Query 003035
Match_columns 855
No_of_seqs 626 out of 4561
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 15:44:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003035.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003035hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 9.3E-41 2E-45 362.3 32.9 401 398-834 98-517 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 1.8E-38 3.9E-43 344.5 31.7 398 377-811 112-521 (966)
3 TIGR02917 PEP_TPR_lipo putativ 100.0 6E-31 1.3E-35 327.1 54.5 437 377-851 427-878 (899)
4 TIGR02917 PEP_TPR_lipo putativ 100.0 4.9E-30 1.1E-34 318.9 54.5 462 377-852 359-845 (899)
5 TIGR00990 3a0801s09 mitochondr 100.0 4.8E-30 1E-34 307.1 46.6 420 384-842 130-574 (615)
6 PRK11447 cellulose synthase su 100.0 5.7E-29 1.2E-33 316.6 50.7 308 520-844 274-705 (1157)
7 PRK11447 cellulose synthase su 100.0 1.9E-28 4.1E-33 311.8 49.4 387 426-838 276-739 (1157)
8 TIGR00990 3a0801s09 mitochondr 100.0 5.2E-28 1.1E-32 289.6 41.5 390 419-851 127-549 (615)
9 PRK15174 Vi polysaccharide exp 100.0 2.2E-25 4.8E-30 266.9 42.4 347 454-842 45-406 (656)
10 PRK15174 Vi polysaccharide exp 100.0 1.7E-25 3.6E-30 268.0 40.8 344 427-814 50-408 (656)
11 KOG2002 TPR-containing nuclear 100.0 2.2E-24 4.8E-29 247.4 47.8 424 388-822 277-758 (1018)
12 PRK09782 bacteriophage N4 rece 100.0 8.2E-25 1.8E-29 267.7 46.3 445 384-845 47-712 (987)
13 PRK10049 pgaA outer membrane p 100.0 6.6E-25 1.4E-29 267.9 43.8 409 427-853 23-470 (765)
14 KOG0547 Translocase of outer m 99.9 4.1E-25 8.8E-30 236.5 32.3 212 620-840 340-567 (606)
15 PRK09782 bacteriophage N4 rece 99.9 2.3E-23 5E-28 255.1 51.5 451 377-844 178-745 (987)
16 PRK10049 pgaA outer membrane p 99.9 3E-23 6.5E-28 253.4 43.9 395 389-818 23-465 (765)
17 KOG2002 TPR-containing nuclear 99.9 3.6E-23 7.8E-28 237.5 37.7 387 398-849 146-569 (1018)
18 PHA02790 Kelch-like protein; P 99.9 1.6E-25 3.5E-30 258.8 15.5 166 218-392 23-195 (480)
19 PHA02713 hypothetical protein; 99.9 8.4E-25 1.8E-29 256.4 18.8 178 212-395 20-203 (557)
20 KOG4350 Uncharacterized conser 99.9 4.4E-25 9.6E-30 229.6 11.3 195 210-411 37-235 (620)
21 KOG4441 Proteins containing BT 99.9 4.4E-24 9.4E-29 249.3 17.2 185 213-406 32-224 (571)
22 PHA03098 kelch-like protein; P 99.9 7.3E-24 1.6E-28 249.8 19.0 169 213-394 5-183 (534)
23 PRK14574 hmsH outer membrane p 99.9 9.2E-20 2E-24 219.4 47.1 442 385-848 38-522 (822)
24 KOG0547 Translocase of outer m 99.9 4.5E-21 9.8E-26 205.7 28.8 341 498-847 132-540 (606)
25 KOG1126 DNA-binding cell divis 99.9 3.1E-21 6.8E-26 215.1 25.7 289 524-845 328-626 (638)
26 PRK11788 tetratricopeptide rep 99.9 3.3E-20 7.1E-25 210.0 34.1 279 498-843 52-355 (389)
27 KOG1155 Anaphase-promoting com 99.9 1.9E-19 4.1E-24 192.4 37.3 413 384-841 81-538 (559)
28 KOG0624 dsRNA-activated protei 99.9 1.9E-20 4.1E-25 192.7 28.4 328 498-843 55-426 (504)
29 KOG1173 Anaphase-promoting com 99.9 6E-20 1.3E-24 200.9 30.7 419 386-845 54-524 (611)
30 PRK11788 tetratricopeptide rep 99.9 1.4E-19 2.9E-24 204.9 34.9 300 421-808 37-346 (389)
31 KOG0548 Molecular co-chaperone 99.8 3.8E-19 8.3E-24 194.2 28.1 341 498-844 19-460 (539)
32 PRK14574 hmsH outer membrane p 99.8 2.1E-17 4.5E-22 199.2 40.0 397 386-817 73-521 (822)
33 KOG1155 Anaphase-promoting com 99.8 3.4E-16 7.4E-21 167.7 43.3 369 420-839 165-553 (559)
34 KOG1126 DNA-binding cell divis 99.8 1.4E-18 3E-23 194.2 24.3 264 516-815 354-626 (638)
35 KOG1173 Anaphase-promoting com 99.8 1.3E-16 2.9E-21 174.9 35.8 280 515-822 244-531 (611)
36 KOG0548 Molecular co-chaperone 99.8 1.3E-16 2.9E-21 174.5 32.5 388 388-822 9-468 (539)
37 KOG2003 TPR repeat-containing 99.8 4.5E-17 9.8E-22 172.6 27.3 423 381-822 201-702 (840)
38 KOG0624 dsRNA-activated protei 99.8 4.4E-17 9.6E-22 168.1 24.4 302 511-845 34-376 (504)
39 PRK11189 lipoprotein NlpI; Pro 99.8 2.1E-17 4.6E-22 179.6 22.4 215 625-849 45-275 (296)
40 KOG2076 RNA polymerase III tra 99.8 6.2E-16 1.3E-20 177.7 33.3 329 421-807 141-510 (895)
41 PRK12370 invasion protein regu 99.8 2.1E-16 4.5E-21 186.6 30.3 241 498-808 278-534 (553)
42 KOG4162 Predicted calmodulin-b 99.8 4.1E-15 8.9E-20 168.4 37.4 412 381-844 284-788 (799)
43 KOG2003 TPR repeat-containing 99.7 2.1E-15 4.7E-20 160.0 32.0 396 387-794 243-708 (840)
44 TIGR02521 type_IV_pilW type IV 99.7 3.1E-16 6.7E-21 162.3 25.1 197 638-841 29-234 (234)
45 PRK12370 invasion protein regu 99.7 4.6E-16 1E-20 183.7 29.7 254 562-842 275-538 (553)
46 PLN03081 pentatricopeptide (PP 99.7 4.8E-15 1E-19 180.5 38.8 400 398-839 139-557 (697)
47 PRK10747 putative protoheme IX 99.7 2.1E-15 4.6E-20 170.9 33.0 303 418-778 83-391 (398)
48 PRK11189 lipoprotein NlpI; Pro 99.7 4.5E-16 9.8E-21 169.2 26.3 227 528-822 39-279 (296)
49 PLN03218 maturation of RBCL 1; 99.7 7.8E-14 1.7E-18 172.8 48.0 382 393-810 382-784 (1060)
50 KOG0495 HAT repeat protein [RN 99.7 4.7E-14 1E-18 156.3 40.7 417 390-849 385-856 (913)
51 TIGR00540 hemY_coli hemY prote 99.7 5.6E-15 1.2E-19 168.3 34.5 301 418-776 83-398 (409)
52 KOG2075 Topoisomerase TOP1-int 99.7 2.6E-17 5.5E-22 177.0 12.5 151 212-366 109-265 (521)
53 PF13429 TPR_15: Tetratricopep 99.7 1.6E-17 3.5E-22 179.5 10.9 262 510-808 5-276 (280)
54 KOG4591 Uncharacterized conser 99.7 9.3E-18 2E-22 160.0 7.8 138 212-355 61-202 (280)
55 KOG0495 HAT repeat protein [RN 99.7 9.1E-13 2E-17 146.3 46.5 358 454-848 519-889 (913)
56 KOG1174 Anaphase-promoting com 99.7 3E-14 6.6E-19 150.6 33.3 397 386-821 102-512 (564)
57 PLN03077 Protein ECB2; Provisi 99.7 5.9E-14 1.3E-18 175.0 42.2 417 377-838 285-719 (857)
58 PF13429 TPR_15: Tetratricopep 99.7 2.9E-17 6.2E-22 177.5 10.7 257 424-776 13-276 (280)
59 TIGR00540 hemY_coli hemY prote 99.7 9.7E-15 2.1E-19 166.3 31.4 288 519-839 88-399 (409)
60 COG3063 PilF Tfp pilus assembl 99.7 2.5E-15 5.5E-20 148.9 21.9 198 640-843 35-240 (250)
61 KOG1129 TPR repeat-containing 99.7 5.7E-16 1.2E-20 159.1 17.4 240 521-822 229-471 (478)
62 PLN03077 Protein ECB2; Provisi 99.7 2.8E-13 6.1E-18 168.9 44.5 439 385-849 226-696 (857)
63 PLN03081 pentatricopeptide (PP 99.7 1E-13 2.2E-18 168.9 39.3 416 392-849 98-533 (697)
64 KOG2076 RNA polymerase III tra 99.7 7.9E-14 1.7E-18 160.6 34.2 367 389-766 147-544 (895)
65 PLN03218 maturation of RBCL 1; 99.7 1.3E-12 2.9E-17 162.0 47.4 376 427-839 378-783 (1060)
66 KOG1125 TPR repeat-containing 99.7 8.7E-16 1.9E-20 169.4 16.8 196 643-842 288-530 (579)
67 KOG1174 Anaphase-promoting com 99.7 9.8E-14 2.1E-18 146.8 30.9 386 426-845 104-506 (564)
68 KOG0550 Molecular chaperone (D 99.7 4.3E-15 9.3E-20 157.5 20.7 268 498-812 66-353 (486)
69 KOG1125 TPR repeat-containing 99.7 8.9E-15 1.9E-19 161.5 22.7 248 497-769 301-563 (579)
70 PF00651 BTB: BTB/POZ domain; 99.7 1.3E-16 2.8E-21 147.0 7.1 103 212-317 5-110 (111)
71 TIGR02521 type_IV_pilW type IV 99.6 4.5E-14 9.8E-19 146.0 25.6 197 548-811 31-234 (234)
72 PRK10747 putative protoheme IX 99.6 2.4E-13 5.2E-18 154.2 32.8 287 519-840 88-391 (398)
73 PLN02789 farnesyltranstransfer 99.6 2E-14 4.4E-19 156.4 22.6 217 626-851 57-314 (320)
74 KOG1129 TPR repeat-containing 99.6 7.6E-15 1.6E-19 151.0 16.0 255 524-846 188-465 (478)
75 KOG4162 Predicted calmodulin-b 99.6 6.3E-13 1.4E-17 150.9 32.6 382 384-778 360-784 (799)
76 PLN02789 farnesyltranstransfer 99.6 1.6E-14 3.5E-19 157.1 18.8 195 649-852 46-263 (320)
77 KOG1840 Kinesin light chain [C 99.6 3.2E-13 7E-18 153.2 29.2 247 509-809 193-479 (508)
78 KOG1127 TPR repeat-containing 99.6 6.7E-13 1.5E-17 153.3 31.7 426 398-839 474-996 (1238)
79 KOG0550 Molecular chaperone (D 99.6 2.5E-14 5.4E-19 151.8 17.1 284 496-842 41-353 (486)
80 smart00225 BTB Broad-Complex, 99.6 4.4E-15 9.5E-20 130.3 9.1 90 219-311 1-90 (90)
81 KOG0783 Uncharacterized conser 99.6 2.1E-15 4.5E-20 169.6 8.5 140 216-358 709-854 (1267)
82 cd05804 StaR_like StaR_like; a 99.6 2E-12 4.3E-17 144.5 31.6 300 511-840 2-337 (355)
83 KOG1127 TPR repeat-containing 99.6 8.3E-13 1.8E-17 152.5 28.3 99 749-848 776-888 (1238)
84 COG3063 PilF Tfp pilus assembl 99.5 1.8E-12 3.9E-17 128.9 24.3 200 551-817 38-244 (250)
85 KOG4682 Uncharacterized conser 99.5 3.4E-14 7.4E-19 149.5 12.4 183 212-401 64-256 (488)
86 KOG1840 Kinesin light chain [C 99.5 7.4E-13 1.6E-17 150.3 19.0 217 634-854 193-460 (508)
87 TIGR03302 OM_YfiO outer membra 99.5 2E-12 4.4E-17 135.8 19.5 176 636-838 29-231 (235)
88 COG2956 Predicted N-acetylgluc 99.5 8E-11 1.7E-15 122.0 30.2 290 519-837 39-345 (389)
89 KOG1156 N-terminal acetyltrans 99.5 1.6E-10 3.6E-15 129.3 33.8 408 386-809 46-511 (700)
90 COG2956 Predicted N-acetylgluc 99.5 1.3E-10 2.8E-15 120.5 30.0 297 423-807 39-345 (389)
91 cd05804 StaR_like StaR_like; a 99.4 1.2E-11 2.7E-16 138.1 22.6 200 636-841 2-217 (355)
92 KOG1156 N-terminal acetyltrans 99.4 1.4E-09 3.1E-14 121.9 36.4 353 421-805 9-464 (700)
93 KOG1915 Cell cycle control pro 99.4 1.4E-08 3.1E-13 109.9 41.5 421 393-844 85-541 (677)
94 TIGR03302 OM_YfiO outer membra 99.4 1.7E-11 3.7E-16 128.8 19.3 147 669-844 28-200 (235)
95 COG3071 HemY Uncharacterized e 99.4 8E-10 1.7E-14 118.1 31.4 300 420-777 85-390 (400)
96 PRK15359 type III secretion sy 99.4 7E-12 1.5E-16 121.2 13.3 120 627-758 14-136 (144)
97 PRK15359 type III secretion sy 99.3 7.5E-12 1.6E-16 121.0 12.7 99 621-719 39-138 (144)
98 PF12569 NARP1: NMDA receptor- 99.3 8.4E-10 1.8E-14 127.1 31.0 283 516-809 5-334 (517)
99 KOG2376 Signal recognition par 99.3 3.2E-09 7E-14 118.0 33.7 395 423-833 83-514 (652)
100 KOG3785 Uncharacterized conser 99.3 5.5E-09 1.2E-13 109.2 31.9 388 398-811 38-492 (557)
101 COG5010 TadD Flp pilus assembl 99.3 1.4E-10 3.1E-15 117.9 18.1 170 626-805 53-227 (257)
102 PRK14720 transcript cleavage f 99.3 5.9E-10 1.3E-14 133.6 26.0 267 509-845 25-312 (906)
103 KOG2376 Signal recognition par 99.3 6.2E-09 1.3E-13 115.8 31.7 357 427-846 20-494 (652)
104 PRK15179 Vi polysaccharide bio 99.3 3.1E-10 6.7E-15 135.2 22.1 145 625-778 71-218 (694)
105 COG5010 TadD Flp pilus assembl 99.3 2.7E-10 5.8E-15 116.0 18.1 172 656-837 49-229 (257)
106 PRK15179 Vi polysaccharide bio 99.2 2.9E-10 6.2E-15 135.5 21.0 154 659-821 71-229 (694)
107 KOG3060 Uncharacterized conser 99.2 5.6E-10 1.2E-14 112.5 19.5 177 637-822 49-233 (289)
108 PRK10370 formate-dependent nit 99.2 1.3E-10 2.8E-15 118.5 14.6 117 653-778 52-174 (198)
109 KOG1915 Cell cycle control pro 99.2 5.7E-07 1.2E-11 97.7 42.6 390 420-840 74-501 (677)
110 PRK10370 formate-dependent nit 99.2 3.5E-10 7.5E-15 115.4 17.6 149 647-815 23-179 (198)
111 KOG1130 Predicted G-alpha GTPa 99.2 1.6E-10 3.6E-15 122.5 15.2 266 522-839 24-344 (639)
112 KOG2047 mRNA splicing factor [ 99.2 2E-06 4.4E-11 96.7 45.8 399 402-842 233-691 (835)
113 PRK04841 transcriptional regul 99.2 3.6E-08 7.9E-13 124.2 37.2 200 642-845 533-766 (903)
114 PRK14720 transcript cleavage f 99.2 6.3E-10 1.4E-14 133.3 19.6 188 635-846 26-259 (906)
115 PRK04841 transcriptional regul 99.2 4.5E-08 9.8E-13 123.4 36.9 167 642-813 575-764 (903)
116 PF12569 NARP1: NMDA receptor- 99.2 1.6E-08 3.5E-13 116.5 29.3 316 419-778 4-335 (517)
117 TIGR02552 LcrH_SycD type III s 99.1 4.5E-10 9.8E-15 107.1 11.9 112 628-748 5-117 (135)
118 KOG2047 mRNA splicing factor [ 99.1 6.9E-07 1.5E-11 100.4 37.3 410 423-841 106-581 (835)
119 TIGR02552 LcrH_SycD type III s 99.1 9.2E-10 2E-14 104.9 12.6 108 662-778 5-115 (135)
120 KOG1128 Uncharacterized conser 99.0 3.5E-09 7.6E-14 120.4 16.5 229 517-791 400-634 (777)
121 COG3071 HemY Uncharacterized e 99.0 8.2E-07 1.8E-11 95.4 33.1 320 349-738 60-388 (400)
122 PF04733 Coatomer_E: Coatomer 99.0 8.7E-09 1.9E-13 111.1 18.6 166 639-818 101-274 (290)
123 KOG1130 Predicted G-alpha GTPa 99.0 8.6E-09 1.9E-13 109.7 16.5 149 656-809 171-344 (639)
124 KOG0553 TPR repeat-containing 99.0 2.7E-09 5.9E-14 110.6 11.7 125 645-778 86-216 (304)
125 PRK15363 pathogenicity island 99.0 5.7E-09 1.2E-13 99.9 12.0 103 633-739 27-131 (157)
126 KOG0553 TPR repeat-containing 99.0 7.2E-09 1.6E-13 107.5 13.5 115 674-797 81-200 (304)
127 KOG1128 Uncharacterized conser 98.9 9.4E-08 2E-12 109.0 22.7 192 522-747 431-623 (777)
128 KOG4340 Uncharacterized conser 98.9 3.6E-07 7.7E-12 94.0 24.1 391 397-812 25-446 (459)
129 KOG3060 Uncharacterized conser 98.9 7.6E-07 1.7E-11 90.2 25.4 161 521-748 58-223 (289)
130 PRK15363 pathogenicity island 98.9 1E-08 2.2E-13 98.2 11.2 107 663-778 23-133 (157)
131 COG4783 Putative Zn-dependent 98.9 1E-07 2.2E-12 104.7 20.0 151 636-810 302-455 (484)
132 PF04733 Coatomer_E: Coatomer 98.9 5.9E-08 1.3E-12 104.7 17.8 248 430-707 12-269 (290)
133 PRK10866 outer membrane biogen 98.9 1.8E-07 3.8E-12 98.6 20.2 170 638-834 30-236 (243)
134 PF09976 TPR_21: Tetratricopep 98.8 9.8E-08 2.1E-12 92.4 16.2 123 644-775 15-145 (145)
135 PLN03088 SGT1, suppressor of 98.8 2.8E-08 6.2E-13 110.8 13.4 110 643-761 5-117 (356)
136 COG4783 Putative Zn-dependent 98.8 2.8E-07 6.1E-12 101.4 20.4 148 671-840 303-455 (484)
137 PRK10153 DNA-binding transcrip 98.8 1.7E-07 3.6E-12 108.9 20.0 152 665-817 328-490 (517)
138 KOG0511 Ankyrin repeat protein 98.8 2.2E-08 4.7E-13 105.2 11.2 148 220-370 295-449 (516)
139 PF13414 TPR_11: TPR repeat; P 98.8 2.3E-08 4.9E-13 83.4 8.3 67 639-705 2-69 (69)
140 PRK02603 photosystem I assembl 98.8 1.2E-07 2.6E-12 94.6 14.0 115 637-778 32-150 (172)
141 PRK10866 outer membrane biogen 98.7 1.1E-06 2.3E-11 92.7 21.3 189 516-729 33-234 (243)
142 PF14938 SNAP: Soluble NSF att 98.7 6.7E-08 1.5E-12 104.5 12.3 197 642-843 37-270 (282)
143 PF13525 YfiO: Outer membrane 98.7 5.5E-07 1.2E-11 92.4 18.1 151 639-816 4-177 (203)
144 PLN03088 SGT1, suppressor of 98.7 1.1E-07 2.3E-12 106.1 13.5 108 677-793 5-117 (356)
145 PF13525 YfiO: Outer membrane 98.7 4.8E-07 1E-11 92.8 16.9 168 516-727 6-198 (203)
146 PRK02603 photosystem I assembl 98.7 2.6E-07 5.7E-12 92.2 13.9 116 671-813 32-153 (172)
147 COG4785 NlpI Lipoprotein NlpI, 98.7 4.9E-07 1.1E-11 89.3 15.1 198 639-849 64-276 (297)
148 CHL00033 ycf3 photosystem I as 98.7 2.1E-07 4.4E-12 92.5 12.9 96 655-759 14-117 (168)
149 TIGR02795 tol_pal_ybgF tol-pal 98.7 2.1E-07 4.5E-12 86.0 11.7 99 641-748 3-108 (119)
150 CHL00033 ycf3 photosystem I as 98.7 2E-07 4.3E-12 92.6 12.3 97 626-722 19-121 (168)
151 COG0457 NrfG FOG: TPR repeat [ 98.7 9.9E-06 2.1E-10 81.5 25.1 204 630-842 47-268 (291)
152 PF09976 TPR_21: Tetratricopep 98.7 4.6E-07 1E-11 87.7 14.4 118 683-807 20-145 (145)
153 cd00189 TPR Tetratricopeptide 98.6 1.8E-07 3.8E-12 80.9 9.9 93 642-738 2-95 (100)
154 cd00189 TPR Tetratricopeptide 98.6 2.6E-07 5.6E-12 79.8 10.8 93 750-842 2-100 (100)
155 PF13414 TPR_11: TPR repeat; P 98.6 8.5E-08 1.8E-12 80.0 7.2 63 749-811 4-69 (69)
156 TIGR02795 tol_pal_ybgF tol-pal 98.6 3.6E-07 7.8E-12 84.4 12.1 105 709-817 4-113 (119)
157 PF13432 TPR_16: Tetratricopep 98.6 1.3E-07 2.8E-12 77.9 7.9 64 644-707 1-64 (65)
158 KOG3785 Uncharacterized conser 98.6 5.4E-05 1.2E-09 80.0 28.5 373 383-781 59-495 (557)
159 COG4785 NlpI Lipoprotein NlpI, 98.6 2.8E-06 6.2E-11 84.0 16.9 209 519-794 69-289 (297)
160 KOG4340 Uncharacterized conser 98.6 1.2E-06 2.6E-11 90.2 14.9 175 625-809 29-207 (459)
161 COG4235 Cytochrome c biogenesi 98.6 6.4E-07 1.4E-11 93.9 13.2 109 626-738 142-254 (287)
162 KOG0543 FKBP-type peptidyl-pro 98.6 1.3E-06 2.7E-11 94.7 15.7 141 676-841 210-357 (397)
163 PF12895 Apc3: Anaphase-promot 98.6 1.9E-07 4.2E-12 81.2 7.5 81 652-737 1-84 (84)
164 PF13432 TPR_16: Tetratricopep 98.5 4E-07 8.6E-12 74.9 8.2 62 753-814 2-65 (65)
165 PF14938 SNAP: Soluble NSF att 98.5 7.1E-07 1.5E-11 96.5 12.2 176 655-849 30-235 (282)
166 PRK10153 DNA-binding transcrip 98.5 2.1E-06 4.6E-11 99.8 16.6 135 635-778 332-483 (517)
167 PRK10803 tol-pal system protei 98.5 1.5E-06 3.3E-11 92.2 13.5 101 639-748 141-249 (263)
168 PRK11906 transcriptional regul 98.5 5.1E-06 1.1E-10 92.2 17.9 156 644-808 259-435 (458)
169 COG0457 NrfG FOG: TPR repeat [ 98.5 0.0002 4.4E-09 71.9 28.7 168 636-812 91-268 (291)
170 KOG4648 Uncharacterized conser 98.5 4.3E-08 9.2E-13 102.3 1.5 192 644-845 101-336 (536)
171 PRK11906 transcriptional regul 98.5 7.4E-06 1.6E-10 91.0 18.5 105 625-729 323-429 (458)
172 COG4235 Cytochrome c biogenesi 98.4 3.1E-06 6.7E-11 88.8 14.4 114 656-778 138-257 (287)
173 KOG2053 Mitochondrial inherita 98.4 1.6E-05 3.5E-10 92.9 21.0 225 613-843 16-259 (932)
174 KOG3616 Selective LIM binding 98.4 0.00053 1.1E-08 78.3 31.8 255 526-814 743-1029(1636)
175 KOG1070 rRNA processing protei 98.4 2.8E-05 6E-10 94.3 22.7 207 625-840 1443-1664(1710)
176 PF12895 Apc3: Anaphase-promot 98.4 7.4E-07 1.6E-11 77.5 7.3 79 686-774 1-84 (84)
177 PF12688 TPR_5: Tetratrico pep 98.4 1E-05 2.3E-10 75.0 14.0 89 641-729 2-97 (120)
178 KOG1941 Acetylcholine receptor 98.3 6.6E-05 1.4E-09 79.6 20.4 168 641-812 123-323 (518)
179 KOG4648 Uncharacterized conser 98.3 7.8E-07 1.7E-11 93.1 6.1 100 752-851 101-206 (536)
180 KOG0783 Uncharacterized conser 98.3 8.3E-07 1.8E-11 101.6 6.7 70 213-284 554-635 (1267)
181 PF14559 TPR_19: Tetratricopep 98.3 2.4E-06 5.1E-11 70.9 7.8 66 650-715 1-67 (68)
182 KOG3617 WD40 and TPR repeat-co 98.3 0.0006 1.3E-08 79.0 29.1 415 390-843 809-1363(1416)
183 PF12688 TPR_5: Tetratrico pep 98.3 7E-06 1.5E-10 76.1 11.1 98 675-776 2-103 (120)
184 COG4700 Uncharacterized protei 98.3 3E-05 6.4E-10 75.2 15.4 126 642-776 91-221 (251)
185 COG4105 ComL DNA uptake lipopr 98.3 0.00013 2.8E-09 75.3 20.9 163 639-801 33-225 (254)
186 PRK10803 tol-pal system protei 98.3 7E-06 1.5E-10 87.2 12.1 100 708-816 143-253 (263)
187 KOG3081 Vesicle coat complex C 98.3 0.00015 3.2E-09 74.5 20.7 249 430-707 19-275 (299)
188 PRK15331 chaperone protein Sic 98.2 1E-05 2.2E-10 78.0 11.5 101 634-738 31-132 (165)
189 PF10345 Cohesin_load: Cohesin 98.2 0.025 5.5E-07 68.0 43.1 436 400-838 39-605 (608)
190 KOG3617 WD40 and TPR repeat-co 98.2 0.0029 6.2E-08 73.6 31.2 293 401-774 788-1171(1416)
191 PF13424 TPR_12: Tetratricopep 98.2 7.6E-06 1.6E-10 69.9 8.2 62 749-810 6-76 (78)
192 PF13371 TPR_9: Tetratricopept 98.2 8.2E-06 1.8E-10 68.6 8.1 68 647-714 2-70 (73)
193 KOG0543 FKBP-type peptidyl-pro 98.1 1.7E-05 3.7E-10 86.1 12.1 124 644-776 212-354 (397)
194 COG4700 Uncharacterized protei 98.1 0.00019 4E-09 69.8 17.3 151 652-808 68-221 (251)
195 KOG3081 Vesicle coat complex C 98.1 0.0019 4E-08 66.6 25.3 267 522-837 15-292 (299)
196 PRK15331 chaperone protein Sic 98.1 2.4E-05 5.2E-10 75.5 11.2 107 663-778 26-135 (165)
197 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 4.2E-05 9E-10 85.5 14.8 111 651-773 180-293 (395)
198 KOG4555 TPR repeat-containing 98.1 4.8E-05 1E-09 69.5 12.1 94 681-778 50-145 (175)
199 KOG1070 rRNA processing protei 98.1 0.0015 3.2E-08 80.1 27.8 216 498-778 1441-1664(1710)
200 COG1729 Uncharacterized protei 98.1 2.1E-05 4.7E-10 81.7 10.6 97 643-748 144-247 (262)
201 COG3898 Uncharacterized membra 98.1 0.0044 9.6E-08 66.8 27.5 291 390-778 93-393 (531)
202 KOG1941 Acetylcholine receptor 98.0 7.9E-05 1.7E-09 79.0 14.2 194 642-839 8-235 (518)
203 COG4105 ComL DNA uptake lipopr 98.0 0.00038 8.3E-09 71.8 18.8 183 517-729 36-226 (254)
204 COG3898 Uncharacterized membra 98.0 0.0086 1.9E-07 64.7 29.0 63 519-582 124-188 (531)
205 PF13371 TPR_9: Tetratricopept 98.0 2.8E-05 6.1E-10 65.4 8.5 64 755-818 2-67 (73)
206 KOG4234 TPR repeat-containing 98.0 2.5E-05 5.4E-10 76.6 9.0 92 753-844 100-202 (271)
207 PLN03098 LPA1 LOW PSII ACCUMUL 98.0 2.2E-05 4.7E-10 87.2 9.5 69 635-703 70-141 (453)
208 KOG4555 TPR repeat-containing 98.0 8.8E-05 1.9E-09 67.9 11.3 92 643-738 46-142 (175)
209 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 7.6E-05 1.6E-09 83.4 13.4 106 625-737 188-294 (395)
210 PF14559 TPR_19: Tetratricopep 98.0 1.6E-05 3.4E-10 65.9 6.1 63 759-821 2-66 (68)
211 KOG4234 TPR repeat-containing 97.9 5.9E-05 1.3E-09 74.0 10.3 107 712-822 100-210 (271)
212 KOG2838 Uncharacterized conser 97.9 6.3E-06 1.4E-10 83.4 3.7 112 228-352 262-389 (401)
213 PLN03098 LPA1 LOW PSII ACCUMUL 97.9 2.3E-05 5E-10 87.0 8.4 68 668-739 69-140 (453)
214 PF13424 TPR_12: Tetratricopep 97.9 8.9E-06 1.9E-10 69.5 3.8 65 708-777 6-75 (78)
215 COG1729 Uncharacterized protei 97.9 8.8E-05 1.9E-09 77.2 11.7 100 710-818 144-253 (262)
216 PF13512 TPR_18: Tetratricopep 97.9 0.00012 2.7E-09 69.1 11.1 95 640-738 10-126 (142)
217 PF13512 TPR_18: Tetratricopep 97.9 0.00016 3.4E-09 68.5 11.7 117 674-816 10-135 (142)
218 KOG2716 Polymerase delta-inter 97.9 7.6E-05 1.6E-09 76.1 10.3 97 220-319 7-106 (230)
219 KOG1987 Speckle-type POZ prote 97.8 1.9E-05 4.1E-10 86.2 4.5 131 226-360 109-244 (297)
220 KOG2053 Mitochondrial inherita 97.8 0.014 3E-07 69.2 27.3 260 497-773 59-333 (932)
221 KOG3616 Selective LIM binding 97.7 0.093 2E-06 60.7 32.0 123 643-776 768-910 (1636)
222 PF06552 TOM20_plant: Plant sp 97.7 8.1E-05 1.8E-09 72.5 6.8 67 656-722 7-84 (186)
223 KOG2300 Uncharacterized conser 97.6 0.17 3.7E-06 56.4 42.6 426 384-822 10-530 (629)
224 KOG3473 RNA polymerase II tran 97.6 0.00037 8.1E-09 59.7 8.4 81 220-303 19-112 (112)
225 PF02214 BTB_2: BTB/POZ domain 97.6 8.2E-05 1.8E-09 66.2 4.7 88 220-310 1-94 (94)
226 KOG2300 Uncharacterized conser 97.5 0.25 5.3E-06 55.3 33.4 374 421-840 9-475 (629)
227 KOG1550 Extracellular protein 97.5 0.04 8.7E-07 65.3 27.9 116 434-575 227-355 (552)
228 PF13428 TPR_14: Tetratricopep 97.5 0.00024 5.1E-09 53.5 5.7 43 780-822 1-43 (44)
229 KOG2471 TPR repeat-containing 97.5 0.0004 8.6E-09 76.4 9.4 142 647-792 213-381 (696)
230 PF04184 ST7: ST7 protein; In 97.5 0.0036 7.8E-08 70.0 16.5 184 617-819 179-385 (539)
231 PF13281 DUF4071: Domain of un 97.5 0.034 7.3E-07 61.5 24.0 150 638-814 177-339 (374)
232 KOG2796 Uncharacterized conser 97.5 0.0099 2.1E-07 61.1 18.2 149 517-717 179-333 (366)
233 KOG2796 Uncharacterized conser 97.4 0.0093 2E-07 61.3 17.7 166 675-844 178-359 (366)
234 KOG0545 Aryl-hydrocarbon recep 97.4 0.00077 1.7E-08 68.3 10.0 95 749-843 179-297 (329)
235 PF13431 TPR_17: Tetratricopep 97.4 0.00014 3.1E-09 51.3 3.1 32 663-694 2-33 (34)
236 KOG1585 Protein required for f 97.4 0.0052 1.1E-07 62.5 15.1 192 640-835 31-252 (308)
237 PF06552 TOM20_plant: Plant sp 97.4 0.0012 2.6E-08 64.6 10.1 103 690-822 7-122 (186)
238 KOG0545 Aryl-hydrocarbon recep 97.3 0.0031 6.8E-08 64.0 12.8 98 421-548 180-297 (329)
239 KOG2471 TPR repeat-containing 97.3 0.15 3.3E-06 56.9 26.3 134 456-589 211-376 (696)
240 COG2976 Uncharacterized protei 97.3 0.005 1.1E-07 60.9 13.6 114 695-812 73-191 (207)
241 KOG2610 Uncharacterized conser 97.3 0.012 2.6E-07 62.4 17.2 201 628-837 53-274 (491)
242 KOG2610 Uncharacterized conser 97.3 0.011 2.5E-07 62.5 16.9 207 504-738 54-274 (491)
243 KOG1586 Protein required for f 97.3 0.0093 2E-07 60.4 15.3 193 644-840 38-266 (288)
244 KOG4642 Chaperone-dependent E3 97.3 0.0013 2.8E-08 66.7 9.2 109 647-759 17-128 (284)
245 PF04184 ST7: ST7 protein; In 97.2 0.0086 1.9E-07 67.0 15.7 176 651-844 179-380 (539)
246 PF13281 DUF4071: Domain of un 97.2 0.026 5.6E-07 62.5 19.3 164 673-843 140-338 (374)
247 PF13431 TPR_17: Tetratricopep 97.2 0.00035 7.5E-09 49.4 3.2 32 504-535 2-33 (34)
248 PF00515 TPR_1: Tetratricopept 97.2 0.00083 1.8E-08 47.2 4.9 34 674-707 1-34 (34)
249 PF13428 TPR_14: Tetratricopep 97.2 0.0009 2E-08 50.3 5.3 40 642-681 3-42 (44)
250 KOG1550 Extracellular protein 97.1 0.13 2.7E-06 61.2 25.6 199 639-847 324-546 (552)
251 PF07719 TPR_2: Tetratricopept 97.1 0.0011 2.5E-08 46.3 5.1 34 780-813 1-34 (34)
252 KOG1586 Protein required for f 97.1 0.019 4.1E-07 58.2 15.5 174 650-847 24-232 (288)
253 KOG2838 Uncharacterized conser 97.1 0.00042 9.1E-09 70.5 3.7 63 220-284 133-197 (401)
254 PF00515 TPR_1: Tetratricopept 97.1 0.00095 2.1E-08 46.9 4.5 34 780-813 1-34 (34)
255 PF05843 Suf: Suppressor of fo 97.1 0.009 2E-07 64.5 14.1 133 642-778 3-137 (280)
256 PF07719 TPR_2: Tetratricopept 97.0 0.0012 2.6E-08 46.3 4.6 34 674-707 1-34 (34)
257 KOG4507 Uncharacterized conser 97.0 0.099 2.2E-06 59.3 21.1 99 714-821 614-717 (886)
258 KOG1585 Protein required for f 97.0 0.09 1.9E-06 53.8 18.8 149 648-813 99-260 (308)
259 PF10300 DUF3808: Protein of u 97.0 0.023 5E-07 65.9 17.1 152 653-809 201-376 (468)
260 KOG0985 Vesicle coat protein c 96.9 1.6 3.5E-05 53.0 31.7 181 637-822 1101-1321(1666)
261 COG3118 Thioredoxin domain-con 96.9 0.033 7.1E-07 58.8 16.0 146 640-795 134-287 (304)
262 COG2976 Uncharacterized protei 96.9 0.03 6.5E-07 55.6 14.7 112 658-778 70-189 (207)
263 KOG4642 Chaperone-dependent E3 96.9 0.0022 4.9E-08 64.9 6.7 92 678-778 14-108 (284)
264 KOG0530 Protein farnesyltransf 96.8 0.019 4.2E-07 59.1 13.1 159 651-850 54-227 (318)
265 COG0790 FOG: TPR repeat, SEL1 96.8 0.13 2.8E-06 55.7 20.5 174 653-841 54-268 (292)
266 PF10345 Cohesin_load: Cohesin 96.8 2.1 4.5E-05 51.7 38.4 415 383-808 61-605 (608)
267 KOG0890 Protein kinase of the 96.7 0.69 1.5E-05 60.9 28.5 121 424-545 1388-1513(2382)
268 COG3118 Thioredoxin domain-con 96.7 0.056 1.2E-06 57.1 15.8 156 520-699 139-297 (304)
269 PF02259 FAT: FAT domain; Int 96.7 1 2.2E-05 49.9 27.3 170 670-846 142-345 (352)
270 KOG1914 mRNA cleavage and poly 96.7 1.8 3.8E-05 49.4 29.2 173 661-839 266-464 (656)
271 PF10300 DUF3808: Protein of u 96.6 0.016 3.5E-07 67.2 12.5 115 653-776 246-375 (468)
272 KOG0376 Serine-threonine phosp 96.6 0.0015 3.3E-08 72.6 3.8 90 458-547 11-104 (476)
273 COG0790 FOG: TPR repeat, SEL1 96.6 0.23 5E-06 53.8 20.7 160 641-812 74-269 (292)
274 PF02259 FAT: FAT domain; Int 96.5 0.61 1.3E-05 51.7 24.2 117 636-761 142-305 (352)
275 KOG1308 Hsp70-interacting prot 96.4 0.002 4.4E-08 68.6 3.2 87 648-738 122-209 (377)
276 PF13181 TPR_8: Tetratricopept 96.4 0.0065 1.4E-07 42.5 4.8 33 781-813 2-34 (34)
277 KOG0376 Serine-threonine phosp 96.4 0.0034 7.3E-08 69.9 4.5 94 646-748 10-104 (476)
278 PF05843 Suf: Suppressor of fo 96.3 0.067 1.4E-06 57.8 14.4 134 676-818 3-145 (280)
279 COG2909 MalT ATP-dependent tra 96.3 1.5 3.3E-05 52.8 26.1 209 640-853 415-661 (894)
280 smart00512 Skp1 Found in Skp1 96.3 0.015 3.3E-07 52.7 7.5 81 220-303 4-104 (104)
281 KOG1665 AFH1-interacting prote 96.2 0.017 3.6E-07 57.7 7.7 90 220-312 11-105 (302)
282 PF13181 TPR_8: Tetratricopept 96.2 0.0092 2E-07 41.7 4.5 32 675-706 2-33 (34)
283 KOG1914 mRNA cleavage and poly 96.2 3.4 7.3E-05 47.3 34.3 422 376-841 15-503 (656)
284 KOG0985 Vesicle coat protein c 96.1 5.1 0.00011 49.0 30.1 118 643-767 1223-1373(1666)
285 PF07707 BACK: BTB And C-termi 96.1 0.015 3.1E-07 52.3 6.6 40 324-363 1-40 (103)
286 COG2909 MalT ATP-dependent tra 96.1 5.3 0.00011 48.5 29.5 228 522-806 422-685 (894)
287 PF11822 DUF3342: Domain of un 96.0 0.011 2.3E-07 63.3 5.7 91 227-319 14-105 (317)
288 KOG1308 Hsp70-interacting prot 95.9 0.0089 1.9E-07 63.8 4.6 93 682-783 122-218 (377)
289 PF08631 SPO22: Meiosis protei 95.9 3.2 7E-05 44.7 26.6 73 631-703 112-186 (278)
290 PF13176 TPR_7: Tetratricopept 95.9 0.013 2.8E-07 41.9 4.0 26 751-776 2-27 (36)
291 KOG2714 SETA binding protein S 95.9 0.03 6.5E-07 61.4 8.6 90 220-313 13-110 (465)
292 COG4649 Uncharacterized protei 95.8 0.62 1.4E-05 45.4 16.0 144 640-791 58-211 (221)
293 KOG0530 Protein farnesyltransf 95.7 0.13 2.7E-06 53.3 11.8 219 625-850 62-309 (318)
294 PF03704 BTAD: Bacterial trans 95.7 0.16 3.6E-06 48.7 12.3 89 646-738 12-123 (146)
295 PF03704 BTAD: Bacterial trans 95.7 0.21 4.6E-06 47.9 13.0 111 679-809 11-125 (146)
296 KOG0551 Hsp90 co-chaperone CNS 95.6 0.057 1.2E-06 57.6 9.2 92 749-840 82-183 (390)
297 PF13174 TPR_6: Tetratricopept 95.6 0.022 4.7E-07 39.3 4.3 33 781-813 1-33 (33)
298 PF08631 SPO22: Meiosis protei 95.5 4.3 9.4E-05 43.7 25.0 125 391-543 3-149 (278)
299 KOG3824 Huntingtin interacting 95.4 0.043 9.3E-07 57.6 7.5 83 633-715 106-192 (472)
300 KOG1724 SCF ubiquitin ligase, 95.4 0.099 2.1E-06 51.0 9.4 106 220-328 7-139 (162)
301 PF13174 TPR_6: Tetratricopept 95.4 0.02 4.4E-07 39.5 3.5 32 675-706 1-32 (33)
302 PF14561 TPR_20: Tetratricopep 95.0 0.21 4.6E-06 43.9 9.6 64 660-723 8-74 (90)
303 PF03931 Skp1_POZ: Skp1 family 95.0 0.11 2.4E-06 42.2 7.2 55 220-279 3-58 (62)
304 PF13176 TPR_7: Tetratricopept 95.0 0.053 1.1E-06 38.7 4.7 29 782-810 1-29 (36)
305 PF08424 NRDE-2: NRDE-2, neces 95.0 0.79 1.7E-05 50.5 16.3 148 627-778 6-184 (321)
306 PF04910 Tcf25: Transcriptiona 94.9 0.65 1.4E-05 51.9 15.6 165 628-813 28-226 (360)
307 PF09613 HrpB1_HrpK: Bacterial 94.7 0.34 7.4E-06 47.0 10.8 81 644-724 14-95 (160)
308 KOG0551 Hsp90 co-chaperone CNS 94.5 0.31 6.8E-06 52.2 10.9 99 636-738 76-180 (390)
309 KOG1464 COP9 signalosome, subu 94.4 1.9 4.1E-05 45.0 15.8 51 527-577 39-94 (440)
310 KOG1464 COP9 signalosome, subu 94.1 1.2 2.6E-05 46.4 13.8 193 652-848 39-269 (440)
311 PF08424 NRDE-2: NRDE-2, neces 94.0 1.8 3.9E-05 47.7 16.3 139 661-810 6-184 (321)
312 KOG4014 Uncharacterized conser 93.9 2 4.4E-05 42.3 14.1 162 673-839 33-233 (248)
313 smart00875 BACK BTB And C-term 93.8 0.066 1.4E-06 47.6 3.9 40 324-363 1-40 (101)
314 PF10602 RPN7: 26S proteasome 93.6 1.1 2.3E-05 44.9 12.5 88 749-836 37-139 (177)
315 PF14561 TPR_20: Tetratricopep 93.6 0.49 1.1E-05 41.6 8.8 75 625-699 7-83 (90)
316 smart00028 TPR Tetratricopepti 93.4 0.11 2.4E-06 34.4 3.6 32 781-812 2-33 (34)
317 PF09986 DUF2225: Uncharacteri 93.4 1.1 2.4E-05 46.2 12.4 95 654-778 91-195 (214)
318 PF12968 DUF3856: Domain of Un 93.4 1.3 2.8E-05 40.5 11.0 91 749-839 8-129 (144)
319 smart00028 TPR Tetratricopepti 93.4 0.1 2.2E-06 34.5 3.4 31 676-706 3-33 (34)
320 KOG1839 Uncharacterized protei 93.3 0.76 1.6E-05 57.5 12.8 167 639-809 931-1128(1236)
321 PF14853 Fis1_TPR_C: Fis1 C-te 93.2 0.31 6.6E-06 38.2 6.1 32 676-707 3-34 (53)
322 KOG1463 26S proteasome regulat 93.2 12 0.00026 40.6 19.6 271 519-811 8-318 (411)
323 PF12968 DUF3856: Domain of Un 93.2 1.9 4.2E-05 39.4 11.8 89 646-738 15-127 (144)
324 COG5159 RPN6 26S proteasome re 93.1 13 0.00029 39.3 22.8 273 519-841 7-316 (421)
325 COG4976 Predicted methyltransf 93.0 0.17 3.7E-06 51.4 5.6 59 649-707 4-62 (287)
326 PF09986 DUF2225: Uncharacteri 93.0 0.31 6.7E-06 50.3 7.7 62 749-810 119-195 (214)
327 KOG3824 Huntingtin interacting 92.7 0.23 5E-06 52.3 6.2 67 756-822 124-192 (472)
328 COG4649 Uncharacterized protei 92.4 4.9 0.00011 39.5 14.2 131 685-821 69-207 (221)
329 KOG1778 CREB binding protein/P 92.4 0.059 1.3E-06 58.3 1.5 144 220-367 29-174 (319)
330 PF14853 Fis1_TPR_C: Fis1 C-te 92.3 0.42 9.1E-06 37.4 5.7 37 782-818 3-39 (53)
331 TIGR02561 HrpB1_HrpK type III 92.2 1.2 2.7E-05 42.5 9.7 75 650-724 20-95 (153)
332 COG5159 RPN6 26S proteasome re 92.1 19 0.0004 38.2 20.0 206 424-705 8-237 (421)
333 PF13374 TPR_10: Tetratricopep 92.0 0.27 5.8E-06 35.7 4.2 29 750-778 4-32 (42)
334 COG3914 Spy Predicted O-linked 91.9 5.6 0.00012 46.1 16.3 132 653-793 44-189 (620)
335 KOG3783 Uncharacterized conser 91.7 15 0.00032 42.4 19.2 75 629-705 256-334 (546)
336 PF13374 TPR_10: Tetratricopep 91.7 0.27 5.9E-06 35.6 4.0 29 420-448 3-31 (42)
337 KOG1463 26S proteasome regulat 91.7 9.6 0.00021 41.3 16.6 160 678-841 132-318 (411)
338 PF10602 RPN7: 26S proteasome 91.4 1.3 2.9E-05 44.2 9.8 97 675-775 37-140 (177)
339 KOG4507 Uncharacterized conser 91.3 1.5 3.3E-05 50.2 10.8 112 628-748 201-315 (886)
340 PRK10941 hypothetical protein; 91.2 1.7 3.7E-05 46.4 10.8 67 646-712 187-254 (269)
341 COG4976 Predicted methyltransf 91.1 0.23 5E-06 50.5 3.9 55 759-813 6-62 (287)
342 PRK13184 pknD serine/threonine 91.1 51 0.0011 41.5 29.3 107 457-583 481-587 (932)
343 PF07079 DUF1347: Protein of u 90.6 35 0.00075 38.7 37.6 47 758-804 472-519 (549)
344 COG1747 Uncharacterized N-term 90.1 41 0.00088 38.6 20.8 130 302-447 29-159 (711)
345 PF04190 DUF410: Protein of un 90.0 20 0.00044 38.1 17.8 128 672-822 88-236 (260)
346 PF04781 DUF627: Protein of un 89.7 1.1 2.4E-05 40.6 6.7 85 619-703 9-107 (111)
347 PRK10941 hypothetical protein; 89.7 1.8 3.9E-05 46.2 9.5 70 749-818 182-253 (269)
348 PRK13184 pknD serine/threonine 89.5 69 0.0015 40.4 27.3 91 398-488 491-589 (932)
349 PF01466 Skp1: Skp1 family, di 89.2 0.91 2E-05 38.7 5.6 52 286-337 11-64 (78)
350 PF04781 DUF627: Protein of un 88.7 2.1 4.6E-05 38.8 7.7 89 646-738 2-105 (111)
351 PF12862 Apc5: Anaphase-promot 88.6 2.4 5.2E-05 37.5 8.0 59 649-707 7-74 (94)
352 KOG3364 Membrane protein invol 88.5 3.2 7E-05 39.0 8.8 70 749-818 33-109 (149)
353 KOG0890 Protein kinase of the 88.4 1.2E+02 0.0025 41.6 32.2 113 670-787 1666-1796(2382)
354 KOG2581 26S proteasome regulat 87.8 12 0.00027 41.4 14.1 25 643-667 129-153 (493)
355 PF11207 DUF2989: Protein of u 87.8 3.7 8E-05 41.5 9.6 53 640-693 141-197 (203)
356 KOG0529 Protein geranylgeranyl 87.7 15 0.00032 41.0 14.8 164 657-850 46-235 (421)
357 PF04910 Tcf25: Transcriptiona 87.6 22 0.00048 39.8 16.8 96 678-778 107-223 (360)
358 KOG2041 WD40 repeat protein [G 87.4 71 0.0015 38.0 32.2 112 388-540 754-877 (1189)
359 KOG2715 Uncharacterized conser 87.1 6.5 0.00014 38.0 10.2 101 215-318 17-122 (210)
360 KOG0511 Ankyrin repeat protein 87.1 0.69 1.5E-05 50.0 4.2 85 220-309 152-237 (516)
361 KOG3364 Membrane protein invol 87.1 5.4 0.00012 37.5 9.4 71 640-710 32-108 (149)
362 KOG2422 Uncharacterized conser 86.9 25 0.00054 40.8 16.4 149 432-580 251-451 (665)
363 KOG3783 Uncharacterized conser 86.9 67 0.0015 37.3 32.3 272 460-738 199-518 (546)
364 PF04053 Coatomer_WDAD: Coatom 86.8 18 0.00039 41.7 15.8 155 651-836 272-428 (443)
365 KOG1538 Uncharacterized conser 86.4 21 0.00045 41.9 15.4 46 680-729 779-826 (1081)
366 PF10579 Rapsyn_N: Rapsyn N-te 86.3 4.3 9.2E-05 34.5 7.6 60 643-702 9-71 (80)
367 PF12862 Apc5: Anaphase-promot 86.2 4.9 0.00011 35.5 8.7 62 717-778 8-71 (94)
368 KOG2396 HAT (Half-A-TPR) repea 86.0 7.9 0.00017 44.1 11.8 79 629-707 94-173 (568)
369 COG5201 SKP1 SCF ubiquitin lig 85.8 6.3 0.00014 36.3 8.9 102 220-326 4-132 (158)
370 KOG1258 mRNA processing protei 85.6 82 0.0018 37.0 33.6 166 648-822 305-483 (577)
371 KOG1310 WD40 repeat protein [G 85.5 2.5 5.5E-05 48.0 7.6 82 653-738 387-472 (758)
372 KOG3807 Predicted membrane pro 85.4 59 0.0013 35.2 18.0 29 816-844 368-396 (556)
373 PF10516 SHNi-TPR: SHNi-TPR; 85.1 1.1 2.3E-05 32.5 3.1 30 420-449 2-31 (38)
374 PF09613 HrpB1_HrpK: Bacterial 84.2 6.6 0.00014 38.3 9.0 68 498-565 27-95 (160)
375 COG3914 Spy Predicted O-linked 84.0 24 0.00053 41.1 14.7 120 693-822 50-184 (620)
376 PF07079 DUF1347: Protein of u 83.8 85 0.0018 35.7 38.5 199 555-776 305-523 (549)
377 KOG1258 mRNA processing protei 83.6 1E+02 0.0022 36.3 33.4 161 630-794 321-489 (577)
378 PF10579 Rapsyn_N: Rapsyn N-te 82.8 6.1 0.00013 33.6 7.0 62 677-738 9-74 (80)
379 KOG0529 Protein geranylgeranyl 82.2 42 0.00091 37.6 15.1 164 622-822 45-237 (421)
380 PF04053 Coatomer_WDAD: Coatom 82.1 42 0.00092 38.7 16.1 63 651-725 329-391 (443)
381 KOG3840 Uncharaterized conserv 81.2 2.5 5.5E-05 44.4 5.2 84 220-304 98-185 (438)
382 COG2912 Uncharacterized conser 81.2 3 6.4E-05 44.1 5.8 60 523-582 189-249 (269)
383 PF11207 DUF2989: Protein of u 81.2 53 0.0011 33.4 14.3 92 473-567 99-197 (203)
384 KOG2041 WD40 repeat protein [G 80.2 1.4E+02 0.003 35.8 24.5 88 669-774 847-936 (1189)
385 KOG4279 Serine/threonine prote 80.1 7.5 0.00016 46.0 8.9 172 615-813 209-399 (1226)
386 PF10516 SHNi-TPR: SHNi-TPR; 79.8 3 6.5E-05 30.2 3.7 29 750-778 3-31 (38)
387 TIGR02561 HrpB1_HrpK type III 79.5 10 0.00022 36.4 8.2 68 498-565 27-95 (153)
388 PF07721 TPR_4: Tetratricopept 79.4 2.3 5E-05 27.7 2.8 24 675-698 2-25 (26)
389 PF07721 TPR_4: Tetratricopept 78.8 2.4 5.3E-05 27.6 2.8 22 782-803 3-24 (26)
390 PRK09687 putative lyase; Provi 78.0 1.1E+02 0.0023 33.1 21.3 190 638-843 66-267 (280)
391 KOG2422 Uncharacterized conser 77.9 1.2E+02 0.0027 35.5 17.4 150 653-811 251-450 (665)
392 PRK15180 Vi polysaccharide bio 77.8 9.8 0.00021 42.9 8.6 120 615-738 298-418 (831)
393 PF07720 TPR_3: Tetratricopept 77.3 7.4 0.00016 27.8 5.0 32 781-812 2-35 (36)
394 PF07720 TPR_3: Tetratricopept 76.9 6.7 0.00015 28.0 4.8 32 675-706 2-35 (36)
395 COG5191 Uncharacterized conser 76.8 5.9 0.00013 42.3 6.3 78 630-707 97-175 (435)
396 PF10373 EST1_DNA_bind: Est1 D 76.6 8 0.00017 41.2 7.8 61 659-719 1-62 (278)
397 KOG4814 Uncharacterized conser 76.5 1.7E+02 0.0037 34.8 18.6 63 643-705 397-459 (872)
398 KOG1839 Uncharacterized protei 75.4 11 0.00024 47.6 9.2 143 631-777 964-1128(1236)
399 PF04190 DUF410: Protein of un 75.2 86 0.0019 33.4 14.9 138 678-839 14-170 (260)
400 COG2912 Uncharacterized conser 74.5 16 0.00035 38.7 8.9 64 649-712 190-254 (269)
401 COG5191 Uncharacterized conser 73.9 3.9 8.5E-05 43.6 4.1 72 749-820 108-182 (435)
402 KOG4014 Uncharacterized conser 73.4 1E+02 0.0023 30.8 15.9 50 761-810 181-234 (248)
403 PF00244 14-3-3: 14-3-3 protei 72.8 81 0.0018 33.0 13.8 59 518-576 4-65 (236)
404 COG3629 DnrI DNA-binding trans 72.8 15 0.00032 39.4 8.3 61 642-702 155-215 (280)
405 KOG1310 WD40 repeat protein [G 71.5 14 0.00031 42.2 8.0 83 625-707 393-478 (758)
406 KOG4814 Uncharacterized conser 71.4 19 0.00041 42.3 9.0 86 644-729 358-450 (872)
407 COG1747 Uncharacterized N-term 69.7 2.2E+02 0.0048 33.0 17.1 170 513-706 97-291 (711)
408 COG3629 DnrI DNA-binding trans 69.6 44 0.00095 35.9 10.9 61 749-809 154-216 (280)
409 KOG3807 Predicted membrane pro 68.8 1.8E+02 0.0039 31.7 17.5 174 624-822 202-404 (556)
410 KOG2723 Uncharacterized conser 68.3 18 0.00038 37.3 7.3 92 216-314 6-106 (221)
411 PRK15180 Vi polysaccharide bio 66.9 19 0.00042 40.7 7.7 121 651-778 300-421 (831)
412 COG5187 RPN7 26S proteasome re 66.0 1.5E+02 0.0032 31.8 13.5 130 644-777 79-221 (412)
413 COG3947 Response regulator con 65.5 20 0.00043 38.2 7.1 58 643-700 282-339 (361)
414 COG3014 Uncharacterized protei 65.4 1.4E+02 0.003 32.7 13.4 96 628-738 43-152 (449)
415 PRK11619 lytic murein transgly 65.3 3.2E+02 0.007 33.3 38.8 118 423-543 37-157 (644)
416 PF11817 Foie-gras_1: Foie gra 64.3 29 0.00062 36.6 8.5 56 749-804 179-242 (247)
417 KOG0546 HSP90 co-chaperone CPR 64.1 8.4 0.00018 42.1 4.3 122 678-822 226-351 (372)
418 PF09670 Cas_Cas02710: CRISPR- 64.0 1.5E+02 0.0032 33.5 14.5 125 642-778 133-271 (379)
419 KOG2396 HAT (Half-A-TPR) repea 64.0 2.8E+02 0.0061 32.2 29.9 75 474-548 94-173 (568)
420 TIGR03504 FimV_Cterm FimV C-te 63.4 11 0.00024 28.3 3.6 23 387-410 5-27 (44)
421 KOG2114 Vacuolar assembly/sort 62.9 1.8E+02 0.0038 35.8 14.9 54 649-703 343-397 (933)
422 PF15015 NYD-SP12_N: Spermatog 62.8 59 0.0013 36.5 10.3 52 678-729 232-284 (569)
423 KOG0889 Histone acetyltransfer 61.9 7.1E+02 0.015 36.1 29.4 187 646-842 2742-2957(3550)
424 PRK11619 lytic murein transgly 61.7 3.7E+02 0.008 32.7 33.5 120 679-807 246-373 (644)
425 PF00244 14-3-3: 14-3-3 protei 61.4 82 0.0018 33.0 11.1 46 764-809 142-198 (236)
426 PF13041 PPR_2: PPR repeat fam 60.3 25 0.00054 26.6 5.3 38 749-786 4-44 (50)
427 PF10255 Paf67: RNA polymerase 59.8 2.2E+02 0.0047 32.4 14.6 123 710-837 125-268 (404)
428 COG4941 Predicted RNA polymera 58.5 2.9E+02 0.0062 30.5 14.7 29 657-685 213-241 (415)
429 PF15015 NYD-SP12_N: Spermatog 58.4 1.4E+02 0.0031 33.7 12.3 53 645-697 233-285 (569)
430 COG4455 ImpE Protein of avirul 56.8 44 0.00095 34.3 7.5 59 649-707 10-68 (273)
431 TIGR03504 FimV_Cterm FimV C-te 56.2 31 0.00068 25.9 4.9 25 519-543 3-27 (44)
432 COG5536 BET4 Protein prenyltra 56.0 91 0.002 33.2 9.9 111 734-849 97-232 (328)
433 KOG0686 COP9 signalosome, subu 55.5 1.8E+02 0.0039 32.8 12.5 103 734-836 133-255 (466)
434 PF10373 EST1_DNA_bind: Est1 D 54.9 47 0.001 35.2 8.3 61 500-560 1-62 (278)
435 KOG1497 COP9 signalosome, subu 54.8 1.6E+02 0.0035 32.0 11.6 94 383-478 105-211 (399)
436 smart00386 HAT HAT (Half-A-TPR 54.7 26 0.00056 23.2 4.1 28 794-821 1-28 (33)
437 COG5187 RPN7 26S proteasome re 54.0 3.1E+02 0.0068 29.5 13.6 118 688-808 89-220 (412)
438 cd02682 MIT_AAA_Arch MIT: doma 53.7 68 0.0015 27.1 7.1 19 429-447 16-34 (75)
439 PF12854 PPR_1: PPR repeat 53.0 27 0.00059 24.3 4.0 28 746-773 4-32 (34)
440 COG4455 ImpE Protein of avirul 52.7 1.3E+02 0.0027 31.2 10.0 59 524-582 10-69 (273)
441 PF10255 Paf67: RNA polymerase 51.9 37 0.0008 38.4 6.9 92 750-842 124-231 (404)
442 PF09670 Cas_Cas02710: CRISPR- 51.9 1.9E+02 0.0041 32.6 12.8 123 676-810 133-271 (379)
443 COG4941 Predicted RNA polymera 51.3 2.7E+02 0.0058 30.7 12.6 87 626-712 315-404 (415)
444 KOG2581 26S proteasome regulat 51.2 4.1E+02 0.0089 30.1 18.4 63 520-582 214-281 (493)
445 smart00299 CLH Clathrin heavy 50.5 2.2E+02 0.0047 26.6 12.0 37 651-687 18-54 (140)
446 COG3947 Response regulator con 50.3 66 0.0014 34.5 7.9 59 750-808 281-341 (361)
447 PF11817 Foie-gras_1: Foie gra 49.9 67 0.0015 33.8 8.3 62 708-773 179-243 (247)
448 smart00299 CLH Clathrin heavy 49.8 1.3E+02 0.0027 28.3 9.5 39 625-664 26-64 (140)
449 TIGR03362 VI_chp_7 type VI sec 49.3 3.9E+02 0.0083 29.2 16.6 146 652-809 111-279 (301)
450 KOG2063 Vacuolar assembly/sort 48.3 2.4E+02 0.0052 35.3 13.4 28 454-481 507-534 (877)
451 PF11822 DUF3342: Domain of un 47.1 7.1 0.00015 42.2 0.4 42 317-359 71-112 (317)
452 PF13041 PPR_2: PPR repeat fam 47.0 63 0.0014 24.3 5.6 37 516-552 4-42 (50)
453 smart00386 HAT HAT (Half-A-TPR 46.5 42 0.00091 22.1 4.2 28 654-681 1-28 (33)
454 KOG0687 26S proteasome regulat 45.7 4.4E+02 0.0096 28.9 13.2 28 675-702 105-132 (393)
455 PF10952 DUF2753: Protein of u 45.1 1.1E+02 0.0025 28.4 7.6 63 751-813 4-87 (140)
456 KOG4279 Serine/threonine prote 45.0 38 0.00082 40.5 5.7 165 673-843 200-399 (1226)
457 KOG2066 Vacuolar assembly/sort 44.8 6.8E+02 0.015 30.8 20.8 38 631-668 496-533 (846)
458 KOG0687 26S proteasome regulat 44.6 1.9E+02 0.0041 31.7 10.3 95 640-738 104-208 (393)
459 PF00651 BTB: BTB/POZ domain; 44.3 31 0.00067 30.7 4.1 30 321-350 81-110 (111)
460 KOG2075 Topoisomerase TOP1-int 42.1 31 0.00067 39.2 4.3 45 318-366 185-229 (521)
461 PRK12798 chemotaxis protein; R 42.0 5.7E+02 0.012 29.1 24.0 179 627-810 98-287 (421)
462 cd02682 MIT_AAA_Arch MIT: doma 41.7 1.7E+02 0.0037 24.8 7.7 18 758-775 16-33 (75)
463 COG3107 LppC Putative lipoprot 40.3 5.7E+02 0.012 30.0 13.8 158 644-817 67-240 (604)
464 PF12854 PPR_1: PPR repeat 40.0 57 0.0012 22.6 4.0 27 779-805 6-32 (34)
465 PF08238 Sel1: Sel1 repeat; I 39.8 54 0.0012 22.9 4.0 29 421-449 3-38 (39)
466 PF12739 TRAPPC-Trs85: ER-Golg 39.8 6.2E+02 0.013 28.9 16.5 161 643-811 211-401 (414)
467 COG5107 RNA14 Pre-mRNA 3'-end 39.6 6.4E+02 0.014 29.0 31.0 209 628-842 290-534 (660)
468 PRK12798 chemotaxis protein; R 39.3 6.3E+02 0.014 28.8 24.0 146 651-805 159-320 (421)
469 cd02680 MIT_calpain7_2 MIT: do 38.6 59 0.0013 27.5 4.5 34 763-809 2-35 (75)
470 PF11846 DUF3366: Domain of un 36.9 86 0.0019 31.5 6.5 49 764-812 127-176 (193)
471 cd02679 MIT_spastin MIT: domai 36.6 61 0.0013 27.7 4.3 24 753-776 13-36 (79)
472 PF08311 Mad3_BUB1_I: Mad3/BUB 36.5 3.6E+02 0.0077 25.1 11.8 42 766-807 81-126 (126)
473 KOG0686 COP9 signalosome, subu 36.4 3E+02 0.0064 31.1 10.5 154 675-835 151-329 (466)
474 PF04097 Nic96: Nup93/Nic96; 35.3 8.8E+02 0.019 29.3 19.1 118 677-822 417-546 (613)
475 smart00671 SEL1 Sel1-like repe 35.2 63 0.0014 22.0 3.7 29 421-449 3-35 (36)
476 PF04212 MIT: MIT (microtubule 34.5 71 0.0015 26.2 4.4 24 424-447 10-33 (69)
477 cd02681 MIT_calpain7_1 MIT: do 34.0 68 0.0015 27.2 4.2 19 429-447 16-34 (76)
478 COG3014 Uncharacterized protei 33.8 6.9E+02 0.015 27.7 17.2 43 406-448 112-154 (449)
479 PF14863 Alkyl_sulf_dimr: Alky 33.6 97 0.0021 29.7 5.7 44 677-720 73-117 (141)
480 KOG3342 Signal peptidase I [In 33.0 23 0.00049 33.8 1.3 20 217-236 80-101 (180)
481 PF05053 Menin: Menin; InterP 32.6 1.4E+02 0.0031 34.9 7.7 66 465-541 274-344 (618)
482 PF07163 Pex26: Pex26 protein; 32.4 6.3E+02 0.014 27.2 11.7 123 646-772 41-182 (309)
483 KOG0276 Vesicle coat complex C 32.3 1.5E+02 0.0034 34.9 7.8 28 749-776 667-694 (794)
484 PF04212 MIT: MIT (microtubule 32.0 1.1E+02 0.0023 25.1 5.1 24 753-776 10-33 (69)
485 PF01535 PPR: PPR repeat; Int 31.8 67 0.0015 20.9 3.3 26 751-776 3-28 (31)
486 TIGR02710 CRISPR-associated pr 31.7 4.6E+02 0.01 29.6 11.4 132 635-777 123-275 (380)
487 PF11846 DUF3366: Domain of un 30.9 1.1E+02 0.0025 30.6 6.2 50 531-580 127-176 (193)
488 KOG4318 Bicoid mRNA stability 30.7 1.2E+03 0.026 29.4 23.2 44 749-792 1019-1065(1088)
489 KOG0276 Vesicle coat complex C 30.5 4.6E+02 0.01 31.2 11.2 21 709-729 668-688 (794)
490 KOG1497 COP9 signalosome, subu 30.2 4.1E+02 0.0089 29.1 10.0 60 749-808 145-212 (399)
491 KOG1538 Uncharacterized conser 29.9 1.1E+03 0.023 28.6 22.0 113 647-776 710-832 (1081)
492 COG5107 RNA14 Pre-mRNA 3'-end 29.7 9.2E+02 0.02 27.8 31.6 84 651-738 408-493 (660)
493 PF04097 Nic96: Nup93/Nic96; 29.3 7.7E+02 0.017 29.8 13.8 23 422-444 417-439 (613)
494 PF10952 DUF2753: Protein of u 28.9 2E+02 0.0044 26.8 6.5 54 422-475 4-74 (140)
495 COG4259 Uncharacterized protei 28.9 1.9E+02 0.0041 25.9 6.1 44 779-822 71-114 (121)
496 TIGR00756 PPR pentatricopeptid 28.4 1.1E+02 0.0024 20.2 4.0 26 751-776 3-28 (35)
497 PHA02537 M terminase endonucle 28.3 2.1E+02 0.0045 29.9 7.5 90 684-778 93-208 (230)
498 PF05053 Menin: Menin; InterP 28.3 2.5E+02 0.0055 33.0 8.7 42 436-477 296-344 (618)
499 KOG1920 IkappaB kinase complex 28.2 5.3E+02 0.011 33.2 11.9 166 660-838 856-1041(1265)
500 cd02683 MIT_1 MIT: domain cont 28.0 95 0.0021 26.3 4.2 19 429-447 16-34 (77)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=9.3e-41 Score=362.26 Aligned_cols=401 Identities=18% Similarity=0.153 Sum_probs=321.0
Q ss_pred hhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhcc--hhhhhhHHHHHHHhCChHHHHHHHH
Q 003035 398 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLIN 475 (855)
Q Consensus 398 ~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~--~~a~~~la~~~~~~g~~~~A~~~l~ 475 (855)
+++..+.-..+++..| +-+++|.++|+++.++|++++|+..|+.+++.++ ..++.++|.++..+|+...|.+.+.
T Consensus 98 ~d~s~a~~~~a~r~~~---q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~ 174 (966)
T KOG4626|consen 98 LDKSSAGSLLAIRKNP---QGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFF 174 (966)
T ss_pred hhhhhhhhhhhhhccc---hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHH
Confidence 4444444444555543 4467999999999999999999999999998765 6789999999999999999999999
Q ss_pred hHHHcCCCchHHHHHHhh----ccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCCC-HhH
Q 003035 476 SIISEHKPTGWMYQERSL----YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDC 550 (855)
Q Consensus 476 ~~i~~~p~~~~~y~~~~~----~~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~-~~~ 550 (855)
.++..+|.+.-+....+. .+...+|...|.+|++.+|....+|.++|-++..+|+.-.|+..|.++++++|+ .++
T Consensus 175 ~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dA 254 (966)
T KOG4626|consen 175 EALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDA 254 (966)
T ss_pred HHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHH
Confidence 999999976443322222 234589999999999999999999999999999999999999999999999996 789
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHH
Q 003035 551 LELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVIN 630 (855)
Q Consensus 551 l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~ 630 (855)
+.++|.+|..++.++.|+..|.+++.+.|++.+.+++++.-+..+ +..+ -++..+.
T Consensus 255 YiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeq------G~ld------------------lAI~~Yk 310 (966)
T KOG4626|consen 255 YINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQ------GLLD------------------LAIDTYK 310 (966)
T ss_pred HhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEecc------ccHH------------------HHHHHHH
Confidence 999999999999999999999999999999988888775432111 0000 1344566
Q ss_pred HHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HH
Q 003035 631 QMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EA 709 (855)
Q Consensus 631 ~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a 709 (855)
++++..|.-+.++..+|..+-..|+..+|..+|.+++.+.|+.+++.++||.++..+|.+++|...|+++++.+|.+ .+
T Consensus 311 ral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa 390 (966)
T KOG4626|consen 311 RALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAA 390 (966)
T ss_pred HHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhh
Confidence 77777788888888888888888888888888888888888888888888888888888888888888888888887 77
Q ss_pred HHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHH
Q 003035 710 FFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQG 785 (855)
Q Consensus 710 ~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~ 785 (855)
+.++|.+|.++|++++|+.. |++++ .+.|. +++.|+|.+|..+|+.+.|+++|.+||.++ ..+++.|
T Consensus 391 ~nNLa~i~kqqgnl~~Ai~~----Ykeal-----rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsN 461 (966)
T KOG4626|consen 391 HNNLASIYKQQGNLDDAIMC----YKEAL-----RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSN 461 (966)
T ss_pred hhhHHHHHHhcccHHHHHHH----HHHHH-----hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhh
Confidence 88888888888888888777 88888 77777 788888888888888888888888888877 7777888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh-------cCCHHHHHHHHH
Q 003035 786 LARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE-------YSDREMAKNDLN 834 (855)
Q Consensus 786 lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~-------~g~~eeA~~~~~ 834 (855)
||.+|...|+..+|+..|+++++++||.++++-+|.. .-|+++-.+-+.
T Consensus 462 Lasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~ 517 (966)
T KOG4626|consen 462 LASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLV 517 (966)
T ss_pred HHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHHH
Confidence 8888888888888888888888888888888777776 345555444333
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-38 Score=344.54 Aligned_cols=398 Identities=16% Similarity=0.095 Sum_probs=351.4
Q ss_pred chhhHHHHHHHHHhhcccccchhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhcc--hhhh
Q 003035 377 GHASFLLYYFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSL 454 (855)
Q Consensus 377 ~~~~f~l~~~La~~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~--~~a~ 454 (855)
.+.....|--+|.++.+.|+ .+.|+.+++.+++..|+. .++|..+|..+..+|+.+.|..+|.+|+.+.| ..++
T Consensus 112 ~~q~ae~ysn~aN~~kerg~-~~~al~~y~~aiel~p~f---ida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~ 187 (966)
T KOG4626|consen 112 NPQGAEAYSNLANILKERGQ-LQDALALYRAAIELKPKF---IDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCAR 187 (966)
T ss_pred cchHHHHHHHHHHHHHHhch-HHHHHHHHHHHHhcCchh---hHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhh
Confidence 33333456678999999998 999999999999999887 57999999999999999999999999999877 5678
Q ss_pred hhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHh----hccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC
Q 003035 455 AGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERS----LYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQ 530 (855)
Q Consensus 455 ~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~----~~~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~ 530 (855)
..+|.+.-.+|+..+|..-|.++|+..|.-+-+|...+ .-++-..|+..|++|+++||+...+|+++|.+|-+.+.
T Consensus 188 s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 188 SDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARI 267 (966)
T ss_pred cchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhc
Confidence 88999999999999999999999999996533332222 11344689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhh
Q 003035 531 IRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADC 609 (855)
Q Consensus 531 ~~~A~~~~~k~l~~~p~-~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~ 609 (855)
++.|+..|.+++...|+ ..++.++|.+|..+|+.+-|+..|+++|+++|+++.++.+++.. +.+ .
T Consensus 268 ~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanA-Lkd----~--------- 333 (966)
T KOG4626|consen 268 FDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANA-LKD----K--------- 333 (966)
T ss_pred chHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHH-HHh----c---------
Confidence 99999999999999996 56778899999999999999999999999999998877766422 111 0
Q ss_pred HHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC
Q 003035 610 WIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGH 689 (855)
Q Consensus 610 ~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~ 689 (855)
+++ .++...+.+++...|+.+.+...+|.++.++|++++|...|+++++..|+.+.++.+||.+|.++|+
T Consensus 334 --------G~V--~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgn 403 (966)
T KOG4626|consen 334 --------GSV--TEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGN 403 (966)
T ss_pred --------cch--HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhccc
Confidence 111 1245677899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHH
Q 003035 690 REEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQ 766 (855)
Q Consensus 690 ~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~ 766 (855)
+++|+.+|++++++.|.+ +++.++|..|-.+|+.+.|++. |.+|| ..+|. +++.|||.+|.+.|+..+
T Consensus 404 l~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~----y~rAI-----~~nPt~AeAhsNLasi~kDsGni~~ 474 (966)
T KOG4626|consen 404 LDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQC----YTRAI-----QINPTFAEAHSNLASIYKDSGNIPE 474 (966)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHH----HHHHH-----hcCcHHHHHHhhHHHHhhccCCcHH
Confidence 999999999999999999 9999999999999999999999 99999 99999 999999999999999999
Q ss_pred HHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Q 003035 767 AENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQ 811 (855)
Q Consensus 767 A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p 811 (855)
|++.|+.+|+++ .+.++.|+..++---.++.+--+.+.|.+++..
T Consensus 475 AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~sivr 521 (966)
T KOG4626|consen 475 AIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSIVR 521 (966)
T ss_pred HHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 999999999999 889999999888777766666667777776643
No 3
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6e-31 Score=327.08 Aligned_cols=437 Identities=15% Similarity=0.103 Sum_probs=359.0
Q ss_pred chhhHHHHHHHHHhhcccccchhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhcc--hhhh
Q 003035 377 GHASFLLYYFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSL 454 (855)
Q Consensus 377 ~~~~f~l~~~La~~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~--~~a~ 454 (855)
.+........++..++..++ .++|+..++++.+..|+++ ..+..+|.++...|++++|+++|+++++..+ ..++
T Consensus 427 ~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 502 (899)
T TIGR02917 427 DPELGRADLLLILSYLRSGQ-FDKALAAAKKLEKKQPDNA---SLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAA 502 (899)
T ss_pred CCcchhhHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCCc---HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHH
Confidence 33333445566677777777 8888888888877666543 4678899999999999999999999987643 4567
Q ss_pred hhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHhh----ccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC
Q 003035 455 AGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSL----YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQ 530 (855)
Q Consensus 455 ~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~----~~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~ 530 (855)
..++.++...|+.++|...+++++...|.+...+...+. .+..++|+..++++++.+|++...+..++..+...|+
T Consensus 503 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 582 (899)
T TIGR02917 503 ANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQ 582 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCC
Confidence 888999999999999999999999999987666544432 2556889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhh
Q 003035 531 IRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADC 609 (855)
Q Consensus 531 ~~~A~~~~~k~l~~~p-~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~ 609 (855)
+++|+..++++++..| ++..+..+|.++...|++++|+..|++++..+|++......+ .......+++
T Consensus 583 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------~~~~~~~~~~----- 651 (899)
T TIGR02917 583 LKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLL------ADAYAVMKNY----- 651 (899)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH------HHHHHHcCCH-----
Confidence 9999999999998777 567788889999999999999999999999888765322111 1111111111
Q ss_pred HHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC
Q 003035 610 WIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGH 689 (855)
Q Consensus 610 ~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~ 689 (855)
..++..+.++++.+|.+...++.++.++...|++++|+..++.+.+..|.++..+..+|.++...|+
T Consensus 652 -------------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 718 (899)
T TIGR02917 652 -------------AKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKD 718 (899)
T ss_pred -------------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCC
Confidence 1256677888888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHH
Q 003035 690 REEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQA 767 (855)
Q Consensus 690 ~~eAl~~~~kal~~~p~~~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A 767 (855)
+++|+..|++++...|+...++.+|.++...|++++|... +++++ ...|+ .+++.+|.+|...|++++|
T Consensus 719 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~----~~~~l-----~~~~~~~~~~~~la~~~~~~g~~~~A 789 (899)
T TIGR02917 719 YPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKT----LEAWL-----KTHPNDAVLRTALAELYLAQKDYDKA 789 (899)
T ss_pred HHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHH----HHHHH-----HhCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 9999999999999988887778889999999999999998 88888 66666 8888899999999999999
Q ss_pred HHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh----cCCHHHHHHHHHHHHhcCC
Q 003035 768 ENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLDP 841 (855)
Q Consensus 768 ~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~----~g~~eeA~~~~~kAl~l~P 841 (855)
++.|+++++.. ++.++.++|+++...|+ .+|+.++++++++.|+++..+..+|. .|++++|+++|+++++++|
T Consensus 790 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 790 IKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 99999999888 88889999999999998 88999999999999999999888888 8999999999999999999
Q ss_pred CCcccchhhh
Q 003035 842 LRTYPYRYRA 851 (855)
Q Consensus 842 ~~~~~~~~~a 851 (855)
.+...+...|
T Consensus 869 ~~~~~~~~l~ 878 (899)
T TIGR02917 869 EAAAIRYHLA 878 (899)
T ss_pred CChHHHHHHH
Confidence 8877665443
No 4
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.9e-30 Score=318.88 Aligned_cols=462 Identities=14% Similarity=0.078 Sum_probs=323.4
Q ss_pred chhhHHHHHHHHHhhcccccchhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhcc--hhhh
Q 003035 377 GHASFLLYYFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSL 454 (855)
Q Consensus 377 ~~~~f~l~~~La~~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~--~~a~ 454 (855)
.+.....+..++.++...++ .++|...++++++.+|++. .++..+|.++...|++++|++.|+++++..+ ....
T Consensus 359 ~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 434 (899)
T TIGR02917 359 DPDDPAALSLLGEAYLALGD-FEKAAEYLAKATELDPENA---AARTQLGISKLSQGDPSEAIADLETAAQLDPELGRAD 434 (899)
T ss_pred CCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhH
Confidence 33334456667777777777 7778888888777766643 3566777778888888888888887776543 3445
Q ss_pred hhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHhh----ccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC
Q 003035 455 AGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSL----YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQ 530 (855)
Q Consensus 455 ~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~----~~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~ 530 (855)
..++..+...|+.++|...+.+++...|++...+...+. .++.++|+..|+++++.+|++..++..+|.++...|+
T Consensus 435 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 514 (899)
T TIGR02917 435 LLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGN 514 (899)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCC
Confidence 666777777888888888888877777776555443332 2455778888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHccCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccc--------hhHHHHHHHHHh
Q 003035 531 IRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS--------GDHLVKLLNHHV 601 (855)
Q Consensus 531 ~~~A~~~~~k~l~~~p-~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~--------~~~l~~ll~~~~ 601 (855)
+++|+..|++++...| +...+..++.++...|++++|+..+++++..+|++......+. .......+....
T Consensus 515 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 594 (899)
T TIGR02917 515 PDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAA 594 (899)
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8888888888887777 4566667777888888888888888888877776543211110 011111111111
Q ss_pred hcc-ChhhhHHHHhhhc-ccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 003035 602 RSW-SPADCWIKLYDRW-SSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVY 679 (855)
Q Consensus 602 ~~~-~~a~~~~~~~~~~-~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~ 679 (855)
... .....|..+.... ...+...++..+.++++.+|.++..+..++.++...|++++|+..|+++++.+|++.+.+..
T Consensus 595 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 674 (899)
T TIGR02917 595 DAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIG 674 (899)
T ss_pred HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 111 1112222111111 11122235566677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH-HHHHHHHHH
Q 003035 680 EGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG-QALNNLGSI 757 (855)
Q Consensus 680 lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~-~a~~~LG~~ 757 (855)
++.++...|++++|+..+++..+..|.. ..+..+|.++...|++++|+.. |++++ ...|+ ..+.++|.+
T Consensus 675 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~----~~~~~-----~~~~~~~~~~~l~~~ 745 (899)
T TIGR02917 675 LAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQA----YRKAL-----KRAPSSQNAIKLHRA 745 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHH----HHHHH-----hhCCCchHHHHHHHH
Confidence 7777777777777777777777777777 7777778888888888888888 88887 55555 677778888
Q ss_pred HHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh----cCCHHHHHH
Q 003035 758 YVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKN 831 (855)
Q Consensus 758 y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~----~g~~eeA~~ 831 (855)
+...|++++|++.++++++.. ++.+++.+|.++..+|++++|++.|+++++.+|+++.++..+|+ .|+ ++|+.
T Consensus 746 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~ 824 (899)
T TIGR02917 746 LLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALE 824 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHH
Confidence 888888888888888888777 77888888888888888888888888888888888888888887 677 77888
Q ss_pred HHHHHHhcCCCCcccchhhhc
Q 003035 832 DLNMATQLDPLRTYPYRYRAA 852 (855)
Q Consensus 832 ~~~kAl~l~P~~~~~~~~~a~ 852 (855)
.+++++++.|+++..+...|.
T Consensus 825 ~~~~~~~~~~~~~~~~~~~~~ 845 (899)
T TIGR02917 825 YAEKALKLAPNIPAILDTLGW 845 (899)
T ss_pred HHHHHHhhCCCCcHHHHHHHH
Confidence 888888888887766655543
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=4.8e-30 Score=307.12 Aligned_cols=420 Identities=13% Similarity=0.037 Sum_probs=257.0
Q ss_pred HHHHHHhhcccccchhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhcc--hhhhhhHHHHH
Q 003035 384 YYFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAK 461 (855)
Q Consensus 384 ~~~La~~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~--~~a~~~la~~~ 461 (855)
+.-+|..+...++ ++.|+..|+++++..|+. ..+.++|.+|+..|++++|++.|++|++.++ ..++..+|.+|
T Consensus 130 ~k~~G~~~~~~~~-~~~Ai~~y~~al~~~p~~----~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 130 LKEKGNKAYRNKD-FNKAIKLYSKAIECKPDP----VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHhcCCch----HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4456777888888 999999999999998863 4688999999999999999999999998765 46899999999
Q ss_pred HHhCChHHHHHHHHhHHHcCCCchHHHHHHhhccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHH
Q 003035 462 YKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRI 541 (855)
Q Consensus 462 ~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~~~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~ 541 (855)
..+|++++|+..+..+....+.+...............+...+..+++.+|.+...+..++..+ ...+...+...+...
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYL-QSFRPKPRPAGLEDS 283 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH-HHccCCcchhhhhcc
Confidence 9999999999999877665543321110000000112344455556666666655555554433 111122222222222
Q ss_pred HccCCCH-hHHHHHHHH---HHHcCCHHHHHHHHHHHHhcC---CchhhhhcccchhHHHHHHHHHhhccChhhhHHHHh
Q 003035 542 IVFKLSV-DCLELRAWL---FIAADDYESALRDTLALLALE---SNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLY 614 (855)
Q Consensus 542 l~~~p~~-~~l~lra~~---y~~~gd~~~A~~~~~~aL~~~---P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~ 614 (855)
...++.. ..+...+.. ....++|++|++.|++++..+ |+....+ ...+.+....++
T Consensus 284 ~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~------~~lg~~~~~~g~----------- 346 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIAL------NLRGTFKCLKGK----------- 346 (615)
T ss_pred cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHH------HHHHHHHHHcCC-----------
Confidence 2222211 111111111 122344555555555555432 2111100 000000000011
Q ss_pred hhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHH
Q 003035 615 DRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEAL 694 (855)
Q Consensus 615 ~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl 694 (855)
...++..+.++++.+|.....++.+|.++..+|++++|+..|+++++.+|+++++++.+|.+++..|++++|+
T Consensus 347 -------~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 419 (615)
T TIGR00990 347 -------HLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAG 419 (615)
T ss_pred -------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 1113344445555555555566666677777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHH
Q 003035 695 SRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCY 771 (855)
Q Consensus 695 ~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~ 771 (855)
..|+++++++|++ .+++.+|.++..+|++++|+.. |++++ ...|. .+++++|.++...|++++|++.|
T Consensus 420 ~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~----~~~al-----~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~ 490 (615)
T TIGR00990 420 KDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMAT----FRRCK-----KNFPEAPDVYNYYGELLLDQNKFDEAIEKF 490 (615)
T ss_pred HHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHH----HHHHH-----HhCCCChHHHHHHHHHHHHccCHHHHHHHH
Confidence 7777777777776 6677777777777777777777 77777 55555 66677777777777777777777
Q ss_pred HHHHhcc--cH------HHHHHHHHHHHH-cCCHHHHHHHHHHHHHHccCCHHHHHHHhh----cCCHHHHHHHHHHHHh
Q 003035 772 INALDIK--HT------RAHQGLARVYYL-KNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQ 838 (855)
Q Consensus 772 ~kAL~~~--~~------~a~~~lg~~~~~-~g~~~~A~~~~~kal~~~p~~~~a~~~lg~----~g~~eeA~~~~~kAl~ 838 (855)
++|+++. +. ..+.+.+.+++. .|++++|+..++++++++|++..++..+|. .|++++|+.+|++|++
T Consensus 491 ~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 491 DTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 7777665 11 112233333333 567777777777777777777777777776 6777777777777777
Q ss_pred cCCC
Q 003035 839 LDPL 842 (855)
Q Consensus 839 l~P~ 842 (855)
+.+.
T Consensus 571 l~~~ 574 (615)
T TIGR00990 571 LART 574 (615)
T ss_pred Hhcc
Confidence 6554
No 6
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.98 E-value=5.7e-29 Score=316.58 Aligned_cols=308 Identities=15% Similarity=0.118 Sum_probs=216.0
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHccCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHH
Q 003035 520 YRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLN 598 (855)
Q Consensus 520 ~~a~~~~~~~~~~~A~~~~~k~l~~~p-~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~ 598 (855)
.+|..++..|++++|+..|++++..+| +++++..+|.+|..+|++++|+..|++++..+|++...... ..+..
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~---~~ll~--- 347 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKW---ESLLK--- 347 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHH---HHHHH---
Confidence 457788999999999999999999999 68889999999999999999999999999999986421100 00000
Q ss_pred HHhhccChhhhHHHH--h-hhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 003035 599 HHVRSWSPADCWIKL--Y-DRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHE 675 (855)
Q Consensus 599 ~~~~~~~~a~~~~~~--~-~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~ 675 (855)
.+..|..+ . ......+...++..+.+++..+|.+..+++.+|.++..+|++++|++.|+++++.+|++..
T Consensus 348 -------~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~ 420 (1157)
T PRK11447 348 -------VNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTN 420 (1157)
T ss_pred -------hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 00000000 0 0001112223566677777777777777777777777777777777777777777777766
Q ss_pred HHHHHHHH------------------------------------------HHHCCCHHHHHHHHHHHHhccCCh-HHHHH
Q 003035 676 RLVYEGWI------------------------------------------LYDTGHREEALSRAEKSISIERTF-EAFFL 712 (855)
Q Consensus 676 ~~~~lg~~------------------------------------------~~~~g~~~eAl~~~~kal~~~p~~-~a~~~ 712 (855)
++..++.+ +...|++++|++.|+++++++|++ .+++.
T Consensus 421 a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~ 500 (1157)
T PRK11447 421 AVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYR 500 (1157)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 65444333 345677777777777777777777 77777
Q ss_pred HHHHHHHCCCCchhHHHHHHHHHHHhcCCCCC------------------------------------------------
Q 003035 713 KAYILADTNLDPESSTYVIQLLEEALRCPSDG------------------------------------------------ 744 (855)
Q Consensus 713 lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~------------------------------------------------ 744 (855)
+|.+|...|++++|+.. ++++++...+.
T Consensus 501 LA~~~~~~G~~~~A~~~----l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~ 576 (1157)
T PRK11447 501 LAQDLRQAGQRSQADAL----MRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQV 576 (1157)
T ss_pred HHHHHHHcCCHHHHHHH----HHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHH
Confidence 77777777777777777 66666321110
Q ss_pred ---------------------CCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHH
Q 003035 745 ---------------------LRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAA 799 (855)
Q Consensus 745 ---------------------~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A 799 (855)
..|. .++..+|.++.+.|++++|++.|+++++.+ ++.++.++|.++...|++++|
T Consensus 577 l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA 656 (1157)
T PRK11447 577 LETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAA 656 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 0111 345567777777778888888888877777 777777788887777888888
Q ss_pred HHHHHHHHHHccCCHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCCc
Q 003035 800 YDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLDPLRT 844 (855)
Q Consensus 800 ~~~~~kal~~~p~~~~a~~~lg~----~g~~eeA~~~~~kAl~l~P~~~ 844 (855)
++.++++++..|+++.++..+|. .|++++|+..|+++++..|+++
T Consensus 657 ~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 705 (1157)
T PRK11447 657 RAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQP 705 (1157)
T ss_pred HHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence 88888777777777777777777 7778888888888777766554
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=1.9e-28 Score=311.83 Aligned_cols=387 Identities=14% Similarity=0.067 Sum_probs=269.6
Q ss_pred hhhHhhhhcHHHHHHHHHHHHHhcc--hhhhhhHHHHHHHhCChHHHHHHHHhHHHcCCCchHH--------------HH
Q 003035 426 GCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWM--------------YQ 489 (855)
Q Consensus 426 G~~~l~~g~~~eA~~~~~~Al~~~~--~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~--------------y~ 489 (855)
|..++..|++++|+..|+++++..| ..++..+|.++..+|++++|+..++++++..|++... ..
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 5555666666666666666655432 3445566666666666666666666666655543210 00
Q ss_pred HHh----hccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCCC-HhHHHHHHHHHHHcCCH
Q 003035 490 ERS----LYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDY 564 (855)
Q Consensus 490 ~~~----~~~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~-~~~l~lra~~y~~~gd~ 564 (855)
..+ ..+..++|+..|+++++++|++..++..+|.++...|++++|+..|+++++.+|+ ..++..++.+|. .+++
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~ 434 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSP 434 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCH
Confidence 000 1133355666666666666666666666666666666666666666666665553 334444444443 2345
Q ss_pred HHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhh-hcccccccchHHHHHHHHHcCCCChHHH
Q 003035 565 ESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYD-RWSSVDDIGSLAVINQMLINDPGKSFLR 643 (855)
Q Consensus 565 ~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~-~~~~~~d~~al~~~~~~l~~~p~~~~~~ 643 (855)
++|+..++++....++.... ....+ ..+.+...-. .....+...++..+.++++.+|+++.++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~--------~~~~l--------~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~ 498 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDD--------IERSL--------QNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLT 498 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHH--------HHHHh--------hhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 55555554433221111000 00000 0000000000 0112233446788999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH-----------------------
Q 003035 644 FRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKS----------------------- 700 (855)
Q Consensus 644 ~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~ka----------------------- 700 (855)
+.+|.++.+.|++++|+..|+++++.+|++++.++.+|..+...|+.++|+..++++
T Consensus 499 ~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~ 578 (1157)
T PRK11447 499 YRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLE 578 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHH
Confidence 999999999999999999999999999999999998888888888888887776653
Q ss_pred -----------------HhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHH
Q 003035 701 -----------------ISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVE 760 (855)
Q Consensus 701 -----------------l~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~ 760 (855)
++.+|.+ ..++.+|.++...|++++|+.. |++++ ..+|+ +++.++|.+|..
T Consensus 579 ~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~----y~~al-----~~~P~~~~a~~~la~~~~~ 649 (1157)
T PRK11447 579 TANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAA----YQRVL-----TREPGNADARLGLIEVDIA 649 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHH----HHHHH-----HhCCCCHHHHHHHHHHHHH
Confidence 2346777 7889999999999999999999 99999 88887 999999999999
Q ss_pred cCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCH------HHHHHHhh----cCCHHH
Q 003035 761 CGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSA------SAFEKRSE----YSDREM 828 (855)
Q Consensus 761 ~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~------~a~~~lg~----~g~~ee 828 (855)
.|++++|++.|+++++.. ++.++..+|.++..+|++++|++.|+++++..|+++ .++..+|. .|++++
T Consensus 650 ~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~ 729 (1157)
T PRK11447 650 QGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQ 729 (1157)
T ss_pred CCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999987 788999999999999999999999999999877653 45666666 899999
Q ss_pred HHHHHHHHHh
Q 003035 829 AKNDLNMATQ 838 (855)
Q Consensus 829 A~~~~~kAl~ 838 (855)
|+..|++|+.
T Consensus 730 A~~~y~~Al~ 739 (1157)
T PRK11447 730 ALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHHh
Confidence 9999999985
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.97 E-value=5.2e-28 Score=289.58 Aligned_cols=390 Identities=12% Similarity=0.046 Sum_probs=294.3
Q ss_pred HHHHHHhhhhHhhhhcHHHHHHHHHHHHHhcch-hhhhhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHhhccCc
Q 003035 419 MLALHQLGCVMFEREEYKDACYYFEAAADAGHI-YSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLG 497 (855)
Q Consensus 419 ~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~~-~a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~~~~~ 497 (855)
+..+..+|..++..|+|++|+..|+++++..+. ..+..+|.+|..+|++++|+
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai-------------------------- 180 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVV-------------------------- 180 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHH--------------------------
Confidence 445778999999999999999999999987653 34677888888888775554
Q ss_pred chHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003035 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLAL 577 (855)
Q Consensus 498 ~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~ 577 (855)
.+++++++++|++..+++.+|.+|...|++++|+..|.+++..++........ .+. ..-...+...+..++..
T Consensus 181 ----~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~--~~~-~~l~~~a~~~~~~~l~~ 253 (615)
T TIGR00990 181 ----EDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQ--AVE-RLLKKFAESKAKEILET 253 (615)
T ss_pred ----HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHH--HHH-HHHHHHHHHHHHHHHhc
Confidence 45666677778888888888889999999999998888777655422111100 000 00113455556666666
Q ss_pred CCchhhhhcccchhHHHH--------HHHHHhh-ccChhhhHHHHhhhc----ccccccchHHHHHHHHHc---CCCChH
Q 003035 578 ESNYMMFHGRVSGDHLVK--------LLNHHVR-SWSPADCWIKLYDRW----SSVDDIGSLAVINQMLIN---DPGKSF 641 (855)
Q Consensus 578 ~P~~~~~~~~~~~~~l~~--------ll~~~~~-~~~~a~~~~~~~~~~----~~~~d~~al~~~~~~l~~---~p~~~~ 641 (855)
.|.+......++. .+.. .+..... .......+..++... .......++..+.++++. +|....
T Consensus 254 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~ 332 (615)
T TIGR00990 254 KPENLPSVTFVGN-YLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAI 332 (615)
T ss_pred CCCCCCCHHHHHH-HHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHH
Confidence 6664322111100 0000 0000000 000000111111100 001112356677788875 477888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHC
Q 003035 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADT 720 (855)
Q Consensus 642 ~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~ 720 (855)
++..+|.++..+|++++|+..|+++++++|+....++.+|.++...|++++|+..|+++++.+|++ .+++.+|.++...
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~ 412 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIK 412 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred CCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCH
Q 003035 721 NLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNEL 796 (855)
Q Consensus 721 g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~ 796 (855)
|++++|+.. |++++ .++|+ .++.++|.++..+|++++|+..|+++++.. ++.+++.+|.++..+|++
T Consensus 413 g~~~~A~~~----~~kal-----~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~ 483 (615)
T TIGR00990 413 GEFAQAGKD----YQKSI-----DLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKF 483 (615)
T ss_pred CCHHHHHHH----HHHHH-----HcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCH
Confidence 999999999 99999 88887 889999999999999999999999999988 899999999999999999
Q ss_pred HHHHHHHHHHHHHccCCHHHHHH------Hhh-----cCCHHHHHHHHHHHHhcCCCCcccchhhh
Q 003035 797 KAAYDEMTKLLEKAQYSASAFEK------RSE-----YSDREMAKNDLNMATQLDPLRTYPYRYRA 851 (855)
Q Consensus 797 ~~A~~~~~kal~~~p~~~~a~~~------lg~-----~g~~eeA~~~~~kAl~l~P~~~~~~~~~a 851 (855)
++|++.|++++++.|++...+.. .+. .|++++|+..++++++++|++...+...|
T Consensus 484 ~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la 549 (615)
T TIGR00990 484 DEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMA 549 (615)
T ss_pred HHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 99999999999999975433222 111 69999999999999999999987666554
No 9
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.95 E-value=2.2e-25 Score=266.88 Aligned_cols=347 Identities=10% Similarity=-0.024 Sum_probs=271.1
Q ss_pred hhhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHhh----ccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHHhC
Q 003035 454 LAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSL----YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEG 529 (855)
Q Consensus 454 ~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~----~~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~ 529 (855)
....+...+.+|+..+|...+..++...|++..++...+. .+..++|+..++++++++|++..++..+|.++...|
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Confidence 4445555666777777777777777777766554433321 244567777788888888888888888888888888
Q ss_pred CHHHHHHHHHHHHccCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhh
Q 003035 530 QIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPAD 608 (855)
Q Consensus 530 ~~~~A~~~~~k~l~~~p~-~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~ 608 (855)
++++|+..|++++..+|+ ...+..++.++..+|++++|+..+++++..+|+........ . .....+++
T Consensus 125 ~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-----~--~l~~~g~~---- 193 (656)
T PRK15174 125 QYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-----L--SFLNKSRL---- 193 (656)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-----H--HHHHcCCH----
Confidence 888888888888888884 66777788888888888888888888888888764322110 0 00001111
Q ss_pred hHHHHhhhcccccccchHHHHHHHHHcCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHC
Q 003035 609 CWIKLYDRWSSVDDIGSLAVINQMLINDPG-KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDT 687 (855)
Q Consensus 609 ~~~~~~~~~~~~~d~~al~~~~~~l~~~p~-~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~ 687 (855)
.+++..+.+++..+|. +.......+..+.+.|++++|+..|+++++.+|+++.+++.+|.++...
T Consensus 194 --------------~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~ 259 (656)
T PRK15174 194 --------------PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQS 259 (656)
T ss_pred --------------HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 1244556666666653 3334455677888999999999999999999999999999999999999
Q ss_pred CCHHH----HHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHH
Q 003035 688 GHREE----ALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVE 760 (855)
Q Consensus 688 g~~~e----Al~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~ 760 (855)
|++++ |+..|+++++++|++ .++..+|.++...|++++|+.. +++++ ...|+ .++.++|.++..
T Consensus 260 G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~----l~~al-----~l~P~~~~a~~~La~~l~~ 330 (656)
T PRK15174 260 GRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPL----LQQSL-----ATHPDLPYVRAMYARALRQ 330 (656)
T ss_pred CCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHH----HHHHH-----HhCCCCHHHHHHHHHHHHH
Confidence 99986 899999999999999 9999999999999999999999 99999 77777 888999999999
Q ss_pred cCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhhcCCHHHHHHHHHHHHh
Q 003035 761 CGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQ 838 (855)
Q Consensus 761 ~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~~g~~eeA~~~~~kAl~ 838 (855)
.|++++|+..|+++++.+ +..++..+|.++...|++++|+..|+++++.+|++.. .++++|...|.++++
T Consensus 331 ~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~--------~~~~ea~~~~~~~~~ 402 (656)
T PRK15174 331 VGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP--------QSFEEGLLALDGQIS 402 (656)
T ss_pred CCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch--------hhHHHHHHHHHHHHH
Confidence 999999999999999888 5566777899999999999999999999999998753 445677777777777
Q ss_pred cCCC
Q 003035 839 LDPL 842 (855)
Q Consensus 839 l~P~ 842 (855)
.-+.
T Consensus 403 ~~~~ 406 (656)
T PRK15174 403 AVNL 406 (656)
T ss_pred hcCC
Confidence 6543
No 10
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.95 E-value=1.7e-25 Score=267.97 Aligned_cols=344 Identities=10% Similarity=-0.035 Sum_probs=256.2
Q ss_pred hhHhhhhcHHHHHHHHHHHHHh--cchhhhhhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHhh----ccCcchH
Q 003035 427 CVMFEREEYKDACYYFEAAADA--GHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSL----YNLGREK 500 (855)
Q Consensus 427 ~~~l~~g~~~eA~~~~~~Al~~--~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~----~~~~~~A 500 (855)
...+..|++++|+..++.++.. ++..++..++.+....|++++|...++++++.+|+++.++...+. .+..++|
T Consensus 50 ~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~A 129 (656)
T PRK15174 50 IACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATV 129 (656)
T ss_pred HHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHH
Confidence 3344555555555555555543 334445555555555555555555555555555555444433322 1334566
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Q 003035 501 IVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESN 580 (855)
Q Consensus 501 ~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~ 580 (855)
+..|+++++++|++..++..++.++...|++++|+..+.+++...|++.........+...|++++|+..+++++..+|.
T Consensus 130 i~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~ 209 (656)
T PRK15174 130 ADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFAL 209 (656)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 66777777788888888888888999999999999999988888875433332234578889999999999998887763
Q ss_pred hhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHH--
Q 003035 581 YMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKA-- 658 (855)
Q Consensus 581 ~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~-- 658 (855)
..... .......... ..+...++..+.++++.+|+++.+++.+|.++...|++++
T Consensus 210 ~~~~~-----~~~l~~~l~~------------------~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~ 266 (656)
T PRK15174 210 ERQES-----AGLAVDTLCA------------------VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAK 266 (656)
T ss_pred cchhH-----HHHHHHHHHH------------------CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhH
Confidence 21100 0000000001 1111235667788888899999999999999999999986
Q ss_pred --HHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHH
Q 003035 659 --AMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLE 735 (855)
Q Consensus 659 --A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle 735 (855)
|+..|+++++.+|+++.++..+|.++..+|++++|+..++++++++|++ .++..+|.++...|++++|+.. |+
T Consensus 267 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~----l~ 342 (656)
T PRK15174 267 LQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDE----FV 342 (656)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH----HH
Confidence 8999999999999999999999999999999999999999999999999 9999999999999999999999 99
Q ss_pred HHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Q 003035 736 EALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQ 811 (855)
Q Consensus 736 ~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p 811 (855)
+++ ...|+ .++..+|.++...|++++|++.|+++++++ +. ..++++|+..|.++++..+
T Consensus 343 ~al-----~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~~~~ 405 (656)
T PRK15174 343 QLA-----REKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQISAVN 405 (656)
T ss_pred HHH-----HhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHHHHhcC
Confidence 999 77777 566678999999999999999999999998 32 3466789999999998775
Q ss_pred CCH
Q 003035 812 YSA 814 (855)
Q Consensus 812 ~~~ 814 (855)
...
T Consensus 406 ~~~ 408 (656)
T PRK15174 406 LPP 408 (656)
T ss_pred Ccc
Confidence 543
No 11
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.2e-24 Score=247.41 Aligned_cols=424 Identities=17% Similarity=0.105 Sum_probs=327.8
Q ss_pred HHhhcccccchhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhcc---hhhhhhHHHHHHHh
Q 003035 388 SQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH---IYSLAGLARAKYKV 464 (855)
Q Consensus 388 a~~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~---~~a~~~la~~~~~~ 464 (855)
+.-+...++ +..+..+.+-++........++..++.+|..|-.+|+|++|..+|.+++...+ ..+++|+|..|++.
T Consensus 277 An~fyfK~d-y~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~ 355 (1018)
T KOG2002|consen 277 ANHFYFKKD-YERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKR 355 (1018)
T ss_pred HHHHhhccc-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHh
Confidence 333334555 77888888888877666667788899999999999999999999999998643 56899999999999
Q ss_pred CChHHHHHHHHhHHHcCCCchHHHHHH-hhccC-------cchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHH
Q 003035 465 GQQYSAYKLINSIISEHKPTGWMYQER-SLYNL-------GREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAIS 536 (855)
Q Consensus 465 g~~~~A~~~l~~~i~~~p~~~~~y~~~-~~~~~-------~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~ 536 (855)
|+...|...++++++..|++....... .+|.. .++|...+.++++..|.+..+|..+|.++...+-+.. +.
T Consensus 356 ~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~ 434 (1018)
T KOG2002|consen 356 GDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LD 434 (1018)
T ss_pred chHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HH
Confidence 999999999999999999985543222 22322 2789999999999999999999999999876655555 99
Q ss_pred HHHHHHcc------CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCchhhhhcccchhHHHHHHHHHhhccC
Q 003035 537 EIDRIIVF------KLSVDCLELRAWLFIAADDYESALRDTLALLAL-----ESNYMMFHGRVSGDHLVKLLNHHVRSWS 605 (855)
Q Consensus 537 ~~~k~l~~------~p~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~-----~P~~~~~~~~~~~~~l~~ll~~~~~~~~ 605 (855)
.|.+++.+ .+.++.+...|..++.+|+++.|...+..++.. +++.. -..++...+.+..+.+....+.
T Consensus 435 ~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~-~~~~lt~~YNlarl~E~l~~~~ 513 (1018)
T KOG2002|consen 435 AYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG-KSTNLTLKYNLARLLEELHDTE 513 (1018)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc-ccchhHHHHHHHHHHHhhhhhh
Confidence 99999841 235788889999999999999999999999976 22221 0011222333444444433333
Q ss_pred hh---------------hhHHHHhhh-cccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003035 606 PA---------------DCWIKLYDR-WSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH 669 (855)
Q Consensus 606 ~a---------------~~~~~~~~~-~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~ 669 (855)
.+ +|++.+.-. -.......+...+..++..+..++.++-..|.+++...++.-|.+-|+.+++.
T Consensus 514 ~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~ 593 (1018)
T KOG2002|consen 514 VAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKK 593 (1018)
T ss_pred HHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhh
Confidence 22 222222100 01123334556677778888888888888887788777777777766666653
Q ss_pred CC--CcHHHHHHHHHHHHH------------CCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHH
Q 003035 670 SS--SEHERLVYEGWILYD------------TGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLL 734 (855)
Q Consensus 670 ~p--~~~~~~~~lg~~~~~------------~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~ll 734 (855)
-. +++.+...||+++.. .+.+++|++.|.++|+.+|.+ .+-+.+|.++...|++.+|... |
T Consensus 594 ~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dI----F 669 (1018)
T KOG2002|consen 594 TSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDI----F 669 (1018)
T ss_pred hccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHH----H
Confidence 22 345566777776653 356899999999999999999 9999999999999999999999 8
Q ss_pred HHHhcCCCCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 003035 735 EEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDIK----HTRAHQGLARVYYLKNELKAAYDEMTKLLEK 809 (855)
Q Consensus 735 e~al~~~~~~~~p~-~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~----~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~ 809 (855)
.+..++.. .. ++|.|+|.||+.+|+|-.|+++|+.+++.. +..++..||++++..|++.+|.++..+|+..
T Consensus 670 sqVrEa~~----~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 670 SQVREATS----DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHh----hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 88873222 11 799999999999999999999999999876 7899999999999999999999999999999
Q ss_pred ccCCHHHHHHHhh
Q 003035 810 AQYSASAFEKRSE 822 (855)
Q Consensus 810 ~p~~~~a~~~lg~ 822 (855)
.|.++....++|.
T Consensus 746 ~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 746 APSNTSVKFNLAL 758 (1018)
T ss_pred CCccchHHhHHHH
Confidence 9999999998887
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=8.2e-25 Score=267.74 Aligned_cols=445 Identities=9% Similarity=-0.039 Sum_probs=279.9
Q ss_pred HHHHHHhhcccccchhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhcchhhhhhHHHHHHH
Q 003035 384 YYFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYK 463 (855)
Q Consensus 384 ~~~La~~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~~~a~~~la~~~~~ 463 (855)
++..|..+...|+ +++|+..|+++++.+|++ ..+++.|+.+|+.+|++++|+..++++++.++....+.+...-+
T Consensus 47 ~f~~a~~~~~~Gd-~~~A~~~l~~Al~~dP~n---~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i- 121 (987)
T PRK09782 47 RLDKALKAQKNND-EATAIREFEYIHQQVPDN---IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI- 121 (987)
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh-
Confidence 4555666666677 889999999999999988 35778999999999999999999999998877655444333222
Q ss_pred hCChHHHHHHHHhHHHcCCCchHHHHHHhh---------ccCcchHHHHHHHHHHhCCC--CchhHHHHHHHHHHhCCHH
Q 003035 464 VGQQYSAYKLINSIISEHKPTGWMYQERSL---------YNLGREKIVDLNYASELDPT--LSFPYKYRAVAKMEEGQIR 532 (855)
Q Consensus 464 ~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~---------~~~~~~A~~~l~~a~~ldP~--~~~a~~~~a~~~~~~~~~~ 532 (855)
+++.+|+..++++++.+|++...+...+. |...+.|.+.++ .-.+.|+ .....+.++.+|..+|+++
T Consensus 122 -~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~ 199 (987)
T PRK09782 122 -PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWS 199 (987)
T ss_pred -ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHH
Confidence 88889999999999999998776644433 444455666565 3333343 3335566688999999999
Q ss_pred HHHHHHHHHHccCCC-HhHHHHHH-------------------------------HHHHHcCCHHHHHHHHHHHHhcC--
Q 003035 533 AAISEIDRIIVFKLS-VDCLELRA-------------------------------WLFIAADDYESALRDTLALLALE-- 578 (855)
Q Consensus 533 ~A~~~~~k~l~~~p~-~~~l~lra-------------------------------~~y~~~gd~~~A~~~~~~aL~~~-- 578 (855)
+|+..+.++++.+|. .+....++ ..|.+.|+.++|...+++.=..+
T Consensus 200 ~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~ 279 (987)
T PRK09782 200 QADTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTT 279 (987)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccC
Confidence 999999888888773 33233333 34455555555554444432222
Q ss_pred -Cchhhh---hcccchh---------------H----H--HH-------------H-----------HH--HHhh---cc
Q 003035 579 -SNYMMF---HGRVSGD---------------H----L--VK-------------L-----------LN--HHVR---SW 604 (855)
Q Consensus 579 -P~~~~~---~~~~~~~---------------~----l--~~-------------l-----------l~--~~~~---~~ 604 (855)
|..... ..+.+.. . + .. + .+ ...+ ..
T Consensus 280 ~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 359 (987)
T PRK09782 280 DAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKA 359 (987)
T ss_pred CCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchh
Confidence 221110 0000000 0 0 00 0 00 0000 00
Q ss_pred ChhhhHHHHhhh------------------------------------------------------cccccc--------
Q 003035 605 SPADCWIKLYDR------------------------------------------------------WSSVDD-------- 622 (855)
Q Consensus 605 ~~a~~~~~~~~~------------------------------------------------------~~~~~d-------- 622 (855)
..+..|..+|.. ..+.++
T Consensus 360 ~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~ 439 (987)
T PRK09782 360 EALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILS 439 (987)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhc
Confidence 000011111111 000000
Q ss_pred ------------------cchHHHHHHHHHcCCC--ChHHHHHHHHHHH-------------------------------
Q 003035 623 ------------------IGSLAVINQMLINDPG--KSFLRFRQSLLLL------------------------------- 651 (855)
Q Consensus 623 ------------------~~al~~~~~~l~~~p~--~~~~~~~~a~~l~------------------------------- 651 (855)
......+..++..+|. ++.+++.+|.++.
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al 519 (987)
T PRK09782 440 KPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDAWQHRAVAYQA 519 (987)
T ss_pred cccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 0001122233334455 5555555554444
Q ss_pred -HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHH
Q 003035 652 -RLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTY 729 (855)
Q Consensus 652 -~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~ 729 (855)
..|++++|+..|+++....|.+ ..++.+|.++...|++++|+..|+++++.+|++ ..+..++..+...|++++|+..
T Consensus 520 ~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~ 598 (987)
T PRK09782 520 YQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALND 598 (987)
T ss_pred HHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4555555555555554443332 334555666666666666666666666666665 5555555555566777777777
Q ss_pred HHHHHHHHhcCCCCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003035 730 VIQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKL 806 (855)
Q Consensus 730 ~~~lle~al~~~~~~~~p~-~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~ka 806 (855)
|++++ ..+|+ .++.++|.++.+.|++++|+..|+++++++ ++.++.++|.++...|++++|++.|+++
T Consensus 599 ----~~~AL-----~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~A 669 (987)
T PRK09782 599 ----LTRSL-----NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERA 669 (987)
T ss_pred ----HHHHH-----HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 77777 66666 778888888888888888888888888888 7888888888888888888888888888
Q ss_pred HHHccCCHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCCcc
Q 003035 807 LEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLDPLRTY 845 (855)
Q Consensus 807 l~~~p~~~~a~~~lg~----~g~~eeA~~~~~kAl~l~P~~~~ 845 (855)
++.+|+++.+++++|. .|++++|+..|++|++++|+...
T Consensus 670 L~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~ 712 (987)
T PRK09782 670 HKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQAL 712 (987)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCch
Confidence 8888888888888888 88888888888888888887654
No 13
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.95 E-value=6.6e-25 Score=267.95 Aligned_cols=409 Identities=12% Similarity=-0.033 Sum_probs=307.0
Q ss_pred hhHhhhhcHHHHHHHHHHHHHhcchh--hhhhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHhh----ccCcchH
Q 003035 427 CVMFEREEYKDACYYFEAAADAGHIY--SLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSL----YNLGREK 500 (855)
Q Consensus 427 ~~~l~~g~~~eA~~~~~~Al~~~~~~--a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~----~~~~~~A 500 (855)
.+..-.|++++|++.|+++....+.. ++..+|.++..+|+..+|...++++++..|++.+++...+. .+..++|
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA 102 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEA 102 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 45566777888887777776544433 37777777788888888888888877777777665543332 2455778
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 003035 501 IVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALES 579 (855)
Q Consensus 501 ~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~-~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P 579 (855)
+..++++++.+|++.. +..+|.++...|++++|+..++++++..|+ ++.+..++.++...|+.+.|+..++++.. .|
T Consensus 103 ~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p 180 (765)
T PRK10049 103 LVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TP 180 (765)
T ss_pred HHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CH
Confidence 8888888888888888 888999999999999999999999999994 66777788899999999999999988776 66
Q ss_pred chhhhhcccchhHHHHHHHHHhh-ccChhhhHHHHhhhcccccccchHHHHHHHHHcC---CCChH----HHHHHHHHHH
Q 003035 580 NYMMFHGRVSGDHLVKLLNHHVR-SWSPADCWIKLYDRWSSVDDIGSLAVINQMLIND---PGKSF----LRFRQSLLLL 651 (855)
Q Consensus 580 ~~~~~~~~~~~~~l~~ll~~~~~-~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~---p~~~~----~~~~~a~~l~ 651 (855)
+.... +........+..... ....... + .....+++.+..+++.. |.... +++.....++
T Consensus 181 ~~~~~---l~~~~~~~~~r~~~~~~~~~~~r----~-----~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll 248 (765)
T PRK10049 181 AEKRD---LEADAAAELVRLSFMPTRSEKER----Y-----AIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL 248 (765)
T ss_pred HHHHH---HHHHHHHHHHHhhcccccChhHH----H-----HHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH
Confidence 53110 000000000000000 0000000 0 00012455566666543 43322 1121122356
Q ss_pred HcCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-----HHHHHHHHHHHHCCCCch
Q 003035 652 RLNCQKAAMRCLRLARNHSSSE-HERLVYEGWILYDTGHREEALSRAEKSISIERTF-----EAFFLKAYILADTNLDPE 725 (855)
Q Consensus 652 ~~g~~~~A~~~l~~al~~~p~~-~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-----~a~~~lg~~~~~~g~~~~ 725 (855)
..|++++|+..|+++++..|.. ..+...+|.++..+|++++|+..|+++++.+|.. .....++.++...|++++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence 8899999999999999986542 2345557999999999999999999999988754 467778889999999999
Q ss_pred hHHHHHHHHHHHhcCCCC--------CCCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHH
Q 003035 726 SSTYVIQLLEEALRCPSD--------GLRKG----QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYY 791 (855)
Q Consensus 726 A~~~~~~lle~al~~~~~--------~~~p~----~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~ 791 (855)
|+.. ++++.+.... ...|+ .++..+|.++...|++++|++.+++++... ++.++..+|.++.
T Consensus 329 A~~~----l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 329 ALTV----TAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ 404 (765)
T ss_pred HHHH----HHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999 9988843210 11122 577899999999999999999999999998 9999999999999
Q ss_pred HcCCHHHHHHHHHHHHHHccCCHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCCcccchhhhcc
Q 003035 792 LKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLDPLRTYPYRYRAAE 853 (855)
Q Consensus 792 ~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~----~g~~eeA~~~~~kAl~l~P~~~~~~~~~a~~ 853 (855)
.+|++++|++.++++++++|+++.++..+|. .|++++|+..++++++.+|+++.+.+++.+.
T Consensus 405 ~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 405 ARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999 8999999999999999999999999987765
No 14
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.1e-25 Score=236.51 Aligned_cols=212 Identities=17% Similarity=0.176 Sum_probs=194.0
Q ss_pred ccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 003035 620 VDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEK 699 (855)
Q Consensus 620 ~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~k 699 (855)
.+..++...++.++..+|....+|..+|.+|+.+++.++-.+.|.+|..++|.++++|+.+|++++-++++++|+..|++
T Consensus 340 g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred CCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 34456778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003035 700 SISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALD 776 (855)
Q Consensus 700 al~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~ 776 (855)
+++++|++ .+|..++.+.+++++++++... |+.++ ...|. +.++..|.++.+++++++|++.|.+|++
T Consensus 420 ai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~----Fee~k-----kkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 420 AISLDPENAYAYIQLCCALYRQHKIAESMKT----FEEAK-----KKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HhhcChhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHH-----HhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 99999999 9999999999999999999999 99999 88888 9999999999999999999999999999
Q ss_pred cc--------cHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHccCCHHHHHHHhh----cCCHHHHHHHHHHHHhcC
Q 003035 777 IK--------HTRAHQGLARVYY-LKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLD 840 (855)
Q Consensus 777 ~~--------~~~a~~~lg~~~~-~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~----~g~~eeA~~~~~kAl~l~ 840 (855)
+. ++..+.+-|.+.. -.+++..|+..+++|++++|..-.++..+|. +|+.++|+++|+++..+.
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred hccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 87 2333334343322 3489999999999999999999999999999 999999999999998773
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=2.3e-23 Score=255.08 Aligned_cols=451 Identities=13% Similarity=0.054 Sum_probs=327.3
Q ss_pred chhhHHHHHHHHHhhcccccchhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhh-hhcHHHHHHHHHHHHHhcchhhhh
Q 003035 377 GHASFLLYYFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFE-REEYKDACYYFEAAADAGHIYSLA 455 (855)
Q Consensus 377 ~~~~f~l~~~La~~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~-~g~~~eA~~~~~~Al~~~~~~a~~ 455 (855)
.|...++.+.+.++|...++ ++.++.+++++.+..|.+. .....||.+|.+ .++ ++|..+++..++ .+.....
T Consensus 178 ~~~~~vL~L~~~rlY~~l~d-w~~Ai~lL~~L~k~~pl~~---~~~~~L~~ay~q~l~~-~~a~al~~~~lk-~d~~l~~ 251 (987)
T PRK09782 178 SPEGKTLRTDLLQRAIYLKQ-WSQADTLYNEARQQNTLSA---AERRQWFDVLLAGQLD-DRLLALQSQGIF-TDPQSRI 251 (987)
T ss_pred CCCcHHHHHHHHHHHHHHhC-HHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhhCH-HHHHHHhchhcc-cCHHHHH
Confidence 33456677778999999998 9999999999999877764 346678999988 477 999999876444 5666788
Q ss_pred hHHHHHHHhCChHHHHHHHHhHHHcCCC----chHHHHHHhhccC----------------------------cchHHHH
Q 003035 456 GLARAKYKVGQQYSAYKLINSIISEHKP----TGWMYQERSLYNL----------------------------GREKIVD 503 (855)
Q Consensus 456 ~la~~~~~~g~~~~A~~~l~~~i~~~p~----~~~~y~~~~~~~~----------------------------~~~A~~~ 503 (855)
.++..|...|+.++|...+.+.-...+. ..|.|........ .......
T Consensus 252 ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (987)
T PRK09782 252 TYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDA 331 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHH
Confidence 8999999999999999888876544333 3444432111000 0011111
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchh
Q 003035 504 LNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYM 582 (855)
Q Consensus 504 l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p-~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~ 582 (855)
-++....+|.+.. ...+....+..+.+.+|.+.........| +++.+...++.....|++++|...++.++...++-.
T Consensus 332 ~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 410 (987)
T PRK09782 332 AQKLLATLPANEM-LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDAR 410 (987)
T ss_pred HHHHhcCCCcchH-HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccc
Confidence 2333455666664 33333444555667777777777666656 566666666777777777777777777766432210
Q ss_pred h---hh----------cccchh-HHHH-------------------------HHHHHhhc-cC--hhhhHH---------
Q 003035 583 M---FH----------GRVSGD-HLVK-------------------------LLNHHVRS-WS--PADCWI--------- 611 (855)
Q Consensus 583 ~---~~----------~~~~~~-~l~~-------------------------ll~~~~~~-~~--~a~~~~--------- 611 (855)
. .. ..+... .... .+...... .. .+..|.
T Consensus 411 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~ 490 (987)
T PRK09782 411 LSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDT 490 (987)
T ss_pred cCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhC
Confidence 0 00 000000 0000 00000000 00 000000
Q ss_pred ----------HH--------------hhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003035 612 ----------KL--------------YDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLAR 667 (855)
Q Consensus 612 ----------~~--------------~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al 667 (855)
+. +......+..+++..+.+++...|. ...++..|.++.+.|++++|+..|++++
T Consensus 491 ~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL 569 (987)
T PRK09782 491 LPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAE 569 (987)
T ss_pred CcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 00 0000111122234445555555444 4456788889999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCH
Q 003035 668 NHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK 747 (855)
Q Consensus 668 ~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p 747 (855)
+.+|+....+..++.....+|++++|+..|+++++++|+..+++++|.++.+.|++++|+.. |++++ .++|
T Consensus 570 ~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~----l~~AL-----~l~P 640 (987)
T PRK09782 570 QRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSD----LRAAL-----ELEP 640 (987)
T ss_pred hcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHH----HHHHH-----HhCC
Confidence 99999998888888888889999999999999999999669999999999999999999999 99999 8899
Q ss_pred H--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh-
Q 003035 748 G--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE- 822 (855)
Q Consensus 748 ~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~- 822 (855)
+ .+++++|.++...|++++|++.|+++++++ ++.+++++|+++..+|++++|+..++++++++|+++.+....|+
T Consensus 641 d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~ 720 (987)
T PRK09782 641 NNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQ 720 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHH
Confidence 8 999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred ---cCCHHHHHHHHHHHHhcCCCCc
Q 003035 823 ---YSDREMAKNDLNMATQLDPLRT 844 (855)
Q Consensus 823 ---~g~~eeA~~~~~kAl~l~P~~~ 844 (855)
..+++.|.+.++++...+|+.+
T Consensus 721 ~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 721 NQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHHHHHHHHHHHHHhhcCccch
Confidence 7789999999999999999876
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.94 E-value=3e-23 Score=253.44 Aligned_cols=395 Identities=13% Similarity=0.028 Sum_probs=315.9
Q ss_pred HhhcccccchhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhcc--hhhhhhHHHHHHHhCC
Q 003035 389 QVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQ 466 (855)
Q Consensus 389 ~~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~--~~a~~~la~~~~~~g~ 466 (855)
+++.-.++ .++|+..++++...+|.+ +.++..+|.++...|++++|+..|+++++..| ..++..++.++...|+
T Consensus 23 ~ia~~~g~-~~~A~~~~~~~~~~~~~~---a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 23 QIALWAGQ-DAEVITVYNRYRVHMQLP---ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHcCC-HHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 45555666 889999998887655544 44688999999999999999999999998754 4678899999999999
Q ss_pred hHHHHHHHHhHHHcCCCchHHHHHHhh----ccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHH
Q 003035 467 QYSAYKLINSIISEHKPTGWMYQERSL----YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRII 542 (855)
Q Consensus 467 ~~~A~~~l~~~i~~~p~~~~~y~~~~~----~~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l 542 (855)
..+|+..++++++.+|++.. +...+. .+..++|+..++++++++|++..++..+|.++...++.++|+..+++++
T Consensus 99 ~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 99 YDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDAN 177 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCC
Confidence 99999999999999999988 655543 3667899999999999999999999999999999999999999999888
Q ss_pred ccCCCH-h-----HHHHHHHHHHHc-----CCH---HHHHHHHHHHHhcCCchhhhhccc---chhHHHHHHHHHhhccC
Q 003035 543 VFKLSV-D-----CLELRAWLFIAA-----DDY---ESALRDTLALLALESNYMMFHGRV---SGDHLVKLLNHHVRSWS 605 (855)
Q Consensus 543 ~~~p~~-~-----~l~lra~~y~~~-----gd~---~~A~~~~~~aL~~~P~~~~~~~~~---~~~~l~~ll~~~~~~~~ 605 (855)
. .|+. . ....+..++... +++ ++|++.++++++..|.++...... ..+.+..++ .. ++
T Consensus 178 ~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll-~~-g~-- 252 (765)
T PRK10049 178 L-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL-AR-DR-- 252 (765)
T ss_pred C-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH-Hh-hh--
Confidence 6 5532 1 111122233222 334 789999999997655443221110 000011111 00 11
Q ss_pred hhhhHHHHhhhcccccccchHHHHHHHHHcCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc----HHHHHHH
Q 003035 606 PADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKS-FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE----HERLVYE 680 (855)
Q Consensus 606 ~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~-~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~----~~~~~~l 680 (855)
...++..+.++++..|..+ .+....|.+++.+|++++|+..|+++++.+|.+ .+....+
T Consensus 253 ----------------~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L 316 (765)
T PRK10049 253 ----------------YKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADL 316 (765)
T ss_pred ----------------HHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHH
Confidence 1224566777777764322 244446889999999999999999999998876 4567788
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhccCC---------------h-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCC
Q 003035 681 GWILYDTGHREEALSRAEKSISIERT---------------F-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDG 744 (855)
Q Consensus 681 g~~~~~~g~~~eAl~~~~kal~~~p~---------------~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~ 744 (855)
+.++..+|++++|++.++++.+.+|. . .++..+|.++...|++++|++. +++++ .
T Consensus 317 ~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~----l~~al-----~ 387 (765)
T PRK10049 317 FYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR----ARELA-----Y 387 (765)
T ss_pred HHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH----HHHHH-----H
Confidence 88999999999999999999998762 2 5778999999999999999999 99999 7
Q ss_pred CCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHH
Q 003035 745 LRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFE 818 (855)
Q Consensus 745 ~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~ 818 (855)
..|+ .++..+|.++...|++++|++.++++++++ ++.+++.+|.++...|++++|+..++++++..|+++.+..
T Consensus 388 ~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 388 NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 7887 999999999999999999999999999999 8999999999999999999999999999999999998754
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.93 E-value=3.6e-23 Score=237.51 Aligned_cols=387 Identities=14% Similarity=0.100 Sum_probs=318.4
Q ss_pred hhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhcch---hhhhhHHHHHHHhCChHHHHHHH
Q 003035 398 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHI---YSLAGLARAKYKVGQQYSAYKLI 474 (855)
Q Consensus 398 ~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~~---~a~~~la~~~~~~g~~~~A~~~l 474 (855)
.+.|.+.|..+++..|++ ..++.-.|++.+.+|+|..|+.+|++|+.+.|. ....++|-+..+.|+.+.|+..+
T Consensus 146 ~~~A~a~F~~Vl~~sp~N---il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDN---ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCCcc---hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHH
Confidence 578889999999988887 456777889999999999999999999987543 45678889999999999999999
Q ss_pred HhHHHcCCCchHHHHHHhhc----c---CcchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCC-
Q 003035 475 NSIISEHKPTGWMYQERSLY----N---LGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL- 546 (855)
Q Consensus 475 ~~~i~~~p~~~~~y~~~~~~----~---~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p- 546 (855)
..+++.+|.+..++...+.+ . ...+++..+.++..++|.++.+...+|..++..|+|..+.....-++....
T Consensus 223 ~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 223 ERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 99999999998887766643 1 236889999999999999999999999999999999999999999987553
Q ss_pred ---CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhccccccc
Q 003035 547 ---SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDI 623 (855)
Q Consensus 547 ---~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~ 623 (855)
-.+.++.+|..|.++|||++|..+|.+++..+|++..
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~---------------------------------------- 342 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFV---------------------------------------- 342 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcc----------------------------------------
Confidence 2466888999999999999999999999988887521
Q ss_pred chHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC----CHHHHHHHHHH
Q 003035 624 GSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTG----HREEALSRAEK 699 (855)
Q Consensus 624 ~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g----~~~eAl~~~~k 699 (855)
..++.+|.+++..|+++.|..+|++.++..|++.+....+|.+|...+ ..+.|..+..+
T Consensus 343 -----------------l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K 405 (1018)
T KOG2002|consen 343 -----------------LPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGK 405 (1018)
T ss_pred -----------------ccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHH
Confidence 123456778888888888888888888888888888888888888775 57888888888
Q ss_pred HHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003035 700 SISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPS--DGLRKGQALNNLGSIYVECGKLDQAENCYINALD 776 (855)
Q Consensus 700 al~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~--~~~~p~~a~~~LG~~y~~~g~~~~A~~~~~kAL~ 776 (855)
+++..|.+ ++|..+|.+|....-+.. +.. |.+|+.... ...-|-+.++|+|..++..|++.+|...|.+|+.
T Consensus 406 ~~~~~~~d~~a~l~laql~e~~d~~~s-L~~----~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~ 480 (1018)
T KOG2002|consen 406 VLEQTPVDSEAWLELAQLLEQTDPWAS-LDA----YGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALG 480 (1018)
T ss_pred HHhcccccHHHHHHHHHHHHhcChHHH-HHH----HHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhh
Confidence 88888888 888888888877766555 666 777762211 1223338888888888888888888888888887
Q ss_pred c---c---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh----cCCHHHHHHHHHHHHhcC
Q 003035 777 I---K---------HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLD 840 (855)
Q Consensus 777 ~---~---------~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~----~g~~eeA~~~~~kAl~l~ 840 (855)
. . +....||+|+++...+++..|.+.|..+++.+|.+.++|..+|. .++..+|...++.+++.|
T Consensus 481 ~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d 560 (1018)
T KOG2002|consen 481 KLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID 560 (1018)
T ss_pred hhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc
Confidence 6 1 12347888888888888888888888888888888888888875 688888888888888888
Q ss_pred CCCcccchh
Q 003035 841 PLRTYPYRY 849 (855)
Q Consensus 841 P~~~~~~~~ 849 (855)
..++-++-+
T Consensus 561 ~~np~arsl 569 (1018)
T KOG2002|consen 561 SSNPNARSL 569 (1018)
T ss_pred cCCcHHHHH
Confidence 887766654
No 18
>PHA02790 Kelch-like protein; Provisional
Probab=99.93 E-value=1.6e-25 Score=258.76 Aligned_cols=166 Identities=14% Similarity=0.150 Sum_probs=145.1
Q ss_pred CcEEEEEcCeEEEeeehhhhcCCHHHHHhhcCCCccCCCCeeEecCCCCCHHHHHHHHHHhccCCCCCCCHHHHHHHHHH
Q 003035 218 DSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLELLSF 297 (855)
Q Consensus 218 ~~V~f~v~~~~~~aHr~vLaa~S~~F~~mf~~~~~E~~~~~I~l~~~~is~~~~~~ll~y~YTg~l~~~~~~~~~~ll~~ 297 (855)
-||++++ |++|+|||+|||++||||++||+++|+|+.+ +|.+-..++++++|+.+|+|+|||++. ++.+||+++|.+
T Consensus 23 ~~~~~~~-~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~-it~~nV~~ll~a 99 (480)
T PHA02790 23 KTIIEAI-GGNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVY-IDSHNVVNLLRA 99 (480)
T ss_pred ceEEEEc-CcEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEE-EecccHHHHHHH
Confidence 3477665 5699999999999999999999999999965 566511389999999999999999999 999999999999
Q ss_pred hchhChHHHHHHHHHHHHhhcCChhhHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhcCC--hhHHh-----hhcCchhH
Q 003035 298 ANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYN--PKVMK-----IFCSSEAT 370 (855)
Q Consensus 298 A~~~~~~~Lk~~C~~~l~~~l~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~v~~~--~~f~~-----ll~~~~~~ 370 (855)
|++||++.+++.|++||.+.|+ ++||+.|+.+|+.|+++.|.+.|.+||.+||.+|.++ ++|.. +|++++.
T Consensus 100 A~~Lqi~~v~~~C~~fL~~~l~-~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~~~~lLssd~L- 177 (480)
T PHA02790 100 SILTSVEFIIYTCINFILRDFR-KEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLSMKLILESDEL- 177 (480)
T ss_pred HHHhChHHHHHHHHHHHHhhCC-cchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCCHHHhcccccC-
Confidence 9999999999999999999999 9999999999999999999999999999999999986 77765 4444443
Q ss_pred HHHHhhchhhHHHHHHHHHhhc
Q 003035 371 ERLANVGHASFLLYYFLSQVAM 392 (855)
Q Consensus 371 ~r~~~~~~~~f~l~~~La~~~~ 392 (855)
++..+..++...+.++..
T Consensus 178 ----~v~~Ee~V~eav~~Wl~~ 195 (480)
T PHA02790 178 ----NVPDEDYVVDFVIKWYMK 195 (480)
T ss_pred ----CCccHHHHHHHHHHHHHh
Confidence 356677777777777753
No 19
>PHA02713 hypothetical protein; Provisional
Probab=99.92 E-value=8.4e-25 Score=256.35 Aligned_cols=178 Identities=10% Similarity=0.142 Sum_probs=151.8
Q ss_pred cCCCCCCcEEEEEc-CeEEEeeehhhhcCCHHHHHhhcCCCccCC-CCeeEecCCCCCHHHHHHHHHHhccCCCCCCCHH
Q 003035 212 LSLEEDDSVTFCVR-DKEISFVRNKIASLSSPFKAMLYGGFVESK-RKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPG 289 (855)
Q Consensus 212 ~~~~~~~~V~f~v~-~~~~~aHr~vLaa~S~~F~~mf~~~~~E~~-~~~I~l~~~~is~~~~~~ll~y~YTg~l~~~~~~ 289 (855)
..++.+.||+|+|+ |++|+|||.|||++|+||++||+++|+|+. +++|+| +++++++|+.+|+|+|||+ ++.+
T Consensus 20 r~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l--~~v~~~~~~~ll~y~Yt~~---i~~~ 94 (557)
T PHA02713 20 LDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNL--QMFDKDAVKNIVQYLYNRH---ISSM 94 (557)
T ss_pred HhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEe--ccCCHHHHHHHHHHhcCCC---CCHH
Confidence 34455566999997 899999999999999999999999999875 789999 9999999999999999996 5799
Q ss_pred HHHHHHHHhchhChHHHHHHHHHHHHhhcCChhhHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhcCChhHHhhhcCchh
Q 003035 290 IVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKIFCSSEA 369 (855)
Q Consensus 290 ~~~~ll~~A~~~~~~~Lk~~C~~~l~~~l~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~v~~~~~f~~ll~~~~~ 369 (855)
++++||.+|++|+++.|++.|++||.+.++ ++||+.++.++..+.+..|.+.|.+||.+||.+|.++++|++|....-.
T Consensus 95 nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~-~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~~L~~~~l~ 173 (557)
T PHA02713 95 NVIDVLKCADYLLIDDLVTDCESYIKDYTN-HDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFKKTVFEILF 173 (557)
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHhhCC-ccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhhhCCHHHHH
Confidence 999999999999999999999999999999 9999999999999999899999999999999999999999864421111
Q ss_pred HH----HHHhhchhhHHHHHHHHHhhcccc
Q 003035 370 TE----RLANVGHASFLLYYFLSQVAMEKD 395 (855)
Q Consensus 370 ~~----r~~~~~~~~f~l~~~La~~~~~~~ 395 (855)
.. ....|..+..++..++.++.-+..
T Consensus 174 ~lL~~d~~l~v~~Ee~v~eav~~W~~~d~~ 203 (557)
T PHA02713 174 DIISTNDNVYLYREGYKVTILLKWLEYNYI 203 (557)
T ss_pred HHhccccccCCCcHHHHHHHHHHHHhcCHH
Confidence 00 111355666777777777765443
No 20
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.92 E-value=4.4e-25 Score=229.58 Aligned_cols=195 Identities=25% Similarity=0.315 Sum_probs=163.1
Q ss_pred hhcCCCCCCcEEEEEcCeEEEeeehhhhcCCHHHHHhhcCCCccCCCCeeEecCCCCCHHHHHHHHHHhccCCCCC--CC
Q 003035 210 VCLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDL--FC 287 (855)
Q Consensus 210 ~~~~~~~~~~V~f~v~~~~~~aHr~vLaa~S~~F~~mf~~~~~E~~~~~I~l~~~~is~~~~~~ll~y~YTg~l~~--~~ 287 (855)
+-+.+.+.+||+|+|++++|||||+|||+||.|||+|++|||.|+.+..|.+ ++...++|+++|+|||||++.. +.
T Consensus 37 ~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipL--q~t~~eAF~~lLrYiYtg~~~l~~~~ 114 (620)
T KOG4350|consen 37 ELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPL--QETNSEAFRALLRYIYTGKIDLAGVE 114 (620)
T ss_pred HHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhccccc--ccccHHHHHHHHHHHhhcceecccch
Confidence 4456677788999999999999999999999999999999999999999999 8899999999999999999985 67
Q ss_pred HHHHHHHHHHhchhChHHHHHHHHHHHHhhcCChhhHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhcCChhHHhhhcCc
Q 003035 288 PGIVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKIFCSS 367 (855)
Q Consensus 288 ~~~~~~ll~~A~~~~~~~Lk~~C~~~l~~~l~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~v~~~~~f~~ll~~~ 367 (855)
.+.+++.|.+|++|++..|.....++|++.+. .+|+|.+++.|..|+.+.|.+.|+.|+.+|..+++.+++|..|...+
T Consensus 115 ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~-~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~sFn~LSk~s 193 (620)
T KOG4350|consen 115 EDILLDYLSLAHRYGFIQLETAISEYLKEILK-NENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDPSFNRLSKDS 193 (620)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHc-ccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCcchhhhhHHH
Confidence 78899999999999999999999999999999 99999999999999999999999999999999999999999887544
Q ss_pred hhHHHHH--hhchhhHHHHHHHHHhhcccccchhhHHHHHHHHhhc
Q 003035 368 EATERLA--NVGHASFLLYYFLSQVAMEKDRVSNTTVMLLERLGEC 411 (855)
Q Consensus 368 ~~~~r~~--~~~~~~f~l~~~La~~~~~~~~~~~~a~~~le~~~~~ 411 (855)
-.+.-.+ ...|+- -.|||-..-.+.+ ++.+-+.+-+++++
T Consensus 194 L~e~l~RDsFfApE~---~IFlAv~~W~~~N-ske~~k~~~~~VRL 235 (620)
T KOG4350|consen 194 LKELLARDSFFAPEL---KIFLAVRSWHQNN-SKEASKVLLELVRL 235 (620)
T ss_pred HHHHHhhhcccchHH---HHHHHHHHHHhcC-chhhHHHHHHHHhh
Confidence 3332111 123332 3344433333444 45565666666665
No 21
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.91 E-value=4.4e-24 Score=249.26 Aligned_cols=185 Identities=24% Similarity=0.261 Sum_probs=160.3
Q ss_pred CCCCCCcEEEEEcCeEEEeeehhhhcCCHHHHHhhcCCCccCCCCeeEecCCCCCHHHHHHHHHHhccCCCCCCCHHHHH
Q 003035 213 SLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVL 292 (855)
Q Consensus 213 ~~~~~~~V~f~v~~~~~~aHr~vLaa~S~~F~~mf~~~~~E~~~~~I~l~~~~is~~~~~~ll~y~YTg~l~~~~~~~~~ 292 (855)
.....-||++.|++++|+|||.||||+||||++||+++++|+.+.+|+| .++++.+|..+++|+||+++. ++.++|+
T Consensus 32 ~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l--~~v~~~~l~~ll~y~Yt~~i~-i~~~nVq 108 (571)
T KOG4441|consen 32 EEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINL--EGVDPETLELLLDYAYTGKLE-ISEDNVQ 108 (571)
T ss_pred HhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEE--ecCCHHHHHHHHHHhhcceEE-echHhHH
Confidence 3445555999999999999999999999999999999999999999999 999999999999999999999 9999999
Q ss_pred HHHHHhchhChHHHHHHHHHHHHhhcCChhhHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhcCChhHHhh--------h
Q 003035 293 ELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKI--------F 364 (855)
Q Consensus 293 ~ll~~A~~~~~~~Lk~~C~~~l~~~l~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~v~~~~~f~~l--------l 364 (855)
+||.+|++||++.+++.|.+||.+.++ ++||+.|..+|+.|++.+|.+.+..|+.+||.++.++++|+.| +
T Consensus 109 ~ll~aA~~lQi~~v~~~C~~fL~~~l~-~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~L~~~~l~~ll 187 (571)
T KOG4441|consen 109 ELLEAASLLQIPEVVDACCEFLESQLD-PSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLLLSLEELIGLL 187 (571)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhCCCHHHHHhhc
Confidence 999999999999999999999999999 9999999999999999999999999999999999999998872 3
Q ss_pred cCchhHHHHHhhchhhHHHHHHHHHhhcccccchhhHHHHHH
Q 003035 365 CSSEATERLANVGHASFLLYYFLSQVAMEKDRVSNTTVMLLE 406 (855)
Q Consensus 365 ~~~~~~~r~~~~~~~~f~l~~~La~~~~~~~~~~~~a~~~le 406 (855)
.+++. .+..+..++...+.++.-+...|.....++++
T Consensus 188 ~~d~l-----~v~~E~~vf~a~~~Wv~~d~~~R~~~~~~ll~ 224 (571)
T KOG4441|consen 188 SSDDL-----NVDSEEEVFEAAMRWVKHDFEEREEHLPALLE 224 (571)
T ss_pred cccCC-----CcCCHHHHHHHHHHHHhcCHhhHHHHHHHHHH
Confidence 33332 35556666667777776554443334444433
No 22
>PHA03098 kelch-like protein; Provisional
Probab=99.91 E-value=7.3e-24 Score=249.83 Aligned_cols=169 Identities=14% Similarity=0.212 Sum_probs=148.5
Q ss_pred CCCCCCcEEEEE--cCeEEEeeehhhhcCCHHHHHhhcCCCccCCCCeeEecCCCCCHHHHHHHHHHhccCCCCCCCHHH
Q 003035 213 SLEEDDSVTFCV--RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGI 290 (855)
Q Consensus 213 ~~~~~~~V~f~v--~~~~~~aHr~vLaa~S~~F~~mf~~~~~E~~~~~I~l~~~~is~~~~~~ll~y~YTg~l~~~~~~~ 290 (855)
.++.+.||+++| +|++|+|||.||+++|+||++||+++|+ +.+|+| ++ ++++|+.+|+|+|||++. ++.++
T Consensus 5 ~~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l--~~-~~~~~~~~l~y~Ytg~~~-i~~~~ 77 (534)
T PHA03098 5 ELQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINL--NI-DYDSFNEVIKYIYTGKIN-ITSNN 77 (534)
T ss_pred ccCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEe--cC-CHHHHHHHHHHhcCCceE-EcHHH
Confidence 456667788887 9999999999999999999999999998 578999 88 999999999999999999 99999
Q ss_pred HHHHHHHhchhChHHHHHHHHHHHHhhcCChhhHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhcCChhHHhhhc-----
Q 003035 291 VLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKIFC----- 365 (855)
Q Consensus 291 ~~~ll~~A~~~~~~~Lk~~C~~~l~~~l~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~v~~~~~f~~ll~----- 365 (855)
+.+||.+|++|+++.|+..|+++|.+.++ .+||+.++.+|..|++..|.+.|.+||.+||.++.++++|.+|-.
T Consensus 78 ~~~ll~~A~~l~~~~l~~~C~~~l~~~l~-~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~~~l~~ 156 (534)
T PHA03098 78 VKDILSIANYLIIDFLINLCINYIIKIID-DNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSKNELIK 156 (534)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhCC-HhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCHHHHHH
Confidence 99999999999999999999999999999 999999999999999999999999999999999999988877642
Q ss_pred ---CchhHHHHHhhchhhHHHHHHHHHhhccc
Q 003035 366 ---SSEATERLANVGHASFLLYYFLSQVAMEK 394 (855)
Q Consensus 366 ---~~~~~~r~~~~~~~~f~l~~~La~~~~~~ 394 (855)
+++. .+..+..++...+.++-.+.
T Consensus 157 ll~~~~L-----~v~~E~~v~~av~~W~~~~~ 183 (534)
T PHA03098 157 ILSDDKL-----NVSSEDVVLEIIIKWLTSKK 183 (534)
T ss_pred HhcCCCc-----CcCCHHHHHHHHHHHHhcCh
Confidence 2221 34556666666666665433
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.90 E-value=9.2e-20 Score=219.42 Aligned_cols=442 Identities=12% Similarity=0.009 Sum_probs=278.2
Q ss_pred HHHHHhhcccccchhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhcchhh--hhhHHHHHH
Q 003035 385 YFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYS--LAGLARAKY 462 (855)
Q Consensus 385 ~~La~~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~~~a--~~~la~~~~ 462 (855)
+..+.+....|+ ++.|+..|+++++.+|+++. +...+..++...|++++|+.++++++...+... +..+|.++.
T Consensus 38 y~~aii~~r~Gd-~~~Al~~L~qaL~~~P~~~~---av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~ 113 (822)
T PRK14574 38 YDSLIIRARAGD-TAPVLDYLQEESKAGPLQSG---QVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYR 113 (822)
T ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHhhCccchh---hHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 334444445555 55666666666666655421 111444455555666666666666664433332 333355666
Q ss_pred HhCChHHHHHHHHhHHHcCCCchHHHHHHh----hccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHH
Q 003035 463 KVGQQYSAYKLINSIISEHKPTGWMYQERS----LYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEI 538 (855)
Q Consensus 463 ~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~----~~~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~ 538 (855)
.+|++++|++.++++++.+|++..++.... ..+..++|++.++++...+|++... ..++.++...++..+|++.+
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHH
Confidence 666666666666666666665544433221 1133345555555555555553332 33333333344444455555
Q ss_pred HHHHccCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhh--cccchhHHHHHHHHHhhcc-ChhhhHHHHh
Q 003035 539 DRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFH--GRVSGDHLVKLLNHHVRSW-SPADCWIKLY 614 (855)
Q Consensus 539 ~k~l~~~p~-~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~--~~~~~~~l~~ll~~~~~~~-~~a~~~~~~~ 614 (855)
+++++.+|+ .+.+..+..+....|-...|.+..+ ..|+..... ..+..+.....++-..... ...+
T Consensus 193 ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~----~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~------ 262 (822)
T PRK14574 193 SEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAK----ENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETE------ 262 (822)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHH----hCccccCHHHHHHHHHHHHHHHHhhcccccccchh------
Confidence 555555552 4444444445555555555543222 233221100 0111111111111100000 0000
Q ss_pred hhcccccccchHHHHHHHHH---cCCCChHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH
Q 003035 615 DRWSSVDDIGSLAVINQMLI---NDPGKSFLR----FRQSLLLLRLNCQKAAMRCLRLARNHS-SSEHERLVYEGWILYD 686 (855)
Q Consensus 615 ~~~~~~~d~~al~~~~~~l~---~~p~~~~~~----~~~a~~l~~~g~~~~A~~~l~~al~~~-p~~~~~~~~lg~~~~~ 686 (855)
+.... ..+++.+.+++. .+|.....+ +-.-.++...|++.++++.|+.+.... |-...+....|..|..
T Consensus 263 -r~~~~--d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~ 339 (822)
T PRK14574 263 -RFDIA--DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYID 339 (822)
T ss_pred -hHHHH--HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh
Confidence 00000 114566667776 445432222 233345778999999999999987654 3345678889999999
Q ss_pred CCCHHHHHHHHHHHHhccCC------h-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCC----------CCCCHH-
Q 003035 687 TGHREEALSRAEKSISIERT------F-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPS----------DGLRKG- 748 (855)
Q Consensus 687 ~g~~~eAl~~~~kal~~~p~------~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~----------~~~~p~- 748 (855)
+++.++|+..|++++.-.|. . .....|.++|.+.+++++|... +++..+.+. ...+|+
T Consensus 340 ~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~----l~~~~~~~p~~~~~~~~~~~~pn~d~ 415 (822)
T PRK14574 340 RRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQF----AVNYSEQTPYQVGVYGLPGKEPNDDW 415 (822)
T ss_pred cCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHH----HHHHHhcCCcEEeccCCCCCCCCccH
Confidence 99999999999999886531 2 4467889999999999999999 888875322 122333
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh---
Q 003035 749 -QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE--- 822 (855)
Q Consensus 749 -~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~--- 822 (855)
++...++.++.-.|++.+|++.+++.+... |+.+...+|.++..+|...+|.+.++.+..++|++..+...+|.
T Consensus 416 ~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al 495 (822)
T PRK14574 416 IEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAM 495 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHH
Confidence 888899999999999999999999999988 99999999999999999999999999999999999999999999
Q ss_pred -cCCHHHHHHHHHHHHhcCCCCcccch
Q 003035 823 -YSDREMAKNDLNMATQLDPLRTYPYR 848 (855)
Q Consensus 823 -~g~~eeA~~~~~kAl~l~P~~~~~~~ 848 (855)
.|++++|....+++++..|++...-+
T Consensus 496 ~l~e~~~A~~~~~~l~~~~Pe~~~~~~ 522 (822)
T PRK14574 496 ALQEWHQMELLTDDVISRSPEDIPSQE 522 (822)
T ss_pred hhhhHHHHHHHHHHHHhhCCCchhHHH
Confidence 99999999999999999999975544
No 24
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=4.5e-21 Score=205.69 Aligned_cols=341 Identities=16% Similarity=0.125 Sum_probs=257.3
Q ss_pred chHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003035 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLA 576 (855)
Q Consensus 498 ~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~-~~~l~lra~~y~~~gd~~~A~~~~~~aL~ 576 (855)
++||+.|..||++.|+-+.-|.+|+.+|...|++++-++...++|+++|+ ..++.-||..+.++|++.+|+.++...--
T Consensus 132 ~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci 211 (606)
T KOG0547|consen 132 DEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCI 211 (606)
T ss_pred HHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHH
Confidence 78888899999999988888899999999999999999999999999996 56788889999999999999888765422
Q ss_pred cC--Cch---hhhhccc---chhHHHHHHHHHhhccChhhhHHHHhhh-c-----------ccccc---cchHHHHH---
Q 003035 577 LE--SNY---MMFHGRV---SGDHLVKLLNHHVRSWSPADCWIKLYDR-W-----------SSVDD---IGSLAVIN--- 630 (855)
Q Consensus 577 ~~--P~~---~~~~~~~---~~~~l~~ll~~~~~~~~~a~~~~~~~~~-~-----------~~~~d---~~al~~~~--- 630 (855)
+. .+. ++....+ +...+...+.+....--...+.+.-|-. . +.-.| .+.+..++
T Consensus 212 ~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~ 291 (606)
T KOG0547|consen 212 LEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGL 291 (606)
T ss_pred hhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhC
Confidence 11 110 1111000 0000111111100000011122221110 0 00000 00011000
Q ss_pred ---------HHHH-------cCCCC---------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 003035 631 ---------QMLI-------NDPGK---------SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILY 685 (855)
Q Consensus 631 ---------~~l~-------~~p~~---------~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~ 685 (855)
.+-+ .-..+ +.++...|..++-.|++..|...|.++++++|.+...|..+|.+|.
T Consensus 292 ~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~ 371 (606)
T KOG0547|consen 292 EEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYA 371 (606)
T ss_pred chhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHh
Confidence 0000 00112 3455566777788999999999999999999999999999999999
Q ss_pred HCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcC
Q 003035 686 DTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECG 762 (855)
Q Consensus 686 ~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g 762 (855)
+.++.++-...|.+|..++|++ ..|+..|.++.-.+++++|+.. |++++ .++|. -++.+++....+++
T Consensus 372 d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD----F~Kai-----~L~pe~~~~~iQl~~a~Yr~~ 442 (606)
T KOG0547|consen 372 DENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD----FQKAI-----SLDPENAYAYIQLCCALYRQH 442 (606)
T ss_pred hhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH----HHHHh-----hcChhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999 9999999999999999999999 99999 99998 88889999999999
Q ss_pred CHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccC------CHHHHHHHhh-----cCCHHHH
Q 003035 763 KLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQY------SASAFEKRSE-----YSDREMA 829 (855)
Q Consensus 763 ~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~------~~~a~~~lg~-----~g~~eeA 829 (855)
++++++..|+.+++.- .++++.-.|.++..++++++|++.|.+++++.|. ++..+.+-|. .+++.+|
T Consensus 443 k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a 522 (606)
T KOG0547|consen 443 KIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQA 522 (606)
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHH
Confidence 9999999999999887 8899999999999999999999999999999999 7777777666 7899999
Q ss_pred HHHHHHHHhcCCCCcccc
Q 003035 830 KNDLNMATQLDPLRTYPY 847 (855)
Q Consensus 830 ~~~~~kAl~l~P~~~~~~ 847 (855)
+..+++|+++||.--.+|
T Consensus 523 ~~Ll~KA~e~Dpkce~A~ 540 (606)
T KOG0547|consen 523 ENLLRKAIELDPKCEQAY 540 (606)
T ss_pred HHHHHHHHccCchHHHHH
Confidence 999999999999865554
No 25
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=3.1e-21 Score=215.14 Aligned_cols=289 Identities=14% Similarity=0.163 Sum_probs=248.4
Q ss_pred HHHHhCCHHHHHHHHHHHHccCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhh
Q 003035 524 AKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVR 602 (855)
Q Consensus 524 ~~~~~~~~~~A~~~~~k~l~~~p~-~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~ 602 (855)
....+-+..+|+..|.+.-..-++ ...+...|..|+.+++|++|.+.|+.+-.++|-... .+ +..-..+
T Consensus 328 ~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~---~m--eiyST~L----- 397 (638)
T KOG1126|consen 328 RSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVK---GM--EIYSTTL----- 397 (638)
T ss_pred HHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc---ch--hHHHHHH-----
Confidence 344566778888888884343343 456667788999999999999999999888885321 00 0001111
Q ss_pred ccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 003035 603 SWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGW 682 (855)
Q Consensus 603 ~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~ 682 (855)
|-.-++...-...+.++..+|..+..|-..|.++.-+++++.|+++|++|++++|+...+|..+|.
T Consensus 398 --------------WHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGh 463 (638)
T KOG1126|consen 398 --------------WHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGH 463 (638)
T ss_pred --------------HHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCC
Confidence 111111111124467888999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHH
Q 003035 683 ILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYV 759 (855)
Q Consensus 683 ~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~ 759 (855)
-+..+..+|.|...|++|+..+|.+ .|||.+|.+|.++++++.|.-. |++|+ .++|. .....+|.++.
T Consensus 464 E~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~----fqkA~-----~INP~nsvi~~~~g~~~~ 534 (638)
T KOG1126|consen 464 ESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFH----FQKAV-----EINPSNSVILCHIGRIQH 534 (638)
T ss_pred hhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHH----HHhhh-----cCCccchhHHhhhhHHHH
Confidence 9999999999999999999999999 9999999999999999999999 99999 99998 88889999999
Q ss_pred HcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh----cCCHHHHHHHH
Q 003035 760 ECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDL 833 (855)
Q Consensus 760 ~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~----~g~~eeA~~~~ 833 (855)
++|+.|+|+..|++|+.++ ++...+..|.+++..+++++|+..+++..++.|++..++..+|. +|+.+.|+..|
T Consensus 535 ~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f 614 (638)
T KOG1126|consen 535 QLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHF 614 (638)
T ss_pred HhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhh
Confidence 9999999999999999999 99999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHhcCCCCcc
Q 003035 834 NMATQLDPLRTY 845 (855)
Q Consensus 834 ~kAl~l~P~~~~ 845 (855)
.-|+.+||.-..
T Consensus 615 ~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 615 SWALDLDPKGAQ 626 (638)
T ss_pred HHHhcCCCccch
Confidence 999999997543
No 26
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=3.3e-20 Score=209.97 Aligned_cols=279 Identities=11% Similarity=-0.042 Sum_probs=224.3
Q ss_pred chHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCCC-----HhHHHHHHHHHHHcCCHHHHHHHHH
Q 003035 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-----VDCLELRAWLFIAADDYESALRDTL 572 (855)
Q Consensus 498 ~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~-----~~~l~lra~~y~~~gd~~~A~~~~~ 572 (855)
++|+..+.++++.+|++..++..+|.++...|++++|+..+++++...+. ...+..+|.+|...|++++|+..++
T Consensus 52 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~ 131 (389)
T PRK11788 52 DKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFL 131 (389)
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34445555666666666667777888888888888888888888875332 1345566888888888888888888
Q ss_pred HHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 003035 573 ALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLR 652 (855)
Q Consensus 573 ~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~ 652 (855)
+++..+|. +..++..++.++..
T Consensus 132 ~~l~~~~~----------------------------------------------------------~~~~~~~la~~~~~ 153 (389)
T PRK11788 132 QLVDEGDF----------------------------------------------------------AEGALQQLLEIYQQ 153 (389)
T ss_pred HHHcCCcc----------------------------------------------------------hHHHHHHHHHHHHH
Confidence 77765443 33345566778889
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHH-----HHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchh
Q 003035 653 LNCQKAAMRCLRLARNHSSSEHE-----RLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPES 726 (855)
Q Consensus 653 ~g~~~~A~~~l~~al~~~p~~~~-----~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A 726 (855)
.|++++|++.++++++..|.+.. .+..+|.++..+|++++|+..|+++++.+|+. .+++.+|.++...|++++|
T Consensus 154 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 233 (389)
T PRK11788 154 EKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAA 233 (389)
T ss_pred hchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999998886532 45678999999999999999999999999998 9999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHcCCHHHHHHH
Q 003035 727 STYVIQLLEEALRCPSDGLRKG---QALNNLGSIYVECGKLDQAENCYINALDIK-HTRAHQGLARVYYLKNELKAAYDE 802 (855)
Q Consensus 727 ~~~~~~lle~al~~~~~~~~p~---~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~-~~~a~~~lg~~~~~~g~~~~A~~~ 802 (855)
+.. +++++ ...|. .++..++.+|...|++++|+..++++++.. +...+..+|.++...|++++|+..
T Consensus 234 ~~~----~~~~~-----~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~ 304 (389)
T PRK11788 234 IEA----LERVE-----EQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQAL 304 (389)
T ss_pred HHH----HHHHH-----HHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHH
Confidence 999 99999 66665 678899999999999999999999999988 656668999999999999999999
Q ss_pred HHHHHHHccCCHHHHHHHhh------cCCHHHHHHHHHHHH----hcCCCC
Q 003035 803 MTKLLEKAQYSASAFEKRSE------YSDREMAKNDLNMAT----QLDPLR 843 (855)
Q Consensus 803 ~~kal~~~p~~~~a~~~lg~------~g~~eeA~~~~~kAl----~l~P~~ 843 (855)
++++++..|++..+...++. .|+.++|+..+++.+ +.+|++
T Consensus 305 l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 305 LREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred HHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 99999999998876644443 347777777666555 455654
No 27
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.9e-19 Score=192.41 Aligned_cols=413 Identities=14% Similarity=0.052 Sum_probs=294.9
Q ss_pred HHHHHHhhcccccchhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhh--hhcHHH----------------HHHHHHHH
Q 003035 384 YYFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFE--REEYKD----------------ACYYFEAA 445 (855)
Q Consensus 384 ~~~La~~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~--~g~~~e----------------A~~~~~~A 445 (855)
-+.+++.+..... ++.|.-.|+..... -.++..+=+.|+. ++.-++ .....++-
T Consensus 81 ~y~laks~fd~kE-f~Raa~fL~~~~s~-------k~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L~~~ 152 (559)
T KOG1155|consen 81 IYLLAKSYFDCKE-FERAAFFLQNCKSK-------KSAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIELNKP 152 (559)
T ss_pred hhhhHhhhhhhHH-HHHHHHHHHhcchH-------HHHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHHhhH
Confidence 4678999988887 88888887765431 1122222222221 111111 11122222
Q ss_pred HHh------cchhhhhhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHhhccCcchHHHHHHHHHHhCC--CCchh
Q 003035 446 ADA------GHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDP--TLSFP 517 (855)
Q Consensus 446 l~~------~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~~~~~~~A~~~l~~a~~ldP--~~~~a 517 (855)
++. .+...++..|.++...|....|++.+..++...|-+=.+|...+.... .++++...+.--| .+-+.
T Consensus 153 le~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit---~~e~~~~l~~~l~~~~h~M~ 229 (559)
T KOG1155|consen 153 LESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELIT---DIEILSILVVGLPSDMHWMK 229 (559)
T ss_pred HHHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhc---hHHHHHHHHhcCcccchHHH
Confidence 222 123456777899999999999999999999999977666766665432 2333444443334 34445
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcc-CC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHH
Q 003035 518 YKYRAVAKMEEGQIRAAISEIDRIIVF-KL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVK 595 (855)
Q Consensus 518 ~~~~a~~~~~~~~~~~A~~~~~k~l~~-~p-~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ 595 (855)
-.+++.++....+.++++..+...+.. -| ++-.....|.+.....|+++|+..|+.+++.||-.... + +....
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~d---m--dlySN 304 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDD---M--DLYSN 304 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchh---H--HHHhH
Confidence 566788888888999999999888875 34 34455567899999999999999999999999853210 0 00000
Q ss_pred HHHHHhhccChhhhHHHHhhhcccccccchHH-HHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 003035 596 LLNHHVRSWSPADCWIKLYDRWSSVDDIGSLA-VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH 674 (855)
Q Consensus 596 ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~-~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~ 674 (855)
.+.-... -..+. ..+.+...|.-.+..---.|..|.-.++.+.|+.+|++|+++||+..
T Consensus 305 ~LYv~~~--------------------~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~ 364 (559)
T KOG1155|consen 305 VLYVKND--------------------KSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYL 364 (559)
T ss_pred HHHHHhh--------------------hHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchh
Confidence 0100000 00111 12233444444444444556677777889999999999999999999
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHH
Q 003035 675 ERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QAL 751 (855)
Q Consensus 675 ~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~ 751 (855)
.+|..+|.-|..+++...|+..|++|++++|.+ .+|+.+|.+|.-++-..=|+=+ |++|+ .+.|. ..|
T Consensus 365 ~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyY----fqkA~-----~~kPnDsRlw 435 (559)
T KOG1155|consen 365 SAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYY----FQKAL-----ELKPNDSRLW 435 (559)
T ss_pred HHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHH----HHHHH-----hcCCCchHHH
Confidence 999999999999999999999999999999988 9999999999999988888888 99999 88887 889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------HccCCHHHHHHHhh
Q 003035 752 NNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLE-------KAQYSASAFEKRSE 822 (855)
Q Consensus 752 ~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~-------~~p~~~~a~~~lg~ 822 (855)
..||.||.+.++.++|++||.+|+... +..++..+|.+|.+.++..+|..+|++.++ +.|+...+...|+.
T Consensus 436 ~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~ 515 (559)
T KOG1155|consen 436 VALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAE 515 (559)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Confidence 999999999999999999999999988 668999999999999999999999999988 34545556666776
Q ss_pred ----cCCHHHHHHHHHHHHhcCC
Q 003035 823 ----YSDREMAKNDLNMATQLDP 841 (855)
Q Consensus 823 ----~g~~eeA~~~~~kAl~l~P 841 (855)
.+++++|..+..+++.-+|
T Consensus 516 ~f~k~~~~~~As~Ya~~~~~~~~ 538 (559)
T KOG1155|consen 516 YFKKMKDFDEASYYATLVLKGET 538 (559)
T ss_pred HHHhhcchHHHHHHHHHHhcCCc
Confidence 7888888887777766543
No 28
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.88 E-value=1.9e-20 Score=192.74 Aligned_cols=328 Identities=18% Similarity=0.190 Sum_probs=262.1
Q ss_pred chHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCCCH-hHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003035 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV-DCLELRAWLFIAADDYESALRDTLALLA 576 (855)
Q Consensus 498 ~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~~-~~l~lra~~y~~~gd~~~A~~~~~~aL~ 576 (855)
..|+..|-.|++.||++..+++.||.+|+.+|+-..|+..+.++|.++|+. .+...||.++.++|.++.|+.+|+.+|.
T Consensus 55 sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~ 134 (504)
T KOG0624|consen 55 SDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQ 134 (504)
T ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHh
Confidence 456777888999999999999999999999999999999999999999985 5667899999999999999999999999
Q ss_pred cCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCH
Q 003035 577 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQ 656 (855)
Q Consensus 577 ~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~ 656 (855)
.+|++.... .+.....++.++ |... .++-....+.|-..+++.+.++++..|-++.++...+.+|...|+.
T Consensus 135 ~~~s~~~~~---eaqskl~~~~e~---~~l~---~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~ 205 (504)
T KOG0624|consen 135 HEPSNGLVL---EAQSKLALIQEH---WVLV---QQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEP 205 (504)
T ss_pred cCCCcchhH---HHHHHHHhHHHH---HHHH---HHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcH
Confidence 999753211 111111111111 1110 0111122344445567889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh---HHHH-HH---------HHHHHHCCCC
Q 003035 657 KAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF---EAFF-LK---------AYILADTNLD 723 (855)
Q Consensus 657 ~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~---~a~~-~l---------g~~~~~~g~~ 723 (855)
..|+..++.+-++..++.+.+|.+..+++..|+.+.++...++.++++|+. ..++ .+ +......+.|
T Consensus 206 k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~ 285 (504)
T KOG0624|consen 206 KKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHW 285 (504)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 999999999999999999999999999999999999999999999999998 2222 11 2334567788
Q ss_pred chhHHHHHHHHHHHhcCCCCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCC
Q 003035 724 PESSTYVIQLLEEALRCPSDGLRKG------QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNE 795 (855)
Q Consensus 724 ~~A~~~~~~lle~al~~~~~~~~p~------~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~ 795 (855)
.++++. .++.+ +.+|. ..+-.+..|+..-|++-+|++...++|+++ +..++-..+.+|.....
T Consensus 286 t~cle~----ge~vl-----k~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~ 356 (504)
T KOG0624|consen 286 TECLEA----GEKVL-----KNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEM 356 (504)
T ss_pred HHHHHH----HHHHH-----hcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHH
Confidence 888888 99999 55555 455557788889999999999999999999 79999999999999999
Q ss_pred HHHHHHHHHHHHHHccCCHHH-------------------HHHHhh--cCCHHHHHHHHHHH-HhcCCCC
Q 003035 796 LKAAYDEMTKLLEKAQYSASA-------------------FEKRSE--YSDREMAKNDLNMA-TQLDPLR 843 (855)
Q Consensus 796 ~~~A~~~~~kal~~~p~~~~a-------------------~~~lg~--~g~~eeA~~~~~kA-l~l~P~~ 843 (855)
|+.|+..|++|.+.+++|..+ |-.||. .....+-.+.|+|. .+-.|++
T Consensus 357 YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDN 426 (504)
T KOG0624|consen 357 YDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDN 426 (504)
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCcc
Confidence 999999999999999998654 333444 44555666666654 4446776
No 29
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=6e-20 Score=200.88 Aligned_cols=419 Identities=15% Similarity=0.106 Sum_probs=301.9
Q ss_pred HHHHhhcccccchhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHH-----------H-h-----
Q 003035 386 FLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAA-----------D-A----- 448 (855)
Q Consensus 386 ~La~~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al-----------~-~----- 448 (855)
.++|++...++ +..|..++..- +. ..+........+.++.+.+++++|......+- . .
T Consensus 54 ~~aq~l~~~~~-y~ra~~lit~~-~l---e~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~ 128 (611)
T KOG1173|consen 54 WLAQVLYLGRQ-YERAAHLITTY-KL---EKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLEL 128 (611)
T ss_pred HHHHHHHhhhH-HHHHHHHHHHh-hh---hhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceecc
Confidence 46666665555 66666554432 11 11223455667778888888888877765220 0 0
Q ss_pred ---c-------chhhhhhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHh--hccCcchHHHHHHHHHHhCCC-Cc
Q 003035 449 ---G-------HIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERS--LYNLGREKIVDLNYASELDPT-LS 515 (855)
Q Consensus 449 ---~-------~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~--~~~~~~~A~~~l~~a~~ldP~-~~ 515 (855)
+ .....+..|.+|..+.++.+|.+.|.+++..++.+-.+..... +.-..++-+..++ .+|-. ..
T Consensus 129 n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~---~l~~a~~~ 205 (611)
T KOG1173|consen 129 NSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLE---SLDLAMLT 205 (611)
T ss_pred CcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHh---cccHHhhh
Confidence 0 0112344567777888888888888888887777655443221 1111111111111 11100 00
Q ss_pred hhHHHHHHHHHHhC----CHHHHHHHH--HHHHccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccc
Q 003035 516 FPYKYRAVAKMEEG----QIRAAISEI--DRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS 589 (855)
Q Consensus 516 ~a~~~~a~~~~~~~----~~~~A~~~~--~k~l~~~p~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~ 589 (855)
.-...+-..+.+.. .-+.++... ...++.+.+++.+.-+|..+...+++.+..+..+.++..+|-+.....
T Consensus 206 ~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~--- 282 (611)
T KOG1173|consen 206 KEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLP--- 282 (611)
T ss_pred hhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHH---
Confidence 00111111111110 001111110 233344456677778899999999999999999999999998753221
Q ss_pred hhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003035 590 GDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH 669 (855)
Q Consensus 590 ~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~ 669 (855)
-++. .+ ++. .++..-.-+-+++++..|.++..||..|..|+-.|++.+|.++|-++..+
T Consensus 283 -~~ia-~l----------------~el---~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l 341 (611)
T KOG1173|consen 283 -LHIA-CL----------------YEL---GKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL 341 (611)
T ss_pred -HHHH-HH----------------HHh---cccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc
Confidence 0111 01 100 01111234457889999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH
Q 003035 670 SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG 748 (855)
Q Consensus 670 ~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~ 748 (855)
+|..+.+|...|.++.-.|.+|+|+..|..|-++.|.. ...+.+|.-|..++++.-|.+. |.+|+ .+.|.
T Consensus 342 D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~F----f~~A~-----ai~P~ 412 (611)
T KOG1173|consen 342 DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKF----FKQAL-----AIAPS 412 (611)
T ss_pred CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHH----HHHHH-----hcCCC
Confidence 99999999999999999999999999999999999999 8999999999999999999999 99999 88888
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHH
Q 003035 749 --QALNNLGSIYVECGKLDQAENCYINALDIK---------HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAF 817 (855)
Q Consensus 749 --~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~---------~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~ 817 (855)
-.++.+|.+....+.+.+|..+|+++++.- ....+.|+|.++.+++.+++|+..|++++.+.|.++++|
T Consensus 413 Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~ 492 (611)
T KOG1173|consen 413 DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTH 492 (611)
T ss_pred cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHH
Confidence 788899999999999999999999999422 234588999999999999999999999999999999999
Q ss_pred HHHhh----cCCHHHHHHHHHHHHhcCCCCcc
Q 003035 818 EKRSE----YSDREMAKNDLNMATQLDPLRTY 845 (855)
Q Consensus 818 ~~lg~----~g~~eeA~~~~~kAl~l~P~~~~ 845 (855)
..+|. +|+++.|+..|.|||.++|++..
T Consensus 493 asig~iy~llgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 493 ASIGYIYHLLGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence 99999 99999999999999999999853
No 30
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=1.4e-19 Score=204.93 Aligned_cols=300 Identities=13% Similarity=0.048 Sum_probs=241.7
Q ss_pred HHHHhhhhHhhhhcHHHHHHHHHHHHHhcch--hhhhhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHhhccCcc
Q 003035 421 ALHQLGCVMFEREEYKDACYYFEAAADAGHI--YSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGR 498 (855)
Q Consensus 421 a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~~--~a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~~~~~~ 498 (855)
..+.+|..+...|++++|+..|+++++.++. .++..+|.++..+|++++|...+++++...+.....
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~----------- 105 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ----------- 105 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH-----------
Confidence 3456788888889999999999998877543 467888888888999888888877776532111100
Q ss_pred hHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003035 499 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLAL 577 (855)
Q Consensus 499 ~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p-~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~ 577 (855)
....+..+|.+|...|++++|+..|++++..+| +...+..++.++...|++++|++.+++++..
T Consensus 106 ---------------~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 170 (389)
T PRK11788 106 ---------------RLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL 170 (389)
T ss_pred ---------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh
Confidence 012456789999999999999999999999877 4567778899999999999999999999887
Q ss_pred CCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHH
Q 003035 578 ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQK 657 (855)
Q Consensus 578 ~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~ 657 (855)
+|+.... .....+..+|..+.+.|+++
T Consensus 171 ~~~~~~~-----------------------------------------------------~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 171 GGDSLRV-----------------------------------------------------EIAHFYCELAQQALARGDLD 197 (389)
T ss_pred cCCcchH-----------------------------------------------------HHHHHHHHHHHHHHhCCCHH
Confidence 6653100 00112345788889999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh--HHHHHHHHHHHHCCCCchhHHHHHHHHH
Q 003035 658 AAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF--EAFFLKAYILADTNLDPESSTYVIQLLE 735 (855)
Q Consensus 658 ~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~--~a~~~lg~~~~~~g~~~~A~~~~~~lle 735 (855)
+|+..|+++++.+|+...+++.+|.++...|++++|+..++++++.+|.+ .++..++.+|...|++++|+.. ++
T Consensus 198 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~----l~ 273 (389)
T PRK11788 198 AARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEF----LR 273 (389)
T ss_pred HHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHH----HH
Confidence 99999999999999999999999999999999999999999999999987 7788999999999999999999 99
Q ss_pred HHhcCCCCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-cHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH
Q 003035 736 EALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDIK-HTRAHQGLARVYYL---KNELKAAYDEMTKLLE 808 (855)
Q Consensus 736 ~al~~~~~~~~p~-~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~-~~~a~~~lg~~~~~---~g~~~~A~~~~~kal~ 808 (855)
+++ ...|+ ..+..+|.++...|++++|+..++++++.. +...+..+...+.. .|+..+|+..+++.++
T Consensus 274 ~~~-----~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 274 RAL-----EEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHH-----HhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 999 66676 566899999999999999999999999998 44444433333332 4578888887777665
No 31
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=3.8e-19 Score=194.21 Aligned_cols=341 Identities=16% Similarity=0.141 Sum_probs=233.9
Q ss_pred chHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003035 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLA 576 (855)
Q Consensus 498 ~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~-~~~l~lra~~y~~~gd~~~A~~~~~~aL~ 576 (855)
+.|+..|..||.++|++...|.+|...|...|+|++|+.+-.+.++++|+ +..+.-+|..+..+|+|++|+..|.+-|+
T Consensus 19 ~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~ 98 (539)
T KOG0548|consen 19 ETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLE 98 (539)
T ss_pred HHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhh
Confidence 55666666666777777777777777777777777777777777777776 34555566677777777777777777777
Q ss_pred cCCchhhhhcccchh---------------------------------HHHHHHHHHhhccChh------hhHHHHhhhc
Q 003035 577 LESNYMMFHGRVSGD---------------------------------HLVKLLNHHVRSWSPA------DCWIKLYDRW 617 (855)
Q Consensus 577 ~~P~~~~~~~~~~~~---------------------------------~l~~ll~~~~~~~~~a------~~~~~~~~~~ 617 (855)
.+|++..+...+... .+..++.........- ...++.....
T Consensus 99 ~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l 178 (539)
T KOG0548|consen 99 KDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQL 178 (539)
T ss_pred cCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHH
Confidence 777664432222111 1111111111111000 0000000000
Q ss_pred ccccccchHH---HHHHHHHcCCC---------------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 003035 618 SSVDDIGSLA---VINQMLINDPG---------------------KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE 673 (855)
Q Consensus 618 ~~~~d~~al~---~~~~~l~~~p~---------------------~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~ 673 (855)
..++. .... .....-...|. ...-.-.+|.......+++.|++.|.++++++ .+
T Consensus 179 ~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~ 256 (539)
T KOG0548|consen 179 KGVDE-LLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TD 256 (539)
T ss_pred hcCcc-ccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hh
Confidence 00000 0000 00000000110 11223466777888999999999999999999 88
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh--------HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCC--
Q 003035 674 HERLVYEGWILYDTGHREEALSRAEKSISIERTF--------EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSD-- 743 (855)
Q Consensus 674 ~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~--------~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~-- 743 (855)
...+.+.+.+|+..|.+.+.+....++++..... .+...+|.+|...++++.++.+ |++++.....
T Consensus 257 it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~----~~kaLte~Rt~~ 332 (539)
T KOG0548|consen 257 ITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKY----YQKALTEHRTPD 332 (539)
T ss_pred hHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH----HHHHhhhhcCHH
Confidence 8889999999999999999999999988876553 3344567788888999999999 8888732111
Q ss_pred -------------------CCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHH
Q 003035 744 -------------------GLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAY 800 (855)
Q Consensus 744 -------------------~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~ 800 (855)
..+|. .--..-|..++..|+|..|+..|.+||..+ |+..|.|+|.+|.++|++..|+
T Consensus 333 ~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL 412 (539)
T KOG0548|consen 333 LLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEAL 412 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHH
Confidence 01222 223345999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHccCCHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCCc
Q 003035 801 DEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLDPLRT 844 (855)
Q Consensus 801 ~~~~kal~~~p~~~~a~~~lg~----~g~~eeA~~~~~kAl~l~P~~~ 844 (855)
...+++++++|++..+|..-|. +.++++|.+.|.+++++||.+.
T Consensus 413 ~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~ 460 (539)
T KOG0548|consen 413 KDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNA 460 (539)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhH
Confidence 9999999999999999999888 8999999999999999999864
No 32
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=2.1e-17 Score=199.22 Aligned_cols=397 Identities=13% Similarity=0.010 Sum_probs=296.8
Q ss_pred HHHHhhcccccchhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhcc--hhhhhhHHHHHHH
Q 003035 386 FLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYK 463 (855)
Q Consensus 386 ~La~~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~--~~a~~~la~~~~~ 463 (855)
-++.++...++ .+.|+..+++++ +|++.. ..++..+|.+|..+|+|++|++.|+++++..| ..++.+++.+|..
T Consensus 73 dll~l~~~~G~-~~~A~~~~eka~--~p~n~~-~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~ 148 (822)
T PRK14574 73 DWLQIAGWAGR-DQEVIDVYERYQ--SSMNIS-SRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQAD 148 (822)
T ss_pred HHHHHHHHcCC-cHHHHHHHHHhc--cCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Confidence 45555666677 889999999999 333321 23445568899999999999999999998754 4567889999999
Q ss_pred hCChHHHHHHHHhHHHcCCCchHHHHHHhhc---cCcchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHH
Q 003035 464 VGQQYSAYKLINSIISEHKPTGWMYQERSLY---NLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDR 540 (855)
Q Consensus 464 ~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~~---~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k 540 (855)
.|+..+|++.++++.+.+|.+.+.......+ ....+|++.++++++++|++...+..+..++...|-...|++...+
T Consensus 149 ~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 149 AGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred cCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 9999999999999999999865542222222 3445799999999999999999999999999999999999877665
Q ss_pred HHc-cCCCHhHHH---HHHHHHHHcC------------CHHHHHHHHHHHHhcCCchh---hhhcccchhHHHHHHHHHh
Q 003035 541 IIV-FKLSVDCLE---LRAWLFIAAD------------DYESALRDTLALLALESNYM---MFHGRVSGDHLVKLLNHHV 601 (855)
Q Consensus 541 ~l~-~~p~~~~l~---lra~~y~~~g------------d~~~A~~~~~~aL~~~P~~~---~~~~~~~~~~l~~ll~~~~ 601 (855)
--. +.+ .+... ..+.-..+.. -.+.|+..+++++...|..+ ..+.+...+.+..+....
T Consensus 229 ~p~~f~~-~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~- 306 (822)
T PRK14574 229 NPNLVSA-EHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRH- 306 (822)
T ss_pred CccccCH-HHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhh-
Confidence 322 111 11111 1111111111 24567888888887433322 222222333333221110
Q ss_pred hccChhhhHHHHhhhcccccccchHHHHHHHHHcCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------Cc
Q 003035 602 RSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG--KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS------SE 673 (855)
Q Consensus 602 ~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~--~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p------~~ 673 (855)
.+. ..+.. .+.|...+. -..+....|..|+.++++++|+..|+.+++.+| .+
T Consensus 307 -r~~------------------~vi~~-y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~ 366 (822)
T PRK14574 307 -QTA------------------DLIKE-YEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDD 366 (822)
T ss_pred -hHH------------------HHHHH-HHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcc
Confidence 000 01122 233333222 345666778899999999999999999988663 23
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC---------------Ch-HHHHHHHHHHHHCCCCchhHHHHHHHHHHH
Q 003035 674 HERLVYEGWILYDTGHREEALSRAEKSISIER---------------TF-EAFFLKAYILADTNLDPESSTYVIQLLEEA 737 (855)
Q Consensus 674 ~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p---------------~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~a 737 (855)
.+....|-..+.+++++++|..++++..+..| +. ++...++..+...|+..+|.+. +++.
T Consensus 367 ~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~----le~l 442 (822)
T PRK14574 367 LLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKK----LEDL 442 (822)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH----HHHH
Confidence 44456788899999999999999999988433 33 8888999999999999999999 9999
Q ss_pred hcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCC
Q 003035 738 LRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS 813 (855)
Q Consensus 738 l~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~ 813 (855)
+ ...|+ .++..+|.++...|.+.+|.+.++.++.++ +..+..++|.++..+|++.+|.....++++..|++
T Consensus 443 ~-----~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~ 517 (822)
T PRK14574 443 S-----STAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPED 517 (822)
T ss_pred H-----HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCc
Confidence 9 88888 899999999999999999999999999988 88999999999999999999999999999999999
Q ss_pred HHHH
Q 003035 814 ASAF 817 (855)
Q Consensus 814 ~~a~ 817 (855)
+..-
T Consensus 518 ~~~~ 521 (822)
T PRK14574 518 IPSQ 521 (822)
T ss_pred hhHH
Confidence 8664
No 33
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=3.4e-16 Score=167.72 Aligned_cols=369 Identities=15% Similarity=0.071 Sum_probs=263.4
Q ss_pred HHHHHhhhhHhhhhcHHHHHHHHHHHHHhcc--hhhhhhHHHHHHHhCChHHHHHHHHhHHHcCCC-chHHHHHH-----
Q 003035 420 LALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLINSIISEHKP-TGWMYQER----- 491 (855)
Q Consensus 420 ~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~--~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~-~~~~y~~~----- 491 (855)
..++..|.++.+.|....|+..|..++..-| =.++..|..+- .-++....++..-|. ..||-..-
T Consensus 165 fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~li-------t~~e~~~~l~~~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 165 FLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELI-------TDIEILSILVVGLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhh-------chHHHHHHHHhcCcccchHHHHHHHHHHH
Confidence 3566778888888888888888888776433 23555554432 223333444433332 44442110
Q ss_pred hhccCcchHHHHHHHHHHh-CCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCC-CHhHHHHHHHHHHHcCCHHHHHH
Q 003035 492 SLYNLGREKIVDLNYASEL-DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALR 569 (855)
Q Consensus 492 ~~~~~~~~A~~~l~~a~~l-dP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p-~~~~l~lra~~y~~~gd~~~A~~ 569 (855)
-.....++++..++..... .|++.+.-...|.+...+.++++|+..|+.+.+.+| ..+-..+...+...+++-.+---
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~ 317 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSY 317 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHH
Confidence 0112336778888888777 888888888899999999999999999999999888 33332222223333333222111
Q ss_pred HHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHH
Q 003035 570 DTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLL 649 (855)
Q Consensus 570 ~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~ 649 (855)
.-+.+..+|.--+....- ....|..-+ +.-.+...++.+++.+|....+|..+|.-
T Consensus 318 LA~~v~~idKyR~ETCCi----------------------IaNYYSlr~--eHEKAv~YFkRALkLNp~~~~aWTLmGHE 373 (559)
T KOG1155|consen 318 LAQNVSNIDKYRPETCCI----------------------IANYYSLRS--EHEKAVMYFKRALKLNPKYLSAWTLMGHE 373 (559)
T ss_pred HHHHHHHhccCCccceee----------------------ehhHHHHHH--hHHHHHHHHHHHHhcCcchhHHHHHhhHH
Confidence 112222222111100000 011111100 11124667899999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHH
Q 003035 650 LLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESST 728 (855)
Q Consensus 650 l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~ 728 (855)
+++.++...|+..|+.|++++|.+..+|+.+|+.|..++.+.-|+-+|++|+++.|.+ ..|..+|.+|.+.++.++|++
T Consensus 374 yvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiK 453 (559)
T KOG1155|consen 374 YVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIK 453 (559)
T ss_pred HHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc---------cHHHHHHHHHHHHHcCCHHHH
Q 003035 729 YVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK---------HTRAHQGLARVYYLKNELKAA 799 (855)
Q Consensus 729 ~~~~lle~al~~~~~~~~p~~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~---------~~~a~~~lg~~~~~~g~~~~A 799 (855)
. |.+++.+... .+.++..||.+|.+++++.+|..+|++-++.. -..+..-|+.-..+.+++++|
T Consensus 454 C----ykrai~~~dt---e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~A 526 (559)
T KOG1155|consen 454 C----YKRAILLGDT---EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEA 526 (559)
T ss_pred H----HHHHHhcccc---chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHH
Confidence 9 9999943322 12899999999999999999999999999832 234566699999999999999
Q ss_pred HHHHHHHHHHccCCHHHHHHHhhcCCHHHHHHHHHHHHhc
Q 003035 800 YDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQL 839 (855)
Q Consensus 800 ~~~~~kal~~~p~~~~a~~~lg~~g~~eeA~~~~~kAl~l 839 (855)
..+..+++.-++. .++|+..++....+
T Consensus 527 s~Ya~~~~~~~~e-------------~eeak~LlReir~~ 553 (559)
T KOG1155|consen 527 SYYATLVLKGETE-------------CEEAKALLREIRKI 553 (559)
T ss_pred HHHHHHHhcCCch-------------HHHHHHHHHHHHHh
Confidence 9988887765433 46677777665544
No 34
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=1.4e-18 Score=194.15 Aligned_cols=264 Identities=12% Similarity=0.020 Sum_probs=204.2
Q ss_pred hhHHHHHHHHHHhCCHHHHHHHHHHHHccCCC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchh
Q 003035 516 FPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS----VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGD 591 (855)
Q Consensus 516 ~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~----~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~ 591 (855)
+....+|..|++.++|++|..+|+.+=+..|- ++.+.- .+|.-+.+++. --.-+.++..+|+.+..+.-++..
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST--~LWHLq~~v~L-s~Laq~Li~~~~~sPesWca~GNc 430 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYST--TLWHLQDEVAL-SYLAQDLIDTDPNSPESWCALGNC 430 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHH--HHHHHHhhHHH-HHHHHHHHhhCCCCcHHHHHhcch
Confidence 33445577777778888888887777776662 333321 11111111111 112234445555544322211110
Q ss_pred HHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 003035 592 HLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS 671 (855)
Q Consensus 592 ~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p 671 (855)
.-. +.+...++..+++++..||..+.+|..+|.-+.....++.|+.+|++|+..+|
T Consensus 431 fSL------------------------Qkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 431 FSL------------------------QKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred hhh------------------------hhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 000 11222356677777778888888888888888889999999999999999999
Q ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--
Q 003035 672 SEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG-- 748 (855)
Q Consensus 672 ~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~-- 748 (855)
.+..+||.+|.+|.++++++.|.-+|++|++++|.+ .....+|.++.+.|+.++|+.. |++|+ .++|.
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~----~~~A~-----~ld~kn~ 557 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQL----YEKAI-----HLDPKNP 557 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHH----HHHHH-----hcCCCCc
Confidence 999999999999999999999999999999999999 8899999999999999999999 99999 88887
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHH
Q 003035 749 QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSAS 815 (855)
Q Consensus 749 ~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~ 815 (855)
-..+..|.++...+++++|+..+++..++. +..+++.+|.+|.+.|+.+.|+..|.=|..++|.-..
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 778889999999999999999999998888 8899999999999999999999999999999997554
No 35
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.3e-16 Score=174.90 Aligned_cols=280 Identities=16% Similarity=0.102 Sum_probs=229.1
Q ss_pred chhHHHHHHHHHHhCCHHHHHHHHHHHHccCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHH
Q 003035 515 SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHL 593 (855)
Q Consensus 515 ~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p-~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l 593 (855)
+....-+|..++...++.+-.+..+.+++++| .+.++-++-.++..+|+..+=...=.++...+|+.+....-
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~a------ 317 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFA------ 317 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhh------
Confidence 34455667788888899999999999988887 56776665557777777776666666777777775432211
Q ss_pred HHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 003035 594 VKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE 673 (855)
Q Consensus 594 ~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~ 673 (855)
++...-..+.+..| -..+.++...||..+.+|...|..+...|..++|+..|..|-++.|+.
T Consensus 318 Vg~YYl~i~k~seA------------------Rry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~ 379 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEA------------------RRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC 379 (611)
T ss_pred HHHHHHHhcCcHHH------------------HHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC
Confidence 12222222333332 235667778889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCH--H--
Q 003035 674 HERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK--G-- 748 (855)
Q Consensus 674 ~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p--~-- 748 (855)
+....++|.-|..++++.-|.+.|.+|+.+.|++ -.+..+|.+.+..+.|.+|..+ |+.++....+.... .
T Consensus 380 hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~----f~~~l~~ik~~~~e~~~w~ 455 (611)
T KOG1173|consen 380 HLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKY----FQKALEVIKSVLNEKIFWE 455 (611)
T ss_pred cchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHH----HHHHHHHhhhccccccchh
Confidence 9999999999999999999999999999999999 9999999999999999999999 99988322211111 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh
Q 003035 749 QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE 822 (855)
Q Consensus 749 ~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~ 822 (855)
..++|||.+|.+++++++|+.+|+++|.+. ++.++-.+|.+|..+|+++.|++.|.|++.++|+|..+-..|+.
T Consensus 456 p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 456 PTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 679999999999999999999999999999 99999999999999999999999999999999999777666655
No 36
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.3e-16 Score=174.48 Aligned_cols=388 Identities=13% Similarity=0.058 Sum_probs=231.3
Q ss_pred HHhhcccccchhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhcchh--hhhhHHHHHHHhC
Q 003035 388 SQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIY--SLAGLARAKYKVG 465 (855)
Q Consensus 388 a~~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~~~--a~~~la~~~~~~g 465 (855)
+..++..++ +++|+.++.+++.++|.+ ...|.+....|...|+|.+|.+.-.+.++++|.+ ++..+|-.....|
T Consensus 9 gnaa~s~~d-~~~ai~~~t~ai~l~p~n---hvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 9 GNAAFSSGD-FETAIRLFTEAIMLSPTN---HVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHhhccccc-HHHHHHHHHHHHccCCCc---cchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence 445677788 999999999999988874 5567788888999999999999999998888875 5888888899999
Q ss_pred ChHHHHHHHHhHHHcCCCchHHHHHHhhc----------------------------cCcchHHHHHHHHHHhCCCCchh
Q 003035 466 QQYSAYKLINSIISEHKPTGWMYQERSLY----------------------------NLGREKIVDLNYASELDPTLSFP 517 (855)
Q Consensus 466 ~~~~A~~~l~~~i~~~p~~~~~y~~~~~~----------------------------~~~~~A~~~l~~a~~ldP~~~~a 517 (855)
++++|+..|.+.++.+|+|.-.+..+... ...+.+.......+..+|++...
T Consensus 85 ~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred cHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 99999999999999999875443322110 00122223333344444444333
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHH----------H----ccCCC-------H---h------------HHHHHHHHHHHc
Q 003035 518 YKYRAVAKMEEGQIRAAISEIDRI----------I----VFKLS-------V---D------------CLELRAWLFIAA 561 (855)
Q Consensus 518 ~~~~a~~~~~~~~~~~A~~~~~k~----------l----~~~p~-------~---~------------~l~lra~~y~~~ 561 (855)
|.+- .+...|...+..+ . ..+|. + + .....|....+.
T Consensus 165 ~l~d-------~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykk 237 (539)
T KOG0548|consen 165 YLND-------PRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKK 237 (539)
T ss_pred cccc-------HHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHh
Confidence 3220 0111111111000 0 01110 0 0 011236666666
Q ss_pred CCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHH-HHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCCh
Q 003035 562 DDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLN-HHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKS 640 (855)
Q Consensus 562 gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~-~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~ 640 (855)
.++..|++.|..++.++ ....+..+.++.++..... ...+....+. +.-+....-.++| .
T Consensus 238 k~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~------------E~gre~rad~klI------a 298 (539)
T KOG0548|consen 238 KDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAV------------EVGRELRADYKLI------A 298 (539)
T ss_pred hhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHH------------HHhHHHHHHHHHH------H
Confidence 77777777777777776 4433332222222111000 0000000000 0000000001111 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHH
Q 003035 641 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILAD 719 (855)
Q Consensus 641 ~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~ 719 (855)
....++|..+...++++.|+.+|.+++...-+ ..+.......++++...+...-++|.- .--...|..++.
T Consensus 299 k~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk 370 (539)
T KOG0548|consen 299 KALARLGNAYTKREDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFK 370 (539)
T ss_pred HHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHh
Confidence 12333555666667777777777776664433 445556666677777766666667766 555556777777
Q ss_pred CCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCC
Q 003035 720 TNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNE 795 (855)
Q Consensus 720 ~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~ 795 (855)
.|+|..|+.. |.+|| ..+|+ .+|.|.|.+|..+|.+..|++..+++++++ ...+|..-|.++..+.+
T Consensus 371 ~gdy~~Av~~----YteAI-----kr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ 441 (539)
T KOG0548|consen 371 KGDYPEAVKH----YTEAI-----KRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKE 441 (539)
T ss_pred ccCHHHHHHH----HHHHH-----hcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 7777777777 77777 66666 677777777777777777777777777777 66677777777777777
Q ss_pred HHHHHHHHHHHHHHccCCHHHHHHHhh
Q 003035 796 LKAAYDEMTKLLEKAQYSASAFEKRSE 822 (855)
Q Consensus 796 ~~~A~~~~~kal~~~p~~~~a~~~lg~ 822 (855)
|++|.+.|+++++.+|++..+...+..
T Consensus 442 ydkAleay~eale~dp~~~e~~~~~~r 468 (539)
T KOG0548|consen 442 YDKALEAYQEALELDPSNAEAIDGYRR 468 (539)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 777777777777777777666555554
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=4.5e-17 Score=172.63 Aligned_cols=423 Identities=14% Similarity=0.119 Sum_probs=246.5
Q ss_pred HHHHHHHHHhhcccccchhhHHHHHHHHhhc--hhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhcc-------h
Q 003035 381 FLLYYFLSQVAMEKDRVSNTTVMLLERLGEC--STERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH-------I 451 (855)
Q Consensus 381 f~l~~~La~~~~~~~~~~~~a~~~le~~~~~--~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~-------~ 451 (855)
|...+-|++-|-..++ ..+|+..++-.++. .|+. .....++|++++++.+|.+|+++|+-|+..-| .
T Consensus 201 fsvl~nlaqqy~~ndm-~~ealntyeiivknkmf~na---g~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~ri 276 (840)
T KOG2003|consen 201 FSVLFNLAQQYEANDM-TAEALNTYEIIVKNKMFPNA---GILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRI 276 (840)
T ss_pred HHHHHHHHHHhhhhHH-HHHHhhhhhhhhcccccCCC---ceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHH
Confidence 4445567777777777 88888888877763 2332 33446789999999999999999999887532 2
Q ss_pred hhhhhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHhh-c--cCcchHHHHHHHHHHh--------------CCCC
Q 003035 452 YSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSL-Y--NLGREKIVDLNYASEL--------------DPTL 514 (855)
Q Consensus 452 ~a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~-~--~~~~~A~~~l~~a~~l--------------dP~~ 514 (855)
..+..+|......|+++.|+..+.-.++..|+-...|....- + ++.++-.+.+.+.+.+ ||+.
T Consensus 277 kil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~ 356 (840)
T KOG2003|consen 277 KILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD 356 (840)
T ss_pred HHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch
Confidence 345667777788899999999999999998886554433321 2 2223444456666543 1221
Q ss_pred chhHHHHHH-----HHHHhCC---HHHHHHHHHHHHc--cCCCH-----hHHH----------------HHHHHHHHcCC
Q 003035 515 SFPYKYRAV-----AKMEEGQ---IRAAISEIDRIIV--FKLSV-----DCLE----------------LRAWLFIAADD 563 (855)
Q Consensus 515 ~~a~~~~a~-----~~~~~~~---~~~A~~~~~k~l~--~~p~~-----~~l~----------------lra~~y~~~gd 563 (855)
. ..+.+. --++..+ .++|+..-.++|. +.|+. .|+. .+|--+.+.||
T Consensus 357 ~--ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d 434 (840)
T KOG2003|consen 357 N--LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGD 434 (840)
T ss_pred H--HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccC
Confidence 1 111111 1122222 2334443444443 33431 1221 24667888999
Q ss_pred HHHHHHHHHHHHhcCCchhh-hhcccchhHHHHHHHHHhhccChhhhHHHH------hhh----------cccccccchH
Q 003035 564 YESALRDTLALLALESNYMM-FHGRVSGDHLVKLLNHHVRSWSPADCWIKL------YDR----------WSSVDDIGSL 626 (855)
Q Consensus 564 ~~~A~~~~~~aL~~~P~~~~-~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~------~~~----------~~~~~d~~al 626 (855)
++.|++.++-.-..+..... +..++.+....+-- ..+..+..+..+ |.- +-..|-..++
T Consensus 435 ~~~aieilkv~~~kdnk~~saaa~nl~~l~flqgg----k~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~ 510 (840)
T KOG2003|consen 435 IEGAIEILKVFEKKDNKTASAAANNLCALRFLQGG----KDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAA 510 (840)
T ss_pred HHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcc----cchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHH
Confidence 99999987755554433211 11111111110000 000011000000 000 0011111234
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC
Q 003035 627 AVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERT 706 (855)
Q Consensus 627 ~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~ 706 (855)
..+..++..+..-..++|..|+.+-.+|+.++|+.+|-+...+--++.++++.++.+|..+.+..+|++.+-++..+-|+
T Consensus 511 ~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~ 590 (840)
T KOG2003|consen 511 EFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPN 590 (840)
T ss_pred HHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCC
Confidence 44555666555556666666666666677777777666666666666666677777777777777777777777666666
Q ss_pred h-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHH
Q 003035 707 F-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTR 781 (855)
Q Consensus 707 ~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~ 781 (855)
+ ..+..+|..|-+.|+...|.++ +-... ...|. +..-.||..|.+..-+++|+.+|++|--+. ...
T Consensus 591 dp~ilskl~dlydqegdksqafq~----~ydsy-----ryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k 661 (840)
T KOG2003|consen 591 DPAILSKLADLYDQEGDKSQAFQC----HYDSY-----RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK 661 (840)
T ss_pred CHHHHHHHHHHhhcccchhhhhhh----hhhcc-----cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH
Confidence 6 6666667777666666666666 55555 55554 555566777777777777777777776666 333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh
Q 003035 782 AHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE 822 (855)
Q Consensus 782 a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~ 822 (855)
.....+.++.+.|+|.+|.+.|+..-.+.|.+.+.+..|-.
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvr 702 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVR 702 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 44455667777777777777777777777777776666555
No 38
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.78 E-value=4.4e-17 Score=168.14 Aligned_cols=302 Identities=14% Similarity=0.117 Sum_probs=244.1
Q ss_pred CCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccc
Q 003035 511 DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS 589 (855)
Q Consensus 511 dP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~-~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~ 589 (855)
+|....-++.+|.-++..|++..|+..|-.+++.+|+ ..+++-||.+|+++|+-..|+.++.++|++.|+++.+....+
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence 3444555677899999999999999999999999995 578899999999999999999999999999999753321111
Q ss_pred hhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHH---H------------HHHHHHHHHcC
Q 003035 590 GDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFL---R------------FRQSLLLLRLN 654 (855)
Q Consensus 590 ~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~---~------------~~~a~~l~~~g 654 (855)
.+.-..++.+. +.+-+.+++..+|.+... + ..+..-+...|
T Consensus 114 ------~vllK~Gele~------------------A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~G 169 (504)
T KOG0624|consen 114 ------VVLLKQGELEQ------------------AEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSG 169 (504)
T ss_pred ------hhhhhcccHHH------------------HHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCC
Confidence 11111122222 334567777777754321 1 12223355689
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHH
Q 003035 655 CQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQL 733 (855)
Q Consensus 655 ~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~l 733 (855)
+...|+++....+++.|-++..+..++.+|...|+...||...+.+-++..++ +.+|.++..++..|+.+.++..
T Consensus 170 D~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~---- 245 (504)
T KOG0624|consen 170 DCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKE---- 245 (504)
T ss_pred chhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHH----
Confidence 99999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHhcCCCCCCCHH-----HHHHHH---------HHHHHHcCCHHHHHHHHHHHHhcc-c-H----HHHHHHHHHHHHc
Q 003035 734 LEEALRCPSDGLRKG-----QALNNL---------GSIYVECGKLDQAENCYINALDIK-H-T----RAHQGLARVYYLK 793 (855)
Q Consensus 734 le~al~~~~~~~~p~-----~a~~~L---------G~~y~~~g~~~~A~~~~~kAL~~~-~-~----~a~~~lg~~~~~~ 793 (855)
.++.+ .++|+ ..|-.+ +.-....++|.++++.++++++.+ . + ...-.+..++..-
T Consensus 246 iRECL-----KldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d 320 (504)
T KOG0624|consen 246 IRECL-----KLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYRED 320 (504)
T ss_pred HHHHH-----ccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccccc
Confidence 89999 78887 222222 223356788999999999999887 2 2 3444567778888
Q ss_pred CCHHHHHHHHHHHHHHccCCHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCCcc
Q 003035 794 NELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLDPLRTY 845 (855)
Q Consensus 794 g~~~~A~~~~~kal~~~p~~~~a~~~lg~----~g~~eeA~~~~~kAl~l~P~~~~ 845 (855)
|++-+|+...+++++.+|+++.++-.+++ ...|+.|+.+|++|++.+|++.-
T Consensus 321 ~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 321 EQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence 99999999999999999999999999999 56899999999999999998753
No 39
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.77 E-value=2.1e-17 Score=179.61 Aligned_cols=215 Identities=14% Similarity=0.099 Sum_probs=174.4
Q ss_pred hHHHHHHHHHcCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 003035 625 SLAVINQMLINDP----GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKS 700 (855)
Q Consensus 625 al~~~~~~l~~~p----~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~ka 700 (855)
+++.+.+++...| ..+..++.+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..|+++
T Consensus 45 ~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~A 124 (296)
T PRK11189 45 ILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSV 124 (296)
T ss_pred HHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3556667775433 336789999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcc
Q 003035 701 ISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNL-GSIYVECGKLDQAENCYINALDIK 778 (855)
Q Consensus 701 l~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~~a~~~L-G~~y~~~g~~~~A~~~~~kAL~~~ 778 (855)
++++|++ .++.++|.++...|++++|++. +++++ ..+|++.+..+ ..+....+++++|++.|++++...
T Consensus 125 l~l~P~~~~a~~~lg~~l~~~g~~~eA~~~----~~~al-----~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 125 LELDPTYNYAYLNRGIALYYGGRYELAQDD----LLAFY-----QDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHH----HHHHH-----HhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 9999999 9999999999999999999999 99999 77777332222 234456789999999998877654
Q ss_pred cHHHHHHHHHHHHHcCCHHHH--HHH----HHHHHHHccCCHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCCcccch
Q 003035 779 HTRAHQGLARVYYLKNELKAA--YDE----MTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLDPLRTYPYR 848 (855)
Q Consensus 779 ~~~a~~~lg~~~~~~g~~~~A--~~~----~~kal~~~p~~~~a~~~lg~----~g~~eeA~~~~~kAl~l~P~~~~~~~ 848 (855)
++..+. .+.++...|+...+ .+. ++..+++.|+.+++|+++|. .|++++|+.+|++|++++|.+-.-+|
T Consensus 196 ~~~~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~ 274 (296)
T PRK11189 196 DKEQWG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHR 274 (296)
T ss_pred CccccH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 322222 45666666765433 322 23334778888999999999 99999999999999999987665666
Q ss_pred h
Q 003035 849 Y 849 (855)
Q Consensus 849 ~ 849 (855)
|
T Consensus 275 ~ 275 (296)
T PRK11189 275 Y 275 (296)
T ss_pred H
Confidence 5
No 40
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.76 E-value=6.2e-16 Score=177.71 Aligned_cols=329 Identities=16% Similarity=0.093 Sum_probs=244.7
Q ss_pred HHHHhhhhHhhhhcHHHHHHHHHHHHHhcc--hhhhhhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHhhccCcc
Q 003035 421 ALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGR 498 (855)
Q Consensus 421 a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~--~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~~~~~~ 498 (855)
.+...|+..+.+|++++|++.+.++|+.+| ..++..||.+|-.+|+..+++..
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~------------------------- 195 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNF------------------------- 195 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHH-------------------------
Confidence 345577888999999999999999998764 56899999999999987666542
Q ss_pred hHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003035 499 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLAL 577 (855)
Q Consensus 499 ~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p-~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~ 577 (855)
.-.|..++|++..-|...+....++|++.+|+-+|.++|+.+| +......++.+|.++|++..|.+-+.+++..
T Consensus 196 -----~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~ 270 (895)
T KOG2076|consen 196 -----WLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQL 270 (895)
T ss_pred -----HHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhh
Confidence 3345667888888888899999999999999999999999998 4677788899999999999999999999999
Q ss_pred CCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHH--cCCCChHHHHHHHHHHHHcCC
Q 003035 578 ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLI--NDPGKSFLRFRQSLLLLRLNC 655 (855)
Q Consensus 578 ~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~--~~p~~~~~~~~~a~~l~~~g~ 655 (855)
+|.. .......++......+... .+...+++.+...+. .+-....-+...+.+++...+
T Consensus 271 ~p~~-------d~er~~d~i~~~~~~~~~~------------~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q 331 (895)
T KOG2076|consen 271 DPPV-------DIERIEDLIRRVAHYFITH------------NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQ 331 (895)
T ss_pred CCch-------hHHHHHHHHHHHHHHHHHh------------hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHH
Confidence 9821 1111111111111100000 000112233333333 222223344566777888888
Q ss_pred HHHHHHHHHHHHh--cC---------------------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC
Q 003035 656 QKAAMRCLRLARN--HS---------------------------SSEHERLVYEGWILYDTGHREEALSRAEKSISIERT 706 (855)
Q Consensus 656 ~~~A~~~l~~al~--~~---------------------------p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~ 706 (855)
++.|......-.. .. ++-+-....++.+..+.++..+++-.+..--...|.
T Consensus 332 ~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~ 411 (895)
T KOG2076|consen 332 SDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVS 411 (895)
T ss_pred HHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChh
Confidence 8888877766554 11 111222556677777777788888777655555576
Q ss_pred h--HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--c
Q 003035 707 F--EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG---QALNNLGSIYVECGKLDQAENCYINALDIK--H 779 (855)
Q Consensus 707 ~--~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~---~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~ 779 (855)
. +.++.++.+|.+.|++.+|+.. |-.+. ...+. ..|..+|.||..+|.+++|+++|+++|... +
T Consensus 412 d~~dL~~d~a~al~~~~~~~~Al~~----l~~i~-----~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~ 482 (895)
T KOG2076|consen 412 DDVDLYLDLADALTNIGKYKEALRL----LSPIT-----NREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDN 482 (895)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHH----HHHHh-----cCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCc
Confidence 6 8999999999999999999999 88888 43333 789999999999999999999999999998 8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003035 780 TRAHQGLARVYYLKNELKAAYDEMTKLL 807 (855)
Q Consensus 780 ~~a~~~lg~~~~~~g~~~~A~~~~~kal 807 (855)
..+...|+.++..+|+.++|++.++..+
T Consensus 483 ~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 483 LDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 8999999999999999999999988876
No 41
>PRK12370 invasion protein regulator; Provisional
Probab=99.76 E-value=2.1e-16 Score=186.60 Aligned_cols=241 Identities=12% Similarity=0.042 Sum_probs=137.5
Q ss_pred chHHHHHHHHHHhCCCCchhHHHHHHHHHHh---------CCHHHHHHHHHHHHccCC-CHhHHHHHHHHHHHcCCHHHH
Q 003035 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEE---------GQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESA 567 (855)
Q Consensus 498 ~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~---------~~~~~A~~~~~k~l~~~p-~~~~l~lra~~y~~~gd~~~A 567 (855)
++|+..+++|+++||++..+|..+|.++... +++++|+..++++++.+| ++.++..+|.++...|++++|
T Consensus 278 ~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A 357 (553)
T PRK12370 278 QQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVG 357 (553)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Confidence 5778888888888888888888777766533 235566666666666665 345555555566666666666
Q ss_pred HHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHH
Q 003035 568 LRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQS 647 (855)
Q Consensus 568 ~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a 647 (855)
+..|++++.++|++ +.+++.+|
T Consensus 358 ~~~~~~Al~l~P~~----------------------------------------------------------~~a~~~lg 379 (553)
T PRK12370 358 SLLFKQANLLSPIS----------------------------------------------------------ADIKYYYG 379 (553)
T ss_pred HHHHHHHHHhCCCC----------------------------------------------------------HHHHHHHH
Confidence 55555555444432 22334455
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc-CCh-HHHHHHHHHHHHCCCCch
Q 003035 648 LLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE-RTF-EAFFLKAYILADTNLDPE 725 (855)
Q Consensus 648 ~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~-p~~-~a~~~lg~~~~~~g~~~~ 725 (855)
.++...|++++|+..++++++++|.++..++.++.+++..|++++|+..+++++... |++ .++..+|.+|...|++++
T Consensus 380 ~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~e 459 (553)
T PRK12370 380 WNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHEL 459 (553)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHH
Confidence 555566666666666666666666655555555555555666666666666666553 344 555566666666666666
Q ss_pred hHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHH
Q 003035 726 SSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYD 801 (855)
Q Consensus 726 A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~ 801 (855)
|... ++++. ...|. .+++.++..|...| ++|...+++.++.. .+.-......++..+|+.+.|..
T Consensus 460 A~~~----~~~~~-----~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 528 (553)
T PRK12370 460 ARKL----TKEIS-----TQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKM 528 (553)
T ss_pred HHHH----HHHhh-----hccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHH
Confidence 6666 55555 33333 45555555555555 25555555544433 11112225555555555555554
Q ss_pred HHHHHHH
Q 003035 802 EMTKLLE 808 (855)
Q Consensus 802 ~~~kal~ 808 (855)
+ +++.+
T Consensus 529 ~-~~~~~ 534 (553)
T PRK12370 529 W-NKFKN 534 (553)
T ss_pred H-HHhhc
Confidence 4 44443
No 42
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.75 E-value=4.1e-15 Score=168.43 Aligned_cols=412 Identities=17% Similarity=0.136 Sum_probs=263.2
Q ss_pred HHHHHHHHHhhcccccchhhHHHHHHHHhhchh--hHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHh--cchhhhhh
Q 003035 381 FLLYYFLSQVAMEKDRVSNTTVMLLERLGECST--ERWQRMLALHQLGCVMFEREEYKDACYYFEAAADA--GHIYSLAG 456 (855)
Q Consensus 381 f~l~~~La~~~~~~~~~~~~a~~~le~~~~~~~--~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~--~~~~a~~~ 456 (855)
+.+...+..++...+. ..+++.++-.+++... .-.+.+..|-.|.-.....|+|..+.++|++++.. +....++.
T Consensus 284 ~~Lllli~es~i~Re~-~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~ 362 (799)
T KOG4162|consen 284 VILLLLIEESLIPREN-IEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQ 362 (799)
T ss_pred HHHHHHHHhhcccccc-HHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHH
Confidence 3334444555555555 4455544333332110 11123345667777778888888888888888743 22233444
Q ss_pred HHHHHHHhCChHHHHHHHHhHHHcC--CCchH-----------------------------------------------H
Q 003035 457 LARAKYKVGQQYSAYKLINSIISEH--KPTGW-----------------------------------------------M 487 (855)
Q Consensus 457 la~~~~~~g~~~~A~~~l~~~i~~~--p~~~~-----------------------------------------------~ 487 (855)
++..|...|....|+..++...... |++.. .
T Consensus 363 ~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~ 442 (799)
T KOG4162|consen 363 LALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIA 442 (799)
T ss_pred HHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Confidence 4444444454444444444444333 22110 1
Q ss_pred HHHHhhc--------cCcchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCC--CHhHHHHHHHH
Q 003035 488 YQERSLY--------NLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL--SVDCLELRAWL 557 (855)
Q Consensus 488 y~~~~~~--------~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p--~~~~l~lra~~ 557 (855)
|..+..- .-..++++.++++++.||+|+.+-++++.-|..+++.+.|+....++++.++ ++.++++.|.+
T Consensus 443 y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALv 522 (799)
T KOG4162|consen 443 YGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALV 522 (799)
T ss_pred HHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 1111000 0024788889999999999999999999999999999999999999999866 57888999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCchhhh-hcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcC
Q 003035 558 FIAADDYESALRDTLALLALESNYMMF-HGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIND 636 (855)
Q Consensus 558 y~~~gd~~~A~~~~~~aL~~~P~~~~~-~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~ 636 (855)
.-..+++.+|+..+..++..-|+|... .+++.... . ++.. -+++..+.+.+...
T Consensus 523 lSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~-------~---~~~~---------------e~~l~t~~~~L~~w 577 (799)
T KOG4162|consen 523 LSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL-------T---FNDR---------------EEALDTCIHKLALW 577 (799)
T ss_pred HhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh-------h---cccH---------------HHHHHHHHHHHHHH
Confidence 999999999999999999888875321 11111100 0 0100 01222233333221
Q ss_pred CCChH---------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC---HHHHHHHHHHHHh-c
Q 003035 637 PGKSF---------LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGH---REEALSRAEKSIS-I 703 (855)
Q Consensus 637 p~~~~---------~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~---~~eAl~~~~kal~-~ 703 (855)
..... ..-..+-+.+.+++..+|+...+++.. .+. .++. ++.. +.+... -
T Consensus 578 e~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~-------------l~a-~~~~~~~se~~---Lp~s~~~~ 640 (799)
T KOG4162|consen 578 EAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS-------------LVA-SQLKSAGSELK---LPSSTVLP 640 (799)
T ss_pred HhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH-------------HHH-hhhhhcccccc---cCcccccC
Confidence 11111 011111111112222222222222221 111 1111 1111 111000 1
Q ss_pred cCCh------HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003035 704 ERTF------EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINAL 775 (855)
Q Consensus 704 ~p~~------~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL 775 (855)
.|+. ..|...|..+...++.++|... +.++- .+.|- ..|+..|.++...|+..+|.++|..|+
T Consensus 641 ~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~C----L~Ea~-----~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 641 GPDSLWYLLQKLWLLAADLFLLSGNDDEARSC----LLEAS-----KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred CCCchHHHHHHHHHHHHHHHHhcCCchHHHHH----HHHHH-----hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 1221 5677888899999999999988 88888 77777 899999999999999999999999999
Q ss_pred hcc--cHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHccCCHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCCc
Q 003035 776 DIK--HTRAHQGLARVYYLKNELKAAYD--EMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLDPLRT 844 (855)
Q Consensus 776 ~~~--~~~a~~~lg~~~~~~g~~~~A~~--~~~kal~~~p~~~~a~~~lg~----~g~~eeA~~~~~kAl~l~P~~~ 844 (855)
.++ ++.+...+|.++...|+..-|.. .+..+++++|.|+++|+.+|. .|+.++|.++|.-|+++++.++
T Consensus 712 ~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 712 ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 999 99999999999999998877777 999999999999999999999 9999999999999999987765
No 43
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=2.1e-15 Score=160.04 Aligned_cols=396 Identities=12% Similarity=0.092 Sum_probs=274.7
Q ss_pred HHHhhcccccchhhHHHHHHHHhhchhhHH--HHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhcch-hhhhhHHHHHHH
Q 003035 387 LSQVAMEKDRVSNTTVMLLERLGECSTERW--QRMLALHQLGCVMFEREEYKDACYYFEAAADAGHI-YSLAGLARAKYK 463 (855)
Q Consensus 387 La~~~~~~~~~~~~a~~~le~~~~~~~~~~--~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~~-~a~~~la~~~~~ 463 (855)
++.++..... +.+|++++..+++.-|+-. .....+.++|..+.+.|+|+.|+..|+..++..|. .+-+.|..+++.
T Consensus 243 igni~~kkr~-fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~ 321 (840)
T KOG2003|consen 243 IGNIHFKKRE-FSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFA 321 (840)
T ss_pred ecceeeehhh-HHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhhee
Confidence 4455666666 8899999999998766542 24456789999999999999999999999887543 466788888999
Q ss_pred hCChHHHHHHHHhHHHc--------------CCCchHH--------HH--HHhhccCcchHHHHHHHHHH--hCCCCc--
Q 003035 464 VGQQYSAYKLINSIISE--------------HKPTGWM--------YQ--ERSLYNLGREKIVDLNYASE--LDPTLS-- 515 (855)
Q Consensus 464 ~g~~~~A~~~l~~~i~~--------------~p~~~~~--------y~--~~~~~~~~~~A~~~l~~a~~--ldP~~~-- 515 (855)
-|+.++..+.+.++|.. +|+..-. +. ++..-.+.++++..--+.+. +.|+..
T Consensus 322 i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g 401 (840)
T KOG2003|consen 322 IGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAG 401 (840)
T ss_pred cCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcc
Confidence 99999999999888744 1211100 00 00000112333333323221 233321
Q ss_pred ------------------hhHHHHHHHHHHhCCHHHHHHHHHHHHccCCC--HhHHHHHHHHH-H-HcCCHHHHHHHHHH
Q 003035 516 ------------------FPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS--VDCLELRAWLF-I-AADDYESALRDTLA 573 (855)
Q Consensus 516 ------------------~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~--~~~l~lra~~y-~-~~gd~~~A~~~~~~ 573 (855)
..-.+.|.-|+.+|+++.|++.++-.-+.+.. ..+...+..++ . .-+++..|..+-..
T Consensus 402 ~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~ 481 (840)
T KOG2003|consen 402 CDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADI 481 (840)
T ss_pred cHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHH
Confidence 12345677889999999999887544333221 12222222222 2 34567788888777
Q ss_pred HHhcCCchhhhhccc--------chhHHHHHHHHHhhccChhhhHHHHhhhcccccc----cchHHHHHHHHHcCCCChH
Q 003035 574 LLALESNYMMFHGRV--------SGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDD----IGSLAVINQMLINDPGKSF 641 (855)
Q Consensus 574 aL~~~P~~~~~~~~~--------~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d----~~al~~~~~~l~~~p~~~~ 641 (855)
++.++.-+..+..+. ..+.....+.+... +.+.|-..+|.-.-.... .+++..+.++-..--++..
T Consensus 482 aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~--ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~e 559 (840)
T KOG2003|consen 482 ALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN--NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAE 559 (840)
T ss_pred HhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc--CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHH
Confidence 877766544322111 11111222222221 223344444432211111 1245666665555567888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHC
Q 003035 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADT 720 (855)
Q Consensus 642 ~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~ 720 (855)
+++.++.+|-.+.+..+|++.+.++..+-|++|.++..+|.+|-+.|+-.+|.+++-...+..|.+ +..--+|.-|...
T Consensus 560 vl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidt 639 (840)
T KOG2003|consen 560 VLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDT 639 (840)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999 8888899999999
Q ss_pred CCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcC
Q 003035 721 NLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKN 794 (855)
Q Consensus 721 g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g 794 (855)
.=+++|+.+ |++|- -++|+ .-..+++.|+.+.|+|++|.+.|+..-..- +...+--|-++...+|
T Consensus 640 qf~ekai~y----~ekaa-----liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 640 QFSEKAINY----FEKAA-----LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHH----HHHHH-----hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 999999999 99998 88898 555678999999999999999998876655 7777777777777766
No 44
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.75 E-value=3.1e-16 Score=162.27 Aligned_cols=197 Identities=18% Similarity=0.195 Sum_probs=180.7
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHH
Q 003035 638 GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYI 716 (855)
Q Consensus 638 ~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~ 716 (855)
..+..++.+|..+...|++++|+..++++++.+|++..++..+|.++..+|++++|+..++++++..|++ .+++.+|.+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 3467888999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHH
Q 003035 717 LADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYL 792 (855)
Q Consensus 717 ~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~ 792 (855)
+...|++++|+.. ++++++.+. .+. ..+.++|.++...|++++|...|+++++.. ++.++..+|.++..
T Consensus 109 ~~~~g~~~~A~~~----~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 181 (234)
T TIGR02521 109 LCQQGKYEQAMQQ----FEQAIEDPL---YPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYL 181 (234)
T ss_pred HHHcccHHHHHHH----HHHHHhccc---cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH
Confidence 9999999999999 999993221 122 788899999999999999999999999988 78899999999999
Q ss_pred cCCHHHHHHHHHHHHHHccCCHHHHHHHhh----cCCHHHHHHHHHHHHhcCC
Q 003035 793 KNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLDP 841 (855)
Q Consensus 793 ~g~~~~A~~~~~kal~~~p~~~~a~~~lg~----~g~~eeA~~~~~kAl~l~P 841 (855)
.|++++|+..++++++..|+++..+..++. .|+.++|..+.+.+....|
T Consensus 182 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 182 RGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 999999999999999999999988887777 8999999999888877654
No 45
>PRK12370 invasion protein regulator; Provisional
Probab=99.75 E-value=4.6e-16 Score=183.71 Aligned_cols=254 Identities=15% Similarity=0.021 Sum_probs=192.3
Q ss_pred CCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChH
Q 003035 562 DDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSF 641 (855)
Q Consensus 562 gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~ 641 (855)
+++++|++.++++++++|++...+..++..+... ...+.... ..+...++..+.++++.+|+++.
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~---~~~g~~~~------------~~~~~~A~~~~~~Al~ldP~~~~ 339 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSM---AQMGIFDK------------QNAMIKAKEHAIKATELDHNNPQ 339 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH---HHcCCccc------------chHHHHHHHHHHHHHhcCCCCHH
Confidence 3456777777777777777765443222111100 00000000 01112356677889999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHC
Q 003035 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADT 720 (855)
Q Consensus 642 ~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~ 720 (855)
++..+|.++...|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..++++++++|.+ .+++.++.++...
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~ 419 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYH 419 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 6777778788889
Q ss_pred CCCchhHHHHHHHHHHHhcCCCCCCC-HH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCC
Q 003035 721 NLDPESSTYVIQLLEEALRCPSDGLR-KG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNE 795 (855)
Q Consensus 721 g~~~~A~~~~~~lle~al~~~~~~~~-p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~ 795 (855)
|++++|+.. +++++ ... |+ .++.++|.++...|++++|...+++.+... +..+...++.+|..+|+
T Consensus 420 g~~eeA~~~----~~~~l-----~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 420 TGIDDAIRL----GDELR-----SQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE 490 (553)
T ss_pred cCHHHHHHH----HHHHH-----HhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH
Confidence 999999999 99998 543 44 678999999999999999999999988777 67788889989888885
Q ss_pred HHHHHHHHHHHHH---HccCCHHHHHHHhh-cCCHHHHHHHHHHHHhcCCC
Q 003035 796 LKAAYDEMTKLLE---KAQYSASAFEKRSE-YSDREMAKNDLNMATQLDPL 842 (855)
Q Consensus 796 ~~~A~~~~~kal~---~~p~~~~a~~~lg~-~g~~eeA~~~~~kAl~l~P~ 842 (855)
+|...+++.++ ..+.++.....+-. .|+.+.|.-+ +++.+.+..
T Consensus 491 --~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~ 538 (553)
T PRK12370 491 --RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDNI 538 (553)
T ss_pred --HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccchH
Confidence 56665555544 44555444222222 8888888777 666665443
No 46
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.74 E-value=4.8e-15 Score=180.49 Aligned_cols=400 Identities=10% Similarity=0.000 Sum_probs=286.7
Q ss_pred hhhHHHHHHHHhhc--hhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhcchhhhhhHHHHHHHhCChHHHHHHHH
Q 003035 398 SNTTVMLLERLGEC--STERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLIN 475 (855)
Q Consensus 398 ~~~a~~~le~~~~~--~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~A~~~l~ 475 (855)
.+.+.+++..+.+. .|+ ...+..+...|.+.|++++|.+.|++..+. +..++..+...|...|+.++|++.++
T Consensus 139 ~~~a~~l~~~m~~~g~~~~----~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~-~~~t~n~li~~~~~~g~~~~A~~lf~ 213 (697)
T PLN03081 139 IRCVKAVYWHVESSGFEPD----QYMMNRVLLMHVKCGMLIDARRLFDEMPER-NLASWGTIIGGLVDAGNYREAFALFR 213 (697)
T ss_pred HHHHHHHHHHHHHhCCCcc----hHHHHHHHHHHhcCCCHHHHHHHHhcCCCC-CeeeHHHHHHHHHHCcCHHHHHHHHH
Confidence 55666666666552 333 235666777777888888888887776442 33456667777777788888887777
Q ss_pred hHHHcCCC-chHHHHHH----hhccCcchHHHHHHHHHHhC-CCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCCCHh
Q 003035 476 SIISEHKP-TGWMYQER----SLYNLGREKIVDLNYASELD-PTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVD 549 (855)
Q Consensus 476 ~~i~~~p~-~~~~y~~~----~~~~~~~~A~~~l~~a~~ld-P~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~~~ 549 (855)
+..+..+. +...|... ...+....+.+....+.+.. ..+...+..+...|.+.|++++|...|+++. .++..
T Consensus 214 ~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--~~~~v 291 (697)
T PLN03081 214 EMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP--EKTTV 291 (697)
T ss_pred HHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC--CCChh
Confidence 77654322 21222111 11122233444434343332 2345667778888999999999999998874 34566
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHH
Q 003035 550 CLELRAWLFIAADDYESALRDTLALLAL--ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLA 627 (855)
Q Consensus 550 ~l~lra~~y~~~gd~~~A~~~~~~aL~~--~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~ 627 (855)
.+..+...|.+.|++++|++.|++.... .|+...+. .++... .+.+..+ .+..
T Consensus 292 t~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~---------~ll~a~--------------~~~g~~~--~a~~ 346 (697)
T PLN03081 292 AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFS---------IMIRIF--------------SRLALLE--HAKQ 346 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH---------HHHHHH--------------HhccchH--HHHH
Confidence 6777778888999999999999888653 45432211 111111 1111111 1233
Q ss_pred HHHHHHHcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cc
Q 003035 628 VINQMLIND-PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS--IE 704 (855)
Q Consensus 628 ~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~--~~ 704 (855)
+...+++.. +.+...+..+...|.+.|++++|.+.|++..+ | +...|..+...|...|+.++|+..|++..+ ..
T Consensus 347 i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~ 423 (697)
T PLN03081 347 AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--K-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423 (697)
T ss_pred HHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 444555544 55666777888899999999999999998754 3 567899999999999999999999999876 45
Q ss_pred CChHHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-cHHH
Q 003035 705 RTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDIK-HTRA 782 (855)
Q Consensus 705 p~~~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~-~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~-~~~a 782 (855)
|+...|..+..++...|+.++|... |+...+. ....|+ ..|+.+...|.+.|++++|.+.+++.- .. +..+
T Consensus 424 Pd~~T~~~ll~a~~~~g~~~~a~~~----f~~m~~~--~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p~~~~ 496 (697)
T PLN03081 424 PNHVTFLAVLSACRYSGLSEQGWEI----FQSMSEN--HRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP-FKPTVNM 496 (697)
T ss_pred CCHHHHHHHHHHHhcCCcHHHHHHH----HHHHHHh--cCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-CCCCHHH
Confidence 7668888888999999999999999 9988721 145566 789999999999999999999998753 33 8888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh----cCCHHHHHHHHHHHHhc
Q 003035 783 HQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQL 839 (855)
Q Consensus 783 ~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~----~g~~eeA~~~~~kAl~l 839 (855)
|..+...+...|+.+.|...+++.+++.|++...|..++. .|++++|.+.+++..+.
T Consensus 497 ~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 497 WAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999888888887 99999999999877654
No 47
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.74 E-value=2.1e-15 Score=170.93 Aligned_cols=303 Identities=12% Similarity=0.075 Sum_probs=213.3
Q ss_pred HHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhc--chhhhhhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHhhcc
Q 003035 418 RMLALHQLGCVMFEREEYKDACYYFEAAADAG--HIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYN 495 (855)
Q Consensus 418 ~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~--~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~~~ 495 (855)
++...+.-|.+.+..|+|++|++...++-+.. +.-.+...+++...+|+++.|...+.++.+..|+
T Consensus 83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~------------ 150 (398)
T PRK10747 83 RARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADN------------ 150 (398)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc------------
Confidence 34445678888888999999998888766543 2222334466667888877776666555554444
Q ss_pred CcchHHHHHHHHHHhCCCCchhH-HHHHHHHHHhCCHHHHHHHHHHHHccCC-CHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 003035 496 LGREKIVDLNYASELDPTLSFPY-KYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLA 573 (855)
Q Consensus 496 ~~~~A~~~l~~a~~ldP~~~~a~-~~~a~~~~~~~~~~~A~~~~~k~l~~~p-~~~~l~lra~~y~~~gd~~~A~~~~~~ 573 (855)
+..+. ...+.++...|++++|+..+++.++..| ++..+.+.+.+|.+.||+++|++.+.+
T Consensus 151 ------------------~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~ 212 (398)
T PRK10747 151 ------------------DQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPS 212 (398)
T ss_pred ------------------chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 43222 2336677888888888888888888888 467777778888888888888877777
Q ss_pred HHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHc
Q 003035 574 LLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRL 653 (855)
Q Consensus 574 aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~ 653 (855)
+.+..+........+.......++....... ..+ ......+...+..|+++.+++..+..+...
T Consensus 213 l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~-~~~---------------~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~ 276 (398)
T PRK10747 213 MAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ-GSE---------------GLKRWWKNQSRKTRHQVALQVAMAEHLIEC 276 (398)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc-CHH---------------HHHHHHHhCCHHHhCCHHHHHHHHHHHHHC
Confidence 7765543211111000001011111111100 000 011222233344577899999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHH
Q 003035 654 NCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQ 732 (855)
Q Consensus 654 g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~ 732 (855)
|+.++|.+.++++++. |.++......+.+ ..++.+++++..++.++.+|++ ..++.+|.++...+++++|.++
T Consensus 277 g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~--- 350 (398)
T PRK10747 277 DDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLA--- 350 (398)
T ss_pred CCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHH---
Confidence 9999999999999995 4456555555554 4499999999999999999999 8999999999999999999999
Q ss_pred HHHHHhcCCCCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 003035 733 LLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDIK 778 (855)
Q Consensus 733 lle~al~~~~~~~~p~-~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~ 778 (855)
|++++ ...|+ ..+..++.++...|+.++|.++|++++.+.
T Consensus 351 -le~al-----~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 351 -FRAAL-----KQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred -HHHHH-----hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 99999 88888 677889999999999999999999998753
No 48
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.74 E-value=4.5e-16 Score=169.22 Aligned_cols=227 Identities=13% Similarity=0.011 Sum_probs=168.7
Q ss_pred hCCHHHHHHHHHHHHcc---CCC--HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhh
Q 003035 528 EGQIRAAISEIDRIIVF---KLS--VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVR 602 (855)
Q Consensus 528 ~~~~~~A~~~~~k~l~~---~p~--~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~ 602 (855)
.++.+.++..++++|.. +|. +..+..+|.+|..+|++++|+.+|+++++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~---------------------- 96 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD---------------------- 96 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC----------------------
Confidence 35677888888888863 332 456788899999999999998888888776655
Q ss_pred ccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 003035 603 SWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGW 682 (855)
Q Consensus 603 ~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~ 682 (855)
++.+++.+|.++...|++++|+..|+++++++|++..++.++|.
T Consensus 97 ------------------------------------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 140 (296)
T PRK11189 97 ------------------------------------MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGI 140 (296)
T ss_pred ------------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34456778888999999999999999999999999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcC
Q 003035 683 ILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECG 762 (855)
Q Consensus 683 ~~~~~g~~~eAl~~~~kal~~~p~~~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~~a~~~LG~~y~~~g 762 (855)
+++..|++++|++.|+++++++|++.............+++++|+.. |++++ ...+...|. .+.++...|
T Consensus 141 ~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~----l~~~~-----~~~~~~~~~-~~~~~~~lg 210 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKEN----LKQRY-----EKLDKEQWG-WNIVEFYLG 210 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHH----HHHHH-----hhCCccccH-HHHHHHHcc
Confidence 99999999999999999999999872122222334557788999999 87766 322222222 455556666
Q ss_pred CHHHH--HHHHHHHH----hcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-CCHHHHHHHhh
Q 003035 763 KLDQA--ENCYINAL----DIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQ-YSASAFEKRSE 822 (855)
Q Consensus 763 ~~~~A--~~~~~kAL----~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p-~~~~a~~~lg~ 822 (855)
+..++ .+.+.+++ ++. .+.+|+++|.++..+|++++|+.+|+++++.+| ++.+..+.+.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e 279 (296)
T PRK11189 211 KISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLE 279 (296)
T ss_pred CCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 65443 33333222 333 557899999999999999999999999999996 66666665555
No 49
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.73 E-value=7.8e-14 Score=172.81 Aligned_cols=382 Identities=9% Similarity=-0.013 Sum_probs=293.4
Q ss_pred ccccchhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhcchhhhhhHHHHHHHhCChHHHHH
Q 003035 393 EKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYK 472 (855)
Q Consensus 393 ~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~A~~ 472 (855)
..++ .+.|.++|+++.+.+.-.+. ...+..+-..+.+.|..++|...|+.... .+...+..+-..+...|+.+.|..
T Consensus 382 r~G~-l~eAl~Lfd~M~~~gvv~~~-~v~~~~li~~~~~~g~~~eAl~lf~~M~~-pd~~Tyn~LL~a~~k~g~~e~A~~ 458 (1060)
T PLN03218 382 RDGR-IKDCIDLLEDMEKRGLLDMD-KIYHAKFFKACKKQRAVKEAFRFAKLIRN-PTLSTFNMLMSVCASSQDIDGALR 458 (1060)
T ss_pred HCcC-HHHHHHHHHHHHhCCCCCch-HHHHHHHHHHHHHCCCHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCcCHHHHHH
Confidence 4455 88999999988775422222 22333455667788999999999887655 334567777888899999999999
Q ss_pred HHHhHHHcCC-CchHHHHHH----hhccCcchHHHHHHHHHHhCCC-CchhHHHHHHHHHHhCCHHHHHHHHHHHHc--c
Q 003035 473 LINSIISEHK-PTGWMYQER----SLYNLGREKIVDLNYASELDPT-LSFPYKYRAVAKMEEGQIRAAISEIDRIIV--F 544 (855)
Q Consensus 473 ~l~~~i~~~p-~~~~~y~~~----~~~~~~~~A~~~l~~a~~ldP~-~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~--~ 544 (855)
.+..+.+... ++...|... ...+..++|.+.++++.+.... +...|..+...|.+.|++++|+..|+++.. .
T Consensus 459 lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv 538 (1060)
T PLN03218 459 VLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV 538 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC
Confidence 9998876643 333333222 1224557899999998876533 567788888999999999999999999975 5
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccc
Q 003035 545 KLSVDCLELRAWLFIAADDYESALRDTLALLA----LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSV 620 (855)
Q Consensus 545 ~p~~~~l~lra~~y~~~gd~~~A~~~~~~aL~----~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~ 620 (855)
.|+...+..+...|.+.|++++|.+.+..+.. +.|+...+. .++. .|-+.+.+
T Consensus 539 ~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTyn---------aLI~--------------ay~k~G~l 595 (1060)
T PLN03218 539 KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVG---------ALMK--------------ACANAGQV 595 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHH---------HHHH--------------HHHHCCCH
Confidence 67877888888889999999999999999875 356532211 1111 11111111
Q ss_pred cccchHHHHHHHHHcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHH
Q 003035 621 DDIGSLAVINQMLIND-PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH--SSSEHERLVYEGWILYDTGHREEALSRA 697 (855)
Q Consensus 621 ~d~~al~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~--~p~~~~~~~~lg~~~~~~g~~~eAl~~~ 697 (855)
+ .+..++..+.+.+ +.+...|..+...+.+.|++++|+..|++..+. .|+ ...+..+...+...|++++|.+.+
T Consensus 596 d--eA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~ 672 (1060)
T PLN03218 596 D--RAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEIL 672 (1060)
T ss_pred H--HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 1 2456667777766 456778888888899999999999999999876 454 668888999999999999999999
Q ss_pred HHHHhcc--CChHHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003035 698 EKSISIE--RTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINA 774 (855)
Q Consensus 698 ~kal~~~--p~~~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~-~a~~~LG~~y~~~g~~~~A~~~~~kA 774 (855)
++..+.. |+...|..+..+|.+.|+.++|... |++..+ ....|+ ..|+.+...|.+.|++++|++.|++.
T Consensus 673 ~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~l----f~eM~~---~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM 745 (1060)
T PLN03218 673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALEL----YEDIKS---IKLRPTVSTMNALITALCEGNQLPKALEVLSEM 745 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH----HHHHHH---cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9998864 4448899999999999999999999 998862 135677 88999999999999999999999998
Q ss_pred Hhcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 003035 775 LDIK---HTRAHQGLARVYYLKNELKAAYDEMTKLLEKA 810 (855)
Q Consensus 775 L~~~---~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~ 810 (855)
.+.. +...+..+-..+.+.|++++|.+.+.+.++..
T Consensus 746 ~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 746 KRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 8765 88889999999999999999999999998853
No 50
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.73 E-value=4.7e-14 Score=156.34 Aligned_cols=417 Identities=15% Similarity=0.074 Sum_probs=312.3
Q ss_pred hhcccccchhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhcch--hhhhhHHHHHHHhCCh
Q 003035 390 VAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHI--YSLAGLARAKYKVGQQ 467 (855)
Q Consensus 390 ~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~~--~a~~~la~~~~~~g~~ 467 (855)
.+.+... .+.|..+|+++++|-|.+.+ .|.. +.+..-|+.|.+.+++|-+.-|. ..+..-|++--.+|+.
T Consensus 385 aAVelE~-~~darilL~rAveccp~s~d---LwlA----larLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~ 456 (913)
T KOG0495|consen 385 AAVELEE-PEDARILLERAVECCPQSMD---LWLA----LARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNV 456 (913)
T ss_pred HHHhccC-hHHHHHHHHHHHHhccchHH---HHHH----HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCH
Confidence 3344444 44699999999999887643 3333 33456789999999999876444 3566667778888888
Q ss_pred HHHHHHHHhHHHcCCCch-----HHHHHHhhccCcchHHHHHH----HHHHh---CCCCchhHHHHHHHHHHhCCHHHHH
Q 003035 468 YSAYKLINSIISEHKPTG-----WMYQERSLYNLGREKIVDLN----YASEL---DPTLSFPYKYRAVAKMEEGQIRAAI 535 (855)
Q Consensus 468 ~~A~~~l~~~i~~~p~~~-----~~y~~~~~~~~~~~A~~~l~----~a~~l---dP~~~~a~~~~a~~~~~~~~~~~A~ 535 (855)
+.-...+.+.+..-..+| +.+...+.-|+...+..... ..+.+ +-+....|..-|......+-++=|+
T Consensus 457 ~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~car 536 (913)
T KOG0495|consen 457 DMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECAR 536 (913)
T ss_pred HHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHH
Confidence 777777777665544332 22322222222222221111 11111 2233345666677777888888888
Q ss_pred HHHHHHHccCCCHhHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHH-HH
Q 003035 536 SEIDRIIVFKLSVDCLELRAWL-FIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWI-KL 613 (855)
Q Consensus 536 ~~~~k~l~~~p~~~~l~lra~~-y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~-~~ 613 (855)
..|..+|...|....+-+++.. -..-|..++-...+++++...|.... .|+ ..
T Consensus 537 AVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~-------------------------lwlM~a 591 (913)
T KOG0495|consen 537 AVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEI-------------------------LWLMYA 591 (913)
T ss_pred HHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchh-------------------------HHHHHH
Confidence 8888888888866665555543 34557777777778888877775321 122 11
Q ss_pred hhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHH
Q 003035 614 YDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEA 693 (855)
Q Consensus 614 ~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA 693 (855)
-++|...|--++..++.++.+.+|++..+++..-.+..+...++.|...|.++....|. ..+|+.-+.....+++.++|
T Consensus 592 ke~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 592 KEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred HHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHH
Confidence 23444445455677889999999999999999888999999999999999999998775 56788888899999999999
Q ss_pred HHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHH
Q 003035 694 LSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENC 770 (855)
Q Consensus 694 l~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~ 770 (855)
++.++++++.+|++ ..|..+|.++.++++.+.|... |...+ ..-|. ..|..|+.+-...|..-.|...
T Consensus 671 ~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~a----Y~~G~-----k~cP~~ipLWllLakleEk~~~~~rAR~i 741 (913)
T KOG0495|consen 671 LRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREA----YLQGT-----KKCPNSIPLWLLLAKLEEKDGQLVRARSI 741 (913)
T ss_pred HHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHH----HHhcc-----ccCCCCchHHHHHHHHHHHhcchhhHHHH
Confidence 99999999999999 9999999999999999999999 99999 77777 8999999999999999999999
Q ss_pred HHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHH------------------------------HHH
Q 003035 771 YINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSAS------------------------------AFE 818 (855)
Q Consensus 771 ~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~------------------------------a~~ 818 (855)
++++.-.+ +...|...-+.-.+.|+.+.|...+.+|++.-|++.. ++.
T Consensus 742 ldrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVll 821 (913)
T KOG0495|consen 742 LDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLL 821 (913)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHH
Confidence 99999888 7888888888888999999999999999987776543 233
Q ss_pred HHhh----cCCHHHHHHHHHHHHhcCCCCcccchh
Q 003035 819 KRSE----YSDREMAKNDLNMATQLDPLRTYPYRY 849 (855)
Q Consensus 819 ~lg~----~g~~eeA~~~~~kAl~l~P~~~~~~~~ 849 (855)
..|. ..++++|+++|++|++++|+.+..|.+
T Consensus 822 aia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~ 856 (913)
T KOG0495|consen 822 AIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAW 856 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHH
Confidence 3333 678999999999999999999987754
No 51
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.73 E-value=5.6e-15 Score=168.25 Aligned_cols=301 Identities=11% Similarity=0.026 Sum_probs=182.4
Q ss_pred HHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhcch--hhhhhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHhhcc
Q 003035 418 RMLALHQLGCVMFEREEYKDACYYFEAAADAGHI--YSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYN 495 (855)
Q Consensus 418 ~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~~--~a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~~~ 495 (855)
++......|.+.+..|+++.|.+.+.++.+..+. ..+...|+++..+|+.+.|...+.++.+..|++.-
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l--------- 153 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNI--------- 153 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCch---------
Confidence 3444567888999999999999999998876543 34566788888899988887777666655554321
Q ss_pred CcchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003035 496 LGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLAL 574 (855)
Q Consensus 496 ~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p-~~~~l~lra~~y~~~gd~~~A~~~~~~a 574 (855)
.....++.+++..|++++|+..+++.++..| ++..+.+.+.+|...||+++|++.+.+.
T Consensus 154 --------------------~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l 213 (409)
T TIGR00540 154 --------------------LVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNM 213 (409)
T ss_pred --------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 1223357788999999999999999999988 5778888899999999999999999988
Q ss_pred HhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCC----CChHHHHHHHHHH
Q 003035 575 LALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDP----GKSFLRFRQSLLL 650 (855)
Q Consensus 575 L~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p----~~~~~~~~~a~~l 650 (855)
++..+........+........+.. .........+.......| +++.+++..+..+
T Consensus 214 ~k~~~~~~~~~~~l~~~a~~~~l~~--------------------~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l 273 (409)
T TIGR00540 214 AKAGLFDDEEFADLEQKAEIGLLDE--------------------AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHL 273 (409)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHH--------------------HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHH
Confidence 8763221110000000000000000 000001223334444444 3566666666666
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHH--HHHHHHHHHCCCHHHHHHHHHHHHhccCCh---HHHHHHHHHHHHCCCCch
Q 003035 651 LRLNCQKAAMRCLRLARNHSSSEHERL--VYEGWILYDTGHREEALSRAEKSISIERTF---EAFFLKAYILADTNLDPE 725 (855)
Q Consensus 651 ~~~g~~~~A~~~l~~al~~~p~~~~~~--~~lg~~~~~~g~~~eAl~~~~kal~~~p~~---~a~~~lg~~~~~~g~~~~ 725 (855)
...|++++|.+.++++++..|++.... ..........++.+.+++.++++++.+|++ .....+|.++.+.|++++
T Consensus 274 ~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~ 353 (409)
T TIGR00540 274 IDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIE 353 (409)
T ss_pred HHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHH
Confidence 666666666666666666666655421 222333333455566666666666666655 123355666666666666
Q ss_pred hHHHHHHHHH--HHhcCCCCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003035 726 SSTYVIQLLE--EALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALD 776 (855)
Q Consensus 726 A~~~~~~lle--~al~~~~~~~~p~-~a~~~LG~~y~~~g~~~~A~~~~~kAL~ 776 (855)
|.++ |+ .++ ...|+ ..+..+|.++.+.|+.++|.++|++++.
T Consensus 354 A~~~----le~a~a~-----~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 354 AADA----FKNVAAC-----KEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHH----HHHhHHh-----hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6665 55 344 44444 3344556666666666666555555543
No 52
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.72 E-value=2.6e-17 Score=177.03 Aligned_cols=151 Identities=21% Similarity=0.277 Sum_probs=137.2
Q ss_pred cCCCCCCcEEEEEcC-----eEEEeeehhhhcCCHHHHHhhcCCCccCCCCeeEecCCCCCHHHHHHHHHHhccCCCCCC
Q 003035 212 LSLEEDDSVTFCVRD-----KEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLF 286 (855)
Q Consensus 212 ~~~~~~~~V~f~v~~-----~~~~aHr~vLaa~S~~F~~mf~~~~~E~~~~~I~l~~~~is~~~~~~ll~y~YTg~l~~~ 286 (855)
.+++...||+|+|++ ++|||||.|||..|++|.+||+|++.|+...+|.+ +|+.|.+|..+|+|||++.+. +
T Consensus 109 ~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~l--pdvepaaFl~~L~flYsdev~-~ 185 (521)
T KOG2075|consen 109 FNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRL--PDVEPAAFLAFLRFLYSDEVK-L 185 (521)
T ss_pred ccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeec--CCcChhHhHHHHHHHhcchhh-h
Confidence 355666679999973 68999999999999999999999999997789999 999999999999999999999 9
Q ss_pred CHHHHHHHHHHhchhChHHHHHHHHHHHHhhcCChhhHH-HHHHHHHHhccHHHHHHHHHHHHhhhhhhcCChhHHhhhc
Q 003035 287 CPGIVLELLSFANRFCCEEMKSACDAHLASLVGDIEDAL-ILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKIFC 365 (855)
Q Consensus 287 ~~~~~~~ll~~A~~~~~~~Lk~~C~~~l~~~l~~~~n~~-~~~~~A~~~~~~~L~~~c~~~i~~~~~~v~~~~~f~~ll~ 365 (855)
..++++.+|.+|++|.++.|.+.|.+||+..+. .+|.+ .+.+.|..++-++|...|.+.|..++.+.+..+.|.++-+
T Consensus 186 ~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~-~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~al~~EGf~did~ 264 (521)
T KOG2075|consen 186 AADTVITTLYAAKKYLVPALERQCVKFLRKNLM-ADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDALTPEGFCDIDS 264 (521)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhhCccceeehhh
Confidence 999999999999999999999999999999999 66655 5555599999999999999999999999999998877664
Q ss_pred C
Q 003035 366 S 366 (855)
Q Consensus 366 ~ 366 (855)
.
T Consensus 265 ~ 265 (521)
T KOG2075|consen 265 T 265 (521)
T ss_pred H
Confidence 3
No 53
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.72 E-value=1.6e-17 Score=179.51 Aligned_cols=262 Identities=17% Similarity=0.132 Sum_probs=72.5
Q ss_pred hCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHc-c-CC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhc
Q 003035 510 LDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIV-F-KL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHG 586 (855)
Q Consensus 510 ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~-~-~p-~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~ 586 (855)
..|. ... +.+|.++...|++++|++.+++.+. . .| +++.+..+|.+...+|+++.|+..|++++..++.+.....
T Consensus 5 ~~~~-~~~-l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~ 82 (280)
T PF13429_consen 5 FGPS-EEA-LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYE 82 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccc-ccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3455 233 3558899999999999999977654 4 24 4566778899999999999999999999987776432111
Q ss_pred ccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003035 587 RVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLA 666 (855)
Q Consensus 587 ~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~a 666 (855)
++ ..+ ...+++. .++..+.+..+.+ .++..+.....++...++++++...++++
T Consensus 83 ~l-----~~l--~~~~~~~------------------~A~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~l~~~ 136 (280)
T PF13429_consen 83 RL-----IQL--LQDGDPE------------------EALKLAEKAYERD-GDPRYLLSALQLYYRLGDYDEAEELLEKL 136 (280)
T ss_dssp -------------------------------------------------------------H-HHHTT-HHHHHHHHHHH
T ss_pred cc-----ccc--ccccccc------------------ccccccccccccc-cccchhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 11 100 0001111 1222223333322 22333333444555666666666666665
Q ss_pred HhcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCC
Q 003035 667 RNHS--SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSD 743 (855)
Q Consensus 667 l~~~--p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~ 743 (855)
.... |.++..+..+|.++...|+.++|+..|+++++.+|++ .+...++.++...|+++++... ++...
T Consensus 137 ~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~----l~~~~----- 207 (280)
T PF13429_consen 137 EELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREA----LKRLL----- 207 (280)
T ss_dssp HH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHH----HHHHH-----
T ss_pred HhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHH----HHHHH-----
Confidence 5433 4555566666666666666666666666666666666 5666666666666666655544 44433
Q ss_pred CCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003035 744 GLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLE 808 (855)
Q Consensus 744 ~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~ 808 (855)
...|. ..+..+|.+|...|++++|+..|+++++.+ |+.++..+|.++...|+.++|...+.++++
T Consensus 208 ~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 208 KAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred HHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 21122 344555566666666666666666655554 555555666666666666666555555543
No 54
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.72 E-value=9.3e-18 Score=159.97 Aligned_cols=138 Identities=22% Similarity=0.316 Sum_probs=120.9
Q ss_pred cCCCCCCcEEEEEc---CeEEEeeehhhhcCCHHHHHhhcCCCccCCCCeeEecCCCCCHHHHHHHHHHhccCCCCC-CC
Q 003035 212 LSLEEDDSVTFCVR---DKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDL-FC 287 (855)
Q Consensus 212 ~~~~~~~~V~f~v~---~~~~~aHr~vLaa~S~~F~~mf~~~~~E~~~~~I~l~~~~is~~~~~~ll~y~YTg~l~~-~~ 287 (855)
.....+|||+|.++ ++.|+|||.|||+||++++ |.++-.|. ..+..+ .|+.+++|..+++||||++++. .+
T Consensus 61 ~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~dek-se~~~~--dDad~Ea~~t~iRWIYTDEidfk~d 135 (280)
T KOG4591|consen 61 LEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEK-SEELDL--DDADFEAFHTAIRWIYTDEIDFKED 135 (280)
T ss_pred hhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcc-hhhhcc--cccCHHHHHHhheeeeccccccccc
Confidence 34567778999997 5789999999999999886 34443333 235566 8999999999999999999995 56
Q ss_pred HHHHHHHHHHhchhChHHHHHHHHHHHHhhcCChhhHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhc
Q 003035 288 PGIVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSL 355 (855)
Q Consensus 288 ~~~~~~ll~~A~~~~~~~Lk~~C~~~l~~~l~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~v~ 355 (855)
.+.+.+++.+|++|+++.|+..|++-+...++ ++||+.++++|++.++.+|...|...|..+.+++-
T Consensus 136 D~~L~el~e~An~FqLe~Lke~C~k~l~a~l~-V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL~ 202 (280)
T KOG4591|consen 136 DEFLLELCELANRFQLELLKERCEKGLGALLH-VDNCIKFYEFAEELNARQLMNVAAEIIAGAWDDLG 202 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh-HhhHHHHHHHHHHhhHHHHHHHHHHHHHhhccccC
Confidence 77889999999999999999999999999999 99999999999999999999999999999998763
No 55
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.71 E-value=9.1e-13 Score=146.29 Aligned_cols=358 Identities=10% Similarity=0.020 Sum_probs=262.6
Q ss_pred hhhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHh----hccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHHhC
Q 003035 454 LAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERS----LYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEG 529 (855)
Q Consensus 454 ~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~----~~~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~ 529 (855)
+..-+....+.+..+-|...|..+++.+|.....+.... .|+..+.-...+.+|++.-|.....|+..|..+...|
T Consensus 519 w~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~ag 598 (913)
T KOG0495|consen 519 WLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAG 598 (913)
T ss_pred HhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcC
Confidence 344456667777777788888888888887655554443 3455566667788888888888888888888888888
Q ss_pred CHHHHHHHHHHHHccCCCH-hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhh
Q 003035 530 QIRAAISEIDRIIVFKLSV-DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPAD 608 (855)
Q Consensus 530 ~~~~A~~~~~k~l~~~p~~-~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~ 608 (855)
+..+|...+.+++..+|+. +.+...-.+-....+++.|...+.++....|.-............. +.
T Consensus 599 dv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~l-------d~----- 666 (913)
T KOG0495|consen 599 DVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYL-------DN----- 666 (913)
T ss_pred CcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHh-------hh-----
Confidence 8888888888888888864 3444334456677788888888888887666543222111111000 00
Q ss_pred hHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC
Q 003035 609 CWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTG 688 (855)
Q Consensus 609 ~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g 688 (855)
+ -+++..+...++..|.-..+|..+|.++-+.++.+.|...|...++..|+....|..++.+-...|
T Consensus 667 -----------~--eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~ 733 (913)
T KOG0495|consen 667 -----------V--EEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG 733 (913)
T ss_pred -----------H--HHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc
Confidence 0 124556677888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHH
Q 003035 689 HREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLD 765 (855)
Q Consensus 689 ~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~ 765 (855)
+.-.|...++++.-.+|++ ..|...-.+-.+.|+.+.|... +-+|+ .--|+ ..|..--.+.-.-++-.
T Consensus 734 ~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~l----makAL-----Qecp~sg~LWaEaI~le~~~~rkT 804 (913)
T KOG0495|consen 734 QLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELL----MAKAL-----QECPSSGLLWAEAIWLEPRPQRKT 804 (913)
T ss_pred chhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHH----HHHHH-----HhCCccchhHHHHHHhccCcccch
Confidence 8888888888888888888 8888888888888888888888 77777 33333 22221111111223333
Q ss_pred HHHHHHHHHHhcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh----cCCHHHHHHHHHHHHhcC
Q 003035 766 QAENCYINALDIK-HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLD 840 (855)
Q Consensus 766 ~A~~~~~kAL~~~-~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~----~g~~eeA~~~~~kAl~l~ 840 (855)
++++.+++. . |+.++...|..++...++++|.++|.++++++|++.++|-..-. .|.-++-++.+.+...-+
T Consensus 805 ks~DALkkc---e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E 881 (913)
T KOG0495|consen 805 KSIDALKKC---EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE 881 (913)
T ss_pred HHHHHHHhc---cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 333333322 2 88999999999999999999999999999999999887765554 888889999999999999
Q ss_pred CCCcccch
Q 003035 841 PLRTYPYR 848 (855)
Q Consensus 841 P~~~~~~~ 848 (855)
|..++-|.
T Consensus 882 P~hG~~W~ 889 (913)
T KOG0495|consen 882 PTHGELWQ 889 (913)
T ss_pred CCCCcHHH
Confidence 99887663
No 56
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=3e-14 Score=150.65 Aligned_cols=397 Identities=12% Similarity=0.016 Sum_probs=280.8
Q ss_pred HHHHhhcccccchhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhcchhhhhhHHHHHHHhC
Q 003035 386 FLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVG 465 (855)
Q Consensus 386 ~La~~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~~~a~~~la~~~~~~g 465 (855)
+.+..|-..++ .+.|+..+.+.+..-..+ .....++..+-.-++-.++.-.|...+...+...-.-.+.+...-+
T Consensus 102 ~~aecy~~~~n-~~~Ai~~l~~~p~t~r~p----~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~ 176 (564)
T KOG1174|consen 102 RAAECYRQIGN-TDMAIETLLQVPPTLRSP----RINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVN 176 (564)
T ss_pred HHHHHHHHHcc-chHHHHHHhcCCccccch----hHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhc
Confidence 34455555555 667777766655432221 1223455555555555566666666655444321111111111111
Q ss_pred ChHHHHHHHHhHHHcCCCchHHHHHHhhc---cCcc----hHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHH
Q 003035 466 QQYSAYKLINSIISEHKPTGWMYQERSLY---NLGR----EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEI 538 (855)
Q Consensus 466 ~~~~A~~~l~~~i~~~p~~~~~y~~~~~~---~~~~----~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~ 538 (855)
-...+-. --.++...|...|.+..+..+ +.++ .+...+-.-...-|+|......+|.++...|++++|+-.|
T Consensus 177 g~e~~S~-~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~F 255 (564)
T KOG1174|consen 177 GNEINSL-VMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIF 255 (564)
T ss_pred chhhhhh-hhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHH
Confidence 1111111 112345566666665444322 2222 2333444555667888888888999999999999999999
Q ss_pred HHHHccCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhc
Q 003035 539 DRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRW 617 (855)
Q Consensus 539 ~k~l~~~p~-~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~ 617 (855)
+++..++|. .......|.+....|+++.-......++..+.... ..|-.+ .--.|
T Consensus 256 e~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta-------------------~~wfV~-----~~~l~ 311 (564)
T KOG1174|consen 256 SSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTA-------------------SHWFVH-----AQLLY 311 (564)
T ss_pred HHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcch-------------------hhhhhh-----hhhhh
Confidence 999999884 45555567777888888887666666665442211 011111 00111
Q ss_pred ccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Q 003035 618 SSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRA 697 (855)
Q Consensus 618 ~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~ 697 (855)
...+...++....+.+..+|.+..++..+|.++...|+.++|+-.|+.|..+.|..-+.|-.+-..|...|++.||....
T Consensus 312 ~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~A 391 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALA 391 (564)
T ss_pred hhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHH
Confidence 12222336777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCh-HHHHHHH-HHHHH-CCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHH
Q 003035 698 EKSISIERTF-EAFFLKA-YILAD-TNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYI 772 (855)
Q Consensus 698 ~kal~~~p~~-~a~~~lg-~~~~~-~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~ 772 (855)
..+++..|.+ .++..+| .++.- ..--++|.+. +++++ .++|+ .+-+.++.++...|++..++..++
T Consensus 392 n~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf----~ek~L-----~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 392 NWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKF----AEKSL-----KINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHhhcchhhhhhhcceeeccCchhHHHHHHH----HHhhh-----ccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 9999999999 8888886 44443 3444667777 99999 99999 889999999999999999999999
Q ss_pred HHHhcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHh
Q 003035 773 NALDIK-HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS 821 (855)
Q Consensus 773 kAL~~~-~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg 821 (855)
+.|... |...|..||.++...+.+.+|.++|.+|+.++|++-.+...+-
T Consensus 463 ~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~ 512 (564)
T KOG1174|consen 463 KHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLR 512 (564)
T ss_pred HHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 999999 9999999999999999999999999999999999877765543
No 57
>PLN03077 Protein ECB2; Provisional
Probab=99.71 E-value=5.9e-14 Score=174.97 Aligned_cols=417 Identities=9% Similarity=-0.041 Sum_probs=306.5
Q ss_pred chhhHHHHHHHHHhhcccccchhhHHHHHHHHhhc--hhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhcchhhh
Q 003035 377 GHASFLLYYFLSQVAMEKDRVSNTTVMLLERLGEC--STERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSL 454 (855)
Q Consensus 377 ~~~~f~l~~~La~~~~~~~~~~~~a~~~le~~~~~--~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~~~a~ 454 (855)
.|..+.+. .+-......++ .+.+.+++..+.+. .|+ ...+..|...|.+.|++++|.+.|++... .+..++
T Consensus 285 ~Pd~~ty~-~ll~a~~~~g~-~~~a~~l~~~~~~~g~~~d----~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-~d~~s~ 357 (857)
T PLN03077 285 DPDLMTIT-SVISACELLGD-ERLGREMHGYVVKTGFAVD----VSVCNSLIQMYLSLGSWGEAEKVFSRMET-KDAVSW 357 (857)
T ss_pred CCChhHHH-HHHHHHHhcCC-hHHHHHHHHHHHHhCCccc----hHHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCeeeH
Confidence 45544433 33344445555 77888888887763 333 35678899999999999999999998654 344578
Q ss_pred hhHHHHHHHhCChHHHHHHHHhHHHc--CCCchHH---HHHHhhccCcchHHHHHHHHHHhCCC-CchhHHHHHHHHHHh
Q 003035 455 AGLARAKYKVGQQYSAYKLINSIISE--HKPTGWM---YQERSLYNLGREKIVDLNYASELDPT-LSFPYKYRAVAKMEE 528 (855)
Q Consensus 455 ~~la~~~~~~g~~~~A~~~l~~~i~~--~p~~~~~---y~~~~~~~~~~~A~~~l~~a~~ldP~-~~~a~~~~a~~~~~~ 528 (855)
..+...|.+.|+.++|++.+++..+. .|+.... ...-...+..++|.+.++.+.+.... +...+..+...|.+.
T Consensus 358 n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~ 437 (857)
T PLN03077 358 TAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC 437 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHc
Confidence 88889999999999999999987554 3543221 11112234557888888888876543 445667788899999
Q ss_pred CCHHHHHHHHHHHHccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCchhhhhcccchhHHHHHHHHHhhccChh
Q 003035 529 GQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLAL-ESNYMMFHGRVSGDHLVKLLNHHVRSWSPA 607 (855)
Q Consensus 529 ~~~~~A~~~~~k~l~~~p~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~-~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a 607 (855)
|++++|.+.|+++.. ++...+..+...|...|+.++|+..|++.+.. .|+...+..-+.+ .
T Consensus 438 g~~~~A~~vf~~m~~--~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a---------~------- 499 (857)
T PLN03077 438 KCIDKALEVFHNIPE--KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSA---------C------- 499 (857)
T ss_pred CCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHH---------H-------
Confidence 999999999998764 45555666667888999999999999998743 4554322111111 0
Q ss_pred hhHHHHhhhcccccccchHHHHHHHHHcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 003035 608 DCWIKLYDRWSSVDDIGSLAVINQMLIND-PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYD 686 (855)
Q Consensus 608 ~~~~~~~~~~~~~~d~~al~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~ 686 (855)
.+.+..+. ...+...+++.. ..+......+-..|.+.|+.++|.+.|+.. +.+...|..+...|..
T Consensus 500 -------~~~g~l~~--~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~ 566 (857)
T PLN03077 500 -------ARIGALMC--GKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVA 566 (857)
T ss_pred -------hhhchHHH--hHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHH
Confidence 00000000 111222222222 223334445556789999999999999886 5678899999999999
Q ss_pred CCCHHHHHHHHHHHHh--ccCChHHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH-HHHHHHHHHHHHcCC
Q 003035 687 TGHREEALSRAEKSIS--IERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG-QALNNLGSIYVECGK 763 (855)
Q Consensus 687 ~g~~~eAl~~~~kal~--~~p~~~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~-~a~~~LG~~y~~~g~ 763 (855)
.|+.++|+..|++..+ ..|+...|..+-.++...|+.++|... |+...+.. .+.|+ ..|+.+...+.+.|+
T Consensus 567 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~----f~~M~~~~--gi~P~~~~y~~lv~~l~r~G~ 640 (857)
T PLN03077 567 HGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEY----FHSMEEKY--SITPNLKHYACVVDLLGRAGK 640 (857)
T ss_pred cCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHH----HHHHHHHh--CCCCchHHHHHHHHHHHhCCC
Confidence 9999999999999887 456666677777789999999999999 98876211 45677 899999999999999
Q ss_pred HHHHHHHHHHHHhcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh----cCCHHHHHHHHHHHHh
Q 003035 764 LDQAENCYINALDIK-HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQ 838 (855)
Q Consensus 764 ~~~A~~~~~kAL~~~-~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~----~g~~eeA~~~~~kAl~ 838 (855)
+++|.+.+++. .+. +..+|..+-..+...|+.+.|....++++++.|+++..|..++. .|++++|.+..+..-+
T Consensus 641 ~~eA~~~~~~m-~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 641 LTEAYNFINKM-PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred HHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 99999999875 455 88888888888888999999999999999999999999999987 8999999988876544
No 58
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.71 E-value=2.9e-17 Score=177.52 Aligned_cols=257 Identities=18% Similarity=0.167 Sum_probs=103.4
Q ss_pred HhhhhHhhhhcHHHHHHHHHHHHH-h---cchhhhhhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHhhccCcch
Q 003035 424 QLGCVMFEREEYKDACYYFEAAAD-A---GHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGRE 499 (855)
Q Consensus 424 ~LG~~~l~~g~~~eA~~~~~~Al~-~---~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~~~~~~~ 499 (855)
.+|.+++..|++++|.+.+++++. . ++...+..+|.+....|+++.|...+++
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~----------------------- 69 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEK----------------------- 69 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----------------------
Confidence 456666677777777776654432 1 1222333444444444554444444444
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 003035 500 KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALES 579 (855)
Q Consensus 500 A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P 579 (855)
+++.+|.++..+..++.+ ...+++++|+..+.+.....+++..+.....++...|+++++.+.++.+....
T Consensus 70 -------l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~- 140 (280)
T PF13429_consen 70 -------LLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELP- 140 (280)
T ss_dssp --------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T-
T ss_pred -------cccccccccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc-
Confidence 344444444444444444 56677777777776666655555555555566667777776666555544211
Q ss_pred chhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHH
Q 003035 580 NYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAA 659 (855)
Q Consensus 580 ~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A 659 (855)
..|.++..++..|.++.+.|+.++|
T Consensus 141 -------------------------------------------------------~~~~~~~~~~~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 141 -------------------------------------------------------AAPDSARFWLALAEIYEQLGDPDKA 165 (280)
T ss_dssp ----------------------------------------------------------T-HHHHHHHHHHHHHCCHHHHH
T ss_pred -------------------------------------------------------CCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 1245566777888888899999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHh
Q 003035 660 MRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEAL 738 (855)
Q Consensus 660 ~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al 738 (855)
++.|+++++.+|+++++...+++++...|+++++...++...+..|++ ..+..+|.++...|++++|+.. |++++
T Consensus 166 ~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~----~~~~~ 241 (280)
T PF13429_consen 166 LRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEY----LEKAL 241 (280)
T ss_dssp HHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHH----HHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccc----ccccc
Confidence 999999999999999999999999999999988777777777776666 7777889999999999999999 99888
Q ss_pred cCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003035 739 RCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALD 776 (855)
Q Consensus 739 ~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~ 776 (855)
...|+ ..+.++|.++...|+.++|.+.++++++
T Consensus 242 -----~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 242 -----KLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -----HHSTT-HHHHHHHHHHHT-----------------
T ss_pred -----ccccccccccccccccccccccccccccccccccc
Confidence 76665 7788889999999999999998888765
No 59
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.70 E-value=9.7e-15 Score=166.30 Aligned_cols=288 Identities=11% Similarity=-0.026 Sum_probs=215.8
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHccCCCHh-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHH
Q 003035 519 KYRAVAKMEEGQIRAAISEIDRIIVFKLSVD-CLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLL 597 (855)
Q Consensus 519 ~~~a~~~~~~~~~~~A~~~~~k~l~~~p~~~-~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll 597 (855)
..+|.+.+..|+++.|...+.++.+..|++. .+.+.|.++..+|+++.|...++++.+..|+..... ......+
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~-----~~~~a~l 162 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILV-----EIARTRI 162 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHH-----HHHHHHH
Confidence 3457778888899999888888888877654 344567888888999999998888888777753110 0000001
Q ss_pred HHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 003035 598 NHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERL 677 (855)
Q Consensus 598 ~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~ 677 (855)
.-..++ ...++..+...++..|+++.++...+.++.++|++++|.+.+++..+..+.++...
T Consensus 163 ~l~~~~------------------~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~ 224 (409)
T TIGR00540 163 LLAQNE------------------LHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEF 224 (409)
T ss_pred HHHCCC------------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHH
Confidence 111111 12245667888888899999999999999999999999999999998754443332
Q ss_pred ----HHHHHHHHHCCCHHHHHHHHHHHHhccC----Ch-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH
Q 003035 678 ----VYEGWILYDTGHREEALSRAEKSISIER----TF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG 748 (855)
Q Consensus 678 ----~~lg~~~~~~g~~~eAl~~~~kal~~~p----~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~ 748 (855)
...+.-+...+..+++...+.++.+..| ++ ..+..+|..+...|++++|... +++++ +..|+
T Consensus 225 ~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~----l~~~l-----~~~pd 295 (409)
T TIGR00540 225 ADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEI----IFDGL-----KKLGD 295 (409)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHH----HHHHH-----hhCCC
Confidence 1222222455566667778888888877 35 8899999999999999999999 99999 66665
Q ss_pred HH----HHHHHHHHHHcCCHHHHHHHHHHHHhcc--cH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHHccCCHHHHH
Q 003035 749 QA----LNNLGSIYVECGKLDQAENCYINALDIK--HT--RAHQGLARVYYLKNELKAAYDEMT--KLLEKAQYSASAFE 818 (855)
Q Consensus 749 ~a----~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~--~a~~~lg~~~~~~g~~~~A~~~~~--kal~~~p~~~~a~~ 818 (855)
.. ...........++.+.+++.++++++.+ ++ ..+..+|+++.+.|++++|.++|+ ++++..|++.. +.
T Consensus 296 ~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~ 374 (409)
T TIGR00540 296 DRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LA 374 (409)
T ss_pred cccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HH
Confidence 11 2334444555688899999999999998 78 888999999999999999999999 57778887655 55
Q ss_pred HHhh----cCCHHHHHHHHHHHHhc
Q 003035 819 KRSE----YSDREMAKNDLNMATQL 839 (855)
Q Consensus 819 ~lg~----~g~~eeA~~~~~kAl~l 839 (855)
++|. .|+.++|.++|++++.+
T Consensus 375 ~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 375 MAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888 99999999999998764
No 60
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.70 E-value=2.5e-15 Score=148.94 Aligned_cols=198 Identities=21% Similarity=0.183 Sum_probs=176.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHH
Q 003035 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILA 718 (855)
Q Consensus 640 ~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~ 718 (855)
..++..+|+-|++.|++..|.+.+++|++++|+...+|..++.+|...|+.+.|-+.|++|++++|++ +++++.|..+.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 34678889999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HCCCCchhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCH
Q 003035 719 DTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNEL 796 (855)
Q Consensus 719 ~~g~~~~A~~~~~~lle~al~~~~~~~~p~~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~ 796 (855)
.+|++++|... |++|+..|. --.|...+-|+|.|..+.|+.+.|...|+++|+++ ++.+...++..+++.|++
T Consensus 115 ~qg~~~eA~q~----F~~Al~~P~-Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y 189 (250)
T COG3063 115 AQGRPEEAMQQ----FERALADPA-YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDY 189 (250)
T ss_pred hCCChHHHHHH----HHHHHhCCC-CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccc
Confidence 99999999999 999994332 11222899999999999999999999999999999 889999999999999999
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHhh-----cCCHHHHHHHHHHHHhcCCCC
Q 003035 797 KAAYDEMTKLLEKAQYSASAFEKRSE-----YSDREMAKNDLNMATQLDPLR 843 (855)
Q Consensus 797 ~~A~~~~~kal~~~p~~~~a~~~lg~-----~g~~eeA~~~~~kAl~l~P~~ 843 (855)
..|...+++....-+-.++.+ .||+ .||.+.|-++=.+--...|..
T Consensus 190 ~~Ar~~~~~~~~~~~~~A~sL-~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 190 APARLYLERYQQRGGAQAESL-LLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred hHHHHHHHHHHhcccccHHHH-HHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 999999999888877666664 4455 899998887766666666654
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.69 E-value=5.7e-16 Score=159.13 Aligned_cols=240 Identities=16% Similarity=0.073 Sum_probs=205.0
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHH
Q 003035 521 RAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHH 600 (855)
Q Consensus 521 ~a~~~~~~~~~~~A~~~~~k~l~~~p~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~ 600 (855)
+|.+|...|.+..|...++..|+..|-++.+.+++.+|....+.+.|+..|.+.+.
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld------------------------ 284 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD------------------------ 284 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh------------------------
Confidence 56777777888888888887777777777777777777777777666655555554
Q ss_pred hhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 003035 601 VRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYE 680 (855)
Q Consensus 601 ~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~l 680 (855)
..|.+.-.+..++.++-..+++++|.++|+.+++.+|.+.++.--+
T Consensus 285 ----------------------------------~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAci 330 (478)
T KOG1129|consen 285 ----------------------------------SFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACI 330 (478)
T ss_pred ----------------------------------cCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeee
Confidence 4455555566677888889999999999999999999999999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 003035 681 GWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYV 759 (855)
Q Consensus 681 g~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~~a~~~LG~~y~ 759 (855)
|.-|+-.++.+-|+.+|++.+++--.+ +.+.++|.+....++++-++.. |++|+...+..-...++|+|||.+..
T Consensus 331 a~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~s----f~RAlstat~~~~aaDvWYNlg~vaV 406 (478)
T KOG1129|consen 331 AVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPS----FQRALSTATQPGQAADVWYNLGFVAV 406 (478)
T ss_pred eeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHH----HHHHHhhccCcchhhhhhhccceeEE
Confidence 999999999999999999999999888 9999999999999999999999 99999444322222299999999999
Q ss_pred HcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh
Q 003035 760 ECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE 822 (855)
Q Consensus 760 ~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~ 822 (855)
..|++..|..||+-+|.-+ +..+++|||.+-.+.|+.++|..+++.|-.+.|+-.+..++++-
T Consensus 407 ~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~ 471 (478)
T KOG1129|consen 407 TIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQF 471 (478)
T ss_pred eccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeE
Confidence 9999999999999999988 89999999999999999999999999999999998887777664
No 62
>PLN03077 Protein ECB2; Provisional
Probab=99.69 E-value=2.8e-13 Score=168.90 Aligned_cols=439 Identities=8% Similarity=0.005 Sum_probs=262.9
Q ss_pred HHHHHhhcccccchhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhc--c-hhhhhhHHHHH
Q 003035 385 YFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAG--H-IYSLAGLARAK 461 (855)
Q Consensus 385 ~~La~~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~--~-~~a~~~la~~~ 461 (855)
..|-..+...++ .+.|..+|++....+. ..|..+-..|.+.|++++|.+.|++..+.+ | ...+..+...+
T Consensus 226 n~Li~~y~k~g~-~~~A~~lf~~m~~~d~------~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~ 298 (857)
T PLN03077 226 NALITMYVKCGD-VVSARLVFDRMPRRDC------ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC 298 (857)
T ss_pred hHHHHHHhcCCC-HHHHHHHHhcCCCCCc------chhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Confidence 334445555555 6666666666543222 234455556666666666666666665532 1 22344444555
Q ss_pred HHhCChHHHHHHHHhHHHcC-CCchHHHHHHh----hccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHH
Q 003035 462 YKVGQQYSAYKLINSIISEH-KPTGWMYQERS----LYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAIS 536 (855)
Q Consensus 462 ~~~g~~~~A~~~l~~~i~~~-p~~~~~y~~~~----~~~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~ 536 (855)
...|+.+.|.+.+..+++.. +.+...|.... ..+..++|.+.+++.. ..+...|..+...|.+.|++++|+.
T Consensus 299 ~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~A~~ 375 (857)
T PLN03077 299 ELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME---TKDAVSWTAMISGYEKNGLPDKALE 375 (857)
T ss_pred HhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCeeeHHHHHHHHHhCCCHHHHHH
Confidence 55666666665555554332 12222221111 1133355555555542 2234456666666666666666666
Q ss_pred HHHHHHc--cCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--hhhhh------cccc-hhHHHHHHHHHhhccC
Q 003035 537 EIDRIIV--FKLSVDCLELRAWLFIAADDYESALRDTLALLALESN--YMMFH------GRVS-GDHLVKLLNHHVRSWS 605 (855)
Q Consensus 537 ~~~k~l~--~~p~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~--~~~~~------~~~~-~~~l~~ll~~~~~~~~ 605 (855)
.|+++.. ..|+...+...-..+...|+++.|.+.+..+...... ...+. .+.+ .+....++..... .
T Consensus 376 lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-~- 453 (857)
T PLN03077 376 TYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE-K- 453 (857)
T ss_pred HHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC-C-
Confidence 6665543 3354444443334555666666666666666543321 10000 0000 0000000000000 0
Q ss_pred hhhhHHH---HhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHH
Q 003035 606 PADCWIK---LYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS-SEHERLVYEG 681 (855)
Q Consensus 606 ~a~~~~~---~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p-~~~~~~~~lg 681 (855)
....|-. .|.. .....+++..+.+++...+.+...+...-..+.+.|+.+.+.+.+..+++..- .+......+-
T Consensus 454 d~vs~~~mi~~~~~--~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi 531 (857)
T PLN03077 454 DVISWTSIIAGLRL--NNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALL 531 (857)
T ss_pred CeeeHHHHHHHHHH--CCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHH
Confidence 0001110 0111 01112245555555554444444555444556667777777777766665432 2334445677
Q ss_pred HHHHHCCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH-HHHHHHHHHHHH
Q 003035 682 WILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG-QALNNLGSIYVE 760 (855)
Q Consensus 682 ~~~~~~g~~~eAl~~~~kal~~~p~~~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~-~a~~~LG~~y~~ 760 (855)
..|.+.|+.++|...|++. .|+..+|..+...|...|+.++|+.. |++..+ ....|+ ..++.+-..+..
T Consensus 532 ~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~l----f~~M~~---~g~~Pd~~T~~~ll~a~~~ 601 (857)
T PLN03077 532 DLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVEL----FNRMVE---SGVNPDEVTFISLLCACSR 601 (857)
T ss_pred HHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHH----HHHHHH---cCCCCCcccHHHHHHHHhh
Confidence 8899999999999999886 44449999999999999999999999 998872 246677 777777788999
Q ss_pred cCCHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh----cCCHHHHHHH
Q 003035 761 CGKLDQAENCYINALDIK----HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKND 832 (855)
Q Consensus 761 ~g~~~~A~~~~~kAL~~~----~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~----~g~~eeA~~~ 832 (855)
.|++++|.+.|+...+.. +...|..+...+.+.|++++|.+.+++. ...|+ +..|..|-. .|+.+.|...
T Consensus 602 ~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~ 679 (857)
T PLN03077 602 SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELA 679 (857)
T ss_pred cChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHH
Confidence 999999999999998443 7788999999999999999999999875 35565 566666555 8999999999
Q ss_pred HHHHHhcCCCCcccchh
Q 003035 833 LNMATQLDPLRTYPYRY 849 (855)
Q Consensus 833 ~~kAl~l~P~~~~~~~~ 849 (855)
.++.++++|+++..|..
T Consensus 680 a~~l~~l~p~~~~~y~l 696 (857)
T PLN03077 680 AQHIFELDPNSVGYYIL 696 (857)
T ss_pred HHHHHhhCCCCcchHHH
Confidence 99999999999876653
No 63
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.68 E-value=1e-13 Score=168.86 Aligned_cols=416 Identities=11% Similarity=-0.000 Sum_probs=309.6
Q ss_pred cccccchhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhc---chhhhhhHHHHHHHhCChH
Q 003035 392 MEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAG---HIYSLAGLARAKYKVGQQY 468 (855)
Q Consensus 392 ~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~---~~~a~~~la~~~~~~g~~~ 468 (855)
...++ .+.|..+++.+....+-.+ ...++..+-..+.+.++++.|.+.+..++..+ +...+..+...|.+.|+.+
T Consensus 98 ~~~g~-~~~Al~~f~~m~~~~~~~~-~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~ 175 (697)
T PLN03081 98 VACGR-HREALELFEILEAGCPFTL-PASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLI 175 (697)
T ss_pred HcCCC-HHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHH
Confidence 34455 8889999988865322111 12466777778888999999999999888754 3356778889999999999
Q ss_pred HHHHHHHhHHHcCCCc-hHHHHHH--hhccCcchHHHHHHHHHHhCCC-CchhHHHHHHHHHHhCCHHHHHHHHHHHHcc
Q 003035 469 SAYKLINSIISEHKPT-GWMYQER--SLYNLGREKIVDLNYASELDPT-LSFPYKYRAVAKMEEGQIRAAISEIDRIIVF 544 (855)
Q Consensus 469 ~A~~~l~~~i~~~p~~-~~~y~~~--~~~~~~~~A~~~l~~a~~ldP~-~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~ 544 (855)
.|...+++..+ |+. .|..... ...+..++|++.|++..+..+. +...|..+...+...|..+.+.+....+++.
T Consensus 176 ~A~~lf~~m~~--~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~ 253 (697)
T PLN03081 176 DARRLFDEMPE--RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKT 253 (697)
T ss_pred HHHHHHhcCCC--CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 99999988753 332 1211111 1224558899999988876433 2345556666778889999998888887763
Q ss_pred --CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccc
Q 003035 545 --KLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDD 622 (855)
Q Consensus 545 --~p~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d 622 (855)
.|+...+..+...|.+.|++++|.+.|+.... |+ ...+ ..++.. |-+.+..
T Consensus 254 g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~~-~vt~--------n~li~~--------------y~~~g~~-- 306 (697)
T PLN03081 254 GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE--KT-TVAW--------NSMLAG--------------YALHGYS-- 306 (697)
T ss_pred CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC--CC-hhHH--------HHHHHH--------------HHhCCCH--
Confidence 45555566667889999999999998886532 21 1111 111111 1111111
Q ss_pred cchHHHHHHHHHcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 003035 623 IGSLAVINQMLIND-PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHS-SSEHERLVYEGWILYDTGHREEALSRAEKS 700 (855)
Q Consensus 623 ~~al~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~-p~~~~~~~~lg~~~~~~g~~~eAl~~~~ka 700 (855)
.+++.++.++.+.. .-+...+..+...+.+.|++++|.+.+..+++.. +.+..++..+...|.+.|+.++|.+.|++.
T Consensus 307 ~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m 386 (697)
T PLN03081 307 EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386 (697)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC
Confidence 12466677776554 3356677788888999999999999999999876 557788899999999999999999999987
Q ss_pred HhccCChHHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-
Q 003035 701 ISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDIK- 778 (855)
Q Consensus 701 l~~~p~~~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~-~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~- 778 (855)
.+ |+...|..+...|.+.|+.++|++. |++..+ ....|+ ..++.+-..+...|+.++|.+.|+...+..
T Consensus 387 ~~--~d~~t~n~lI~~y~~~G~~~~A~~l----f~~M~~---~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g 457 (697)
T PLN03081 387 PR--KNLISWNALIAGYGNHGRGTKAVEM----FERMIA---EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR 457 (697)
T ss_pred CC--CCeeeHHHHHHHHHHcCCHHHHHHH----HHHHHH---hCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Confidence 54 4448899999999999999999999 998872 246677 888889999999999999999999998743
Q ss_pred ---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCCcccchh
Q 003035 779 ---HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLDPLRTYPYRY 849 (855)
Q Consensus 779 ---~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~----~g~~eeA~~~~~kAl~l~P~~~~~~~~ 849 (855)
+...|..+...+.+.|++++|.+.+++. ...| +...|..+.. .|+.+.|+..+++.++++|++...|..
T Consensus 458 ~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~ 533 (697)
T PLN03081 458 IKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVV 533 (697)
T ss_pred CCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHH
Confidence 6678899999999999999999998764 2334 3556776655 899999999999999999998766653
No 64
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.68 E-value=7.9e-14 Score=160.58 Aligned_cols=367 Identities=16% Similarity=0.092 Sum_probs=230.8
Q ss_pred HhhcccccchhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHh--cchhhhhhHHHHHHHhCC
Q 003035 389 QVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADA--GHIYSLAGLARAKYKVGQ 466 (855)
Q Consensus 389 ~~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~--~~~~a~~~la~~~~~~g~ 466 (855)
......|+ .++|..++.++++.+|..+ .+|+.||.+|-++|+..+|..+.-.|-.. ++..-|..++.....+|+
T Consensus 147 N~lfarg~-~eeA~~i~~EvIkqdp~~~---~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 147 NNLFARGD-LEEAEEILMEVIKQDPRNP---IAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHhCC-HHHHHHHHHHHHHhCccch---hhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhccc
Confidence 33444566 9999999999999999874 68999999999999999999988877544 344668888888889999
Q ss_pred hHHHHHHHHhHHHcCCCchHHHHHHhhc----cCcchHHHHHHHHHHhCCCCch----hHHHH-HHHHHHhCCHHHHHHH
Q 003035 467 QYSAYKLINSIISEHKPTGWMYQERSLY----NLGREKIVDLNYASELDPTLSF----PYKYR-AVAKMEEGQIRAAISE 537 (855)
Q Consensus 467 ~~~A~~~l~~~i~~~p~~~~~y~~~~~~----~~~~~A~~~l~~a~~ldP~~~~----a~~~~-a~~~~~~~~~~~A~~~ 537 (855)
..+|.-.+.++|+..|.+-.++.+++.+ |....|+..+.++..++|.... ....+ +..+...++-+.|++.
T Consensus 223 i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 223 INQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 8888888888887777774444433322 3335666666666666662221 11222 3445555555666666
Q ss_pred HHHHHccCC---CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHH----HHHHHhhccChhhhH
Q 003035 538 IDRIIVFKL---SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVK----LLNHHVRSWSPADCW 610 (855)
Q Consensus 538 ~~k~l~~~p---~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~----ll~~~~~~~~~a~~~ 610 (855)
+..++...- +.+.+...+.++.+...++.|+..+...-......-... .....-.. .+........-.-..
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e--~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSE--WDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhh--hhhhhhccccccccccCCCCCCccchh
Confidence 666665222 234455556666666666666655443332110000000 00000000 000000000000000
Q ss_pred HHHhhhcccccccchHHHH-HHHHHcC--C-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHH
Q 003035 611 IKLYDRWSSVDDIGSLAVI-NQMLIND--P-GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS-EHERLVYEGWILY 685 (855)
Q Consensus 611 ~~~~~~~~~~~d~~al~~~-~~~l~~~--p-~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~-~~~~~~~lg~~~~ 685 (855)
..+--..-..++....+.+ +...+.+ | +++.+++..+..+++.|++.+|+.+|..++...+. +...|+.+|.+|.
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 0000000011111222222 2333333 3 45678888999999999999999999998887764 4567889999999
Q ss_pred HCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCC------CCCCHH-HHHHHHHHH
Q 003035 686 DTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPS------DGLRKG-QALNNLGSI 757 (855)
Q Consensus 686 ~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~------~~~~p~-~a~~~LG~~ 757 (855)
.+|.+++|+..|++++...|++ ++...++.++..+|+.++|.+. +++.. .+. ....|. ........+
T Consensus 461 ~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEt----L~~~~-~~D~~~~e~~a~~~e~ri~~~r~d~ 535 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALET----LEQII-NPDGRNAEACAWEPERRILAHRCDI 535 (895)
T ss_pred HHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHH----Hhccc-CCCccchhhccccHHHHHHHHHHHH
Confidence 9999999999999999999999 9999999999999999999998 77765 111 111223 667778888
Q ss_pred HHHcCCHHH
Q 003035 758 YVECGKLDQ 766 (855)
Q Consensus 758 y~~~g~~~~ 766 (855)
+.+.|+.++
T Consensus 536 l~~~gk~E~ 544 (895)
T KOG2076|consen 536 LFQVGKREE 544 (895)
T ss_pred HHHhhhHHH
Confidence 899998887
No 65
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.67 E-value=1.3e-12 Score=161.96 Aligned_cols=376 Identities=13% Similarity=0.065 Sum_probs=287.5
Q ss_pred hhHhhhhcHHHHHHHHHHHHHhcch----hhhhhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHH----hhccCcc
Q 003035 427 CVMFEREEYKDACYYFEAAADAGHI----YSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQER----SLYNLGR 498 (855)
Q Consensus 427 ~~~l~~g~~~eA~~~~~~Al~~~~~----~a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~----~~~~~~~ 498 (855)
..+.+.|++++|.+.|++..+.+.. ..+..+...+...|...+|...+..... |+ ...|... ...+..+
T Consensus 378 ~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--pd-~~Tyn~LL~a~~k~g~~e 454 (1060)
T PLN03218 378 NRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--PT-LSTFNMLMSVCASSQDID 454 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--CC-HHHHHHHHHHHHhCcCHH
Confidence 4456789999999999998765422 1233445667788999999887766543 43 3333221 1224557
Q ss_pred hHHHHHHHHHHhCCC-CchhHHHHHHHHHHhCCHHHHHHHHHHHHcc--CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003035 499 EKIVDLNYASELDPT-LSFPYKYRAVAKMEEGQIRAAISEIDRIIVF--KLSVDCLELRAWLFIAADDYESALRDTLALL 575 (855)
Q Consensus 499 ~A~~~l~~a~~ldP~-~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~--~p~~~~l~lra~~y~~~gd~~~A~~~~~~aL 575 (855)
+|...+.++.+.... +...|..+...|.+.|++++|...|+++.+. .|+...+..+...|.+.|++++|++.|+...
T Consensus 455 ~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~ 534 (1060)
T PLN03218 455 GALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR 534 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 899999988876543 4567778888999999999999999999864 5677777777889999999999999999986
Q ss_pred hc--CCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHc----CCCChHHHHHHHHH
Q 003035 576 AL--ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIN----DPGKSFLRFRQSLL 649 (855)
Q Consensus 576 ~~--~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~----~p~~~~~~~~~a~~ 649 (855)
.. .|+...+. .++.... +.+..+ .+..++..+... .| +...+..+-..
T Consensus 535 ~~Gv~PD~vTYn---------sLI~a~~--------------k~G~~d--eA~~lf~eM~~~~~gi~P-D~vTynaLI~a 588 (1060)
T PLN03218 535 SKNVKPDRVVFN---------ALISACG--------------QSGAVD--RAFDVLAEMKAETHPIDP-DHITVGALMKA 588 (1060)
T ss_pred HcCCCCCHHHHH---------HHHHHHH--------------HCCCHH--HHHHHHHHHHHhcCCCCC-cHHHHHHHHHH
Confidence 53 45532211 1111111 111111 134555666542 23 45677777778
Q ss_pred HHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--cCChHHHHHHHHHHHHCCCCchh
Q 003035 650 LLRLNCQKAAMRCLRLARNHS-SSEHERLVYEGWILYDTGHREEALSRAEKSISI--ERTFEAFFLKAYILADTNLDPES 726 (855)
Q Consensus 650 l~~~g~~~~A~~~l~~al~~~-p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~--~p~~~a~~~lg~~~~~~g~~~~A 726 (855)
+.+.|++++|.+.|+.+.+.+ +.+...|..+...|.+.|++++|+..|++..+. .|+...|..+...|.+.|++++|
T Consensus 589 y~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA 668 (1060)
T PLN03218 589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA 668 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 999999999999999999886 557788999999999999999999999999876 56668888999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHcCCHHHHHHH
Q 003035 727 STYVIQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDIK---HTRAHQGLARVYYLKNELKAAYDE 802 (855)
Q Consensus 727 ~~~~~~lle~al~~~~~~~~p~-~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~---~~~a~~~lg~~~~~~g~~~~A~~~ 802 (855)
.+. ++++.+ ....|+ ..|+.+...|.+.|++++|.+.|++..+.. +...|..+...|.+.|++++|++.
T Consensus 669 ~~l----~~eM~k---~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlel 741 (1060)
T PLN03218 669 FEI----LQDARK---QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEV 741 (1060)
T ss_pred HHH----HHHHHH---cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999 998882 234556 899999999999999999999999988765 888999999999999999999999
Q ss_pred HHHHHHH--ccCCHHHHHHHhh----cCCHHHHHHHHHHHHhc
Q 003035 803 MTKLLEK--AQYSASAFEKRSE----YSDREMAKNDLNMATQL 839 (855)
Q Consensus 803 ~~kal~~--~p~~~~a~~~lg~----~g~~eeA~~~~~kAl~l 839 (855)
|++..+. .|+. ..|..+-. .|++++|+..+.+..+.
T Consensus 742 f~eM~~~Gi~Pd~-~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 742 LSEMKRLGLCPNT-ITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHHHcCCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 9988764 4653 34444434 89999999999998875
No 66
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.67 E-value=8.7e-16 Score=169.43 Aligned_cols=196 Identities=16% Similarity=0.175 Sum_probs=174.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCC
Q 003035 643 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTN 721 (855)
Q Consensus 643 ~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g 721 (855)
-|..|..+++.|+..+|.-.|+.+++.+|.+.++|..||.++...++-..|+..++++++++|++ +++..||..|.+.|
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 46788999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCchhHHHHHHHHHHHhcCC-----------CC-------------------------CCCH---H-HHHHHHHHHHHHc
Q 003035 722 LDPESSTYVIQLLEEALRCP-----------SD-------------------------GLRK---G-QALNNLGSIYVEC 761 (855)
Q Consensus 722 ~~~~A~~~~~~lle~al~~~-----------~~-------------------------~~~p---~-~a~~~LG~~y~~~ 761 (855)
.-.+|... |.+-|+.- .. ...| + ++...||.+|.-.
T Consensus 368 ~q~~Al~~----L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 368 LQNQALKM----LDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred hHHHHHHH----HHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence 88888888 66654321 00 0111 1 6777899999999
Q ss_pred CCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh----cCCHHHHHHHHHH
Q 003035 762 GKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNM 835 (855)
Q Consensus 762 g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~----~g~~eeA~~~~~k 835 (855)
|++++|++||+.||..+ |...|+.||-.+..-.+..+|+..|++|+++.|.+..+.+++|. .|.|++|.++|-.
T Consensus 444 ~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 99999999999999999 99999999999999899999999999999999999999999999 9999999999999
Q ss_pred HHhcCCC
Q 003035 836 ATQLDPL 842 (855)
Q Consensus 836 Al~l~P~ 842 (855)
||.+.+.
T Consensus 524 AL~mq~k 530 (579)
T KOG1125|consen 524 ALSMQRK 530 (579)
T ss_pred HHHhhhc
Confidence 9999876
No 67
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=9.8e-14 Score=146.84 Aligned_cols=386 Identities=13% Similarity=0.018 Sum_probs=275.5
Q ss_pred hhhHhhhhcHHHHHHHHHHHHHhc-chhhhhhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHhhccC-cchHHHH
Q 003035 426 GCVMFEREEYKDACYYFEAAADAG-HIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNL-GREKIVD 503 (855)
Q Consensus 426 G~~~l~~g~~~eA~~~~~~Al~~~-~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~~~~-~~~A~~~ 503 (855)
+..|-..|+-+.|+....+..... ....-..+++.+.+-++...+.-.+..++..-|-...........+. +-+--..
T Consensus 104 aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~ 183 (564)
T KOG1174|consen 104 AECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSL 183 (564)
T ss_pred HHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhh
Confidence 344444455555555443332211 12334667777777777777777777777666632211111111100 1111111
Q ss_pred HHHHHHhCCCCchhHHHH-HHHHHHhCCHHHHHHH--HHHHHccCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 003035 504 LNYASELDPTLSFPYKYR-AVAKMEEGQIRAAISE--IDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALES 579 (855)
Q Consensus 504 l~~a~~ldP~~~~a~~~~-a~~~~~~~~~~~A~~~--~~k~l~~~p-~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P 579 (855)
--.++..+|.+...+..+ +...+-.++...|... +-.....-| +...+...|.++...||+++|+..|+++..+||
T Consensus 184 ~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dp 263 (564)
T KOG1174|consen 184 VMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANP 263 (564)
T ss_pred hhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCCh
Confidence 223456677777765543 3444555555555443 333333334 456667789999999999999999999999999
Q ss_pred chhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHH
Q 003035 580 NYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAA 659 (855)
Q Consensus 580 ~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A 659 (855)
...... + ....+...-+.++.. -.....++..+......||-.+..+...+++..|
T Consensus 264 y~i~~M-----D-~Ya~LL~~eg~~e~~------------------~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rA 319 (564)
T KOG1174|consen 264 DNVEAM-----D-LYAVLLGQEGGCEQD------------------SALMDYLFAKVKYTASHWFVHAQLLYDEKKFERA 319 (564)
T ss_pred hhhhhH-----H-HHHHHHHhccCHhhH------------------HHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHH
Confidence 864311 1 111111111111111 1233445555556667788888889999999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHh
Q 003035 660 MRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEAL 738 (855)
Q Consensus 660 ~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al 738 (855)
+.+-+++++.+|.+.+++...|.++...|+.++|+-.|+.|..+.|.. +.|-.+-..|...|.+.+|.-. -+.++
T Consensus 320 L~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~----An~~~ 395 (564)
T KOG1174|consen 320 LNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANAL----ANWTI 395 (564)
T ss_pred HHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHH----HHHHH
Confidence 999999999999999999999999999999999999999999999999 9999999999999999999998 77777
Q ss_pred cCCCCCCCHH--HHHHHHH-HHHHH-cCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccC
Q 003035 739 RCPSDGLRKG--QALNNLG-SIYVE-CGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQY 812 (855)
Q Consensus 739 ~~~~~~~~p~--~a~~~LG-~~y~~-~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~ 812 (855)
+.-|. .++..+| .++.. ----++|.+.++++|.++ ...+-..++..+...|.+++++..+++.+...||
T Consensus 396 -----~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D 470 (564)
T KOG1174|consen 396 -----RLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD 470 (564)
T ss_pred -----HHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc
Confidence 55555 6777776 44433 234689999999999999 8889999999999999999999999999999886
Q ss_pred CHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCCcc
Q 003035 813 SASAFEKRSE----YSDREMAKNDLNMATQLDPLRTY 845 (855)
Q Consensus 813 ~~~a~~~lg~----~g~~eeA~~~~~kAl~l~P~~~~ 845 (855)
...+.+||. .+.+.+|...|.+|+.+||.+--
T Consensus 471 -~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 471 -VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred -cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 678999999 89999999999999999998753
No 68
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=4.3e-15 Score=157.55 Aligned_cols=268 Identities=14% Similarity=0.124 Sum_probs=214.8
Q ss_pred chHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCCCH-hHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003035 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV-DCLELRAWLFIAADDYESALRDTLALLA 576 (855)
Q Consensus 498 ~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~~-~~l~lra~~y~~~gd~~~A~~~~~~aL~ 576 (855)
.+|+..|..||++.|++...|.+||..++..++++.|....++.+.++|.. ....-.+.++.++++..+|.+.++ .
T Consensus 66 ~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~---~ 142 (486)
T KOG0550|consen 66 GNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLK---S 142 (486)
T ss_pred HHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhh---h
Confidence 567777888888888888888889999999999999999999999988853 333344778888888888777666 1
Q ss_pred cCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcC---CCChHHHHHHHHHHHHc
Q 003035 577 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIND---PGKSFLRFRQSLLLLRL 653 (855)
Q Consensus 577 ~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~---p~~~~~~~~~a~~l~~~ 653 (855)
.+|. ..+.. +..+...+..+ |.=....+..+.++.-+
T Consensus 143 ~~~~-------~~ana---------------------------------l~~~~~~~~s~s~~pac~~a~~lka~cl~~~ 182 (486)
T KOG0550|consen 143 KQAY-------KAANA---------------------------------LPTLEKLAPSHSREPACFKAKLLKAECLAFL 182 (486)
T ss_pred hhhh-------HHhhh---------------------------------hhhhhcccccccCCchhhHHHHhhhhhhhhc
Confidence 1110 00000 11111111111 33344556778899999
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-------------HHHHHHHHHHHHC
Q 003035 654 NCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-------------EAFFLKAYILADT 720 (855)
Q Consensus 654 g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-------------~a~~~lg~~~~~~ 720 (855)
|++++|...--..+++++.+.++++..|.+++..++.+.|+.+|++++.++|+. ..+-..|.-.++.
T Consensus 183 ~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~ 262 (486)
T KOG0550|consen 183 GDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKN 262 (486)
T ss_pred ccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhc
Confidence 999999999999999999999999999999999999999999999999999985 3345678889999
Q ss_pred CCCchhHHHHHHHHHHHhcCCCCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHH
Q 003035 721 NLDPESSTYVIQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELK 797 (855)
Q Consensus 721 g~~~~A~~~~~~lle~al~~~~~~~~p~-~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~ 797 (855)
|++.+|.+. |..+|....+...+. ..|.|++.+...+|+..+|+...+.|++++ ...++...|.++...++++
T Consensus 263 G~y~~A~E~----Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e 338 (486)
T KOG0550|consen 263 GNYRKAYEC----YTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWE 338 (486)
T ss_pred cchhHHHHH----HHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 999993333333333 889999999999999999999999999999 8899999999999999999
Q ss_pred HHHHHHHHHHHHccC
Q 003035 798 AAYDEMTKLLEKAQY 812 (855)
Q Consensus 798 ~A~~~~~kal~~~p~ 812 (855)
+|++.|+++++...+
T Consensus 339 ~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 339 EAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHhhccc
Confidence 999999999998766
No 69
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.66 E-value=8.9e-15 Score=161.53 Aligned_cols=248 Identities=14% Similarity=0.111 Sum_probs=194.0
Q ss_pred cchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003035 497 GREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALL 575 (855)
Q Consensus 497 ~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p-~~~~l~lra~~y~~~gd~~~A~~~~~~aL 575 (855)
..+|.-.|+.|++.||.+..+|.++|.+..+.++-..||..+.++++++| +.+++..+|..|...|.-.+|+..+.+-+
T Consensus 301 L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi 380 (579)
T KOG1125|consen 301 LSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWI 380 (579)
T ss_pred chHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 36777788889999999999999999999999999999999999999999 46788888889999999999999999999
Q ss_pred hcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccc----hHHHHHHHHHcCC--CChHHHHHHHHH
Q 003035 576 ALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG----SLAVINQMLINDP--GKSFLRFRQSLL 649 (855)
Q Consensus 576 ~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~----al~~~~~~l~~~p--~~~~~~~~~a~~ 649 (855)
...|.+...... ... +.... .++..+.. -...+..+....| .++.++.-+|.+
T Consensus 381 ~~~p~y~~l~~a--~~~---------~~~~~----------~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVL 439 (579)
T KOG1125|consen 381 RNKPKYVHLVSA--GEN---------EDFEN----------TKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVL 439 (579)
T ss_pred HhCccchhcccc--Ccc---------ccccC----------CcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHH
Confidence 888876421100 000 00000 00111110 1234556666777 789999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHH
Q 003035 650 LLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESST 728 (855)
Q Consensus 650 l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~ 728 (855)
|.-.|+++.|+.+|+.||..+|++...|..||-++....+.++|+..|.+|+++.|.+ .+++++|+.+.++|.|.+|++
T Consensus 440 y~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 440 YNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred HhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCH-------HHHHHHHHHHHHHcCCHHHHHH
Q 003035 729 YVIQLLEEALRCPSDGLRK-------GQALNNLGSIYVECGKLDQAEN 769 (855)
Q Consensus 729 ~~~~lle~al~~~~~~~~p-------~~a~~~LG~~y~~~g~~~~A~~ 769 (855)
+ |-.||........+ +.+|..|=.++..+++.|.+.+
T Consensus 520 h----lL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 520 H----LLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred H----HHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 9 88888433221111 1466666666666666664433
No 70
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.66 E-value=1.3e-16 Score=146.98 Aligned_cols=103 Identities=29% Similarity=0.374 Sum_probs=92.1
Q ss_pred cCCCCCCcEEEEEc-CeEEEeeehhhhcCCHHHHHhhcCC-CccCCCCeeEecCCCCCHHHHHHHHHHhccCCCCCCC-H
Q 003035 212 LSLEEDDSVTFCVR-DKEISFVRNKIASLSSPFKAMLYGG-FVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFC-P 288 (855)
Q Consensus 212 ~~~~~~~~V~f~v~-~~~~~aHr~vLaa~S~~F~~mf~~~-~~E~~~~~I~l~~~~is~~~~~~ll~y~YTg~l~~~~-~ 288 (855)
.+++...||+|.|+ +++|+|||.||+++|+||+.||.++ +.+....+|.+ +++++++|..+++|+|||.+. ++ .
T Consensus 5 ~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~l~~~Y~~~~~-~~~~ 81 (111)
T PF00651_consen 5 FNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISL--PDVSPEAFEAFLEYMYTGEIE-INSD 81 (111)
T ss_dssp HHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEE--TTSCHHHHHHHHHHHHHSEEE-EE-T
T ss_pred HcCCCCCCEEEEECCCEEEeechhhhhccchhhhhccccccccccccccccc--ccccccccccccccccCCccc-CCHH
Confidence 34556677999999 8999999999999999999999998 67777678999 999999999999999999999 87 9
Q ss_pred HHHHHHHHHhchhChHHHHHHHHHHHHhh
Q 003035 289 GIVLELLSFANRFCCEEMKSACDAHLASL 317 (855)
Q Consensus 289 ~~~~~ll~~A~~~~~~~Lk~~C~~~l~~~ 317 (855)
+++.+++.+|++|+++.|++.|+++|.+.
T Consensus 82 ~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 82 ENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp TTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 99999999999999999999999999864
No 71
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.65 E-value=4.5e-14 Score=145.99 Aligned_cols=197 Identities=16% Similarity=0.093 Sum_probs=164.9
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHH
Q 003035 548 VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLA 627 (855)
Q Consensus 548 ~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~ 627 (855)
...+..+|..+...|++++|+..+++++..+|+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~----------------------------------------------- 63 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPD----------------------------------------------- 63 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-----------------------------------------------
Confidence 455666788888888888888887777765544
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc--C
Q 003035 628 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE--R 705 (855)
Q Consensus 628 ~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~--p 705 (855)
+...+..+|.++..+|++++|++.++++++..|+++..++.+|.++..+|++++|+..++++++.. +
T Consensus 64 -----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 132 (234)
T TIGR02521 64 -----------DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYP 132 (234)
T ss_pred -----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 233455677888889999999999999999999999999999999999999999999999999864 3
Q ss_pred Ch-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cH
Q 003035 706 TF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HT 780 (855)
Q Consensus 706 ~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~ 780 (855)
.. ..+..+|.++...|++++|... +++++ ...|+ .++..+|.++...|++++|...++++++.. ++
T Consensus 133 ~~~~~~~~l~~~~~~~g~~~~A~~~----~~~~~-----~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 203 (234)
T TIGR02521 133 QPARSLENAGLCALKAGDFDKAEKY----LTRAL-----QIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTA 203 (234)
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHH----HHHHH-----HhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 33 7888899999999999999999 99999 66666 788899999999999999999999999886 77
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Q 003035 781 RAHQGLARVYYLKNELKAAYDEMTKLLEKAQ 811 (855)
Q Consensus 781 ~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p 811 (855)
..+..++.++...|+.++|....+.+.+..|
T Consensus 204 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 204 ESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 7888889999999999999988887766543
No 72
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.64 E-value=2.4e-13 Score=154.16 Aligned_cols=287 Identities=10% Similarity=-0.025 Sum_probs=205.1
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHccCCCHhHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHH
Q 003035 519 KYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELR-AWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLL 597 (855)
Q Consensus 519 ~~~a~~~~~~~~~~~A~~~~~k~l~~~p~~~~l~lr-a~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll 597 (855)
+..|...+..|++++|.....+.-+..+.+...++. +.+....|+++.|...+.++.+.+|++.....- ....+
T Consensus 88 ~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l-----~~a~l 162 (398)
T PRK10747 88 TEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEI-----TRVRI 162 (398)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHH-----HHHHH
Confidence 345667777888888887777765544445554544 445588888888888888888888875321100 00001
Q ss_pred HHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 003035 598 NHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERL 677 (855)
Q Consensus 598 ~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~ 677 (855)
....+ +...++..+.+..+.+|+++.++..++.++.+.|++++|++.+.++.+..+.+++..
T Consensus 163 ~l~~g------------------~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~ 224 (398)
T PRK10747 163 QLARN------------------ENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHR 224 (398)
T ss_pred HHHCC------------------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHH
Confidence 11111 122356677788888899988888899999999999999999999888776654432
Q ss_pred H--------HHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH
Q 003035 678 V--------YEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG 748 (855)
Q Consensus 678 ~--------~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~ 748 (855)
. .+........+.+...+..++..+..|++ .+...+|..+...|+.++|... +++++ +..++
T Consensus 225 ~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~----L~~~l-----~~~~~ 295 (398)
T PRK10747 225 AMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQI----ILDGL-----KRQYD 295 (398)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHH----HHHHH-----hcCCC
Confidence 2 11111222333444445455544555667 8999999999999999999999 99999 54443
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh---
Q 003035 749 -QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE--- 822 (855)
Q Consensus 749 -~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~--- 822 (855)
......|.+ ..++.+++++..++.++.+ ++..+..+|+++...|++++|.++|+++++..|++.. +..++.
T Consensus 296 ~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~ 372 (398)
T PRK10747 296 ERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALD 372 (398)
T ss_pred HHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHH
Confidence 333333333 3489999999999999988 8899999999999999999999999999999998766 234554
Q ss_pred -cCCHHHHHHHHHHHHhcC
Q 003035 823 -YSDREMAKNDLNMATQLD 840 (855)
Q Consensus 823 -~g~~eeA~~~~~kAl~l~ 840 (855)
.|+.++|..+|++++.+-
T Consensus 373 ~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 373 RLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HcCCHHHHHHHHHHHHhhh
Confidence 999999999999998864
No 73
>PLN02789 farnesyltranstransferase
Probab=99.64 E-value=2e-14 Score=156.43 Aligned_cols=217 Identities=15% Similarity=0.144 Sum_probs=159.8
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCH--HHHHHHHHHHHh
Q 003035 626 LAVINQMLINDPGKSFLRFRQSLLLLRLN-CQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHR--EEALSRAEKSIS 702 (855)
Q Consensus 626 l~~~~~~l~~~p~~~~~~~~~a~~l~~~g-~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~--~eAl~~~~kal~ 702 (855)
+....++++.+|.+..++..++.++..+| ++++++..++++++.+|++..+|+.+++++...|+. ++++..++++++
T Consensus 57 L~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~ 136 (320)
T PLN02789 57 LDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS 136 (320)
T ss_pred HHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH
Confidence 34444555556666666666666666666 467788888888888888888888888887777763 667777778888
Q ss_pred ccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHc---CCH----HHHHHHHH
Q 003035 703 IERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVEC---GKL----DQAENCYI 772 (855)
Q Consensus 703 ~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~---g~~----~~A~~~~~ 772 (855)
.+|++ .+|..+|.++...|+++++++. ++++| +.+|. .+|+++|.+.... |.+ ++++++..
T Consensus 137 ~dpkNy~AW~~R~w~l~~l~~~~eeL~~----~~~~I-----~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~ 207 (320)
T PLN02789 137 LDAKNYHAWSHRQWVLRTLGGWEDELEY----CHQLL-----EEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTI 207 (320)
T ss_pred hCcccHHHHHHHHHHHHHhhhHHHHHHH----HHHHH-----HHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHH
Confidence 88877 8888888888888888887777 78877 66665 7788888777665 222 46777777
Q ss_pred HHHhcc--cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHccCCHHHHHHHhh---cC-------------------
Q 003035 773 NALDIK--HTRAHQGLARVYYL----KNELKAAYDEMTKLLEKAQYSASAFEKRSE---YS------------------- 824 (855)
Q Consensus 773 kAL~~~--~~~a~~~lg~~~~~----~g~~~~A~~~~~kal~~~p~~~~a~~~lg~---~g------------------- 824 (855)
++|.++ |..+|+.++.++.. .++..+|++.+.+++..+|+++.++..|+. .|
T Consensus 208 ~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 287 (320)
T PLN02789 208 DAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELS 287 (320)
T ss_pred HHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccc
Confidence 888877 77888888888777 345566888888888878888888877777 11
Q ss_pred CHHHHHHHHHHHHhcCCCCcccchhhh
Q 003035 825 DREMAKNDLNMATQLDPLRTYPYRYRA 851 (855)
Q Consensus 825 ~~eeA~~~~~kAl~l~P~~~~~~~~~a 851 (855)
..++|.+.++..-+.||-+.-=|+||.
T Consensus 288 ~~~~a~~~~~~l~~~d~ir~~yw~~~~ 314 (320)
T PLN02789 288 DSTLAQAVCSELEVADPMRRNYWAWRK 314 (320)
T ss_pred cHHHHHHHHHHHHhhCcHHHHHHHHHH
Confidence 347799988888788998888777774
No 74
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.62 E-value=7.6e-15 Score=150.96 Aligned_cols=255 Identities=15% Similarity=0.034 Sum_probs=217.0
Q ss_pred HHHHhCCHHHHHHHHHHHHcc---CCCH-----hHH---HHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhH
Q 003035 524 AKMEEGQIRAAISEIDRIIVF---KLSV-----DCL---ELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDH 592 (855)
Q Consensus 524 ~~~~~~~~~~A~~~~~k~l~~---~p~~-----~~l---~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~ 592 (855)
++...++...|-......++. +|+. ..+ ..+|.+|+.+|-+.+|...++..|+..|-
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~------------ 255 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH------------ 255 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc------------
Confidence 445566666665444444432 3321 112 24589999999999999999988864432
Q ss_pred HHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 003035 593 LVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS 672 (855)
Q Consensus 593 l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~ 672 (855)
+..+..++.+|.+..++..|+..|.+.++..|.
T Consensus 256 -----------------------------------------------~dTfllLskvY~ridQP~~AL~~~~~gld~fP~ 288 (478)
T KOG1129|consen 256 -----------------------------------------------PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF 288 (478)
T ss_pred -----------------------------------------------hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc
Confidence 123445677888899999999999999999999
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--H
Q 003035 673 EHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--Q 749 (855)
Q Consensus 673 ~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~ 749 (855)
+...+...+.++..++++++|+++|+.+++.+|.+ ++.--+|.-|+..++.+-|+.+ |++.+ ...-. +
T Consensus 289 ~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Alry----YRRiL-----qmG~~spe 359 (478)
T KOG1129|consen 289 DVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRY----YRRIL-----QMGAQSPE 359 (478)
T ss_pred hhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHH----HHHHH-----HhcCCChH
Confidence 99999999999999999999999999999999999 9999999999999999999999 99999 43332 8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh--
Q 003035 750 ALNNLGSIYVECGKLDQAENCYINALDIK-----HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE-- 822 (855)
Q Consensus 750 a~~~LG~~y~~~g~~~~A~~~~~kAL~~~-----~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~-- 822 (855)
.+.|+|.|.+-.+++|-++.+|++|+... ...+|+|+|.+....||+.-|...|+-++..+|++..++++||.
T Consensus 360 Lf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~ 439 (478)
T KOG1129|consen 360 LFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLA 439 (478)
T ss_pred HHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHH
Confidence 99999999999999999999999999876 46799999999999999999999999999999999999999999
Q ss_pred --cCCHHHHHHHHHHHHhcCCCCccc
Q 003035 823 --YSDREMAKNDLNMATQLDPLRTYP 846 (855)
Q Consensus 823 --~g~~eeA~~~~~kAl~l~P~~~~~ 846 (855)
.|+.++|+.+++.|-.+.|+-..+
T Consensus 440 ~r~G~i~~Arsll~~A~s~~P~m~E~ 465 (478)
T KOG1129|consen 440 ARSGDILGARSLLNAAKSVMPDMAEV 465 (478)
T ss_pred hhcCchHHHHHHHHHhhhhCcccccc
Confidence 899999999999999999975443
No 75
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.62 E-value=6.3e-13 Score=150.93 Aligned_cols=382 Identities=15% Similarity=0.079 Sum_probs=258.3
Q ss_pred HHHHHHhhcccccchhhHHHHHHHHhhch--hhHHHHHHHHHHhhhh-HhhhhcHHHHHHHHHHHHHhc-------chhh
Q 003035 384 YYFLSQVAMEKDRVSNTTVMLLERLGECS--TERWQRMLALHQLGCV-MFEREEYKDACYYFEAAADAG-------HIYS 453 (855)
Q Consensus 384 ~~~La~~~~~~~~~~~~a~~~le~~~~~~--~~~~~~~~a~~~LG~~-~l~~g~~~eA~~~~~~Al~~~-------~~~a 453 (855)
++-++..++..+. .-.|+.++++.+... |+++. .+.....+ +-+-|.+++++++-++|++.. ...+
T Consensus 360 w~~~als~saag~-~s~Av~ll~~~~~~~~~ps~~s---~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~ 435 (799)
T KOG4162|consen 360 WYQLALSYSAAGS-DSKAVNLLRESLKKSEQPSDIS---VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRG 435 (799)
T ss_pred HHHHHHHHHHhcc-chHHHHHHHhhcccccCCCcch---HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhH
Confidence 4445555555665 668999999988876 44332 33333334 455789999999999999731 2234
Q ss_pred hhhHHHHHHHhC-----------ChHHHHHHHHhHHHcCCCchHHHHHHh----hccCcchHHHHHHHHHHhCC-CCchh
Q 003035 454 LAGLARAKYKVG-----------QQYSAYKLINSIISEHKPTGWMYQERS----LYNLGREKIVDLNYASELDP-TLSFP 517 (855)
Q Consensus 454 ~~~la~~~~~~g-----------~~~~A~~~l~~~i~~~p~~~~~y~~~~----~~~~~~~A~~~l~~a~~ldP-~~~~a 517 (855)
+..+|.+|-.+- ...++++.++++++.+|+|+......+ ....-..|+....++++++| +++.+
T Consensus 436 ~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~ 515 (799)
T KOG4162|consen 436 YLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKA 515 (799)
T ss_pred HHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHH
Confidence 555555544322 135678899999999998876432222 22344789999999999955 55778
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHccCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhh---cccchhHH
Q 003035 518 YKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFH---GRVSGDHL 593 (855)
Q Consensus 518 ~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~-~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~---~~~~~~~l 593 (855)
|..+|.++-.++++.+|+...+.++.--|+ ......+..+-...||.++|+..+...|.+=.+-.... .+.....+
T Consensus 516 whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~l 595 (799)
T KOG4162|consen 516 WHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRL 595 (799)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhh
Confidence 999999999999999999999999986663 44455666777789999999999988886532111000 00000111
Q ss_pred HHHHHHHhhccChhhhH----HHHh-hhcccccccchHHHHHHHHHcCCCC-----hHHHHHHHHHHHHcCCHHHHHHHH
Q 003035 594 VKLLNHHVRSWSPADCW----IKLY-DRWSSVDDIGSLAVINQMLINDPGK-----SFLRFRQSLLLLRLNCQKAAMRCL 663 (855)
Q Consensus 594 ~~ll~~~~~~~~~a~~~----~~~~-~~~~~~~d~~al~~~~~~l~~~p~~-----~~~~~~~a~~l~~~g~~~~A~~~l 663 (855)
...+.-...+...+..- ..+. .+.........+.. -.....|.. ...+...+..++..+..++|.-++
T Consensus 596 k~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~--s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL 673 (799)
T KOG4162|consen 596 KAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS--STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCL 673 (799)
T ss_pred hcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc--ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 11111111111111000 0000 00000000000000 000011111 235667788888999999999999
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCC
Q 003035 664 RLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPS 742 (855)
Q Consensus 664 ~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~ 742 (855)
.++-.++|..+..++..|..+...|++++|...|..|+.++|++ .+...+|.++...|+..-|... .++..++
T Consensus 674 ~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~--~~L~dal---- 747 (799)
T KOG4162|consen 674 LEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKR--SLLSDAL---- 747 (799)
T ss_pred HHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHH--HHHHHHH----
Confidence 99999999999999999999999999999999999999999999 9999999999999977776661 2288899
Q ss_pred CCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 003035 743 DGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK 778 (855)
Q Consensus 743 ~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~ 778 (855)
+++|. ++|+++|.++...|+.+.|.+||+.|++++
T Consensus 748 -r~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 748 -RLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred -hhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 88888 899999999999999999999999998887
No 76
>PLN02789 farnesyltranstransferase
Probab=99.61 E-value=1.6e-14 Score=157.14 Aligned_cols=195 Identities=9% Similarity=0.001 Sum_probs=174.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCC--c
Q 003035 649 LLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTG-HREEALSRAEKSISIERTF-EAFFLKAYILADTNLD--P 724 (855)
Q Consensus 649 ~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g-~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~--~ 724 (855)
++...+++++|+..+.++++++|++..+|.++|.++..+| ++++++..++++++.+|++ .+|+.++.++...|+. +
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence 3567889999999999999999999999999999999999 6899999999999999999 9999999999999874 5
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHc---CCH-
Q 003035 725 ESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLK---NEL- 796 (855)
Q Consensus 725 ~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~---g~~- 796 (855)
+++.. +++++ ..+|. .+|+++|.++...|++++|++++.++|+++ +..+++++|.++... |.+
T Consensus 126 ~el~~----~~kal-----~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 126 KELEF----TRKIL-----SLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred HHHHH----HHHHH-----HhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccc
Confidence 66777 99999 88888 999999999999999999999999999999 999999999998876 323
Q ss_pred ---HHHHHHHHHHHHHccCCHHHHHHHhh--------cCCHHHHHHHHHHHHhcCCCCcccchhhhc
Q 003035 797 ---KAAYDEMTKLLEKAQYSASAFEKRSE--------YSDREMAKNDLNMATQLDPLRTYPYRYRAA 852 (855)
Q Consensus 797 ---~~A~~~~~kal~~~p~~~~a~~~lg~--------~g~~eeA~~~~~kAl~l~P~~~~~~~~~a~ 852 (855)
++++++..++|+++|+|..+|+.++. .++..+|...+.+++..+|..+++.-+.+-
T Consensus 197 ~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d 263 (320)
T PLN02789 197 AMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLD 263 (320)
T ss_pred ccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHH
Confidence 57888889999999999999999888 245677999999999999998887766554
No 77
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.61 E-value=3.2e-13 Score=153.23 Aligned_cols=247 Identities=19% Similarity=0.166 Sum_probs=200.1
Q ss_pred HhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHcc--------CCCH-hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 003035 509 ELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVF--------KLSV-DCLELRAWLFIAADDYESALRDTLALLALES 579 (855)
Q Consensus 509 ~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~--------~p~~-~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P 579 (855)
..+|.......++|..|..+|+++.|+..++.++.+ -|.. ..+...|.+|..++++.+|+..|+++|++--
T Consensus 193 ~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 193 DEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred cCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 446776677778999999999999999999999986 3332 2334479999999999999999999997421
Q ss_pred chhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHH
Q 003035 580 NYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAA 659 (855)
Q Consensus 580 ~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A 659 (855)
+. .+ +.+|.-+..+..+|.+|.+.|++++|
T Consensus 273 ~~-------------------~G-------------------------------~~h~~va~~l~nLa~ly~~~GKf~EA 302 (508)
T KOG1840|consen 273 EV-------------------FG-------------------------------EDHPAVAATLNNLAVLYYKQGKFAEA 302 (508)
T ss_pred Hh-------------------cC-------------------------------CCCHHHHHHHHHHHHHHhccCChHHH
Confidence 10 00 12355566778899999999999999
Q ss_pred HHHHHHHHhcC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC--------Ch-HHHHHHHHHHHHCCC
Q 003035 660 MRCLRLARNHS--------SSEHERLVYEGWILYDTGHREEALSRAEKSISIER--------TF-EAFFLKAYILADTNL 722 (855)
Q Consensus 660 ~~~l~~al~~~--------p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p--------~~-~a~~~lg~~~~~~g~ 722 (855)
..+++.|+++. |.-+..+..++.++..++++++|+.++++++++.- .- ..+.++|.+|..+|+
T Consensus 303 ~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk 382 (508)
T KOG1840|consen 303 EEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGK 382 (508)
T ss_pred HHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcc
Confidence 99999998763 33455678899999999999999999999998742 22 678899999999999
Q ss_pred CchhHHHHHHHHHHHhcCCC---CCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc---------cHHHHHHHHH
Q 003035 723 DPESSTYVIQLLEEALRCPS---DGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK---------HTRAHQGLAR 788 (855)
Q Consensus 723 ~~~A~~~~~~lle~al~~~~---~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~---------~~~a~~~lg~ 788 (855)
+.+|.+. +++|+.... ....+. ..+++||..|.+.+++.+|.+.|..++.+. -...+.|||-
T Consensus 383 ~~ea~~~----~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~ 458 (508)
T KOG1840|consen 383 YKEAEEL----YKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAA 458 (508)
T ss_pred hhHHHHH----HHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Confidence 9999999 888884321 112222 789999999999999999999999998875 2457889999
Q ss_pred HHHHcCCHHHHHHHHHHHHHH
Q 003035 789 VYYLKNELKAAYDEMTKLLEK 809 (855)
Q Consensus 789 ~~~~~g~~~~A~~~~~kal~~ 809 (855)
+|..+|++++|+++-++++..
T Consensus 459 ~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 459 LYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHcccHHHHHHHHHHHHHH
Confidence 999999999999999998854
No 78
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.61 E-value=6.7e-13 Score=153.30 Aligned_cols=426 Identities=13% Similarity=0.048 Sum_probs=298.6
Q ss_pred hhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhcch--hhhhhHHHHHHHhCChHHHHHHHH
Q 003035 398 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHI--YSLAGLARAKYKVGQQYSAYKLIN 475 (855)
Q Consensus 398 ~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~~--~a~~~la~~~~~~g~~~~A~~~l~ 475 (855)
...+...|-++++.+++- +.++..||.+|..--+...|.+||++|-++++. .+....+..|....+.+.|.....
T Consensus 474 ~~~al~ali~alrld~~~---apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSL---APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred HHHHHHHHHHHHhcccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 678888999999998875 678999999999999999999999999988765 456788889999999999988866
Q ss_pred hHHHcCCCc--hHHHHHHhhc----cCcchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCCC-H
Q 003035 476 SIISEHKPT--GWMYQERSLY----NLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-V 548 (855)
Q Consensus 476 ~~i~~~p~~--~~~y~~~~~~----~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~-~ 548 (855)
.+-+..|.- .|.+..++.| .+...|+.++..|+..||.+...|..+|.+|...|++..|+..|+|+..++|. .
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 666665532 2333336554 33468999999999999999999999999999999999999999999999995 4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccc-------------------hhHHHH-------HH----H
Q 003035 549 DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS-------------------GDHLVK-------LL----N 598 (855)
Q Consensus 549 ~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~-------------------~~~l~~-------ll----~ 598 (855)
-..+..|.+...+|.|++|+..+..++............++ .+.+.. .+ .
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~ 710 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQ 710 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhh
Confidence 45566788899999999999999999876554432211111 111000 00 0
Q ss_pred HHhhccChhhhHHHHhhhcc--------------------cc--cccchHH----HHHHHHHcCCCChHHHHHHHHHHHH
Q 003035 599 HHVRSWSPADCWIKLYDRWS--------------------SV--DDIGSLA----VINQMLINDPGKSFLRFRQSLLLLR 652 (855)
Q Consensus 599 ~~~~~~~~a~~~~~~~~~~~--------------------~~--~d~~al~----~~~~~l~~~p~~~~~~~~~a~~l~~ 652 (855)
....+|..+...-..+-... .. +|+..+. ..+.-+.. .+..|+.+|.-+++
T Consensus 711 ~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~---~~~~WyNLGinylr 787 (1238)
T KOG1127|consen 711 SDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAI---HMYPWYNLGINYLR 787 (1238)
T ss_pred hhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhh---ccchHHHHhHHHHH
Confidence 00111111100000000000 00 0000000 01111111 13445666655554
Q ss_pred --------cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCC
Q 003035 653 --------LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLD 723 (855)
Q Consensus 653 --------~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~ 723 (855)
+.+-..|+.++.+++++..++...|..||.+ ...|++.-|...|-+++..+|.. ..|+++|.++....++
T Consensus 788 ~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~ 866 (1238)
T KOG1127|consen 788 YFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDF 866 (1238)
T ss_pred HHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccH
Confidence 2223478999999999999999999999988 55688999999999999999998 9999999999999999
Q ss_pred chhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHH--HHhcc-----cHHHHHHHHHHHHHcC
Q 003035 724 PESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYIN--ALDIK-----HTRAHQGLARVYYLKN 794 (855)
Q Consensus 724 ~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~k--AL~~~-----~~~a~~~lg~~~~~~g 794 (855)
+-|... |.++. .++|. ..|...+.+....|+.-++...|.- .+... ...-+.+--..+..+|
T Consensus 867 E~A~~a----f~~~q-----SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng 937 (1238)
T KOG1127|consen 867 EHAEPA----FSSVQ-----SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNG 937 (1238)
T ss_pred HHhhHH----HHhhh-----hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhcc
Confidence 999999 99998 88888 7777777888888888888888877 33333 2223333344555566
Q ss_pred CHHHHHHHHHH----------HHHHccCCHHHHHHHhh----cCCHHHHHHHHHHHHhc
Q 003035 795 ELKAAYDEMTK----------LLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQL 839 (855)
Q Consensus 795 ~~~~A~~~~~k----------al~~~p~~~~a~~~lg~----~g~~eeA~~~~~kAl~l 839 (855)
++++-+...++ -+...|++..+|...|. ++.++.|.+.+.+.+.+
T Consensus 938 ~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rligl 996 (1238)
T KOG1127|consen 938 NIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGL 996 (1238)
T ss_pred chHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 66655554443 34557888888888888 67777777777665543
No 79
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2.5e-14 Score=151.80 Aligned_cols=284 Identities=20% Similarity=0.181 Sum_probs=221.4
Q ss_pred CcchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003035 496 LGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLAL 574 (855)
Q Consensus 496 ~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~-~~~l~lra~~y~~~gd~~~A~~~~~~a 574 (855)
..+++..+-+++.++.| .+..+++|.+|+..|..+|+..|+ ...+..|+..+...|+|++|.-+.++.
T Consensus 41 ~~~~~~~~Ae~~k~~gn-----------~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~ 109 (486)
T KOG0550|consen 41 FSQEAAQQAEEAKEEGN-----------AFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQS 109 (486)
T ss_pred ccchHHHHHHHHHhhcc-----------hHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhh
Confidence 33555555566655544 567889999999999999999995 556778999999999999999999999
Q ss_pred HhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcC
Q 003035 575 LALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLN 654 (855)
Q Consensus 575 L~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g 654 (855)
+.++|.......+.+-.... +. . +......++ +... +
T Consensus 110 ~r~kd~~~k~~~r~~~c~~a--~~----~----------------------~i~A~~~~~----~~~~-----------~ 146 (486)
T KOG0550|consen 110 VRLKDGFSKGQLREGQCHLA--LS----D----------------------LIEAEEKLK----SKQA-----------Y 146 (486)
T ss_pred eecCCCccccccchhhhhhh--hH----H----------------------HHHHHHHhh----hhhh-----------h
Confidence 99999876543332211100 00 0 000011111 0000 0
Q ss_pred CHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHH
Q 003035 655 CQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYV 730 (855)
Q Consensus 655 ~~~~A~~~l~~al~~~p~~---~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~ 730 (855)
....|+..+++.+..+... ..+-..-+.++...|++++|+..--..+++++.+ ++++..|.+++..++.+.|+..
T Consensus 147 ~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~h- 225 (486)
T KOG0550|consen 147 KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINH- 225 (486)
T ss_pred HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHH-
Confidence 2233444444444433322 3344567889999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCHH--------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc------cHHHHHHHHHHH
Q 003035 731 IQLLEEALRCPSDGLRKG--------------QALNNLGSIYVECGKLDQAENCYINALDIK------HTRAHQGLARVY 790 (855)
Q Consensus 731 ~~lle~al~~~~~~~~p~--------------~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~------~~~a~~~lg~~~ 790 (855)
|++++ .++|+ ..+-.-|.-..+.|++.+|.++|..||.++ +...|.++|.+.
T Consensus 226 ---f~qal-----~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~ 297 (486)
T KOG0550|consen 226 ---FQQAL-----RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVN 297 (486)
T ss_pred ---Hhhhh-----ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhh
Confidence 99999 77665 566667899999999999999999999998 567799999999
Q ss_pred HHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh----cCCHHHHHHHHHHHHhcCCC
Q 003035 791 YLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLDPL 842 (855)
Q Consensus 791 ~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~----~g~~eeA~~~~~kAl~l~P~ 842 (855)
.++|+..+|+...+.+++++|....+|..+|. ++++++|+++|++|+++..+
T Consensus 298 ~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 298 IRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred cccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999 99999999999999998655
No 80
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.59 E-value=4.4e-15 Score=130.32 Aligned_cols=90 Identities=32% Similarity=0.429 Sum_probs=85.7
Q ss_pred cEEEEEcCeEEEeeehhhhcCCHHHHHhhcCCCccCCCCeeEecCCCCCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHh
Q 003035 219 SVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLELLSFA 298 (855)
Q Consensus 219 ~V~f~v~~~~~~aHr~vLaa~S~~F~~mf~~~~~E~~~~~I~l~~~~is~~~~~~ll~y~YTg~l~~~~~~~~~~ll~~A 298 (855)
||+|.|+|+.|++||.+|+++|+||+.||.+++.++....|.+ +++++.+|+.+++|+||+++. ++.+++.+++.+|
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l--~~~~~~~f~~~l~~ly~~~~~-~~~~~~~~l~~~a 77 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYL--DDVSPEDFRALLEFLYTGKLD-LPEENVEELLELA 77 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEe--cCCCHHHHHHHHHeecCceee-cCHHHHHHHHHHH
Confidence 3789999999999999999999999999999999888889999 899999999999999999999 8889999999999
Q ss_pred chhChHHHHHHHH
Q 003035 299 NRFCCEEMKSACD 311 (855)
Q Consensus 299 ~~~~~~~Lk~~C~ 311 (855)
++|+++.|++.|+
T Consensus 78 ~~~~~~~l~~~c~ 90 (90)
T smart00225 78 DYLQIPGLVELCE 90 (90)
T ss_pred HHHCcHHHHhhhC
Confidence 9999999999995
No 81
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.58 E-value=2.1e-15 Score=169.62 Aligned_cols=140 Identities=19% Similarity=0.276 Sum_probs=121.9
Q ss_pred CCCcEEEEE-cCeEEEeeehhhhcCCHHHHHhhcCCCccCCCCeeEecCCCCCHHHHHHHHHHhc-cCCCCC----CCHH
Q 003035 216 EDDSVTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTR-TSRVDL----FCPG 289 (855)
Q Consensus 216 ~~~~V~f~v-~~~~~~aHr~vLaa~S~~F~~mf~~~~~E~~~~~I~l~~~~is~~~~~~ll~y~Y-Tg~l~~----~~~~ 289 (855)
+..++.++. +|+.++||||+|++|++||..||..-|.|++.-.+.. -.+..+.|..+|+|+| ++++.. -..+
T Consensus 709 e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~--~p~~~e~m~ivLdylYs~d~~~~~k~~~~~d 786 (1267)
T KOG0783|consen 709 ETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNL--SPLTVEHMSIVLDYLYSDDKVELFKDLKESD 786 (1267)
T ss_pred cceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeec--CcchHHHHHHHHHHHHccchHHHHhccchhh
Confidence 344444443 8899999999999999999999999999998755555 5667999999999999 555543 3457
Q ss_pred HHHHHHHHhchhChHHHHHHHHHHHHhhcCChhhHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhcCCh
Q 003035 290 IVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNP 358 (855)
Q Consensus 290 ~~~~ll~~A~~~~~~~Lk~~C~~~l~~~l~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~v~~~~ 358 (855)
.+.++|..||.|.+.+||..|+..|...++ ..||-+++++|..|++++|...|++||..|+..++.-.
T Consensus 787 F~~~il~iaDqlli~~Lk~Ice~~ll~kl~-lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~Lear 854 (1267)
T KOG0783|consen 787 FMFEILSIADQLLILELKSICEQSLLRKLN-LKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFLEAR 854 (1267)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHhc-ccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHhc
Confidence 789999999999999999999999999999 99999999999999999999999999999999887543
No 82
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.58 E-value=2e-12 Score=144.52 Aligned_cols=300 Identities=13% Similarity=-0.026 Sum_probs=215.2
Q ss_pred CCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCC-C---HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhc
Q 003035 511 DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-S---VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHG 586 (855)
Q Consensus 511 dP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p-~---~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~ 586 (855)
||+...+|..+|..+...|+.+.|...+.++....| + .+...+++.++...|++++|.+.+++++..+|++.....
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 899999999999999999999999999999887655 2 356778899999999999999999999999998753211
Q ss_pred ccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003035 587 RVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLA 666 (855)
Q Consensus 587 ~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~a 666 (855)
. . ........... ..+ .....+......+|.....+...|.++..+|++++|++.++++
T Consensus 82 ~--~-----~~~~~~~~~~~------------~~~--~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 140 (355)
T cd05804 82 L--H-----LGAFGLGDFSG------------MRD--HVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRA 140 (355)
T ss_pred H--h-----HHHHHhccccc------------Cch--hHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 0 00000000000 000 0112222234566778888888999999999999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-----HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCC
Q 003035 667 RNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-----EAFFLKAYILADTNLDPESSTYVIQLLEEALRCP 741 (855)
Q Consensus 667 l~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-----~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~ 741 (855)
++.+|+++.++..+|.+++..|++++|+..+++++...|.. ..+..+|.++...|++++|+.. |++++
T Consensus 141 l~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~----~~~~~--- 213 (355)
T cd05804 141 LELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI----YDTHI--- 213 (355)
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH----HHHHh---
Confidence 99999999999999999999999999999999999987633 4567899999999999999999 99998
Q ss_pred CCCCCHH-----HHHH--HHHHHHHHcCCHHHHHHH--H-HHHHhc---c-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003035 742 SDGLRKG-----QALN--NLGSIYVECGKLDQAENC--Y-INALDI---K-HTRAHQGLARVYYLKNELKAAYDEMTKLL 807 (855)
Q Consensus 742 ~~~~~p~-----~a~~--~LG~~y~~~g~~~~A~~~--~-~kAL~~---~-~~~a~~~lg~~~~~~g~~~~A~~~~~kal 807 (855)
...|. .... .+-..+...|..+.+... . ...... . ....-...++++...|+.++|...++.+.
T Consensus 214 --~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~ 291 (355)
T cd05804 214 --APSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALK 291 (355)
T ss_pred --ccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 44441 1111 222333334433222222 1 111111 1 22333468888899999999999998877
Q ss_pred HHccC---C------HHHHHHHhh----cCCHHHHHHHHHHHHhcC
Q 003035 808 EKAQY---S------ASAFEKRSE----YSDREMAKNDLNMATQLD 840 (855)
Q Consensus 808 ~~~p~---~------~~a~~~lg~----~g~~eeA~~~~~kAl~l~ 840 (855)
..... . .......+. .|++++|...+..|+.+-
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 292 GRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 65432 2 122222232 999999999999998763
No 83
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.57 E-value=8.3e-13 Score=152.54 Aligned_cols=99 Identities=17% Similarity=0.134 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHH--------cCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHH
Q 003035 749 QALNNLGSIYVE--------CGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFE 818 (855)
Q Consensus 749 ~a~~~LG~~y~~--------~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~ 818 (855)
..|.|||.-|.. +.+-..|+.|+.+++++. +...|..||.+ ...|++.-|...|-+.+...|.+...|.
T Consensus 776 ~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~ 854 (1238)
T KOG1127|consen 776 YPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWL 854 (1238)
T ss_pred chHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhhee
Confidence 467777777665 223457888888888887 56667777766 5557888888888888888888888888
Q ss_pred HHhh----cCCHHHHHHHHHHHHhcCCCCcccch
Q 003035 819 KRSE----YSDREMAKNDLNMATQLDPLRTYPYR 848 (855)
Q Consensus 819 ~lg~----~g~~eeA~~~~~kAl~l~P~~~~~~~ 848 (855)
++|. ..|++.|...+.++..++|.+..+|-
T Consensus 855 NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~Wl 888 (1238)
T KOG1127|consen 855 NLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWL 888 (1238)
T ss_pred ccceeEEecccHHHhhHHHHhhhhcCchhhHHHH
Confidence 8888 77888888888888888888877764
No 84
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.55 E-value=1.8e-12 Score=128.91 Aligned_cols=200 Identities=17% Similarity=0.111 Sum_probs=172.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHH
Q 003035 551 LELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVIN 630 (855)
Q Consensus 551 l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~ 630 (855)
..-+|.-|+..||+..|...++++|+.||++
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~------------------------------------------------- 68 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSY------------------------------------------------- 68 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-------------------------------------------------
Confidence 3445777888888888888888888777764
Q ss_pred HHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--cCCh-
Q 003035 631 QMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI--ERTF- 707 (855)
Q Consensus 631 ~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~--~p~~- 707 (855)
..+|..+|.+|...|..+.|.+.|++|++++|++.+++++.|+.++.+|++++|...|++|+.. .+..
T Consensus 69 ---------~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s 139 (250)
T COG3063 69 ---------YLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPS 139 (250)
T ss_pred ---------HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcc
Confidence 3345667888999999999999999999999999999999999999999999999999999985 2334
Q ss_pred HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHH
Q 003035 708 EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAH 783 (855)
Q Consensus 708 ~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~ 783 (855)
..+-++|.+-.+.|+++.|..+ |++++ ..+|+ .....++..+.+.|++..|...+++-..-. ....+
T Consensus 140 ~t~eN~G~Cal~~gq~~~A~~~----l~raL-----~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL 210 (250)
T COG3063 140 DTLENLGLCALKAGQFDQAEEY----LKRAL-----ELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESL 210 (250)
T ss_pred hhhhhhHHHHhhcCCchhHHHH----HHHHH-----HhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHH
Confidence 8999999999999999999999 99999 88888 788889999999999999999999887766 66666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHH
Q 003035 784 QGLARVYYLKNELKAAYDEMTKLLEKAQYSASAF 817 (855)
Q Consensus 784 ~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~ 817 (855)
.--..+-...||-+.|-++=.+.....|.....-
T Consensus 211 ~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q 244 (250)
T COG3063 211 LLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQ 244 (250)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 6666788888999999998888888899876543
No 85
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.54 E-value=3.4e-14 Score=149.49 Aligned_cols=183 Identities=15% Similarity=0.087 Sum_probs=151.2
Q ss_pred cCCCCCCcEEEEEcCeEEEeeehhhhcCCHHHHHhhcCCCccCCCCee--EecCCCCCHHHHHHHHHHhccCCCCCCCHH
Q 003035 212 LSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTI--DFSHDGVSVEGLRAVEVYTRTSRVDLFCPG 289 (855)
Q Consensus 212 ~~~~~~~~V~f~v~~~~~~aHr~vLaa~S~~F~~mf~~~~~E~~~~~I--~l~~~~is~~~~~~ll~y~YTg~l~~~~~~ 289 (855)
++..+.+||.+..=|++.+.||.-| ..|+||++||.|.|+|+++..| +|.++.|+..+|..++.=+|.++++ |..+
T Consensus 64 f~q~enSDv~l~alg~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEve-I~l~ 141 (488)
T KOG4682|consen 64 FLQGENSDVILEALGFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVE-IKLS 141 (488)
T ss_pred HhcCCCcceehhhccceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhee-ccHH
Confidence 5677888899999999999999999 7899999999999999999854 4556679999999999999999999 9999
Q ss_pred HHHHHHHHhchhChHHHHHHHHHHHHhhcCChhhHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhcCChh--------HH
Q 003035 290 IVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPK--------VM 361 (855)
Q Consensus 290 ~~~~ll~~A~~~~~~~Lk~~C~~~l~~~l~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~v~~~~~--------f~ 361 (855)
.|..+|++|..+++++|.+.|.+.+++.|+ ++|++.+++.+..|+...+++.|++++..|+..+....- +.
T Consensus 142 dv~gvlAaA~~lqldgl~qrC~evMie~ls-pkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~q~l~ei~~~Lm~ 220 (488)
T KOG4682|consen 142 DVVGVLAAACLLQLDGLIQRCGEVMIETLS-PKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNVQLLKEISINLMK 220 (488)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhcC-hhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhHHHHHhcCHHHHH
Confidence 999999999999999999999999999999 999999999999999999999999999999998876442 22
Q ss_pred hhhcCchhHHHHHhhchhhHHHHHHHHHhhcccccchhhH
Q 003035 362 KIFCSSEATERLANVGHASFLLYYFLSQVAMEKDRVSNTT 401 (855)
Q Consensus 362 ~ll~~~~~~~r~~~~~~~~f~l~~~La~~~~~~~~~~~~a 401 (855)
.|+.+++.. ...-+.-++--+..++++...+..+.+
T Consensus 221 ~ll~SpnLf----vmq~EfdLyttlk~WmfLql~pd~~~~ 256 (488)
T KOG4682|consen 221 QLLGSPNLF----VMQVEFDLYTTLKKWMFLQLVPDWNGS 256 (488)
T ss_pred HHhCCCCeE----EEEeeehHHHHHHHHHHhhhcccccch
Confidence 333333321 112222233345667777776645543
No 86
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.49 E-value=7.4e-13 Score=150.34 Aligned_cols=217 Identities=18% Similarity=0.136 Sum_probs=182.7
Q ss_pred HcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc-
Q 003035 634 INDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH--------SSSEHERLVYEGWILYDTGHREEALSRAEKSISIE- 704 (855)
Q Consensus 634 ~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~--------~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~- 704 (855)
..+|........++..|..+|+++.|+..++.+++. .|.-......+|.+|..++++++|+..|++|+++.
T Consensus 193 ~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 193 DEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred cCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 345777777777999999999999999999999998 67666777789999999999999999999999873
Q ss_pred -------CCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCC---CCCHH--HHHHHHHHHHHHcCCHHHHHHHH
Q 003035 705 -------RTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSD---GLRKG--QALNNLGSIYVECGKLDQAENCY 771 (855)
Q Consensus 705 -------p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~---~~~p~--~a~~~LG~~y~~~g~~~~A~~~~ 771 (855)
|.. .++.++|.+|...|++++|..+ +++|++.... ...|. ..+.+++.++..++++++|+..|
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~----~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~ 348 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEY----CERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLL 348 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHH----HHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 333 8899999999999999999999 8888743322 22233 78889999999999999999999
Q ss_pred HHHHhcc-------c---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--------cCCHHHHHHHhh----cCCHHHH
Q 003035 772 INALDIK-------H---TRAHQGLARVYYLKNELKAAYDEMTKLLEKA--------QYSASAFEKRSE----YSDREMA 829 (855)
Q Consensus 772 ~kAL~~~-------~---~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~--------p~~~~a~~~lg~----~g~~eeA 829 (855)
++++++. + +..+.++|++|..+|++++|++++++||.+. +.....++++|. .+++++|
T Consensus 349 q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a 428 (508)
T KOG1840|consen 349 QKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEA 428 (508)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchH
Confidence 9999876 2 3567899999999999999999999999975 333567888888 7888888
Q ss_pred HHHHHHHHhc-------CCCCcccchhhhccc
Q 003035 830 KNDLNMATQL-------DPLRTYPYRYRAAER 854 (855)
Q Consensus 830 ~~~~~kAl~l-------~P~~~~~~~~~a~~~ 854 (855)
...|.++..+ .|+-.++|+.-|++|
T Consensus 429 ~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y 460 (508)
T KOG1840|consen 429 EQLFEEAKDIMKLCGPDHPDVTYTYLNLAALY 460 (508)
T ss_pred HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Confidence 8888877766 477788998888876
No 87
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.47 E-value=2e-12 Score=135.80 Aligned_cols=176 Identities=13% Similarity=0.155 Sum_probs=127.1
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh----H
Q 003035 636 DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH---ERLVYEGWILYDTGHREEALSRAEKSISIERTF----E 708 (855)
Q Consensus 636 ~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~---~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~----~ 708 (855)
++..+..++.+|..++..|++++|+..|+++++.+|+++ .+++.+|.++..+|++++|+..|+++++.+|++ .
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 456678899999999999999999999999999999876 578999999999999999999999999999987 3
Q ss_pred HHHHHHHHHHHC--------CCCchhHHHHHHHHHHHhcCCCCCCCHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003035 709 AFFLKAYILADT--------NLDPESSTYVIQLLEEALRCPSDGLRKG-----QALNNLGSIYVECGKLDQAENCYINAL 775 (855)
Q Consensus 709 a~~~lg~~~~~~--------g~~~~A~~~~~~lle~al~~~~~~~~p~-----~a~~~LG~~y~~~g~~~~A~~~~~kAL 775 (855)
+++.+|.++... |++++|+.. |++++ ...|+ .++..++..+..
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~----~~~~~-----~~~p~~~~~~~a~~~~~~~~~~--------------- 164 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEA----FQELI-----RRYPNSEYAPDAKKRMDYLRNR--------------- 164 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHH----HHHHH-----HHCCCChhHHHHHHHHHHHHHH---------------
Confidence 799999999886 778889999 99999 55554 222222111100
Q ss_pred hcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCC---HHHHHHHhh----cCCHHHHHHHHHHHHh
Q 003035 776 DIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS---ASAFEKRSE----YSDREMAKNDLNMATQ 838 (855)
Q Consensus 776 ~~~~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~---~~a~~~lg~----~g~~eeA~~~~~kAl~ 838 (855)
.......+|.++..+|++.+|+..++++++..|+. +.++..+|. .|++++|..+++....
T Consensus 165 ---~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 165 ---LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred ---HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 01122345555666666666666666666654433 345555555 5666666655544433
No 88
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.47 E-value=8e-11 Score=121.99 Aligned_cols=290 Identities=13% Similarity=0.064 Sum_probs=205.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHccCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHH
Q 003035 519 KYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLL 597 (855)
Q Consensus 519 ~~~a~~~~~~~~~~~A~~~~~k~l~~~p~-~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll 597 (855)
|..|..++-.++.++|+..|-.+++.+|. .++..-+|.+|...|..+.|+..-+.++ ..|+... ++....+
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~-~spdlT~-------~qr~lAl 110 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLL-ESPDLTF-------EQRLLAL 110 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHh-cCCCCch-------HHHHHHH
Confidence 44566666677778888888888777773 5666667778888888888887655444 3555431 1111112
Q ss_pred HHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc----
Q 003035 598 NHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---- 673 (855)
Q Consensus 598 ~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~---- 673 (855)
.+..++|..+ .++++ +-.++..+.+....-..+.-.+..+|-...++++|+..-++..++.|..
T Consensus 111 ~qL~~Dym~a----Gl~DR--------AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e 178 (389)
T COG2956 111 QQLGRDYMAA----GLLDR--------AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE 178 (389)
T ss_pred HHHHHHHHHh----hhhhH--------HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH
Confidence 2222222111 12222 1223333333323334455566677888888999999999888888765
Q ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH---
Q 003035 674 -HERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--- 748 (855)
Q Consensus 674 -~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--- 748 (855)
+..+..++..+....+.+.|+..+++|++.+|+. .+-..+|.+....|+|+.|++. ++.++ ..+|+
T Consensus 179 IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~----~e~v~-----eQn~~yl~ 249 (389)
T COG2956 179 IAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEA----LERVL-----EQNPEYLS 249 (389)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHH----HHHHH-----HhChHHHH
Confidence 3345668888888899999999999999999999 8888999999999999999999 99999 88888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh-----
Q 003035 749 QALNNLGSIYVECGKLDQAENCYINALDIK-HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----- 822 (855)
Q Consensus 749 ~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~-~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~----- 822 (855)
.+...|-.+|.+.|+.++.+..+.++++.. .+.+...++..-..+.-.+.|...+.+-+..+|+--..+..+..
T Consensus 250 evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~da 329 (389)
T COG2956 250 EVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADA 329 (389)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccc
Confidence 888889999999999999999999999988 77777777777777777888999999999999986655555555
Q ss_pred -cCCHHHHHHHHHHHH
Q 003035 823 -YSDREMAKNDLNMAT 837 (855)
Q Consensus 823 -~g~~eeA~~~~~kAl 837 (855)
-|...+....+++.+
T Consensus 330 eeg~~k~sL~~lr~mv 345 (389)
T COG2956 330 EEGRAKESLDLLRDMV 345 (389)
T ss_pred cccchhhhHHHHHHHH
Confidence 444555555554443
No 89
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.46 E-value=1.6e-10 Score=129.29 Aligned_cols=408 Identities=14% Similarity=0.123 Sum_probs=258.1
Q ss_pred HHHHhhcccccchhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhc--chhhhhhHHHHHHH
Q 003035 386 FLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAG--HIYSLAGLARAKYK 463 (855)
Q Consensus 386 ~La~~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~--~~~a~~~la~~~~~ 463 (855)
+.|-.....|+ .++|...-...++.|+.+ ...||.+|.++-.-++|++|++||+.|+.++ +...+..++.+...
T Consensus 46 mkGL~L~~lg~-~~ea~~~vr~glr~d~~S---~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q 121 (700)
T KOG1156|consen 46 MKGLTLNCLGK-KEEAYELVRLGLRNDLKS---HVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQ 121 (700)
T ss_pred hccchhhcccc-hHHHHHHHHHHhccCccc---chhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 34444444555 777877777777766654 5789999999999999999999999999874 55678899999999
Q ss_pred hCChHHHHHHHHhHHHcCCCchHHHH--HHh--hccCcchHHHHHHHHHHhC---CCC-----chhHHHHHHHHHHhCCH
Q 003035 464 VGQQYSAYKLINSIISEHKPTGWMYQ--ERS--LYNLGREKIVDLNYASELD---PTL-----SFPYKYRAVAKMEEGQI 531 (855)
Q Consensus 464 ~g~~~~A~~~l~~~i~~~p~~~~~y~--~~~--~~~~~~~A~~~l~~a~~ld---P~~-----~~a~~~~a~~~~~~~~~ 531 (855)
.++++...+.=...++..|.+...|. ..+ +.++...|...++.-.... |.. .....++..+..+.|.+
T Consensus 122 mRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~ 201 (700)
T KOG1156|consen 122 MRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSL 201 (700)
T ss_pred HHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccH
Confidence 99999888888888999887643332 222 1233455555554444333 322 33566778888999999
Q ss_pred HHHHHHHHHHHccCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhH---------HHHHHHHHh
Q 003035 532 RAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDH---------LVKLLNHHV 601 (855)
Q Consensus 532 ~~A~~~~~k~l~~~p~-~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~---------l~~ll~~~~ 601 (855)
++|++.+.+.-..--+ ......+|.++..++++++|+..|...+..+|++..++....... +..++...-
T Consensus 202 q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls 281 (700)
T KOG1156|consen 202 QKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILS 281 (700)
T ss_pred HHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 9998876654321112 233456799999999999999999999999999876543321111 111222222
Q ss_pred hccChhhhHHHHhhhcccccccc--hHHHHHHHHHcC-CCChHHHHHHHHHHHHcCC---HHHHHHHHHHHHhc------
Q 003035 602 RSWSPADCWIKLYDRWSSVDDIG--SLAVINQMLIND-PGKSFLRFRQSLLLLRLNC---QKAAMRCLRLARNH------ 669 (855)
Q Consensus 602 ~~~~~a~~~~~~~~~~~~~~d~~--al~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~---~~~A~~~l~~al~~------ 669 (855)
+++....|..++--.....+... --.++...+... |. +.-.+--++-.-.+ .++=+..|...+.-
T Consensus 282 ~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~ 358 (700)
T KOG1156|consen 282 EKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNF 358 (700)
T ss_pred hcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCc
Confidence 22222222211100000000000 001122222211 10 00000000000000 11111122222221
Q ss_pred ------CCCcH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcC
Q 003035 670 ------SSSEH--ERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRC 740 (855)
Q Consensus 670 ------~p~~~--~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~ 740 (855)
.|-.+ +.++.++.-+...|+++.|..+.+.||.--|+. +.|...|.++-..|+.++|... ++++.
T Consensus 359 ~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~----l~ea~-- 432 (700)
T KOG1156|consen 359 LDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAW----LDEAQ-- 432 (700)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHH----HHHHH--
Confidence 13233 445788999999999999999999999999999 9999999999999999999999 99999
Q ss_pred CCCCCCHH-HHHH-HHHHHHHHcCCHHHHHHHHHHHHhcc--------cHH-HHH--HHHHHHHHcCCHHHHHHHHHHHH
Q 003035 741 PSDGLRKG-QALN-NLGSIYVECGKLDQAENCYINALDIK--------HTR-AHQ--GLARVYYLKNELKAAYDEMTKLL 807 (855)
Q Consensus 741 ~~~~~~p~-~a~~-~LG~~y~~~g~~~~A~~~~~kAL~~~--------~~~-a~~--~lg~~~~~~g~~~~A~~~~~kal 807 (855)
.++.. .+.| .-|......++.++|.+..-+--.-. +.+ .|+ .-|..|.++|++..|++-|..+-
T Consensus 433 ---elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 433 ---ELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred ---hccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 77655 5555 46777788899999988876655433 112 122 34788899999988888776655
Q ss_pred HH
Q 003035 808 EK 809 (855)
Q Consensus 808 ~~ 809 (855)
+.
T Consensus 510 k~ 511 (700)
T KOG1156|consen 510 KH 511 (700)
T ss_pred HH
Confidence 43
No 90
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.45 E-value=1.3e-10 Score=120.54 Aligned_cols=297 Identities=13% Similarity=0.109 Sum_probs=226.9
Q ss_pred HHhhhhHhhhhcHHHHHHHHHHHHHhcch--hhhhhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHhhccCcchH
Q 003035 423 HQLGCVMFEREEYKDACYYFEAAADAGHI--YSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREK 500 (855)
Q Consensus 423 ~~LG~~~l~~g~~~eA~~~~~~Al~~~~~--~a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~~~~~~~A 500 (855)
+..|.-++-.++.|+|++.|-..++.++. .+++.||.++...|..+.|+..-..+++ .|+.... .+
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~--qr--------- 106 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFE--QR--------- 106 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchH--HH---------
Confidence 35677777788889999999888877654 5788888899999988888876555543 2322111 00
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 003035 501 IVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALES 579 (855)
Q Consensus 501 ~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p-~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P 579 (855)
..+...+|.-|+..|-++-|...|....+... ...++..+..+|.+..++++|++.-++..++.|
T Consensus 107 --------------~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~ 172 (389)
T COG2956 107 --------------LLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGG 172 (389)
T ss_pred --------------HHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC
Confidence 01345678899999999999999999887433 456777778899999999999999999888877
Q ss_pred chhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHH
Q 003035 580 NYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAA 659 (855)
Q Consensus 580 ~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A 659 (855)
+.... . + +..+-.+|..++..++.+.|
T Consensus 173 q~~~~----e------------------------------------I-------------AqfyCELAq~~~~~~~~d~A 199 (389)
T COG2956 173 QTYRV----E------------------------------------I-------------AQFYCELAQQALASSDVDRA 199 (389)
T ss_pred ccchh----H------------------------------------H-------------HHHHHHHHHHHhhhhhHHHH
Confidence 63210 0 0 11233456666777889999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh--HHHHHHHHHHHHCCCCchhHHHHHHHHHHH
Q 003035 660 MRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF--EAFFLKAYILADTNLDPESSTYVIQLLEEA 737 (855)
Q Consensus 660 ~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~--~a~~~lg~~~~~~g~~~~A~~~~~~lle~a 737 (855)
+..+.+|++.+|+...+-..+|.++...|+|+.|++.++.+++.+|++ ++.-.+-.+|...|+.++.... +.++
T Consensus 200 ~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f----L~~~ 275 (389)
T COG2956 200 RELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF----LRRA 275 (389)
T ss_pred HHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH----HHHH
Confidence 999999999999999999999999999999999999999999999999 8899999999999999999999 9999
Q ss_pred hcCCCCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHc---CCHHHHHHHHHHHH
Q 003035 738 LRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDIK-HTRAHQGLARVYYLK---NELKAAYDEMTKLL 807 (855)
Q Consensus 738 l~~~~~~~~p~-~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~-~~~a~~~lg~~~~~~---g~~~~A~~~~~kal 807 (855)
. +..++ ++...++..-....=.+.|.....+-+..+ .....+.+-.....- |...+.+..+++.+
T Consensus 276 ~-----~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 276 M-----ETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred H-----HccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 8 77777 777778887777777788888888877777 666655554443332 23444555555544
No 91
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.42 E-value=1.2e-11 Score=138.14 Aligned_cols=200 Identities=19% Similarity=0.072 Sum_probs=169.4
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHH
Q 003035 636 DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS---EHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFF 711 (855)
Q Consensus 636 ~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~---~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~ 711 (855)
||+.+..|..+|.++...|+.++|.+.+.++.+..|. ..+..+..|.++...|++++|+..++++++.+|++ .++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 7999999999999999999999999999998887774 46678889999999999999999999999999999 6766
Q ss_pred HHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHH
Q 003035 712 LKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLA 787 (855)
Q Consensus 712 ~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg 787 (855)
. +..+...|.+..+... ..+++.. .....|. .++..+|.++..+|++++|+..+++++++. ++.++..+|
T Consensus 82 ~-~~~~~~~~~~~~~~~~----~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la 155 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDH----VARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVA 155 (355)
T ss_pred H-hHHHHHhcccccCchh----HHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHH
Confidence 6 7777777777776666 4444422 1144454 677789999999999999999999999999 788999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHccCCHH----HHHHHhh----cCCHHHHHHHHHHHHhcCC
Q 003035 788 RVYYLKNELKAAYDEMTKLLEKAQYSAS----AFEKRSE----YSDREMAKNDLNMATQLDP 841 (855)
Q Consensus 788 ~~~~~~g~~~~A~~~~~kal~~~p~~~~----a~~~lg~----~g~~eeA~~~~~kAl~l~P 841 (855)
.+++..|++++|+..++++++..|.++. .+.++|. .|++++|+..|++++...|
T Consensus 156 ~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 156 HVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 9999999999999999999999875433 3456666 9999999999999987776
No 92
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.40 E-value=1.4e-09 Score=121.94 Aligned_cols=353 Identities=16% Similarity=0.107 Sum_probs=218.6
Q ss_pred HHHHhhhhHhhhhcHHHHHHHHHHHHHh--cchhhhhhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHhhc----
Q 003035 421 ALHQLGCVMFEREEYKDACYYFEAAADA--GHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLY---- 494 (855)
Q Consensus 421 a~~~LG~~~l~~g~~~eA~~~~~~Al~~--~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~~---- 494 (855)
+++....-.++.|+|....+..++.++. .|..++...|..+...|+.++|++..+..+..++...--|--.|.+
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 3444444456778899999998888874 4677888889999999999999999999988887653222222211
Q ss_pred cCcchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCCCH-hHHHHHHHHHHHcCCHHHHHHHHHH
Q 003035 495 NLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV-DCLELRAWLFIAADDYESALRDTLA 573 (855)
Q Consensus 495 ~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~~-~~l~lra~~y~~~gd~~~A~~~~~~ 573 (855)
.+.++|++.|..|+.++|+|...+.-++.+..++++++.....=.+.+...|+. ..+.-.|..+.-.|++..|...++.
T Consensus 89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~e 168 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEE 168 (700)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234789999999999999999999889989999999999988888888888864 3445556778888999999888877
Q ss_pred HHhcC---CchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchH-HHHHHHHHcCC---CChHHHHHH
Q 003035 574 LLALE---SNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSL-AVINQMLINDP---GKSFLRFRQ 646 (855)
Q Consensus 574 aL~~~---P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al-~~~~~~l~~~p---~~~~~~~~~ 646 (855)
..... |+...+ .....++..... ..+. ++. .+++......| ++.......
T Consensus 169 f~~t~~~~~s~~~~------e~se~~Ly~n~i----------~~E~-------g~~q~ale~L~~~e~~i~Dkla~~e~k 225 (700)
T KOG1156|consen 169 FEKTQNTSPSKEDY------EHSELLLYQNQI----------LIEA-------GSLQKALEHLLDNEKQIVDKLAFEETK 225 (700)
T ss_pred HHHhhccCCCHHHH------HHHHHHHHHHHH----------HHHc-------ccHHHHHHHHHhhhhHHHHHHHHhhhH
Confidence 76544 221110 111111111000 0000 011 11222222222 122334456
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHH-HHHHHHHhcc---------------------
Q 003035 647 SLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEAL-SRAEKSISIE--------------------- 704 (855)
Q Consensus 647 a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl-~~~~kal~~~--------------------- 704 (855)
+.++++++++++|...|...+..+|++..-+..+-.++..-.+--+++ ..|...-+..
T Consensus 226 a~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~ 305 (700)
T KOG1156|consen 226 ADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKE 305 (700)
T ss_pred HHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHH
Confidence 788889999999999999999999988776654444442111111222 2222221111
Q ss_pred -------------------------------------------------------------CCh--HHHHHHHHHHHHCC
Q 003035 705 -------------------------------------------------------------RTF--EAFFLKAYILADTN 721 (855)
Q Consensus 705 -------------------------------------------------------------p~~--~a~~~lg~~~~~~g 721 (855)
|.. ..++.++.-+...|
T Consensus 306 ~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g 385 (700)
T KOG1156|consen 306 IVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLG 385 (700)
T ss_pred HHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcc
Confidence 111 33445556666666
Q ss_pred CCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHH
Q 003035 722 LDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELK 797 (855)
Q Consensus 722 ~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~ 797 (855)
+++.|..+ ++.|| ...|. +.|...|.++...|++++|...+..|-+++ |-.+-..-|....+.++.+
T Consensus 386 ~~~~A~~y----Id~AI-----dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~ 456 (700)
T KOG1156|consen 386 DYEVALEY----IDLAI-----DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIE 456 (700)
T ss_pred cHHHHHHH----HHHHh-----ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccH
Confidence 66666666 66666 66666 666666666666666666666666666666 2222224555555556666
Q ss_pred HHHHHHHH
Q 003035 798 AAYDEMTK 805 (855)
Q Consensus 798 ~A~~~~~k 805 (855)
+|.+...+
T Consensus 457 eA~~~~sk 464 (700)
T KOG1156|consen 457 EAEEVLSK 464 (700)
T ss_pred HHHHHHHH
Confidence 66655443
No 93
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=1.4e-08 Score=109.85 Aligned_cols=421 Identities=10% Similarity=0.021 Sum_probs=307.7
Q ss_pred ccccchhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhcch--hhhhhHHHHHHHhCChHHH
Q 003035 393 EKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHI--YSLAGLARAKYKVGQQYSA 470 (855)
Q Consensus 393 ~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~~--~a~~~la~~~~~~g~~~~A 470 (855)
++++ ...|...++++++-+..+ ...|...+..-++.+....|...+++|+.+-|- ..++.-...--..|+...|
T Consensus 85 sq~e-~~RARSv~ERALdvd~r~---itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~ga 160 (677)
T KOG1915|consen 85 SQKE-IQRARSVFERALDVDYRN---ITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGA 160 (677)
T ss_pred hHHH-HHHHHHHHHHHHhccccc---chHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHH
Confidence 3445 678999999999876544 346778888999999999999999999986442 2333333344567999999
Q ss_pred HHHHHhHHHcCCC-chHHHHHH--hhccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCCC
Q 003035 471 YKLINSIISEHKP-TGWMYQER--SLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS 547 (855)
Q Consensus 471 ~~~l~~~i~~~p~-~~~~y~~~--~~~~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~ 547 (855)
.+.+++-++-.|+ ++|.-.-. ..|.+.+.|-..|++-+--+|+. ..|..-|.--+..|+...|...|.++++.-.+
T Consensus 161 RqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v-~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 161 RQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKV-SNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 9999999999996 56653222 23566788888999999888864 45666788888999999999999999974332
Q ss_pred -H--hHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhccccccc
Q 003035 548 -V--DCLE-LRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDI 623 (855)
Q Consensus 548 -~--~~l~-lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~ 623 (855)
. +.+. .-|.+-..++.++.|--.|+-+|..-|.+.. ..+..-+...-.++.. .....|+
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~ra-------eeL~k~~~~fEKqfGd----------~~gIEd~ 302 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRA-------EELYKKYTAFEKQFGD----------KEGIEDA 302 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH-------HHHHHHHHHHHHHhcc----------hhhhHHH
Confidence 2 2222 2356677888999999999999988887531 1111111111111110 0011110
Q ss_pred c-h--HHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH-------HHHHHH---HHCCCH
Q 003035 624 G-S--LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLV-------YEGWIL---YDTGHR 690 (855)
Q Consensus 624 ~-a--l~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~-------~lg~~~---~~~g~~ 690 (855)
- . --.+.+.+..+|.|-..++..-.+.-..|+.+.-.+.|++|+..-|...+-.+ .+-.++ ....+.
T Consensus 303 Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 303 IVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred HhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 0 0 01246788899999999999888888899999999999999998886443221 112222 357899
Q ss_pred HHHHHHHHHHHhccCCh-----HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH-HHHHHHHHHHHHcCCH
Q 003035 691 EEALSRAEKSISIERTF-----EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKL 764 (855)
Q Consensus 691 ~eAl~~~~kal~~~p~~-----~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~-~a~~~LG~~y~~~g~~ 764 (855)
+.+.+.|+.+|.+-|.. ..|...|.....+.+.+.|.+. +-.|| ..-|. ..+-..-.+-.+++++
T Consensus 383 ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARki----LG~AI-----G~cPK~KlFk~YIelElqL~ef 453 (677)
T KOG1915|consen 383 ERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKI----LGNAI-----GKCPKDKLFKGYIELELQLREF 453 (677)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHH----HHHHh-----ccCCchhHHHHHHHHHHHHhhH
Confidence 99999999999998853 7788888888999999999999 99999 65555 3333334455678899
Q ss_pred HHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh------cCCHHHHHHHHHHH
Q 003035 765 DQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE------YSDREMAKNDLNMA 836 (855)
Q Consensus 765 ~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~------~g~~eeA~~~~~kA 836 (855)
|.....|++-|+-. +..++..+|..-..+|+.+.|...|+-|+....-+..-+..-+. .|.+++|...|++.
T Consensus 454 DRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerl 533 (677)
T KOG1915|consen 454 DRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERL 533 (677)
T ss_pred HHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHH
Confidence 99999999999999 89999999999999999999999999888764433322222233 89999999999999
Q ss_pred HhcCCCCc
Q 003035 837 TQLDPLRT 844 (855)
Q Consensus 837 l~l~P~~~ 844 (855)
|+..+.-.
T Consensus 534 L~rt~h~k 541 (677)
T KOG1915|consen 534 LDRTQHVK 541 (677)
T ss_pred HHhcccch
Confidence 99876543
No 94
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.39 E-value=1.7e-11 Score=128.82 Aligned_cols=147 Identities=15% Similarity=-0.025 Sum_probs=117.5
Q ss_pred cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh----HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCC
Q 003035 669 HSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDG 744 (855)
Q Consensus 669 ~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~----~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~ 744 (855)
.++..++.++.+|..++..|++++|+..|++++..+|++ .+++.+|.++...|++++|+.. |++++ .
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~----~~~~l-----~ 98 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAA----ADRFI-----R 98 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHH----HHHHH-----H
Confidence 446678899999999999999999999999999999975 6889999999999999999999 99999 6
Q ss_pred CCHH-----HHHHHHHHHHHHc--------CCHHHHHHHHHHHHhcc--cHHHH---HHHHHHHHHcCCHHHHHHHHHHH
Q 003035 745 LRKG-----QALNNLGSIYVEC--------GKLDQAENCYINALDIK--HTRAH---QGLARVYYLKNELKAAYDEMTKL 806 (855)
Q Consensus 745 ~~p~-----~a~~~LG~~y~~~--------g~~~~A~~~~~kAL~~~--~~~a~---~~lg~~~~~~g~~~~A~~~~~ka 806 (855)
..|+ .+++.+|.++... |++++|++.|+++++.+ +..++ ..+++.....
T Consensus 99 ~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~------------- 165 (235)
T TIGR03302 99 LHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRL------------- 165 (235)
T ss_pred HCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHH-------------
Confidence 6665 5789999999876 78889999999998877 43333 2222221110
Q ss_pred HHHccCCHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCCc
Q 003035 807 LEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLDPLRT 844 (855)
Q Consensus 807 l~~~p~~~~a~~~lg~----~g~~eeA~~~~~kAl~l~P~~~ 844 (855)
......+|. .|++++|+..|+++++..|+++
T Consensus 166 -------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 200 (235)
T TIGR03302 166 -------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTP 200 (235)
T ss_pred -------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCc
Confidence 111223444 8999999999999999988764
No 95
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.38 E-value=8e-10 Score=118.10 Aligned_cols=300 Identities=18% Similarity=0.113 Sum_probs=204.2
Q ss_pred HHHHHhhhhHhhhhcHHHHHHHHHHHHHhcch--hhhhhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHhhccCc
Q 003035 420 LALHQLGCVMFEREEYKDACYYFEAAADAGHI--YSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLG 497 (855)
Q Consensus 420 ~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~~--~a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~~~~~ 497 (855)
.....-|..-+..|+|.+|++...++-+-++. -++..-|++...+|+.+.|-..
T Consensus 85 ~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~y------------------------ 140 (400)
T COG3071 85 RKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRY------------------------ 140 (400)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHH------------------------
Confidence 34455677777788888888888776654433 3344445666666666555444
Q ss_pred chHHHHHHHHHHhCCCCch-hHHHHHHHHHHhCCHHHHHHHHHHHHccCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003035 498 REKIVDLNYASELDPTLSF-PYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALL 575 (855)
Q Consensus 498 ~~A~~~l~~a~~ldP~~~~-a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p-~~~~l~lra~~y~~~gd~~~A~~~~~~aL 575 (855)
+.++.++.++... .+..++.++..+|++..|..-+.++++..| .++.+.+...+|...|++......+.++-
T Consensus 141 ------L~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ 214 (400)
T COG3071 141 ------LAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLR 214 (400)
T ss_pred ------HHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4455555333332 345688899999999999999999999999 58889999999999999999988877765
Q ss_pred hcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCC
Q 003035 576 ALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNC 655 (855)
Q Consensus 576 ~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~ 655 (855)
+..--+..-..++.......++.+......... +-+.|.. .-+.++ +++.+....+.-+.+.|+
T Consensus 215 ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g----L~~~W~~---------~pr~lr---~~p~l~~~~a~~li~l~~ 278 (400)
T COG3071 215 KAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG----LKTWWKN---------QPRKLR---NDPELVVAYAERLIRLGD 278 (400)
T ss_pred HccCCChHHHHHHHHHHHHHHHHHHhccccchH----HHHHHHh---------ccHHhh---cChhHHHHHHHHHHHcCC
Confidence 432110000000001111112222111111000 1111111 111222 334455566677889999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHH
Q 003035 656 QKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLL 734 (855)
Q Consensus 656 ~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~ll 734 (855)
.++|.+..+.+++..-+.. ....++ ...-++...=++..++.++..|++ ..+..+|..+.+.+.|.+|..+ |
T Consensus 279 ~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~----l 351 (400)
T COG3071 279 HDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEA----L 351 (400)
T ss_pred hHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHH----H
Confidence 9999999999998765433 222222 236788888999999999999999 9999999999999999999999 9
Q ss_pred HHHhcCCCCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003035 735 EEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDI 777 (855)
Q Consensus 735 e~al~~~~~~~~p~-~a~~~LG~~y~~~g~~~~A~~~~~kAL~~ 777 (855)
+.|+ ...|. ..++.+|+++.+.|+..+|.+++++++..
T Consensus 352 eaAl-----~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 352 EAAL-----KLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHH-----hcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999 88888 88999999999999999999999998843
No 96
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.36 E-value=7e-12 Score=121.22 Aligned_cols=120 Identities=8% Similarity=-0.017 Sum_probs=62.0
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC
Q 003035 627 AVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERT 706 (855)
Q Consensus 627 ~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~ 706 (855)
..+.++++.+|++ ++..|..+...|++++|+..|++++..+|+++++++.+|.++...|++++|+..|+++++++|+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 3444555555443 3334555555555555555555555555555555555555555555555555555555555555
Q ss_pred h-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHH
Q 003035 707 F-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIY 758 (855)
Q Consensus 707 ~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y 758 (855)
+ .+++++|.++...|++++|+.. |++++ ...|+ .++.++|.+.
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~----~~~Al-----~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREA----FQTAI-----KMSYADASWSEIRQNAQ 136 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHH----HHHHH-----HhCCCChHHHHHHHHHH
Confidence 5 5555555555555555555555 55555 44444 4444444443
No 97
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.35 E-value=7.5e-12 Score=120.98 Aligned_cols=99 Identities=12% Similarity=-0.023 Sum_probs=91.5
Q ss_pred cccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 003035 621 DDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKS 700 (855)
Q Consensus 621 ~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~ka 700 (855)
+...++..+.+++..+|.+..+++.+|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++
T Consensus 39 ~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~A 118 (144)
T PRK15359 39 DYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTA 118 (144)
T ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33457888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCh-HHHHHHHHHHHH
Q 003035 701 ISIERTF-EAFFLKAYILAD 719 (855)
Q Consensus 701 l~~~p~~-~a~~~lg~~~~~ 719 (855)
+++.|++ ..+.++|.+...
T Consensus 119 l~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 119 IKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred HHhCCCChHHHHHHHHHHHH
Confidence 9999999 888888877654
No 98
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.34 E-value=8.4e-10 Score=127.06 Aligned_cols=283 Identities=17% Similarity=0.134 Sum_probs=145.2
Q ss_pred hhHHHHHHHHHHhCCHHHHHHHHHHHHccCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccch----
Q 003035 516 FPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSG---- 590 (855)
Q Consensus 516 ~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~-~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~---- 590 (855)
....|++.++.+.|++++|++.+++....-++ ...+..+|.++.++|++++|...|+.+|..+|++..++..+..
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGL 84 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhh
Confidence 45567777888888888888887776665554 4556677888888888888888888888888887654432211
Q ss_pred ---------hHHHHHHHHHhhccChhhhHHHHhhhcccccccc--hHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHH
Q 003035 591 ---------DHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG--SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAA 659 (855)
Q Consensus 591 ---------~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~--al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A 659 (855)
.....++.+....+........+--.....+... .-..+...+.. .-|.++..+-.+|....+..-.
T Consensus 85 ~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 85 QLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred hcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChhHHHHH
Confidence 1111111111111111110000000000000000 00111222211 1122222222222222222211
Q ss_pred HHHHHHHHh---c------------CCCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCC
Q 003035 660 MRCLRLARN---H------------SSSE--HERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTN 721 (855)
Q Consensus 660 ~~~l~~al~---~------------~p~~--~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g 721 (855)
...+..... . .|.. .++++.+++.|...|++++|+.+.+++|+..|.. +.|+.+|.+|-..|
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC
Confidence 122222111 0 1111 2344666777777777777777777777777776 77777777777777
Q ss_pred CCchhHHHHHHHHHHHhcCCCCCCCHH-HHH-HHHHHHHHHcCCHHHHHHHHHHHHhcc-cH----------HHHHHHHH
Q 003035 722 LDPESSTYVIQLLEEALRCPSDGLRKG-QAL-NNLGSIYVECGKLDQAENCYINALDIK-HT----------RAHQGLAR 788 (855)
Q Consensus 722 ~~~~A~~~~~~lle~al~~~~~~~~p~-~a~-~~LG~~y~~~g~~~~A~~~~~kAL~~~-~~----------~a~~~lg~ 788 (855)
++.+|... ++.|- .+++. ... ...+..+.+.|+.++|.+....-...+ ++ .-...-|.
T Consensus 243 ~~~~Aa~~----~~~Ar-----~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~ 313 (517)
T PF12569_consen 243 DLKEAAEA----MDEAR-----ELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAE 313 (517)
T ss_pred CHHHHHHH----HHHHH-----hCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHH
Confidence 77777777 77776 66665 222 334455566677777766665544433 11 11234566
Q ss_pred HHHHcCCHHHHHHHHHHHHHH
Q 003035 789 VYYLKNELKAAYDEMTKLLEK 809 (855)
Q Consensus 789 ~~~~~g~~~~A~~~~~kal~~ 809 (855)
+|.++|++..|++.|..+.+.
T Consensus 314 a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 314 AYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 777777777777777666654
No 99
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=3.2e-09 Score=117.96 Aligned_cols=395 Identities=12% Similarity=0.015 Sum_probs=237.2
Q ss_pred HHhhhhHhhhhcHHHHHHHHHHHHHhcchhhhhhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHhhccCcchHHH
Q 003035 423 HQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIV 502 (855)
Q Consensus 423 ~~LG~~~l~~g~~~eA~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~~~~~~~A~~ 502 (855)
+..+-+.++.++.|+|+.+++ .++..+...+..-|.+.+++|++++|++.|+.+++.+.++-+.-...........-..
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~-~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~ 161 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK-GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQV 161 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh-cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhH
Confidence 567778899999999999998 4444444566677899999999999999999999887776544332222111111111
Q ss_pred HHHHHHHhCCCCc-hhHHHHHHHHHHhCCHHHHHHHHHHHHcc--------CCCH--------hHHHHHHHHHHHcCCHH
Q 003035 503 DLNYASELDPTLS-FPYKYRAVAKMEEGQIRAAISEIDRIIVF--------KLSV--------DCLELRAWLFIAADDYE 565 (855)
Q Consensus 503 ~l~~a~~ldP~~~-~a~~~~a~~~~~~~~~~~A~~~~~k~l~~--------~p~~--------~~l~lra~~y~~~gd~~ 565 (855)
+..+.....|+++ ..+|+.|-+++..|+|.+|++.+.+++.+ +-+. .+...++.++..+|+.+
T Consensus 162 ~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 162 QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 1455566666644 46788999999999999999999999421 1111 12334688999999999
Q ss_pred HHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHH-HHHHHHHcCCCChHHHH
Q 003035 566 SALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLA-VINQMLINDPGKSFLRF 644 (855)
Q Consensus 566 ~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~-~~~~~l~~~p~~~~~~~ 644 (855)
+|.+.|..++..+|.+.....- ....+..+ ... ..+... ..++.++.. .+.+. .....+. .......+.
T Consensus 242 ea~~iy~~~i~~~~~D~~~~Av-~~NNLva~-~~d-~~~~d~-~~l~~k~~~-----~~~l~~~~l~~Ls-~~qk~~i~~ 311 (652)
T KOG2376|consen 242 EASSIYVDIIKRNPADEPSLAV-AVNNLVAL-SKD-QNYFDG-DLLKSKKSQ-----VFKLAEFLLSKLS-KKQKQAIYR 311 (652)
T ss_pred HHHHHHHHHHHhcCCCchHHHH-Hhcchhhh-ccc-cccCch-HHHHHHHHH-----HHHhHHHHHHHHH-HHHHHHHHH
Confidence 9999999999998876421100 00000000 000 000000 000000000 00000 0000110 011223445
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh--HHHHHHHHHHHHCCC
Q 003035 645 RQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF--EAFFLKAYILADTNL 722 (855)
Q Consensus 645 ~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~--~a~~~lg~~~~~~g~ 722 (855)
..+++.+-.|+-+.+.+.....-...|....-.........+...+.+|+..+.+.-+-+|.. .+.+.++.....+|+
T Consensus 312 N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn 391 (652)
T KOG2376|consen 312 NNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGN 391 (652)
T ss_pred HHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCC
Confidence 566666666666666555544333333332222333344444447888888888888888877 677777888888888
Q ss_pred CchhHHHHHHHHHHHhcC-----CCCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc---------cHHHHHHHHH
Q 003035 723 DPESSTYVIQLLEEALRC-----PSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK---------HTRAHQGLAR 788 (855)
Q Consensus 723 ~~~A~~~~~~lle~al~~-----~~~~~~p~~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~---------~~~a~~~lg~ 788 (855)
+..|++. ++..+.. ..-..-| .+-..+-..|...++-+.|...+.+|+..- .-..+...+.
T Consensus 392 ~~~A~~i----l~~~~~~~~ss~~~~~~~P-~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~ 466 (652)
T KOG2376|consen 392 PEVALEI----LSLFLESWKSSILEAKHLP-GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAE 466 (652)
T ss_pred HHHHHHH----HHHHhhhhhhhhhhhccCh-hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhH
Confidence 8888888 5522200 0001122 222233445566666666666666666543 1223445566
Q ss_pred HHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh---cCCHHHHHHHH
Q 003035 789 VYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE---YSDREMAKNDL 833 (855)
Q Consensus 789 ~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~---~g~~eeA~~~~ 833 (855)
+..+.|+-++|...+++.++.+|++.+++..+-. .=|.++|+.+=
T Consensus 467 f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d~eka~~l~ 514 (652)
T KOG2376|consen 467 FKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLDPEKAESLS 514 (652)
T ss_pred HHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcCHHHHHHHh
Confidence 6777799999999999999999999999888776 56777776543
No 100
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=5.5e-09 Score=109.20 Aligned_cols=388 Identities=14% Similarity=0.070 Sum_probs=215.2
Q ss_pred hhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhcch--hhhhhHHHHHHHhCChHHHHHHHH
Q 003035 398 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHI--YSLAGLARAKYKVGQQYSAYKLIN 475 (855)
Q Consensus 398 ~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~~--~a~~~la~~~~~~g~~~~A~~~l~ 475 (855)
+..|+.+|+-....+... ......-+|..++..|+|++|...|+-+.+.++. .....||.++...|.+.+|.....
T Consensus 38 ytGAislLefk~~~~~EE--E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ 115 (557)
T KOG3785|consen 38 YTGAISLLEFKLNLDREE--EDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAE 115 (557)
T ss_pred chhHHHHHHHhhccchhh--hHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHh
Confidence 888999998776544322 2234456889999999999999999998876543 457788999999999988866544
Q ss_pred hHHHcCCCchH---HHHHHhhccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCCCHhHHH
Q 003035 476 SIISEHKPTGW---MYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLE 552 (855)
Q Consensus 476 ~~i~~~p~~~~---~y~~~~~~~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~~~~l~ 552 (855)
+ .|+++- .....+.--..++.+..+..-+.-. ..-...+|.+....-.|++||..|++++..+|...++.
T Consensus 116 k----a~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~---~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alN 188 (557)
T KOG3785|consen 116 K----APKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT---LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALN 188 (557)
T ss_pred h----CCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh---HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhH
Confidence 4 444431 1111111112244444444333211 12334567777777889999999999999888765543
Q ss_pred -HHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhh------------cccchhHHHHHHHHHhhccChhhhHHHHhhhccc
Q 003035 553 -LRAWLFIAADDYESALRDTLALLALESNYMMFH------------GRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSS 619 (855)
Q Consensus 553 -lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~------------~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~ 619 (855)
.+|.+|.++.-|+-+.+.+.-.|...|+...+. ++.+.+.+..+....-+.+...... . +..-
T Consensus 189 Vy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l---~-rHNL 264 (557)
T KOG3785|consen 189 VYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYL---C-RHNL 264 (557)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHH---H-HcCe
Confidence 468999999999999999999999999875332 2222222222211111111111100 0 0000
Q ss_pred ---ccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC-------
Q 003035 620 ---VDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGH------- 689 (855)
Q Consensus 620 ---~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~------- 689 (855)
..--+++.++-.+++.- +.++..+...++++|+..+|....+ +++|..|.-+...|.+....|+
T Consensus 265 VvFrngEgALqVLP~L~~~I---PEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe~gSreH 338 (557)
T KOG3785|consen 265 VVFRNGEGALQVLPSLMKHI---PEARLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQETGSREH 338 (557)
T ss_pred EEEeCCccHHHhchHHHhhC---hHhhhhheeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhhcCcHHH
Confidence 01112333333333332 3345555556666666666665543 3456666555555555555554
Q ss_pred ------------------------------------HHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHH
Q 003035 690 ------------------------------------REEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQ 732 (855)
Q Consensus 690 ------------------------------------~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~ 732 (855)
+|+-+.++...-...-++ ...+++|.++...|++.+|.+.
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEel--- 415 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEEL--- 415 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHH---
Confidence 344333333333333333 4455566666666666666655
Q ss_pred HHHHHhcCCCCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 003035 733 LLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDIK-HTRAHQGLARVYYLKNELKAAYDEMTKLLEKA 810 (855)
Q Consensus 733 lle~al~~~~~~~~p~-~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~-~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~ 810 (855)
|-+.- +.++... .....|+.||...|+.+.|.+.+-+.-.-. ....+.-+|...++.+++--|-+.|...-.++
T Consensus 416 -f~~is---~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 416 -FIRIS---GPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred -Hhhhc---ChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 43332 1111111 344456666666666666666553321111 22233344555555555555555555444444
Q ss_pred c
Q 003035 811 Q 811 (855)
Q Consensus 811 p 811 (855)
|
T Consensus 492 P 492 (557)
T KOG3785|consen 492 P 492 (557)
T ss_pred C
Confidence 4
No 101
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.29 E-value=1.4e-10 Score=117.92 Aligned_cols=170 Identities=22% Similarity=0.209 Sum_probs=151.9
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC
Q 003035 626 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIER 705 (855)
Q Consensus 626 l~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p 705 (855)
...+.+....+|++..+ ...+..+...|+-+.+..+..++...+|.+.+.+..+|....+.|++.+|+..++++..+.|
T Consensus 53 ~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p 131 (257)
T COG5010 53 AAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP 131 (257)
T ss_pred HHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC
Confidence 44556667778998888 88888889999999999999998888999999998899999999999999999999999999
Q ss_pred Ch-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cH
Q 003035 706 TF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HT 780 (855)
Q Consensus 706 ~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~ 780 (855)
++ .+|..+|.+|.+.|++++|... |.+++ ++.|+ .+.+|+|..|.-.|+++.|...+..+.... +.
T Consensus 132 ~d~~~~~~lgaaldq~Gr~~~Ar~a----y~qAl-----~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~ 202 (257)
T COG5010 132 TDWEAWNLLGAALDQLGRFDEARRA----YRQAL-----ELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADS 202 (257)
T ss_pred CChhhhhHHHHHHHHccChhHHHHH----HHHHH-----HhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCch
Confidence 99 9999999999999999999999 99999 88887 899999999999999999999999988777 88
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 003035 781 RAHQGLARVYYLKNELKAAYDEMTK 805 (855)
Q Consensus 781 ~a~~~lg~~~~~~g~~~~A~~~~~k 805 (855)
.+..|++.+...+|++..|...-.+
T Consensus 203 ~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 203 RVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHHHhhcCChHHHHhhccc
Confidence 9999999999999999999776544
No 102
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.28 E-value=5.9e-10 Score=133.57 Aligned_cols=267 Identities=12% Similarity=0.038 Sum_probs=203.6
Q ss_pred HhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcc
Q 003035 509 ELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGR 587 (855)
Q Consensus 509 ~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~-~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~ 587 (855)
..+|.+..++..++..+...+++++|+..++..++..|+ ...++..|.++.+.+++.+|.-. .++..-+...
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~----- 97 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL----- 97 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc-----
Confidence 458999999999999999999999999999999999995 68888889999999998877655 5554433321
Q ss_pred cchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003035 588 VSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLAR 667 (855)
Q Consensus 588 ~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al 667 (855)
.| ...+.+.+.+...+.+..+++.+|.+|-++|+.++|.+.+++++
T Consensus 98 ---------------~~-------------------~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L 143 (906)
T PRK14720 98 ---------------KW-------------------AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLV 143 (906)
T ss_pred ---------------ch-------------------hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 00 12334455555678888899999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCH
Q 003035 668 NHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK 747 (855)
Q Consensus 668 ~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p 747 (855)
+.+|+++.++.++|..|... +.++|++++.+|+.. +.+.+++.++.+. .++.+.+..++.+.
T Consensus 144 ~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-------------~i~~kq~~~~~e~----W~k~~~~~~~d~d~ 205 (906)
T PRK14720 144 KADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR-------------FIKKKQYVGIEEI----WSKLVHYNSDDFDF 205 (906)
T ss_pred hcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-------------HHhhhcchHHHHH----HHHHHhcCcccchH
Confidence 99999999999999999999 999999999999886 4445566666666 66666333333222
Q ss_pred H-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003035 748 G-----------------QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLE 808 (855)
Q Consensus 748 ~-----------------~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~ 808 (855)
- +.+.-+=..|...+++++++..++.+|+.+ |..+.+.++.+|. +.|.. ...++..++
T Consensus 206 f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~ 282 (906)
T PRK14720 206 FLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLK 282 (906)
T ss_pred HHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHH
Confidence 1 333334477888899999999999999999 8888888888877 33333 455555554
Q ss_pred HccCCHHHHHHHhh-cCCHHHHHHHHHHHHhcCCCCcc
Q 003035 809 KAQYSASAFEKRSE-YSDREMAKNDLNMATQLDPLRTY 845 (855)
Q Consensus 809 ~~p~~~~a~~~lg~-~g~~eeA~~~~~kAl~l~P~~~~ 845 (855)
+. .++. ..++..|+..|++-+..+|.+..
T Consensus 283 ~s--------~l~~~~~~~~~~i~~fek~i~f~~G~yv 312 (906)
T PRK14720 283 MS--------DIGNNRKPVKDCIADFEKNIVFDTGNFV 312 (906)
T ss_pred Hh--------ccccCCccHHHHHHHHHHHeeecCCCEE
Confidence 32 1222 35678899999999888887643
No 103
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=6.2e-09 Score=115.76 Aligned_cols=357 Identities=17% Similarity=0.090 Sum_probs=210.5
Q ss_pred hhHhhhhcHHHHHHHHHHHHHhc--chhhhhhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHhhccCcchHHHHH
Q 003035 427 CVMFEREEYKDACYYFEAAADAG--HIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDL 504 (855)
Q Consensus 427 ~~~l~~g~~~eA~~~~~~Al~~~--~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~~~~~~~A~~~l 504 (855)
+.+...|+|++|.+...+.+... +..+..--..+.+..++++.|+.. |+.++..
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~----ikk~~~~-------------------- 75 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKL----IKKNGAL-------------------- 75 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHH----HHhcchh--------------------
Confidence 35667788888888888877763 344554444555666666666533 2222210
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhh
Q 003035 505 NYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMM 583 (855)
Q Consensus 505 ~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p-~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~ 583 (855)
+-.+.+ .+.+|-+..+.++.++|+..++ ..++ +...++++|++.+.+|+|++|+..|+.++..+.+...
T Consensus 76 ------~~~~~~-~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d 145 (652)
T KOG2376|consen 76 ------LVINSF-FFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQD 145 (652)
T ss_pred ------hhcchh-hHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH
Confidence 000111 1345668889999999999998 3344 3458899999999999999999999999887655432
Q ss_pred hhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHH-HHHHHHcCCC-ChHHHHHHHHHHHHcCCHHHHHH
Q 003035 584 FHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAV-INQMLINDPG-KSFLRFRQSLLLLRLNCQKAAMR 661 (855)
Q Consensus 584 ~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~-~~~~l~~~p~-~~~~~~~~a~~l~~~g~~~~A~~ 661 (855)
...+... + .... ++.+ ..+.+...|. .-...|..|.++...|+|.+|++
T Consensus 146 ~~~r~nl------~-a~~a----------------------~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~e 196 (652)
T KOG2376|consen 146 EERRANL------L-AVAA----------------------ALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIE 196 (652)
T ss_pred HHHHHHH------H-HHHH----------------------hhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHH
Confidence 1111100 0 0000 0000 1223333444 44578899999999999999999
Q ss_pred HHHHHHhc--------CCC-------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-----HHHHHHHHH-----
Q 003035 662 CLRLARNH--------SSS-------EHERLVYEGWILYDTGHREEALSRAEKSISIERTF-----EAFFLKAYI----- 716 (855)
Q Consensus 662 ~l~~al~~--------~p~-------~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-----~a~~~lg~~----- 716 (855)
.+++++.+ +.+ -......++.++..+|+.++|...|...++.+|.+ .+-+++-.+
T Consensus 197 lL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~ 276 (652)
T KOG2376|consen 197 LLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQN 276 (652)
T ss_pred HHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccc
Confidence 99999432 111 12245788999999999999999999998887654 111111111
Q ss_pred ----------------------------------------HHHCCCCchhHHH---------------HH--------HH
Q 003035 717 ----------------------------------------LADTNLDPESSTY---------------VI--------QL 733 (855)
Q Consensus 717 ----------------------------------------~~~~g~~~~A~~~---------------~~--------~l 733 (855)
.+..+.-+.+.+. ++ ..
T Consensus 277 ~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~ 356 (652)
T KOG2376|consen 277 YFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKK 356 (652)
T ss_pred cCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHH
Confidence 1111111111000 00 00
Q ss_pred HHHHhcC--CCCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHH--------HHHhcccHHHHHHHHH-HHHHcCCHHHH
Q 003035 734 LEEALRC--PSDGLRKG---QALNNLGSIYVECGKLDQAENCYI--------NALDIKHTRAHQGLAR-VYYLKNELKAA 799 (855)
Q Consensus 734 le~al~~--~~~~~~p~---~a~~~LG~~y~~~g~~~~A~~~~~--------kAL~~~~~~a~~~lg~-~~~~~g~~~~A 799 (855)
..++++. ...+..|. .+...++.+...+|++..|++.+. ..+++.+..+....+. .+++-++.+.|
T Consensus 357 ~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a 436 (652)
T KOG2376|consen 357 HKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSA 436 (652)
T ss_pred HhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccH
Confidence 0000000 00012222 456667777888999999999998 4445553333333333 44444555555
Q ss_pred HHHHHHHHHH-------ccCCHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCCccc
Q 003035 800 YDEMTKLLEK-------AQYSASAFEKRSE----YSDREMAKNDLNMATQLDPLRTYP 846 (855)
Q Consensus 800 ~~~~~kal~~-------~p~~~~a~~~lg~----~g~~eeA~~~~~kAl~l~P~~~~~ 846 (855)
...+.+|+.- .+.--..+...+. .|+-++|...+++.++.+|.++..
T Consensus 437 ~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~ 494 (652)
T KOG2376|consen 437 SAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDL 494 (652)
T ss_pred HHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHH
Confidence 5555555543 2222223333333 799999999999999999988754
No 104
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.26 E-value=3.1e-10 Score=135.19 Aligned_cols=145 Identities=11% Similarity=0.043 Sum_probs=136.4
Q ss_pred hHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc
Q 003035 625 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE 704 (855)
Q Consensus 625 al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~ 704 (855)
++..+.......|.++.+++.+|.+..+.|.+++|...++.++++.|++..++..++.++.+.+++++|+..++++++..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~ 150 (694)
T PRK15179 71 ALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG 150 (694)
T ss_pred hHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC
Confidence 35555666777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 003035 705 RTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK 778 (855)
Q Consensus 705 p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~ 778 (855)
|++ .+++.+|.++.+.|++++|+.. |++++ ...|+ .++.++|.++...|+.++|...|++|++..
T Consensus 151 p~~~~~~~~~a~~l~~~g~~~~A~~~----y~~~~-----~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 151 SSSAREILLEAKSWDEIGQSEQADAC----FERLS-----RQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred CCCHHHHHHHHHHHHHhcchHHHHHH----HHHHH-----hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 999 9999999999999999999999 99999 66666 999999999999999999999999999987
No 105
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.26 E-value=2.7e-10 Score=115.99 Aligned_cols=172 Identities=17% Similarity=0.119 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHH
Q 003035 656 QKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLL 734 (855)
Q Consensus 656 ~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~ll 734 (855)
...+...+-.....+|++.++ ..++..++..|+-+.+..+..++.-.+|++ .....+|......|++.+|+.. +
T Consensus 49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~----~ 123 (257)
T COG5010 49 TQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSV----L 123 (257)
T ss_pred hhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHH----H
Confidence 344666777778889999999 999999999999999999999999999999 8888899999999999999999 9
Q ss_pred HHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 003035 735 EEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKA 810 (855)
Q Consensus 735 e~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~ 810 (855)
+++. .+.|+ .+|+.+|.+|.+.|+.++|...|.+++++. ++.+..|+|..+...|+++.|..++..+....
T Consensus 124 rkA~-----~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 124 RKAA-----RLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHh-----ccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 9999 88888 999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred cCCHHHHHHHhh----cCCHHHHHHHHHHHH
Q 003035 811 QYSASAFEKRSE----YSDREMAKNDLNMAT 837 (855)
Q Consensus 811 p~~~~a~~~lg~----~g~~eeA~~~~~kAl 837 (855)
+.+..+..+|+. +|++++|+....+=+
T Consensus 199 ~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 199 AADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred CCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 989999999888 999999988765433
No 106
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.25 E-value=2.9e-10 Score=135.47 Aligned_cols=154 Identities=16% Similarity=0.043 Sum_probs=139.6
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHH
Q 003035 659 AMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEA 737 (855)
Q Consensus 659 A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~a 737 (855)
++..+.......|++++++++||.+....|++++|...++.++++.|++ .++.+++.++.+.+++++|... ++++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~----~~~~ 146 (694)
T PRK15179 71 ALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAE----IELY 146 (694)
T ss_pred hHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHH----HHHH
Confidence 3333333344578899999999999999999999999999999999999 9999999999999999999999 9999
Q ss_pred hcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCC
Q 003035 738 LRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS 813 (855)
Q Consensus 738 l~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~ 813 (855)
+ ...|+ .+++.+|.++.+.|++++|+.+|++++..+ ++.++.++|.++...|+.++|...|+++++...+-
T Consensus 147 l-----~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 147 F-----SGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDG 221 (694)
T ss_pred h-----hcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence 9 88888 999999999999999999999999999866 79999999999999999999999999999998776
Q ss_pred HHHHHHHh
Q 003035 814 ASAFEKRS 821 (855)
Q Consensus 814 ~~a~~~lg 821 (855)
...|..+.
T Consensus 222 ~~~~~~~~ 229 (694)
T PRK15179 222 ARKLTRRL 229 (694)
T ss_pred hHHHHHHH
Confidence 66655543
No 107
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=5.6e-10 Score=112.49 Aligned_cols=177 Identities=21% Similarity=0.156 Sum_probs=156.8
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHH
Q 003035 637 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAY 715 (855)
Q Consensus 637 p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~ 715 (855)
|+...++-....+.+..|+.+-|..+++......|+...+-...|..+..+|++++|+++|+..++-+|.+ .++-..-.
T Consensus 49 ~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlA 128 (289)
T KOG3060|consen 49 DEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLA 128 (289)
T ss_pred chHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHH
Confidence 44444455556677889999999999999999999999999999999999999999999999999999999 88888888
Q ss_pred HHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHH
Q 003035 716 ILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYY 791 (855)
Q Consensus 716 ~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~ 791 (855)
+...+|+.-+|++. +...+ +..++ ++|..++.+|...|++++|.-||++.+=+. ++..+..+|.+++
T Consensus 129 ilka~GK~l~aIk~----ln~YL-----~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Y 199 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKE----LNEYL-----DKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLY 199 (289)
T ss_pred HHHHcCCcHHHHHH----HHHHH-----HHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 88999999999999 77777 55555 999999999999999999999999999999 8888889999999
Q ss_pred HcC---CHHHHHHHHHHHHHHccCCHHHHHHHhh
Q 003035 792 LKN---ELKAAYDEMTKLLEKAQYSASAFEKRSE 822 (855)
Q Consensus 792 ~~g---~~~~A~~~~~kal~~~p~~~~a~~~lg~ 822 (855)
.+| ++.-|.++|.++++++|.+..+++.+-.
T Consensus 200 t~gg~eN~~~arkyy~~alkl~~~~~ral~GI~l 233 (289)
T KOG3060|consen 200 TQGGAENLELARKYYERALKLNPKNLRALFGIYL 233 (289)
T ss_pred HHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHH
Confidence 988 7788999999999999988777765544
No 108
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.23 E-value=1.3e-10 Score=118.54 Aligned_cols=117 Identities=18% Similarity=0.186 Sum_probs=79.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHH-HHCCC--CchhHH
Q 003035 653 LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYIL-ADTNL--DPESST 728 (855)
Q Consensus 653 ~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~-~~~g~--~~~A~~ 728 (855)
.++.++++..++++++.+|++++.|+.+|.++...|++++|+..|+++++++|++ .++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 3455666677777777777777777777777777777777777777777777777 7777777654 45555 366666
Q ss_pred HHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 003035 729 YVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK 778 (855)
Q Consensus 729 ~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~ 778 (855)
. +++++ ..+|+ .+++++|..+...|++++|+.+|+++++..
T Consensus 132 ~----l~~al-----~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 132 M----IDKAL-----ALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred H----HHHHH-----HhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 6 77776 66665 666666666666666666666666666665
No 109
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.23 E-value=5.7e-07 Score=97.71 Aligned_cols=390 Identities=13% Similarity=0.035 Sum_probs=287.8
Q ss_pred HHHHHhhhhHhhhhcHHHHHHHHHHHHHhcc--hhhhhhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHH----hh
Q 003035 420 LALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQER----SL 493 (855)
Q Consensus 420 ~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~--~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~----~~ 493 (855)
..|...|.--..++++..|...|++||+.++ ...+..-+.+-.+.++..-|....++++..-|.....+..- ..
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~ 153 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEM 153 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 4567788888999999999999999998764 34566777888888888999999999999999653332211 12
Q ss_pred ccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCCCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 003035 494 YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLA 573 (855)
Q Consensus 494 ~~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~~~~l~lra~~y~~~gd~~~A~~~~~~ 573 (855)
+++...|-+.|++-++..|+- .+|.--...-+..+..+-|.++|++-+-..|....+.--|.+-.+-|+...|...|..
T Consensus 154 LgNi~gaRqiferW~~w~P~e-qaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEWEPDE-QAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred hcccHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 356678999999999999974 4555555566678889999999999998889888888778899999999999999999
Q ss_pred HHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHH--H
Q 003035 574 LLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLL--L 651 (855)
Q Consensus 574 aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l--~ 651 (855)
++..--+.. ....+-.....++.. .+-+++ +-.++.-+|+.-|.+-..-+..+.+. -
T Consensus 233 Aie~~~~d~----------~~e~lfvaFA~fEe~---qkE~ER--------ar~iykyAld~~pk~raeeL~k~~~~fEK 291 (677)
T KOG1915|consen 233 AIEFLGDDE----------EAEILFVAFAEFEER---QKEYER--------ARFIYKYALDHIPKGRAEELYKKYTAFEK 291 (677)
T ss_pred HHHHhhhHH----------HHHHHHHHHHHHHHH---HHHHHH--------HHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 986433321 111111111111110 011111 12234556666676632222222222 2
Q ss_pred HcCC---HHHHHH-----HHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh--------HHHHHHHH
Q 003035 652 RLNC---QKAAMR-----CLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF--------EAFFLKAY 715 (855)
Q Consensus 652 ~~g~---~~~A~~-----~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~--------~a~~~lg~ 715 (855)
+-|+ .++++- .|++.+..+|.+.++|+..-.+....|+.+.-.+.|++||.--|.. ..|.-+-+
T Consensus 292 qfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinY 371 (677)
T KOG1915|consen 292 QFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINY 371 (677)
T ss_pred HhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHH
Confidence 2233 444443 4788899999999999999999999999999999999999987653 22222223
Q ss_pred HH---HHCCCCchhHHHHHHHHHHHhcCCCCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-cHHHHHH
Q 003035 716 IL---ADTNLDPESSTYVIQLLEEALRCPSDGLRKG------QALNNLGSIYVECGKLDQAENCYINALDIK-HTRAHQG 785 (855)
Q Consensus 716 ~~---~~~g~~~~A~~~~~~lle~al~~~~~~~~p~------~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~-~~~a~~~ 785 (855)
++ ....+.+.+.+. |+..| ++-|. .+|...+.....+.++..|.+.+-.||-.- .....-.
T Consensus 372 alyeEle~ed~ertr~v----yq~~l-----~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~ 442 (677)
T KOG1915|consen 372 ALYEELEAEDVERTRQV----YQACL-----DLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKG 442 (677)
T ss_pred HHHHHHHhhhHHHHHHH----HHHHH-----hhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHH
Confidence 32 335666666677 99999 66665 889899999999999999999999999887 6666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh----cCCHHHHHHHHHHHHhcC
Q 003035 786 LARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLD 840 (855)
Q Consensus 786 lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~----~g~~eeA~~~~~kAl~l~ 840 (855)
+-.+-..+++++.....|++-++-.|.+..+|...|. +|+.+.|...|+-|+...
T Consensus 443 YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 443 YIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 6667777889999999999999999999999999999 999999999999999864
No 110
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.23 E-value=3.5e-10 Score=115.35 Aligned_cols=149 Identities=15% Similarity=0.070 Sum_probs=125.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCch
Q 003035 647 SLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPE 725 (855)
Q Consensus 647 a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~ 725 (855)
...|+..|+++......+.. .+|.. -+...++.++++..++++++.+|++ ++|+.+|.+|...|++++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~--~~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRL--ADPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHcchHHHHHHHHHHH--hCccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
Confidence 34678888887765444222 12221 1113677899999999999999999 999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHH-HHcCC--HHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHH
Q 003035 726 SSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIY-VECGK--LDQAENCYINALDIK--HTRAHQGLARVYYLKNELKA 798 (855)
Q Consensus 726 A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y-~~~g~--~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~ 798 (855)
|+.. |++++ .+.|+ +++.++|.++ ...|+ +++|.+.++++++.+ ++.+++++|..+..+|++++
T Consensus 92 A~~a----~~~Al-----~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~ 162 (198)
T PRK10370 92 ALLA----YRQAL-----QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQ 162 (198)
T ss_pred HHHH----HHHHH-----HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHH
Confidence 9999 99999 88887 9999999974 77787 599999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHccCCHH
Q 003035 799 AYDEMTKLLEKAQYSAS 815 (855)
Q Consensus 799 A~~~~~kal~~~p~~~~ 815 (855)
|+..|+++++..|.+.+
T Consensus 163 Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 163 AIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHHHhhCCCCcc
Confidence 99999999999887543
No 111
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.22 E-value=1.6e-10 Score=122.47 Aligned_cols=266 Identities=15% Similarity=0.098 Sum_probs=187.0
Q ss_pred HHHHHHhCCHHHHHHHHHHHHccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHh
Q 003035 522 AVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHV 601 (855)
Q Consensus 522 a~~~~~~~~~~~A~~~~~k~l~~~p~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~ 601 (855)
|.-+.+.|++...+..|+.++.... +-+..+..||.++|+----+.+|.++++..--+.. +..++....
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGT--eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDlt---------lar~lgdkl 92 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGT--EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLT---------LARLLGDKL 92 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcc--hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHH---------HHHHhcchh
Confidence 5578899999999999999997654 22333445666666655555666666643322111 111111110
Q ss_pred hccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CcHH
Q 003035 602 RSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS------SEHE 675 (855)
Q Consensus 602 ~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p------~~~~ 675 (855)
+ .+..--.+|..+--.|.+++|+.+..+-+.+.. ....
T Consensus 93 G------------------------------------EAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~R 136 (639)
T KOG1130|consen 93 G------------------------------------EAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESR 136 (639)
T ss_pred c------------------------------------cccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhH
Confidence 0 011112356667778889999887776655432 2456
Q ss_pred HHHHHHHHHHHCCC--------------------HHHHHHHHHHHHhccCCh-------HHHHHHHHHHHHCCCCchhHH
Q 003035 676 RLVYEGWILYDTGH--------------------REEALSRAEKSISIERTF-------EAFFLKAYILADTNLDPESST 728 (855)
Q Consensus 676 ~~~~lg~~~~~~g~--------------------~~eAl~~~~kal~~~p~~-------~a~~~lg~~~~~~g~~~~A~~ 728 (855)
++|++|.+|-..|+ ++.|.+.|..-+++..+. .++-++|..|+-.|+|+.|+.
T Consensus 137 AlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~ 216 (639)
T KOG1130|consen 137 ALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIH 216 (639)
T ss_pred HHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHH
Confidence 78999999988765 445677777777664432 567789999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--------cHHHHHHHHHHHHHcCCH
Q 003035 729 YVIQLLEEALRCPSDGLRKG----QALNNLGSIYVECGKLDQAENCYINALDIK--------HTRAHQGLARVYYLKNEL 796 (855)
Q Consensus 729 ~~~~lle~al~~~~~~~~p~----~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--------~~~a~~~lg~~~~~~g~~ 796 (855)
...+.++-+- +.... .++.|||.++.-.|+++.|+++|++++.+. ..+..+.||..|....++
T Consensus 217 ~H~~RL~ia~-----efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~ 291 (639)
T KOG1130|consen 217 FHKLRLEIAQ-----EFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEV 291 (639)
T ss_pred HHHHHHHHHH-----HhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHH
Confidence 8555555444 22211 899999999999999999999999987654 466789999999999999
Q ss_pred HHHHHHHHHHHHHccC------CHHHHHHHhh----cCCHHHHHHHHHHHHhc
Q 003035 797 KAAYDEMTKLLEKAQY------SASAFEKRSE----YSDREMAKNDLNMATQL 839 (855)
Q Consensus 797 ~~A~~~~~kal~~~p~------~~~a~~~lg~----~g~~eeA~~~~~kAl~l 839 (855)
.+|+.++++=+.+... ...+++.||. .|..++|+.+.++.+++
T Consensus 292 ~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 292 QKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 9999999998877542 3567888888 89999999988887765
No 112
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.19 E-value=2e-06 Score=96.70 Aligned_cols=399 Identities=13% Similarity=0.036 Sum_probs=236.5
Q ss_pred HHHHHHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhc----------chhhhhhHHHHHHHhC------
Q 003035 402 VMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAG----------HIYSLAGLARAKYKVG------ 465 (855)
Q Consensus 402 ~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~----------~~~a~~~la~~~~~~g------ 465 (855)
-+....-+..-+|.+ +..|..||+.|.+.|.|+.|...|++++..- +.++.+.-..+..+.+
T Consensus 233 daiiR~gi~rftDq~--g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~ 310 (835)
T KOG2047|consen 233 DAIIRGGIRRFTDQL--GFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEES 310 (835)
T ss_pred HHHHHhhcccCcHHH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 345555566666654 5678899999999999999999999998631 1122222222222211
Q ss_pred -------ChHHHHHHHHhHHHcCCCchHHHHHHhhccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHH
Q 003035 466 -------QQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEI 538 (855)
Q Consensus 466 -------~~~~A~~~l~~~i~~~p~~~~~y~~~~~~~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~ 538 (855)
+.+-....+++++...|- -.=.-++..+|++..-|..|.. +..|+..+-+..|
T Consensus 311 ~n~ed~~dl~~~~a~~e~lm~rr~~------------------~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~ty 370 (835)
T KOG2047|consen 311 GNEEDDVDLELHMARFESLMNRRPL------------------LLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTY 370 (835)
T ss_pred cChhhhhhHHHHHHHHHHHHhccch------------------HHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHH
Confidence 001111112222221110 0012345567888887777744 4577888888888
Q ss_pred HHHHc-cCCC-----H-hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhh---ccChhh
Q 003035 539 DRIIV-FKLS-----V-DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVR---SWSPAD 608 (855)
Q Consensus 539 ~k~l~-~~p~-----~-~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~---~~~~a~ 608 (855)
.+++. .+|. + ..+...|.+|...|+.+.|...+++++.-.=... +.+....-...+ .-...+
T Consensus 371 teAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v--------~dLa~vw~~waemElrh~~~~ 442 (835)
T KOG2047|consen 371 TEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTV--------EDLAEVWCAWAEMELRHENFE 442 (835)
T ss_pred HHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccch--------HHHHHHHHHHHHHHHhhhhHH
Confidence 88875 5553 2 3344567888888888888888888876432211 111111000000 000011
Q ss_pred hHHHHhhhcccccccchHHHHHHHHHcCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 003035 609 CWIKLYDRWSSVDDIGSLAVINQMLINDPG------KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGW 682 (855)
Q Consensus 609 ~~~~~~~~~~~~~d~~al~~~~~~l~~~p~------~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~ 682 (855)
..+.+..+...+.....+..+ -...|. ...+|...+.+.-..|-++.-...|++.+++.--.|....+.|.
T Consensus 443 ~Al~lm~~A~~vP~~~~~~~y---d~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAm 519 (835)
T KOG2047|consen 443 AALKLMRRATHVPTNPELEYY---DNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAM 519 (835)
T ss_pred HHHHHHHhhhcCCCchhhhhh---cCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 111111111111100000000 000111 12344555666667888999999999999998888999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHhccCC--h-HHHHH---HHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH----HHHH
Q 003035 683 ILYDTGHREEALSRAEKSISIERT--F-EAFFL---KAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG----QALN 752 (855)
Q Consensus 683 ~~~~~g~~~eAl~~~~kal~~~p~--~-~a~~~---lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~----~a~~ 752 (855)
.+.....+++|.+.|++.+.+++- . +.|.. ....-+.....+.|... |++|+ +.-|. .+|.
T Consensus 520 fLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdL----FEqaL-----~~Cpp~~aKtiyL 590 (835)
T KOG2047|consen 520 FLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDL----FEQAL-----DGCPPEHAKTIYL 590 (835)
T ss_pred HHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHH----HHHHH-----hcCCHHHHHHHHH
Confidence 999999999999999999999753 2 55543 33333333445556666 99999 44443 6777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHccCCHHH--HHHHhh----
Q 003035 753 NLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKN----ELKAAYDEMTKLLEKAQYSASA--FEKRSE---- 822 (855)
Q Consensus 753 ~LG~~y~~~g~~~~A~~~~~kAL~~~~~~a~~~lg~~~~~~g----~~~~A~~~~~kal~~~p~~~~a--~~~lg~---- 822 (855)
..+..-.+.|.-..|++.|++|-..-+..-.+.+=.+|.++- -...-.+.|++||+.-|+.-.- -...++
T Consensus 591 lYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtk 670 (835)
T KOG2047|consen 591 LYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETK 670 (835)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhh
Confidence 778888888999999999999876553332233323333221 1234567899999998875322 222333
Q ss_pred cCCHHHHHHHHHHHHhc-CCC
Q 003035 823 YSDREMAKNDLNMATQL-DPL 842 (855)
Q Consensus 823 ~g~~eeA~~~~~kAl~l-~P~ 842 (855)
.|..+.|+..|.-.-++ ||.
T Consensus 671 lGEidRARaIya~~sq~~dPr 691 (835)
T KOG2047|consen 671 LGEIDRARAIYAHGSQICDPR 691 (835)
T ss_pred hhhHHHHHHHHHhhhhcCCCc
Confidence 89999999999887776 444
No 113
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.19 E-value=3.6e-08 Score=124.24 Aligned_cols=200 Identities=17% Similarity=0.082 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC----Ch--
Q 003035 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSS--------EHERLVYEGWILYDTGHREEALSRAEKSISIER----TF-- 707 (855)
Q Consensus 642 ~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~--------~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p----~~-- 707 (855)
.+..+|.++...|++++|...++++++.... ....+..+|.+++..|++++|...+++++.... ..
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 612 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQL 612 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHH
Confidence 3456677888899999999998888875221 223455778888889999999999988877532 22
Q ss_pred HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHHH--H--HHHHHHHHHHcCCHHHHHHHHHHHHhcc--cH-
Q 003035 708 EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQ--A--LNNLGSIYVECGKLDQAENCYINALDIK--HT- 780 (855)
Q Consensus 708 ~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~~--a--~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~- 780 (855)
.++..+|.++...|++++|... ++++............ . .......+...|+.+.|...+....... ..
T Consensus 613 ~~~~~la~~~~~~G~~~~A~~~----l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 688 (903)
T PRK04841 613 QCLAMLAKISLARGDLDNARRY----LNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNH 688 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHH----HHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccch
Confidence 5566788888899999999888 7777522111100111 1 1112244455788888888876655433 11
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccC------CHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCCcc
Q 003035 781 ---RAHQGLARVYYLKNELKAAYDEMTKLLEKAQY------SASAFEKRSE----YSDREMAKNDLNMATQLDPLRTY 845 (855)
Q Consensus 781 ---~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~------~~~a~~~lg~----~g~~eeA~~~~~kAl~l~P~~~~ 845 (855)
..+..+|.++..+|++++|...+++++..... .+.++..+|. .|+.++|...+.+|+++....++
T Consensus 689 ~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 689 FLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 22457888888888888888888888876322 2234455555 78888888888888888766665
No 114
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.19 E-value=6.3e-10 Score=133.31 Aligned_cols=188 Identities=13% Similarity=-0.019 Sum_probs=163.6
Q ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----------
Q 003035 635 NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI----------- 703 (855)
Q Consensus 635 ~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~----------- 703 (855)
.+|.+..++..+...+...|++++|++.++.+++.+|+....++.+|.+++..+++.+|... .++..
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE 103 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence 46889999999999999999999999999999999999999999999999999887776555 44443
Q ss_pred --------cCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHH
Q 003035 704 --------ERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYI 772 (855)
Q Consensus 704 --------~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~ 772 (855)
.+++ .+++.+|.+|.++|++++|... |++++ ..+|+ .+++++|+.|... ++++|++++.
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~----yer~L-----~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGV----WERLV-----KADRDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHH----HHHHH-----hcCcccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 3444 7899999999999999999999 99999 88888 9999999999999 9999999999
Q ss_pred HHHhcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHH--------h------------h----cCCHHH
Q 003035 773 NALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKR--------S------------E----YSDREM 828 (855)
Q Consensus 773 kAL~~~~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~l--------g------------~----~g~~ee 828 (855)
+|+.. +...+++.++.+.+.+.++.+|++.+...++ | . .+++++
T Consensus 174 KAV~~------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~ 241 (906)
T PRK14720 174 KAIYR------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDE 241 (906)
T ss_pred HHHHH------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhH
Confidence 99874 5556689999999999999999987763332 2 1 678899
Q ss_pred HHHHHHHHHhcCCCCccc
Q 003035 829 AKNDLNMATQLDPLRTYP 846 (855)
Q Consensus 829 A~~~~~kAl~l~P~~~~~ 846 (855)
++..++.+|+.+|++.++
T Consensus 242 ~i~iLK~iL~~~~~n~~a 259 (906)
T PRK14720 242 VIYILKKILEHDNKNNKA 259 (906)
T ss_pred HHHHHHHHHhcCCcchhh
Confidence 999999999999999776
No 115
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.17 E-value=4.5e-08 Score=123.36 Aligned_cols=167 Identities=15% Similarity=0.088 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh----HHHH-
Q 003035 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSS-----SEHERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFF- 711 (855)
Q Consensus 642 ~~~~~a~~l~~~g~~~~A~~~l~~al~~~p-----~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~----~a~~- 711 (855)
.+..+|.++...|++++|...+++++.... .....+..+|.++...|++++|...++++..+.+.. ....
T Consensus 575 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 654 (903)
T PRK04841 575 LLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIAN 654 (903)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhH
Confidence 445678888999999999999999987532 134556678999999999999999999998764322 1111
Q ss_pred ---HHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--------
Q 003035 712 ---LKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK--GQALNNLGSIYVECGKLDQAENCYINALDIK-------- 778 (855)
Q Consensus 712 ---~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p--~~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~-------- 778 (855)
.....+...|+.+.|... +.+..... ..... ...+.++|.++...|++++|...+++++...
T Consensus 655 ~~~~~~~~~~~~g~~~~A~~~----l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~ 729 (903)
T PRK04841 655 ADKVRLIYWQMTGDKEAAANW----LRQAPKPE-FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSD 729 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHH----HHhcCCCC-CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHH
Confidence 122444557888888887 76665210 00000 1346789999999999999999999999864
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCC
Q 003035 779 HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS 813 (855)
Q Consensus 779 ~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~ 813 (855)
...++..+|.++...|+.++|...+.+++++....
T Consensus 730 ~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 730 LNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 24578899999999999999999999999987654
No 116
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.17 E-value=1.6e-08 Score=116.53 Aligned_cols=316 Identities=14% Similarity=0.070 Sum_probs=188.6
Q ss_pred HHHHHHhhhhHhhhhcHHHHHHHHHHHHHh--cchhhhhhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHhhccC
Q 003035 419 MLALHQLGCVMFEREEYKDACYYFEAAADA--GHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNL 496 (855)
Q Consensus 419 ~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~--~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~~~~ 496 (855)
.+++.....++.+.|++++|++.+++.... +....+-..|.++..+|+.++|...+..+|..+|+|...|......
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~-- 81 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEA-- 81 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHH--
Confidence 356667788999999999999999886543 3344566789999999999999999999999999987766433221
Q ss_pred cchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCCCHhHHHHHHHHHHHcCCHH-HHHHHHHHHH
Q 003035 497 GREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYE-SALRDTLALL 575 (855)
Q Consensus 497 ~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~~~~l~lra~~y~~~gd~~-~A~~~~~~aL 575 (855)
.-++.. ......+.-.+.|++.....|...+.......+..-.++. .+..+++..|
T Consensus 82 -----------~g~~~~------------~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l 138 (517)
T PF12569_consen 82 -----------LGLQLQ------------LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQL 138 (517)
T ss_pred -----------Hhhhcc------------cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHH
Confidence 100000 0011222223333333333332111111000000001111 1112222222
Q ss_pred hcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhc-ccccccchHHHHHHHHHcCCCCh--HHHHHHHHHHHH
Q 003035 576 ALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRW-SSVDDIGSLAVINQMLINDPGKS--FLRFRQSLLLLR 652 (855)
Q Consensus 576 ~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~-~~~~d~~al~~~~~~l~~~p~~~--~~~~~~a~~l~~ 652 (855)
... ...+...+.....+.........+.... .+....+...... .....|... .+++.+|..+..
T Consensus 139 ~Kg-----------vPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~-~~~~~~p~~~lw~~~~lAqhyd~ 206 (517)
T PF12569_consen 139 RKG-----------VPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGD-DEEKEPPSTLLWTLYFLAQHYDY 206 (517)
T ss_pred hcC-----------CchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCcc-ccccCCchHHHHHHHHHHHHHHH
Confidence 110 0000001111111111111111111000 0000000000000 001122222 456788999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHH
Q 003035 653 LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVI 731 (855)
Q Consensus 653 ~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~ 731 (855)
.|++++|+.++++++++.|..++.++..|.++-..|++++|...++.|-++++.+ ..-...+..+.+.|+.++|.+.
T Consensus 207 ~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~-- 284 (517)
T PF12569_consen 207 LGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKT-- 284 (517)
T ss_pred hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHH--
Confidence 9999999999999999999999999999999999999999999999999999999 6666667778889999999998
Q ss_pred HHHHHHhcCCCCCCCHH-------HHH--HHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 003035 732 QLLEEALRCPSDGLRKG-------QAL--NNLGSIYVECGKLDQAENCYINALDIK 778 (855)
Q Consensus 732 ~lle~al~~~~~~~~p~-------~a~--~~LG~~y~~~g~~~~A~~~~~kAL~~~ 778 (855)
+....+... +|. -.| ..-|.+|...|++..|++.|..+.+..
T Consensus 285 --~~~Ftr~~~---~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 285 --ASLFTREDV---DPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred --HHhhcCCCC---CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 665552221 221 233 456999999999999999999998764
No 117
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.12 E-value=4.5e-10 Score=107.05 Aligned_cols=112 Identities=12% Similarity=0.032 Sum_probs=106.8
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh
Q 003035 628 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (855)
Q Consensus 628 ~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~ 707 (855)
.+.+++..+|.+....+.+|..+...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..+++++..+|++
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH
Q 003035 708 -EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG 748 (855)
Q Consensus 708 -~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~ 748 (855)
..++.+|.++...|++++|+.. +++++ ...|+
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~----~~~al-----~~~p~ 117 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKA----LDLAI-----EICGE 117 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHH----HHHHH-----Hhccc
Confidence 9999999999999999999999 99999 66665
No 118
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.11 E-value=6.9e-07 Score=100.35 Aligned_cols=410 Identities=10% Similarity=-0.023 Sum_probs=248.7
Q ss_pred HHhhhhHhhhhcHHHHHHHHHHHHHhc----chhhhhhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHh-hccCc
Q 003035 423 HQLGCVMFEREEYKDACYYFEAAADAG----HIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERS-LYNLG 497 (855)
Q Consensus 423 ~~LG~~~l~~g~~~eA~~~~~~Al~~~----~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~-~~~~~ 497 (855)
.....++.+||+...-...|..||..- |...+-..-++....|-...++..|++.++..|....-|.... .-...
T Consensus 106 l~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~ 185 (835)
T KOG2047|consen 106 LDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRL 185 (835)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccch
Confidence 344455566666666666666666432 2222222233333444455566666666666665543332211 11222
Q ss_pred chHHHHHHHHHHhC-------CCCchhHHHHHHHHHHhCCHHH---HHHHHHHHHccCCCH--hHHHHHHHHHHHcCCHH
Q 003035 498 REKIVDLNYASELD-------PTLSFPYKYRAVAKMEEGQIRA---AISEIDRIIVFKLSV--DCLELRAWLFIAADDYE 565 (855)
Q Consensus 498 ~~A~~~l~~a~~ld-------P~~~~a~~~~a~~~~~~~~~~~---A~~~~~k~l~~~p~~--~~l~lra~~y~~~gd~~ 565 (855)
++|.+.|.+.+..| |++...|..+-....+.-+.-. --+.+...+..-++- -.+..+|..|...|.++
T Consensus 186 ~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~e 265 (835)
T KOG2047|consen 186 DEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFE 265 (835)
T ss_pred HHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhH
Confidence 44555554444332 2223333333222222111111 112233334333331 23445688888888888
Q ss_pred HHHHHHHHHHhcCCchhhhhc------ccchhHHHHHHHHHhhcc-Chh-----hhHHHHhhhcccccccchHHHHHHHH
Q 003035 566 SALRDTLALLALESNYMMFHG------RVSGDHLVKLLNHHVRSW-SPA-----DCWIKLYDRWSSVDDIGSLAVINQML 633 (855)
Q Consensus 566 ~A~~~~~~aL~~~P~~~~~~~------~~~~~~l~~ll~~~~~~~-~~a-----~~~~~~~~~~~~~~d~~al~~~~~~l 633 (855)
.|...|++++..--....+.. ...-..+...+.-..+.. +.. ++-+.-++...... -+-.-.-++
T Consensus 266 karDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr---~~~lNsVlL 342 (835)
T KOG2047|consen 266 KARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR---PLLLNSVLL 342 (835)
T ss_pred HHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc---chHHHHHHH
Confidence 888888888864322111100 000000000011000000 000 00011111111000 011123467
Q ss_pred HcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCC-----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh
Q 003035 634 INDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARN-HSSS-----EHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (855)
Q Consensus 634 ~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~-~~p~-----~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~ 707 (855)
..+|++...+.+.. -+..|+..+-+..|..|++ .+|. ....|...|..|.+.|+.+.|...|++++..+-..
T Consensus 343 RQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~ 420 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKT 420 (835)
T ss_pred hcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc
Confidence 78888887777654 4567888899999988875 4664 45678999999999999999999999999986432
Q ss_pred -----HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCC-------CHH--------HHHHHHHHHHHHcCCHHHH
Q 003035 708 -----EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGL-------RKG--------QALNNLGSIYVECGKLDQA 767 (855)
Q Consensus 708 -----~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~-------~p~--------~a~~~LG~~y~~~g~~~~A 767 (855)
..|..-|..-.+..+++.|.+. +++|...|.... .|- .+|..+++.....|-++.-
T Consensus 421 v~dLa~vw~~waemElrh~~~~~Al~l----m~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfest 496 (835)
T KOG2047|consen 421 VEDLAEVWCAWAEMELRHENFEAALKL----MRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFEST 496 (835)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHH----HHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHH
Confidence 7788888888889999999998 999987765422 121 6888889999999999999
Q ss_pred HHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--cCCHHHHHHHhh-------cCCHHHHHHHHHHH
Q 003035 768 ENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKA--QYSASAFEKRSE-------YSDREMAKNDLNMA 836 (855)
Q Consensus 768 ~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~--p~~~~a~~~lg~-------~g~~eeA~~~~~kA 836 (855)
...|++.+++. -|.+-.|+|..+....-+++|.+.|++.|.+. |+--+.|+..-. .-..+.|+..|++|
T Consensus 497 k~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 497 KAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 99999999999 89999999999999999999999999999986 444555555433 45789999999999
Q ss_pred HhcCC
Q 003035 837 TQLDP 841 (855)
Q Consensus 837 l~l~P 841 (855)
++.=|
T Consensus 577 L~~Cp 581 (835)
T KOG2047|consen 577 LDGCP 581 (835)
T ss_pred HhcCC
Confidence 99877
No 119
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.09 E-value=9.2e-10 Score=104.89 Aligned_cols=108 Identities=16% Similarity=0.070 Sum_probs=55.6
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcC
Q 003035 662 CLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRC 740 (855)
Q Consensus 662 ~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~ 740 (855)
.|++++..+|++..+.+.+|..+...|++++|+..++++++.+|++ .+++.+|.++...|++++|... +++++
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~----~~~~~-- 78 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDA----YALAA-- 78 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHH----HHHHH--
Confidence 4555555555555555555555555555555555555555555555 5555555555555555555555 55554
Q ss_pred CCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 003035 741 PSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK 778 (855)
Q Consensus 741 ~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~ 778 (855)
...|. ..+.++|.+|...|++++|+..|+++++.+
T Consensus 79 ---~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 79 ---ALDPDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred ---hcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 33333 344444444444444444444444444433
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.05 E-value=3.5e-09 Score=120.35 Aligned_cols=229 Identities=13% Similarity=0.086 Sum_probs=171.5
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHH
Q 003035 517 PYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKL 596 (855)
Q Consensus 517 a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~l 596 (855)
.-..+|..++..|-...|+.++++.- .+.....+|...|+..+|.....+-++.+|+.+. +.-++
T Consensus 400 ~q~~laell~slGitksAl~I~Erle-------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~l-yc~LG------- 464 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE-------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRL-YCLLG------- 464 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH-------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchh-HHHhh-------
Confidence 44567889999999999999988753 3334467888899999999999999986666432 11110
Q ss_pred HHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 003035 597 LNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIND-PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHE 675 (855)
Q Consensus 597 l~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~ 675 (855)
... ... ....++.+.. ..++.+....|...++.+++.++.+.++..++++|-...
T Consensus 465 --Dv~---~d~-------------------s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~ 520 (777)
T KOG1128|consen 465 --DVL---HDP-------------------SLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLG 520 (777)
T ss_pred --hhc---cCh-------------------HHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchh
Confidence 000 011 1122222222 123345566677777889999999999999999999999
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 003035 676 RLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNL 754 (855)
Q Consensus 676 ~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~~a~~~L 754 (855)
.||.+|.+....++++.|...|...+.++|++ ++|++++.+|...++..+|... +++|++|..+ +=++|-|.
T Consensus 521 ~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~----l~EAlKcn~~---~w~iWENy 593 (777)
T KOG1128|consen 521 TWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRK----LKEALKCNYQ---HWQIWENY 593 (777)
T ss_pred HHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHH----HHHHhhcCCC---CCeeeech
Confidence 99999999999999999999999999999999 9999999999999999999999 9999955421 11788888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcc----cHHHHHHHHHHHH
Q 003035 755 GSIYVECGKLDQAENCYINALDIK----HTRAHQGLARVYY 791 (855)
Q Consensus 755 G~~y~~~g~~~~A~~~~~kAL~~~----~~~a~~~lg~~~~ 791 (855)
-.+..+.|.+++|++.|.+.+.+. +..+..-+.....
T Consensus 594 mlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 594 MLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred hhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHH
Confidence 888899999999999999988876 5555555544433
No 121
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.04 E-value=8.2e-07 Score=95.39 Aligned_cols=320 Identities=14% Similarity=0.053 Sum_probs=199.5
Q ss_pred hhhhhhcCChhHHhhhcCchhHHHHHhhchhhHHHHHHHHHhhcccccchhhHHHHHHHHhhchhhHHHHHHHHHHhhhh
Q 003035 349 RELPSSLYNPKVMKIFCSSEATERLANVGHASFLLYYFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCV 428 (855)
Q Consensus 349 ~~~~~v~~~~~f~~ll~~~~~~~r~~~~~~~~f~l~~~La~~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~ 428 (855)
.-+..++..+.-..-+-+...+.|..+ ...=|-+.+.+|+ +..|.+++.+..+-.+.+ ..++..=+..
T Consensus 60 ~~l~~v~~~~~~~~~w~~~rKrrra~~--------~~~egl~~l~eG~-~~qAEkl~~rnae~~e~p---~l~~l~aA~A 127 (400)
T COG3071 60 WLLRRVLRTPAHTRGWFSRRKRRRARK--------ALNEGLLKLFEGD-FQQAEKLLRRNAEHGEQP---VLAYLLAAEA 127 (400)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHH--------HHHHHHHHHhcCc-HHHHHHHHHHhhhcCcch---HHHHHHHHHH
Confidence 344556666766666655555444431 2223455677888 999999988876654443 4556666777
Q ss_pred HhhhhcHHHHHHHHHHHHHh--cch-hhhhhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHhhccCcchHHHHHH
Q 003035 429 MFEREEYKDACYYFEAAADA--GHI-YSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLN 505 (855)
Q Consensus 429 ~l~~g~~~eA~~~~~~Al~~--~~~-~a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~~~~~~~A~~~l~ 505 (855)
.-.+|+++.|=.+..+|-+. ++. ......+++...+|++..|...+.++.+..|.+
T Consensus 128 A~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~--------------------- 186 (400)
T COG3071 128 AQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRH--------------------- 186 (400)
T ss_pred HHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCC---------------------
Confidence 88899999999999999887 222 245666788888888888877766666555554
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCC--CHh--HHHHHHHH--HHHcCCHHHHHHHHHHHHhcCC
Q 003035 506 YASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL--SVD--CLELRAWL--FIAADDYESALRDTLALLALES 579 (855)
Q Consensus 506 ~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p--~~~--~l~lra~~--y~~~gd~~~A~~~~~~aL~~~P 579 (855)
+........+|...|++.+....+.++-+-.- +.+ -+...++. ..+.++-..+.. +..-.+.-|
T Consensus 187 ---------~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g-L~~~W~~~p 256 (400)
T COG3071 187 ---------PEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG-LKTWWKNQP 256 (400)
T ss_pred ---------hHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH-HHHHHHhcc
Confidence 44444456678888888888887777766332 222 22222221 112222222221 122222222
Q ss_pred chhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHH
Q 003035 580 NYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAA 659 (855)
Q Consensus 580 ~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A 659 (855)
........+.... ...+.+ ..++..+..++.+.++..-+.. +....+ ..+-+++..=
T Consensus 257 r~lr~~p~l~~~~------------------a~~li~--l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l 313 (400)
T COG3071 257 RKLRNDPELVVAY------------------AERLIR--LGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPL 313 (400)
T ss_pred HHhhcChhHHHHH------------------HHHHHH--cCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHH
Confidence 2111111111111 111111 1112224455556665543332 222112 3466777888
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCchhHHHHHHHHHHHh
Q 003035 660 MRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEAL 738 (855)
Q Consensus 660 ~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~~a~~~lg~~~~~~g~~~~A~~~~~~lle~al 738 (855)
++..++.++..|+++..+..+|..++..+.|.+|..+|+.+++..|+...+..+|.++.++|+..+|.+. .++++
T Consensus 314 ~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~----r~e~L 388 (400)
T COG3071 314 IKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQV----RREAL 388 (400)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHH----HHHHH
Confidence 8888888999999999999999999999999999999999999988888888899999999999998888 88877
No 122
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.04 E-value=8.7e-09 Score=111.10 Aligned_cols=166 Identities=15% Similarity=0.116 Sum_probs=134.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHH
Q 003035 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYIL 717 (855)
Q Consensus 639 ~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~ 717 (855)
++......|.++...|++++|++.+.+. ++.+.......++..++++|.|.+.+++.-+.+.+. -.....|++.
T Consensus 101 ~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~ 175 (290)
T PF04733_consen 101 NEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVN 175 (290)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 4456667788888999999999888764 567888889999999999999999999999988777 5555556666
Q ss_pred HHCC--CCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHH
Q 003035 718 ADTN--LDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYY 791 (855)
Q Consensus 718 ~~~g--~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~ 791 (855)
...| ++.+|.-. |++.. ...+. ..++.++.++..+|++++|.+.+++|++.+ ++.++.|++.+..
T Consensus 176 l~~g~e~~~~A~y~----f~El~-----~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~ 246 (290)
T PF04733_consen 176 LATGGEKYQDAFYI----FEELS-----DKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSL 246 (290)
T ss_dssp HHHTTTCCCHHHHH----HHHHH-----CCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHH
T ss_pred HHhCchhHHHHHHH----HHHHH-----hccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 6655 58999999 99987 44433 788899999999999999999999999988 8999999999999
Q ss_pred HcCCH-HHHHHHHHHHHHHccCCHHHHH
Q 003035 792 LKNEL-KAAYDEMTKLLEKAQYSASAFE 818 (855)
Q Consensus 792 ~~g~~-~~A~~~~~kal~~~p~~~~a~~ 818 (855)
.+|+. +.+.+++.+....+|+++..-.
T Consensus 247 ~~gk~~~~~~~~l~qL~~~~p~h~~~~~ 274 (290)
T PF04733_consen 247 HLGKPTEAAERYLSQLKQSNPNHPLVKD 274 (290)
T ss_dssp HTT-TCHHHHHHHHHCHHHTTTSHHHHH
T ss_pred HhCCChhHHHHHHHHHHHhCCCChHHHH
Confidence 99987 6677888888889999887643
No 123
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.01 E-value=8.6e-09 Score=109.68 Aligned_cols=149 Identities=16% Similarity=0.047 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-------HHHHHHHHHHHHCCC
Q 003035 656 QKAAMRCLRLARNHSSSE------HERLVYEGWILYDTGHREEALSRAEKSISIERTF-------EAFFLKAYILADTNL 722 (855)
Q Consensus 656 ~~~A~~~l~~al~~~p~~------~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-------~a~~~lg~~~~~~g~ 722 (855)
++.|.++|..-+++..+. ..++-++|..|+-+|+|+.|+..-+.-+.+...+ .++.++|.++.-.|+
T Consensus 171 l~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~ 250 (639)
T KOG1130|consen 171 LENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN 250 (639)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc
Confidence 344555555555443322 3456789999999999999999999988886654 678899999999999
Q ss_pred CchhHHHHHHHHHHHhcCCCCCCCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--------cHHHHHHHHHHH
Q 003035 723 DPESSTYVIQLLEEALRCPSDGLRKG----QALNNLGSIYVECGKLDQAENCYINALDIK--------HTRAHQGLARVY 790 (855)
Q Consensus 723 ~~~A~~~~~~lle~al~~~~~~~~p~----~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--------~~~a~~~lg~~~ 790 (855)
++.|+++ |+..+...- ++... +..+.||.+|.-..++++|+.++++-|.|. ..++++.||..+
T Consensus 251 fe~A~eh----YK~tl~LAi-elg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~ 325 (639)
T KOG1130|consen 251 FELAIEH----YKLTLNLAI-ELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAF 325 (639)
T ss_pred cHhHHHH----HHHHHHHHH-HhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 9999999 777662111 12111 788899999999999999999999988775 568999999999
Q ss_pred HHcCCHHHHHHHHHHHHHH
Q 003035 791 YLKNELKAAYDEMTKLLEK 809 (855)
Q Consensus 791 ~~~g~~~~A~~~~~kal~~ 809 (855)
-..|..++|+...++.+++
T Consensus 326 ~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 326 NALGEHRKALYFAELHLRS 344 (639)
T ss_pred HhhhhHHHHHHHHHHHHHH
Confidence 9999999999988888765
No 124
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=2.7e-09 Score=110.64 Aligned_cols=125 Identities=16% Similarity=0.073 Sum_probs=112.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCC
Q 003035 645 RQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLD 723 (855)
Q Consensus 645 ~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~ 723 (855)
..|.-+++.++|.+|+..|.+||+++|+++..|.+++.+|.++|+++.|++..+.+|.++|.+ .+|-.+|.+|..+|++
T Consensus 86 ~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 86 NEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 467888999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred chhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHH---HHHHHHHHHHhcc
Q 003035 724 PESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLD---QAENCYINALDIK 778 (855)
Q Consensus 724 ~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~---~A~~~~~kAL~~~ 778 (855)
.+|+.. |++++ +++|+ ..+.+|..+-...++.. .+...++-+..+.
T Consensus 166 ~~A~~a----ykKaL-----eldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig 216 (304)
T KOG0553|consen 166 EEAIEA----YKKAL-----ELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIG 216 (304)
T ss_pred HHHHHH----HHhhh-----ccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhcc
Confidence 999999 99999 99998 77888888887777655 4555555554444
No 125
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.97 E-value=5.7e-09 Score=99.86 Aligned_cols=103 Identities=16% Similarity=0.058 Sum_probs=97.3
Q ss_pred HHcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHH
Q 003035 633 LIND-PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAF 710 (855)
Q Consensus 633 l~~~-p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~ 710 (855)
.... ++.-...+..|..++..|++++|.+.|+-+..++|.+++.|++||.++..+|++++|+..|.+++.++|++ .++
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 3445 66677889999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHCCCCchhHHHHHHHHHHHhc
Q 003035 711 FLKAYILADTNLDPESSTYVIQLLEEALR 739 (855)
Q Consensus 711 ~~lg~~~~~~g~~~~A~~~~~~lle~al~ 739 (855)
++.|.++...|+.+.|.+. |+.++.
T Consensus 107 ~~ag~c~L~lG~~~~A~~a----F~~Ai~ 131 (157)
T PRK15363 107 WAAAECYLACDNVCYAIKA----LKAVVR 131 (157)
T ss_pred HHHHHHHHHcCCHHHHHHH----HHHHHH
Confidence 9999999999999999999 999993
No 126
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.96 E-value=7.2e-09 Score=107.52 Aligned_cols=115 Identities=23% Similarity=0.263 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HH
Q 003035 674 HERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QA 750 (855)
Q Consensus 674 ~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a 750 (855)
++-+...|.-++..++|++|+..|.+||+++|.+ ..|-++|.+|.++|.++.|++. .+.+| .++|. .+
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkD----ce~Al-----~iDp~yska 151 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKD----CESAL-----SIDPHYSKA 151 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHH----HHHHH-----hcChHHHHH
Confidence 4556778999999999999999999999999999 8888999999999999999999 99999 99998 99
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHH
Q 003035 751 LNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELK 797 (855)
Q Consensus 751 ~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~ 797 (855)
|..||.+|..+|++.+|++.|+|||+++ +.....+|.++-.+++...
T Consensus 152 y~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 152 YGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999 7777778887777766544
No 127
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.94 E-value=9.4e-08 Score=108.99 Aligned_cols=192 Identities=11% Similarity=-0.012 Sum_probs=139.9
Q ss_pred HHHHHHhCCHHHHHHHHHHHHccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHh
Q 003035 522 AVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHV 601 (855)
Q Consensus 522 a~~~~~~~~~~~A~~~~~k~l~~~p~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~ 601 (855)
..+|...|+..+|.....+-++.+|++..+-.+|.+....-=|++|.+..+..-.... ..... ..
T Consensus 431 i~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~------------r~~~~--~~- 495 (777)
T KOG1128|consen 431 ILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQ------------RSLAL--LI- 495 (777)
T ss_pred HHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHH------------Hhhcc--cc-
Confidence 4466777777777777777777555665555555554444444444444333221100 00000 00
Q ss_pred hccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 003035 602 RSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEG 681 (855)
Q Consensus 602 ~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg 681 (855)
+ +..+-..+...++..++.+|-....||..|.+.++.++++.|...|.....++|++.++|.+++
T Consensus 496 ------------~---~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls 560 (777)
T KOG1128|consen 496 ------------L---SNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLS 560 (777)
T ss_pred ------------c---cchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhh
Confidence 0 0111112344566777888888899999999999999999999999999999999999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCH
Q 003035 682 WILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK 747 (855)
Q Consensus 682 ~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p 747 (855)
..|...|+-.+|-..+++|++.+.++ ..|-|.-.+..+.|.+++|++. +.+.+..+....++
T Consensus 561 ~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A----~~rll~~~~~~~d~ 623 (777)
T KOG1128|consen 561 TAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKA----YHRLLDLRKKYKDD 623 (777)
T ss_pred HHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHH----HHHHHHhhhhcccc
Confidence 99999999999999999999999877 9999999999999999999999 88888555444433
No 128
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=3.6e-07 Score=94.01 Aligned_cols=391 Identities=13% Similarity=0.033 Sum_probs=218.8
Q ss_pred chhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhcchhhhh--hHHHHHHHhCChHHHHHHH
Q 003035 397 VSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLA--GLARAKYKVGQQYSAYKLI 474 (855)
Q Consensus 397 ~~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~~~a~~--~la~~~~~~g~~~~A~~~l 474 (855)
+++.+++++..-.+.+|.+ ..++..||..|....+|..|..||++.-...|.++.+ .-|...++.+.+..|+...
T Consensus 25 ry~DaI~~l~s~~Er~p~~---rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~ 101 (459)
T KOG4340|consen 25 RYADAIQLLGSELERSPRS---RAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVA 101 (459)
T ss_pred hHHHHHHHHHHHHhcCccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 4899999999888887754 3467899999999999999999999986666655543 3466777788888887665
Q ss_pred HhHHHcCCCchH-H--HHHHhhccCcchHHHHHHHHHHhCC--CCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCC-CH
Q 003035 475 NSIISEHKPTGW-M--YQERSLYNLGREKIVDLNYASELDP--TLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SV 548 (855)
Q Consensus 475 ~~~i~~~p~~~~-~--y~~~~~~~~~~~A~~~l~~a~~ldP--~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p-~~ 548 (855)
..+.. .|+... . .+....|...+. .--...++.-| +......+.|-++.+.|++++|..-|+.++.+.- .+
T Consensus 102 ~~~~D-~~~L~~~~lqLqaAIkYse~Dl--~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp 178 (459)
T KOG4340|consen 102 FLLLD-NPALHSRVLQLQAAIKYSEGDL--PGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP 178 (459)
T ss_pred HHhcC-CHHHHHHHHHHHHHHhcccccC--cchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc
Confidence 44322 121110 0 111122322211 11233445556 3445566778899999999999999999998654 45
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCchhhhh--cccch----hHHHHHHHHHhhccChhhhHHHHhhhcc
Q 003035 549 DCLELRAWLFIAADDYESALRDTLALLAL----ESNYMMFH--GRVSG----DHLVKLLNHHVRSWSPADCWIKLYDRWS 618 (855)
Q Consensus 549 ~~l~lra~~y~~~gd~~~A~~~~~~aL~~----~P~~~~~~--~~~~~----~~l~~ll~~~~~~~~~a~~~~~~~~~~~ 618 (855)
-..+..|.++...|+++.|+..+.+++.. .|+...-. ..... .....-....++.++... .++-+.+
T Consensus 179 llAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa---AIeyq~~ 255 (459)
T KOG4340|consen 179 LLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA---AIEYQLR 255 (459)
T ss_pred hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh---hhhhhcc
Confidence 55667799999999999999998888754 34321000 00000 000000000001110000 0000000
Q ss_pred cccccchHHHHHHH-HHcCC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHH
Q 003035 619 SVDDIGSLAVINQM-LINDP-----GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREE 692 (855)
Q Consensus 619 ~~~d~~al~~~~~~-l~~~p-----~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~e 692 (855)
..+..+.. ...-| -++.....+++. --.+++-+..+-+.=.++++|-.++.+-++-.+|.+..-|+-
T Consensus 256 ------n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~l 328 (459)
T KOG4340|consen 256 ------NYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDL 328 (459)
T ss_pred ------cHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhH
Confidence 01111122 22222 234444444432 223456666666777777888777888888888888777777
Q ss_pred HHHHHHHHHhccCCh------HHHHHHHHH-HHHCCCCchhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCHH
Q 003035 693 ALSRAEKSISIERTF------EAFFLKAYI-LADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLD 765 (855)
Q Consensus 693 Al~~~~kal~~~p~~------~a~~~lg~~-~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~~a~~~LG~~y~~~g~~~ 765 (855)
|...+- -+|+. .-.+.+-.+ ...+...++|.+. ++..-+.-.++++...+-.....--.+.....
T Consensus 329 AADvLA----En~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KK----L~~La~~l~~kLRklAi~vQe~r~~~dd~a~R 400 (459)
T KOG4340|consen 329 AADVLA----ENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKK----LDGLAGMLTEKLRKLAIQVQEARHNRDDEAIR 400 (459)
T ss_pred HHHHHh----hCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 765543 34443 222333222 2334455555555 33332000001111011111111001111234
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccC
Q 003035 766 QAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQY 812 (855)
Q Consensus 766 ~A~~~~~kAL~~~~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~ 812 (855)
.|++.|+.++++. ..+.+..+++++...|+..+.+.|.+.++.-.+
T Consensus 401 ~ai~~Yd~~LE~Y-LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~e 446 (459)
T KOG4340|consen 401 KAVNEYDETLEKY-LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCND 446 (459)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHhhccccccHHHHHHHHHHHhhhcc
Confidence 5566666666554 557788899999999999999999998876543
No 129
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=7.6e-07 Score=90.21 Aligned_cols=161 Identities=20% Similarity=0.107 Sum_probs=122.0
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHccCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHH
Q 003035 521 RAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNH 599 (855)
Q Consensus 521 ~a~~~~~~~~~~~A~~~~~k~l~~~p-~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~ 599 (855)
...+.+..|+.+-|..++++.-..-| +.....+.|..+...|.+++|++.|+.+|..||.+...+
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~-------------- 123 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIR-------------- 123 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHH--------------
Confidence 44567788999999999999876557 567778889999999999999999999998888764222
Q ss_pred HhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 003035 600 HVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVY 679 (855)
Q Consensus 600 ~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~ 679 (855)
-+.--++..+|+.-+|++.+..-++..+.++++|..
T Consensus 124 --------------------------------------------KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~e 159 (289)
T KOG3060|consen 124 --------------------------------------------KRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHE 159 (289)
T ss_pred --------------------------------------------HHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHH
Confidence 122233455677778888888888888888888888
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCC---chhHHHHHHHHHHHhcCCCCCCCHH
Q 003035 680 EGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLD---PESSTYVIQLLEEALRCPSDGLRKG 748 (855)
Q Consensus 680 lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~---~~A~~~~~~lle~al~~~~~~~~p~ 748 (855)
++.+|...|+|++|.-++++.+-++|.+ -.+..+|.+++.+|.- ..|.++ |++++ ++.|.
T Consensus 160 LaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arky----y~~al-----kl~~~ 223 (289)
T KOG3060|consen 160 LAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKY----YERAL-----KLNPK 223 (289)
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH----HHHHH-----HhChH
Confidence 8888888888888888888888888877 5555677777776652 334444 77777 66664
No 130
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.90 E-value=1e-08 Score=98.19 Aligned_cols=107 Identities=13% Similarity=0.031 Sum_probs=91.5
Q ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcC
Q 003035 663 LRLARNHS-SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRC 740 (855)
Q Consensus 663 l~~al~~~-p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~ 740 (855)
+.-+..+. ++.-+..+.+|..++..|++++|.+.|+-...++|.+ ..|+++|.++..+|++.+|+.. |.+++
T Consensus 23 l~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~a----Y~~A~-- 96 (157)
T PRK15363 23 LRMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYA----YGRAA-- 96 (157)
T ss_pred HHHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHH----HHHHH--
Confidence 34445677 7788888999999999999999999999999999988 8888999999999999988888 88888
Q ss_pred CCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 003035 741 PSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK 778 (855)
Q Consensus 741 ~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~ 778 (855)
.++|+ .++.++|.+++..|+.+.|.++|+.|+..-
T Consensus 97 ---~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 97 ---QIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred ---hcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 77777 888888888888888888888888888765
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.89 E-value=1e-07 Score=104.74 Aligned_cols=151 Identities=18% Similarity=0.139 Sum_probs=137.5
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHH
Q 003035 636 DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKA 714 (855)
Q Consensus 636 ~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg 714 (855)
+|....++|-.+..++..|++++|+..++..+...|+|+..+...|.++...|+.++|++.+++++.++|+. ....++|
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 377788899999999999999999999999999999999999999999999999999999999999999998 9999999
Q ss_pred HHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 003035 715 YILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYL 792 (855)
Q Consensus 715 ~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~~~~a~~~lg~~~~~ 792 (855)
.+|.+.|++.+|+.. +++.+ ..+|+ ..|..|+..|..+|+-.+|...+ +..|..
T Consensus 382 ~all~~g~~~eai~~----L~~~~-----~~~p~dp~~w~~LAqay~~~g~~~~a~~A~---------------AE~~~~ 437 (484)
T COG4783 382 QALLKGGKPQEAIRI----LNRYL-----FNDPEDPNGWDLLAQAYAELGNRAEALLAR---------------AEGYAL 437 (484)
T ss_pred HHHHhcCChHHHHHH----HHHHh-----hcCCCCchHHHHHHHHHHHhCchHHHHHHH---------------HHHHHh
Confidence 999999999999999 99999 77777 89999999999999988876654 666778
Q ss_pred cCCHHHHHHHHHHHHHHc
Q 003035 793 KNELKAAYDEMTKLLEKA 810 (855)
Q Consensus 793 ~g~~~~A~~~~~kal~~~ 810 (855)
.|++++|+..+..+-+..
T Consensus 438 ~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 438 AGRLEQAIIFLMRASQQV 455 (484)
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 899999999998888775
No 132
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.88 E-value=5.9e-08 Score=104.67 Aligned_cols=248 Identities=13% Similarity=0.064 Sum_probs=140.7
Q ss_pred hhhhcHHHHHHHHHHHHHhc---chhhhhhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHhhcc----CcchHHH
Q 003035 430 FEREEYKDACYYFEAAADAG---HIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYN----LGREKIV 502 (855)
Q Consensus 430 l~~g~~~eA~~~~~~Al~~~---~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~~~----~~~~A~~ 502 (855)
+-.|+|..++..++. .... .......++|+|+.+|++...+..+..- ..|..... .....|. ..+.++.
T Consensus 12 fy~G~Y~~~i~e~~~-~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~--~~~~l~av-~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 12 FYLGNYQQCINEASL-KSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS--SSPELQAV-RLLAEYLSSPSDKESALE 87 (290)
T ss_dssp HCTT-HHHHCHHHHC-HTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT--SSCCCHHH-HHHHHHHCTSTTHHCHHH
T ss_pred HHhhhHHHHHHHhhc-cCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC--CChhHHHH-HHHHHHHhCccchHHHHH
Confidence 445778777766551 1111 1234567788888888877665554331 13333222 1122221 1234444
Q ss_pred HHHHHHHhCC--CCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Q 003035 503 DLNYASELDP--TLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESN 580 (855)
Q Consensus 503 ~l~~a~~ldP--~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~ 580 (855)
.++..+.... .+......-|.++...|++++|+..+.+. .+.++..+.-.+|..+++++.|.+.++.+-..+.|
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD 163 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDED 163 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 4444332221 23334455567888999999999877654 46788888889999999999999999988877766
Q ss_pred hhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHH
Q 003035 581 YMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAM 660 (855)
Q Consensus 581 ~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~ 660 (855)
.... ..+..|..++.-.....+ +..+++.+.+..+..+.+...++.+.+.+|++++|.
T Consensus 164 ~~l~--------------------qLa~awv~l~~g~e~~~~--A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe 221 (290)
T PF04733_consen 164 SILT--------------------QLAEAWVNLATGGEKYQD--AFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAE 221 (290)
T ss_dssp HHHH--------------------HHHHHHHHHHHTTTCCCH--HHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHH
T ss_pred HHHH--------------------HHHHHHHHHHhCchhHHH--HHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4311 112334444432222222 344555555555566666666667777777777777
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhccCCh
Q 003035 661 RCLRLARNHSSSEHERLVYEGWILYDTGHR-EEALSRAEKSISIERTF 707 (855)
Q Consensus 661 ~~l~~al~~~p~~~~~~~~lg~~~~~~g~~-~eAl~~~~kal~~~p~~ 707 (855)
..++++++.+|++++++.+++.+...+|+. +.+-++..+....+|+.
T Consensus 222 ~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 222 ELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 777777777777777777776666666666 44555555555566654
No 133
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.87 E-value=1.8e-07 Score=98.56 Aligned_cols=170 Identities=10% Similarity=0.023 Sum_probs=121.4
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH---HHHHHHHHHCCCHHHHHHHHHHHHhccCCh----HHH
Q 003035 638 GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERL---VYEGWILYDTGHREEALSRAEKSISIERTF----EAF 710 (855)
Q Consensus 638 ~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~---~~lg~~~~~~g~~~eAl~~~~kal~~~p~~----~a~ 710 (855)
..+...+..|...+..|++++|++.|++++...|..+.+. +.+|.+++.++++++|+..+++.++.+|++ .++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 3566788899999999999999999999999999887665 899999999999999999999999999987 889
Q ss_pred HHHHHHHHHCCC------------------CchhHHHHHHHHHHHhcCCCCCCCHH-----HHHHHHHHHHHHcCCHHHH
Q 003035 711 FLKAYILADTNL------------------DPESSTYVIQLLEEALRCPSDGLRKG-----QALNNLGSIYVECGKLDQA 767 (855)
Q Consensus 711 ~~lg~~~~~~g~------------------~~~A~~~~~~lle~al~~~~~~~~p~-----~a~~~LG~~y~~~g~~~~A 767 (855)
+.+|.++...+. ..+|+.. |++.+ +..|+ ++...+..+...+
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~----~~~li-----~~yP~S~ya~~A~~rl~~l~~~l------ 174 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRD----FSKLV-----RGYPNSQYTTDATKRLVFLKDRL------ 174 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHH----HHHHH-----HHCcCChhHHHHHHHHHHHHHHH------
Confidence 999988655431 1245556 88888 66565 2222222111111
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCH---HHHHHHhh----cCCHHHHHHHHH
Q 003035 768 ENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSA---SAFEKRSE----YSDREMAKNDLN 834 (855)
Q Consensus 768 ~~~~~kAL~~~~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~---~a~~~lg~----~g~~eeA~~~~~ 834 (855)
..--+..|..|.+.|++..|+.-++.+++..|+.+ +++..++. +|..++|.....
T Consensus 175 ------------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 175 ------------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred ------------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 11122456677777777777777777777766653 34444444 677777766543
No 134
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.84 E-value=9.8e-08 Score=92.40 Aligned_cols=123 Identities=23% Similarity=0.184 Sum_probs=99.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh----HHHHHHHHH
Q 003035 644 FRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFFLKAYI 716 (855)
Q Consensus 644 ~~~a~~l~~~g~~~~A~~~l~~al~~~p~~---~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~----~a~~~lg~~ 716 (855)
|......+..++...+...++...+.+|+. ..+.+.+|.+++..|++++|+..|++++...|+. .+.+.+|.+
T Consensus 15 y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~ 94 (145)
T PF09976_consen 15 YEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARI 94 (145)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 344444557888999988999999999988 4566889999999999999999999999987665 678889999
Q ss_pred HHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003035 717 LADTNLDPESSTYVIQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINAL 775 (855)
Q Consensus 717 ~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~-~a~~~LG~~y~~~g~~~~A~~~~~kAL 775 (855)
+...|++++|+.. ++... ..... .++..+|.+|...|++++|+..|++||
T Consensus 95 ~~~~~~~d~Al~~----L~~~~-----~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 95 LLQQGQYDEALAT----LQQIP-----DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHcCCHHHHHHH----HHhcc-----CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9999999999999 76533 21112 677789999999999999999998875
No 135
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.83 E-value=2.8e-08 Score=110.77 Aligned_cols=110 Identities=14% Similarity=0.060 Sum_probs=100.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCC
Q 003035 643 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTN 721 (855)
Q Consensus 643 ~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g 721 (855)
+...|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..+++++.++|++ .+|+.+|.++...|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 45568888999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHc
Q 003035 722 LDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVEC 761 (855)
Q Consensus 722 ~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~ 761 (855)
++++|+.. |++++ .++|+ .+...++.+...+
T Consensus 85 ~~~eA~~~----~~~al-----~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAA----LEKGA-----SLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHH----HHHHH-----HhCCCCHHHHHHHHHHHHHH
Confidence 99999999 99999 88877 6666666665444
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.82 E-value=2.8e-07 Score=101.40 Aligned_cols=148 Identities=20% Similarity=0.056 Sum_probs=135.8
Q ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH-
Q 003035 671 SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG- 748 (855)
Q Consensus 671 p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~- 748 (855)
|....++|..+..++..|++++|...++..+...|++ ..+-..+.++...++.++|.+. +++++ .++|+
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~----~~kal-----~l~P~~ 373 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIER----LKKAL-----ALDPNS 373 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH----HHHHH-----hcCCCc
Confidence 7888999999999999999999999999999999999 8888899999999999999999 99999 99998
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhhcCC
Q 003035 749 -QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSD 825 (855)
Q Consensus 749 -~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~~g~ 825 (855)
-.+.++|.+|.+.|++++|+..++..+..+ ++..|..||..|..+|+..+|...+.+.... .|+
T Consensus 374 ~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~-------------~G~ 440 (484)
T COG4783 374 PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYAL-------------AGR 440 (484)
T ss_pred cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh-------------CCC
Confidence 788999999999999999999999999888 9999999999999999999998877655443 677
Q ss_pred HHHHHHHHHHHHhcC
Q 003035 826 REMAKNDLNMATQLD 840 (855)
Q Consensus 826 ~eeA~~~~~kAl~l~ 840 (855)
+++|+..+.+|.+..
T Consensus 441 ~~~A~~~l~~A~~~~ 455 (484)
T COG4783 441 LEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHHHHhc
Confidence 888888888887765
No 137
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.82 E-value=1.7e-07 Score=108.94 Aligned_cols=152 Identities=17% Similarity=0.134 Sum_probs=116.5
Q ss_pred HHHhcCCCcHHHH--HHHHHHHHHCCC---HHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCc----hhHHHHHHHH
Q 003035 665 LARNHSSSEHERL--VYEGWILYDTGH---REEALSRAEKSISIERTF-EAFFLKAYILADTNLDP----ESSTYVIQLL 734 (855)
Q Consensus 665 ~al~~~p~~~~~~--~~lg~~~~~~g~---~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~----~A~~~~~~ll 734 (855)
.+....|.+.++| +..|.-+...++ .++|+..|+++++++|++ .++-.++.++.....+. ..+..+.+..
T Consensus 328 ~~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 328 RLQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred HHhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 3345566776665 667777776655 778999999999999999 88888777775543333 2233333336
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCC
Q 003035 735 EEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK-HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS 813 (855)
Q Consensus 735 e~al~~~~~~~~p~~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~-~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~ 813 (855)
++++..+.+...| .++..+|..+...|++++|...+++|++++ +..+|..+|.++...|+.++|++.|++|+.++|.+
T Consensus 408 ~~a~al~~~~~~~-~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 408 DNIVALPELNVLP-RIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred HHhhhcccCcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 6666333333333 678888999889999999999999999999 88999999999999999999999999999999998
Q ss_pred HHHH
Q 003035 814 ASAF 817 (855)
Q Consensus 814 ~~a~ 817 (855)
+..|
T Consensus 487 pt~~ 490 (517)
T PRK10153 487 NTLY 490 (517)
T ss_pred chHH
Confidence 8743
No 138
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.82 E-value=2.2e-08 Score=105.22 Aligned_cols=148 Identities=17% Similarity=0.145 Sum_probs=119.9
Q ss_pred EEEEEcCeEEEeeehhhhcCCHHHHHhhcCCCccCCCC--eeEecCCCCCHHHHHHHHHHhccCCCCCCCHHHHHHHHHH
Q 003035 220 VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRK--TIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLELLSF 297 (855)
Q Consensus 220 V~f~v~~~~~~aHr~vLaa~S~~F~~mf~~~~~E~~~~--~I~l~~~~is~~~~~~ll~y~YTg~l~~~~~~~~~~ll~~ 297 (855)
|.+-++ .+.|||++++ .|++||+.||.|+|.|++.+ ...++-+..+..+.+.+++|+|+++.+ +.++-+.+++.+
T Consensus 295 iql~~~-~RyP~hla~i-~R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~td-i~~~~A~dvll~ 371 (516)
T KOG0511|consen 295 IQLPEE-DRYPAHLARI-LRVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTD-IIFDVASDVLLF 371 (516)
T ss_pred cccccc-ccccHHHHHH-HHHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhccccc-chHHHHhhHHHH
Confidence 444433 4599999999 68899999999999996532 222222667789999999999999999 999999999999
Q ss_pred hchhChH--H-HHHHHHHHHHhhcCC--hhhHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhcCChhHHhhhcCchhH
Q 003035 298 ANRFCCE--E-MKSACDAHLASLVGD--IEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKIFCSSEAT 370 (855)
Q Consensus 298 A~~~~~~--~-Lk~~C~~~l~~~l~~--~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~v~~~~~f~~ll~~~~~~ 370 (855)
|+++-++ + ||.+....|.+..-. .=|+..|+.++....+..|...+..|+.+|+..++.+|++-+.+.....+
T Consensus 372 ad~lal~~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~~~~s~~r 449 (516)
T KOG0511|consen 372 ADKLALADDRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSSLRTSVPR 449 (516)
T ss_pred hhHhhhhhhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHHHHhccch
Confidence 9999776 2 677666666655432 34699999999999999999999999999999999999998887655443
No 139
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.79 E-value=2.3e-08 Score=83.43 Aligned_cols=67 Identities=15% Similarity=0.189 Sum_probs=63.9
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhccC
Q 003035 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTG-HREEALSRAEKSISIER 705 (855)
Q Consensus 639 ~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g-~~~eAl~~~~kal~~~p 705 (855)
++..++.+|..++..|++++|+..|+++++++|+++.+++++|.++..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 56788999999999999999999999999999999999999999999999 79999999999999988
No 140
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.76 E-value=1.2e-07 Score=94.64 Aligned_cols=115 Identities=17% Similarity=0.163 Sum_probs=90.4
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHH
Q 003035 637 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFL 712 (855)
Q Consensus 637 p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~---~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~ 712 (855)
+.....++.+|..+...|++++|+.+|+++++..|+. ..+++.+|.++...|++++|+..++++++..|++ .++..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 4566678888888889999999999999998877653 4678888999999999999999999999988888 88888
Q ss_pred HHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 003035 713 KAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK 778 (855)
Q Consensus 713 lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~ 778 (855)
+|.++...|+...+... ++.++ ..+++|++++++++..+
T Consensus 112 lg~~~~~~g~~~~a~~~----~~~A~-----------------------~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGD----QDEAE-----------------------ALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHHHHHHcCChHhHhhC----HHHHH-----------------------HHHHHHHHHHHHHHhhC
Confidence 88888888887776666 66665 12456666666666655
No 141
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.74 E-value=1.1e-06 Score=92.65 Aligned_cols=189 Identities=11% Similarity=0.034 Sum_probs=120.1
Q ss_pred hhHHHHHHHHHHhCCHHHHHHHHHHHHccCCCH----hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchh
Q 003035 516 FPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV----DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGD 591 (855)
Q Consensus 516 ~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~~----~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~ 591 (855)
..++..|..++..|++++|+..|++++...|.. .+....|.+|.+++++++|+..+++.+..+|++.... .+.
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~---~a~ 109 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID---YVL 109 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH---HHH
Confidence 345667888999999999999999999988853 3446789999999999999999999999999975211 001
Q ss_pred HHHHHHHHHhhccChhhhHHHHhhhcc--cccc---cchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003035 592 HLVKLLNHHVRSWSPADCWIKLYDRWS--SVDD---IGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLA 666 (855)
Q Consensus 592 ~l~~ll~~~~~~~~~a~~~~~~~~~~~--~~~d---~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~a 666 (855)
+..++.... ....++.-+.... ..|. ..++..+...++..|+..... +|...+..+
T Consensus 110 Y~~g~~~~~-----~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~--------------~A~~rl~~l 170 (243)
T PRK10866 110 YMRGLTNMA-----LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTT--------------DATKRLVFL 170 (243)
T ss_pred HHHHHhhhh-----cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHH--------------HHHHHHHHH
Confidence 111110000 0000000000000 0000 123455566666666553211 111111110
Q ss_pred HhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh----HHHHHHHHHHHHCCCCchhHHH
Q 003035 667 RNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFFLKAYILADTNLDPESSTY 729 (855)
Q Consensus 667 l~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~----~a~~~lg~~~~~~g~~~~A~~~ 729 (855)
.-.-.+--+..|..|++.|.+.-|+.-++.+++-.|+. ++++.++.+|...|..++|...
T Consensus 171 ---~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~ 234 (243)
T PRK10866 171 ---KDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKV 234 (243)
T ss_pred ---HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHH
Confidence 00112223567888899999999999999999988876 8889999999999999998887
No 142
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.74 E-value=6.7e-08 Score=104.48 Aligned_cols=197 Identities=14% Similarity=0.060 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC-----Ch--H
Q 003035 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHS-----SS-EHERLVYEGWILYDTGHREEALSRAEKSISIER-----TF--E 708 (855)
Q Consensus 642 ~~~~~a~~l~~~g~~~~A~~~l~~al~~~-----p~-~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p-----~~--~ 708 (855)
.+...|..+...|++++|...|.++.... +. ....+...|.++... ++++|+..|++++.+.- .. .
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~ 115 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAK 115 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 45566778888899999999999987643 11 223445555665555 99999999999999742 22 6
Q ss_pred HHHHHHHHHHHC-CCCchhHHHHHHHHHHHhcCCCCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc------
Q 003035 709 AFFLKAYILADT-NLDPESSTYVIQLLEEALRCPSDGLRKG---QALNNLGSIYVECGKLDQAENCYINALDIK------ 778 (855)
Q Consensus 709 a~~~lg~~~~~~-g~~~~A~~~~~~lle~al~~~~~~~~p~---~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~------ 778 (855)
.+..+|.+|... |++++|++. |++|++.....-.+. ..+..+|.++...|+|++|++.|+++....
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~----Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~ 191 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEY----YQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL 191 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHH----HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHH----HHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence 788999999999 999999999 999995543333333 888999999999999999999999998753
Q ss_pred --cH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHH-----HHHHHhh------cCCHHHHHHHHHHHHhcCCCC
Q 003035 779 --HT-RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSAS-----AFEKRSE------YSDREMAKNDLNMATQLDPLR 843 (855)
Q Consensus 779 --~~-~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~-----a~~~lg~------~g~~eeA~~~~~kAl~l~P~~ 843 (855)
.. ..++..+.++...||...|...+++....+|.... ....|-. ...+++|+..|++..++||.-
T Consensus 192 ~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~ 270 (282)
T PF14938_consen 192 KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWK 270 (282)
T ss_dssp GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHH
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHH
Confidence 12 24567788999999999999999999999886633 2333333 667889999998888887643
No 143
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.73 E-value=5.5e-07 Score=92.38 Aligned_cols=151 Identities=16% Similarity=0.181 Sum_probs=102.3
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh----HHHH
Q 003035 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFF 711 (855)
Q Consensus 639 ~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~---~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~----~a~~ 711 (855)
++...+..|...+..|++.+|+..|++++...|.. +++.+.+|.+++..|++++|+..+++.++.+|++ .+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 45678899999999999999999999999988764 6788999999999999999999999999999987 8899
Q ss_pred HHHHHHHHCCC-----------CchhHHHHHHHHHHHhcCCCCCCCHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003035 712 LKAYILADTNL-----------DPESSTYVIQLLEEALRCPSDGLRKG-----QALNNLGSIYVECGKLDQAENCYINAL 775 (855)
Q Consensus 712 ~lg~~~~~~g~-----------~~~A~~~~~~lle~al~~~~~~~~p~-----~a~~~LG~~y~~~g~~~~A~~~~~kAL 775 (855)
.+|.++..+.. ..+|+.. |++.+ ...|+ ++-..+..+...+
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~----~~~li-----~~yP~S~y~~~A~~~l~~l~~~l-------------- 140 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEE----FEELI-----KRYPNSEYAEEAKKRLAELRNRL-------------- 140 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHH----HHHHH-----HH-TTSTTHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHH----HHHHH-----HHCcCchHHHHHHHHHHHHHHHH--------------
Confidence 99998766531 1245555 88888 44443 2221111111110
Q ss_pred hcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHH
Q 003035 776 DIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASA 816 (855)
Q Consensus 776 ~~~~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a 816 (855)
..--+..|..|.+.|.+..|+..++.+++..|+.+.+
T Consensus 141 ----a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~ 177 (203)
T PF13525_consen 141 ----AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAA 177 (203)
T ss_dssp ----HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHH
T ss_pred ----HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchH
Confidence 1112345666666677777777777777766666443
No 144
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.72 E-value=1.1e-07 Score=106.14 Aligned_cols=108 Identities=11% Similarity=0.030 Sum_probs=85.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHH
Q 003035 677 LVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNN 753 (855)
Q Consensus 677 ~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~ 753 (855)
+...|..++..|++++|+..|+++++++|++ .+++++|.+|...|++++|+.. +++++ .++|+ .+|++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~----~~~Al-----~l~P~~~~a~~~ 75 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVAD----ANKAI-----ELDPSLAKAYLR 75 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHH-----HhCcCCHHHHHH
Confidence 4556788888888888888888888888888 8888888888888888888888 88888 77776 77888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHc
Q 003035 754 LGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLK 793 (855)
Q Consensus 754 LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~ 793 (855)
+|.++..+|++++|+..|+++++++ +..+...++.+..+.
T Consensus 76 lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 76 KGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 8888888888888888888888877 677766666665444
No 145
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.71 E-value=4.8e-07 Score=92.82 Aligned_cols=168 Identities=16% Similarity=0.152 Sum_probs=108.8
Q ss_pred hhHHHHHHHHHHhCCHHHHHHHHHHHHccCCC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchh
Q 003035 516 FPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS----VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGD 591 (855)
Q Consensus 516 ~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~----~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~ 591 (855)
..++..|..+++.|++.+|+..|++++...|. +++...+|..+...|+++.|+..++..+...|++.... .+.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~---~A~ 82 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD---YAL 82 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH---HHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh---hHH
Confidence 45677899999999999999999999987774 56778889999999999999999999999999975211 000
Q ss_pred HHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 003035 592 HLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS 671 (855)
Q Consensus 592 ~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p 671 (855)
...++ +. +..+ ...+ .....++...+|+..|+..++..|
T Consensus 83 Y~~g~------------~~---~~~~------------~~~~--------------~~~~D~~~~~~A~~~~~~li~~yP 121 (203)
T PF13525_consen 83 YMLGL------------SY---YKQI------------PGIL--------------RSDRDQTSTRKAIEEFEELIKRYP 121 (203)
T ss_dssp HHHHH------------HH---HHHH------------HHHH---------------TT---HHHHHHHHHHHHHHHH-T
T ss_pred HHHHH------------HH---HHhC------------ccch--------------hcccChHHHHHHHHHHHHHHHHCc
Confidence 00000 00 0000 0000 001112223445555555555555
Q ss_pred CcH-----------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh----HHHHHHHHHHHHCCCCchhH
Q 003035 672 SEH-----------------ERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFFLKAYILADTNLDPESS 727 (855)
Q Consensus 672 ~~~-----------------~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~----~a~~~lg~~~~~~g~~~~A~ 727 (855)
+.. +--+.+|..|++.|.+..|+..++.+++..|+. +++..++.+|...|..+.|.
T Consensus 122 ~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 122 NSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp TSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 432 223567888999999999999999999999886 78888999999999887443
No 146
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.68 E-value=2.6e-07 Score=92.15 Aligned_cols=116 Identities=21% Similarity=0.208 Sum_probs=94.5
Q ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh----HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCC
Q 003035 671 SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR 746 (855)
Q Consensus 671 p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~----~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~ 746 (855)
|..+..++.+|..+...|++++|+..|+++++..|+. .+++.+|.++...|++++|+.. +++++ ...
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~----~~~al-----~~~ 102 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEY----YHQAL-----ELN 102 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHH----HHHHH-----HhC
Confidence 3556677889999999999999999999999877653 6788888888888988888888 88888 777
Q ss_pred HH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCC
Q 003035 747 KG--QALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS 813 (855)
Q Consensus 747 p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~ 813 (855)
|. .++.++|.++...|+...|...+++|+. .+.+|++.++++++.+|++
T Consensus 103 p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 103 PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEA------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred cccHHHHHHHHHHHHHcCChHhHhhCHHHHHH------------------HHHHHHHHHHHHHhhCchh
Confidence 76 7788888888888888887777766643 2677888888888888876
No 147
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.68 E-value=4.9e-07 Score=89.29 Aligned_cols=198 Identities=15% Similarity=0.071 Sum_probs=138.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHH
Q 003035 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYIL 717 (855)
Q Consensus 639 ~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~ 717 (855)
.+.++|..|.+|-..|-..-|.-.|.+++.+.|+.+++++++|..+...|+++.|...|...++++|.+ .++.+.|.++
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 467889999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHCCCCchhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH-cCCHHHHHHHH-HHHHhcc-cHHHHHHHHHHHHHcC
Q 003035 718 ADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVE-CGKLDQAENCY-INALDIK-HTRAHQGLARVYYLKN 794 (855)
Q Consensus 718 ~~~g~~~~A~~~~~~lle~al~~~~~~~~p~~a~~~LG~~y~~-~g~~~~A~~~~-~kAL~~~-~~~a~~~lg~~~~~~g 794 (855)
+..|++.-|... +.+-- ..+|.+.+-.|=....+ .-+..+|...+ +++...+ ....++-.+. -.|
T Consensus 144 YY~gR~~LAq~d----~~~fY-----Q~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~---yLg 211 (297)
T COG4785 144 YYGGRYKLAQDD----LLAFY-----QDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEF---YLG 211 (297)
T ss_pred eecCchHhhHHH----HHHHH-----hcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHH---HHh
Confidence 999999999999 55555 33333222222111122 23666776554 3444444 2222222222 222
Q ss_pred CHHHHHHHHHHHHHHccCCH-------HHHHHHhh----cCCHHHHHHHHHHHHhcCCCCcccchh
Q 003035 795 ELKAAYDEMTKLLEKAQYSA-------SAFEKRSE----YSDREMAKNDLNMATQLDPLRTYPYRY 849 (855)
Q Consensus 795 ~~~~A~~~~~kal~~~p~~~-------~a~~~lg~----~g~~eeA~~~~~kAl~l~P~~~~~~~~ 849 (855)
+.. -...|+++.+-..++. +.|..||. .|+.++|...|+-|+..+-.+-.-|||
T Consensus 212 kiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVynfVE~Ry 276 (297)
T COG4785 212 KIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYNFVEHRY 276 (297)
T ss_pred hcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 221 1234455555444443 45666666 789999999988888765444444444
No 148
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.68 E-value=2.1e-07 Score=92.55 Aligned_cols=96 Identities=20% Similarity=0.120 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh----HHHHHHHHHHHHCCCCchhHH
Q 003035 655 CQKAAMRCLRLARNHSSSE--HERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFFLKAYILADTNLDPESST 728 (855)
Q Consensus 655 ~~~~A~~~l~~al~~~p~~--~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~----~a~~~lg~~~~~~g~~~~A~~ 728 (855)
.+..+...+...++.++.+ ...++.+|.++..+|++++|+..|++++.+.|+. .+++++|.++...|++++|+.
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~ 93 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE 93 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 3555555555554554444 4445666666666777777777777776665442 456666666666666666666
Q ss_pred HHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHH
Q 003035 729 YVIQLLEEALRCPSDGLRKG--QALNNLGSIYV 759 (855)
Q Consensus 729 ~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~ 759 (855)
. +++++ .+.|. ..+.++|.++.
T Consensus 94 ~----~~~Al-----~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 94 Y----YFQAL-----ERNPFLPQALNNMAVICH 117 (168)
T ss_pred H----HHHHH-----HhCcCcHHHHHHHHHHHH
Confidence 6 66666 44444 55555555555
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.67 E-value=2.1e-07 Score=86.04 Aligned_cols=99 Identities=12% Similarity=0.119 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh----HHHHHH
Q 003035 641 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFFLK 713 (855)
Q Consensus 641 ~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~---~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~----~a~~~l 713 (855)
..++..|..+.++|++++|+..|+++++.+|++ +.+++.+|.++...|++++|+..|++++..+|++ .+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 467889999999999999999999999999876 5789999999999999999999999999998874 789999
Q ss_pred HHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH
Q 003035 714 AYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG 748 (855)
Q Consensus 714 g~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~ 748 (855)
|.++...|++++|+.. +++++ ...|+
T Consensus 83 ~~~~~~~~~~~~A~~~----~~~~~-----~~~p~ 108 (119)
T TIGR02795 83 GMSLQELGDKEKAKAT----LQQVI-----KRYPG 108 (119)
T ss_pred HHHHHHhCChHHHHHH----HHHHH-----HHCcC
Confidence 9999999999999999 99999 55554
No 150
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.67 E-value=2e-07 Score=92.64 Aligned_cols=97 Identities=15% Similarity=0.094 Sum_probs=81.1
Q ss_pred HHHHHHHHHcCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 003035 626 LAVINQMLINDPGK--SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKS 700 (855)
Q Consensus 626 l~~~~~~l~~~p~~--~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~---~~~~~~lg~~~~~~g~~~eAl~~~~ka 700 (855)
...+...+...+.+ ...++..|.++...|++++|+..|++++.+.|+. +.++.++|.++...|++++|+..|+++
T Consensus 19 ~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~A 98 (168)
T CHL00033 19 ADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQA 98 (168)
T ss_pred hhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455555555555 5677899999999999999999999999987763 458999999999999999999999999
Q ss_pred HhccCCh-HHHHHHHHHHHHCCC
Q 003035 701 ISIERTF-EAFFLKAYILADTNL 722 (855)
Q Consensus 701 l~~~p~~-~a~~~lg~~~~~~g~ 722 (855)
++++|.. ..+.++|.++...|+
T Consensus 99 l~~~~~~~~~~~~la~i~~~~~~ 121 (168)
T CHL00033 99 LERNPFLPQALNNMAVICHYRGE 121 (168)
T ss_pred HHhCcCcHHHHHHHHHHHHHhhH
Confidence 9999988 888888887776664
No 151
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.66 E-value=9.9e-06 Score=81.54 Aligned_cols=204 Identities=26% Similarity=0.235 Sum_probs=172.1
Q ss_pred HHHHHcCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC
Q 003035 630 NQMLINDPG--KSFLRFRQSLLLLRLNCQKAAMRCLRLARN--HSSSEHERLVYEGWILYDTGHREEALSRAEKSISIER 705 (855)
Q Consensus 630 ~~~l~~~p~--~~~~~~~~a~~l~~~g~~~~A~~~l~~al~--~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p 705 (855)
...+...+. ........+..+...+++..+...+...+. ..+.....+...|..+...+++.+++..+.+++...+
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (291)
T COG0457 47 EEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDP 126 (291)
T ss_pred HHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCC
Confidence 344444444 356777788888999999999999999987 7888899999999999999999999999999999888
Q ss_pred Ch-HHHHHHHH-HHHHCCCCchhHHHHHHHHHHHhcCCCCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 003035 706 TF-EAFFLKAY-ILADTNLDPESSTYVIQLLEEALRCPSDGLRK-----GQALNNLGSIYVECGKLDQAENCYINALDIK 778 (855)
Q Consensus 706 ~~-~a~~~lg~-~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p-----~~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~ 778 (855)
.. ......+. ++...|+++.|... +++++ ...| ...+..++..+...+++++|+..+.+++...
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~a~~~----~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 197 (291)
T COG0457 127 DPDLAEALLALGALYELGDYEEALEL----YEKAL-----ELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN 197 (291)
T ss_pred CcchHHHHHHHHHHHHcCCHHHHHHH----HHHHH-----hcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC
Confidence 87 66666666 89999999999999 99998 4333 2666777777888999999999999999988
Q ss_pred -c--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh----cCCHHHHHHHHHHHHhcCCC
Q 003035 779 -H--TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLDPL 842 (855)
Q Consensus 779 -~--~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~----~g~~eeA~~~~~kAl~l~P~ 842 (855)
. ...+..++..+...+++.+|+..+.+++...|+....+..++. .++.+++...+.++++.+|.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 198 PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 4 6889999999999999999999999999999986666666666 67899999999999999886
No 152
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.66 E-value=4.6e-07 Score=87.69 Aligned_cols=118 Identities=20% Similarity=0.116 Sum_probs=99.6
Q ss_pred HHHHCCCHHHHHHHHHHHHhccCCh----HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH---HHHHHHH
Q 003035 683 ILYDTGHREEALSRAEKSISIERTF----EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG---QALNNLG 755 (855)
Q Consensus 683 ~~~~~g~~~eAl~~~~kal~~~p~~----~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~---~a~~~LG 755 (855)
.....++...+...+++.++-+|+. .+.+.+|.++...|++++|... |++++... .++. .+...||
T Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~----l~~~~~~~---~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 20 QALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAA----LEKALANA---PDPELKPLARLRLA 92 (145)
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHH----HHHHHhhC---CCHHHHHHHHHHHH
Confidence 3346888999999999999999887 7788899999999999999999 99999322 1222 6888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003035 756 SIYVECGKLDQAENCYINALDIK-HTRAHQGLARVYYLKNELKAAYDEMTKLL 807 (855)
Q Consensus 756 ~~y~~~g~~~~A~~~~~kAL~~~-~~~a~~~lg~~~~~~g~~~~A~~~~~kal 807 (855)
.++...|++++|+..++....-. .+.++..+|.++..+|++++|+..|+++|
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999999999999997743333 77888999999999999999999999875
No 153
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.64 E-value=1.8e-07 Score=80.92 Aligned_cols=93 Identities=18% Similarity=0.168 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHC
Q 003035 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADT 720 (855)
Q Consensus 642 ~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~ 720 (855)
.++.+|..+...|++++|+..++++++..|++..+++.+|.++...|++++|+..+++++...|.. .+++.+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 467788999999999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred CCCchhHHHHHHHHHHHh
Q 003035 721 NLDPESSTYVIQLLEEAL 738 (855)
Q Consensus 721 g~~~~A~~~~~~lle~al 738 (855)
|++++|... +++++
T Consensus 82 ~~~~~a~~~----~~~~~ 95 (100)
T cd00189 82 GKYEEALEA----YEKAL 95 (100)
T ss_pred HhHHHHHHH----HHHHH
Confidence 999999999 99988
No 154
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.64 E-value=2.6e-07 Score=79.85 Aligned_cols=93 Identities=31% Similarity=0.408 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh----c
Q 003035 750 ALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----Y 823 (855)
Q Consensus 750 a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~----~ 823 (855)
++.++|.++...|++++|+..++++++.. +..++..+|.++...|++++|++.+++++...|.+..++..+|. .
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999988 67899999999999999999999999999999999999999988 8
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q 003035 824 SDREMAKNDLNMATQLDPL 842 (855)
Q Consensus 824 g~~eeA~~~~~kAl~l~P~ 842 (855)
|++++|...++++++.+|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999998874
No 155
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.63 E-value=8.5e-08 Score=79.95 Aligned_cols=63 Identities=24% Similarity=0.415 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHcc
Q 003035 749 QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKN-ELKAAYDEMTKLLEKAQ 811 (855)
Q Consensus 749 ~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g-~~~~A~~~~~kal~~~p 811 (855)
.+|..+|.++...|++++|+.+|+++++++ ++.+++++|.++..+| ++++|++.++++++++|
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 345555555555555555555555555555 5555555555555555 45555555555555554
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.63 E-value=3.6e-07 Score=84.40 Aligned_cols=105 Identities=14% Similarity=0.133 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----cHHHH
Q 003035 709 AFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK-----HTRAH 783 (855)
Q Consensus 709 a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~-----~~~a~ 783 (855)
.++.+|..+...|++++|+.. |+++++...+......+++.+|.++...|++++|++.|++++... .+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQA----FQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHH----HHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence 456666666666666666666 666662111111111456666666666666666666666666654 24566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHH
Q 003035 784 QGLARVYYLKNELKAAYDEMTKLLEKAQYSASAF 817 (855)
Q Consensus 784 ~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~ 817 (855)
+.+|.++...|++++|+..++++++..|++..+.
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 6666666666666666666666666666665543
No 157
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.62 E-value=1.3e-07 Score=77.90 Aligned_cols=64 Identities=20% Similarity=0.297 Sum_probs=59.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh
Q 003035 644 FRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (855)
Q Consensus 644 ~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~ 707 (855)
+.+|..+++.|++++|++.|+++++.+|+++++++.+|.++..+|++++|+..|+++++.+|++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 3578899999999999999999999999999999999999999999999999999999999975
No 158
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=5.4e-05 Score=79.96 Aligned_cols=373 Identities=11% Similarity=0.032 Sum_probs=217.7
Q ss_pred HHHHHHHhhcccccchhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhc-chhhhhhHHHHH
Q 003035 383 LYYFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAG-HIYSLAGLARAK 461 (855)
Q Consensus 383 l~~~La~~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~-~~~a~~~la~~~ 461 (855)
+-.-+|-.+...++ +++|...++.+...+.-+ +..+.+|++.++-.|+|.+|...-.+|-+-. -...++.+ .
T Consensus 59 ~~lWia~C~fhLgd-Y~~Al~~Y~~~~~~~~~~---~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhl---a 131 (557)
T KOG3785|consen 59 LQLWIAHCYFHLGD-YEEALNVYTFLMNKDDAP---AELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHL---A 131 (557)
T ss_pred HHHHHHHHHHhhcc-HHHHHHHHHHHhccCCCC---cccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHH---H
Confidence 44556667777788 999999999888732221 4577899999999999999998877653210 01122222 2
Q ss_pred HHhCChHHHHH---HHHhHHHcCCCchHHHHHHhhccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHH
Q 003035 462 YKVGQQYSAYK---LINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEI 538 (855)
Q Consensus 462 ~~~g~~~~A~~---~l~~~i~~~p~~~~~y~~~~~~~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~ 538 (855)
.+.|+-+.-.. .+....+..-..+.+...|..| ++|++.|.+.+.-+|+....-.++|.+|.+.+-++-+.+.+
T Consensus 132 hklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HY---QeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl 208 (557)
T KOG3785|consen 132 HKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHY---QEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVL 208 (557)
T ss_pred HHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHH---HHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHH
Confidence 23333222111 1122222222234455556666 78888888888888888777778888888888888888888
Q ss_pred HHHHccCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCchhhhh----cc----cchhHHHHHHHHHhhccChhh
Q 003035 539 DRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLAL-ESNYMMFH----GR----VSGDHLVKLLNHHVRSWSPAD 608 (855)
Q Consensus 539 ~k~l~~~p~-~~~l~lra~~y~~~gd~~~A~~~~~~aL~~-~P~~~~~~----~~----~~~~~l~~ll~~~~~~~~~a~ 608 (855)
+--+..-|+ +-+..+++.....+=+-..|+...+.+... +..++... .+ ...+.....+...+....++.
T Consensus 209 ~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEAR 288 (557)
T KOG3785|consen 209 KVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEAR 288 (557)
T ss_pred HHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhh
Confidence 777776664 455666666555554444455444444321 11221100 00 011111222222222222221
Q ss_pred hHHHHh-hhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHH-----------------------------------
Q 003035 609 CWIKLY-DRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLR----------------------------------- 652 (855)
Q Consensus 609 ~~~~~~-~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~----------------------------------- 652 (855)
.-+-+| -+-..+++ .+.-+-+.+|..+.-+...|.+...
T Consensus 289 lNL~iYyL~q~dVqe-----A~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQ 363 (557)
T KOG3785|consen 289 LNLIIYYLNQNDVQE-----AISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQ 363 (557)
T ss_pred hhheeeecccccHHH-----HHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchH
Confidence 111111 11111111 1222334455555555555554433
Q ss_pred --------cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh--HHHHHHHHHHHHCCC
Q 003035 653 --------LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF--EAFFLKAYILADTNL 722 (855)
Q Consensus 653 --------~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~--~a~~~lg~~~~~~g~ 722 (855)
..++++.+.++.......-++....+++++.....|++.+|.+.|-+.-...-.+ .-..-+|.+|...+.
T Consensus 364 smAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkk 443 (557)
T KOG3785|consen 364 SMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKK 443 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCC
Confidence 3445555666666556666677777899999999999999999987765544334 444568999999999
Q ss_pred CchhHHHHHHHHHHHhcCCCCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-cHH
Q 003035 723 DPESSTYVIQLLEEALRCPSDGLRKG---QALNNLGSIYVECGKLDQAENCYINALDIK-HTR 781 (855)
Q Consensus 723 ~~~A~~~~~~lle~al~~~~~~~~p~---~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~-~~~ 781 (855)
.+.|-.. +-+.- .|. ..+..++....+.+++--|.+.|...-.++ .++
T Consensus 444 P~lAW~~----~lk~~-------t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pE 495 (557)
T KOG3785|consen 444 PQLAWDM----MLKTN-------TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPE 495 (557)
T ss_pred chHHHHH----HHhcC-------CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcc
Confidence 9987766 33221 233 555566777777888777777777665555 444
No 159
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.57 E-value=2.8e-06 Score=83.99 Aligned_cols=209 Identities=14% Similarity=0.120 Sum_probs=108.7
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHccCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHH
Q 003035 519 KYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLL 597 (855)
Q Consensus 519 ~~~a~~~~~~~~~~~A~~~~~k~l~~~p~-~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll 597 (855)
+.||..|-..|-..-|.-+|.+++.+.|+ ++.+..+|..+...|+|+.|.+.++..+++||.
T Consensus 69 fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~----------------- 131 (297)
T COG4785 69 FERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT----------------- 131 (297)
T ss_pred HHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-----------------
Confidence 34455555555555555555555555553 344444555555555555555555555555444
Q ss_pred HHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 003035 598 NHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERL 677 (855)
Q Consensus 598 ~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~ 677 (855)
...++...|..++--|++.-|.+.+.+--+.+|++|..-
T Consensus 132 -----------------------------------------y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~ 170 (297)
T COG4785 132 -----------------------------------------YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRS 170 (297)
T ss_pred -----------------------------------------chHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHH
Confidence 333444455555666777777777777777777776543
Q ss_pred HHHHHHHHHCCCHHHHHHHH-HHHHhccCChHHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCH----HHHHH
Q 003035 678 VYEGWILYDTGHREEALSRA-EKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK----GQALN 752 (855)
Q Consensus 678 ~~lg~~~~~~g~~~eAl~~~-~kal~~~p~~~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p----~~a~~ 752 (855)
..+=.+-.+ =+..+|..-+ +++-..+.+...|+..+..+ |+..+ +. +++++..-..+...- .++++
T Consensus 171 LWLYl~E~k-~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL---gkiS~--e~---l~~~~~a~a~~n~~~Ae~LTEtyF 241 (297)
T COG4785 171 LWLYLNEQK-LDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL---GKISE--ET---LMERLKADATDNTSLAEHLTETYF 241 (297)
T ss_pred HHHHHHHhh-CCHHHHHHHHHHHHHhccHhhhhHHHHHHHH---hhccH--HH---HHHHHHhhccchHHHHHHHHHHHH
Confidence 322222222 2344444333 33433333333333322222 21111 11 133443211111111 17888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcc------cHHHHHHHHHHHHHcC
Q 003035 753 NLGSIYVECGKLDQAENCYINALDIK------HTRAHQGLARVYYLKN 794 (855)
Q Consensus 753 ~LG~~y~~~g~~~~A~~~~~kAL~~~------~~~a~~~lg~~~~~~g 794 (855)
.||..|...|+.++|...|+-|+.-+ +-.+.+.++.+.-.+.
T Consensus 242 YL~K~~l~~G~~~~A~~LfKLaiannVynfVE~RyA~~EL~~l~q~~~ 289 (297)
T COG4785 242 YLGKYYLSLGDLDEATALFKLAVANNVYNFVEHRYALLELSLLGQDQD 289 (297)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccc
Confidence 89999999999999999998888766 3345555555544443
No 160
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=1.2e-06 Score=90.25 Aligned_cols=175 Identities=17% Similarity=0.184 Sum_probs=142.8
Q ss_pred hHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc
Q 003035 625 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE 704 (855)
Q Consensus 625 al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~ 704 (855)
++..+....+.+|.+-...-.+|.+|+...++..|..+|++.-...|....-.++-++.++..+.+..|++........
T Consensus 29 aI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~- 107 (459)
T KOG4340|consen 29 AIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN- 107 (459)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC-
Confidence 4556666777788777778888888888888999999999988888888888888888889999998888887655443
Q ss_pred CCh--HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cH
Q 003035 705 RTF--EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HT 780 (855)
Q Consensus 705 p~~--~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~ 780 (855)
|.. ...-.-+.+.+..+++..+... +++.- .-...+..++.|-+..+.|++++|++-|+.|++.. ++
T Consensus 108 ~~L~~~~lqLqaAIkYse~Dl~g~rsL----veQlp-----~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp 178 (459)
T KOG4340|consen 108 PALHSRVLQLQAAIKYSEGDLPGSRSL----VEQLP-----SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP 178 (459)
T ss_pred HHHHHHHHHHHHHHhcccccCcchHHH----HHhcc-----CCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc
Confidence 333 5556667777788888887777 55543 22222788999999999999999999999999999 88
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 003035 781 RAHQGLARVYYLKNELKAAYDEMTKLLEK 809 (855)
Q Consensus 781 ~a~~~lg~~~~~~g~~~~A~~~~~kal~~ 809 (855)
-.-++++.++++.|+++.|+++..+.|+.
T Consensus 179 llAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 179 LLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred hhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 89999999999999999999999988875
No 161
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=6.4e-07 Score=93.92 Aligned_cols=109 Identities=17% Similarity=0.113 Sum_probs=102.3
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC---CHHHHHHHHHHHHh
Q 003035 626 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTG---HREEALSRAEKSIS 702 (855)
Q Consensus 626 l~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g---~~~eAl~~~~kal~ 702 (855)
+..++..+..+|+|+.-|..+|.+|+.+|++..|...|.+|+++.|++++.+..+|.+++.+. ...++...+++++.
T Consensus 142 ~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 142 IARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 345677889999999999999999999999999999999999999999999999999988764 46789999999999
Q ss_pred ccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHh
Q 003035 703 IERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEAL 738 (855)
Q Consensus 703 ~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al 738 (855)
.+|++ .+.+.+|..++.+|+|.+|+.. ++..+
T Consensus 222 ~D~~~iral~lLA~~afe~g~~~~A~~~----Wq~lL 254 (287)
T COG4235 222 LDPANIRALSLLAFAAFEQGDYAEAAAA----WQMLL 254 (287)
T ss_pred cCCccHHHHHHHHHHHHHcccHHHHHHH----HHHHH
Confidence 99999 9999999999999999999999 99998
No 162
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.3e-06 Score=94.73 Aligned_cols=141 Identities=19% Similarity=0.138 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 003035 676 RLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLG 755 (855)
Q Consensus 676 ~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~~a~~~LG 755 (855)
.....|..++..|+|..|+..|++++..-+.. ..-+.++.... . ++ ...+++||+
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~-----------~~~~~ee~~~~-----~-~~--------k~~~~lNlA 264 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYR-----------RSFDEEEQKKA-----E-AL--------KLACHLNLA 264 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhcc-----------ccCCHHHHHHH-----H-HH--------HHHHhhHHH
Confidence 44567899999999999999999988764321 00011111111 1 11 126899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh-----cCCHHH
Q 003035 756 SIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE-----YSDREM 828 (855)
Q Consensus 756 ~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~-----~g~~ee 828 (855)
.+|.++++|.+|+....++|+++ |..++|..|.++..+|+++.|+..|++++++.|+|-.+...+.. ....+.
T Consensus 265 ~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~k 344 (397)
T KOG0543|consen 265 ACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEK 344 (397)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 99999999999999999999999999999999999998888877 334455
Q ss_pred HHHHHHHHHhcCC
Q 003035 829 AKNDLNMATQLDP 841 (855)
Q Consensus 829 A~~~~~kAl~l~P 841 (855)
.++.|.+.+..-+
T Consensus 345 ekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 345 EKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHhhccc
Confidence 6788888887644
No 163
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.55 E-value=1.9e-07 Score=81.24 Aligned_cols=81 Identities=17% Similarity=0.176 Sum_probs=71.7
Q ss_pred HcCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHH
Q 003035 652 RLNCQKAAMRCLRLARNHSSS--EHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESST 728 (855)
Q Consensus 652 ~~g~~~~A~~~l~~al~~~p~--~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~ 728 (855)
.+|+++.|+..|+++++.+|. +...++.+|.+++.+|++++|+..+++ .+.+|.+ ...+.+|.++..+|++++|++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 566778899999999999999999999 8888888 888888999999999999999
Q ss_pred HHHHHHHHH
Q 003035 729 YVIQLLEEA 737 (855)
Q Consensus 729 ~~~~lle~a 737 (855)
. |+++
T Consensus 80 ~----l~~~ 84 (84)
T PF12895_consen 80 A----LEKA 84 (84)
T ss_dssp H----HHHH
T ss_pred H----HhcC
Confidence 9 8875
No 164
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.52 E-value=4e-07 Score=74.95 Aligned_cols=62 Identities=21% Similarity=0.248 Sum_probs=52.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCH
Q 003035 753 NLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSA 814 (855)
Q Consensus 753 ~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~ 814 (855)
.+|..+...|++++|+..|+++++.+ ++.+++.+|.++..+|++++|+..|+++++.+|++|
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 57888888999999999999999888 888899999999999999999999999999888875
No 165
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.51 E-value=7.1e-07 Score=96.53 Aligned_cols=176 Identities=19% Similarity=0.122 Sum_probs=130.6
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC-----Ch--HHHHHHHHHHHHCCCCchhH
Q 003035 655 CQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIER-----TF--EAFFLKAYILADTNLDPESS 727 (855)
Q Consensus 655 ~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p-----~~--~a~~~lg~~~~~~g~~~~A~ 727 (855)
++++|...|++| |..|...|++++|...|.++..+.- .. ..+...|.+|.+. ++++|+
T Consensus 30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai 94 (282)
T PF14938_consen 30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAI 94 (282)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHH
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHH
Confidence 566666666554 7788889999999999999877642 12 5566767777666 899999
Q ss_pred HHHHHHHHHHhcCCCCCCCHH---HHHHHHHHHHHHc-CCHHHHHHHHHHHHhcc--------cHHHHHHHHHHHHHcCC
Q 003035 728 TYVIQLLEEALRCPSDGLRKG---QALNNLGSIYVEC-GKLDQAENCYINALDIK--------HTRAHQGLARVYYLKNE 795 (855)
Q Consensus 728 ~~~~~lle~al~~~~~~~~p~---~a~~~LG~~y~~~-g~~~~A~~~~~kAL~~~--------~~~a~~~lg~~~~~~g~ 795 (855)
.. |++|+......-++. .++..+|.+|... |++++|+++|++|+++. ....+..+|.++...|+
T Consensus 95 ~~----~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~ 170 (282)
T PF14938_consen 95 EC----YEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGR 170 (282)
T ss_dssp HH----HHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-
T ss_pred HH----HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCC
Confidence 99 999985443333444 8899999999999 99999999999999875 24567899999999999
Q ss_pred HHHHHHHHHHHHHHccCC----HH---HHHHHhh----cCCHHHHHHHHHHHHhcCCCCcccchh
Q 003035 796 LKAAYDEMTKLLEKAQYS----AS---AFEKRSE----YSDREMAKNDLNMATQLDPLRTYPYRY 849 (855)
Q Consensus 796 ~~~A~~~~~kal~~~p~~----~~---a~~~lg~----~g~~eeA~~~~~kAl~l~P~~~~~~~~ 849 (855)
|++|++.|+++....-++ .. .+...+. .||...|...+++....+|......-+
T Consensus 171 y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~ 235 (282)
T PF14938_consen 171 YEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREY 235 (282)
T ss_dssp HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHH
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 999999999998853221 11 2222332 899999999999999999987655433
No 166
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.50 E-value=2.1e-06 Score=99.81 Aligned_cols=135 Identities=13% Similarity=0.067 Sum_probs=112.4
Q ss_pred cCCCChH--HHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHC--------CCHHHHHHHHHHHH
Q 003035 635 NDPGKSF--LRFRQSLLLLRLNC---QKAAMRCLRLARNHSSSEHERLVYEGWILYDT--------GHREEALSRAEKSI 701 (855)
Q Consensus 635 ~~p~~~~--~~~~~a~~l~~~g~---~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~--------g~~~eAl~~~~kal 701 (855)
.-|.+.. ..+..|.-++..++ ...|+.+|++|++++|+++.++-.++.++... ++...+.+..++++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3455544 45667777766554 78999999999999999999999888877553 23456777777777
Q ss_pred hc--cCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003035 702 SI--ERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDI 777 (855)
Q Consensus 702 ~~--~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~-~a~~~LG~~y~~~g~~~~A~~~~~kAL~~ 777 (855)
.+ .|.. .++..+|..+...|++++|... +++|+ .++|+ .+|..+|.++...|++++|++.|++|+.+
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~----l~rAl-----~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQA----INKAI-----DLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHH----HHHHH-----HcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 75 5555 8888899999999999999999 99999 88888 99999999999999999999999999999
Q ss_pred c
Q 003035 778 K 778 (855)
Q Consensus 778 ~ 778 (855)
+
T Consensus 483 ~ 483 (517)
T PRK10153 483 R 483 (517)
T ss_pred C
Confidence 9
No 167
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.48 E-value=1.5e-06 Score=92.19 Aligned_cols=101 Identities=12% Similarity=0.157 Sum_probs=91.2
Q ss_pred ChHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh----HHH
Q 003035 639 KSFLRFRQSLLL-LRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAF 710 (855)
Q Consensus 639 ~~~~~~~~a~~l-~~~g~~~~A~~~l~~al~~~p~~---~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~----~a~ 710 (855)
+....|..+..+ ++.|++++|+..|+..++..|+. +.+++.+|.+|+..|++++|+..|+++++.+|++ +++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 446677777765 67899999999999999999998 5899999999999999999999999999999885 999
Q ss_pred HHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH
Q 003035 711 FLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG 748 (855)
Q Consensus 711 ~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~ 748 (855)
+.+|.++..+|++++|... |++++ ...|+
T Consensus 221 ~klg~~~~~~g~~~~A~~~----~~~vi-----~~yP~ 249 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAV----YQQVI-----KKYPG 249 (263)
T ss_pred HHHHHHHHHcCCHHHHHHH----HHHHH-----HHCcC
Confidence 9999999999999999999 99999 66665
No 168
>PRK11906 transcriptional regulator; Provisional
Probab=98.48 E-value=5.1e-06 Score=92.24 Aligned_cols=156 Identities=15% Similarity=0.025 Sum_probs=116.7
Q ss_pred HHHHHHHHHcCC---HHHHHHHHHHHH---hcCCCcHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHhccCCh-
Q 003035 644 FRQSLLLLRLNC---QKAAMRCLRLAR---NHSSSEHERLVYEGWILYDT---------GHREEALSRAEKSISIERTF- 707 (855)
Q Consensus 644 ~~~a~~l~~~g~---~~~A~~~l~~al---~~~p~~~~~~~~lg~~~~~~---------g~~~eAl~~~~kal~~~p~~- 707 (855)
+..|.-.+..+. .+.|+..|.+++ +++|+.+.++-.+++++... .+..+|.+..++|++++|.+
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 555555544433 457788888888 88888888888888877653 24567888888888888888
Q ss_pred HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHH
Q 003035 708 EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAH 783 (855)
Q Consensus 708 ~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~ 783 (855)
.+++.+|.++...++++.|... |++|+ .++|+ .+|+..|.+..-.|+.++|.+.++++++++ ...+-
T Consensus 339 ~a~~~~g~~~~~~~~~~~a~~~----f~rA~-----~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 339 KILAIMGLITGLSGQAKVSHIL----FEQAK-----IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred HHHHHHHHHHHhhcchhhHHHH----HHHHh-----hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 8888888888888888888888 88888 88888 888888888888888888888888888888 22232
Q ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHH
Q 003035 784 QGLARV-YYLKNELKAAYDEMTKLLE 808 (855)
Q Consensus 784 ~~lg~~-~~~~g~~~~A~~~~~kal~ 808 (855)
...-++ .+-..-.+.|+..|-|-.+
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 410 VIKECVDMYVPNPLKNNIKLYYKETE 435 (458)
T ss_pred HHHHHHHHHcCCchhhhHHHHhhccc
Confidence 222233 4445567778877765444
No 169
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.48 E-value=0.0002 Score=71.86 Aligned_cols=168 Identities=27% Similarity=0.302 Sum_probs=134.7
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH-HHHHCCCHHHHHHHHHHHHhccCC---h-HHH
Q 003035 636 DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGW-ILYDTGHREEALSRAEKSISIERT---F-EAF 710 (855)
Q Consensus 636 ~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~-~~~~~g~~~eAl~~~~kal~~~p~---~-~a~ 710 (855)
.+.....++..+......+++..++..+.+++...+.........+. ++...|++++|+..+++++...|. . ..+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (291)
T COG0457 91 LPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEAL 170 (291)
T ss_pred ccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHH
Confidence 34455566667777777788889999999998888877666666666 889999999999999999887772 3 666
Q ss_pred HHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHH
Q 003035 711 FLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG---QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQG 785 (855)
Q Consensus 711 ~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~---~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~ 785 (855)
...+..+...++++.++.. +.+++ ...+. ..+..++..+...+++++|+..+.+++... ....+..
T Consensus 171 ~~~~~~~~~~~~~~~a~~~----~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 241 (291)
T COG0457 171 LALGALLEALGRYEEALEL----LEKAL-----KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYN 241 (291)
T ss_pred HHhhhHHHHhcCHHHHHHH----HHHHH-----hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhh
Confidence 7777778888899999988 88888 43333 678888999999999999999999999888 3677888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHccC
Q 003035 786 LARVYYLKNELKAAYDEMTKLLEKAQY 812 (855)
Q Consensus 786 lg~~~~~~g~~~~A~~~~~kal~~~p~ 812 (855)
++..+...++++.+...+.++++..|.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 242 LALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 888888667799999999999998887
No 170
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.48 E-value=4.3e-08 Score=102.30 Aligned_cols=192 Identities=9% Similarity=0.027 Sum_probs=141.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCC
Q 003035 644 FRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNL 722 (855)
Q Consensus 644 ~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~ 722 (855)
-.+|.-|+++|+|++|+.+|.+++..+|.++..+.+++..|++++.|..|......|+.++... .+|...|.+-...|.
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 4578889999999999999999999999999999999999999999999999999999999888 999999999999999
Q ss_pred CchhHHHHHHHHHHHhcCCCCCCCHH-----HHHHHH--------------------------------HHHHHHcCCHH
Q 003035 723 DPESSTYVIQLLEEALRCPSDGLRKG-----QALNNL--------------------------------GSIYVECGKLD 765 (855)
Q Consensus 723 ~~~A~~~~~~lle~al~~~~~~~~p~-----~a~~~L--------------------------------G~~y~~~g~~~ 765 (855)
..+|.+. ++.++ .+.|. ..+..+ |..+...|.++
T Consensus 181 ~~EAKkD----~E~vL-----~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~ 251 (536)
T KOG4648|consen 181 NMEAKKD----CETVL-----ALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRS 251 (536)
T ss_pred HHHHHHh----HHHHH-----hhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccc
Confidence 9999999 99998 66554 111111 33344444555
Q ss_pred HHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh----cCCHHHHHHHHHHHHhc
Q 003035 766 QAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQL 839 (855)
Q Consensus 766 ~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~----~g~~eeA~~~~~kAl~l 839 (855)
.++.+|...+... +...--+ +..+.+..+++.|+..-.+++..+|..-.+....|. .|...+++..++.++.+
T Consensus 252 ~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~ 330 (536)
T KOG4648|consen 252 VPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKV 330 (536)
T ss_pred cceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeee
Confidence 5555554444333 1111112 455556667777777777777766655443333333 67778888888888888
Q ss_pred CCCCcc
Q 003035 840 DPLRTY 845 (855)
Q Consensus 840 ~P~~~~ 845 (855)
.|.+-.
T Consensus 331 ~P~~~~ 336 (536)
T KOG4648|consen 331 APAVET 336 (536)
T ss_pred cccccc
Confidence 776543
No 171
>PRK11906 transcriptional regulator; Provisional
Probab=98.46 E-value=7.4e-06 Score=90.96 Aligned_cols=105 Identities=15% Similarity=0.094 Sum_probs=90.3
Q ss_pred hHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc
Q 003035 625 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE 704 (855)
Q Consensus 625 al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~ 704 (855)
+.....++++.+|.|+.+++.+|.++.-.++++.|...|++|+.++|+.+.+++..|+++...|+.++|++..+++++++
T Consensus 323 a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs 402 (458)
T PRK11906 323 ALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLE 402 (458)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCh-HHHHHHHHH-HHHCCCCchhHHH
Q 003035 705 RTF-EAFFLKAYI-LADTNLDPESSTY 729 (855)
Q Consensus 705 p~~-~a~~~lg~~-~~~~g~~~~A~~~ 729 (855)
|.- .+-..+-++ .+-..-.++|++.
T Consensus 403 P~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (458)
T PRK11906 403 PRRRKAVVIKECVDMYVPNPLKNNIKL 429 (458)
T ss_pred chhhHHHHHHHHHHHHcCCchhhhHHH
Confidence 987 443333333 3444455666665
No 172
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=3.1e-06 Score=88.82 Aligned_cols=114 Identities=19% Similarity=0.175 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCC---chhHHHHH
Q 003035 656 QKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLD---PESSTYVI 731 (855)
Q Consensus 656 ~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~---~~A~~~~~ 731 (855)
.+.-+.-++.-+..+|++.+.|..||.+|+.+|+++.|...|.+|+++.|++ +.+..+|.+++.+.+- .++...
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l-- 215 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL-- 215 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH--
Confidence 5566677888899999999999999999999999999999999999999999 9999999887665432 233333
Q ss_pred HHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 003035 732 QLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK 778 (855)
Q Consensus 732 ~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~ 778 (855)
|++++ ..+|+ .+...||..+++.|+|.+|+..+++.++..
T Consensus 216 --l~~al-----~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 216 --LRQAL-----ALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred --HHHHH-----hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 66666 66665 556666666666666666666666666554
No 173
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.43 E-value=1.6e-05 Score=92.95 Aligned_cols=225 Identities=16% Similarity=0.098 Sum_probs=170.1
Q ss_pred HhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHH
Q 003035 613 LYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREE 692 (855)
Q Consensus 613 ~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~e 692 (855)
+|+..++.+...+++...++++..|+...+....|+.+.++|+.++|..+++..-...+++...+-.+-.+|.++|++++
T Consensus 16 i~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 16 IYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhH
Confidence 34444444444578888999999999999999999999999999999999988888888888889999999999999999
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCC---------
Q 003035 693 ALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGK--------- 763 (855)
Q Consensus 693 Al~~~~kal~~~p~~~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~~a~~~LG~~y~~~g~--------- 763 (855)
|...|++++..+|+-+..+.+=.+|.+.+.|.+-.+.++++|+..- .+|--.|.-+..+......
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~p------k~~yyfWsV~Slilqs~~~~~~~~~~i~ 169 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFP------KRAYYFWSVISLILQSIFSENELLDPIL 169 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------cccchHHHHHHHHHHhccCCcccccchh
Confidence 9999999999999987777777888888888888888777777332 2233566666666554432
Q ss_pred HHHHHHHHHHHHhcc----cHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHccCCHHHHHHHhh-----cCCHHHHHHHH
Q 003035 764 LDQAENCYINALDIK----HTRAHQGLARVYYLKNELKAAYDEM-TKLLEKAQYSASAFEKRSE-----YSDREMAKNDL 833 (855)
Q Consensus 764 ~~~A~~~~~kAL~~~----~~~a~~~lg~~~~~~g~~~~A~~~~-~kal~~~p~~~~a~~~lg~-----~g~~eeA~~~~ 833 (855)
..-|..+.++.++.. ...=..-.-.++..+|++++|.+.+ -+..+..+..+.++.+++. .+++.+--+.-
T Consensus 170 l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~ 249 (932)
T KOG2053|consen 170 LALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELS 249 (932)
T ss_pred HHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHH
Confidence 334556666666554 1111223345778889999999998 4455556665555555444 78888888888
Q ss_pred HHHHhcCCCC
Q 003035 834 NMATQLDPLR 843 (855)
Q Consensus 834 ~kAl~l~P~~ 843 (855)
.+.+..++||
T Consensus 250 ~~Ll~k~~Dd 259 (932)
T KOG2053|consen 250 SRLLEKGNDD 259 (932)
T ss_pred HHHHHhCCcc
Confidence 8888888888
No 174
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.42 E-value=0.00053 Score=78.25 Aligned_cols=255 Identities=15% Similarity=0.068 Sum_probs=126.6
Q ss_pred HHhCCHHHHHHHHHHHHccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccC
Q 003035 526 MEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWS 605 (855)
Q Consensus 526 ~~~~~~~~A~~~~~k~l~~~p~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~ 605 (855)
+..+++.+|+.+++.+-..+.....+...|.-|...|+|+-|.+.|.++=.. .+ ....|.
T Consensus 743 i~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~-~d-------------------ai~my~ 802 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLF-KD-------------------AIDMYG 802 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchh-HH-------------------HHHHHh
Confidence 4456777777777766655544455556677788888888888777654211 01 011122
Q ss_pred hhhhHHHHhhhcccccccchHH--HHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH----------HhcCCC-
Q 003035 606 PADCWIKLYDRWSSVDDIGSLA--VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLA----------RNHSSS- 672 (855)
Q Consensus 606 ~a~~~~~~~~~~~~~~d~~al~--~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~a----------l~~~p~- 672 (855)
++..|.+.+........-++.. .+.++-+.+ ...-+...-.+|...|.++.|++.|.+. -+..|+
T Consensus 803 k~~kw~da~kla~e~~~~e~t~~~yiakaedld--ehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~ 880 (1636)
T KOG3616|consen 803 KAGKWEDAFKLAEECHGPEATISLYIAKAEDLD--EHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDH 880 (1636)
T ss_pred ccccHHHHHHHHHHhcCchhHHHHHHHhHHhHH--hhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhh
Confidence 2222322222110000000000 011111110 0000111112344455555566555542 112232
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCchhH------------HHHHHHHHHHhcC
Q 003035 673 EHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESS------------TYVIQLLEEALRC 740 (855)
Q Consensus 673 ~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~~a~~~lg~~~~~~g~~~~A~------------~~~~~lle~al~~ 740 (855)
-++.+..+|.-+...|+...|...|-++-.... -...|...+.+++|. +.+.-++-+.+
T Consensus 881 l~dt~~~f~~e~e~~g~lkaae~~flea~d~ka-------avnmyk~s~lw~dayriaktegg~n~~k~v~flwaksi-- 951 (1636)
T KOG3616|consen 881 LHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKA-------AVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSI-- 951 (1636)
T ss_pred hhHHHHHHHHHHHhccChhHHHHHHHhhhhHHH-------HHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhh--
Confidence 356667788888889999988888877633211 111222223333222 22222222333
Q ss_pred CCCCCCHH-HHHHHHHHHHH------HcCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCC
Q 003035 741 PSDGLRKG-QALNNLGSIYV------ECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS 813 (855)
Q Consensus 741 ~~~~~~p~-~a~~~LG~~y~------~~g~~~~A~~~~~kAL~~~~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~ 813 (855)
.-+.. ..++.+|.+.. +.+-++-|.+.-+-+.+-.-+.++..++..+...|++++|-+.|-.+|+++.-|
T Consensus 952 ---ggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 952 ---GGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred ---CcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence 11111 34444443322 234555555555555444466788888888999999999999999999887655
Q ss_pred H
Q 003035 814 A 814 (855)
Q Consensus 814 ~ 814 (855)
.
T Consensus 1029 i 1029 (1636)
T KOG3616|consen 1029 I 1029 (1636)
T ss_pred c
Confidence 3
No 175
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.40 E-value=2.8e-05 Score=94.34 Aligned_cols=207 Identities=13% Similarity=0.079 Sum_probs=179.7
Q ss_pred hHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCcHH----HHHHHHHHHHHCCCHHHHHHHHHH
Q 003035 625 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARN-HSSSEHE----RLVYEGWILYDTGHREEALSRAEK 699 (855)
Q Consensus 625 al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~-~~p~~~~----~~~~lg~~~~~~g~~~eAl~~~~k 699 (855)
+.+-+.+.+..+|+.+..|.+.-...++.++.++|.+..++|+. +++...+ .|..+-++...-|.-+.-.+.|++
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 45678889999999999999988889999999999999999996 5665543 444445555556777888899999
Q ss_pred HHhccCChHHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003035 700 SISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDI 777 (855)
Q Consensus 700 al~~~p~~~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~ 777 (855)
|.+.......|..|.-+|...+++++|.+. |+..+ +.... ..|..+|..++.+.+-++|...+.+||+-
T Consensus 1523 Acqycd~~~V~~~L~~iy~k~ek~~~A~el----l~~m~-----KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1523 ACQYCDAYTVHLKLLGIYEKSEKNDEADEL----LRLML-----KKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS 1593 (1710)
T ss_pred HHHhcchHHHHHHHHHHHHHhhcchhHHHH----HHHHH-----HHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence 998876568899999999999999999999 99888 33333 89999999999999999999999999986
Q ss_pred c----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh----cCCHHHHHHHHHHHHhcC
Q 003035 778 K----HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLD 840 (855)
Q Consensus 778 ~----~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~----~g~~eeA~~~~~kAl~l~ 840 (855)
- |.......|..-++.|+.+.+...|+-.+.-.|.-.+.|.-+.+ .|+.+-++..|++++.+.
T Consensus 1594 lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1594 LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 5 78888899999999999999999999999999999999988888 889999999999999874
No 176
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.40 E-value=7.4e-07 Score=77.54 Aligned_cols=79 Identities=22% Similarity=0.219 Sum_probs=60.9
Q ss_pred HCCCHHHHHHHHHHHHhccCC--h-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHH
Q 003035 686 DTGHREEALSRAEKSISIERT--F-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVE 760 (855)
Q Consensus 686 ~~g~~~eAl~~~~kal~~~p~--~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~ 760 (855)
++|++++|+..|+++++..|. + ..++.+|.+|...|++++|+.. +++ + ..++. .....+|.++.+
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~----~~~-~-----~~~~~~~~~~~l~a~~~~~ 70 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIEL----LQK-L-----KLDPSNPDIHYLLARCLLK 70 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHH----HHC-H-----THHHCHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHH----HHH-h-----CCCCCCHHHHHHHHHHHHH
Confidence 468888999999999988884 3 6677788888888888888888 776 5 55554 666677888888
Q ss_pred cCCHHHHHHHHHHH
Q 003035 761 CGKLDQAENCYINA 774 (855)
Q Consensus 761 ~g~~~~A~~~~~kA 774 (855)
+|++++|+++|+++
T Consensus 71 l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 71 LGKYEEAIKALEKA 84 (84)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred hCCHHHHHHHHhcC
Confidence 88888888888775
No 177
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.35 E-value=1e-05 Score=75.00 Aligned_cols=89 Identities=17% Similarity=0.075 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC---h-HHHHHH
Q 003035 641 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERT---F-EAFFLK 713 (855)
Q Consensus 641 ~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~---~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~---~-~a~~~l 713 (855)
.++|..|..+-..|+.++|+..|++++....+. ..++..+|..+..+|++++|+..+++++...|+ + .....+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 356778888888888888888888888865443 456778888888888888888888888888777 4 666677
Q ss_pred HHHHHHCCCCchhHHH
Q 003035 714 AYILADTNLDPESSTY 729 (855)
Q Consensus 714 g~~~~~~g~~~~A~~~ 729 (855)
+.++...|++++|+..
T Consensus 82 Al~L~~~gr~~eAl~~ 97 (120)
T PF12688_consen 82 ALALYNLGRPKEALEW 97 (120)
T ss_pred HHHHHHCCCHHHHHHH
Confidence 8888888888888888
No 178
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.31 E-value=6.6e-05 Score=79.63 Aligned_cols=168 Identities=20% Similarity=0.150 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH------HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC--------
Q 003035 641 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH------ERLVYEGWILYDTGHREEALSRAEKSISIERT-------- 706 (855)
Q Consensus 641 ~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~------~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~-------- 706 (855)
..+..++..++.++.+++++++|++|+++.-++. .+...+|..+-..+++++|+.+..+|.++-.+
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 4556678889999999999999999998754433 45688999999999999999999999887432
Q ss_pred -h--HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCC-CCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--
Q 003035 707 -F--EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDG-LRKG--QALNNLGSIYVECGKLDQAENCYINALDIK-- 778 (855)
Q Consensus 707 -~--~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~-~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~-- 778 (855)
. .+.+.++.++..+|..-+|.++ .+++.+..-.. -++. ....-+|++|...|+.+.|..-|+.|...-
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~----C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~ 278 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMEC----CEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMAS 278 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHH----HHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh
Confidence 1 5678899999999999999999 66665222111 1111 556678999999999999999999998754
Q ss_pred ------cHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHccC
Q 003035 779 ------HTRAHQGLARVYYLKNELK-----AAYDEMTKLLEKAQY 812 (855)
Q Consensus 779 ------~~~a~~~lg~~~~~~g~~~-----~A~~~~~kal~~~p~ 812 (855)
...++.+.+..+....-.. .|++.-++++++...
T Consensus 279 ~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~ 323 (518)
T KOG1941|consen 279 LGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASS 323 (518)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHH
Confidence 4567778887776654333 499999999887654
No 179
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.31 E-value=7.8e-07 Score=93.08 Aligned_cols=100 Identities=20% Similarity=0.314 Sum_probs=91.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh----cCC
Q 003035 752 NNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSD 825 (855)
Q Consensus 752 ~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~----~g~ 825 (855)
-..|..|+++|+|++|++||.+++..+ ++-.+-|.+.+|.++..+..|....+.|+.++..+..+|..+|. +|+
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 457899999999999999999999999 88889999999999999999999999999999999999999998 999
Q ss_pred HHHHHHHHHHHHhcCCCCcccchhhh
Q 003035 826 REMAKNDLNMATQLDPLRTYPYRYRA 851 (855)
Q Consensus 826 ~eeA~~~~~kAl~l~P~~~~~~~~~a 851 (855)
.++|+++++.+|++.|.+..--+--|
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ELkK~~a 206 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIELKKSLA 206 (536)
T ss_pred HHHHHHhHHHHHhhCcccHHHHHHHH
Confidence 99999999999999998654433333
No 180
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.31 E-value=8.3e-07 Score=101.61 Aligned_cols=70 Identities=17% Similarity=0.091 Sum_probs=56.9
Q ss_pred CCCCCCcEEEEEcCeEEEeeehhhhcCCHHHHHhhcCCCccCCC------------CeeEecCCCCCHHHHHHHHHHhcc
Q 003035 213 SLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKR------------KTIDFSHDGVSVEGLRAVEVYTRT 280 (855)
Q Consensus 213 ~~~~~~~V~f~v~~~~~~aHr~vLaa~S~~F~~mf~~~~~E~~~------------~~I~l~~~~is~~~~~~ll~y~YT 280 (855)
..|.+.||||.||++.|+|||.||++||++|+.+|...-.-+.. .+|.+ .++.|..|..+|+||||
T Consensus 554 ~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~v--e~i~p~mfe~lL~~iYt 631 (1267)
T KOG0783|consen 554 YKDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRV--EDIPPLMFEILLHYIYT 631 (1267)
T ss_pred cccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeee--ccCCHHHHHHHHHHHhc
Confidence 34556679999999999999999999999999999754332221 24556 89999999999999999
Q ss_pred CCCC
Q 003035 281 SRVD 284 (855)
Q Consensus 281 g~l~ 284 (855)
+++-
T Consensus 632 dt~~ 635 (1267)
T KOG0783|consen 632 DTLL 635 (1267)
T ss_pred cccc
Confidence 9753
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.30 E-value=2.4e-06 Score=70.88 Aligned_cols=66 Identities=20% Similarity=0.117 Sum_probs=59.9
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHH
Q 003035 650 LLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAY 715 (855)
Q Consensus 650 l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~ 715 (855)
++..|++++|++.|+++++.+|++.++++.+|.++..+|++++|.+.+++++..+|++ ..+..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 4678999999999999999999999999999999999999999999999999999998 66666554
No 182
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.30 E-value=0.0006 Score=78.96 Aligned_cols=415 Identities=15% Similarity=0.090 Sum_probs=208.6
Q ss_pred hhcccccchhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhcchhhhhhHHHHHHHhCChHH
Q 003035 390 VAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYS 469 (855)
Q Consensus 390 ~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~ 469 (855)
++.+.++ .++|..+|.+--+.+ .|-.+|-.+|.+++|.+.-+.-=.+.--..++.-|.-+...++...
T Consensus 809 LAieLgM-lEeA~~lYr~ckR~D-----------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~ 876 (1416)
T KOG3617|consen 809 LAIELGM-LEEALILYRQCKRYD-----------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEA 876 (1416)
T ss_pred HHHHHhh-HHHHHHHHHHHHHHH-----------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHH
Confidence 3455566 777777776654432 3555677778888777655432111111245566666666777777
Q ss_pred HHHHHHhH----------HHcCCCchHHHHHH----------hhc----cCcchHHHHHHHHHHhCCCCchhHHHHHHHH
Q 003035 470 AYKLINSI----------ISEHKPTGWMYQER----------SLY----NLGREKIVDLNYASELDPTLSFPYKYRAVAK 525 (855)
Q Consensus 470 A~~~l~~~----------i~~~p~~~~~y~~~----------~~~----~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~ 525 (855)
|++.|++. +..+|+....|..+ +.| ++.+.|+..|.+|-. |+-+.++.
T Consensus 877 AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------~fs~VrI~ 948 (1416)
T KOG3617|consen 877 ALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------YFSMVRIK 948 (1416)
T ss_pred HHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------hhhheeeE
Confidence 77776653 33344333222221 222 333444444444432 33334444
Q ss_pred HHhCCHHHHHHHHHHHHccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCchhhhh--cc---c-chhHH
Q 003035 526 MEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLAL------ESNYMMFH--GR---V-SGDHL 593 (855)
Q Consensus 526 ~~~~~~~~A~~~~~k~l~~~p~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~------~P~~~~~~--~~---~-~~~~l 593 (855)
.-+|+.++|-.+-++. -+..+-+.+|+.|...|+..+|+..|.++-+. ..++-+-. .+ + +...+
T Consensus 949 C~qGk~~kAa~iA~es----gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~ 1024 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEES----GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDL 1024 (1416)
T ss_pred eeccCchHHHHHHHhc----ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhH
Confidence 4455555554433221 23344455689999999999999888876543 22211100 00 0 00000
Q ss_pred H---HHHHHHhhccChhhhHHHHhhhccccc----------ccchHHHHHHHHHcCC-CChHHHHHHHHHHHHcCCHHHH
Q 003035 594 V---KLLNHHVRSWSPADCWIKLYDRWSSVD----------DIGSLAVINQMLINDP-GKSFLRFRQSLLLLRLNCQKAA 659 (855)
Q Consensus 594 ~---~ll~~~~~~~~~a~~~~~~~~~~~~~~----------d~~al~~~~~~l~~~p-~~~~~~~~~a~~l~~~g~~~~A 659 (855)
. ..+.+... .++....+|-+.+-.. ...++..+.+- .+| .++.+..+.+..+....+|++|
T Consensus 1025 v~aArYyEe~g~---~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~D--Ld~~sDp~ll~RcadFF~~~~qyekA 1099 (1416)
T KOG3617|consen 1025 VSAARYYEELGG---YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKD--LDAGSDPKLLRRCADFFENNQQYEKA 1099 (1416)
T ss_pred HHHHHHHHHcch---hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHh--cCCCCCHHHHHHHHHHHHhHHHHHHH
Confidence 0 00111111 1122223333322211 11223333322 234 3677888888888888889888
Q ss_pred HHHHH------HHHhcC----------------------CCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc----
Q 003035 660 MRCLR------LARNHS----------------------SSE---HERLVYEGWILYDTGHREEALSRAEKSISIE---- 704 (855)
Q Consensus 660 ~~~l~------~al~~~----------------------p~~---~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~---- 704 (855)
...+- .|+++. |+. .+.+..+|.++.++|.|..|-+.|.+|=..-
T Consensus 1100 V~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMr 1179 (1416)
T KOG3617|consen 1100 VNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMR 1179 (1416)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHH
Confidence 76553 444331 111 3456789999999999999999997763210
Q ss_pred ----C-C------------hHHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH-HHHHHHHHHHHH------
Q 003035 705 ----R-T------------FEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG-QALNNLGSIYVE------ 760 (855)
Q Consensus 705 ----p-~------------~~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~-~a~~~LG~~y~~------ 760 (855)
. + ..-.|.+|..|.+.-++.+--+. ++..+ ..... +++-.||..|..
T Consensus 1180 aLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~----mK~I~-----tFYTKgqafd~LanFY~~cAqiEi 1250 (1416)
T KOG3617|consen 1180 ALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQT----MKDIE-----TFYTKGQAFDHLANFYKSCAQIEI 1250 (1416)
T ss_pred HHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHH----HhhhH-----hhhhcchhHHHHHHHHHHHHHhhH
Confidence 0 0 01122344445555555555555 44444 22222 566666666542
Q ss_pred ---------cCCHHHHHHHHHHHHhcc-cHHHHHHHHHHH-----------HHcCCHHHHHHHHHHHHHHccCCH-----
Q 003035 761 ---------CGKLDQAENCYINALDIK-HTRAHQGLARVY-----------YLKNELKAAYDEMTKLLEKAQYSA----- 814 (855)
Q Consensus 761 ---------~g~~~~A~~~~~kAL~~~-~~~a~~~lg~~~-----------~~~g~~~~A~~~~~kal~~~p~~~----- 814 (855)
+|-.++|.+|+.|+-+.+ ....+.+|-.-. ..+.|....+...+..++ .|+.+
T Consensus 1251 ee~q~ydKa~gAl~eA~kCl~ka~~k~~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lle-ep~ld~~Ir~ 1329 (1416)
T KOG3617|consen 1251 EELQTYDKAMGALEEAAKCLLKAEQKNMSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLE-EPILDDIIRC 1329 (1416)
T ss_pred HHHhhhhHHhHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh-CcCCCCcchh
Confidence 244555566666665544 222333221111 111244444444444443 34332
Q ss_pred -HHHHHHhh----cCCHHHHHHHHHHHHhcCCCC
Q 003035 815 -SAFEKRSE----YSDREMAKNDLNMATQLDPLR 843 (855)
Q Consensus 815 -~a~~~lg~----~g~~eeA~~~~~kAl~l~P~~ 843 (855)
..+-.|-+ ..+|..|-..++..-...|+-
T Consensus 1330 ~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~~ 1363 (1416)
T KOG3617|consen 1330 TRLFALLIEDHVSRKNYKPAYRALTELQKKVPNV 1363 (1416)
T ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCcc
Confidence 22222222 788888888887777777753
No 183
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.28 E-value=7e-06 Score=76.14 Aligned_cols=98 Identities=21% Similarity=0.167 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh----HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHHHH
Q 003035 675 ERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQA 750 (855)
Q Consensus 675 ~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~----~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~~a 750 (855)
.++|.+|+++...|+.++|+..|++++....+. .++..+|..+...|++++|+.. +++++....+.-....+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~----L~~~~~~~p~~~~~~~l 77 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALAL----LEEALEEFPDDELNAAL 77 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHH----HHHHHHHCCCccccHHH
Confidence 467888888888888888888888888864333 7788888888888888888888 88887321111111255
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003035 751 LNNLGSIYVECGKLDQAENCYINALD 776 (855)
Q Consensus 751 ~~~LG~~y~~~g~~~~A~~~~~kAL~ 776 (855)
...++.++...|++++|++.+-.++.
T Consensus 78 ~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 78 RVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55677788888888888888766654
No 184
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.27 E-value=3e-05 Score=75.23 Aligned_cols=126 Identities=19% Similarity=0.197 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh---HHHHHHHHHH
Q 003035 642 LRFRQSLLLLRLNCQKAAMRCLRLARN-HSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF---EAFFLKAYIL 717 (855)
Q Consensus 642 ~~~~~a~~l~~~g~~~~A~~~l~~al~-~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~---~a~~~lg~~~ 717 (855)
-++++|..+.+.|++.+|...|++++. +..+++..+..++...+..+++..|...+++..+.+|.. +....+|.+|
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l 170 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL 170 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHH
Confidence 367788888889999999999988876 567788888888888999999999999999999888877 7788888889
Q ss_pred HHCCCCchhHHHHHHHHHHHhcCCCCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003035 718 ADTNLDPESSTYVIQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALD 776 (855)
Q Consensus 718 ~~~g~~~~A~~~~~~lle~al~~~~~~~~p~-~a~~~LG~~y~~~g~~~~A~~~~~kAL~ 776 (855)
..+|.+.+|... |+.++ ...|+ ++-...|..+..+|+.++|..-|....+
T Consensus 171 aa~g~~a~Aesa----fe~a~-----~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 171 AAQGKYADAESA----FEVAI-----SYYPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HhcCCchhHHHH----HHHHH-----HhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 999999988888 99998 77777 7777788888888888888776655544
No 185
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.27 E-value=0.00013 Score=75.31 Aligned_cols=163 Identities=15% Similarity=0.175 Sum_probs=110.1
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh----HHHH
Q 003035 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFF 711 (855)
Q Consensus 639 ~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~---~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~----~a~~ 711 (855)
-+..++..|...++.|++++|...|+.+....|.. ..+...++.++++.+++++|+...++-+.++|.+ .+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 34578899999999999999999999999988765 4667899999999999999999999999999987 7888
Q ss_pred HHHHHHHHC----CCCchhHHHHHHHHHHHhcC-CCCCCCHH-------------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 003035 712 LKAYILADT----NLDPESSTYVIQLLEEALRC-PSDGLRKG-------------QALNNLGSIYVECGKLDQAENCYIN 773 (855)
Q Consensus 712 ~lg~~~~~~----g~~~~A~~~~~~lle~al~~-~~~~~~p~-------------~a~~~LG~~y~~~g~~~~A~~~~~k 773 (855)
.+|.++... .+...+...++.-|++.+.. |.++..++ .--..+|..|.+.|.+-.|+.-++.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 899887654 23344444445558888832 22222222 0111234555555555555555555
Q ss_pred HHhcc-----cHHHHHHHHHHHHHcCCHHHHHH
Q 003035 774 ALDIK-----HTRAHQGLARVYYLKNELKAAYD 801 (855)
Q Consensus 774 AL~~~-----~~~a~~~lg~~~~~~g~~~~A~~ 801 (855)
+++-. -..++..+..+|..+|-.++|..
T Consensus 193 v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~ 225 (254)
T COG4105 193 VLENYPDTSAVREALARLEEAYYALGLTDEAKK 225 (254)
T ss_pred HHhccccccchHHHHHHHHHHHHHhCChHHHHH
Confidence 55443 22344555555555555554433
No 186
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.26 E-value=7e-06 Score=87.20 Aligned_cols=100 Identities=15% Similarity=0.105 Sum_probs=87.1
Q ss_pred HHHHHHHHHH-HHCCCCchhHHHHHHHHHHHhcCCCCCCCHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc---
Q 003035 708 EAFFLKAYIL-ADTNLDPESSTYVIQLLEEALRCPSDGLRKG-----QALNNLGSIYVECGKLDQAENCYINALDIK--- 778 (855)
Q Consensus 708 ~a~~~lg~~~-~~~g~~~~A~~~~~~lle~al~~~~~~~~p~-----~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--- 778 (855)
...|..|..+ ...|+|++|+.. |++.+ ...|+ .+++.+|.+|...|++++|+..|+++++..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~a----f~~fl-----~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s 213 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVA----FQNFV-----KKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS 213 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHH----HHHHH-----HHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 5667777765 567899999999 99999 55554 789999999999999999999999999876
Q ss_pred --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHH
Q 003035 779 --HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASA 816 (855)
Q Consensus 779 --~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a 816 (855)
.+.+++.+|.++..+|++++|...|+++++..|+...+
T Consensus 214 ~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 214 PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 57899999999999999999999999999999987654
No 187
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.00015 Score=74.47 Aligned_cols=249 Identities=14% Similarity=0.148 Sum_probs=141.1
Q ss_pred hhhhcHHHHHHHHHHHHHh-cchhhhhhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHhhc----cCcchHHHHH
Q 003035 430 FEREEYKDACYYFEAAADA-GHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLY----NLGREKIVDL 504 (855)
Q Consensus 430 l~~g~~~eA~~~~~~Al~~-~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~~----~~~~~A~~~l 504 (855)
+-.|.|..++..-++.-.. ........++|.|+.+|++..-+..+...- .|+.. +......| +..++-+..+
T Consensus 19 fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~--~~~lq-Avr~~a~~~~~e~~~~~~~~~l 95 (299)
T KOG3081|consen 19 FYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIKEGK--ATPLQ-AVRLLAEYLELESNKKSILASL 95 (299)
T ss_pred HHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccccccccc--CChHH-HHHHHHHHhhCcchhHHHHHHH
Confidence 3346776555544443322 233445667788888887654443332211 11110 11111111 1112222222
Q ss_pred HHHHHh--CCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchh
Q 003035 505 NYASEL--DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYM 582 (855)
Q Consensus 505 ~~a~~l--dP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~ 582 (855)
...+.. +-++......-|.++++.+++++|+....+. .+.++..+.-.|..++.+.+-|...+++...++.+..
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~t 171 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDAT 171 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH
Confidence 222221 2223234444567999999999999877662 2456666667889999999999999999888776532
Q ss_pred hhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 003035 583 MFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRC 662 (855)
Q Consensus 583 ~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~ 662 (855)
. .+ -|..|..+......+.| +.-+++.+-+..|..+.....++.+.+.+|++++|...
T Consensus 172 L-------tQ-------------LA~awv~la~ggek~qd--AfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~l 229 (299)
T KOG3081|consen 172 L-------TQ-------------LAQAWVKLATGGEKIQD--AFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESL 229 (299)
T ss_pred H-------HH-------------HHHHHHHHhccchhhhh--HHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHH
Confidence 1 11 13345544443333332 34455555555666677777777777777777777777
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHH-HHHHhccCCh
Q 003035 663 LRLARNHSSSEHERLVYEGWILYDTGHREEALSRA-EKSISIERTF 707 (855)
Q Consensus 663 l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~-~kal~~~p~~ 707 (855)
++.++..++++++.+.++-.+-..+|...++...+ .+....+|+.
T Consensus 230 L~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 230 LEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 77777777777777777777777777665554433 3333444544
No 188
>PRK15331 chaperone protein SicA; Provisional
Probab=98.24 E-value=1e-05 Score=78.02 Aligned_cols=101 Identities=5% Similarity=-0.130 Sum_probs=93.9
Q ss_pred HcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHH
Q 003035 634 INDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFL 712 (855)
Q Consensus 634 ~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~ 712 (855)
...++.-...+..|.-++.+|++++|...|+-+...+|.+++-++.||.++..+|+|++|+..|.-+..+.+++ ...|.
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 34444556678889999999999999999999999999999999999999999999999999999999999998 99999
Q ss_pred HHHHHHHCCCCchhHHHHHHHHHHHh
Q 003035 713 KAYILADTNLDPESSTYVIQLLEEAL 738 (855)
Q Consensus 713 lg~~~~~~g~~~~A~~~~~~lle~al 738 (855)
.|.+|...|+...|... |+.++
T Consensus 111 agqC~l~l~~~~~A~~~----f~~a~ 132 (165)
T PRK15331 111 TGQCQLLMRKAAKARQC----FELVN 132 (165)
T ss_pred HHHHHHHhCCHHHHHHH----HHHHH
Confidence 99999999999999999 99999
No 189
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.23 E-value=0.025 Score=68.03 Aligned_cols=436 Identities=18% Similarity=0.130 Sum_probs=246.2
Q ss_pred hHHHHHHHHh-hchhhHHHHHHHHHHhhhhHh-hhhcHHHHHHHHHHHHHhcc--------hhhhhhHHHHHHHhCChHH
Q 003035 400 TTVMLLERLG-ECSTERWQRMLALHQLGCVMF-EREEYKDACYYFEAAADAGH--------IYSLAGLARAKYKVGQQYS 469 (855)
Q Consensus 400 ~a~~~le~~~-~~~~~~~~~~~a~~~LG~~~l-~~g~~~eA~~~~~~Al~~~~--------~~a~~~la~~~~~~g~~~~ 469 (855)
.|++.|+-+. +..+.+.+.+.+...+|.+++ ...++++|+.++++++.... ......+++++...|...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 5677777777 556666677888999999998 68999999999999986532 124467799999888887
Q ss_pred HHHHHHhHHHcCCC---chHHHHHHhh-------ccCcchHHHHHHHHHHhC--CCCchh----HHHHHHHHHHhCCHHH
Q 003035 470 AYKLINSIISEHKP---TGWMYQERSL-------YNLGREKIVDLNYASELD--PTLSFP----YKYRAVAKMEEGQIRA 533 (855)
Q Consensus 470 A~~~l~~~i~~~p~---~~~~y~~~~~-------~~~~~~A~~~l~~a~~ld--P~~~~a----~~~~a~~~~~~~~~~~ 533 (855)
|...+++.|+...+ ..|.|.-+-. .++...|++.+++...+. +++... ....+.+....+..++
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 99999998877544 5676644321 135667888888888765 344433 2334567777888888
Q ss_pred HHHHHHHHHc----c--CCC-----HhHHH--HHHHHHHHcCCHHHHHHHHHHH---HhcCCchh---h--hhccc--ch
Q 003035 534 AISEIDRIIV----F--KLS-----VDCLE--LRAWLFIAADDYESALRDTLAL---LALESNYM---M--FHGRV--SG 590 (855)
Q Consensus 534 A~~~~~k~l~----~--~p~-----~~~l~--lra~~y~~~gd~~~A~~~~~~a---L~~~P~~~---~--~~~~~--~~ 590 (855)
+++.+++++. . +|+ ...+. +.-.++...|+++.+...++++ +...-+.. . -.+.+ ..
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~ 277 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNI 277 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeec
Confidence 9988888843 1 222 12222 2344677888877765554433 32221110 0 00000 00
Q ss_pred --hH-HHHHHHHHhhccCh-hhhHHHHhh------hcccccc------cchHHHHHHHH-H--cCCCC------------
Q 003035 591 --DH-LVKLLNHHVRSWSP-ADCWIKLYD------RWSSVDD------IGSLAVINQML-I--NDPGK------------ 639 (855)
Q Consensus 591 --~~-l~~ll~~~~~~~~~-a~~~~~~~~------~~~~~~d------~~al~~~~~~l-~--~~p~~------------ 639 (855)
.. -.... ...-.|-. .+.+.-.|- ......+ -.++..+.+.+ . ..|..
T Consensus 278 ~~~~~~~~~~-~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~ 356 (608)
T PF10345_consen 278 GEGSSNSGGT-PLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWL 356 (608)
T ss_pred ccccccCCCc-eeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHH
Confidence 00 00000 00001110 000000000 0000000 01122333333 1 11111
Q ss_pred ----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CC------cHHHHHHHHHHHHHCCCHHHHHHHHH--------
Q 003035 640 ----SFLRFRQSLLLLRLNCQKAAMRCLRLARNHS---SS------EHERLVYEGWILYDTGHREEALSRAE-------- 698 (855)
Q Consensus 640 ----~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~---p~------~~~~~~~lg~~~~~~g~~~eAl~~~~-------- 698 (855)
-...+.++...+-.+++..|...++.+.+.. |. .+..++..|..+...|+.+.|+..|.
T Consensus 357 ~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~ 436 (608)
T PF10345_consen 357 RYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCE 436 (608)
T ss_pred HHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhh
Confidence 1234455666677899999999988877653 22 46778999999999999999999998
Q ss_pred HHHhccCCh----HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHH--HcCCHHHHHHH
Q 003035 699 KSISIERTF----EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYV--ECGKLDQAENC 770 (855)
Q Consensus 699 kal~~~p~~----~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~--~~g~~~~A~~~ 770 (855)
.+....+.. -+..++..++...+.........-.++++.-....+..... .++..+-.++. ..-...++...
T Consensus 437 ~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~ 516 (608)
T PF10345_consen 437 AANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRH 516 (608)
T ss_pred hhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHH
Confidence 444455544 45567788888777665533230011333321111111111 22222222222 12234467777
Q ss_pred HHHHHhcc---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCC---HHHHHHH-hh---------cCCHHH
Q 003035 771 YINALDIK---------HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS---ASAFEKR-SE---------YSDREM 828 (855)
Q Consensus 771 ~~kAL~~~---------~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~---~~a~~~l-g~---------~g~~ee 828 (855)
+.++++.. -.-++.-+|..++ .|+..+..+...++....... ...+..+ +. .|+.++
T Consensus 517 l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~k 595 (608)
T PF10345_consen 517 LQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDK 595 (608)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHH
Confidence 77666543 2235666777777 788888777777777654443 4444311 11 899999
Q ss_pred HHHHHHHHHh
Q 003035 829 AKNDLNMATQ 838 (855)
Q Consensus 829 A~~~~~kAl~ 838 (855)
|.....+.-.
T Consensus 596 a~~~~~~~~~ 605 (608)
T PF10345_consen 596 AEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHH
Confidence 9888776543
No 190
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.19 E-value=0.0029 Score=73.59 Aligned_cols=293 Identities=13% Similarity=0.083 Sum_probs=158.7
Q ss_pred HHHHHHHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhcchhhhhhHHHHHHHhCChHHHHHHHHhHHHc
Q 003035 401 TVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISE 480 (855)
Q Consensus 401 a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~ 480 (855)
.+..+.++.+.+.+.. + ..+.+..+.|..++|...|++.- -+-.+..+|..+|..++|++..+.-=..
T Consensus 788 gaRAlR~a~q~~~e~e----a--kvAvLAieLgMlEeA~~lYr~ck------R~DLlNKlyQs~g~w~eA~eiAE~~DRi 855 (1416)
T KOG3617|consen 788 GARALRRAQQNGEEDE----A--KVAVLAIELGMLEEALILYRQCK------RYDLLNKLYQSQGMWSEAFEIAETKDRI 855 (1416)
T ss_pred hHHHHHHHHhCCcchh----h--HHHHHHHHHhhHHHHHHHHHHHH------HHHHHHHHHHhcccHHHHHHHHhhccce
Confidence 3455666665443221 1 35566788899999999998864 3445678888889888887653321111
Q ss_pred CCCchHHHHHHhhccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHH----------HccCC----
Q 003035 481 HKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRI----------IVFKL---- 546 (855)
Q Consensus 481 ~p~~~~~y~~~~~~~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~----------l~~~p---- 546 (855)
+-. ..|++.|.-+-..++.+.|++.|+|+ |+.+|
T Consensus 856 HLr--------------------------------~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e 903 (1416)
T KOG3617|consen 856 HLR--------------------------------NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIE 903 (1416)
T ss_pred ehh--------------------------------hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHH
Confidence 111 12233333333344444444444332 11111
Q ss_pred -------CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhccc
Q 003035 547 -------SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSS 619 (855)
Q Consensus 547 -------~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~ 619 (855)
++..+..-|.+....|+.+.|+..|..+-....- +.... ..++..+|
T Consensus 904 ~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~-------VrI~C-------~qGk~~kA------------ 957 (1416)
T KOG3617|consen 904 QYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSM-------VRIKC-------IQGKTDKA------------ 957 (1416)
T ss_pred HHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhh-------eeeEe-------eccCchHH------------
Confidence 2233344477788888888888888776532110 00000 00111111
Q ss_pred ccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------C--CcHHHHH------------H
Q 003035 620 VDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHS------S--SEHERLV------------Y 679 (855)
Q Consensus 620 ~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~------p--~~~~~~~------------~ 679 (855)
..+.....+-.+-|.+|..|-..|+..+|+..|.+|.... . +..+-+. .
T Consensus 958 -----------a~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~ 1026 (1416)
T KOG3617|consen 958 -----------ARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVS 1026 (1416)
T ss_pred -----------HHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHH
Confidence 1122334555566777777777888888877776654321 1 1111111 1
Q ss_pred HHHHHHHCC-CHHHHHHHHHHH------H-----------------hccCCh--HHHHHHHHHHHHCCCCchhHHHHH--
Q 003035 680 EGWILYDTG-HREEALSRAEKS------I-----------------SIERTF--EAFFLKAYILADTNLDPESSTYVI-- 731 (855)
Q Consensus 680 lg~~~~~~g-~~~eAl~~~~ka------l-----------------~~~p~~--~a~~~lg~~~~~~g~~~~A~~~~~-- 731 (855)
-+..|...| +.+.|...|.+| + .++|+. ..+..-+..+....+|++|...+.
T Consensus 1027 aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1027 AARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred HHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 223333444 555555555432 1 224544 555566777788888888876521
Q ss_pred HHHHHHhcC-----------------CCCCCCHH-----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003035 732 QLLEEALRC-----------------PSDGLRKG-----QALNNLGSIYVECGKLDQAENCYINA 774 (855)
Q Consensus 732 ~lle~al~~-----------------~~~~~~p~-----~a~~~LG~~y~~~g~~~~A~~~~~kA 774 (855)
+.|+.|+.. |..+-.|. +.+-.+|.+..++|.|..|-+-|.+|
T Consensus 1107 r~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1107 REFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 234555431 11111222 88999999999999999998888765
No 191
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.17 E-value=7.6e-06 Score=69.91 Aligned_cols=62 Identities=32% Similarity=0.499 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 003035 749 QALNNLGSIYVECGKLDQAENCYINALDIK---------HTRAHQGLARVYYLKNELKAAYDEMTKLLEKA 810 (855)
Q Consensus 749 ~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~---------~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~ 810 (855)
.+++++|.+|..+|++++|+++|++++++. -..+++++|.++..+|++++|++++++++++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 689999999999999999999999999874 14678999999999999999999999999874
No 192
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.16 E-value=8.2e-06 Score=68.65 Aligned_cols=68 Identities=22% Similarity=0.269 Sum_probs=61.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHH
Q 003035 647 SLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKA 714 (855)
Q Consensus 647 a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg 714 (855)
..++++.+++++|++.++.++..+|+++..++.+|.++..+|++++|+..++++++..|+. .+....+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999999999999988 5554443
No 193
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=1.7e-05 Score=86.08 Aligned_cols=124 Identities=14% Similarity=0.096 Sum_probs=93.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------c--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-
Q 003035 644 FRQSLLLLRLNCQKAAMRCLRLARNHSSS-------E--------HERLVYEGWILYDTGHREEALSRAEKSISIERTF- 707 (855)
Q Consensus 644 ~~~a~~l~~~g~~~~A~~~l~~al~~~p~-------~--------~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~- 707 (855)
-..|..+++.|+|..|...|++++..-.. . .-.+.+++.++..+++|.+|+....++|.++|++
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~ 291 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV 291 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch
Confidence 34678899999999999999998865321 1 1235778888888888888888888888888888
Q ss_pred HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHH-HHHHHHHHh
Q 003035 708 EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQA-ENCYINALD 776 (855)
Q Consensus 708 ~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A-~~~~~kAL~ 776 (855)
.++|..|.++..+|+++.|... |++++ .++|+ .+...|..+-.+..++.+. .+.|.+...
T Consensus 292 KALyRrG~A~l~~~e~~~A~~d----f~ka~-----k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDD----FQKAL-----KLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHH----HHHHH-----HhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888888888888888888888 88888 77777 6666676666655544333 555555554
No 194
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.12 E-value=0.00019 Score=69.84 Aligned_cols=151 Identities=12% Similarity=0.018 Sum_probs=122.8
Q ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-cCCh-HHHHHHHHHHHHCCCCchhHHH
Q 003035 652 RLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI-ERTF-EAFFLKAYILADTNLDPESSTY 729 (855)
Q Consensus 652 ~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~-~p~~-~a~~~lg~~~~~~g~~~~A~~~ 729 (855)
+.=+++.+.+...+.++..|.. .-.+.+|..+...|++.||..+|++++.- .-++ .....++.+....+++.+|...
T Consensus 68 q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~t 146 (251)
T COG4700 68 QKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQT 146 (251)
T ss_pred HhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHH
Confidence 3345666777777777878864 34568999999999999999999999985 4444 7778889999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003035 730 VIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK-HTRAHQGLARVYYLKNELKAAYDEMTKLLE 808 (855)
Q Consensus 730 ~~~lle~al~~~~~~~~p~~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~-~~~a~~~lg~~~~~~g~~~~A~~~~~kal~ 808 (855)
+++..+.+.....| +....+|.+|...|++.+|...|+.++... .+.+.-.+|..+.++|+.++|..-+..+.+
T Consensus 147 ----Le~l~e~~pa~r~p-d~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 147 ----LEDLMEYNPAFRSP-DGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred ----HHHHhhcCCccCCC-CchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 99999444333333 566678999999999999999999999998 888888899999999988888777665554
No 195
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=0.0019 Score=66.65 Aligned_cols=267 Identities=13% Similarity=0.067 Sum_probs=164.7
Q ss_pred HHHHHHhCCHHHHHHHHHHHHccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHh
Q 003035 522 AVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHV 601 (855)
Q Consensus 522 a~~~~~~~~~~~A~~~~~k~l~~~p~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~ 601 (855)
.+-++-.|.|.+++....+.-.-+...+....+++.|+++|.+...+..+...- .| ..+...++....
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~--~~----------~lqAvr~~a~~~ 82 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIKEGK--AT----------PLQAVRLLAEYL 82 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccccccccc--CC----------hHHHHHHHHHHh
Confidence 445666788888887766665444345555566788899998877665443221 11 111122222222
Q ss_pred hccChhhhHHHHhhhcccccccchHHH-HHHHHH-cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 003035 602 RSWSPADCWIKLYDRWSSVDDIGSLAV-INQMLI-NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVY 679 (855)
Q Consensus 602 ~~~~~a~~~~~~~~~~~~~~d~~al~~-~~~~l~-~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~ 679 (855)
......+.. ++. ...++. .+..+...+..-|.+++..|++++|++.+... .+-++...
T Consensus 83 ~~e~~~~~~---------------~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al 142 (299)
T KOG3081|consen 83 ELESNKKSI---------------LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAAL 142 (299)
T ss_pred hCcchhHHH---------------HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHH
Confidence 111111100 111 111222 22334455666678888999999998877662 34556666
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhccCChHHHHHHHHHHHH----CCCCchhHHHHHHHHHHHhcCCCCC-CCHH-HHHHH
Q 003035 680 EGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILAD----TNLDPESSTYVIQLLEEALRCPSDG-LRKG-QALNN 753 (855)
Q Consensus 680 lg~~~~~~g~~~eAl~~~~kal~~~p~~~a~~~lg~~~~~----~g~~~~A~~~~~~lle~al~~~~~~-~~p~-~a~~~ 753 (855)
-..++.++.+++-|.+..++..+++.+. ....+|.++.+ .++..+|.-. |++.- + ..|. ...+.
T Consensus 143 ~VqI~lk~~r~d~A~~~lk~mq~ided~-tLtQLA~awv~la~ggek~qdAfyi----feE~s-----~k~~~T~~llnG 212 (299)
T KOG3081|consen 143 NVQILLKMHRFDLAEKELKKMQQIDEDA-TLTQLAQAWVKLATGGEKIQDAFYI----FEELS-----EKTPPTPLLLNG 212 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccchHH-HHHHHHHHHHHHhccchhhhhHHHH----HHHHh-----cccCCChHHHcc
Confidence 6778888888999999888888886554 33334444332 3345666666 88776 4 5555 77788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHccCCHHHHHHHhhcCCHHHHH
Q 003035 754 LGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAA-YDEMTKLLEKAQYSASAFEKRSEYSDREMAK 830 (855)
Q Consensus 754 LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A-~~~~~kal~~~p~~~~a~~~lg~~g~~eeA~ 830 (855)
.+.+...+|++++|...++.||..+ ++.++-|+-..-...|.-.++ .....+....+|+.+.+ .++.+..
T Consensus 213 ~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v-------k~~~eke 285 (299)
T KOG3081|consen 213 QAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV-------KHLNEKE 285 (299)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH-------HHHHHHH
Confidence 8888888999999999999998888 888888888877777855444 44555666667776654 2344444
Q ss_pred HHHHHHH
Q 003035 831 NDLNMAT 837 (855)
Q Consensus 831 ~~~~kAl 837 (855)
..|+++.
T Consensus 286 aeFDrl~ 292 (299)
T KOG3081|consen 286 AEFDRLV 292 (299)
T ss_pred HHHHHHH
Confidence 4555443
No 196
>PRK15331 chaperone protein SicA; Provisional
Probab=98.11 E-value=2.4e-05 Score=75.53 Aligned_cols=107 Identities=13% Similarity=0.052 Sum_probs=90.5
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCC
Q 003035 663 LRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCP 741 (855)
Q Consensus 663 l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~ 741 (855)
+..+..+.++.-+..+..|.-++.+|++++|...|+-..-.+|.+ ..++.+|.++..+++|++|+.. |-.+.
T Consensus 26 lk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~----Y~~A~--- 98 (165)
T PRK15331 26 LKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDL----YAVAF--- 98 (165)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHH----HHHHH---
Confidence 445566777778888999999999999999999999999999888 8889999999999999999998 88888
Q ss_pred CCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 003035 742 SDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK 778 (855)
Q Consensus 742 ~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~ 778 (855)
.++++ ...+..|.||..+|+.++|..+|+.+++..
T Consensus 99 --~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~~ 135 (165)
T PRK15331 99 --TLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNERT 135 (165)
T ss_pred --HcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHhCc
Confidence 55444 567788999999999999999999888854
No 197
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.11 E-value=4.2e-05 Score=85.47 Aligned_cols=111 Identities=14% Similarity=0.108 Sum_probs=77.5
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHH
Q 003035 651 LRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTY 729 (855)
Q Consensus 651 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~ 729 (855)
...++++.|+..|++..+.+|+ +...++.++...++..+|++.+.+++..+|.+ ..+...+..+...++++.|+..
T Consensus 180 ~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~i 256 (395)
T PF09295_consen 180 SLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEI 256 (395)
T ss_pred hhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3456677777777777766653 44556777777777777777777777777766 6666777777777777777777
Q ss_pred HHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHH
Q 003035 730 VIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYIN 773 (855)
Q Consensus 730 ~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~k 773 (855)
.++++ ...|+ ..|..|+.+|...|+++.|+-.++.
T Consensus 257 ----Ak~av-----~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 257 ----AKKAV-----ELSPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred ----HHHHH-----HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 77777 66666 6777777777777777777665543
No 198
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.10 E-value=4.8e-05 Score=69.54 Aligned_cols=94 Identities=23% Similarity=0.229 Sum_probs=50.0
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH-HHHHHHHHHH
Q 003035 681 GWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG-QALNNLGSIY 758 (855)
Q Consensus 681 g~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~-~a~~~LG~~y 758 (855)
|..+...|+.+.|++.|.+++.+-|.. .+|++.+.++.-+|+.++|+.. +++|++...+..... +++...|.+|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdD----Ln~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDD----LNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHH----HHHHHHhcCccchHHHHHHHHHHHHH
Confidence 444445555555555555555555555 5555555555555555555555 555553333332222 5566666666
Q ss_pred HHcCCHHHHHHHHHHHHhcc
Q 003035 759 VECGKLDQAENCYINALDIK 778 (855)
Q Consensus 759 ~~~g~~~~A~~~~~kAL~~~ 778 (855)
..+|+.+.|...|+.|-++.
T Consensus 126 Rl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHhCchHHHHHhHHHHHHhC
Confidence 66666666666666555544
No 199
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.09 E-value=0.0015 Score=80.07 Aligned_cols=216 Identities=12% Similarity=0.066 Sum_probs=152.9
Q ss_pred chHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHc-cCCCH--hHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003035 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIV-FKLSV--DCLELRAWLFIAADDYESALRDTLAL 574 (855)
Q Consensus 498 ~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~-~~p~~--~~l~lra~~y~~~gd~~~A~~~~~~a 574 (855)
.+..+++++.+.-+|+....|..--.-.++.++.++|.+..+++|. +++.. +-+.. =..|..+.+.-.-.+.++
T Consensus 1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNi-WiA~lNlEn~yG~eesl~-- 1517 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNI-WIAYLNLENAYGTEESLK-- 1517 (1710)
T ss_pred CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHH-HHHHHhHHHhhCcHHHHH--
Confidence 3456788888888999998887777777888888999988888886 55421 11110 001111111000001111
Q ss_pred HhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcC
Q 003035 575 LALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLN 654 (855)
Q Consensus 575 L~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g 654 (855)
. ++.++-+.. +--..|..+.-+|...+
T Consensus 1518 -------------------------------------k---------------VFeRAcqyc-d~~~V~~~L~~iy~k~e 1544 (1710)
T KOG1070|consen 1518 -------------------------------------K---------------VFERACQYC-DAYTVHLKLLGIYEKSE 1544 (1710)
T ss_pred -------------------------------------H---------------HHHHHHHhc-chHHHHHHHHHHHHHhh
Confidence 1 111111111 11124555666788888
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh---HHHHHHHHHHHHCCCCchhHHHHH
Q 003035 655 CQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF---EAFFLKAYILADTNLDPESSTYVI 731 (855)
Q Consensus 655 ~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~---~a~~~lg~~~~~~g~~~~A~~~~~ 731 (855)
++++|.++|+..++........|...|..++++++-+.|...+.+|++.-|.. +..-..|..-++.|+.+.+...
T Consensus 1545 k~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtl-- 1622 (1710)
T KOG1070|consen 1545 KNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTL-- 1622 (1710)
T ss_pred cchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHH--
Confidence 88899999998888888888888888999999988889999999999888874 7777788888888998888888
Q ss_pred HHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 003035 732 QLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK 778 (855)
Q Consensus 732 ~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~ 778 (855)
|+-.+ .-.|. +.|+-+.+.-.+.|+.+.+...|++++.+.
T Consensus 1623 --fEgll-----~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1623 --FEGLL-----SAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred --HHHHH-----hhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 88888 66766 888888888888888888999999998887
No 200
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.07 E-value=2.1e-05 Score=81.66 Aligned_cols=97 Identities=14% Similarity=0.119 Sum_probs=91.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh----HHHHHHHH
Q 003035 643 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFFLKAY 715 (855)
Q Consensus 643 ~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~---~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~----~a~~~lg~ 715 (855)
.|..|.-++..|+|..|...|..-++..|+. +.++|.||.+++.+|++++|...|..+++-.|+. ++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7888999999999999999999999998875 6889999999999999999999999999999987 99999999
Q ss_pred HHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH
Q 003035 716 ILADTNLDPESSTYVIQLLEEALRCPSDGLRKG 748 (855)
Q Consensus 716 ~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~ 748 (855)
+..++|+.++|-.+ |++++ ...|+
T Consensus 224 ~~~~l~~~d~A~at----l~qv~-----k~YP~ 247 (262)
T COG1729 224 SLGRLGNTDEACAT----LQQVI-----KRYPG 247 (262)
T ss_pred HHHHhcCHHHHHHH----HHHHH-----HHCCC
Confidence 99999999999999 99999 66665
No 201
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.05 E-value=0.0044 Score=66.84 Aligned_cols=291 Identities=18% Similarity=0.100 Sum_probs=176.7
Q ss_pred hhcccccchhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhcchhhhhhHHHHH---HHhCC
Q 003035 390 VAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAK---YKVGQ 466 (855)
Q Consensus 390 ~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~~~a~~~la~~~---~~~g~ 466 (855)
++...|+ -..|.++-.+.-+.-.++ +....+..-+..-+-.|+|+.|.+-|+..+.- |..-+.+|=.+| ...|.
T Consensus 93 iAagAGd-a~lARkmt~~~~~llssD-qepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~Ga 169 (531)
T COG3898 93 IAAGAGD-ASLARKMTARASKLLSSD-QEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGA 169 (531)
T ss_pred hhhccCc-hHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhccc
Confidence 3444555 555666655555432222 12334445566677788888888888876642 222333433333 24455
Q ss_pred hHHHHHHHHhHHHcCCCchHHHHHHhhccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHcc--
Q 003035 467 QYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVF-- 544 (855)
Q Consensus 467 ~~~A~~~l~~~i~~~p~~~~~y~~~~~~~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~-- 544 (855)
.+.|...-+.+....| +...+....-......|+++.|+..++....-
T Consensus 170 reaAr~yAe~Aa~~Ap------------------------------~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v 219 (531)
T COG3898 170 REAARHYAERAAEKAP------------------------------QLPWAARATLEARCAAGDWDGALKLVDAQRAAKV 219 (531)
T ss_pred HHHHHHHHHHHHhhcc------------------------------CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHh
Confidence 5555554444444444 44444433344567789999998887765431
Q ss_pred -CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhccccccc
Q 003035 545 -KLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDI 623 (855)
Q Consensus 545 -~p~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~ 623 (855)
.++. +-..++.++-. +|. ..+.- |..
T Consensus 220 ie~~~-aeR~rAvLLtA-----kA~----s~lda-------------------------------------------dp~ 246 (531)
T COG3898 220 IEKDV-AERSRAVLLTA-----KAM----SLLDA-------------------------------------------DPA 246 (531)
T ss_pred hchhh-HHHHHHHHHHH-----HHH----HHhcC-------------------------------------------ChH
Confidence 1110 00001100000 000 00000 111
Q ss_pred chHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHH-HHHHHHHHh
Q 003035 624 GSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEA-LSRAEKSIS 702 (855)
Q Consensus 624 ~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA-l~~~~kal~ 702 (855)
.+.....+.++..|+-...-..-+..+++.|+..++-..++.+.+..|.. +++ +..++.+.|+.... ++-.++..+
T Consensus 247 ~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP-~ia--~lY~~ar~gdta~dRlkRa~~L~s 323 (531)
T COG3898 247 SARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP-DIA--LLYVRARSGDTALDRLKRAKKLES 323 (531)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh-HHH--HHHHHhcCCCcHHHHHHHHHHHHh
Confidence 12334456777888888888888889999999999999999999998853 322 22334445543222 233344556
Q ss_pred ccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH-HHHHHHHHHHHHc-CCHHHHHHHHHHHHhcc
Q 003035 703 IERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG-QALNNLGSIYVEC-GKLDQAENCYINALDIK 778 (855)
Q Consensus 703 ~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~-~a~~~LG~~y~~~-g~~~~A~~~~~kAL~~~ 778 (855)
+.|++ +..+..+..-...|++..|... -+.+. ...|. .++..|+++-... |+-.++...+-++++.-
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~----Aeaa~-----r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAK----AEAAA-----REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHH----HHHHh-----hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 78888 8999999999999999999988 88888 78887 8888888887665 88889988888888765
No 202
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.04 E-value=7.9e-05 Score=79.04 Aligned_cols=194 Identities=16% Similarity=0.077 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH---HHHHHHHHCCCHHHHHHHHHHHHhc----cCCh---HHHH
Q 003035 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLV---YEGWILYDTGHREEALSRAEKSISI----ERTF---EAFF 711 (855)
Q Consensus 642 ~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~---~lg~~~~~~g~~~eAl~~~~kal~~----~p~~---~a~~ 711 (855)
-+...|.-++..+++++|+....+.+..-.+.-..+. .+..++.++|+|++++...--.++. +... +++.
T Consensus 8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~l 87 (518)
T KOG1941|consen 8 KQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYL 87 (518)
T ss_pred HHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677788888999999888888876655444443 3457788899998887765544443 3222 8888
Q ss_pred HHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--------cHH
Q 003035 712 LKAYILADTNLDPESSTYVIQLLEEALRCPSDGL--RKGQALNNLGSIYVECGKLDQAENCYINALDIK--------HTR 781 (855)
Q Consensus 712 ~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~--~p~~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--------~~~ 781 (855)
+++..+...-++.+++.+ -..-+..|.... .++++...+|..+..++.++++++.|++|+.+. ..+
T Consensus 88 nlar~~e~l~~f~kt~~y----~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 88 NLARSNEKLCEFHKTISY----CKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHhhhHHHH----HHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 999999999999999988 777776664433 233777889999999999999999999999876 246
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHccCC----------HHHHHHHhh----cCCHHHHHHHHHHHHhc
Q 003035 782 AHQGLARVYYLKNELKAAYDEMTKLLEKAQYS----------ASAFEKRSE----YSDREMAKNDLNMATQL 839 (855)
Q Consensus 782 a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~----------~~a~~~lg~----~g~~eeA~~~~~kAl~l 839 (855)
++..+|..+....|+++|.-+..+|.++-.+. .-++++++. .|..-.|.++-++|.++
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 78899999999999999999999998875432 234455555 77777788887777766
No 203
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.04 E-value=0.00038 Score=71.85 Aligned_cols=183 Identities=13% Similarity=0.036 Sum_probs=115.4
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHccCCC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhH
Q 003035 517 PYKYRAVAKMEEGQIRAAISEIDRIIVFKLS----VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDH 592 (855)
Q Consensus 517 a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~----~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~ 592 (855)
-++..|...++.|++++|+..|+++....|. ..+....+..+.+.++|++|+..+++.+.+.|.++...- +.+
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY---~~Y 112 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADY---AYY 112 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhH---HHH
Confidence 3566788889999999999999999987773 467778899999999999999999999999998752110 011
Q ss_pred HHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 003035 593 LVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS 672 (855)
Q Consensus 593 l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~ 672 (855)
+..+. .. ....... + ...-...+...+...+...|+...+--....+ ..++..
T Consensus 113 lkgLs-~~-~~i~~~~-------r-Dq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i-----------~~~~d~------ 165 (254)
T COG4105 113 LKGLS-YF-FQIDDVT-------R-DQSAARAAFAAFKELVQRYPNSRYAPDAKARI-----------VKLNDA------ 165 (254)
T ss_pred HHHHH-Hh-ccCCccc-------c-CHHHHHHHHHHHHHHHHHCCCCcchhhHHHHH-----------HHHHHH------
Confidence 11111 00 0000000 0 00000113344555555555543221111100 001000
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh----HHHHHHHHHHHHCCCCchhHHH
Q 003035 673 EHERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFFLKAYILADTNLDPESSTY 729 (855)
Q Consensus 673 ~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~----~a~~~lg~~~~~~g~~~~A~~~ 729 (855)
-+.--+..|..|.+.|.+..|+.-+++.++-.|+. +++..+..+|...|..++|...
T Consensus 166 LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 166 LAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence 11222567888888888888888888888887765 8888888888888888888776
No 204
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.02 E-value=0.0086 Score=64.70 Aligned_cols=63 Identities=16% Similarity=0.089 Sum_probs=48.6
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHccCCCHhHHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCchh
Q 003035 519 KYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFI--AADDYESALRDTLALLALESNYM 582 (855)
Q Consensus 519 ~~~a~~~~~~~~~~~A~~~~~k~l~~~p~~~~l~lra~~y~--~~gd~~~A~~~~~~aL~~~P~~~ 582 (855)
..-++.-+-.|+++.|.+-|+-++. +|....+.+||.+.. .+|+.+.|..+-..+-...|.-.
T Consensus 124 lLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~ 188 (531)
T COG3898 124 LLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLP 188 (531)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCc
Confidence 3346667779999999999998886 566777778877654 67999999988888887777643
No 205
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.01 E-value=2.8e-05 Score=65.35 Aligned_cols=64 Identities=17% Similarity=0.248 Sum_probs=44.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHH
Q 003035 755 GSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFE 818 (855)
Q Consensus 755 G~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~ 818 (855)
..+|...+++++|+++++++++++ ++..+..+|.++..+|++.+|++.++++++..|+++.+..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 456667777777777777777776 6667777777777777777777777777777776666544
No 206
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.01 E-value=2.5e-05 Score=76.56 Aligned_cols=92 Identities=22% Similarity=0.252 Sum_probs=80.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcc-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh---
Q 003035 753 NLGSIYVECGKLDQAENCYINALDIK-------HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE--- 822 (855)
Q Consensus 753 ~LG~~y~~~g~~~~A~~~~~kAL~~~-------~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~--- 822 (855)
.=|.-++..|+|++|..-|..||++- ....|.|.|.++.+++.++.|++...|+|+++|.+..++..++.
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 45777888999999999999999876 23467789999999999999999999999999999999998888
Q ss_pred -cCCHHHHHHHHHHHHhcCCCCc
Q 003035 823 -YSDREMAKNDLNMATQLDPLRT 844 (855)
Q Consensus 823 -~g~~eeA~~~~~kAl~l~P~~~ 844 (855)
+..+++|+.+|.+.++++|.+.
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchH
Confidence 7889999999999999999865
No 207
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.00 E-value=2.2e-05 Score=87.23 Aligned_cols=69 Identities=12% Similarity=-0.017 Sum_probs=66.6
Q ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH---HHHHHHHHHHCCCHHHHHHHHHHHHhc
Q 003035 635 NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHER---LVYEGWILYDTGHREEALSRAEKSISI 703 (855)
Q Consensus 635 ~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~---~~~lg~~~~~~g~~~eAl~~~~kal~~ 703 (855)
.+|+++..++.+|..|..+|++++|+..|+++++++|+++++ |+++|.+|..+|++++|+..+++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 579999999999999999999999999999999999999865 999999999999999999999999997
No 208
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.97 E-value=8.8e-05 Score=67.86 Aligned_cols=92 Identities=16% Similarity=0.113 Sum_probs=85.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-----HHHHHHHHHH
Q 003035 643 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-----EAFFLKAYIL 717 (855)
Q Consensus 643 ~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-----~a~~~lg~~~ 717 (855)
.-..|..+...|+.+.|++.|.+++.+.|..+.+|++.++.+.-+|+.++|+..+.+++++.-+. .++...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 34567888999999999999999999999999999999999999999999999999999986443 8899999999
Q ss_pred HHCCCCchhHHHHHHHHHHHh
Q 003035 718 ADTNLDPESSTYVIQLLEEAL 738 (855)
Q Consensus 718 ~~~g~~~~A~~~~~~lle~al 738 (855)
...|+.+.|... |+.|-
T Consensus 126 Rl~g~dd~AR~D----Fe~AA 142 (175)
T KOG4555|consen 126 RLLGNDDAARAD----FEAAA 142 (175)
T ss_pred HHhCchHHHHHh----HHHHH
Confidence 999999999999 99987
No 209
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.97 E-value=7.6e-05 Score=83.41 Aligned_cols=106 Identities=18% Similarity=0.189 Sum_probs=96.6
Q ss_pred hHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc
Q 003035 625 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE 704 (855)
Q Consensus 625 al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~ 704 (855)
++..++++.+.+|+ ....++.+++..++..+|++.+.++++.+|.+.+.+...+..+...++++.|+...++++++.
T Consensus 188 ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls 264 (395)
T PF09295_consen 188 AIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELS 264 (395)
T ss_pred HHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 56778888888876 455678888889999999999999999999999999999999999999999999999999999
Q ss_pred CCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHH
Q 003035 705 RTF-EAFFLKAYILADTNLDPESSTYVIQLLEEA 737 (855)
Q Consensus 705 p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~a 737 (855)
|+. ..|+.|+.+|...|+++.|+.. ++..
T Consensus 265 P~~f~~W~~La~~Yi~~~d~e~ALla----LNs~ 294 (395)
T PF09295_consen 265 PSEFETWYQLAECYIQLGDFENALLA----LNSC 294 (395)
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHH----HhcC
Confidence 999 9999999999999999999988 7643
No 210
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.96 E-value=1.6e-05 Score=65.87 Aligned_cols=63 Identities=19% Similarity=0.218 Sum_probs=49.0
Q ss_pred HHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHh
Q 003035 759 VECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS 821 (855)
Q Consensus 759 ~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg 821 (855)
.+.|++++|++.|+++++.+ +..+++.+|.++...|++++|...+++++..+|+++.++..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 46778888888888888877 7888888888888888888888888888888888776665544
No 211
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.94 E-value=5.9e-05 Score=73.96 Aligned_cols=107 Identities=20% Similarity=0.224 Sum_probs=88.8
Q ss_pred HHHHHHHHCCCCchhHHHHHHHHHHHhc-CCCCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHH
Q 003035 712 LKAYILADTNLDPESSTYVIQLLEEALR-CPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLA 787 (855)
Q Consensus 712 ~lg~~~~~~g~~~~A~~~~~~lle~al~-~~~~~~~p~-~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg 787 (855)
.-|.-++..|+|.+|.+. |..||. ||+....-. -.|.|.|.++.++++++.|++...|||+++ +..++...|
T Consensus 100 ~EGN~~F~ngdyeeA~sk----Y~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRA 175 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSK----YQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRA 175 (271)
T ss_pred HHHHHhhhcccHHHHHHH----HHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHH
Confidence 346667777888888888 888883 222111111 678899999999999999999999999999 889999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh
Q 003035 788 RVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE 822 (855)
Q Consensus 788 ~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~ 822 (855)
.+|.++..+++|++.|+++++++|..-.+......
T Consensus 176 eayek~ek~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 99999999999999999999999998877766665
No 212
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.94 E-value=6.3e-06 Score=83.40 Aligned_cols=112 Identities=21% Similarity=0.263 Sum_probs=66.0
Q ss_pred EEEeeehhhhcCCHHHHHhhcCCCccCCC---------CeeEecCCCCCHHHHH-HHHHHhccCCCCCCCHHHHHHHHHH
Q 003035 228 EISFVRNKIASLSSPFKAMLYGGFVESKR---------KTIDFSHDGVSVEGLR-AVEVYTRTSRVDLFCPGIVLELLSF 297 (855)
Q Consensus 228 ~~~aHr~vLaa~S~~F~~mf~~~~~E~~~---------~~I~l~~~~is~~~~~-~ll~y~YTg~l~~~~~~~~~~ll~~ 297 (855)
+|.|||+|.++||++||.++....+|.+. ..|.++ .-|=|.+|. .+++++||++++ .+ +
T Consensus 262 eikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifd-E~I~PkafA~i~lhclYTD~lD-lS---------l 330 (401)
T KOG2838|consen 262 EIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFD-ELIFPKAFAPIFLHCLYTDRLD-LS---------L 330 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeech-hhhcchhhhhhhhhhheecccc-hh---------h
Confidence 68999999999999999999765554421 256663 234455554 579999999998 22 1
Q ss_pred hchhChHHHHHHHHH-HHH-----hhcCChhhHHHHHHHHHHhccHHHHHHHHHHHHhhhh
Q 003035 298 ANRFCCEEMKSACDA-HLA-----SLVGDIEDALILIDYGLEERATLLVASCLQVLLRELP 352 (855)
Q Consensus 298 A~~~~~~~Lk~~C~~-~l~-----~~l~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~ 352 (855)
|.+- -+.+-..-+. -|. ..+. ...+++++++|..+....|...|..+|.++..
T Consensus 331 ~hkc-e~SigSLSeakAitnaGkpn~~q-aaeAleL~~IAlFfEfemLaQa~e~Vir~aca 389 (401)
T KOG2838|consen 331 AHKC-EDSIGSLSEAKAITNAGKPNDLQ-AAEALELIEIALFFEFEMLAQACEDVIRKACA 389 (401)
T ss_pred cccC-CcccccHHHHHHHHcCCCCchhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 1110 0000000000 011 0111 45566677777777667777777777666543
No 213
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.93 E-value=2.3e-05 Score=86.99 Aligned_cols=68 Identities=25% Similarity=0.333 Sum_probs=64.5
Q ss_pred hcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HH---HHHHHHHHHHCCCCchhHHHHHHHHHHHhc
Q 003035 668 NHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EA---FFLKAYILADTNLDPESSTYVIQLLEEALR 739 (855)
Q Consensus 668 ~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a---~~~lg~~~~~~g~~~~A~~~~~~lle~al~ 739 (855)
..+|+++++++++|.+|+.+|++++|+..|+++++++|++ ++ |+++|.+|..+|+.++|+.. +++|++
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~----LrrALe 140 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADC----LRTALR 140 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHH----HHHHHH
Confidence 3589999999999999999999999999999999999998 55 99999999999999999999 999993
No 214
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.92 E-value=8.9e-06 Score=69.49 Aligned_cols=65 Identities=32% Similarity=0.448 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCC---CHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003035 708 EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGL---RKG--QALNNLGSIYVECGKLDQAENCYINALDI 777 (855)
Q Consensus 708 ~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~---~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~ 777 (855)
.+++++|.+|..+|++++|+.. |+++++. .... .|. .+++++|.++..+|++++|+++|++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~----~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDY----YEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHH----HHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHH----HHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3444444555555555555544 4444422 1011 122 68999999999999999999999999975
No 215
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.91 E-value=8.8e-05 Score=77.16 Aligned_cols=100 Identities=12% Similarity=0.049 Sum_probs=89.2
Q ss_pred HHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----c
Q 003035 710 FFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG-----QALNNLGSIYVECGKLDQAENCYINALDIK-----H 779 (855)
Q Consensus 710 ~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~-----~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~-----~ 779 (855)
.|+.|.-+...|+|.+|... |...+ ...|+ .+++.||.++..+|++++|...|..+++-. -
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~----F~~fi-----~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA 214 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQA----FQAFI-----KKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKA 214 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHH----HHHHH-----HcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCC
Confidence 67788888999999999999 99999 55555 899999999999999999999999999876 5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHH
Q 003035 780 TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFE 818 (855)
Q Consensus 780 ~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~ 818 (855)
+.+++.+|.++..+|+.++|...|+++++..|+...+-.
T Consensus 215 pdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 215 PDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 789999999999999999999999999999999877643
No 216
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.88 E-value=0.00012 Score=69.13 Aligned_cols=95 Identities=13% Similarity=0.191 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh----HHHHH
Q 003035 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFFL 712 (855)
Q Consensus 640 ~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~---~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~----~a~~~ 712 (855)
+..++..|.-.++.|+|++|++.|+.+....|.. ..+...+|.+|+..|++++|+..+++-|+++|.+ .+++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 4567888999999999999999999999988754 5778999999999999999999999999999987 89999
Q ss_pred HHHHHHHCCC---------------CchhHHHHHHHHHHHh
Q 003035 713 KAYILADTNL---------------DPESSTYVIQLLEEAL 738 (855)
Q Consensus 713 lg~~~~~~g~---------------~~~A~~~~~~lle~al 738 (855)
.|.+++.+.. ...|... |++.+
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~----f~~lv 126 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRD----FEQLV 126 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHH----HHHHH
Confidence 9999988765 4455555 77777
No 217
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.88 E-value=0.00016 Score=68.48 Aligned_cols=117 Identities=17% Similarity=0.087 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh----HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH-
Q 003035 674 HERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG- 748 (855)
Q Consensus 674 ~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~----~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~- 748 (855)
+..++..|...++.|+|++|++.|+......|.. .+...+|.+|+..+++++|+.. +++.| ++.|.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~----~~rFi-----rLhP~h 80 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAA----YDRFI-----RLHPTH 80 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHH----HHHHH-----HhCCCC
Confidence 4556666666666667777766666666666654 5666666666666666666666 66666 55554
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHH
Q 003035 749 ----QALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASA 816 (855)
Q Consensus 749 ----~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a 816 (855)
-+++..|.++..+.. ..+......+ ...+...+|...|++.|+..|+..-+
T Consensus 81 p~vdYa~Y~~gL~~~~~~~-----~~~~~~~~~d------------rD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 81 PNVDYAYYMRGLSYYEQDE-----GSLQSFFRSD------------RDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred CCccHHHHHHHHHHHHHhh-----hHHhhhcccc------------cCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 555555555554432 1111111111 11122457777777777777776543
No 218
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=97.87 E-value=7.6e-05 Score=76.14 Aligned_cols=97 Identities=21% Similarity=0.253 Sum_probs=83.8
Q ss_pred EEEEEcCeEEEeeehhhhcCCHHHHHhhcCCCc-cC-CCCeeEecCCCCCHHHHHHHHHHhccCCCCC-CCHHHHHHHHH
Q 003035 220 VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFV-ES-KRKTIDFSHDGVSVEGLRAVEVYTRTSRVDL-FCPGIVLELLS 296 (855)
Q Consensus 220 V~f~v~~~~~~aHr~vLaa~S~~F~~mf~~~~~-E~-~~~~I~l~~~~is~~~~~~ll~y~YTg~l~~-~~~~~~~~ll~ 296 (855)
|.+-|||..|..+|.-|.-..-+|++||.+++. +. ..+.|-| |-||.-|..+|+||..|.+.. -+...+.||+.
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI---DRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~ 83 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI---DRSPKHFDTILNFMRDGDVDLPESEKELKELLR 83 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe---cCChhHHHHHHHhhhcccccCccchHHHHHHHH
Confidence 889999999999999999999999999998874 32 3345777 789999999999999887772 45567889999
Q ss_pred HhchhChHHHHHHHHHHHHhhcC
Q 003035 297 FANRFCCEEMKSACDAHLASLVG 319 (855)
Q Consensus 297 ~A~~~~~~~Lk~~C~~~l~~~l~ 319 (855)
=|..|++++|.+.|...+.....
T Consensus 84 EA~fYlL~~Lv~~C~~~i~~~~~ 106 (230)
T KOG2716|consen 84 EAEFYLLDGLVELCQSAIARLIR 106 (230)
T ss_pred HHHHhhHHHHHHHHHHHhhhccc
Confidence 99999999999999998887755
No 219
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.78 E-value=1.9e-05 Score=86.16 Aligned_cols=131 Identities=15% Similarity=0.027 Sum_probs=113.9
Q ss_pred CeEEEeeehhhhcCCHHHHHhhcCCCccCCCCeeEecCCCCCHHHHHHHHHHhccCCCCCCCHHHHH---HHHHHhchhC
Q 003035 226 DKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVL---ELLSFANRFC 302 (855)
Q Consensus 226 ~~~~~aHr~vLaa~S~~F~~mf~~~~~E~~~~~I~l~~~~is~~~~~~ll~y~YTg~l~~~~~~~~~---~ll~~A~~~~ 302 (855)
+..|.+|+.+++++|++|++|+..+..+.....+++ .+.+++.++.+..|.|+..-. ...+.+. .++..+.++.
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~--~d~~~~~~~~~~~F~~~~s~~-~~~~~~~~~~~~~a~~f~~~ 185 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITL--LEEKPEVLEALNGFQVLPSQV-SSVERIFEKHPDLAAAFKYK 185 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccc--cccchhhHhhhceEEEeccch-HHHHHhhcCChhhhhccccc
Confidence 566999999999999999999998888777777888 899999999999999996654 4445554 8889999999
Q ss_pred hHHHHHHHHHHHHhhcCChhhHHHHHHHHHHhccHHHHHHHHHHHHh--hhhhhcCChhH
Q 003035 303 CEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLR--ELPSSLYNPKV 360 (855)
Q Consensus 303 ~~~Lk~~C~~~l~~~l~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~--~~~~v~~~~~f 360 (855)
...|+..|...+.+.+. ..++...+..+..++...+...|..++.. ++..+.+...+
T Consensus 186 ~~~lk~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~~~~~~ 244 (297)
T KOG1987|consen 186 NRHLKLACMPVLLSLIE-TLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLDWLEKKLNE 244 (297)
T ss_pred cHHHHHHHHHHHHHHHH-hhhhcccHHHhchhHHHHHHHHHHHHHhccchHhHHHHHHHH
Confidence 99999999999999999 89999999999999999999999999998 66666554443
No 220
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.75 E-value=0.014 Score=69.20 Aligned_cols=260 Identities=13% Similarity=0.018 Sum_probs=138.3
Q ss_pred cchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003035 497 GREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLA 576 (855)
Q Consensus 497 ~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~~~~l~lra~~y~~~gd~~~A~~~~~~aL~ 576 (855)
+++|...++..-..-|++....-.+-.+|...+++++|...|++++...|+.+.+......|.+.++|.+-.+.--+.-+
T Consensus 59 ~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK 138 (932)
T KOG2053|consen 59 GDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK 138 (932)
T ss_pred chhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555555667788999999999999999999888866555555667777777655443333333
Q ss_pred cCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcC-CCChHH-HHHHHHHHHHcC
Q 003035 577 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIND-PGKSFL-RFRQSLLLLRLN 654 (855)
Q Consensus 577 ~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~-p~~~~~-~~~~a~~l~~~g 654 (855)
.-|+.+.+. -....++.......+.... .++- .-+-..++++++.. +-...+ ....-.++..+|
T Consensus 139 ~~pk~~yyf-----WsV~Slilqs~~~~~~~~~--~i~l-------~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~ 204 (932)
T KOG2053|consen 139 NFPKRAYYF-----WSVISLILQSIFSENELLD--PILL-------ALAEKMVQKLLEKKGKIESEAEIILYLLILELQG 204 (932)
T ss_pred hCCcccchH-----HHHHHHHHHhccCCccccc--chhH-------HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcc
Confidence 445543111 0011111111111111100 0000 00112345556555 322222 222345677899
Q ss_pred CHHHHHHHH-HHHHh-cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHH-HHHHHHHCCC--------
Q 003035 655 CQKAAMRCL-RLARN-HSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFL-KAYILADTNL-------- 722 (855)
Q Consensus 655 ~~~~A~~~l-~~al~-~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~-lg~~~~~~g~-------- 722 (855)
++++|...+ ....+ .-+.+.......+..+...+++++-.+...+++...+++ ..++. .-.++.....
T Consensus 205 k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s 284 (932)
T KOG2053|consen 205 KYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDDYKIYTDSVFKLLELLNKEPAEAAHS 284 (932)
T ss_pred cHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcchHHHHHHHHHHHHhcccccchhhhh
Confidence 999999988 33333 444455555667778888999999999999999999986 33332 1112222211
Q ss_pred CchhHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003035 723 DPESSTYVIQLLEEALRCPSD-GLRKGQALNNLGSIYVECGKLDQAENCYIN 773 (855)
Q Consensus 723 ~~~A~~~~~~lle~al~~~~~-~~~p~~a~~~LG~~y~~~g~~~~A~~~~~k 773 (855)
........++..++.+ .+ ...|--|+..+-.-+...|+.+++...|-+
T Consensus 285 ~~~~l~~~~ek~~~~i---~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~ 333 (932)
T KOG2053|consen 285 LSKSLDECIEKAQKNI---GSKSRGPYLARLELDKRYKLIGDSEEMLSYYFK 333 (932)
T ss_pred hhhhHHHHHHHHHHhh---cccccCcHHHHHHHHHHhcccCChHHHHHHHHH
Confidence 1112222222244444 22 233434444444444566788877655543
No 221
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.72 E-value=0.093 Score=60.71 Aligned_cols=123 Identities=16% Similarity=0.062 Sum_probs=75.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh--HHHHHHHHHHHHC
Q 003035 643 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF--EAFFLKAYILADT 720 (855)
Q Consensus 643 ~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~--~a~~~lg~~~~~~ 720 (855)
|-..+.-|...|+++-|.+.|.++=- ..---..|-..|++++|.+..++... |.. ..|...+.-+...
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~~~--------~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldeh 837 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEADL--------FKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEH 837 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhcch--------hHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhh
Confidence 33455666777888888777765411 11122455567778777766655433 343 6667777777788
Q ss_pred CCCchhHHH---------HHHHHHHHh------cCCCCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003035 721 NLDPESSTY---------VIQLLEEAL------RCPSDGLRKG---QALNNLGSIYVECGKLDQAENCYINALD 776 (855)
Q Consensus 721 g~~~~A~~~---------~~~lle~al------~~~~~~~~p~---~a~~~LG~~y~~~g~~~~A~~~~~kAL~ 776 (855)
|+|.+|.+. +|+.|.+.- +.. ....|+ +.+..+|.-|...|++..|...|-+|-+
T Consensus 838 gkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv-~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 838 GKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLV-EKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred cchhhhhheeEEccCchHHHHHHHhhCcchHHHHHH-HHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence 887776653 333354432 000 012233 6777888888899999999888877644
No 222
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.70 E-value=8.1e-05 Score=72.53 Aligned_cols=67 Identities=16% Similarity=0.175 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCC
Q 003035 656 QKAAMRCLRLARNHSSSEHERLVYEGWILYDTG----------HREEALSRAEKSISIERTF-EAFFLKAYILADTNL 722 (855)
Q Consensus 656 ~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g----------~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~ 722 (855)
++.|.+.++.....+|.+++.+++=|.++..+. -+++|+..|++||.++|+. .+++.+|.+|...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 677888999999999999999988888777653 3677999999999999999 999999999877654
No 223
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.17 Score=56.43 Aligned_cols=426 Identities=13% Similarity=0.047 Sum_probs=240.9
Q ss_pred HHHHHHhhccccc-chhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhh-hhcHHHHHHHHHHHHHhc----c-----hh
Q 003035 384 YYFLSQVAMEKDR-VSNTTVMLLERLGECSTERWQRMLALHQLGCVMFE-REEYKDACYYFEAAADAG----H-----IY 452 (855)
Q Consensus 384 ~~~La~~~~~~~~-~~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~-~g~~~eA~~~~~~Al~~~----~-----~~ 452 (855)
...+|+-....++ .-.++++.++......|...-++....+||.+.+. .++++.|..++++|..+. . ..
T Consensus 10 LlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~ 89 (629)
T KOG2300|consen 10 LLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQ 89 (629)
T ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhH
Confidence 4455665555552 25688999988888877777777788899988755 889999999999997642 1 13
Q ss_pred hhhhHHHHHHHhC-ChHHHHHHHHhHHHcCCCch-HH----HHHHhhc---cCcchHHHHHHHHHHh-CCCCchhHHH--
Q 003035 453 SLAGLARAKYKVG-QQYSAYKLINSIISEHKPTG-WM----YQERSLY---NLGREKIVDLNYASEL-DPTLSFPYKY-- 520 (855)
Q Consensus 453 a~~~la~~~~~~g-~~~~A~~~l~~~i~~~p~~~-~~----y~~~~~~---~~~~~A~~~l~~a~~l-dP~~~~a~~~-- 520 (855)
+...|+.+|.... ....|...++++|+...+.+ |- ++..... .+...|++.+.--.+- ||- -.+|..
T Consensus 90 a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~-~~~ylr~~ 168 (629)
T KOG2300|consen 90 AASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHI-CFPYLRML 168 (629)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchh-hhHHHHHH
Confidence 5677888888877 77888889999998876654 21 1111110 1112233221111110 111 111211
Q ss_pred ----HHHHHHHhCC---HHHHHHHHHHHHc-cCCCH---hHH-----HHHHHHHHHcCCHHHHHHHHHHHH----hcCCc
Q 003035 521 ----RAVAKMEEGQ---IRAAISEIDRIIV-FKLSV---DCL-----ELRAWLFIAADDYESALRDTLALL----ALESN 580 (855)
Q Consensus 521 ----~a~~~~~~~~---~~~A~~~~~k~l~-~~p~~---~~l-----~lra~~y~~~gd~~~A~~~~~~aL----~~~P~ 580 (855)
++.+++.+.+ ...+.....+++. ..+++ +.+ .+.-..|...|+...+...++++- ++.+.
T Consensus 169 ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~ 248 (629)
T KOG2300|consen 169 FTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTS 248 (629)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCC
Confidence 2223333333 3344555555554 22332 222 123445667777766655555332 22222
Q ss_pred hhh----hhcc--------cchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCC-C--hH----
Q 003035 581 YMM----FHGR--------VSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG-K--SF---- 641 (855)
Q Consensus 581 ~~~----~~~~--------~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~-~--~~---- 641 (855)
+.. ..+. +--.++..++.-....-... ..+|+......| +.+.+ .+.-|. + ..
T Consensus 249 ~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~---~gy~~~~~K~tD----e~i~q-~eklkq~d~~srilsm 320 (629)
T KOG2300|consen 249 SRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMP---AGYFKKAQKYTD----EAIKQ-TEKLKQADLMSRILSM 320 (629)
T ss_pred CCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhh---hHHHHHHHHHHH----HHHHH-HhhcccccchhHHHHH
Confidence 110 0000 00001111111000000000 011111111100 11111 111111 1 11
Q ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC-------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh
Q 003035 642 ----LRFRQSLLLLRLNCQKAAMRCLRLARNH---SSS-------EHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (855)
Q Consensus 642 ----~~~~~a~~l~~~g~~~~A~~~l~~al~~---~p~-------~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~ 707 (855)
..-....+-+-.|++.+|++....+.+. .|. .+..++.+|......|.++.|...|..+.++-...
T Consensus 321 ~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~ 400 (629)
T KOG2300|consen 321 FKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI 400 (629)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH
Confidence 1122344456689999999988877664 454 45567889999999999999999999999986554
Q ss_pred ----HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhccc
Q 003035 708 ----EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG----QALNNLGSIYVECGKLDQAENCYINALDIKH 779 (855)
Q Consensus 708 ----~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~----~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~~ 779 (855)
..-.++|.+|.+.|+.+.-.+. ++..-...+...... .+++..|...+.++++.||.....+.+++.+
T Consensus 401 dl~a~~nlnlAi~YL~~~~~ed~y~~----ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkman 476 (629)
T KOG2300|consen 401 DLQAFCNLNLAISYLRIGDAEDLYKA----LDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMAN 476 (629)
T ss_pred HHHHHHHHhHHHHHHHhccHHHHHHH----HHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc
Confidence 3445789999998877765554 443320000001111 6777788888999999999999999999872
Q ss_pred --------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc---cCCHHHHHHHhh
Q 003035 780 --------TRAHQGLARVYYLKNELKAAYDEMTKLLEKA---QYSASAFEKRSE 822 (855)
Q Consensus 780 --------~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~---p~~~~a~~~lg~ 822 (855)
.-.+.-+|.+....||..++.+...-++... ||.+.-+...+.
T Consensus 477 aed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si 530 (629)
T KOG2300|consen 477 AEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSI 530 (629)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHH
Confidence 2345567888899999999999988887764 565554444443
No 224
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=97.59 E-value=0.00037 Score=59.69 Aligned_cols=81 Identities=31% Similarity=0.354 Sum_probs=66.0
Q ss_pred EEEEE-cCeEEEeeehhhhcCCHHHHHhhcCCCccC--CCCeeEecCCCCCHHHHHHHHHHh-----ccCC---CCC--C
Q 003035 220 VTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFVES--KRKTIDFSHDGVSVEGLRAVEVYT-----RTSR---VDL--F 286 (855)
Q Consensus 220 V~f~v-~~~~~~aHr~vLaa~S~~F~~mf~~~~~E~--~~~~I~l~~~~is~~~~~~ll~y~-----YTg~---l~~--~ 286 (855)
|+++- +|++|-..|- +|.-|.-.|+||+|++.++ ..++|.+ .++...+++.+.+|+ ||+. ++. |
T Consensus 19 VkLvS~Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f--~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~I 95 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYF--RDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDI 95 (112)
T ss_pred eEeecCCCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEe--ccchHHHHHHHHHHhhheeeeccccccCCCCCC
Confidence 88887 5677766554 5788999999999876554 5569999 999999999999998 7776 222 8
Q ss_pred CHHHHHHHHHHhchhCh
Q 003035 287 CPGIVLELLSFANRFCC 303 (855)
Q Consensus 287 ~~~~~~~ll~~A~~~~~ 303 (855)
+++.++|||.+||.+.+
T Consensus 96 ppemaleLL~aAn~Lec 112 (112)
T KOG3473|consen 96 PPEMALELLMAANYLEC 112 (112)
T ss_pred CHHHHHHHHHHhhhhcC
Confidence 99999999999998754
No 225
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.58 E-value=8.2e-05 Score=66.18 Aligned_cols=88 Identities=17% Similarity=0.144 Sum_probs=68.6
Q ss_pred EEEEEcCeEEEeeehhhh-cCCHHHHHhhcCC---CccCCCCeeEecCCCCCHHHHHHHHHHhcc-CCCCCCCHHHHHHH
Q 003035 220 VTFCVRDKEISFVRNKIA-SLSSPFKAMLYGG---FVESKRKTIDFSHDGVSVEGLRAVEVYTRT-SRVDLFCPGIVLEL 294 (855)
Q Consensus 220 V~f~v~~~~~~aHr~vLa-a~S~~F~~mf~~~---~~E~~~~~I~l~~~~is~~~~~~ll~y~YT-g~l~~~~~~~~~~l 294 (855)
|+|.|||+.|.+-+..|. ....+|..|+.+. .....+.++-| |-+|..|+.||+|+.+ +.+...+...+..+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi---DRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI---DRDPELFEYILNYLRTGGKLPIPDEICLEEL 77 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE---SS-HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe---ccChhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence 789999999999999998 4456899999865 44555667877 6799999999999999 66662235677889
Q ss_pred HHHhchhChHHH-HHHH
Q 003035 295 LSFANRFCCEEM-KSAC 310 (855)
Q Consensus 295 l~~A~~~~~~~L-k~~C 310 (855)
+.-|+.|+++.+ .+.|
T Consensus 78 ~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 78 LEEAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHHHT-HHHHBHHC
T ss_pred HHHHHHcCCCccccCCC
Confidence 999999999998 6666
No 226
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.25 Score=55.26 Aligned_cols=374 Identities=16% Similarity=0.048 Sum_probs=205.4
Q ss_pred HHHHhhhhHhhhh--cHHHHHHHHHHHHHhcch-----hhhhhHHHH-HHHhCChHHHHHHHHhHHHcCCCchHHHHHHh
Q 003035 421 ALHQLGCVMFERE--EYKDACYYFEAAADAGHI-----YSLAGLARA-KYKVGQQYSAYKLINSIISEHKPTGWMYQERS 492 (855)
Q Consensus 421 a~~~LG~~~l~~g--~~~eA~~~~~~Al~~~~~-----~a~~~la~~-~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~ 492 (855)
++.-++..+-.+| +...+++|.+....-.+. ..+..+|.+ +....+.+.|...++++......-+..|...
T Consensus 9 aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvK- 87 (629)
T KOG2300|consen 9 ALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVK- 87 (629)
T ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhh-
Confidence 4445666667777 899999999887654332 234555543 4556677777777776644333332222100
Q ss_pred hccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHHhC-CHHHHHHHHHHHHccCCCH-----hHHHHHHHHHHHcCCHHH
Q 003035 493 LYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEG-QIRAAISEIDRIIVFKLSV-----DCLELRAWLFIAADDYES 566 (855)
Q Consensus 493 ~~~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~-~~~~A~~~~~k~l~~~p~~-----~~l~lra~~y~~~gd~~~ 566 (855)
..++..++.+|.+.. .+..|...+.++|...-+. ..+..+|.++.-.+|+..
T Consensus 88 ----------------------f~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~s 145 (629)
T KOG2300|consen 88 ----------------------FQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPS 145 (629)
T ss_pred ----------------------hHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchh
Confidence 124455666776655 7778888888888754332 234456778888888888
Q ss_pred HHHHHHHHHhcCCchhhhhcccchhHHH-----HHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCCh-
Q 003035 567 ALRDTLALLALESNYMMFHGRVSGDHLV-----KLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKS- 640 (855)
Q Consensus 567 A~~~~~~aL~~~P~~~~~~~~~~~~~l~-----~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~- 640 (855)
|++. |+..-.+..- ....++. ..+.-...+|+..+ -...+....++.+....|.
T Consensus 146 A~el----Lavga~sAd~---~~~~ylr~~ftls~~~ll~me~d~~d-------------V~~ll~~~~qi~~n~~sdk~ 205 (629)
T KOG2300|consen 146 ALEL----LAVGAESADH---ICFPYLRMLFTLSMLMLLIMERDDYD-------------VEKLLQRCGQIWQNISSDKT 205 (629)
T ss_pred HHHH----Hhccccccch---hhhHHHHHHHHHHHHHHHHhCccHHH-------------HHHHHHHHHHHHhccCCChH
Confidence 8876 3332222100 0000000 00000111111110 0001122223333222221
Q ss_pred --H----HHHHHH-HHHHHcCCHHHHHHHHHHHHh----cCCC------------cHH-----------HHHHHHHHH--
Q 003035 641 --F----LRFRQS-LLLLRLNCQKAAMRCLRLARN----HSSS------------EHE-----------RLVYEGWIL-- 684 (855)
Q Consensus 641 --~----~~~~~a-~~l~~~g~~~~A~~~l~~al~----~~p~------------~~~-----------~~~~lg~~~-- 684 (855)
. .|..+. -.|...|+...+...+++.-+ +.|. .+. +++++-.+-
T Consensus 206 ~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hs 285 (629)
T KOG2300|consen 206 QKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHS 285 (629)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhh
Confidence 0 111111 224556777776666664322 1221 111 112221111
Q ss_pred HHCCCHHHHHHHHHHHHhccCC------h---------HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH-
Q 003035 685 YDTGHREEALSRAEKSISIERT------F---------EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG- 748 (855)
Q Consensus 685 ~~~g~~~eAl~~~~kal~~~p~------~---------~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~- 748 (855)
...|-+++|.++-+++|..-.. . ..+-.+..+-.-.|++.+|++.+....+-.-+.|..-+-..
T Consensus 286 m~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~ 365 (629)
T KOG2300|consen 286 MPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAH 365 (629)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHh
Confidence 1346678888888877764211 1 22334566677789999999983333332222222112112
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc---c--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCC--------
Q 003035 749 --QALNNLGSIYVECGKLDQAENCYINALDIK---H--TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS-------- 813 (855)
Q Consensus 749 --~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~---~--~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~-------- 813 (855)
+++..+|.....-+-++.|...|..|++.- + ..+-.++|.+|.+.|+-+.-.+..+ .+.|.|
T Consensus 366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt~s~ssq~ 442 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALD---LIGPLNTNSLSSQR 442 (629)
T ss_pred HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHH---hcCCCCCCcchHHH
Confidence 788889998889999999999999999876 3 3455689999999886544433333 345553
Q ss_pred --HHHHHHHhh----cCCHHHHHHHHHHHHhcC
Q 003035 814 --ASAFEKRSE----YSDREMAKNDLNMATQLD 840 (855)
Q Consensus 814 --~~a~~~lg~----~g~~eeA~~~~~kAl~l~ 840 (855)
+.+++-.|. .+++.||+..+.+.+++.
T Consensus 443 l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 443 LEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 345666666 899999999999999874
No 227
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.53 E-value=0.04 Score=65.35 Aligned_cols=116 Identities=16% Similarity=0.091 Sum_probs=65.9
Q ss_pred cHHHHHHHHHHHHHhcchhhhhhHHHHHHHh-----CChHHHHHHHHhHHHcCCCchHHHHHHhhccCcchHHHHHHHHH
Q 003035 434 EYKDACYYFEAAADAGHIYSLAGLARAKYKV-----GQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYAS 508 (855)
Q Consensus 434 ~~~eA~~~~~~Al~~~~~~a~~~la~~~~~~-----g~~~~A~~~l~~~i~~~p~~~~~y~~~~~~~~~~~A~~~l~~a~ 508 (855)
+-.+|.++|+.+.+.++..+...++.+|+.- .+.+.|+..+..+.+. +.++.
T Consensus 227 ~~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~-----------------------~~~~a 283 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAES-----------------------FKKAA 283 (552)
T ss_pred hhhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHH-----------------------HHHHH
Confidence 4567888888888888887777777776532 2344444444333321 11111
Q ss_pred HhCCCCchhHHHHHHHHHHhC-----CHHHHHHHHHHHHccCCCHhHHHHHHHHHHHcC---CHHHHHHHHHHHH
Q 003035 509 ELDPTLSFPYKYRAVAKMEEG-----QIRAAISEIDRIIVFKLSVDCLELRAWLFIAAD---DYESALRDTLALL 575 (855)
Q Consensus 509 ~ldP~~~~a~~~~a~~~~~~~-----~~~~A~~~~~k~l~~~p~~~~l~lra~~y~~~g---d~~~A~~~~~~aL 575 (855)
..- ++.+.+.+|.+|.+.. +++.|+..|.++-... .+++.++.|.+|..-. |+..|..+|..+-
T Consensus 284 ~~~--~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa 355 (552)
T KOG1550|consen 284 TKG--LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAA 355 (552)
T ss_pred hhc--CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHH
Confidence 111 4446667777777643 6677888887776543 3444555566655443 4455555555444
No 228
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.51 E-value=0.00024 Score=53.47 Aligned_cols=43 Identities=19% Similarity=0.158 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh
Q 003035 780 TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE 822 (855)
Q Consensus 780 ~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~ 822 (855)
+.+++.+|.+|..+|++++|++.|+++++.+|+|+.++..+|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3578899999999999999999999999999999999998874
No 229
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.50 E-value=0.0004 Score=76.43 Aligned_cols=142 Identities=23% Similarity=0.267 Sum_probs=111.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH-Hhcc------CCh---HHHHHHHHH
Q 003035 647 SLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKS-ISIE------RTF---EAFFLKAYI 716 (855)
Q Consensus 647 a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~ka-l~~~------p~~---~a~~~lg~~ 716 (855)
-..+++..+...+....+.+..+..+.+...+..++.++..|++.+|.+.+-.. +... |.. .+|+++|.+
T Consensus 213 Vr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcI 292 (696)
T KOG2471|consen 213 VRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCI 292 (696)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceE
Confidence 344566677888888888888888888899999999999999999998876442 2222 332 456889999
Q ss_pred HHHCCCCchhHHHHHHHHHHHhc--CC--CCCCCH----------H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--c
Q 003035 717 LADTNLDPESSTYVIQLLEEALR--CP--SDGLRK----------G-QALNNLGSIYVECGKLDQAENCYINALDIK--H 779 (855)
Q Consensus 717 ~~~~g~~~~A~~~~~~lle~al~--~~--~~~~~p----------~-~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~ 779 (855)
++..|.|.-++.. |.+|++ |. ...+.| . ++++|.|..|...|+.-.|.+||.+++... +
T Consensus 293 h~~~~~y~~~~~~----F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n 368 (696)
T KOG2471|consen 293 HYQLGCYQASSVL----FLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN 368 (696)
T ss_pred eeehhhHHHHHHH----HHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC
Confidence 9999999999888 888884 11 011111 1 899999999999999999999999999987 9
Q ss_pred HHHHHHHHHHHHH
Q 003035 780 TRAHQGLARVYYL 792 (855)
Q Consensus 780 ~~a~~~lg~~~~~ 792 (855)
|+.|..++.+...
T Consensus 369 PrlWLRlAEcCim 381 (696)
T KOG2471|consen 369 PRLWLRLAECCIM 381 (696)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999987654
No 230
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.47 E-value=0.0036 Score=69.96 Aligned_cols=184 Identities=13% Similarity=0.007 Sum_probs=87.0
Q ss_pred cccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Q 003035 617 WSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSR 696 (855)
Q Consensus 617 ~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~ 696 (855)
|+.-+....++..+++|+.+|+-+.+|..+|. -...-..+|.++|+++++..... +.........|..-++.
T Consensus 179 WRERnp~aRIkaA~eALei~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~----lg~s~~~~~~g~~~e~~-- 250 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALEINPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEAS----LGKSQFLQHHGHFWEAW-- 250 (539)
T ss_pred HhcCCHHHHHHHHHHHHHhhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHh----hchhhhhhcccchhhhh--
Confidence 43334444556667777777777666665543 11223566666666666532211 00000111111110000
Q ss_pred HHHHHhccCChHHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH----HHHHHHHHHHHHcCCHHHHHHHHH
Q 003035 697 AEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG----QALNNLGSIYVECGKLDQAENCYI 772 (855)
Q Consensus 697 ~~kal~~~p~~~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~----~a~~~LG~~y~~~g~~~~A~~~~~ 772 (855)
.....+|-..+...+|.+..+.|+.++|++. ++..+ +..|. .++.+|-.++...+.|.++...+.
T Consensus 251 --~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~----~rdLl-----ke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 251 --HRRDTNVLVYAKRRLAMCARKLGRLREAIKM----FRDLL-----KEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred --hccccchhhhhHHHHHHHHHHhCChHHHHHH----HHHHH-----hhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 0000001013344556666666666666666 55555 22222 455556666666666666655555
Q ss_pred HHHhcc---cHHHHHHHHHHHH-------------HcC---CHHHHHHHHHHHHHHccCCHHHHHH
Q 003035 773 NALDIK---HTRAHQGLARVYY-------------LKN---ELKAAYDEMTKLLEKAQYSASAFEK 819 (855)
Q Consensus 773 kAL~~~---~~~a~~~lg~~~~-------------~~g---~~~~A~~~~~kal~~~p~~~~a~~~ 819 (855)
+==++. .+.+.++-+.+.. ++| .-..|++...+|++.+|..+.++..
T Consensus 320 kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe 385 (539)
T PF04184_consen 320 KYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLE 385 (539)
T ss_pred HhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhc
Confidence 532222 2333333333221 222 1234778888999988887766543
No 231
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.46 E-value=0.034 Score=61.54 Aligned_cols=150 Identities=18% Similarity=0.162 Sum_probs=103.4
Q ss_pred CChHHHHHHHHHHHH---cCCHHHHHHHHHH-HHhcCCCcHHHHHHHHHHHHH---------CCCHHHHHHHHHHHHhcc
Q 003035 638 GKSFLRFRQSLLLLR---LNCQKAAMRCLRL-ARNHSSSEHERLVYEGWILYD---------TGHREEALSRAEKSISIE 704 (855)
Q Consensus 638 ~~~~~~~~~a~~l~~---~g~~~~A~~~l~~-al~~~p~~~~~~~~lg~~~~~---------~g~~~eAl~~~~kal~~~ 704 (855)
....+.+..|..+.+ .|+.++|+..+.. .....+.+++.+..+|.+|-+ ....++|+..|.++.+++
T Consensus 177 ~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~ 256 (374)
T PF13281_consen 177 NQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE 256 (374)
T ss_pred cchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC
Confidence 455667788888888 9999999999999 556677889999999998864 234789999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccHHHHH
Q 003035 705 RTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQ 784 (855)
Q Consensus 705 p~~~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~~~~a~~ 784 (855)
|+...=.|++..+.-.|...+.... +++.. ..+.....+.|..+.-. +...+-
T Consensus 257 ~~~Y~GIN~AtLL~~~g~~~~~~~e----l~~i~-------------~~l~~llg~kg~~~~~~----------dYWd~A 309 (374)
T PF13281_consen 257 PDYYSGINAATLLMLAGHDFETSEE----LRKIG-------------VKLSSLLGRKGSLEKMQ----------DYWDVA 309 (374)
T ss_pred ccccchHHHHHHHHHcCCcccchHH----HHHHH-------------HHHHHHHHhhccccccc----------cHHHHH
Confidence 8775556777777777776655544 33322 12222223333211111 444555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHccCCH
Q 003035 785 GLARVYYLKNELKAAYDEMTKLLEKAQYSA 814 (855)
Q Consensus 785 ~lg~~~~~~g~~~~A~~~~~kal~~~p~~~ 814 (855)
.++.+....|++++|.++++++++..|...
T Consensus 310 Tl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 310 TLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 666667777888888888888887766543
No 232
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=0.0099 Score=61.10 Aligned_cols=149 Identities=13% Similarity=0.065 Sum_probs=115.1
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHccCC--CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHH
Q 003035 517 PYKYRAVAKMEEGQIRAAISEIDRIIVFKL--SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLV 594 (855)
Q Consensus 517 a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p--~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~ 594 (855)
..+..+.++...|.|.-.+..++++++.+| ++....-+|.+..+-||.+.|..+++.+-+..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~---------------- 242 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVT---------------- 242 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH----------------
Confidence 344567788888999999999999998775 46666677888889999988887776544211
Q ss_pred HHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 003035 595 KLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH 674 (855)
Q Consensus 595 ~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~ 674 (855)
+.+..-..+..++...+.+++..+++..|...|.+.+..+|.++
T Consensus 243 ------------------------------------~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~ 286 (366)
T KOG2796|consen 243 ------------------------------------QKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNA 286 (366)
T ss_pred ------------------------------------hhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCch
Confidence 11111223334455677888999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh----HHHHHHHHHH
Q 003035 675 ERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFFLKAYIL 717 (855)
Q Consensus 675 ~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~----~a~~~lg~~~ 717 (855)
.+.++.|.++.-.|+..+|++..+.+++..|.. ...+++-.+|
T Consensus 287 ~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 287 VANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence 999999999999999999999999999999975 4455554443
No 233
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=0.0093 Score=61.31 Aligned_cols=166 Identities=13% Similarity=0.085 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh--HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCC--CCCCHH-H
Q 003035 675 ERLVYEGWILYDTGHREEALSRAEKSISIERTF--EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPS--DGLRKG-Q 749 (855)
Q Consensus 675 ~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~--~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~--~~~~p~-~ 749 (855)
.+.+.+..++.-.|.|.-.+..+.+.++.+|.. .....+|.+-++-|+...|..+ +++.-+... ++.+.. .
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~y----f~~vek~~~kL~~~q~~~~ 253 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKY----FQDVEKVTQKLDGLQGKIM 253 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHH----HHHHHHHHhhhhccchhHH
Confidence 344667778888899999999999999988665 6667889999999999999998 885542221 122222 6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCH---HHHHHHhh--
Q 003035 750 ALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSA---SAFEKRSE-- 822 (855)
Q Consensus 750 a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~---~a~~~lg~-- 822 (855)
...+.+.+|...+++.+|...|.+.+..+ ++.+-++.|.++.-.|+..+|++.++.+++..|... ....+|-.
T Consensus 254 V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 254 VLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred HHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence 77788889999999999999999999888 888888999999999999999999999999888632 23333333
Q ss_pred ---cCCHHHHHHHHHHHH-hcCCCCc
Q 003035 823 ---YSDREMAKNDLNMAT-QLDPLRT 844 (855)
Q Consensus 823 ---~g~~eeA~~~~~kAl-~l~P~~~ 844 (855)
+-+-.+-+..+..++ ...||+-
T Consensus 334 EL~Ys~~~~~k~~l~~~ia~~~~d~f 359 (366)
T KOG2796|consen 334 ELEYSRSMQKKQALLEAVAGKEGDSF 359 (366)
T ss_pred HHHhhhhhhHHHHHHHHHhccCCCcc
Confidence 334444444444444 3355553
No 234
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.00077 Score=68.28 Aligned_cols=95 Identities=20% Similarity=0.245 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003035 749 QALNNLGSIYVECGKLDQAENCYINALDIK--------------------HTRAHQGLARVYYLKNELKAAYDEMTKLLE 808 (855)
Q Consensus 749 ~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--------------------~~~a~~~lg~~~~~~g~~~~A~~~~~kal~ 808 (855)
.++..-|+-++..|+|.+|...|+.|+..- ....+.|++.++...|++-++++....++.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 677888999999999999999999998531 345688999999999999999999999999
Q ss_pred HccCCHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCC
Q 003035 809 KAQYSASAFEKRSE----YSDREMAKNDLNMATQLDPLR 843 (855)
Q Consensus 809 ~~p~~~~a~~~lg~----~g~~eeA~~~~~kAl~l~P~~ 843 (855)
..|.|..+|+.+|. .=+.++|..+|.++++++|.-
T Consensus 259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 99999999999999 568899999999999999964
No 235
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.41 E-value=0.00014 Score=51.35 Aligned_cols=32 Identities=19% Similarity=0.189 Sum_probs=27.7
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHH
Q 003035 663 LRLARNHSSSEHERLVYEGWILYDTGHREEAL 694 (855)
Q Consensus 663 l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl 694 (855)
|+++++++|+++++|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67888888888888888888888888888886
No 236
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.0052 Score=62.51 Aligned_cols=192 Identities=13% Similarity=0.075 Sum_probs=136.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcc-----CCh-
Q 003035 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH------ERLVYEGWILYDTGHREEALSRAEKSISIE-----RTF- 707 (855)
Q Consensus 640 ~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~------~~~~~lg~~~~~~g~~~eAl~~~~kal~~~-----p~~- 707 (855)
...|.+.+..+...+++++|..++.+|.+-..++. -++-..|.+...+..+.|+...|++|..+. |+.
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence 44667777888889999999999999986544432 334567788888999999999999998874 443
Q ss_pred HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc------
Q 003035 708 EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG---QALNNLGSIYVECGKLDQAENCYINALDIK------ 778 (855)
Q Consensus 708 ~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~---~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~------ 778 (855)
..-...+--.....+.++|++. |++++......-+-. +.+...+.++....++++|-..+.|-..+.
T Consensus 111 AmaleKAak~lenv~Pd~Alql----Yqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y 186 (308)
T KOG1585|consen 111 AMALEKAAKALENVKPDDALQL----YQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAY 186 (308)
T ss_pred HHHHHHHHHHhhcCCHHHHHHH----HHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhc
Confidence 2333444445566678888888 999884332211111 777788899999999999988888765544
Q ss_pred --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----ccCCHHHHHHHhh---cCCHHHHHHHHHH
Q 003035 779 --HTRAHQGLARVYYLKNELKAAYDEMTKLLEK----AQYSASAFEKRSE---YSDREMAKNDLNM 835 (855)
Q Consensus 779 --~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~----~p~~~~a~~~lg~---~g~~eeA~~~~~k 835 (855)
....+...-.+|.-..||..|...++..-++ .|++..++.+|-. .|+.++..+.+.-
T Consensus 187 ~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 187 NSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEGDIEEIKKVLSS 252 (308)
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccCCHHHHHHHHcC
Confidence 1234555556666677999999999887765 3555666666655 8999888877653
No 237
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.38 E-value=0.0012 Score=64.56 Aligned_cols=103 Identities=19% Similarity=0.120 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCch---hH---HHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHH
Q 003035 690 REEALSRAEKSISIERTF-EAFFLKAYILADTNLDPE---SS---TYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVE 760 (855)
Q Consensus 690 ~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~---A~---~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~ 760 (855)
++.|.+.++.....+|.+ +++++-|.++..+.++.. +. +.++.-|++|| .++|+ +++.++|.+|..
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL-----~I~P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEAL-----KINPNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH-----HH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHH-----hcCCchHHHHHHHHHHHHH
Confidence 688999999999999999 999999999887765533 21 12223356666 56665 666666666655
Q ss_pred cCC----HHHHHHHHHHHHhcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh
Q 003035 761 CGK----LDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE 822 (855)
Q Consensus 761 ~g~----~~~A~~~~~kAL~~~~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~ 822 (855)
++. ..+|..+ +++|..+|++|+..+|+|..+...|..
T Consensus 82 ~A~l~~d~~~A~~~-------------------------F~kA~~~FqkAv~~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 82 LAFLTPDTAEAEEY-------------------------FEKATEYFQKAVDEDPNNELYRKSLEM 122 (186)
T ss_dssp HHHH---HHHHHHH-------------------------HHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred HHhhcCChHHHHHH-------------------------HHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 432 1222222 466777778888888887665544443
No 238
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0031 Score=64.02 Aligned_cols=98 Identities=20% Similarity=0.229 Sum_probs=68.8
Q ss_pred HHHHhhhhHhhhhcHHHHHHHHHHHHHh--------cc------------hhhhhhHHHHHHHhCChHHHHHHHHhHHHc
Q 003035 421 ALHQLGCVMFEREEYKDACYYFEAAADA--------GH------------IYSLAGLARAKYKVGQQYSAYKLINSIISE 480 (855)
Q Consensus 421 a~~~LG~~~l~~g~~~eA~~~~~~Al~~--------~~------------~~a~~~la~~~~~~g~~~~A~~~l~~~i~~ 480 (855)
+++.-|+-+++.|+|++|...|+.|+.. +| ...+.+.+.+++..|++.++++....++
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL-- 257 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL-- 257 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH--
Confidence 5678899999999999999999999732 11 1223445556666666655555555544
Q ss_pred CCCchHHHHHHhhccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCCCH
Q 003035 481 HKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV 548 (855)
Q Consensus 481 ~p~~~~~y~~~~~~~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~~ 548 (855)
..+|++..+|+.||.+....-+.++|.++|.++|..+|+.
T Consensus 258 ----------------------------~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 258 ----------------------------RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred ----------------------------hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 4555566666777777777778888888888888877764
No 239
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.32 E-value=0.15 Score=56.86 Aligned_cols=134 Identities=9% Similarity=-0.021 Sum_probs=90.6
Q ss_pred hHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHhh--c--cCcchHHHHHHHH-HHhCCCCc--------hhHHHHH
Q 003035 456 GLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSL--Y--NLGREKIVDLNYA-SELDPTLS--------FPYKYRA 522 (855)
Q Consensus 456 ~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~--~--~~~~~A~~~l~~a-~~ldP~~~--------~a~~~~a 522 (855)
...+.|+...+...+..+.+.++....+...+....+. | ++..+|.+.+... ++-.|..+ ..+.++|
T Consensus 211 ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlG 290 (696)
T KOG2471|consen 211 YKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLG 290 (696)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcc
Confidence 44577777778878877777777666655433322222 2 4456676665443 33344422 2356788
Q ss_pred HHHHHhCCHHHHHHHHHHHHc---------cCCC----------HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhh
Q 003035 523 VAKMEEGQIRAAISEIDRIIV---------FKLS----------VDCLELRAWLFIAADDYESALRDTLALLALESNYMM 583 (855)
Q Consensus 523 ~~~~~~~~~~~A~~~~~k~l~---------~~p~----------~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~ 583 (855)
-+.++.+.|..+...|.+++. ++|. .+.+++-|..|...|+.-.|.+.+.++....-.++.
T Consensus 291 cIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPr 370 (696)
T KOG2471|consen 291 CIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPR 370 (696)
T ss_pred eEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcH
Confidence 899999999999999999984 2332 356778899999999999999999998876555554
Q ss_pred hhcccc
Q 003035 584 FHGRVS 589 (855)
Q Consensus 584 ~~~~~~ 589 (855)
.+.+++
T Consensus 371 lWLRlA 376 (696)
T KOG2471|consen 371 LWLRLA 376 (696)
T ss_pred HHHHHH
Confidence 444443
No 240
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.31 E-value=0.005 Score=60.89 Aligned_cols=114 Identities=18% Similarity=0.066 Sum_probs=73.3
Q ss_pred HHHHHHHhccCCh----HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 003035 695 SRAEKSISIERTF----EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENC 770 (855)
Q Consensus 695 ~~~~kal~~~p~~----~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~~a~~~LG~~y~~~g~~~~A~~~ 770 (855)
...++-+.-+|.. .+-..+|..+.+.+++++|... ++.++..+.|+.-..-+-..|+.+..++|++|+|+..
T Consensus 73 ~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aq----L~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~ 148 (207)
T COG2976 73 AAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQ----LKQALAQTKDENLKALAALRLARVQLQQKKADAALKT 148 (207)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHH----HHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3334444444333 3345567777777777777777 7777733333222224555677777778888887777
Q ss_pred HHHHHhcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccC
Q 003035 771 YINALDIK-HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQY 812 (855)
Q Consensus 771 ~~kAL~~~-~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~ 812 (855)
+.....-. ........|.++..+|+.++|+..|+++++..++
T Consensus 149 L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 149 LDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 76655554 4555667788888888888888888888877644
No 241
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=0.012 Score=62.40 Aligned_cols=201 Identities=17% Similarity=0.104 Sum_probs=136.6
Q ss_pred HHHHHHHcCCCChHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q 003035 628 VINQMLINDPGKSFLR-FRQSLLLLRLNCQKAAMRCLRLARNHS---SSEHERLVYEGWILYDTGHREEALSRAEKSISI 703 (855)
Q Consensus 628 ~~~~~l~~~p~~~~~~-~~~a~~l~~~g~~~~A~~~l~~al~~~---p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~ 703 (855)
.+.++...||.-..++ |..|++....+..-+=.+.++++.--. .+..+-...-+.++.-.|++.+|-...+|.++-
T Consensus 53 ~a~kL~ssDP~~Vmart~a~gl~~iaa~s~v~~ak~~dqav~dav~y~~arEk~h~~aai~~~~g~~h~a~~~wdklL~d 132 (491)
T KOG2610|consen 53 SAEKLSSSDPEAVMARTFALGLVLIAAASNVEFAKKMDQAVIDAVKYGNAREKRHAKAAILWGRGKHHEAAIEWDKLLDD 132 (491)
T ss_pred HHHHHhcCChHHHHHHHHHHhhhhhhccchhhHHHHHHHHHHHHHHHhhhHHhhhhhHHHhhccccccHHHHHHHHHHHh
Confidence 3556666677554443 344444444333222222222222110 011123333456677889999999999999999
Q ss_pred cCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCC-CHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003035 704 ERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGL-RKG-----QALNNLGSIYVECGKLDQAENCYINALD 776 (855)
Q Consensus 704 ~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~-~p~-----~a~~~LG~~y~~~g~~~~A~~~~~kAL~ 776 (855)
.|.+ -++..--.++...|+....... +++.+ .. +++ -...+++..+.++|-|++|.+.-+++++
T Consensus 133 ~PtDlla~kfsh~a~fy~G~~~~~k~a----i~kIi-----p~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralq 203 (491)
T KOG2610|consen 133 YPTDLLAVKFSHDAHFYNGNQIGKKNA----IEKII-----PKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQ 203 (491)
T ss_pred CchhhhhhhhhhhHHHhccchhhhhhH----HHHhc-----cccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhcc
Confidence 9999 7777777888889998888888 88888 43 333 4555678888999999999999999999
Q ss_pred cc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCC----HHHHHHHhh----cCCHHHHHHHHHHHH
Q 003035 777 IK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS----ASAFEKRSE----YSDREMAKNDLNMAT 837 (855)
Q Consensus 777 ~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~----~~a~~~lg~----~g~~eeA~~~~~kAl 837 (855)
++ +.-+....+.++...|+.+++.+.|.+.-..-.+. ..-|.+-+. .+.++.|++.|++-+
T Consensus 204 iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 204 INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 99 88899999999999999999999987653322111 011222222 689999999997654
No 242
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=0.011 Score=62.54 Aligned_cols=207 Identities=11% Similarity=0.050 Sum_probs=137.2
Q ss_pred HHHHHHhCCCCchhHHH-HHHHHHHhCCHHHHHHHHHHHHc----cCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 003035 504 LNYASELDPTLSFPYKY-RAVAKMEEGQIRAAISEIDRIIV----FKLSVDCLELRAWLFIAADDYESALRDTLALLALE 578 (855)
Q Consensus 504 l~~a~~ldP~~~~a~~~-~a~~~~~~~~~~~A~~~~~k~l~----~~p~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~ 578 (855)
.++....||+...+..+ +|.+....+.--+=.+.++++.. +....+..+..+.+....|+..+|-....++|...
T Consensus 54 a~kL~ssDP~~Vmart~a~gl~~iaa~s~v~~ak~~dqav~dav~y~~arEk~h~~aai~~~~g~~h~a~~~wdklL~d~ 133 (491)
T KOG2610|consen 54 AEKLSSSDPEAVMARTFALGLVLIAAASNVEFAKKMDQAVIDAVKYGNAREKRHAKAAILWGRGKHHEAAIEWDKLLDDY 133 (491)
T ss_pred HHHHhcCChHHHHHHHHHHhhhhhhccchhhHHHHHHHHHHHHHHHhhhHHhhhhhHHHhhccccccHHHHHHHHHHHhC
Confidence 45556667766666544 34444444333333333444331 22222445556778888999999999999999999
Q ss_pred CchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHc-CCCC---hHHHHHHHHHHHHcC
Q 003035 579 SNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIN-DPGK---SFLRFRQSLLLLRLN 654 (855)
Q Consensus 579 P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~-~p~~---~~~~~~~a~~l~~~g 654 (855)
|.+............. ....++....+.+++.. +|+- +.++-..+..+.+.|
T Consensus 134 PtDlla~kfsh~a~fy------------------------~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 134 PTDLLAVKFSHDAHFY------------------------NGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred chhhhhhhhhhhHHHh------------------------ccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 9875432221111000 01112334455566655 4444 555666677889999
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-----HHHHHHHHHHHHCCCCchhHHH
Q 003035 655 CQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-----EAFFLKAYILADTNLDPESSTY 729 (855)
Q Consensus 655 ~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-----~a~~~lg~~~~~~g~~~~A~~~ 729 (855)
-|++|.+.-+++++++|.+..+....+.++...|++.++.+..++.-..-... .-|-.-|..+...+.|+.|+..
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 99999999999999999999999999999999999999999887765433222 2234567778888999999998
Q ss_pred HHHHHHHHh
Q 003035 730 VIQLLEEAL 738 (855)
Q Consensus 730 ~~~lle~al 738 (855)
|.+-+
T Consensus 270 ----yD~ei 274 (491)
T KOG2610|consen 270 ----YDREI 274 (491)
T ss_pred ----HHHHH
Confidence 87654
No 243
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.0093 Score=60.38 Aligned_cols=193 Identities=14% Similarity=0.043 Sum_probs=123.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-------HHHH
Q 003035 644 FRQSLLLLRLNCQKAAMRCLRLARNHS-----SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-------EAFF 711 (855)
Q Consensus 644 ~~~a~~l~~~g~~~~A~~~l~~al~~~-----p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-------~a~~ 711 (855)
.+.|..+--.+++..|-..|-++-+.. .++.-.-+..+.-.++.++.++|+..+++++++..+. .-++
T Consensus 38 ~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~ 117 (288)
T KOG1586|consen 38 ERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHI 117 (288)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhh
Confidence 333444444555555555555554321 1222223334444566679999999999999997664 3345
Q ss_pred HHHHHHHHC-CCCchhHHHHHHHHHHHhcCCCCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cH-----
Q 003035 712 LKAYILADT-NLDPESSTYVIQLLEEALRCPSDGLRKG---QALNNLGSIYVECGKLDQAENCYINALDIK--HT----- 780 (855)
Q Consensus 712 ~lg~~~~~~-g~~~~A~~~~~~lle~al~~~~~~~~p~---~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~----- 780 (855)
.+|.+|... .++++|+.+ |+++-+-...+.... ..+...+..-...++|.+|++.|++...-. +.
T Consensus 118 ~iaEiyEsdl~d~ekaI~~----YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys 193 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAH----YEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYS 193 (288)
T ss_pred hHHHHHhhhHHHHHHHHHH----HHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhH
Confidence 788888775 889999999 999983322111111 666667777788899999999999987654 22
Q ss_pred -HH-HHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHH-----HHhh------cCCHHHHHHHHHHHHhcC
Q 003035 781 -RA-HQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFE-----KRSE------YSDREMAKNDLNMATQLD 840 (855)
Q Consensus 781 -~a-~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~-----~lg~------~g~~eeA~~~~~kAl~l~ 840 (855)
.- ++.-|.++....|.-.+...+++-.+++|...+... .|.. ...+.+..+.|+....+|
T Consensus 194 ~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~d~e~fte~vkefDsisrLD 266 (288)
T KOG1586|consen 194 AKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQDIEKFTEVVKEFDSISRLD 266 (288)
T ss_pred HHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhccchHH
Confidence 12 345677777778888888888888999998765432 2222 234445555555554443
No 244
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.0013 Score=66.67 Aligned_cols=109 Identities=11% Similarity=0.073 Sum_probs=88.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCch
Q 003035 647 SLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPE 725 (855)
Q Consensus 647 a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~ 725 (855)
|..+....+|..|+.+|.+++.++|..+.-+.+.+.+++..++++.+....++++++.|+. .+++.+|..+.....|++
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 4455666789999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCC-CCCHH-HHHHHHHHHHH
Q 003035 726 SSTYVIQLLEEALRCPSD-GLRKG-QALNNLGSIYV 759 (855)
Q Consensus 726 A~~~~~~lle~al~~~~~-~~~p~-~a~~~LG~~y~ 759 (855)
|+.. +++|...... ...+. +++..|-.+-.
T Consensus 97 aI~~----Lqra~sl~r~~~~~~~~di~~~L~~ak~ 128 (284)
T KOG4642|consen 97 AIKV----LQRAYSLLREQPFTFGDDIPKALRDAKK 128 (284)
T ss_pred HHHH----HHHHHHHHhcCCCCCcchHHHHHHHHHh
Confidence 9999 8888532211 11122 55555554433
No 245
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.21 E-value=0.0086 Score=67.05 Aligned_cols=176 Identities=13% Similarity=0.023 Sum_probs=123.5
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCchhHHHH
Q 003035 651 LRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYV 730 (855)
Q Consensus 651 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~~a~~~lg~~~~~~g~~~~A~~~~ 730 (855)
-+..+.++-++.-++|++++|+-++++..|+.- ...-..+|...|+++++..... +.........|..-+....
T Consensus 179 WRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~---lg~s~~~~~~g~~~e~~~~- 252 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEAS---LGKSQFLQHHGHFWEAWHR- 252 (539)
T ss_pred HhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHh---hchhhhhhcccchhhhhhc-
Confidence 356678888889999999999999999877653 3344688999999998865432 1111111222222121111
Q ss_pred HHHHHHHhcCCCCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003035 731 IQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDIK----HTRAHQGLARVYYLKNELKAAYDEMTK 805 (855)
Q Consensus 731 ~~lle~al~~~~~~~~p~-~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~----~~~a~~~lg~~~~~~g~~~~A~~~~~k 805 (855)
- ..++- .+...+|.+..++|+.++|++.++..++.. +..++.+|-.++...+.+.++...+.+
T Consensus 253 -------R-----dt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 253 -------R-----DTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred -------c-----ccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 0 12222 555679999999999999999999999765 567999999999999999999888877
Q ss_pred HHHH-ccCCHHHHHHHhh-----cCC---------------HHHHHHHHHHHHhcCCCCc
Q 003035 806 LLEK-AQYSASAFEKRSE-----YSD---------------REMAKNDLNMATQLDPLRT 844 (855)
Q Consensus 806 al~~-~p~~~~a~~~lg~-----~g~---------------~eeA~~~~~kAl~l~P~~~ 844 (855)
-=++ -|+.+...++.+. .|+ -..|.+.+.+|.+-||.-+
T Consensus 321 YdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 321 YDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred hccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 5333 2566777776665 222 1347789999999999764
No 246
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.20 E-value=0.026 Score=62.48 Aligned_cols=164 Identities=18% Similarity=0.134 Sum_probs=119.2
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----cCCh-HHHHHHHHHHHH---CCCCchhHHHHHHHHHHHhcCCCCC
Q 003035 673 EHERLVYEGWILYDTGHREEALSRAEKSISI----ERTF-EAFFLKAYILAD---TNLDPESSTYVIQLLEEALRCPSDG 744 (855)
Q Consensus 673 ~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~----~p~~-~a~~~lg~~~~~---~g~~~~A~~~~~~lle~al~~~~~~ 744 (855)
.+++..++-..|.+..+|+.-++..+..-.+ -++. ...+.+|.++.+ .|+.++|+.. +..++.. .
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~i----l~~~l~~---~ 212 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQI----LLPVLES---D 212 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHH----HHHHHhc---c
Confidence 4566678888899999999999999887776 3344 778899999999 9999999999 7775511 1
Q ss_pred CCHH-HHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH-H----
Q 003035 745 LRKG-QALNNLGSIYVEC---------GKLDQAENCYINALDIK-HTRAHQGLARVYYLKNELKAAYDEMTKLL-E---- 808 (855)
Q Consensus 745 ~~p~-~a~~~LG~~y~~~---------g~~~~A~~~~~kAL~~~-~~~a~~~lg~~~~~~g~~~~A~~~~~kal-~---- 808 (855)
-.++ +.+..+|.+|-+. ..+++|+..|.++-+++ +...--|++.++...|.-.+.....++.. +
T Consensus 213 ~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~l 292 (374)
T PF13281_consen 213 ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSL 292 (374)
T ss_pred CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 1112 7888888888642 35899999999999999 77777788888888885444443333332 1
Q ss_pred ---H----ccCCHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCC
Q 003035 809 ---K----AQYSASAFEKRSE----YSDREMAKNDLNMATQLDPLR 843 (855)
Q Consensus 809 ---~----~p~~~~a~~~lg~----~g~~eeA~~~~~kAl~l~P~~ 843 (855)
+ .-++-+.+-++.+ .|++++|...+++++.++|..
T Consensus 293 lg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 293 LGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred HHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 1 1122333334444 899999999999999998754
No 247
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.20 E-value=0.00035 Score=49.36 Aligned_cols=32 Identities=28% Similarity=0.341 Sum_probs=30.4
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhCCHHHHH
Q 003035 504 LNYASELDPTLSFPYKYRAVAKMEEGQIRAAI 535 (855)
Q Consensus 504 l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~ 535 (855)
|++|++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68999999999999999999999999999986
No 248
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.16 E-value=0.00083 Score=47.22 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh
Q 003035 674 HERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (855)
Q Consensus 674 ~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~ 707 (855)
+.+|+.+|.++..+|++++|+..|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3577888888888888888888888888888864
No 249
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.16 E-value=0.0009 Score=50.28 Aligned_cols=40 Identities=20% Similarity=0.056 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 003035 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEG 681 (855)
Q Consensus 642 ~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg 681 (855)
+++.+|..+.++|++++|++.|+++++.+|++++++..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 3444555555555555555555555555555555555444
No 250
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.12 E-value=0.13 Score=61.21 Aligned_cols=199 Identities=14% Similarity=0.019 Sum_probs=131.4
Q ss_pred ChHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhccCChHHHH
Q 003035 639 KSFLRFRQSLLLLRLN---CQKAAMRCLRLARNHSSSEHERLVYEGWILYD----TGHREEALSRAEKSISIERTFEAFF 711 (855)
Q Consensus 639 ~~~~~~~~a~~l~~~g---~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~----~g~~~eAl~~~~kal~~~p~~~a~~ 711 (855)
++...+.+|.++.... ++..|.++|..|.+. ...++.+.+|.++.. ..+...|..+|+++-+..+ ..+.+
T Consensus 324 ~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~-~~A~~ 400 (552)
T KOG1550|consen 324 NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN-PSAAY 400 (552)
T ss_pred CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC-hhhHH
Confidence 4445566666655544 577899999888765 467788888888775 3578899999999998872 24455
Q ss_pred HHHHHHHHC-CCCchhHHHHHHHHHHHhcCCCCCCCHH-HHHHHHHHHHHH----cCCHHHHHHHHHHHHhcccHHHHHH
Q 003035 712 LKAYILADT-NLDPESSTYVIQLLEEALRCPSDGLRKG-QALNNLGSIYVE----CGKLDQAENCYINALDIKHTRAHQG 785 (855)
Q Consensus 712 ~lg~~~~~~-g~~~~A~~~~~~lle~al~~~~~~~~p~-~a~~~LG~~y~~----~g~~~~A~~~~~kAL~~~~~~a~~~ 785 (855)
.++..+... +.++.+... +.....+..+...-. ..+......... ..+...+...+.++-...++.+...
T Consensus 401 ~~~~~~~~g~~~~~~~~~~----~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~ 476 (552)
T KOG1550|consen 401 LLGAFYEYGVGRYDTALAL----YLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILK 476 (552)
T ss_pred HHHHHHHHccccccHHHHH----HHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhh
Confidence 555444333 777776665 433331111100001 111111111111 1266777888887777668889999
Q ss_pred HHHHHHHc----CCHHHHHHHHHHHHHHccCCHHHHHHHhh-------cCCHHHHHHHHHHHHhcCCCCcccc
Q 003035 786 LARVYYLK----NELKAAYDEMTKLLEKAQYSASAFEKRSE-------YSDREMAKNDLNMATQLDPLRTYPY 847 (855)
Q Consensus 786 lg~~~~~~----g~~~~A~~~~~kal~~~p~~~~a~~~lg~-------~g~~eeA~~~~~kAl~l~P~~~~~~ 847 (855)
+|.+|+.- .++..|...|.++-... +.+..++|+ ......|+.+|+++.+.+.....|.
T Consensus 477 lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~~~~~~ 546 (552)
T KOG1550|consen 477 LGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSRAYLPV 546 (552)
T ss_pred hcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCchhhhHH
Confidence 99888775 37899999999998877 888899998 2227999999999999887765554
No 251
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.11 E-value=0.0011 Score=46.35 Aligned_cols=34 Identities=24% Similarity=0.267 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCC
Q 003035 780 TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS 813 (855)
Q Consensus 780 ~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~ 813 (855)
+.+++.+|.++..+|++++|++.|+++++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4678899999999999999999999999999875
No 252
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.019 Score=58.21 Aligned_cols=174 Identities=15% Similarity=0.061 Sum_probs=113.2
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc----CCh---HHHHHHHHHHHHCCC
Q 003035 650 LLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE----RTF---EAFFLKAYILADTNL 722 (855)
Q Consensus 650 l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~----p~~---~a~~~lg~~~~~~g~ 722 (855)
....+++++|...|.++-. .|...++++.|=..|.++-+++ ..+ ..|...+.+| +.++
T Consensus 24 fgg~~k~eeAadl~~~Aan--------------~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~ 88 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERAAN--------------MYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVD 88 (288)
T ss_pred cCCCcchHHHHHHHHHHHH--------------HHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccC
Confidence 3445689999988887643 3333444444444444443332 111 3333334444 4458
Q ss_pred CchhHHHHHHHHHHHhcCCCCCCCHH--------HHHHHHHHHHHHc-CCHHHHHHHHHHHHhcc-----c---HHHHHH
Q 003035 723 DPESSTYVIQLLEEALRCPSDGLRKG--------QALNNLGSIYVEC-GKLDQAENCYINALDIK-----H---TRAHQG 785 (855)
Q Consensus 723 ~~~A~~~~~~lle~al~~~~~~~~p~--------~a~~~LG~~y~~~-g~~~~A~~~~~kAL~~~-----~---~~a~~~ 785 (855)
..+|+.. +++++ ++.-+ .-+..+|.+|..- .++++|+.+|++|-+.. . -..+..
T Consensus 89 ~~eAv~c----L~~ai-----eIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lK 159 (288)
T KOG1586|consen 89 PEEAVNC----LEKAI-----EIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLK 159 (288)
T ss_pred hHHHHHH----HHHHH-----HHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHH
Confidence 8888888 89888 44332 4455788888765 89999999999998765 1 134455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHH-------Hhh----cCCHHHHHHHHHHHHhcCCCCcccc
Q 003035 786 LARVYYLKNELKAAYDEMTKLLEKAQYSASAFEK-------RSE----YSDREMAKNDLNMATQLDPLRTYPY 847 (855)
Q Consensus 786 lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~-------lg~----~g~~eeA~~~~~kAl~l~P~~~~~~ 847 (855)
.+..-...++|.+|+..|+++....-+|+-.-+. -|. .++.=.+...+++-.+++|.++...
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR 232 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR 232 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence 5666677889999999999998876666543222 222 3566677888888889999887543
No 253
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.08 E-value=0.00042 Score=70.53 Aligned_cols=63 Identities=14% Similarity=0.138 Sum_probs=50.7
Q ss_pred EEEEEcCeEEEeeehhhhcCCHHHHHhhcCCCccCCC--CeeEecCCCCCHHHHHHHHHHhccCCCC
Q 003035 220 VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKR--KTIDFSHDGVSVEGLRAVEVYTRTSRVD 284 (855)
Q Consensus 220 V~f~v~~~~~~aHr~vLaa~S~~F~~mf~~~~~E~~~--~~I~l~~~~is~~~~~~ll~y~YTg~l~ 284 (855)
|-++.....||+||++|++|||+|+.+.+++-.-... -.|.+ -+++.++|.++|+|+|||+..
T Consensus 133 ldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~--ag~dm~~feafLh~l~tgEfg 197 (401)
T KOG2838|consen 133 LDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKF--AGFDMDAFEAFLHSLITGEFG 197 (401)
T ss_pred ceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhh--hccChHHHHHHHHHHHhcccc
Confidence 6667778899999999999999999998765221111 15666 789999999999999999987
No 254
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.07 E-value=0.00095 Score=46.91 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCC
Q 003035 780 TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS 813 (855)
Q Consensus 780 ~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~ 813 (855)
+.+++++|.++..+|++++|+..|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3577888888888888888888888888888864
No 255
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.06 E-value=0.009 Score=64.49 Aligned_cols=133 Identities=12% Similarity=0.073 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHH
Q 003035 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYD-TGHREEALSRAEKSISIERTF-EAFFLKAYILAD 719 (855)
Q Consensus 642 ~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~-~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~ 719 (855)
+|........+.+..+.|...|.+|++..+-..++|...|.+.+. .++.+.|...|+.+++..|.+ ..|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 455555666677779999999999997777788999999999777 566677999999999999999 888888899999
Q ss_pred CCCCchhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 003035 720 TNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK 778 (855)
Q Consensus 720 ~g~~~~A~~~~~~lle~al~~~~~~~~p~~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~ 778 (855)
.++.+.|... |++++...........+|......-...|+++...+.++++.+.-
T Consensus 83 ~~d~~~aR~l----fer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 83 LNDINNARAL----FERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp TT-HHHHHHH----HHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred hCcHHHHHHH----HHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999888 999993221111011578888888888899998888888888765
No 256
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.03 E-value=0.0012 Score=46.26 Aligned_cols=34 Identities=29% Similarity=0.426 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh
Q 003035 674 HERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (855)
Q Consensus 674 ~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~ 707 (855)
+++++.+|.+++.+|++++|+..|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4577888888888888888888888888888764
No 257
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.97 E-value=0.099 Score=59.34 Aligned_cols=99 Identities=16% Similarity=0.173 Sum_probs=76.8
Q ss_pred HHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHH
Q 003035 714 AYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG---QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLAR 788 (855)
Q Consensus 714 g~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~---~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~ 788 (855)
|.-+..+|+...|++. +..|+ ...|. -...+|+.+....|-...|-..+.++|.+. .+..++.+|.
T Consensus 614 glywr~~gn~~~a~~c----l~~a~-----~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~ 684 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIAC----LQRAL-----NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGN 684 (886)
T ss_pred cceeeecCCcHHHHHH----HHHHh-----ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcch
Confidence 3444557888888888 88888 66666 567788888888888888888888888887 7778888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHh
Q 003035 789 VYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS 821 (855)
Q Consensus 789 ~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg 821 (855)
.+....+.++|++.++.|+++.|+++..-+.|-
T Consensus 685 ~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~ 717 (886)
T KOG4507|consen 685 AYLALKNISGALEAFRQALKLTTKCPECENSLK 717 (886)
T ss_pred hHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHH
Confidence 888888888888888888888888877655443
No 258
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.95 E-value=0.09 Score=53.82 Aligned_cols=149 Identities=15% Similarity=0.165 Sum_probs=89.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-------HHHHHHHHHHHHC
Q 003035 648 LLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-------EAFFLKAYILADT 720 (855)
Q Consensus 648 ~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-------~a~~~lg~~~~~~ 720 (855)
.+|.+.|..+.|--.+++|-+ .....+.++|++.|++++.+-... +.+-..+.+|...
T Consensus 99 ~lY~E~GspdtAAmaleKAak---------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl 163 (308)
T KOG1585|consen 99 ELYVECGSPDTAAMALEKAAK---------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL 163 (308)
T ss_pred HHHHHhCCcchHHHHHHHHHH---------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh
Confidence 445555555555555554433 345567788888888888764322 4455667889999
Q ss_pred CCCchhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc------cHHHHHHHHHHHHHcC
Q 003035 721 NLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK------HTRAHQGLARVYYLKN 794 (855)
Q Consensus 721 g~~~~A~~~~~~lle~al~~~~~~~~p~~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~------~~~a~~~lg~~~~~~g 794 (855)
.++++|....++...-++++-. --.+..++...-.+|.-..+|..|..+|++.-++. +..++.+|-..| ..|
T Consensus 164 ~kf~Eaa~a~lKe~~~~~~~~~-y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~g 241 (308)
T KOG1585|consen 164 EKFTEAATAFLKEGVAADKCDA-YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEG 241 (308)
T ss_pred HHhhHHHHHHHHhhhHHHHHhh-cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccC
Confidence 9999988883322222221110 00111344444455566679999999999988876 556666665554 567
Q ss_pred CHHHHHHHHHHHHHHccCC
Q 003035 795 ELKAAYDEMTKLLEKAQYS 813 (855)
Q Consensus 795 ~~~~A~~~~~kal~~~p~~ 813 (855)
|.++.-+....-.-.+-|+
T Consensus 242 D~E~~~kvl~sp~~r~MDn 260 (308)
T KOG1585|consen 242 DIEEIKKVLSSPTVRNMDN 260 (308)
T ss_pred CHHHHHHHHcChHhhhhhH
Confidence 7777766554443333333
No 259
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.95 E-value=0.023 Score=65.86 Aligned_cols=152 Identities=14% Similarity=-0.012 Sum_probs=95.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHH-------HHHHHHH-H----HCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHH
Q 003035 653 LNCQKAAMRCLRLARNHSSSEHERL-------VYEGWIL-Y----DTGHREEALSRAEKSISIERTF-EAFFLKAYILAD 719 (855)
Q Consensus 653 ~g~~~~A~~~l~~al~~~p~~~~~~-------~~lg~~~-~----~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~ 719 (855)
.|+-+.+++.+.++.+ .++-.... ++.+... . ...+.+.|.+.++...+..|+. -..+..|.++..
T Consensus 201 ~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~ 279 (468)
T PF10300_consen 201 SGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL 279 (468)
T ss_pred CCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 4777777777777766 22221111 1111111 1 2345677777777777778877 667777888888
Q ss_pred CCCCchhHHHHHHHHHHHhcCCCCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHcCC
Q 003035 720 TNLDPESSTYVIQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDIK---HTRAHQGLARVYYLKNE 795 (855)
Q Consensus 720 ~g~~~~A~~~~~~lle~al~~~~~~~~p~-~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~---~~~a~~~lg~~~~~~g~ 795 (855)
.|+.++|++. |++++....+-.+-. -.+..+|+++.-+++|++|.++|.+.++.+ ...-.+..|.++...|+
T Consensus 280 ~g~~~~Ai~~----~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~ 355 (468)
T PF10300_consen 280 KGNLEEAIES----FERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGR 355 (468)
T ss_pred hcCHHHHHHH----HHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcc
Confidence 8888888888 777772111100001 566677888888888888888888887776 33334556777777777
Q ss_pred H-------HHHHHHHHHHHHH
Q 003035 796 L-------KAAYDEMTKLLEK 809 (855)
Q Consensus 796 ~-------~~A~~~~~kal~~ 809 (855)
. ++|.+.|.++-..
T Consensus 356 ~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 356 EEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred chhhhhhHHHHHHHHHHHHHH
Confidence 7 6666666666543
No 260
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.95 E-value=1.6 Score=53.01 Aligned_cols=181 Identities=15% Similarity=0.039 Sum_probs=117.3
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCChHHHHHHHHH
Q 003035 637 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYI 716 (855)
Q Consensus 637 p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~~a~~~lg~~ 716 (855)
-+.+.+|-++|...++.|...+|++.|-+| +++..+...-.+..+.|.|++-++++.-+-+.-.+...-..+-.+
T Consensus 1101 ~n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~A 1175 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFA 1175 (1666)
T ss_pred hCChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHH
Confidence 345778999999999999999999999653 567778888888999999999999998877654433222234445
Q ss_pred HHHCCCCchhHHHH------------HHHHHHHhcCCCCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----
Q 003035 717 LADTNLDPESSTYV------------IQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDIK----- 778 (855)
Q Consensus 717 ~~~~g~~~~A~~~~------------~~lle~al~~~~~~~~p~-~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~----- 778 (855)
|.+.++..+-.... -+||+...-....-+... .-|..|+.++...|+|+.|.+.-+||-...
T Consensus 1176 yAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~V 1255 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEV 1255 (1666)
T ss_pred HHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHH
Confidence 55555555433220 012222110000000011 345568888999999999999988886543
Q ss_pred ----------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh
Q 003035 779 ----------------------HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE 822 (855)
Q Consensus 779 ----------------------~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~ 822 (855)
+..-+-.+-..|..+|-+++-+..++.++-+..-+-..+..||.
T Consensus 1256 cfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELai 1321 (1666)
T KOG0985|consen 1256 CFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAI 1321 (1666)
T ss_pred HHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHH
Confidence 22334556677778888888888888887665444444444444
No 261
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.033 Score=58.80 Aligned_cols=146 Identities=16% Similarity=0.084 Sum_probs=106.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCChHHHHHHH--HHH
Q 003035 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKA--YIL 717 (855)
Q Consensus 640 ~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~~a~~~lg--~~~ 717 (855)
...-+..+.-.+..|++.+|...|..+++.+|++.++...++.++...|+.+.|...+...-.-..+....-..+ ..+
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll 213 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL 213 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 344566677788999999999999999999999999999999999999999999888765433333221111122 334
Q ss_pred HHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc----cHHHHHHHHHHHH
Q 003035 718 ADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK----HTRAHQGLARVYY 791 (855)
Q Consensus 718 ~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~----~~~a~~~lg~~~~ 791 (855)
......++... +++.+ ..+|+ ++-+.++..+...|+.++|.+.+-..++.+ +..+.-.+-.++.
T Consensus 214 ~qaa~~~~~~~-----l~~~~-----aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~ 283 (304)
T COG3118 214 EQAAATPEIQD-----LQRRL-----AADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFE 283 (304)
T ss_pred HHHhcCCCHHH-----HHHHH-----HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHH
Confidence 44444444333 45556 66776 888999999999999999999998888776 5555555555555
Q ss_pred HcCC
Q 003035 792 LKNE 795 (855)
Q Consensus 792 ~~g~ 795 (855)
..|.
T Consensus 284 ~~g~ 287 (304)
T COG3118 284 AFGP 287 (304)
T ss_pred hcCC
Confidence 5553
No 262
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.92 E-value=0.03 Score=55.55 Aligned_cols=112 Identities=10% Similarity=0.032 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhcCCCcHHHH---HHHHHHHHHCCCHHHHHHHHHHHHhccCCh----HHHHHHHHHHHHCCCCchhHHHH
Q 003035 658 AAMRCLRLARNHSSSEHERL---VYEGWILYDTGHREEALSRAEKSISIERTF----EAFFLKAYILADTNLDPESSTYV 730 (855)
Q Consensus 658 ~A~~~l~~al~~~p~~~~~~---~~lg~~~~~~g~~~eAl~~~~kal~~~p~~----~a~~~lg~~~~~~g~~~~A~~~~ 730 (855)
+.....++...-+|....+- ..++..+.+.|++++|+..++.++....+. -+-.++|.+...+|++++|+..
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~- 148 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKT- 148 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHH-
Confidence 55566667777776655443 567889999999999999999999765544 5667899999999999999999
Q ss_pred HHHHHHHhcCCCCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 003035 731 IQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDIK 778 (855)
Q Consensus 731 ~~lle~al~~~~~~~~p~-~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~ 778 (855)
+.... +-.=. ..-...|+++...|+-++|...|++|++..
T Consensus 149 ---L~t~~-----~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 149 ---LDTIK-----EESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred ---Hhccc-----cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 76554 21111 345568999999999999999999999986
No 263
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.0022 Score=64.93 Aligned_cols=92 Identities=16% Similarity=0.108 Sum_probs=84.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHH
Q 003035 678 VYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNL 754 (855)
Q Consensus 678 ~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~L 754 (855)
..-|.-++...+|+.|+..|-++|.++|.. ..|.+.+.++.+..+++.+... -.+|+ .+.|+ .+++.+
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~d----crral-----ql~~N~vk~h~fl 84 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEED----CRRAL-----QLDPNLVKAHYFL 84 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhh----HHHHH-----hcChHHHHHHHHH
Confidence 345677788889999999999999999999 8888999999999999999999 99999 99999 899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcc
Q 003035 755 GSIYVECGKLDQAENCYINALDIK 778 (855)
Q Consensus 755 G~~y~~~g~~~~A~~~~~kAL~~~ 778 (855)
|.+......+++|+.++++|..+.
T Consensus 85 g~~~l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 85 GQWLLQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred HHHHHhhccccHHHHHHHHHHHHH
Confidence 999999999999999999996653
No 264
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.019 Score=59.08 Aligned_cols=159 Identities=14% Similarity=0.067 Sum_probs=85.6
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCc-hhH
Q 003035 651 LRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTG-HREEALSRAEKSISIERTF-EAFFLKAYILADTNLDP-ESS 727 (855)
Q Consensus 651 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g-~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~-~A~ 727 (855)
.+..+-+.|++..+.++.++|.+..+|.++-.++..++ +..+-+.++.+.++-+|++ ..|...-.+....|++. .-+
T Consensus 54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rEL 133 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFREL 133 (318)
T ss_pred hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchH
Confidence 34445566666666666666666666655555555443 3555566666666666666 66665555555555444 333
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003035 728 TYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTK 805 (855)
Q Consensus 728 ~~~~~lle~al~~~~~~~~p~~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~k 805 (855)
+. .+.++ ..+ +..++...-|+...-+.++.-+.+-..
T Consensus 134 ef----~~~~l-------------------------------------~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~ 172 (318)
T KOG0530|consen 134 EF----TKLML-------------------------------------DDDAKNYHAWSHRQWVLRFFKDYEDELAYADE 172 (318)
T ss_pred HH----HHHHH-------------------------------------hccccchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 33 44444 444 455555555555555555555555555
Q ss_pred HHHHccCCHHHHHHHhh-----c-----CCHHHHHHHHHHHHhcCCCCcccchhh
Q 003035 806 LLEKAQYSASAFEKRSE-----Y-----SDREMAKNDLNMATQLDPLRTYPYRYR 850 (855)
Q Consensus 806 al~~~p~~~~a~~~lg~-----~-----g~~eeA~~~~~kAl~l~P~~~~~~~~~ 850 (855)
.++.+--|.++|+++-. . -..+.-+.+..+.+.+.|.+..||+|-
T Consensus 173 Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL 227 (318)
T KOG0530|consen 173 LLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYL 227 (318)
T ss_pred HHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHH
Confidence 55555555555555443 1 122333444555555555555555554
No 265
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.78 E-value=0.13 Score=55.73 Aligned_cols=174 Identities=20% Similarity=0.170 Sum_probs=90.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHC----CCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHH----CCCC
Q 003035 653 LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDT----GHREEALSRAEKSISIERTF-EAFFLKAYILAD----TNLD 723 (855)
Q Consensus 653 ~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~----g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~----~g~~ 723 (855)
.+++..|...+..+-.. .++...+.+|..+... .+..+|+..|+.+.+ ... .+.+.+|.+|.. ..+.
T Consensus 54 ~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~gv~~d~ 129 (292)
T COG0790 54 PPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGLAEALFNLGLMYANGRGVPLDL 129 (292)
T ss_pred cccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCCCcccCH
Confidence 34455555555554441 1224455555555442 345556666553322 222 455556665555 2245
Q ss_pred chhHHHHHHHHHHHhcCCCCCCCHHHH---HHHHHHHHHHc----C---CHHHHHHHHHHHHhcccHHHHHHHHHHHHHc
Q 003035 724 PESSTYVIQLLEEALRCPSDGLRKGQA---LNNLGSIYVEC----G---KLDQAENCYINALDIKHTRAHQGLARVYYLK 793 (855)
Q Consensus 724 ~~A~~~~~~lle~al~~~~~~~~p~~a---~~~LG~~y~~~----g---~~~~A~~~~~kAL~~~~~~a~~~lg~~~~~~ 793 (855)
.+|... |++|. ......+ ...+|..|..- + +...|...|.++-...++.+.+.+|++|..-
T Consensus 130 ~~A~~~----~~~Aa-----~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G 200 (292)
T COG0790 130 VKALKY----YEKAA-----KLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKG 200 (292)
T ss_pred HHHHHH----HHHHH-----HcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcC
Confidence 555555 66665 3222223 55555555543 1 2225666666666655666666666555442
Q ss_pred ----CCHHHHHHHHHHHHHHccCCHHHHHHHhh---c---------------CCHHHHHHHHHHHHhcCC
Q 003035 794 ----NELKAAYDEMTKLLEKAQYSASAFEKRSE---Y---------------SDREMAKNDLNMATQLDP 841 (855)
Q Consensus 794 ----g~~~~A~~~~~kal~~~p~~~~a~~~lg~---~---------------g~~eeA~~~~~kAl~l~P 841 (855)
.|+.+|..+|+++-+... ..+.+.++. . .+...|..++.++....+
T Consensus 201 ~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 201 LGVPRDLKKAFRWYKKAAEQGD--GAACYNLGLMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred CCCCcCHHHHHHHHHHHHHCCC--HHHHHHHHHHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 266666666666666554 445555544 1 266677777776665543
No 266
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.77 E-value=2.1 Score=51.68 Aligned_cols=415 Identities=14% Similarity=0.117 Sum_probs=217.6
Q ss_pred HHHHHHHhhcccccchhhHHHHHHHHhhchhh--HH-HHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhcch------hh
Q 003035 383 LYYFLSQVAMEKDRVSNTTVMLLERLGECSTE--RW-QRMLALHQLGCVMFEREEYKDACYYFEAAADAGHI------YS 453 (855)
Q Consensus 383 l~~~La~~~~~~~~~~~~a~~~le~~~~~~~~--~~-~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~~------~a 453 (855)
.++-+|.++.++-...+.|...|+|+...... -. .+-.+.+.++.++.+.+... |....+++++.-.. .-
T Consensus 61 ~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~ 139 (608)
T PF10345_consen 61 VRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYY 139 (608)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHH
Confidence 46678888886655599999999998764322 11 24556678899999888887 99999998864211 11
Q ss_pred hhhHH--HHHHHhCChHHHHHHHHhHHHcCC--CchHHHHHH------hh--ccCcchHHHHHHHHHH------hCCCCc
Q 003035 454 LAGLA--RAKYKVGQQYSAYKLINSIISEHK--PTGWMYQER------SL--YNLGREKIVDLNYASE------LDPTLS 515 (855)
Q Consensus 454 ~~~la--~~~~~~g~~~~A~~~l~~~i~~~p--~~~~~y~~~------~~--~~~~~~A~~~l~~a~~------ldP~~~ 515 (855)
.+.+- ..+...++...|.+.++.+..... .+..++... .. .+.++++++.+.++.. .+|+..
T Consensus 140 ~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~ 219 (608)
T PF10345_consen 140 AFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVH 219 (608)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCC
Confidence 22222 223233789999999998877653 333322111 11 1334666777666632 233332
Q ss_pred h----hHHH--HHHHHHHhCCHHHHHHHHHHH---Hc---cCC-------C--------------------------Hh-
Q 003035 516 F----PYKY--RAVAKMEEGQIRAAISEIDRI---IV---FKL-------S--------------------------VD- 549 (855)
Q Consensus 516 ~----a~~~--~a~~~~~~~~~~~A~~~~~k~---l~---~~p-------~--------------------------~~- 549 (855)
. ++.. ...+++..|+++.+...+++. +. ..+ + .+
T Consensus 220 ~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l 299 (608)
T PF10345_consen 220 IPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEEL 299 (608)
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHH
Confidence 2 2222 223667788877776554433 21 111 0 01
Q ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchh---hhhcccchhHHHHHHHHHhhccChhhhHHHHhhhccc---c
Q 003035 550 ---CLELRAWLFIAADDYESALRDTLALLALESNYM---MFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSS---V 620 (855)
Q Consensus 550 ---~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~---~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~---~ 620 (855)
++.+-|......|..+.|.+.+.+++..-.+.. ..........+. ....-...-.+....|..|.. .
T Consensus 300 ~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~----~~~~~~~~l~~~~~~y~~~~~~~~~ 375 (608)
T PF10345_consen 300 YALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEAS----ERIQWLRYLQCYLLFYQIWCNFIRG 375 (608)
T ss_pred HHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHH----HhHHHHHHHHHHHHHHHHHHHHHCc
Confidence 111225555666766688877777775322211 000000000000 000000001111122221111 0
Q ss_pred cc---cchHHHHHHHHHcCCC------ChHHHHHHHHHHHHcCCHHHHHHHHH--------HHHhcCCCcHHHH----HH
Q 003035 621 DD---IGSLAVINQMLINDPG------KSFLRFRQSLLLLRLNCQKAAMRCLR--------LARNHSSSEHERL----VY 679 (855)
Q Consensus 621 ~d---~~al~~~~~~l~~~p~------~~~~~~~~a~~l~~~g~~~~A~~~l~--------~al~~~p~~~~~~----~~ 679 (855)
+- ...+..+.+.....|. .+.+++..|..+...|+.+.|...|. .+....+ ..+.+ .+
T Consensus 376 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~-~~El~ila~LN 454 (608)
T PF10345_consen 376 DWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSK-FRELYILAALN 454 (608)
T ss_pred CHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCc-chHHHHHHHHH
Confidence 10 1122333334433343 47889999999999999999999998 3333333 34443 56
Q ss_pred HHHHHHHCCCHHH----HHHHHHHHHh---ccCCh---HHHHHHHHHH--HHCCCCchhHHHHHHHHHHHhcCCCCCCCH
Q 003035 680 EGWILYDTGHREE----ALSRAEKSIS---IERTF---EAFFLKAYIL--ADTNLDPESSTYVIQLLEEALRCPSDGLRK 747 (855)
Q Consensus 680 lg~~~~~~g~~~e----Al~~~~kal~---~~p~~---~a~~~lg~~~--~~~g~~~~A~~~~~~lle~al~~~~~~~~p 747 (855)
+.+++...+.... +-..+++.-. ..|+. .++..+-.++ ...-...++... +.++++........
T Consensus 455 l~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~----l~~~L~~~~~~~~n 530 (608)
T PF10345_consen 455 LAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRH----LQEALKMANNKLGN 530 (608)
T ss_pred HHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHH----HHHHHHHHHHhhcc
Confidence 7788887766444 3333332222 22221 2222221122 122233466666 66665333012222
Q ss_pred H----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc------cHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHH
Q 003035 748 G----QALNNLGSIYVECGKLDQAENCYINALDIK------HTRAH-----QGLARVYYLKNELKAAYDEMTKLLE 808 (855)
Q Consensus 748 ~----~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~------~~~a~-----~~lg~~~~~~g~~~~A~~~~~kal~ 808 (855)
. -+++.+|..++ .|+..+..+...++.... ....| .-+...+...|+.++|....++.-.
T Consensus 531 ~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 531 SQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred chHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 2 56778888888 788777766666665433 11122 2345567889999999888776544
No 267
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.73 E-value=0.69 Score=60.91 Aligned_cols=121 Identities=12% Similarity=0.007 Sum_probs=76.9
Q ss_pred HhhhhHhhhhcHHHHHHHHHHH-HHh--cc-hhhhhhHH-HHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHhhccCcc
Q 003035 424 QLGCVMFEREEYKDACYYFEAA-ADA--GH-IYSLAGLA-RAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGR 498 (855)
Q Consensus 424 ~LG~~~l~~g~~~eA~~~~~~A-l~~--~~-~~a~~~la-~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~~~~~~ 498 (855)
.||.+-++.|.|..|.-++++- ... ++ ..+++.+- .+|...++.+.-...... ....|..-.-.......+...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~sl~~qil~~e~~g~~~ 1466 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADPSLYQQILEHEASGNWA 1466 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCccHHHHHHHHHhhccHH
Confidence 5788889999999999999883 111 11 12233333 367777776654443322 112222211112222335667
Q ss_pred hHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccC
Q 003035 499 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFK 545 (855)
Q Consensus 499 ~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~ 545 (855)
.|...|+.++..+|+....+...-......+.++..+...+-...-.
T Consensus 1467 da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~ 1513 (2382)
T KOG0890|consen 1467 DAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR 1513 (2382)
T ss_pred HHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhcc
Confidence 89999999999999988888777777778889998888777766533
No 268
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.056 Score=57.11 Aligned_cols=156 Identities=14% Similarity=0.037 Sum_probs=100.2
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHccCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHH
Q 003035 520 YRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLN 598 (855)
Q Consensus 520 ~~a~~~~~~~~~~~A~~~~~k~l~~~p-~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~ 598 (855)
..+.-.+..|++.+|...|+.++...| +.++...++.+|...|+.+.|...+.. .|.... ......
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~----lP~~~~------~~~~~~--- 205 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA----LPLQAQ------DKAAHG--- 205 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh----Ccccch------hhHHHH---
Confidence 345567788999999999999999888 457777889999999999998765543 343211 000000
Q ss_pred HHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CcHHH
Q 003035 599 HHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS--SEHER 676 (855)
Q Consensus 599 ~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p--~~~~~ 676 (855)
...++.+..+..... ....+.+.+..+|++..+.+.+|..+...|++++|.+.+-..+..+- .+..+
T Consensus 206 --------l~a~i~ll~qaa~~~---~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~ 274 (304)
T COG3118 206 --------LQAQIELLEQAAATP---EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEA 274 (304)
T ss_pred --------HHHHHHHHHHHhcCC---CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHH
Confidence 011122222222222 23456677788888888888888888888888888888877777654 34455
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHH
Q 003035 677 LVYEGWILYDTGHREEALSRAEK 699 (855)
Q Consensus 677 ~~~lg~~~~~~g~~~eAl~~~~k 699 (855)
...+-.++...|.-|.+...|++
T Consensus 275 Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 275 RKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHH
Confidence 55666666666644444444443
No 269
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.68 E-value=1 Score=49.91 Aligned_cols=170 Identities=15% Similarity=0.012 Sum_probs=109.8
Q ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-----HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcC-CCC
Q 003035 670 SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-----EAFFLKAYILADTNLDPESSTYVIQLLEEALRC-PSD 743 (855)
Q Consensus 670 ~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-----~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~-~~~ 743 (855)
.......+...+.+....|+++.|...+.++...++.. ...+..+..+...|+..+|+.. ++..+++ ...
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~----L~~~~~~~~~~ 217 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQK----LRELLKCRLSK 217 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHH----HHHHHHHHhhh
Confidence 44567788899999999999999999999999887432 7778889999999999999999 9998842 211
Q ss_pred CCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHccCCHHH
Q 003035 744 GLRKG-QALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLK------NELKAAYDEMTKLLEKAQYSASA 816 (855)
Q Consensus 744 ~~~p~-~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~~~~a~~~lg~~~~~~------g~~~~A~~~~~kal~~~p~~~~a 816 (855)
...+. ......+..+................+ -..++..+|...... ++.++++..|+++++..|+...+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~ 294 (352)
T PF02259_consen 218 NIDSISNAELKSGLLESLEVISSTNLDKESKEL---KAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKA 294 (352)
T ss_pred ccccccHHHHhhccccccccccccchhhhhHHH---HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHH
Confidence 11111 111111110000000000000000000 245666777777666 67888888888888888888888
Q ss_pred HHHHhh--------c--C-----------CHHHHHHHHHHHHhcCCCCccc
Q 003035 817 FEKRSE--------Y--S-----------DREMAKNDLNMATQLDPLRTYP 846 (855)
Q Consensus 817 ~~~lg~--------~--g-----------~~eeA~~~~~kAl~l~P~~~~~ 846 (855)
|..+|. . + -...|+..|-+++...|...+.
T Consensus 295 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~~~~ 345 (352)
T PF02259_consen 295 WHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKYVRQ 345 (352)
T ss_pred HHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCchHH
Confidence 888777 0 0 0135888999999998875443
No 270
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.66 E-value=1.8 Score=49.42 Aligned_cols=173 Identities=14% Similarity=0.032 Sum_probs=102.2
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHhccCC-h-HHHHHHHHHHHHCCC--
Q 003035 661 RCLRLARNHSSSEHERLVYEGWILYDTGH--------------REEALSRAEKSISIERT-F-EAFFLKAYILADTNL-- 722 (855)
Q Consensus 661 ~~l~~al~~~p~~~~~~~~lg~~~~~~g~--------------~~eAl~~~~kal~~~p~-~-~a~~~lg~~~~~~g~-- 722 (855)
-.|++++..-+..+++|+.-+..+...++ .+++...|+++++.--. + ..|+.++.--...-+
T Consensus 266 yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n 345 (656)
T KOG1914|consen 266 YAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDN 345 (656)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccc
Confidence 35677777777778887665555544444 67778888887775432 2 444444433222222
Q ss_pred -CchhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHH-HHHHcCCHHH
Q 003035 723 -DPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLAR-VYYLKNELKA 798 (855)
Q Consensus 723 -~~~A~~~~~~lle~al~~~~~~~~p~~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~-~~~~~g~~~~ 798 (855)
++..... +++++... ..+|+-+|.++-..-.+..=...|...|.+|-+.. ...++..-|. -|+..+|..-
T Consensus 346 ~~~~~~~~----~~~ll~~~--~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~ 419 (656)
T KOG1914|consen 346 KEKKVHEI----YNKLLKIE--DIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKET 419 (656)
T ss_pred hhhhhHHH----HHHHHhhh--ccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhH
Confidence 3444445 66666222 23444444444444444455677777777777665 2123322222 2445677888
Q ss_pred HHHHHHHHHHHccCCHHHHHHHhh----cCCHHHHHHHHHHHHhc
Q 003035 799 AYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQL 839 (855)
Q Consensus 799 A~~~~~kal~~~p~~~~a~~~lg~----~g~~eeA~~~~~kAl~l 839 (855)
|...|+-.++..+|.+.+-+.... .++-..|+..|++++.-
T Consensus 420 AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 420 AFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 888888888888887776555444 67777777777777764
No 271
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.64 E-value=0.016 Score=67.20 Aligned_cols=115 Identities=17% Similarity=0.113 Sum_probs=82.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-----HHHHHHHHHHHHCCCCchhH
Q 003035 653 LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-----EAFFLKAYILADTNLDPESS 727 (855)
Q Consensus 653 ~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-----~a~~~lg~~~~~~g~~~~A~ 727 (855)
....+.|.+.++...+..|+.+-.++..|.++...|+.++|++.|++++....+. -.++.+|+++.-+++|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 4456777788888888888877777888888888888888888888777544332 55677888888888888888
Q ss_pred HHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHh
Q 003035 728 TYVIQLLEEALRCPSDGLR---KGQALNNLGSIYVECGKL-------DQAENCYINALD 776 (855)
Q Consensus 728 ~~~~~lle~al~~~~~~~~---p~~a~~~LG~~y~~~g~~-------~~A~~~~~kAL~ 776 (855)
.+ +.+.. +.. +.-..+..|.++...|+. ++|.+.|.++-.
T Consensus 326 ~~----f~~L~-----~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 326 EY----FLRLL-----KESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HH----HHHHH-----hccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 88 77666 322 124555677778888877 677777766654
No 272
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.63 E-value=0.0015 Score=72.63 Aligned_cols=90 Identities=22% Similarity=0.210 Sum_probs=68.1
Q ss_pred HHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHhhc----cCcchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHH
Q 003035 458 ARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLY----NLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRA 533 (855)
Q Consensus 458 a~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~~----~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~ 533 (855)
|.-.+.-++++.|+..|.++|+.+|+++-.+..|+.. .....|+.|+.+|+++||+...+|+.+|.+.+..+++.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 3445566778888888888888888877666666431 334678888888888888888888888888888888888
Q ss_pred HHHHHHHHHccCCC
Q 003035 534 AISEIDRIIVFKLS 547 (855)
Q Consensus 534 A~~~~~k~l~~~p~ 547 (855)
|...|++.....|+
T Consensus 91 A~~~l~~~~~l~Pn 104 (476)
T KOG0376|consen 91 ALLDLEKVKKLAPN 104 (476)
T ss_pred HHHHHHHhhhcCcC
Confidence 88888888887774
No 273
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.60 E-value=0.23 Score=53.77 Aligned_cols=160 Identities=18% Similarity=0.093 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhccCC--hHHH
Q 003035 641 FLRFRQSLLLLR----LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYD----TGHREEALSRAEKSISIERT--FEAF 710 (855)
Q Consensus 641 ~~~~~~a~~l~~----~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~----~g~~~eAl~~~~kal~~~p~--~~a~ 710 (855)
...+.++.++.. ..+..+|...|+. ......+.+.+.+|.++.. ..+..+|..+|+++...... ..+.
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~--~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~ 151 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYRC--AAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAM 151 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHH--HhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHH
Confidence 445555555543 3457889999984 4456678899999999988 55999999999999987433 2558
Q ss_pred HHHHHHHHHCC-----C--CchhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhccc
Q 003035 711 FLKAYILADTN-----L--DPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVE----CGKLDQAENCYINALDIKH 779 (855)
Q Consensus 711 ~~lg~~~~~~g-----~--~~~A~~~~~~lle~al~~~~~~~~p~~a~~~LG~~y~~----~g~~~~A~~~~~kAL~~~~ 779 (855)
+.+|..|..-. . ...|... |.++- ......+..++|.+|.. ..++.+|...|.+|-+..+
T Consensus 152 ~~l~~~~~~g~~~~~~~~~~~~A~~~----~~~aa-----~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 152 YRLGLAYLSGLQALAVAYDDKKALYL----YRKAA-----ELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HHHHHHHHcChhhhcccHHHHhHHHH----HHHHH-----HhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 88888888763 1 1245555 88887 44444888999988865 2389999999999999888
Q ss_pred HHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHHHccC
Q 003035 780 TRAHQGLARVYYLKN---------------ELKAAYDEMTKLLEKAQY 812 (855)
Q Consensus 780 ~~a~~~lg~~~~~~g---------------~~~~A~~~~~kal~~~p~ 812 (855)
..+.+.++ +++..| +...|..++.++....+.
T Consensus 223 ~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 223 GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 88999999 777766 566666666666555443
No 274
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.53 E-value=0.61 Score=51.70 Aligned_cols=117 Identities=16% Similarity=0.144 Sum_probs=90.4
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--c-C---
Q 003035 636 DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS----SEHERLVYEGWILYDTGHREEALSRAEKSISI--E-R--- 705 (855)
Q Consensus 636 ~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p----~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~--~-p--- 705 (855)
.......+...+.+..+.|.++.|...+.++...++ ..+.+.+..+.++...|+.++|+..++..+.. . +
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 445667788889999999999999999999988663 24677888999999999999999999888871 0 0
Q ss_pred ----------------------C-----h--HHHHHHHHHHHHC------CCCchhHHHHHHHHHHHhcCCCCCCCHH--
Q 003035 706 ----------------------T-----F--EAFFLKAYILADT------NLDPESSTYVIQLLEEALRCPSDGLRKG-- 748 (855)
Q Consensus 706 ----------------------~-----~--~a~~~lg~~~~~~------g~~~~A~~~~~~lle~al~~~~~~~~p~-- 748 (855)
+ . .++..+|...... +..+++... |++++ ...|.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~----~~~a~-----~~~~~~~ 292 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKY----YKEAT-----KLDPSWE 292 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHH----HHHHH-----HhChhHH
Confidence 0 0 4555666666666 666667777 99999 88887
Q ss_pred HHHHHHHHHHHHc
Q 003035 749 QALNNLGSIYVEC 761 (855)
Q Consensus 749 ~a~~~LG~~y~~~ 761 (855)
.+|+.+|..+...
T Consensus 293 k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 293 KAWHSWALFNDKL 305 (352)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888776644
No 275
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.44 E-value=0.002 Score=68.58 Aligned_cols=87 Identities=11% Similarity=0.002 Sum_probs=78.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchh
Q 003035 648 LLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPES 726 (855)
Q Consensus 648 ~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A 726 (855)
.-.+..|.+++|++.|..+++++|.....+...|.++..+++...|++.+..++.++|+. ..|-..|.+...+|++++|
T Consensus 122 ~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 122 SEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence 334667889999999999999999999999999999999999999999999999999998 8888899999999999999
Q ss_pred HHHHHHHHHHHh
Q 003035 727 STYVIQLLEEAL 738 (855)
Q Consensus 727 ~~~~~~lle~al 738 (855)
... |+.+.
T Consensus 202 a~d----l~~a~ 209 (377)
T KOG1308|consen 202 AHD----LALAC 209 (377)
T ss_pred HHH----HHHHH
Confidence 999 88888
No 276
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.43 E-value=0.0065 Score=42.49 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCC
Q 003035 781 RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS 813 (855)
Q Consensus 781 ~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~ 813 (855)
.+++.+|.++..+|++++|++.|+++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 467788888888888888888888888888853
No 277
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.37 E-value=0.0034 Score=69.93 Aligned_cols=94 Identities=14% Similarity=0.048 Sum_probs=76.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCc
Q 003035 646 QSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDP 724 (855)
Q Consensus 646 ~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~ 724 (855)
.+.-.+..+.++.|+..|.+|++++|+.+..+-+++..+...+++..|+..+.++++++|.. .+|+..|.+....+.+.
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHH
Confidence 34455667788888888888888888888888888888888888888888888888888888 88888888888888888
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCHH
Q 003035 725 ESSTYVIQLLEEALRCPSDGLRKG 748 (855)
Q Consensus 725 ~A~~~~~~lle~al~~~~~~~~p~ 748 (855)
+|... |+... .+.|+
T Consensus 90 ~A~~~----l~~~~-----~l~Pn 104 (476)
T KOG0376|consen 90 KALLD----LEKVK-----KLAPN 104 (476)
T ss_pred HHHHH----HHHhh-----hcCcC
Confidence 88888 88888 66666
No 278
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.34 E-value=0.067 Score=57.77 Aligned_cols=134 Identities=11% Similarity=0.021 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCch-hHHHHHHHHHHHhcCCCCCCCHH--HHH
Q 003035 676 RLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPE-SSTYVIQLLEEALRCPSDGLRKG--QAL 751 (855)
Q Consensus 676 ~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~-A~~~~~~lle~al~~~~~~~~p~--~a~ 751 (855)
+|..+.....+.+..+.|-..|++|++..+-. ..|...|.+-+..++..+ |... |+.++ ...|. ..|
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~I----fe~gl-----k~f~~~~~~~ 73 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKI----FERGL-----KKFPSDPDFW 73 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHH----HHHHH-----HHHTT-HHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHH----HHHHH-----HHCCCCHHHH
Confidence 56666777777888999999999999665555 889999998777555555 9999 99999 55555 788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcc-c----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHH
Q 003035 752 NNLGSIYVECGKLDQAENCYINALDIK-H----TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFE 818 (855)
Q Consensus 752 ~~LG~~y~~~g~~~~A~~~~~kAL~~~-~----~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~ 818 (855)
......+...|+.+.|...|++++..- . ..+|......-.+.|+.+...+..+++.+..|++.....
T Consensus 74 ~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 74 LEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence 888888899999999999999999866 2 347777888888889999999999999999888665544
No 279
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.33 E-value=1.5 Score=52.81 Aligned_cols=209 Identities=15% Similarity=0.010 Sum_probs=125.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh---
Q 003035 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS---------EHERLVYEGWILYDTGHREEALSRAEKSISIERTF--- 707 (855)
Q Consensus 640 ~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~---------~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~--- 707 (855)
+.+-...++....+.++.+|...+.++..--|. .++.....|.+....|+.++|++..+.++..-|..
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~ 494 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR 494 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence 445566677778888888888887777654433 12344567888888899999999999998876654
Q ss_pred ---HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH----HHHHHHHHHHHHcCC--HHHHHHHHHHHHhcc
Q 003035 708 ---EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG----QALNNLGSIYVECGK--LDQAENCYINALDIK 778 (855)
Q Consensus 708 ---~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~----~a~~~LG~~y~~~g~--~~~A~~~~~kAL~~~ 778 (855)
.++...|.+..-.|++++|..+ .+++.+... ..+.- .+....+.+...+|+ +.+....|...-...
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~----~~~a~~~a~-~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~ 569 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALAL----MQQAEQMAR-QHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQH 569 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHH----HHHHHHHHH-HcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 5566788888888999998888 555541110 11111 344455777788883 333344443332221
Q ss_pred ------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----ccCCHHHH---HHHhh----cCCHHHHHHHHHHHHhcCC
Q 003035 779 ------HTRAHQGLARVYYLKNELKAAYDEMTKLLEK----AQYSASAF---EKRSE----YSDREMAKNDLNMATQLDP 841 (855)
Q Consensus 779 ------~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~----~p~~~~a~---~~lg~----~g~~eeA~~~~~kAl~l~P 841 (855)
+.......+.++...-+++.+.....+.++. .|..-..+ ..|+. .|++++|...+.....+--
T Consensus 570 l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 570 LEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred hhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 2222223333333333356666665555554 23222222 24444 8899998888877666644
Q ss_pred CCcccchhhhcc
Q 003035 842 LRTYPYRYRAAE 853 (855)
Q Consensus 842 ~~~~~~~~~a~~ 853 (855)
...|..-|.|+.
T Consensus 650 ~~~~~~~~~a~~ 661 (894)
T COG2909 650 NGQYHVDYLAAA 661 (894)
T ss_pred CCCCCchHHHHH
Confidence 444666666654
No 280
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.27 E-value=0.015 Score=52.69 Aligned_cols=81 Identities=20% Similarity=0.152 Sum_probs=59.8
Q ss_pred EEEEE-cCeEEEeeehhhhcCCHHHHHhhcCCCccCCC-CeeEecCCCCCHHHHHHHHHHhccCCCCC------------
Q 003035 220 VTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFVESKR-KTIDFSHDGVSVEGLRAVEVYTRTSRVDL------------ 285 (855)
Q Consensus 220 V~f~v-~~~~~~aHr~vLaa~S~~F~~mf~~~~~E~~~-~~I~l~~~~is~~~~~~ll~y~YTg~l~~------------ 285 (855)
|+++. +|..|.+.+.+. ..|..++.|+.+...+... ..|.+ ++|+..+|+.+++|++--.-..
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl--~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPL--PNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccC--CCcCHHHHHHHHHHHHHcccCCCCccccccccHH
Confidence 66665 788999999876 6999999999764333222 58999 9999999999999996332110
Q ss_pred ------CCHHHHHHHHHHhchhCh
Q 003035 286 ------FCPGIVLELLSFANRFCC 303 (855)
Q Consensus 286 ------~~~~~~~~ll~~A~~~~~ 303 (855)
++.+.+.+|+.+|+.+++
T Consensus 81 D~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 445567778888777654
No 281
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=96.19 E-value=0.017 Score=57.67 Aligned_cols=90 Identities=17% Similarity=0.168 Sum_probs=75.7
Q ss_pred EEEEEcCeEEEeeehhhhcCCH--HHHHhhcCC--C-ccCCCCeeEecCCCCCHHHHHHHHHHhccCCCCCCCHHHHHHH
Q 003035 220 VTFCVRDKEISFVRNKIASLSS--PFKAMLYGG--F-VESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLEL 294 (855)
Q Consensus 220 V~f~v~~~~~~aHr~vLaa~S~--~F~~mf~~~--~-~E~~~~~I~l~~~~is~~~~~~ll~y~YTg~l~~~~~~~~~~l 294 (855)
|.+.|||+.|..-+--|..|-| -.-+||.+. + .|+.+.-+-| |-+|.-|+.+|+|+..|.+...+.-+++++
T Consensus 11 vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lI---DRsp~yFepIlNyLr~Gq~~~~s~i~~lgv 87 (302)
T KOG1665|consen 11 VRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLI---DRSPKYFEPILNYLRDGQIPSLSDIDCLGV 87 (302)
T ss_pred heeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEE---ccCchhhHHHHHHHhcCceeecCCccHHHH
Confidence 9999999999988888887765 567888753 2 3344445655 779999999999999999988888899999
Q ss_pred HHHhchhChHHHHHHHHH
Q 003035 295 LSFANRFCCEEMKSACDA 312 (855)
Q Consensus 295 l~~A~~~~~~~Lk~~C~~ 312 (855)
|..|++|++-.|+..-++
T Consensus 88 LeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 88 LEEARFFQILSLKDHLED 105 (302)
T ss_pred HHHhhHHhhHhHHhHHhh
Confidence 999999999999988777
No 282
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.18 E-value=0.0092 Score=41.72 Aligned_cols=32 Identities=31% Similarity=0.317 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC
Q 003035 675 ERLVYEGWILYDTGHREEALSRAEKSISIERT 706 (855)
Q Consensus 675 ~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~ 706 (855)
++++.+|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46777888888888888888888888887774
No 283
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.17 E-value=3.4 Score=47.27 Aligned_cols=422 Identities=11% Similarity=0.010 Sum_probs=225.8
Q ss_pred hchhhHHHHHHHHHhhcccccchhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHh-cchhhh
Q 003035 376 VGHASFLLYYFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADA-GHIYSL 454 (855)
Q Consensus 376 ~~~~~f~l~~~La~~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~-~~~~a~ 454 (855)
-.|....-++.|-+-+..+ + .++..+.+|+++...|..+ .+|..-..-.+..++|+.-++.|.+.|.. -+...+
T Consensus 15 ~nP~di~sw~~lire~qt~-~-~~~~R~~YEq~~~~FP~s~---r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW 89 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-P-IDKVRETYEQLVNVFPSSP---RAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLW 89 (656)
T ss_pred cCCccHHHHHHHHHHHccC-C-HHHHHHHHHHHhccCCCCc---HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHH
Confidence 3444444466666666555 4 8899999999999877764 36666666778889999999999988742 122111
Q ss_pred -hhHHHHHHHhCChHHHH----HHHHhHHH---cCCCchHHHHHHhhccCcchHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 003035 455 -AGLARAKYKVGQQYSAY----KLINSIIS---EHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKM 526 (855)
Q Consensus 455 -~~la~~~~~~g~~~~A~----~~l~~~i~---~~p~~~~~y~~~~~~~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~ 526 (855)
..|..+-...|+...+. +.++-++. .++....+|..-..+..+-+|. .-+.
T Consensus 90 ~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~---------------------gk~e 148 (656)
T KOG1914|consen 90 KLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAV---------------------GKYE 148 (656)
T ss_pred HHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHccccc---------------------ccHH
Confidence 11222222333333322 22222222 2333333333322221111111 1334
Q ss_pred HhCCHHHHHHHHHHHHccCC-CHhHH--------------HHHHHHHHHcCCHHHHHHHHHHHHhcCCc----hhhhhcc
Q 003035 527 EEGQIRAAISEIDRIIVFKL-SVDCL--------------ELRAWLFIAADDYESALRDTLALLALESN----YMMFHGR 587 (855)
Q Consensus 527 ~~~~~~~A~~~~~k~l~~~p-~~~~l--------------~lra~~y~~~gd~~~A~~~~~~aL~~~P~----~~~~~~~ 587 (855)
++.+.+.-...|++++.-.- +.+-+ ..+-.+-....+|..|.+.+++...+-.. .+..-..
T Consensus 149 e~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~ 228 (656)
T KOG1914|consen 149 ENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPK 228 (656)
T ss_pred HHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCC
Confidence 45566666777777775221 11111 11222344445566666655555432111 1100000
Q ss_pred cchhHHHHHHHHHhhccChhhhHHHHh--hhccccc--ccch-----HHHHHHHHHcCCCChHHHHHHHHHHHHcCC---
Q 003035 588 VSGDHLVKLLNHHVRSWSPADCWIKLY--DRWSSVD--DIGS-----LAVINQMLINDPGKSFLRFRQSLLLLRLNC--- 655 (855)
Q Consensus 588 ~~~~~l~~ll~~~~~~~~~a~~~~~~~--~~~~~~~--d~~a-----l~~~~~~l~~~p~~~~~~~~~a~~l~~~g~--- 655 (855)
..... .. +-+.|.... ++....+ +..- .-+.++.+..-+..+.+|+..+..+...++
T Consensus 229 ~T~~e-----~~------qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~ 297 (656)
T KOG1914|consen 229 GTKDE-----IQ------QVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLT 297 (656)
T ss_pred CChHH-----HH------HHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHH
Confidence 00010 00 111222211 1111111 0001 123566777777888888877776666555
Q ss_pred -----------HHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHC---CCHHHHHHHHHHHHhccCCh--HHHHHHHHHHH
Q 003035 656 -----------QKAAMRCLRLARNHSS-SEHERLVYEGWILYDT---GHREEALSRAEKSISIERTF--EAFFLKAYILA 718 (855)
Q Consensus 656 -----------~~~A~~~l~~al~~~p-~~~~~~~~lg~~~~~~---g~~~eAl~~~~kal~~~p~~--~a~~~lg~~~~ 718 (855)
.+++...|+.+++--- .+...++.++..-... ++++.-..++++.+.+.... -+|..+-....
T Consensus 298 ~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~ir 377 (656)
T KOG1914|consen 298 EKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIR 377 (656)
T ss_pred HhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHH
Confidence 6778888888887533 2333444444433222 23677777888887765433 33333333333
Q ss_pred HCCCCchhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCC
Q 003035 719 DTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSI-YVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNE 795 (855)
Q Consensus 719 ~~g~~~~A~~~~~~lle~al~~~~~~~~p~~a~~~LG~~-y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~ 795 (855)
+..-...|... |.+|-+. ...+.+++..-|.+ |.-.++..-|...|+-.|+.. .+.--..+...+...|+
T Consensus 378 R~eGlkaaR~i----F~kaR~~---~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNd 450 (656)
T KOG1914|consen 378 RAEGLKAARKI----FKKARED---KRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLND 450 (656)
T ss_pred HhhhHHHHHHH----HHHHhhc---cCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCc
Confidence 33334455555 8888621 11222555544444 455789999999999999988 55555566777788899
Q ss_pred HHHHHHHHHHHHHH--ccCC-HHHHHHHhh----cCCHHHHHHHHHHHHhcCC
Q 003035 796 LKAAYDEMTKLLEK--AQYS-ASAFEKRSE----YSDREMAKNDLNMATQLDP 841 (855)
Q Consensus 796 ~~~A~~~~~kal~~--~p~~-~~a~~~lg~----~g~~eeA~~~~~kAl~l~P 841 (855)
-..|...|++++.. .|+- ...|...-+ .|+...+++.=++-...-|
T Consensus 451 d~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 451 DNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred chhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 99999999999987 3332 245554444 8888888877666554444
No 284
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.13 E-value=5.1 Score=48.99 Aligned_cols=118 Identities=19% Similarity=0.151 Sum_probs=79.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC-------------------------CcHHHHHHHHHHHHHCCCHHHHHHHH
Q 003035 643 RFRQSLLLLRLNCQKAAMRCLRLARNHSS-------------------------SEHERLVYEGWILYDTGHREEALSRA 697 (855)
Q Consensus 643 ~~~~a~~l~~~g~~~~A~~~l~~al~~~p-------------------------~~~~~~~~lg~~~~~~g~~~eAl~~~ 697 (855)
+-+++..+..+|+|..|...-++|-.... -.++-+-.+-..|.+.|.++|-+..+
T Consensus 1223 ~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~ 1302 (1666)
T KOG0985|consen 1223 FAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLL 1302 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHH
Confidence 55677778888899988888777643211 01222344566788899999999999
Q ss_pred HHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCH-------HHHHHHHHHHHHHcCCHHHH
Q 003035 698 EKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK-------GQALNNLGSIYVECGKLDQA 767 (855)
Q Consensus 698 ~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p-------~~a~~~LG~~y~~~g~~~~A 767 (855)
+.++-+.... ..+..+|..|.+- ++++-.+. +++|-.-+ .+-+ ...|..+-.+|.+-..||.|
T Consensus 1303 Ea~LGLERAHMgmfTELaiLYsky-kp~km~EH-l~LFwsRv-----NipKviRA~eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1303 EAGLGLERAHMGMFTELAILYSKY-KPEKMMEH-LKLFWSRV-----NIPKVIRAAEQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred HhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHH-HHHHHHhc-----chHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 9999999888 7778888887664 35555554 22232222 1111 06788888888877777766
No 285
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=96.11 E-value=0.015 Score=52.33 Aligned_cols=40 Identities=10% Similarity=0.231 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhcCChhHHhh
Q 003035 324 ALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKI 363 (855)
Q Consensus 324 ~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~v~~~~~f~~l 363 (855)
|+.++.+|..|++..|.+.|.+||..||.+++++++|.+|
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L 40 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLEL 40 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcC
Confidence 7899999999999999999999999999999999988764
No 286
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.05 E-value=5.3 Score=48.46 Aligned_cols=228 Identities=14% Similarity=-0.027 Sum_probs=135.7
Q ss_pred HHHHHHhCCHHHHHHHHHHHHccCCC----------HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchh
Q 003035 522 AVAKMEEGQIRAAISEIDRIIVFKLS----------VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGD 591 (855)
Q Consensus 522 a~~~~~~~~~~~A~~~~~k~l~~~p~----------~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~ 591 (855)
|-......++++|...+.++..+-+. .+...++|.+....|+.++|++..+.++..-|......
T Consensus 422 aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~------ 495 (894)
T COG2909 422 AWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRS------ 495 (894)
T ss_pred HHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchh------
Confidence 44666788999998888888764432 13445778899999999999999998887666532110
Q ss_pred HHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Q 003035 592 HLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH-- 669 (855)
Q Consensus 592 ~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~-- 669 (855)
....+...|.+.+-.|++++|..+...+.+.
T Consensus 496 -----------------------------------------------r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~ 528 (894)
T COG2909 496 -----------------------------------------------RIVALSVLGEAAHIRGELTQALALMQQAEQMAR 528 (894)
T ss_pred -----------------------------------------------hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHH
Confidence 1112233455666778888888888777765
Q ss_pred --CCCcH--HHHHHHHHHHHHCCC--HHHHHHHHHHHH----hccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHh
Q 003035 670 --SSSEH--ERLVYEGWILYDTGH--REEALSRAEKSI----SIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEAL 738 (855)
Q Consensus 670 --~p~~~--~~~~~lg~~~~~~g~--~~eAl~~~~kal----~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al 738 (855)
+-..- .+....+.++..+|+ +.+....|...- ...|-. ......+.++...-+.+.+... ....+
T Consensus 529 ~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~e----ar~~~ 604 (894)
T COG2909 529 QHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAE----ARLGI 604 (894)
T ss_pred HcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHH----hhhcc
Confidence 22222 233556778888883 333333332221 222332 2222333333333336666655 44444
Q ss_pred cCCCCCC-CHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-------cHHH--HHHHHHHHHHcCCHHHHHHHHHH
Q 003035 739 RCPSDGL-RKG---QALNNLGSIYVECGKLDQAENCYINALDIK-------HTRA--HQGLARVYYLKNELKAAYDEMTK 805 (855)
Q Consensus 739 ~~~~~~~-~p~---~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~-------~~~a--~~~lg~~~~~~g~~~~A~~~~~k 805 (855)
+...... .|- -++.+|+.++...|++++|..........- +..+ +.-.......+||..+|..+..+
T Consensus 605 ~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 605 EVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 2222111 111 444689999999999999999888877654 1222 22222334456899999888877
Q ss_pred H
Q 003035 806 L 806 (855)
Q Consensus 806 a 806 (855)
.
T Consensus 685 s 685 (894)
T COG2909 685 S 685 (894)
T ss_pred c
Confidence 3
No 287
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=95.98 E-value=0.011 Score=63.25 Aligned_cols=91 Identities=16% Similarity=0.176 Sum_probs=74.1
Q ss_pred eEEEeeehhhhcCCHHHHHhhcCCCccCC-CCeeEecCCCCCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHhchhChHH
Q 003035 227 KEISFVRNKIASLSSPFKAMLYGGFVESK-RKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLELLSFANRFCCEE 305 (855)
Q Consensus 227 ~~~~aHr~vLaa~S~~F~~mf~~~~~E~~-~~~I~l~~~~is~~~~~~ll~y~YTg~l~~~~~~~~~~ll~~A~~~~~~~ 305 (855)
+.|.|.+-+|...-.||+..+.....++. ..+|+|+ -.-+..+|.=++.|+....-. ++++||..+|.=|++++|+.
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idis-VhCDv~iF~WLm~yv~~~~p~-l~~~NvvsIliSS~FL~M~~ 91 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDIS-VHCDVHIFEWLMRYVKGEPPS-LTPSNVVSILISSEFLQMES 91 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceE-EecChhHHHHHHHHhhcCCCc-CCcCcEEEeEehhhhhccHH
Confidence 67999999999999999999965322222 2356664 367889999999999986555 99999999999999999999
Q ss_pred HHHHHHHHHHhhcC
Q 003035 306 MKSACDAHLASLVG 319 (855)
Q Consensus 306 Lk~~C~~~l~~~l~ 319 (855)
|.+.|-.|+.+.++
T Consensus 92 Lve~cl~y~~~~~~ 105 (317)
T PF11822_consen 92 LVEECLQYCHDHMS 105 (317)
T ss_pred HHHHHHHHHHHhHH
Confidence 99999888876654
No 288
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.89 E-value=0.0089 Score=63.82 Aligned_cols=93 Identities=10% Similarity=0.064 Sum_probs=83.3
Q ss_pred HHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHH
Q 003035 682 WILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIY 758 (855)
Q Consensus 682 ~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y 758 (855)
.-.+..|.+++|++.|..+|+++|.. ..|-..|.++...++...|+.. +..|+ .++|+ .-|-..|...
T Consensus 122 ~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD----~d~A~-----ein~Dsa~~ykfrg~A~ 192 (377)
T KOG1308|consen 122 SEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRD----CDFAI-----EINPDSAKGYKFRGYAE 192 (377)
T ss_pred HHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhh----hhhhh-----ccCcccccccchhhHHH
Confidence 34457888999999999999999999 9999999999999999999999 99999 88888 6777889999
Q ss_pred HHcCCHHHHHHHHHHHHhcc-cHHHH
Q 003035 759 VECGKLDQAENCYINALDIK-HTRAH 783 (855)
Q Consensus 759 ~~~g~~~~A~~~~~kAL~~~-~~~a~ 783 (855)
..+|++.+|...+..|.+++ +..+-
T Consensus 193 rllg~~e~aa~dl~~a~kld~dE~~~ 218 (377)
T KOG1308|consen 193 RLLGNWEEAAHDLALACKLDYDEANS 218 (377)
T ss_pred HHhhchHHHHHHHHHHHhccccHHHH
Confidence 99999999999999999998 54443
No 289
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.89 E-value=3.2 Score=44.67 Aligned_cols=73 Identities=12% Similarity=-0.123 Sum_probs=37.7
Q ss_pred HHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHH-HHHCCCHHHHHHHHHHHHhc
Q 003035 631 QMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS-SEHERLVYEGWI-LYDTGHREEALSRAEKSISI 703 (855)
Q Consensus 631 ~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p-~~~~~~~~lg~~-~~~~g~~~eAl~~~~kal~~ 703 (855)
.+-...|+.+.+++..-.++.+.++.+++.+.+.+++..-+ .....-..+..+ .........|...+.+.+..
T Consensus 112 ~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~ 186 (278)
T PF08631_consen 112 LLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLN 186 (278)
T ss_pred HHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence 33344566666664444455556777777777777776543 112121222222 12223345666666666554
No 290
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.88 E-value=0.013 Score=41.90 Aligned_cols=26 Identities=46% Similarity=0.698 Sum_probs=13.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003035 751 LNNLGSIYVECGKLDQAENCYINALD 776 (855)
Q Consensus 751 ~~~LG~~y~~~g~~~~A~~~~~kAL~ 776 (855)
|.+||.+|...|++++|+++|+++|.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555555555555555555443
No 291
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=95.88 E-value=0.03 Score=61.36 Aligned_cols=90 Identities=18% Similarity=0.145 Sum_probs=71.4
Q ss_pred EEEEEcCeEEEeeehhhhcCC--HHHHHhhcCCCccCCCC--eeEecCCCCCHHHHHHHHHHhccCCCCCCCHHHHHHHH
Q 003035 220 VTFCVRDKEISFVRNKIASLS--SPFKAMLYGGFVESKRK--TIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLELL 295 (855)
Q Consensus 220 V~f~v~~~~~~aHr~vLaa~S--~~F~~mf~~~~~E~~~~--~I~l~~~~is~~~~~~ll~y~YTg~l~~~~~~~~~~ll 295 (855)
|.|.|||+.|...+.-|+... .+|-++|++.|.-...+ .|-| |-+|+.|..+|+|+.||.++ ++.-....++
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI---DRDPdlFaviLn~LRTg~L~-~~g~~~~~ll 88 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI---DRDPDLFAVILNLLRTGDLD-ASGVFPERLL 88 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe---cCCchHHHHHHHHHhcCCCC-CccCchhhhh
Confidence 999999999999999987766 58999998877654443 2555 77999999999999999999 6554444444
Q ss_pred H-HhchhChHHHHH---HHHHH
Q 003035 296 S-FANRFCCEEMKS---ACDAH 313 (855)
Q Consensus 296 ~-~A~~~~~~~Lk~---~C~~~ 313 (855)
. =|.+|+++.|.+ .|+.-
T Consensus 89 hdEA~fYGl~~llrrl~~~~~~ 110 (465)
T KOG2714|consen 89 HDEAMFYGLTPLLRRLTLCEEL 110 (465)
T ss_pred hhhhhhcCcHHHHHHhhcCccc
Confidence 4 899999998876 55544
No 292
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.77 E-value=0.62 Score=45.44 Aligned_cols=144 Identities=16% Similarity=0.107 Sum_probs=108.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-----HHHHH
Q 003035 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH--ERLVYEGWILYDTGHREEALSRAEKSISIERTF-----EAFFL 712 (855)
Q Consensus 640 ~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~--~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-----~a~~~ 712 (855)
+.-.|..++-+.+.|+.++|+..|...-+..-... -+.+..|.+....|+...|+..|.++-.-.|.- .+...
T Consensus 58 sgd~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 58 SGDAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred chHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 33456677778899999999999999877665443 445778999999999999999999988765432 56677
Q ss_pred HHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-cHHHHHHHHHH
Q 003035 713 KAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK-HTRAHQGLARV 789 (855)
Q Consensus 713 lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~-~~~a~~~lg~~ 789 (855)
-|+.+.+.|.|++-... .+..- .+-+|- .+.-.||..-.+.|++.+|.+.|.....-. -++...+.+.+
T Consensus 138 aa~lLvD~gsy~dV~sr----vepLa----~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprnirqRAq~ 209 (221)
T COG4649 138 AAYLLVDNGSYDDVSSR----VEPLA----GDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNIRQRAQI 209 (221)
T ss_pred HHHHHhccccHHHHHHH----hhhcc----CCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHHHHHHHH
Confidence 78999999999987777 44332 122333 677778989999999999999998887744 55555555555
Q ss_pred HH
Q 003035 790 YY 791 (855)
Q Consensus 790 ~~ 791 (855)
..
T Consensus 210 ml 211 (221)
T COG4649 210 ML 211 (221)
T ss_pred HH
Confidence 43
No 293
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.13 Score=53.31 Aligned_cols=219 Identities=15% Similarity=0.122 Sum_probs=158.2
Q ss_pred hHHHHHHHHHcCCCChHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHH-HHHHHHHHHHh
Q 003035 625 SLAVINQMLINDPGKSFLRFRQSLLLL-RLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHRE-EALSRAEKSIS 702 (855)
Q Consensus 625 al~~~~~~l~~~p~~~~~~~~~a~~l~-~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~-eAl~~~~kal~ 702 (855)
++.....++..+|.+--++...-.++. -..+..+-++++..+++-+|++..+|..+-.+....|+.. .-+...++++.
T Consensus 62 Al~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~ 141 (318)
T KOG0530|consen 62 ALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLD 141 (318)
T ss_pred HHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHh
Confidence 577788999999998776644444443 3456888899999999999999999999999999999988 88999999999
Q ss_pred ccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH-cC-----CHHHHHHHHHHHH
Q 003035 703 IERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVE-CG-----KLDQAENCYINAL 775 (855)
Q Consensus 703 ~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~~a~~~LG~~y~~-~g-----~~~~A~~~~~kAL 775 (855)
.+.++ .+|...-.+...-+.++.-+.++-++++.-+ ..+.+|+..=.+... .| ..+.-+.+..+.|
T Consensus 142 ~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di-------~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I 214 (318)
T KOG0530|consen 142 DDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDI-------RNNSAWNQRYFVITNTKGVISKAELERELNYTKDKI 214 (318)
T ss_pred ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhh-------hccchhheeeEEEEeccCCccHHHHHHHHHHHHHHH
Confidence 99988 9999999999999999999999555555444 222566654333222 22 2344566677777
Q ss_pred hcc--cHHHHHHHHHHHHH-cC--CHHHHHHHHHHHH-HHccCCHHHHHHHhh----------cCCHH---HHHHHHHH-
Q 003035 776 DIK--HTRAHQGLARVYYL-KN--ELKAAYDEMTKLL-EKAQYSASAFEKRSE----------YSDRE---MAKNDLNM- 835 (855)
Q Consensus 776 ~~~--~~~a~~~lg~~~~~-~g--~~~~A~~~~~kal-~~~p~~~~a~~~lg~----------~g~~e---eA~~~~~k- 835 (855)
.+. +..++..|.-++.. .| ...+-.......+ ......|..+-.+.. .+.-+ +|.+.|+.
T Consensus 215 ~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~~e~~l~~~~~~~~~a~~a~~ly~~L 294 (318)
T KOG0530|consen 215 LLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLYAEDALAYKSSAEELARKAVKLYEDL 294 (318)
T ss_pred HhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 777 88899999999888 44 2344444444444 333455777777777 23334 56666654
Q ss_pred HHhcCCCCcccchhh
Q 003035 836 ATQLDPLRTYPYRYR 850 (855)
Q Consensus 836 Al~l~P~~~~~~~~~ 850 (855)
|.+.||-+..-|+++
T Consensus 295 a~~~DpiR~nyW~~~ 309 (318)
T KOG0530|consen 295 AIKVDPIRKNYWRHK 309 (318)
T ss_pred hhccCcHHHHHHHHH
Confidence 558888777666665
No 294
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.67 E-value=0.16 Score=48.71 Aligned_cols=89 Identities=20% Similarity=0.144 Sum_probs=66.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCc----------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q 003035 646 QSLLLLRLNCQKAAMRCLRLARNHSSSE----------------------HERLVYEGWILYDTGHREEALSRAEKSISI 703 (855)
Q Consensus 646 ~a~~l~~~g~~~~A~~~l~~al~~~p~~----------------------~~~~~~lg~~~~~~g~~~eAl~~~~kal~~ 703 (855)
.|......++.+.++..+++++.+...+ ..+...++..+...|++++|+..+++++..
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~ 91 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL 91 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 3445566777888888888888764211 123355677888999999999999999999
Q ss_pred cCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHh
Q 003035 704 ERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEAL 738 (855)
Q Consensus 704 ~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al 738 (855)
+|.+ .++..+-.+|...|+..+|+.. |++..
T Consensus 92 dP~~E~~~~~lm~~~~~~g~~~~A~~~----Y~~~~ 123 (146)
T PF03704_consen 92 DPYDEEAYRLLMRALAAQGRRAEALRV----YERYR 123 (146)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHH----HHHHH
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHH----HHHHH
Confidence 9999 9999999999999999999998 77664
No 295
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.66 E-value=0.21 Score=47.95 Aligned_cols=111 Identities=22% Similarity=0.195 Sum_probs=71.3
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHC--CCCchhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 003035 679 YEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADT--NLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGS 756 (855)
Q Consensus 679 ~lg~~~~~~g~~~eAl~~~~kal~~~p~~~a~~~lg~~~~~~--g~~~~A~~~~~~lle~al~~~~~~~~p~~a~~~LG~ 756 (855)
..|......|+.+.++..+++++.+.... .+... ..+-..... .++... -.+...++.
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~--------~l~~~~~~~W~~~~r~---~l~~~~---------~~~~~~l~~ 70 (146)
T PF03704_consen 11 REARAAARAGDPEEAIELLEEALALYRGD--------FLPDLDDEEWVEPERE---RLRELY---------LDALERLAE 70 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHTT--SS--------TTGGGTTSTTHHHHHH---HHHHHH---------HHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhCCC--------CCCCCCccHHHHHHHH---HHHHHH---------HHHHHHHHH
Confidence 34555566777788888888887775533 00010 111111111 011111 156677888
Q ss_pred HHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 003035 757 IYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEK 809 (855)
Q Consensus 757 ~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~ 809 (855)
.+...|++++|+..+++++.++ +..++..+-.+|...|+..+|++.|++....
T Consensus 71 ~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 71 ALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 8889999999999999999999 8889999999999999999999998887653
No 296
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.057 Score=57.58 Aligned_cols=92 Identities=15% Similarity=0.157 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh
Q 003035 749 QALNNLGSIYVECGKLDQAENCYINALDIK------HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE 822 (855)
Q Consensus 749 ~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~------~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~ 822 (855)
+-|-.-|.-|++.++|..|+.+|.++|+.. +...|.|.+-+..-.|+|..|+....+++.++|.+..+|+.=+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 344456888999999999999999999876 56678899999999999999999999999999999988876665
Q ss_pred ----cCCHHHHHHHHHHHHhcC
Q 003035 823 ----YSDREMAKNDLNMATQLD 840 (855)
Q Consensus 823 ----~g~~eeA~~~~~kAl~l~ 840 (855)
+.++++|..+.+..++++
T Consensus 162 c~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred HHHHHHHHHHHHHHHhhhhhhh
Confidence 667666666666555544
No 297
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.61 E-value=0.022 Score=39.32 Aligned_cols=33 Identities=27% Similarity=0.378 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCC
Q 003035 781 RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS 813 (855)
Q Consensus 781 ~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~ 813 (855)
.+++++|+++...|++++|++.|+++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 368899999999999999999999999998874
No 298
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.55 E-value=4.3 Score=43.68 Aligned_cols=125 Identities=12% Similarity=0.092 Sum_probs=75.0
Q ss_pred hcccccchhhHHHHHHHHhhc----hhhHH-HHHHHHHHhhhhHhhhh-cHHHHHHHHHHHHHh----cch---------
Q 003035 391 AMEKDRVSNTTVMLLERLGEC----STERW-QRMLALHQLGCVMFERE-EYKDACYYFEAAADA----GHI--------- 451 (855)
Q Consensus 391 ~~~~~~~~~~a~~~le~~~~~----~~~~~-~~~~a~~~LG~~~l~~g-~~~eA~~~~~~Al~~----~~~--------- 451 (855)
+..+|+ .+.|..++.|+-.. +|+.. .-+..+++.|.-.++++ ++++|..++++|.++ ...
T Consensus 3 A~~~~~-~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 3 AWKQGD-LDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred chhhCC-HHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 345566 78888888887553 34433 23456789999999999 999999999999876 110
Q ss_pred ---hhhhhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHhhccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 003035 452 ---YSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEE 528 (855)
Q Consensus 452 ---~a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~~~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~ 528 (855)
..+..++.+|+..+..+.. ++|...++.+...-|+.+..+...-.++...
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~---------------------------~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~ 134 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESV---------------------------EKALNALRLLESEYGNKPEVFLLKLEILLKS 134 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHH---------------------------HHHHHHHHHHHHhCCCCcHHHHHHHHHHhcc
Confidence 1233444555444433211 2233334444444555555554444444446
Q ss_pred CCHHHHHHHHHHHHc
Q 003035 529 GQIRAAISEIDRIIV 543 (855)
Q Consensus 529 ~~~~~A~~~~~k~l~ 543 (855)
++.+++.+.+.+++.
T Consensus 135 ~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 135 FDEEEYEEILMRMIR 149 (278)
T ss_pred CChhHHHHHHHHHHH
Confidence 677777777777765
No 299
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.45 E-value=0.043 Score=57.64 Aligned_cols=83 Identities=20% Similarity=0.093 Sum_probs=71.5
Q ss_pred HHcCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-H
Q 003035 633 LINDPGKS---FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-E 708 (855)
Q Consensus 633 l~~~p~~~---~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~ 708 (855)
.+.+|.+. .+-.+.|.-..+.|+.++|+..|+.|++++|++++++...|......++.-+|-.+|-+|+.+.|.+ +
T Consensus 106 te~~pa~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse 185 (472)
T KOG3824|consen 106 TENDPAKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE 185 (472)
T ss_pred cccCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence 35566543 3445666677889999999999999999999999999999999999999999999999999999999 8
Q ss_pred HHHHHHH
Q 003035 709 AFFLKAY 715 (855)
Q Consensus 709 a~~~lg~ 715 (855)
++.+.+.
T Consensus 186 ALvnR~R 192 (472)
T KOG3824|consen 186 ALVNRAR 192 (472)
T ss_pred HHhhhhc
Confidence 8877554
No 300
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.099 Score=50.97 Aligned_cols=106 Identities=12% Similarity=0.126 Sum_probs=77.6
Q ss_pred EEEEE-cCeEEEeeehhhhcCCHHHHHhhcCCCccCCCCeeEecCCCCCHHHHHHHHHHhccCCCC--------------
Q 003035 220 VTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVD-------------- 284 (855)
Q Consensus 220 V~f~v-~~~~~~aHr~vLaa~S~~F~~mf~~~~~E~~~~~I~l~~~~is~~~~~~ll~y~YTg~l~-------------- 284 (855)
+.+.. +|+.|.+-..+. ..|.-.++++...-.......|.| +.|+..+|..|++|++--+-+
T Consensus 7 ikL~SsDG~~f~ve~~~a-~~s~~i~~~~~~~~~~~~~~~IPl--~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~ 83 (162)
T KOG1724|consen 7 IKLESSDGEIFEVEEEVA-RQSQTISAHMIEDGCADENDPIPL--PNVTSKILKKVIEWCKKHKDDDPANPEDKELPEET 83 (162)
T ss_pred EEEEccCCceeehhHHHH-HHhHHHHHHHHHcCCCccCCcccc--CccCHHHHHHHHHHHHHcccccccccccccccccC
Confidence 44444 677777766654 778888888864322222257999 889999999999999863321
Q ss_pred ---C-------CCHHHHHHHHHHhchhChHHHHHHHHHHHHhhcC--ChhhHHHHH
Q 003035 285 ---L-------FCPGIVLELLSFANRFCCEEMKSACDAHLASLVG--DIEDALILI 328 (855)
Q Consensus 285 ---~-------~~~~~~~~ll~~A~~~~~~~Lk~~C~~~l~~~l~--~~~n~~~~~ 328 (855)
. ++.+++.+|+.+|+.+.+.+|...|++.+..++. +++....++
T Consensus 84 ~i~~WD~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEir~~f 139 (162)
T KOG1724|consen 84 DIPEWDAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIREIF 139 (162)
T ss_pred CccHHHHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHHHHc
Confidence 0 3456899999999999999999999999998885 255554443
No 301
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.36 E-value=0.02 Score=39.46 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC
Q 003035 675 ERLVYEGWILYDTGHREEALSRAEKSISIERT 706 (855)
Q Consensus 675 ~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~ 706 (855)
++++.+|.++...|++++|+..|++.++..|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 45677777777777777777777777777775
No 302
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.03 E-value=0.21 Score=43.87 Aligned_cols=64 Identities=17% Similarity=0.082 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh---HHHHHHHHHHHHCCCC
Q 003035 660 MRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF---EAFFLKAYILADTNLD 723 (855)
Q Consensus 660 ~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~---~a~~~lg~~~~~~g~~ 723 (855)
+..+++.++.+|++.++.+.+|..+...|++++|+..+-++++.++++ .+.-.+-.++...|.-
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 445666666677777777777777777777777777777766666654 3434444444444443
No 303
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=95.02 E-value=0.11 Score=42.21 Aligned_cols=55 Identities=24% Similarity=0.196 Sum_probs=44.2
Q ss_pred EEEEE-cCeEEEeeehhhhcCCHHHHHhhcCCCccCCCCeeEecCCCCCHHHHHHHHHHhc
Q 003035 220 VTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTR 279 (855)
Q Consensus 220 V~f~v-~~~~~~aHr~vLaa~S~~F~~mf~~~~~E~~~~~I~l~~~~is~~~~~~ll~y~Y 279 (855)
|+|+. +|+.|.+.+.+. ..|..++.||.+...+.. .|.+ ++|+..+++.+++|++
T Consensus 3 v~L~SsDg~~f~V~~~~a-~~S~~i~~ml~~~~~~~~--~Ipl--~~v~~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAA-KQSKTIKNMLEDLGDEDE--PIPL--PNVSSRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTSEEEEEEHHHH-TTSHHHHHHHHCTCCCGT--EEEE--TTS-HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHH-HHhHHHHHHHhhhccccc--cccc--CccCHHHHHHHHHHHH
Confidence 55665 788999988776 699999999976444333 8999 9999999999999986
No 304
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.98 E-value=0.053 Score=38.66 Aligned_cols=29 Identities=24% Similarity=0.343 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 003035 782 AHQGLARVYYLKNELKAAYDEMTKLLEKA 810 (855)
Q Consensus 782 a~~~lg~~~~~~g~~~~A~~~~~kal~~~ 810 (855)
++.++|.+|..+|++++|+++|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999999966554
No 305
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=94.98 E-value=0.79 Score=50.52 Aligned_cols=148 Identities=13% Similarity=0.010 Sum_probs=100.8
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHH
Q 003035 627 AVINQMLINDPGKSFLRFRQSLLLLRLNC------------QKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEAL 694 (855)
Q Consensus 627 ~~~~~~l~~~p~~~~~~~~~a~~l~~~g~------------~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl 694 (855)
..+++.+..+|.+..++..+....-..-. .+.-+..|++|++.+|++...+..+-.+.....+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 34567777888888887776654333211 345677899999999999999888888888888999999
Q ss_pred HHHHHHHhccCCh-HHHHHHH-HHHHHCC--CCchhHHHHHHHHHHHhcCC----CCC-----CCHH------HHHHHHH
Q 003035 695 SRAEKSISIERTF-EAFFLKA-YILADTN--LDPESSTYVIQLLEEALRCP----SDG-----LRKG------QALNNLG 755 (855)
Q Consensus 695 ~~~~kal~~~p~~-~a~~~lg-~~~~~~g--~~~~A~~~~~~lle~al~~~----~~~-----~~p~------~a~~~LG 755 (855)
+..++++..+|++ ..|..+- ....+.+ .+++.... |.++++.. ... ..+. .++..+.
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~----y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~ 161 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDV----YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLC 161 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHH----HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHH
Confidence 9999999999987 5555433 2222222 34455555 55554221 000 0011 5666667
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcc
Q 003035 756 SIYVECGKLDQAENCYINALDIK 778 (855)
Q Consensus 756 ~~y~~~g~~~~A~~~~~kAL~~~ 778 (855)
....+.|-.+.|+..++-.++.+
T Consensus 162 ~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 162 RFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHCCchHHHHHHHHHHHHHH
Confidence 77778888888888888888877
No 306
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.94 E-value=0.65 Score=51.93 Aligned_cols=165 Identities=13% Similarity=0.028 Sum_probs=109.7
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH-------HHHHHHHHCCCHHHHHHHHHHH
Q 003035 628 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLV-------YEGWILYDTGHREEALSRAEKS 700 (855)
Q Consensus 628 ~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~-------~lg~~~~~~g~~~eAl~~~~ka 700 (855)
.+-..+..+|-....+..++.++..+|+.+.|.+.+++|+=......-..+ .-|.+...-.+
T Consensus 28 ~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~----------- 96 (360)
T PF04910_consen 28 ALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRR----------- 96 (360)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCcc-----------
Confidence 344556777777777777777777777777777777776543211110011 00111110000
Q ss_pred HhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003035 701 ISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG----QALNNLGSIYVECGKLDQAENCYINAL 775 (855)
Q Consensus 701 l~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~----~a~~~LG~~y~~~g~~~~A~~~~~kAL 775 (855)
..|..+ .+.+.....+.+.|-+..|.+. .+-.+ .++|. .+...+-....+.++++-=++.++...
T Consensus 97 -~eNR~fflal~r~i~~L~~RG~~rTAlE~----~KlLl-----sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 97 -PENRQFFLALFRYIQSLGRRGCWRTALEW----CKLLL-----SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred -ccchHHHHHHHHHHHHHHhcCcHHHHHHH----HHHHH-----hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 002223 6777888899999999999999 77777 55555 677777777788889988888888766
Q ss_pred hcc-------cHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHHHccCC
Q 003035 776 DIK-------HTRAHQGLARVYYLKNEL---------------KAAYDEMTKLLEKAQYS 813 (855)
Q Consensus 776 ~~~-------~~~a~~~lg~~~~~~g~~---------------~~A~~~~~kal~~~p~~ 813 (855)
... -|...+..+.+++..++. ++|.+.+.+|+...|.-
T Consensus 167 ~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 167 AKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred hhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 521 235677888888888887 89999999999876643
No 307
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.69 E-value=0.34 Score=47.00 Aligned_cols=81 Identities=21% Similarity=0.140 Sum_probs=70.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCC
Q 003035 644 FRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNL 722 (855)
Q Consensus 644 ~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~ 722 (855)
+....+-+..++.+++...+....-+.|+.++.-..-|+++...|++++|+..++.+.+..|.+ .+--.++.++..+|+
T Consensus 14 ie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 14 IEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 3344555678899999999999999999999999999999999999999999999998888888 777888999988887
Q ss_pred Cc
Q 003035 723 DP 724 (855)
Q Consensus 723 ~~ 724 (855)
..
T Consensus 94 ~~ 95 (160)
T PF09613_consen 94 PS 95 (160)
T ss_pred hH
Confidence 64
No 308
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=94.51 E-value=0.31 Score=52.15 Aligned_cols=99 Identities=14% Similarity=0.115 Sum_probs=82.9
Q ss_pred CCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HH
Q 003035 636 DPGK-SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE----HERLVYEGWILYDTGHREEALSRAEKSISIERTF-EA 709 (855)
Q Consensus 636 ~p~~-~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~----~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a 709 (855)
+|+. +.-|-..|.-+++.++|..|+.+|.++++..-.+ ...|.+++-+.+..|+|-.|+....+++.++|.+ .+
T Consensus 76 ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka 155 (390)
T KOG0551|consen 76 EPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKA 155 (390)
T ss_pred ChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh
Confidence 3443 3455667889999999999999999999875443 4456789999999999999999999999999999 99
Q ss_pred HHHHHHHHHHCCCCchhHHHHHHHHHHHh
Q 003035 710 FFLKAYILADTNLDPESSTYVIQLLEEAL 738 (855)
Q Consensus 710 ~~~lg~~~~~~g~~~~A~~~~~~lle~al 738 (855)
++.=|.++.....+.+|... .+..+
T Consensus 156 ~~R~Akc~~eLe~~~~a~nw----~ee~~ 180 (390)
T KOG0551|consen 156 YIRGAKCLLELERFAEAVNW----CEEGL 180 (390)
T ss_pred hhhhhHHHHHHHHHHHHHHH----Hhhhh
Confidence 99999999999999999998 77777
No 309
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.37 E-value=1.9 Score=44.98 Aligned_cols=51 Identities=14% Similarity=0.236 Sum_probs=40.3
Q ss_pred HhCCHHHHHHHHHHHHccCCCH-----hHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003035 527 EEGQIRAAISEIDRIIVFKLSV-----DCLELRAWLFIAADDYESALRDTLALLAL 577 (855)
Q Consensus 527 ~~~~~~~A~~~~~k~l~~~p~~-----~~l~lra~~y~~~gd~~~A~~~~~~aL~~ 577 (855)
...+.++|+..|++++.+.+.. .++-..-.++..+|+|++..+.|++.|+.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY 94 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY 94 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 4558899999999999887753 34444456889999999999999998864
No 310
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.12 E-value=1.2 Score=46.39 Aligned_cols=193 Identities=13% Similarity=0.093 Sum_probs=109.0
Q ss_pred HcCCHHHHHHHHHHHHhcCCCcHH----HHHHHHHHHHHCCCHHHHHHHHHHHHhccC-----Ch--HHHHHHHHHHHHC
Q 003035 652 RLNCQKAAMRCLRLARNHSSSEHE----RLVYEGWILYDTGHREEALSRAEKSISIER-----TF--EAFFLKAYILADT 720 (855)
Q Consensus 652 ~~g~~~~A~~~l~~al~~~p~~~~----~~~~lg~~~~~~g~~~eAl~~~~kal~~~p-----~~--~a~~~lg~~~~~~ 720 (855)
+..++++|+..|++.+++.|.-.+ ++..+-.+.+++|++++-+..|++.+..-. +. ...+.+-.-....
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 445788899999999988876543 455667788889998888888887765421 11 2222221111122
Q ss_pred CCCchhHHHHHHHHHHHhcCCCCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHH---Hhcc----c-------HHHH
Q 003035 721 NLDPESSTYVIQLLEEALRCPSDGLRKG---QALNNLGSIYVECGKLDQAENCYINA---LDIK----H-------TRAH 783 (855)
Q Consensus 721 g~~~~A~~~~~~lle~al~~~~~~~~p~---~a~~~LG~~y~~~g~~~~A~~~~~kA---L~~~----~-------~~a~ 783 (855)
.+.+--... |+..++...+..+.. ..-..||.+|++.|++.+-.+.+++. -+-+ + ..+|
T Consensus 119 ~~m~LLQ~F----YeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiY 194 (440)
T KOG1464|consen 119 KNMDLLQEF----YETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIY 194 (440)
T ss_pred hhhHHHHHH----HHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhH
Confidence 222222222 444331111111111 33345788888887766544444332 2222 1 1233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccCCHH--HHHHHhh--------cCCHHHHHHHHHHHHhcCCCCcccch
Q 003035 784 QGLARVYYLKNELKAAYDEMTKLLEKAQYSAS--AFEKRSE--------YSDREMAKNDLNMATQLDPLRTYPYR 848 (855)
Q Consensus 784 ~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~--a~~~lg~--------~g~~eeA~~~~~kAl~l~P~~~~~~~ 848 (855)
----..|-.+++..+-...|++++.+..-.|. +.-.+-+ .|++++|-.+|=.|++.....+.|.|
T Consensus 195 AlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRR 269 (440)
T KOG1464|consen 195 ALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRR 269 (440)
T ss_pred hhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcch
Confidence 33334556666666777778888877644333 2222222 68889999999888887766776655
No 311
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=93.99 E-value=1.8 Score=47.74 Aligned_cols=139 Identities=13% Similarity=-0.036 Sum_probs=101.8
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhH
Q 003035 661 RCLRLARNHSSSEHERLVYEGWILYDTGH------------REEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESS 727 (855)
Q Consensus 661 ~~l~~al~~~p~~~~~~~~lg~~~~~~g~------------~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~ 727 (855)
..|++.+.-+|++.++|..+.......-. .+.-+.+|++|++.+|++ ..+..+=....+....++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 46888899999999999887765554432 567889999999999988 66655555556666666666
Q ss_pred HHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHH-----cCCHHHHHHHHHHHHhcc--------------------cH
Q 003035 728 TYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVE-----CGKLDQAENCYINALDIK--------------------HT 780 (855)
Q Consensus 728 ~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~-----~g~~~~A~~~~~kAL~~~--------------------~~ 780 (855)
+. +++++ ...|+ ..|. +++-.. .-.++...+.|.++|..- -.
T Consensus 86 ~~----we~~l-----~~~~~~~~LW~--~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l 154 (321)
T PF08424_consen 86 KK----WEELL-----FKNPGSPELWR--EYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFML 154 (321)
T ss_pred HH----HHHHH-----HHCCCChHHHH--HHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHH
Confidence 66 99999 66666 3333 222222 235778888888887532 12
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 003035 781 RAHQGLARVYYLKNELKAAYDEMTKLLEKA 810 (855)
Q Consensus 781 ~a~~~lg~~~~~~g~~~~A~~~~~kal~~~ 810 (855)
.+..++...+...|-.+.|+..++..++.+
T Consensus 155 ~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 155 YVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 456778888888999999999999999985
No 312
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=93.91 E-value=2 Score=42.29 Aligned_cols=162 Identities=18% Similarity=0.104 Sum_probs=91.8
Q ss_pred cHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhccCChHHHHHHHHHH-HHCCCCchhHHHHHHHHHHHhcCCCCCCCHHHH
Q 003035 673 EHERLVYEGWILYD-TGHREEALSRAEKSISIERTFEAFFLKAYIL-ADTNLDPESSTYVIQLLEEALRCPSDGLRKGQA 750 (855)
Q Consensus 673 ~~~~~~~lg~~~~~-~g~~~eAl~~~~kal~~~p~~~a~~~lg~~~-~~~g~~~~A~~~~~~lle~al~~~~~~~~p~~a 750 (855)
.|+.-..||..+.- +++|++|.+.|++--.-+.-....+.+|.-+ .-.|-.+...+.+++.++.+- +.+..++
T Consensus 33 ~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC-----~~n~~~a 107 (248)
T KOG4014|consen 33 RPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIAC-----DANIPQA 107 (248)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHh-----ccCCHHH
Confidence 34555555554432 4556666666665544332224444444322 222222333333333366666 4333366
Q ss_pred HHHHHHHHHHc-----C--CHHHHHHHHHHHHhcccHHHHHHHHHHHHHc------------------------CCHHHH
Q 003035 751 LNNLGSIYVEC-----G--KLDQAENCYINALDIKHTRAHQGLARVYYLK------------------------NELKAA 799 (855)
Q Consensus 751 ~~~LG~~y~~~-----g--~~~~A~~~~~kAL~~~~~~a~~~lg~~~~~~------------------------g~~~~A 799 (855)
..++|.++..- + +..+|.+++.++-.+.+..+.+.|...+..- .+.++|
T Consensus 108 C~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka 187 (248)
T KOG4014|consen 108 CRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLEDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKA 187 (248)
T ss_pred HhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHH
Confidence 66677666532 2 3677778888877777666655554444332 456777
Q ss_pred HHHHHHHHHHcc----CCHHHHHHHhh--cCCHHHHHHHHHHHHhc
Q 003035 800 YDEMTKLLEKAQ----YSASAFEKRSE--YSDREMAKNDLNMATQL 839 (855)
Q Consensus 800 ~~~~~kal~~~p----~~~~a~~~lg~--~g~~eeA~~~~~kAl~l 839 (855)
.+.--+|-+++- -|.+-.+.||+ -.+-++|.++-++|.++
T Consensus 188 ~qfa~kACel~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 188 LQFAIKACELDIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred HHHHHHHHhcCChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 777777776642 23444666666 77888999998888876
No 313
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=93.83 E-value=0.066 Score=47.59 Aligned_cols=40 Identities=10% Similarity=0.162 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhcCChhHHhh
Q 003035 324 ALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKI 363 (855)
Q Consensus 324 ~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~v~~~~~f~~l 363 (855)
|+.++.+|..|+++.|.+.|.+||.+||..+.++++|.+|
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L 40 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLEL 40 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcC
Confidence 5778999999999999999999999999999998888765
No 314
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.65 E-value=1.1 Score=44.91 Aligned_cols=88 Identities=17% Similarity=0.090 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--cCCHHHHH---
Q 003035 749 QALNNLGSIYVECGKLDQAENCYINALDIK-----HTRAHQGLARVYYLKNELKAAYDEMTKLLEKA--QYSASAFE--- 818 (855)
Q Consensus 749 ~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~-----~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~--p~~~~a~~--- 818 (855)
.++..+|..|.+.|++++|+++|.++.+.. -...++++-++....|++.....+..++-..- +.+.+..+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 889999999999999999999999988765 35677888899999999999999999887753 23343333
Q ss_pred ---HHhh--cCCHHHHHHHHHHH
Q 003035 819 ---KRSE--YSDREMAKNDLNMA 836 (855)
Q Consensus 819 ---~lg~--~g~~eeA~~~~~kA 836 (855)
.+.. .+++.+|-..|-.+
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 3333 88999998888444
No 315
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=93.56 E-value=0.49 Score=41.56 Aligned_cols=75 Identities=15% Similarity=0.039 Sum_probs=56.5
Q ss_pred hHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHCCCHHHHHHHHHH
Q 003035 625 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE--HERLVYEGWILYDTGHREEALSRAEK 699 (855)
Q Consensus 625 al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~--~~~~~~lg~~~~~~g~~~eAl~~~~k 699 (855)
.++.+.+.++.+|++..+.+.+|..++..|++++|++.+-.+++.+++. ..+...+-.++...|.-+.....|++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 4567788999999999999999999999999999999999999998765 55666666666667765555555544
No 316
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.43 E-value=0.11 Score=34.38 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccC
Q 003035 781 RAHQGLARVYYLKNELKAAYDEMTKLLEKAQY 812 (855)
Q Consensus 781 ~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~ 812 (855)
.+++.+|.++..+|++++|+..+++++++.|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35666777777777777777777777766664
No 317
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.40 E-value=1.1 Score=46.22 Aligned_cols=95 Identities=19% Similarity=0.280 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHhc----C-C--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCchh
Q 003035 654 NCQKAAMRCLRLARNH----S-S--SEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPES 726 (855)
Q Consensus 654 g~~~~A~~~l~~al~~----~-p--~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~~a~~~lg~~~~~~g~~~~A 726 (855)
..+++|++.|..|+-. . + .-+..+..+||+|..+|+.+.....+++|+..
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~----------------------- 147 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEF----------------------- 147 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHH-----------------------
Confidence 3466666666665532 1 1 22455677889998888866666666555543
Q ss_pred HHHHHHHHHHHhcCCCC---CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 003035 727 STYVIQLLEEALRCPSD---GLRKGQALNNLGSIYVECGKLDQAENCYINALDIK 778 (855)
Q Consensus 727 ~~~~~~lle~al~~~~~---~~~p~~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~ 778 (855)
|+++++.... ..+...+.+.+|.++.+.|++++|...|.+++...
T Consensus 148 -------y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 148 -------YEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred -------HHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3333321111 11111455566666666666666666666666554
No 318
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=93.38 E-value=1.3 Score=40.55 Aligned_cols=91 Identities=16% Similarity=0.213 Sum_probs=64.3
Q ss_pred HHHHHHHHHH--HHcCCHHHHHHHHHHHHhcc--------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----
Q 003035 749 QALNNLGSIY--VECGKLDQAENCYINALDIK--------------HTRAHQGLARVYYLKNELKAAYDEMTKLLE---- 808 (855)
Q Consensus 749 ~a~~~LG~~y--~~~g~~~~A~~~~~kAL~~~--------------~~~a~~~lg~~~~~~g~~~~A~~~~~kal~---- 808 (855)
.+|..|+..- ..-|-|++|...+++|+++. |..+|-.|+..+..+|+|++++..-.+++.
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence 4555555443 44578999999999999764 456778899999999999988877777764
Q ss_pred ---HccCCHHHH----HHHhh----cCCHHHHHHHHHHHHhc
Q 003035 809 ---KAQYSASAF----EKRSE----YSDREMAKNDLNMATQL 839 (855)
Q Consensus 809 ---~~p~~~~a~----~~lg~----~g~~eeA~~~~~kAl~l 839 (855)
++.+....| ..++. .|+.++|.+.|+++-++
T Consensus 88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 455544333 33444 89999999999998765
No 319
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.36 E-value=0.1 Score=34.50 Aligned_cols=31 Identities=26% Similarity=0.320 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhccCC
Q 003035 676 RLVYEGWILYDTGHREEALSRAEKSISIERT 706 (855)
Q Consensus 676 ~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~ 706 (855)
+++.+|.++..+|++++|+..++++++.+|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4566666666666677777666666666654
No 320
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=93.34 E-value=0.76 Score=57.54 Aligned_cols=167 Identities=15% Similarity=0.046 Sum_probs=126.2
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHH------HHH-HHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------c
Q 003035 639 KSFLRFRQSLLLLRLNCQKAAMR------CLR-LARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI-------E 704 (855)
Q Consensus 639 ~~~~~~~~a~~l~~~g~~~~A~~------~l~-~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~-------~ 704 (855)
.+.-.+..+...+.+|.+.+|.+ .+. ..-.+.|..+..+..++.++...|++++|+..-+++.-+ +
T Consensus 931 ~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~d 1010 (1236)
T KOG1839|consen 931 EAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKD 1010 (1236)
T ss_pred hhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCC
Confidence 34445566666677777777776 444 233457888999999999999999999999998887654 2
Q ss_pred -CCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcC---CCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003035 705 -RTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRC---PSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDI 777 (855)
Q Consensus 705 -p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~---~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~ 777 (855)
|+. ..|.+++......++...|... +.++.+. ...+..|. ....+++.+++..++++.|+++.+.|+.+
T Consensus 1011 s~~t~~~y~nlal~~f~~~~~~~al~~----~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1011 SPNTKLAYGNLALYEFAVKNLSGALKS----LNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAK 1086 (1236)
T ss_pred CHHHHHHhhHHHHHHHhccCccchhhh----HHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 333 7888999888888888889888 7777632 12233454 67789999999999999999999999987
Q ss_pred c----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 003035 778 K----------HTRAHQGLARVYYLKNELKAAYDEMTKLLEK 809 (855)
Q Consensus 778 ~----------~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~ 809 (855)
. ....+..+++....++++..|....+....+
T Consensus 1087 ~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1087 NKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred HhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 6 3455677788888888888877777666654
No 321
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=93.25 E-value=0.31 Score=38.18 Aligned_cols=32 Identities=25% Similarity=0.215 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh
Q 003035 676 RLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (855)
Q Consensus 676 ~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~ 707 (855)
.++++|..+++.|+|++|..+.+.+++..|++
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 34556666666666666666666666666665
No 322
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=93.21 E-value=12 Score=40.65 Aligned_cols=271 Identities=14% Similarity=0.048 Sum_probs=153.7
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcc--CC--C-------HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcc
Q 003035 519 KYRAVAKMEEGQIRAAISEIDRIIVF--KL--S-------VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGR 587 (855)
Q Consensus 519 ~~~a~~~~~~~~~~~A~~~~~k~l~~--~p--~-------~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~ 587 (855)
..++...+..+++++++..|.+++.. .| + .+.....+.+|.+.|++++-...++..-. +...
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rp-------f~~~ 80 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRP-------FLSS 80 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH-------HHHH
Confidence 45677778888899999999999873 12 1 13344568899999998775444333221 1111
Q ss_pred cchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCCh------HHHHHHHHHHHHcCCHHHHHH
Q 003035 588 VSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKS------FLRFRQSLLLLRLNCQKAAMR 661 (855)
Q Consensus 588 ~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~------~~~~~~a~~l~~~g~~~~A~~ 661 (855)
++-.....+++..++.+...+ .+.+ ..+.++...++-.-... .+-.++..+|+..++|.+|+.
T Consensus 81 v~KakaaKlvR~Lvd~~~~~~---------~~~~--~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAla 149 (411)
T KOG1463|consen 81 VSKAKAAKLVRSLVDMFLKID---------DGTG--DQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALA 149 (411)
T ss_pred hhhHHHHHHHHHHHHHHccCC---------CCcc--hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 111111222222221111000 0000 01122222222111111 122355678899999999998
Q ss_pred HHHHHHh----cC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------cCChHH--HHHHHHHHHHCCCCchhH
Q 003035 662 CLRLARN----HS--SSEHERLVYEGWILYDTGHREEALSRAEKSISI------ERTFEA--FFLKAYILADTNLDPESS 727 (855)
Q Consensus 662 ~l~~al~----~~--p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~------~p~~~a--~~~lg~~~~~~g~~~~A~ 727 (855)
.....+. ++ +.-.+++.....+|+...+..+|.+.+..|-.. .|...+ =..-|..+....+|..|.
T Consensus 150 L~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTaf 229 (411)
T KOG1463|consen 150 LINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAF 229 (411)
T ss_pred HHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHH
Confidence 7665543 33 334677788889999999999988887766543 233322 234478888889999999
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHH---HHHHHcCCHHHHHHHH--HHHHhcc--cHHHHHHHHHHHHHcC--CHHH
Q 003035 728 TYVIQLLEEALRCPSDGLRKGQALNNLG---SIYVECGKLDQAENCY--INALDIK--HTRAHQGLARVYYLKN--ELKA 798 (855)
Q Consensus 728 ~~~~~lle~al~~~~~~~~p~~a~~~LG---~~y~~~g~~~~A~~~~--~kAL~~~--~~~a~~~lg~~~~~~g--~~~~ 798 (855)
++ |-+|.+-...--.+-.+...|- .+-...+..++--... +.+++.. +..++-..+.++..+. ++..
T Consensus 230 SY----FyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~ 305 (411)
T KOG1463|consen 230 SY----FYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEK 305 (411)
T ss_pred HH----HHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHH
Confidence 99 8888854432222223333332 2233345555443333 3455544 7778888888777654 7888
Q ss_pred HHHHHHHHHHHcc
Q 003035 799 AYDEMTKLLEKAQ 811 (855)
Q Consensus 799 A~~~~~kal~~~p 811 (855)
|+..|.+=+..+|
T Consensus 306 AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 306 ALADYKKELAEDP 318 (411)
T ss_pred HHHHhHHHHhcCh
Confidence 8888887665543
No 323
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=93.18 E-value=1.9 Score=39.45 Aligned_cols=89 Identities=18% Similarity=0.081 Sum_probs=68.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------cCC
Q 003035 646 QSLLLLRLNCQKAAMRCLRLARNHSSS------------EHERLVYEGWILYDTGHREEALSRAEKSISI-------ERT 706 (855)
Q Consensus 646 ~a~~l~~~g~~~~A~~~l~~al~~~p~------------~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~-------~p~ 706 (855)
.|.-.++.|-|++|...++++.+..-. ++-.+-.|+..+..+|+|++++...++++.. +.+
T Consensus 15 ~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qd 94 (144)
T PF12968_consen 15 DAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQD 94 (144)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTST
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccc
Confidence 455567789999999999999876422 1233467888999999999999999988865 344
Q ss_pred h-----HHHHHHHHHHHHCCCCchhHHHHHHHHHHHh
Q 003035 707 F-----EAFFLKAYILADTNLDPESSTYVIQLLEEAL 738 (855)
Q Consensus 707 ~-----~a~~~lg~~~~~~g~~~~A~~~~~~lle~al 738 (855)
. .+-++.|.++...|..++|+.. |+.+-
T Consensus 95 eGklWIaaVfsra~Al~~~Gr~~eA~~~----fr~ag 127 (144)
T PF12968_consen 95 EGKLWIAAVFSRAVALEGLGRKEEALKE----FRMAG 127 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHH----HHHHH
T ss_pred cchhHHHHHHHHHHHHHhcCChHHHHHH----HHHHH
Confidence 3 5567899999999999999999 98886
No 324
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=93.15 E-value=13 Score=39.26 Aligned_cols=273 Identities=17% Similarity=0.082 Sum_probs=140.7
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHccCCC---------HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccc
Q 003035 519 KYRAVAKMEEGQIRAAISEIDRIIVFKLS---------VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS 589 (855)
Q Consensus 519 ~~~a~~~~~~~~~~~A~~~~~k~l~~~p~---------~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~ 589 (855)
..+|+.....+++++|+..|.+++....+ .......+.+|..+|++..--+.+...-+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre------------- 73 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSRE------------- 73 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHH-------------
Confidence 34677788899999999999999975322 23344567888888887764433322111
Q ss_pred hhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003035 590 GDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH 669 (855)
Q Consensus 590 ~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~ 669 (855)
...++..+ ....++...++..|..+..+-.+-.+. ....+=|.+.=+..+.
T Consensus 74 ----------~m~~ftk~----------------k~~KiirtLiekf~~~~dsl~dqi~v~--~~~iewA~rEkr~fLr- 124 (421)
T COG5159 74 ----------AMEDFTKP----------------KITKIIRTLIEKFPYSSDSLEDQIKVL--TALIEWADREKRKFLR- 124 (421)
T ss_pred ----------HHHHhcch----------------hHHHHHHHHHHhcCCCCccHHHHHHHH--HHHHHHHHHHHHHHHH-
Confidence 00111110 112333344444333221111000000 0001111111111111
Q ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------cCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCC
Q 003035 670 SSSEHERLVYEGWILYDTGHREEALSRAEKSISI------ERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPS 742 (855)
Q Consensus 670 ~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~------~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~ 742 (855)
.+.-..+..++++.|.|.+|+....-.+.- .|+- ..+..-..+|....+..++... +-.|--...
T Consensus 125 ----~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaS----LTaArt~An 196 (421)
T COG5159 125 ----LELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKAS----LTAARTLAN 196 (421)
T ss_pred ----HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhH----HHHHHHHhh
Confidence 122345677788888888888776554432 2333 6677777888888777777766 544432222
Q ss_pred CCCCHH--HHH--HHHHHHHHHcCCHHHHHHHHHHHHhcc-----cHHHHHHHHHHHHH---cCCHHHHHHHH--HHHHH
Q 003035 743 DGLRKG--QAL--NNLGSIYVECGKLDQAENCYINALDIK-----HTRAHQGLARVYYL---KNELKAAYDEM--TKLLE 808 (855)
Q Consensus 743 ~~~~p~--~a~--~~LG~~y~~~g~~~~A~~~~~kAL~~~-----~~~a~~~lg~~~~~---~g~~~~A~~~~--~kal~ 808 (855)
...-|. ++- ..-|..+.+-.+|..|-.+|-+|++-. +..+...+-+.+.. .+..++--..+ +.+++
T Consensus 197 s~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~ 276 (421)
T COG5159 197 SAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLK 276 (421)
T ss_pred ccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHh
Confidence 222333 222 223566667778999999999998754 55554444332221 12222222221 22222
Q ss_pred -HccCCHHHHHHHhh------cCCHHHHHHHHHHHHhcCC
Q 003035 809 -KAQYSASAFEKRSE------YSDREMAKNDLNMATQLDP 841 (855)
Q Consensus 809 -~~p~~~~a~~~lg~------~g~~eeA~~~~~kAl~l~P 841 (855)
.+.....+....++ ..+++.|++.|+.-+-.||
T Consensus 277 ~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~ 316 (421)
T COG5159 277 HYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDS 316 (421)
T ss_pred hhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCH
Confidence 23334455555555 5677788888877766554
No 325
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.05 E-value=0.17 Score=51.37 Aligned_cols=59 Identities=14% Similarity=0.030 Sum_probs=55.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh
Q 003035 649 LLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (855)
Q Consensus 649 ~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~ 707 (855)
.+.+.++.+.|.+.|.+++++.|.....|+.+|......|+++.|.+.|++.++++|.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 45677899999999999999999999999999999999999999999999999999987
No 326
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.03 E-value=0.31 Score=50.29 Aligned_cols=62 Identities=11% Similarity=0.087 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHcCCH-------HHHHHHHHHHHhcc--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 003035 749 QALNNLGSIYVECGKL-------DQAENCYINALDIK--------HTRAHQGLARVYYLKNELKAAYDEMTKLLEKA 810 (855)
Q Consensus 749 ~a~~~LG~~y~~~g~~-------~~A~~~~~kAL~~~--------~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~ 810 (855)
..+..+|++|...|+. ..|.+.|++|++.. ...+++.+|.+..+.|++++|..+|.+++...
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 5677788999888884 44555555555443 35678889999999999999999999998754
No 327
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=92.72 E-value=0.23 Score=52.32 Aligned_cols=67 Identities=19% Similarity=0.206 Sum_probs=59.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh
Q 003035 756 SIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE 822 (855)
Q Consensus 756 ~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~ 822 (855)
.-....|+.++|...|+-|+.+. ++.++..+|.+....++.-+|-.+|-+|+.+.|.|..++.++..
T Consensus 124 ~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 124 GRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 33456789999999999999998 89999999999988889999999999999999999999988888
No 328
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.43 E-value=4.9 Score=39.45 Aligned_cols=131 Identities=13% Similarity=0.087 Sum_probs=92.1
Q ss_pred HHCCCHHHHHHHHHHHHhccCCh---HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHH
Q 003035 685 YDTGHREEALSRAEKSISIERTF---EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPS-DGLRKGQALNNLGSIYVE 760 (855)
Q Consensus 685 ~~~g~~~eAl~~~~kal~~~p~~---~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~-~~~~p~~a~~~LG~~y~~ 760 (855)
...|..++|+..|...-+-.-.. -+.+..|.+..+.|+...|+.. |.++-+... .....+-+...-++++.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~a----Fdeia~dt~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAA----FDEIAADTSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHH----HHHHhccCCCcchhhHHHHHHHHHHHhc
Confidence 45677888998888877665444 6778889999999999999999 988872211 111112566667888889
Q ss_pred cCCHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHh
Q 003035 761 CGKLDQAENCYINALDIK----HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS 821 (855)
Q Consensus 761 ~g~~~~A~~~~~kAL~~~----~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg 821 (855)
.|-|+.-..-.+.. .-+ ...+.-.||..-++-|++.+|..+|..+.. +.+.|....+++
T Consensus 145 ~gsy~dV~srvepL-a~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRA 207 (221)
T COG4649 145 NGSYDDVSSRVEPL-AGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRA 207 (221)
T ss_pred cccHHHHHHHhhhc-cCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHH
Confidence 99988766555432 223 345667889999999999999999987766 444444444443
No 329
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=92.41 E-value=0.059 Score=58.33 Aligned_cols=144 Identities=15% Similarity=0.111 Sum_probs=114.8
Q ss_pred EEEEEcCeEEEeeehhhhcCCHHHHHhhcCCCccCCCCeeEecCCCCCHHHHHHHHHHhccCCCCCCCH--HHHHHHHHH
Q 003035 220 VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCP--GIVLELLSF 297 (855)
Q Consensus 220 V~f~v~~~~~~aHr~vLaa~S~~F~~mf~~~~~E~~~~~I~l~~~~is~~~~~~ll~y~YTg~l~~~~~--~~~~~ll~~ 297 (855)
++.......+++|+.+|...|+.|..+....-.-+....+.+ -+++...+..+..++|.+ ++ ..+ ...+.++.+
T Consensus 29 ~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~c~~~~~~~~~l~~~-~e-k~e~~~~~ihll~~ 104 (319)
T KOG1778|consen 29 EIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKI--LGVPCKAVNVFIRFLYSS-LE-KHEMVFFDIHLLAL 104 (319)
T ss_pred hhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhccee--ecccccccchhhhhhccc-hh-hhHHHHHHHHHHhh
Confidence 444445677999999999999999888766622333446667 788999999999999988 55 333 334567777
Q ss_pred hchhChHHHHHHHHHHHHhhcCChhhHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhcCChhHHhhhcCc
Q 003035 298 ANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKIFCSS 367 (855)
Q Consensus 298 A~~~~~~~Lk~~C~~~l~~~l~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~v~~~~~f~~ll~~~ 367 (855)
...+-++.++..|...+...+....|++.++..+..+....|..++...|...|..+.+++.....-|..
T Consensus 105 ~~~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~~~~~~H~~t~~~~~~~c~~ 174 (319)
T KOG1778|consen 105 SHVYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIMLLFDLHLQTEKWFAYTCPI 174 (319)
T ss_pred hhhhhccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcccCceeeecCc
Confidence 7899999999999999988444389999999999999999999999999999999998877766655544
No 330
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=92.28 E-value=0.42 Score=37.40 Aligned_cols=37 Identities=24% Similarity=0.030 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHH
Q 003035 782 AHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFE 818 (855)
Q Consensus 782 a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~ 818 (855)
.++.+|..+++.|+|++|..+.+.++++.|+|..+..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 5788899999999999999999999999999987754
No 331
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.18 E-value=1.2 Score=42.54 Aligned_cols=75 Identities=21% Similarity=0.162 Sum_probs=65.1
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCc
Q 003035 650 LLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDP 724 (855)
Q Consensus 650 l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~ 724 (855)
-+..++.+++...+....-+.|+.++....-|+++...|++++|+..++...+-.+.+ .+.-.++.++..+|+.+
T Consensus 20 aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 20 ALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 3458899999999999999999999999999999999999999999999999888776 66677777777777653
No 332
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.06 E-value=19 Score=38.25 Aligned_cols=206 Identities=14% Similarity=0.048 Sum_probs=107.4
Q ss_pred HhhhhHhhhhcHHHHHHHHHHHHHhcc----------hhhhhhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHhh
Q 003035 424 QLGCVMFEREEYKDACYYFEAAADAGH----------IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSL 493 (855)
Q Consensus 424 ~LG~~~l~~g~~~eA~~~~~~Al~~~~----------~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~ 493 (855)
.+++-..+.+++++|+..|.+.+..+. ..+...+..+|...|++..--+.+...-+ .|+ .
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre-----~m~-----~ 77 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSRE-----AME-----D 77 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHH-----HHH-----H
Confidence 355666777888888888888775421 13567777888888876543322221100 000 0
Q ss_pred ccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCCCH-------hHHHHHHHHHHHcCCHHH
Q 003035 494 YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV-------DCLELRAWLFIAADDYES 566 (855)
Q Consensus 494 ~~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~~-------~~l~lra~~y~~~gd~~~ 566 (855)
+ ...+-.+.....++..|..+.. ++.-+...+..++..... +.-.-+..++++.|.|.+
T Consensus 78 f-tk~k~~KiirtLiekf~~~~ds-------------l~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~Ysd 143 (421)
T COG5159 78 F-TKPKITKIIRTLIEKFPYSSDS-------------LEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSD 143 (421)
T ss_pred h-cchhHHHHHHHHHHhcCCCCcc-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 0 0122233345555555554432 233333333333321100 001124678889999999
Q ss_pred HHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHH
Q 003035 567 ALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQ 646 (855)
Q Consensus 567 A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~ 646 (855)
|+..+.-++..-.. .|| .|.-..+|..-
T Consensus 144 alalIn~ll~ElKk---------------------------------------~DD-------------K~~Li~vhllE 171 (421)
T COG5159 144 ALALINPLLHELKK---------------------------------------YDD-------------KINLITVHLLE 171 (421)
T ss_pred HHHHHHHHHHHHHh---------------------------------------hcC-------------ccceeehhhhh
Confidence 98877766531100 000 11112233333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhc-----CCCcHHHH--HHHHHHHHHCCCHHHHHHHHHHHHhccC
Q 003035 647 SLLLLRLNCQKAAMRCLRLARNH-----SSSEHERL--VYEGWILYDTGHREEALSRAEKSISIER 705 (855)
Q Consensus 647 a~~l~~~g~~~~A~~~l~~al~~-----~p~~~~~~--~~lg~~~~~~g~~~eAl~~~~kal~~~p 705 (855)
+.+|....+..++...+..|... .|....+. ..-|..+.+..+|.-|-.+|-++++-..
T Consensus 172 SKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft 237 (421)
T COG5159 172 SKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFT 237 (421)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccc
Confidence 44555555566666666655543 24333222 3446777788888888888888887654
No 333
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.97 E-value=0.27 Score=35.68 Aligned_cols=29 Identities=38% Similarity=0.560 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 003035 750 ALNNLGSIYVECGKLDQAENCYINALDIK 778 (855)
Q Consensus 750 a~~~LG~~y~~~g~~~~A~~~~~kAL~~~ 778 (855)
++++||.+|..+|++++|+.++++++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 45666666666666666666666666543
No 334
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=91.91 E-value=5.6 Score=46.07 Aligned_cols=132 Identities=19% Similarity=0.069 Sum_probs=97.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHH
Q 003035 653 LNCQKAAMRCLRLARNHSSSEHERLVY--EGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTY 729 (855)
Q Consensus 653 ~g~~~~A~~~l~~al~~~p~~~~~~~~--lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~ 729 (855)
.|....++..+...+.++|.+++.+.. +...+...++...+....+..+..+|++ .++.++|.++...|....+...
T Consensus 44 ~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~ 123 (620)
T COG3914 44 EGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALAD 123 (620)
T ss_pred cCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHH
Confidence 344444677777777888888887533 5777788899989999999999999999 9999999998888888777777
Q ss_pred HHHHHHH-HhcCCCCCCCHH--HH------HHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHc
Q 003035 730 VIQLLEE-ALRCPSDGLRKG--QA------LNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLK 793 (855)
Q Consensus 730 ~~~lle~-al~~~~~~~~p~--~a------~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~ 793 (855)
+.. +. ...|. ++ +..+|.....+|+..++....+++..+. ++++...+......+
T Consensus 124 ----~~~~a~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~ 189 (620)
T COG3914 124 ----ISEIAE-----WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQ 189 (620)
T ss_pred ----HHHHHH-----hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHh
Confidence 443 44 33333 22 2236888888999999999999999988 666555555553333
No 335
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.73 E-value=15 Score=42.39 Aligned_cols=75 Identities=9% Similarity=0.032 Sum_probs=46.3
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc
Q 003035 629 INQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE----HERLVYEGWILYDTGHREEALSRAEKSISIE 704 (855)
Q Consensus 629 ~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~----~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~ 704 (855)
+....+..|.++...+..+.++...|+.+.|+..++..+. +.- +-.++-+||++.-+.+|..|...+......+
T Consensus 256 Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~des 333 (546)
T KOG3783|consen 256 LKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDES 333 (546)
T ss_pred hHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh
Confidence 3444455666666666666666666666666666666665 222 2223567777777777777777776666554
Q ss_pred C
Q 003035 705 R 705 (855)
Q Consensus 705 p 705 (855)
.
T Consensus 334 d 334 (546)
T KOG3783|consen 334 D 334 (546)
T ss_pred h
Confidence 3
No 336
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.70 E-value=0.27 Score=35.64 Aligned_cols=29 Identities=24% Similarity=0.292 Sum_probs=25.2
Q ss_pred HHHHHhhhhHhhhhcHHHHHHHHHHHHHh
Q 003035 420 LALHQLGCVMFEREEYKDACYYFEAAADA 448 (855)
Q Consensus 420 ~a~~~LG~~~l~~g~~~eA~~~~~~Al~~ 448 (855)
.++..||.+|..+|++++|+.++++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46788999999999999999999999865
No 337
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=91.67 E-value=9.6 Score=41.32 Aligned_cols=160 Identities=19% Similarity=0.100 Sum_probs=110.3
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc----cCCh---HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCC-CCCHH-
Q 003035 678 VYEGWILYDTGHREEALSRAEKSISI----ERTF---EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSD-GLRKG- 748 (855)
Q Consensus 678 ~~lg~~~~~~g~~~eAl~~~~kal~~----~p~~---~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~-~~~p~- 748 (855)
..+..+|++.++|.+|+......+.- +-.. +.+..-..+|....+..+|... +-.|--.... -..|.
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~Kakas----LTsART~AnaiYcpPql 207 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKAS----LTSARTTANAIYCPPQL 207 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHH----HHHHHHhhcccccCHHH
Confidence 45788999999999999887776543 2222 6777778889999999998888 6555421111 22333
Q ss_pred HHH--HHHHHHHHHcCCHHHHHHHHHHHHhcc-----cHHHHHHHHHHH---HHcCCHH--HHHHHHHHHHHHccCCHHH
Q 003035 749 QAL--NNLGSIYVECGKLDQAENCYINALDIK-----HTRAHQGLARVY---YLKNELK--AAYDEMTKLLEKAQYSASA 816 (855)
Q Consensus 749 ~a~--~~LG~~y~~~g~~~~A~~~~~kAL~~~-----~~~a~~~lg~~~---~~~g~~~--~A~~~~~kal~~~p~~~~a 816 (855)
++- ..=|.++....+|..|..+|=+|.+-. +..+...|-+.+ ...+..+ .++-.-+.+++.+..+.++
T Consensus 208 Qa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~A 287 (411)
T KOG1463|consen 208 QATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDA 287 (411)
T ss_pred HHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHH
Confidence 222 233667777789999999999999754 455554433322 2234444 4555556677777778888
Q ss_pred HHHHhh------cCCHHHHHHHHHHHHhcCC
Q 003035 817 FEKRSE------YSDREMAKNDLNMATQLDP 841 (855)
Q Consensus 817 ~~~lg~------~g~~eeA~~~~~kAl~l~P 841 (855)
.-..+. ..+++.|...|+.-+..||
T Consensus 288 mkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 288 MKAVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 888888 6789999999999888776
No 338
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.42 E-value=1.3 Score=44.19 Aligned_cols=97 Identities=13% Similarity=0.012 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh----HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--
Q 003035 675 ERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG-- 748 (855)
Q Consensus 675 ~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~----~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~-- 748 (855)
.++..+|..|.+.|+.++|++.|.++...-... +.++.+-.+....+++.....+ +.++-......-+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~----i~ka~~~~~~~~d~~~~ 112 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKY----IEKAESLIEKGGDWERR 112 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH----HHHHHHHHhccchHHHH
Confidence 445566777777777777777777766654332 5566666666666677766666 555543222211111
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003035 749 -QALNNLGSIYVECGKLDQAENCYINAL 775 (855)
Q Consensus 749 -~a~~~LG~~y~~~g~~~~A~~~~~kAL 775 (855)
.....-|..+...++|.+|.+.|-.++
T Consensus 113 nrlk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 113 NRLKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHccC
Confidence 233334555555666666666665554
No 339
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=91.27 E-value=1.5 Score=50.25 Aligned_cols=112 Identities=19% Similarity=0.143 Sum_probs=93.6
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhccC
Q 003035 628 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH--ERLVYEGWILYDTGHREEALSRAEKSISIER 705 (855)
Q Consensus 628 ~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~--~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p 705 (855)
.+...++.+|.+..++...+..+.-+|+..+|..++..++-..|... -++..+|.++.+.|...+|--.+..|+.-.|
T Consensus 201 ~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~ 280 (886)
T KOG4507|consen 201 LIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDAD 280 (886)
T ss_pred HHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCc
Confidence 45677888888888888888888889999999999999988877643 3567889999999999999888888888888
Q ss_pred Ch-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH
Q 003035 706 TF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG 748 (855)
Q Consensus 706 ~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~ 748 (855)
.. .-++.+|.++...+++...... |..+. ..+|.
T Consensus 281 ~~t~n~y~l~~i~aml~~~N~S~~~----ydha~-----k~~p~ 315 (886)
T KOG4507|consen 281 FFTSNYYTLGNIYAMLGEYNHSVLC----YDHAL-----QARPG 315 (886)
T ss_pred cccccceeHHHHHHHHhhhhhhhhh----hhhhh-----ccCcc
Confidence 77 7788999999999999988887 88888 66665
No 340
>PRK10941 hypothetical protein; Provisional
Probab=91.17 E-value=1.7 Score=46.43 Aligned_cols=67 Identities=12% Similarity=0.006 Sum_probs=60.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHH
Q 003035 646 QSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFL 712 (855)
Q Consensus 646 ~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~ 712 (855)
+-..+++.++++.|+++.+..+.++|+++.-+.-+|.+|.++|.+..|...++.-++..|+. .+-..
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 44568899999999999999999999999999999999999999999999999999999988 44433
No 341
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=91.12 E-value=0.23 Score=50.47 Aligned_cols=55 Identities=22% Similarity=0.229 Sum_probs=31.2
Q ss_pred HHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCC
Q 003035 759 VECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS 813 (855)
Q Consensus 759 ~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~ 813 (855)
.+.|+.+.|.+.|.+++++. ....|+.+|....+.|+++.|.+.|++.++++|++
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34455555555565555554 44555555555555555555555555555555543
No 342
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=91.12 E-value=51 Score=41.51 Aligned_cols=107 Identities=17% Similarity=0.015 Sum_probs=70.0
Q ss_pred HHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHhhccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHH
Q 003035 457 LARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAIS 536 (855)
Q Consensus 457 la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~~~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~ 536 (855)
+..+.+..+.+++|+..|+++-..+|.-..-|..+- .-.+..+++|-+..- ...+++|+.
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~---------------~~~~~~~~~ 540 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQF-----RLGITLLEKASEQGD---------------PRDFTQALS 540 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHH-----HhhHHHHHHHHhcCC---------------hHHHHHHHH
Confidence 345566667777777777777777776543332221 112344445443211 135788888
Q ss_pred HHHHHHccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhh
Q 003035 537 EIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMM 583 (855)
Q Consensus 537 ~~~k~l~~~p~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~ 583 (855)
.|++.-.-...|--+.-+|.+|..+|+|++-++.|.-+++..|+++.
T Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 541 EFSYLHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred HHHHhcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence 88887653334444556788999999999999999999999988764
No 343
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=90.64 E-value=35 Score=38.69 Aligned_cols=47 Identities=11% Similarity=0.044 Sum_probs=29.1
Q ss_pred HHHcCCHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003035 758 YVECGKLDQAENCYINALDIK-HTRAHQGLARVYYLKNELKAAYDEMT 804 (855)
Q Consensus 758 y~~~g~~~~A~~~~~kAL~~~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 804 (855)
+...|+|.++.-+-.-..++. .+.++.-+|.++....+|++|...+.
T Consensus 472 Lysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred HHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 345666666665555555666 66666666666666666666666554
No 344
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.09 E-value=41 Score=38.65 Aligned_cols=130 Identities=25% Similarity=0.251 Sum_probs=81.2
Q ss_pred ChHHHHHHHHHHHHhhcCChhhHHHHHHHHH-HhccHHHHHHHHHHHHhhhhhhcCChhHHhhhcCchhHHHHHhhchhh
Q 003035 302 CCEEMKSACDAHLASLVGDIEDALILIDYGL-EERATLLVASCLQVLLRELPSSLYNPKVMKIFCSSEATERLANVGHAS 380 (855)
Q Consensus 302 ~~~~Lk~~C~~~l~~~l~~~~n~~~~~~~A~-~~~~~~L~~~c~~~i~~~~~~v~~~~~f~~ll~~~~~~~r~~~~~~~~ 380 (855)
.++.|+..|.++|+..-+ +.+.++--+. .++-..|-+.|+--+..-|.+-.+.. .++-+|. |+. .-.++
T Consensus 29 ~~~~~~~ic~~hl~~~k~---si~~lyisg~~~~s~~~l~d~~l~~~~~~f~~n~k~~-~veh~c~-----~~l-~~~e~ 98 (711)
T COG1747 29 ILDVLKGICDEHLAHSKN---SIIALYISGIISLSKQLLDDSCLVTLLTIFGDNHKNQ-IVEHLCT-----RVL-EYGES 98 (711)
T ss_pred HHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHhhhccccchHHHHHHHHhccchHHH-HHHHHHH-----HHH-Hhcch
Confidence 356789999999987544 3334433332 34555677778776666665544432 2333332 222 12334
Q ss_pred HHHHHHHHHhhcccccchhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHH
Q 003035 381 FLLYYFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAAD 447 (855)
Q Consensus 381 f~l~~~La~~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~ 447 (855)
-..|+.++++|++.+ .+.-..+-+++++.+=++.... -.|+..| ++++-..|...|.+|+.
T Consensus 99 kmal~el~q~y~en~--n~~l~~lWer~ve~dfnDvv~~---ReLa~~y-Ekik~sk~a~~f~Ka~y 159 (711)
T COG1747 99 KMALLELLQCYKENG--NEQLYSLWERLVEYDFNDVVIG---RELADKY-EKIKKSKAAEFFGKALY 159 (711)
T ss_pred HHHHHHHHHHHHhcC--chhhHHHHHHHHHhcchhHHHH---HHHHHHH-HHhchhhHHHHHHHHHH
Confidence 445888999999885 4667788899998765553221 2455544 45899999999999985
No 345
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=89.98 E-value=20 Score=38.13 Aligned_cols=128 Identities=12% Similarity=0.113 Sum_probs=57.9
Q ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHHHHH
Q 003035 672 SEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQAL 751 (855)
Q Consensus 672 ~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~~a~ 751 (855)
.+++.+..+|..+...|++.+|..+|-.+ -+|+-.++..+-......|...+.--. +-+++
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~--~~~~~~~~~~ll~~~~~~~~~~e~dlf----i~RaV------------- 148 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLG--TDPSAFAYVMLLEEWSTKGYPSEADLF----IARAV------------- 148 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHTSS--HHHH----HHHHH-------------
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhc--CChhHHHHHHHHHHHHHhcCCcchhHH----HHHHH-------------
Confidence 46777777888888888777777766332 111112222222223333444444333 33333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc-------------c--cHHHHHHHHHHH---HHcCC---HHHHHHHHHHHHHHc
Q 003035 752 NNLGSIYVECGKLDQAENCYINALDI-------------K--HTRAHQGLARVY---YLKNE---LKAAYDEMTKLLEKA 810 (855)
Q Consensus 752 ~~LG~~y~~~g~~~~A~~~~~kAL~~-------------~--~~~a~~~lg~~~---~~~g~---~~~A~~~~~kal~~~ 810 (855)
..|...|+...|...+..-++. . ....+.|..+.+ ...++ +..-.+.|+..|+.+
T Consensus 149 ----L~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~L~~~Y~~~L~rd 224 (260)
T PF04190_consen 149 ----LQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKKLCEKYKPSLKRD 224 (260)
T ss_dssp ----HHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHHHHHHTHH---HH
T ss_pred ----HHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHHHHHHhCcccccc
Confidence 2345566666666655444433 1 111122222222 22232 233344555556667
Q ss_pred cCCHHHHHHHhh
Q 003035 811 QYSASAFEKRSE 822 (855)
Q Consensus 811 p~~~~a~~~lg~ 822 (855)
|....++..+|.
T Consensus 225 ~~~~~~L~~IG~ 236 (260)
T PF04190_consen 225 PSFKEYLDKIGQ 236 (260)
T ss_dssp HHTHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777777777
No 346
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=89.74 E-value=1.1 Score=40.60 Aligned_cols=85 Identities=16% Similarity=0.225 Sum_probs=56.0
Q ss_pred cccccchHHHHHHHHHcCCCCh---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 003035 619 SVDDIGSLAVINQMLINDPGKS---FLRFRQSLLLLRLNC-----------QKAAMRCLRLARNHSSSEHERLVYEGWIL 684 (855)
Q Consensus 619 ~~~d~~al~~~~~~l~~~p~~~---~~~~~~a~~l~~~g~-----------~~~A~~~l~~al~~~p~~~~~~~~lg~~~ 684 (855)
..+.+.++.+++..+..++++. .++..+|.++.++.. .-.++++|.++..+.|..+..++.+|.-+
T Consensus 9 rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~~l 88 (111)
T PF04781_consen 9 RGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELASQL 88 (111)
T ss_pred ccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHHHh
Confidence 3455667777777777776665 566677776654322 22466677777777777777777777666
Q ss_pred HHCCCHHHHHHHHHHHHhc
Q 003035 685 YDTGHREEALSRAEKSISI 703 (855)
Q Consensus 685 ~~~g~~~eAl~~~~kal~~ 703 (855)
-....|++++...++++.+
T Consensus 89 ~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 89 GSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hhHHHHHHHHHHHHHHhcc
Confidence 6666677777777776664
No 347
>PRK10941 hypothetical protein; Provisional
Probab=89.68 E-value=1.8 Score=46.19 Aligned_cols=70 Identities=11% Similarity=0.108 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHH
Q 003035 749 QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFE 818 (855)
Q Consensus 749 ~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~ 818 (855)
....|+-.+|.+.++++.|+.+.+..+.+. ++.-+.-.|.+|.+.|.+..|...++.-++..|+++.+-.
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 567888999999999999999999999999 8888889999999999999999999999999999988754
No 348
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=89.47 E-value=69 Score=40.41 Aligned_cols=91 Identities=15% Similarity=0.185 Sum_probs=71.7
Q ss_pred hhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhhhh-------cHHHHHHHHHHHHH-hcchhhhhhHHHHHHHhCChHH
Q 003035 398 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFERE-------EYKDACYYFEAAAD-AGHIYSLAGLARAKYKVGQQYS 469 (855)
Q Consensus 398 ~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g-------~~~eA~~~~~~Al~-~~~~~a~~~la~~~~~~g~~~~ 469 (855)
++.|+..|.+.....|...+.-+|.+.+|...+++- .+++|..-|++.-. .+.+--+.|.|.+|..+|++++
T Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (932)
T PRK13184 491 YDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKALVYQRLGEYNE 570 (932)
T ss_pred HHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHHHHHHhhhHHH
Confidence 889999999999988888777788999998888753 35566666655332 1233457899999999999999
Q ss_pred HHHHHHhHHHcCCCchHHH
Q 003035 470 AYKLINSIISEHKPTGWMY 488 (855)
Q Consensus 470 A~~~l~~~i~~~p~~~~~y 488 (855)
-++.+.-+++.+|+.+..-
T Consensus 571 ~~~~~~~~~~~~~~~~~~~ 589 (932)
T PRK13184 571 EIKSLLLALKRYSQHPEIS 589 (932)
T ss_pred HHHHHHHHHHhcCCCCccH
Confidence 9999999999999876543
No 349
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=89.21 E-value=0.91 Score=38.71 Aligned_cols=52 Identities=13% Similarity=0.138 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHhchhChHHHHHHHHHHHHhhcC--ChhhHHHHHHHHHHhccH
Q 003035 286 FCPGIVLELLSFANRFCCEEMKSACDAHLASLVG--DIEDALILIDYGLEERAT 337 (855)
Q Consensus 286 ~~~~~~~~ll~~A~~~~~~~Lk~~C~~~l~~~l~--~~~n~~~~~~~A~~~~~~ 337 (855)
++.+.+.+|+.+|+.++++.|...|++.+...+. |++.+..++.+...+...
T Consensus 11 ~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t~e 64 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLTPE 64 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSSHH
T ss_pred cCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCCHH
Confidence 5678999999999999999999999999999886 466666666666554433
No 350
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=88.74 E-value=2.1 Score=38.83 Aligned_cols=89 Identities=9% Similarity=0.071 Sum_probs=70.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHCCC-----------HHHHHHHHHHHHhccCCh-HHH
Q 003035 646 QSLLLLRLNCQKAAMRCLRLARNHSSSEH---ERLVYEGWILYDTGH-----------REEALSRAEKSISIERTF-EAF 710 (855)
Q Consensus 646 ~a~~l~~~g~~~~A~~~l~~al~~~p~~~---~~~~~lg~~~~~~g~-----------~~eAl~~~~kal~~~p~~-~a~ 710 (855)
+|.-+++.|++-+|++..+..+...+++. ..+..-|.+++.+.. .-.+++.|.++..+.|.. ..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 35667899999999999999999888766 455677888876542 345889999999999988 888
Q ss_pred HHHHHHHHHCCCCchhHHHHHHHHHHHh
Q 003035 711 FLKAYILADTNLDPESSTYVIQLLEEAL 738 (855)
Q Consensus 711 ~~lg~~~~~~g~~~~A~~~~~~lle~al 738 (855)
+.+|.-+....-|.++... -++++
T Consensus 82 ~~la~~l~s~~~Ykk~v~k----ak~~L 105 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKK----AKRGL 105 (111)
T ss_pred HHHHHHhhhHHHHHHHHHH----HHHHh
Confidence 8888777777777777777 66666
No 351
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=88.56 E-value=2.4 Score=37.49 Aligned_cols=59 Identities=24% Similarity=0.149 Sum_probs=45.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCC---------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh
Q 003035 649 LLLRLNCQKAAMRCLRLARNHSSS---------EHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (855)
Q Consensus 649 ~l~~~g~~~~A~~~l~~al~~~p~---------~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~ 707 (855)
.-++.|++.+|++.+.+....... ...+..++|.++...|++++|+..+++++++....
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 346789999998888887765322 23556788999999999999999999999886544
No 352
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=88.45 E-value=3.2 Score=38.98 Aligned_cols=70 Identities=20% Similarity=0.127 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHh-cc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHH
Q 003035 749 QALNNLGSIYVECG---KLDQAENCYINALD-IK---HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFE 818 (855)
Q Consensus 749 ~a~~~LG~~y~~~g---~~~~A~~~~~kAL~-~~---~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~ 818 (855)
+..+++++++.... +..+.+.+++..++ .+ .-...+.|+..+++.|+|++++.+.+..++..|+|..+..
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 77888888888654 67888999999997 22 4567888999999999999999999999999999988754
No 353
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=88.39 E-value=1.2e+02 Score=41.58 Aligned_cols=113 Identities=19% Similarity=0.095 Sum_probs=68.5
Q ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCchhHHHHHHHHHHHhc-CCCCCCCH-
Q 003035 670 SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALR-CPSDGLRK- 747 (855)
Q Consensus 670 ~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~-~~~~~~~p- 747 (855)
+..-++.|...|.+....|+++.|....-+|.+..+ .+++...|..+..+|+-..|+.. +++.+. +..+-..|
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~-~~i~~E~AK~lW~~gd~~~Al~~----Lq~~l~~~~~~~~~~~ 1740 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL-PEIVLERAKLLWQTGDELNALSV----LQEILSKNFPDLHTPY 1740 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc-chHHHHHHHHHHhhccHHHHHHH----HHHHHHhhcccccCCc
Confidence 344567777788888888888888777777766652 26777778888888888888887 777763 22221111
Q ss_pred ----H--------HHHHHHHHHHHHcCC--HHHHHHHHHHHHhcc--cHHHHHHHH
Q 003035 748 ----G--------QALNNLGSIYVECGK--LDQAENCYINALDIK--HTRAHQGLA 787 (855)
Q Consensus 748 ----~--------~a~~~LG~~y~~~g~--~~~A~~~~~kAL~~~--~~~a~~~lg 787 (855)
. .+...++......|+ .+.-++.|+.+.++. ....|+.+|
T Consensus 1741 ~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1741 TDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred cccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 1 233334444444444 334456777777766 333444444
No 354
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=87.85 E-value=12 Score=41.41 Aligned_cols=25 Identities=16% Similarity=-0.016 Sum_probs=14.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 003035 643 RFRQSLLLLRLNCQKAAMRCLRLAR 667 (855)
Q Consensus 643 ~~~~a~~l~~~g~~~~A~~~l~~al 667 (855)
++...+.+..++++++|.+.-+..+
T Consensus 129 ~lLv~Lfl~d~K~~kea~~~~~~~l 153 (493)
T KOG2581|consen 129 YLLVLLFLIDQKEYKEADKISDALL 153 (493)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3344444556677777776655544
No 355
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.81 E-value=3.7 Score=41.48 Aligned_cols=53 Identities=17% Similarity=0.055 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHCCCHHHH
Q 003035 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS----EHERLVYEGWILYDTGHREEA 693 (855)
Q Consensus 640 ~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~----~~~~~~~lg~~~~~~g~~~eA 693 (855)
+.+.+.+|-.|. ..+.++|+..+.+++++.+. +++.+..|+.+++.+|+++.|
T Consensus 141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 444444443333 33445555555555544322 244445555555555555444
No 356
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.66 E-value=15 Score=41.00 Aligned_cols=164 Identities=16% Similarity=0.061 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCchhHHHHHHHHHH
Q 003035 657 KAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEE 736 (855)
Q Consensus 657 ~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~~a~~~lg~~~~~~g~~~~A~~~~~~lle~ 736 (855)
+++++.-.+.+..+|+...+|+..=.++...... .+..|.- .+...++-+.. .+.
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~----------~~~~~~e-----------k~~~ld~eL~~----~~~ 100 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTR----------AQLEPLE-----------KQALLDEELKY----VES 100 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhh----------hcCCHHH-----------HHHhhHHHHHH----HHH
Confidence 4566666677777777777775543333221100 0222211 11134566666 888
Q ss_pred HhcCCCCCCCHH--HHHHHHHHHHHHcC--CHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcC----CHHHHHHHHHHH
Q 003035 737 ALRCPSDGLRKG--QALNNLGSIYVECG--KLDQAENCYINALDIK--HTRAHQGLARVYYLKN----ELKAAYDEMTKL 806 (855)
Q Consensus 737 al~~~~~~~~p~--~a~~~LG~~y~~~g--~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g----~~~~A~~~~~ka 806 (855)
++ ..+|+ .+|+.+.+++.+.+ ++..=++..+++++.+ +..++...=++..... ...+=+++.+++
T Consensus 101 ~L-----~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~ 175 (421)
T KOG0529|consen 101 AL-----KVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKL 175 (421)
T ss_pred HH-----HhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHH
Confidence 88 88888 99999999999887 4788899999999999 6666666555555443 256677888999
Q ss_pred HHHccCCHHHHHHHhh----------cCC------HHHHHHHHHHHHhcCCCCcccchhh
Q 003035 807 LEKAQYSASAFEKRSE----------YSD------REMAKNDLNMATQLDPLRTYPYRYR 850 (855)
Q Consensus 807 l~~~p~~~~a~~~lg~----------~g~------~eeA~~~~~kAl~l~P~~~~~~~~~ 850 (855)
|.-++.|-.+|.++.. .|+ ...-..+...|+-.||+|...|-|+
T Consensus 176 I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~ 235 (421)
T KOG0529|consen 176 INDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYH 235 (421)
T ss_pred HhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeeh
Confidence 9999999999999988 342 2344566677888899998888774
No 357
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=87.59 E-value=22 Score=39.82 Aligned_cols=96 Identities=14% Similarity=0.029 Sum_probs=47.9
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhccCC-h--HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcC-CCC--CCCHHHHH
Q 003035 678 VYEGWILYDTGHREEALSRAEKSISIERT-F--EAFFLKAYILADTNLDPESSTYVIQLLEEALRC-PSD--GLRKGQAL 751 (855)
Q Consensus 678 ~~lg~~~~~~g~~~eAl~~~~kal~~~p~-~--~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~-~~~--~~~p~~a~ 751 (855)
+.....+.+.|-+..|++..+-.+.++|. + .+.+.+-..-.+.++++--+.. ++..... ..+ ..-|+ .-
T Consensus 107 ~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~----~~~~~~~~~~~~~~~lPn-~a 181 (360)
T PF04910_consen 107 FRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDF----SESPLAKCYRNWLSLLPN-FA 181 (360)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHH----HHhHhhhhhhhhhhhCcc-HH
Confidence 34445555666666666666666666666 3 4444444444444555433333 4433310 000 01222 23
Q ss_pred HHHHHHHHHcCCH---------------HHHHHHHHHHHhcc
Q 003035 752 NNLGSIYVECGKL---------------DQAENCYINALDIK 778 (855)
Q Consensus 752 ~~LG~~y~~~g~~---------------~~A~~~~~kAL~~~ 778 (855)
+.++.++...++- ++|...+++|+...
T Consensus 182 ~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 182 FSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred HHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 3344445555554 77777777777654
No 358
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=87.38 E-value=71 Score=38.04 Aligned_cols=112 Identities=18% Similarity=0.192 Sum_probs=71.1
Q ss_pred HHhhcccccchhhHHHHHHHHhh---------c---hhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhcchhhhh
Q 003035 388 SQVAMEKDRVSNTTVMLLERLGE---------C---STERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLA 455 (855)
Q Consensus 388 a~~~~~~~~~~~~a~~~le~~~~---------~---~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~~~a~~ 455 (855)
-..|++.++ .+-|+++..++-+ . +.++..+.+|+..+|..+.++.++++|.++|.+.-. ..
T Consensus 754 ek~yld~dr-rDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------~e 826 (1189)
T KOG2041|consen 754 EKLYLDADR-RDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------TE 826 (1189)
T ss_pred hhhhhccch-hhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------hH
Confidence 345555555 6777777666533 1 445556778999999999999999999999976422 12
Q ss_pred hHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHhhccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHH
Q 003035 456 GLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAI 535 (855)
Q Consensus 456 ~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~~~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~ 535 (855)
+.+.++++..++. . ++....--|++....-.+|.++...|.-++|.
T Consensus 827 ~~~ecly~le~f~----~------------------------------LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV 872 (1189)
T KOG2041|consen 827 NQIECLYRLELFG----E------------------------------LEVLARTLPEDSELLPVMADMFTSVGMCDQAV 872 (1189)
T ss_pred hHHHHHHHHHhhh----h------------------------------HHHHHHhcCcccchHHHHHHHHHhhchHHHHH
Confidence 3344444443332 1 33333334555555556777888888888887
Q ss_pred HHHHH
Q 003035 536 SEIDR 540 (855)
Q Consensus 536 ~~~~k 540 (855)
+.|-+
T Consensus 873 ~a~Lr 877 (1189)
T KOG2041|consen 873 EAYLR 877 (1189)
T ss_pred HHHHh
Confidence 65533
No 359
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=87.13 E-value=6.5 Score=37.97 Aligned_cols=101 Identities=9% Similarity=-0.066 Sum_probs=73.7
Q ss_pred CCCCc-EEEEEcCeEEEeeehhhhcCCHHHHHhhcCCCccCC----CCeeEecCCCCCHHHHHHHHHHhccCCCCCCCHH
Q 003035 215 EEDDS-VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESK----RKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPG 289 (855)
Q Consensus 215 ~~~~~-V~f~v~~~~~~aHr~vLaa~S~~F~~mf~~~~~E~~----~~~I~l~~~~is~~~~~~ll~y~YTg~l~~~~~~ 289 (855)
+..+. |.|.|||..|-.-|.-|.--+.-|..-|-..-.+.. ..---+ -|-+|.-|-.+|+|+..|++- ++.-
T Consensus 17 ~g~s~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYl--IDRDP~~FgpvLNylRhgklv-l~~l 93 (210)
T KOG2715|consen 17 NGVSLWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYL--IDRDPFYFGPVLNYLRHGKLV-LNKL 93 (210)
T ss_pred CCceEEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceE--eccCcchHHHHHHHHhcchhh-hhhh
Confidence 33344 999999999999999998888677666644322221 112233 366899999999999999998 6663
Q ss_pred HHHHHHHHhchhChHHHHHHHHHHHHhhc
Q 003035 290 IVLELLSFANRFCCEEMKSACDAHLASLV 318 (855)
Q Consensus 290 ~~~~ll~~A~~~~~~~Lk~~C~~~l~~~l 318 (855)
.-..+|.=|++|.++.|.+...+.|....
T Consensus 94 ~eeGvL~EAefyn~~~li~likd~i~dRd 122 (210)
T KOG2715|consen 94 SEEGVLEEAEFYNDPSLIQLIKDRIQDRD 122 (210)
T ss_pred hhhccchhhhccCChHHHHHHHHHHHHHh
Confidence 44458889999999998887777666543
No 360
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=87.12 E-value=0.69 Score=50.03 Aligned_cols=85 Identities=13% Similarity=0.051 Sum_probs=61.4
Q ss_pred EEEEE-cCeEEEeeehhhhcCCHHHHHhhcCCCccCCCCeeEecCCCCCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHh
Q 003035 220 VTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLELLSFA 298 (855)
Q Consensus 220 V~f~v-~~~~~~aHr~vLaa~S~~F~~mf~~~~~E~~~~~I~l~~~~is~~~~~~ll~y~YTg~l~~~~~~~~~~ll~~A 298 (855)
++|.+ +|+.|-|||..|++||.+|..-+..-+. ...+|+= ..+-+.+|..+++|+|-+.-. +-++.--+|+.+.
T Consensus 152 i~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~--~~heI~~--~~v~~~~f~~flk~lyl~~na-~~~~qynallsi~ 226 (516)
T KOG0511|consen 152 IDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYV--QGHEIEA--HRVILSAFSPFLKQLYLNTNA-EWKDQYNALLSIE 226 (516)
T ss_pred hHHHhhccccccHHHHHHHhhhcccCchhhhhcc--ccCchhh--hhhhHhhhhHHHHHHHHhhhh-hhhhHHHHHHhhh
Confidence 78887 6888999999999999987654432221 2234543 466789999999999976322 3344557889999
Q ss_pred chhChHHHHHH
Q 003035 299 NRFCCEEMKSA 309 (855)
Q Consensus 299 ~~~~~~~Lk~~ 309 (855)
.+|+++.|...
T Consensus 227 ~kF~~e~l~~~ 237 (516)
T KOG0511|consen 227 VKFSKEKLSLE 237 (516)
T ss_pred hhccHHHhHHH
Confidence 99998876543
No 361
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=87.11 E-value=5.4 Score=37.55 Aligned_cols=71 Identities=15% Similarity=0.113 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHcCC---HHHHHHHHHHHHh-cCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHH
Q 003035 640 SFLRFRQSLLLLRLNC---QKAAMRCLRLARN-HSSS-EHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAF 710 (855)
Q Consensus 640 ~~~~~~~a~~l~~~g~---~~~A~~~l~~al~-~~p~-~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~ 710 (855)
....|.+|+.+.+..+ ..+.+..++..++ -.|. .-+-.++|+.-+++.|+|+.++++.+..++..|++ ++.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 3456677777665433 4566777777775 3333 23455777777888888888888887777777776 443
No 362
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.94 E-value=25 Score=40.84 Aligned_cols=149 Identities=17% Similarity=0.057 Sum_probs=94.2
Q ss_pred hhcHHHHHHHHHHHHHh--------------cchhhhhhHHHHHHHhCChHHHHHHHHhHHHc-----------------
Q 003035 432 REEYKDACYYFEAAADA--------------GHIYSLAGLARAKYKVGQQYSAYKLINSIISE----------------- 480 (855)
Q Consensus 432 ~g~~~eA~~~~~~Al~~--------------~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~----------------- 480 (855)
..-|++|+..|.-|+.. -|..++..+|.+...+|+.+-|-+.+.+.+=.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34566777777766643 23456677777777778777777776665411
Q ss_pred ----CCCchHHHH-------HHhhccCcchHHHHHHHHHHhCCC-CchhHHHHHHHHH-HhCCHHHHHHHHHHH-----H
Q 003035 481 ----HKPTGWMYQ-------ERSLYNLGREKIVDLNYASELDPT-LSFPYKYRAVAKM-EEGQIRAAISEIDRI-----I 542 (855)
Q Consensus 481 ----~p~~~~~y~-------~~~~~~~~~~A~~~l~~a~~ldP~-~~~a~~~~a~~~~-~~~~~~~A~~~~~k~-----l 542 (855)
+|.|-..|. ....-+...-|++.-.-.+.+||. ++.+..+...+|. ...+|+=-|..++.. +
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l 410 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL 410 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence 122222221 112235667899999999999999 8887666666553 455555555555444 2
Q ss_pred ccCCCHhHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCc
Q 003035 543 VFKLSVDCLELRAWLFIAADD---YESALRDTLALLALESN 580 (855)
Q Consensus 543 ~~~p~~~~l~lra~~y~~~gd---~~~A~~~~~~aL~~~P~ 580 (855)
..-|+...-...|.+|....+ -..|...+.+|+...|.
T Consensus 411 ~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 411 SQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred hhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 233544433445777776665 68899999999998884
No 363
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.92 E-value=67 Score=37.26 Aligned_cols=272 Identities=17% Similarity=0.078 Sum_probs=147.6
Q ss_pred HHHHhCChHHHHHHHHhHHHcCCCchHH--------HHHHhhc-----cCcchHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 003035 460 AKYKVGQQYSAYKLINSIISEHKPTGWM--------YQERSLY-----NLGREKIVDLNYASELDPTLSFPYKYRAVAKM 526 (855)
Q Consensus 460 ~~~~~g~~~~A~~~l~~~i~~~p~~~~~--------y~~~~~~-----~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~ 526 (855)
+.-..|..++....+..+....+..+-. |+....+ -+.....+.+.+..+..|.++.-..+.|.++.
T Consensus 199 vvgf~g~r~egl~~Lw~~a~~~s~~~~i~~l~L~~y~~~~~~~~~~p~~d~~~~~~~Ll~~~~~~p~ga~wll~~ar~l~ 278 (546)
T KOG3783|consen 199 VVGFSGDRDEGLRLLWEAAKQRNFRGAIALLALLCYYQFISFVLGTPNPDGEECEKALKKYRKRYPKGALWLLMEARILS 278 (546)
T ss_pred HHhhcccHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHhHHHHHhCCCCccHHHHHHHHHH
Confidence 3344566667766666665544332211 1111111 12234455567777889999998899999999
Q ss_pred HhCCHHHHHHHHHHHHccCCCH-----hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHH---HH
Q 003035 527 EEGQIRAAISEIDRIIVFKLSV-----DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKL---LN 598 (855)
Q Consensus 527 ~~~~~~~A~~~~~k~l~~~p~~-----~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~l---l~ 598 (855)
-.|+.+.|+..++..+. +.. -++.-+|+++..+.+|..|-.++..+..+......++.-..+..+..- ..
T Consensus 279 ~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~Yfa~cc~l~~~~~~q 356 (546)
T KOG3783|consen 279 IKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYTYFAGCCLLQNWEVNQ 356 (546)
T ss_pred HcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHHHHHHHHHhccHHHHH
Confidence 88998888998888886 332 245568999999999999999988887765543322221111111100 00
Q ss_pred HHhhccChhhhHHH----Hhhhcccc--cccchHHHHHHHHHcCC----------CChHHHHHHHHHHHHcCCHHHHHHH
Q 003035 599 HHVRSWSPADCWIK----LYDRWSSV--DDIGSLAVINQMLINDP----------GKSFLRFRQSLLLLRLNCQKAAMRC 662 (855)
Q Consensus 599 ~~~~~~~~a~~~~~----~~~~~~~~--~d~~al~~~~~~l~~~p----------~~~~~~~~~a~~l~~~g~~~~A~~~ 662 (855)
...++-+.+..+.+ +......- -+......+++.....| -...+|+..|.-.+..++..+....
T Consensus 357 ~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~k~~~~ 436 (546)
T KOG3783|consen 357 GAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYFWNGFSRMSKNELEKMRAE 436 (546)
T ss_pred hcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchHHHHHHHHhhcccCChhhHHHHHHH
Confidence 00001011110000 00000000 00001112223333332 1112222222211222222222222
Q ss_pred HHHHHhc-CCCcHH-HHHHHHHHHHHCCCHHHHHHHHHHHHhc----cCCh----HHHHHHHHHHHHCCC-CchhHHHHH
Q 003035 663 LRLARNH-SSSEHE-RLVYEGWILYDTGHREEALSRAEKSISI----ERTF----EAFFLKAYILADTNL-DPESSTYVI 731 (855)
Q Consensus 663 l~~al~~-~p~~~~-~~~~lg~~~~~~g~~~eAl~~~~kal~~----~p~~----~a~~~lg~~~~~~g~-~~~A~~~~~ 731 (855)
++. -+. ++++.- -++.+|.++..+|+...|...|...++. ..+. .++|.+|..+.+++. ..++...
T Consensus 437 ~~~-~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~-- 513 (546)
T KOG3783|consen 437 LEN-PKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARAL-- 513 (546)
T ss_pred Hhc-cCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHH--
Confidence 211 112 333322 2467899999999999999999888732 2221 889999999999988 8888888
Q ss_pred HHHHHHh
Q 003035 732 QLLEEAL 738 (855)
Q Consensus 732 ~lle~al 738 (855)
+.+|-
T Consensus 514 --L~kAr 518 (546)
T KOG3783|consen 514 --LLKAR 518 (546)
T ss_pred --HHHHH
Confidence 99998
No 364
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=86.80 E-value=18 Score=41.67 Aligned_cols=155 Identities=17% Similarity=0.086 Sum_probs=89.7
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHH-HHHHHHHHHHCCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCchhHHH
Q 003035 651 LRLNCQKAAMRCLRLARNHSSSEHER-LVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTY 729 (855)
Q Consensus 651 ~~~g~~~~A~~~l~~al~~~p~~~~~-~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~~a~~~lg~~~~~~g~~~~A~~~ 729 (855)
+-.|+++++++..+. -++-|.-+.- ...++..+..+|..+.|+... .+....|.+| .+.|+.+.|.+.
T Consensus 272 v~~~d~~~v~~~i~~-~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~-------~D~~~rFeLA---l~lg~L~~A~~~ 340 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAA-SNLLPNIPKDQGQSIARFLEKKGYPELALQFV-------TDPDHRFELA---LQLGNLDIALEI 340 (443)
T ss_dssp HHTT-HHH-----HH-HHTGGG--HHHHHHHHHHHHHTT-HHHHHHHS-------S-HHHHHHHH---HHCT-HHHHHHH
T ss_pred HHcCChhhhhhhhhh-hhhcccCChhHHHHHHHHHHHCCCHHHHHhhc-------CChHHHhHHH---HhcCCHHHHHHH
Confidence 346788887777742 2333443333 456777788889888887653 2224455544 466777777776
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 003035 730 VIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEK 809 (855)
Q Consensus 730 ~~~lle~al~~~~~~~~p~~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~ 809 (855)
|. .++....|..||.....+|+++-|.+||+++-. +..|..+|...|+.++=.++.+.+.+.
T Consensus 341 -------a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 341 -------AK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp -------CC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred -------HH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 22 333338999999999999999999999988743 446777788888876555555444433
Q ss_pred ccCCHHHHHHHhh-cCCHHHHHHHHHHH
Q 003035 810 AQYSASAFEKRSE-YSDREMAKNDLNMA 836 (855)
Q Consensus 810 ~p~~~~a~~~lg~-~g~~eeA~~~~~kA 836 (855)
. +...-..-+. .|+.++.+..+.++
T Consensus 403 ~--~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 403 G--DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp T---HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred c--CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2 2333233333 67777777666543
No 365
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=86.37 E-value=21 Score=41.87 Aligned_cols=46 Identities=24% Similarity=0.225 Sum_probs=28.3
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhccCCh--HHHHHHHHHHHHCCCCchhHHH
Q 003035 680 EGWILYDTGHREEALSRAEKSISIERTF--EAFFLKAYILADTNLDPESSTY 729 (855)
Q Consensus 680 lg~~~~~~g~~~eAl~~~~kal~~~p~~--~a~~~lg~~~~~~g~~~~A~~~ 729 (855)
+.+++...+++++|.+..++ .|++ +.|+-.|..+....++++|.+.
T Consensus 779 iVqlHve~~~W~eAFalAe~----hPe~~~dVy~pyaqwLAE~DrFeEAqkA 826 (1081)
T KOG1538|consen 779 LVQLHVETQRWDEAFALAEK----HPEFKDDVYMPYAQWLAENDRFEEAQKA 826 (1081)
T ss_pred HhhheeecccchHhHhhhhh----CccccccccchHHHHhhhhhhHHHHHHH
Confidence 34555666777777666554 3444 5566666666666666666666
No 366
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=86.30 E-value=4.3 Score=34.46 Aligned_cols=60 Identities=20% Similarity=0.218 Sum_probs=40.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH---HHHHHCCCHHHHHHHHHHHHh
Q 003035 643 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEG---WILYDTGHREEALSRAEKSIS 702 (855)
Q Consensus 643 ~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg---~~~~~~g~~~eAl~~~~kal~ 702 (855)
+...|+-++.+++.++|+...+++++..++.++.+..+| .+|.+.|+|.+.+++.-+=+.
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677788888888888888887777666655444 566677777777766544433
No 367
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=86.21 E-value=4.9 Score=35.46 Aligned_cols=62 Identities=16% Similarity=0.165 Sum_probs=40.6
Q ss_pred HHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 003035 717 LADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK 778 (855)
Q Consensus 717 ~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~ 778 (855)
....|++.+|.+.+.+.|+.+........... .+..++|.++...|++++|++.+++|+++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34567777777774444444431111110011 667788999999999999999999999876
No 368
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=86.04 E-value=7.9 Score=44.07 Aligned_cols=79 Identities=6% Similarity=-0.010 Sum_probs=50.8
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhccCCh
Q 003035 629 INQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGH-REEALSRAEKSISIERTF 707 (855)
Q Consensus 629 ~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~-~~eAl~~~~kal~~~p~~ 707 (855)
+..++...+.|..+|......-.+.+.+.+--..|.+++..+|++++.|..-+.-.+.-+. .+.|.+.+.++++.+|+.
T Consensus 94 yr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npds 173 (568)
T KOG2396|consen 94 YRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDS 173 (568)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCC
Confidence 4445555666666666555444444446666677777777777777777666655555444 677777777777777765
No 369
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=85.80 E-value=6.3 Score=36.28 Aligned_cols=102 Identities=18% Similarity=0.099 Sum_probs=71.0
Q ss_pred EEEEE-cCeEEEeeehhhhcCCHHHHHhhcCCCccCCCCeeEecCCCCCHHHHHHHHHHhcc--CCCCC-----------
Q 003035 220 VTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRT--SRVDL----------- 285 (855)
Q Consensus 220 V~f~v-~~~~~~aHr~vLaa~S~~F~~mf~~~~~E~~~~~I~l~~~~is~~~~~~ll~y~YT--g~l~~----------- 285 (855)
|.++. +|+.|.+.+. +|-||--.+.|+.. +.+.. -.|.. ++|+..+|+.+++|+-. +.+..
T Consensus 4 i~l~s~dge~F~vd~~-iAerSiLikN~l~d-~~~~n-~p~p~--pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~ 78 (158)
T COG5201 4 IELESIDGEIFRVDEN-IAERSILIKNMLCD-STACN-YPIPA--PNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSK 78 (158)
T ss_pred eEEEecCCcEEEehHH-HHHHHHHHHHHhcc-ccccC-CCCcc--cchhHHHHHHHHHHHHhccccCCCccChHhhhccC
Confidence 55554 6777776654 56788888888752 22221 23555 89999999999999942 22211
Q ss_pred -----------CCHHHHHHHHHHhchhChHHHHHHHHHHHHhhcC--ChhhHHH
Q 003035 286 -----------FCPGIVLELLSFANRFCCEEMKSACDAHLASLVG--DIEDALI 326 (855)
Q Consensus 286 -----------~~~~~~~~ll~~A~~~~~~~Lk~~C~~~l~~~l~--~~~n~~~ 326 (855)
++.+.++++.-+||.+.+..|...|+..+...+. |++....
T Consensus 79 p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemirgkSpeeir~ 132 (158)
T COG5201 79 PSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIRGKSPEEIRE 132 (158)
T ss_pred CccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHccCCHHHHHH
Confidence 3346688999999999999999999999988886 3444433
No 370
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=85.63 E-value=82 Score=37.02 Aligned_cols=166 Identities=11% Similarity=-0.005 Sum_probs=96.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh--HHHHHHHHHHHHCCCCch
Q 003035 648 LLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF--EAFFLKAYILADTNLDPE 725 (855)
Q Consensus 648 ~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~--~a~~~lg~~~~~~g~~~~ 725 (855)
......|+++...-.|+.++---....+.|...+.-....|+.+-|-..+..+.++.-.. .....-+..-...|++..
T Consensus 305 df~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~ 384 (577)
T KOG1258|consen 305 DFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDD 384 (577)
T ss_pred hhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHH
Confidence 334566777777777777766666666777766666666677777777777776665433 445555555566677777
Q ss_pred hHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHH---HHHHHHhcc-----cHHHHHHHHHHHHH-cC
Q 003035 726 SSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAEN---CYINALDIK-----HTRAHQGLARVYYL-KN 794 (855)
Q Consensus 726 A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~---~~~kAL~~~-----~~~a~~~lg~~~~~-~g 794 (855)
|... |++.. .-.|+ .+-.....+....|+.+.+.. .+.....-. ....+..+++.... .+
T Consensus 385 A~~~----lq~i~-----~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~ 455 (577)
T KOG1258|consen 385 AKVI----LQRIE-----SEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIRE 455 (577)
T ss_pred HHHH----HHHHH-----hhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhc
Confidence 7777 77666 33355 222223333445566666652 222222211 22334444543333 45
Q ss_pred CHHHHHHHHHHHHHHccCCHHHHHHHhh
Q 003035 795 ELKAAYDEMTKLLEKAQYSASAFEKRSE 822 (855)
Q Consensus 795 ~~~~A~~~~~kal~~~p~~~~a~~~lg~ 822 (855)
+.+.|...+.++++..|++-..|..+..
T Consensus 456 d~~~a~~~l~~~~~~~~~~k~~~~~~~~ 483 (577)
T KOG1258|consen 456 DADLARIILLEANDILPDCKVLYLELIR 483 (577)
T ss_pred CHHHHHHHHHHhhhcCCccHHHHHHHHH
Confidence 6777777777777777777666665555
No 371
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=85.52 E-value=2.5 Score=47.99 Aligned_cols=82 Identities=15% Similarity=0.019 Sum_probs=69.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHC---CCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHH
Q 003035 653 LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDT---GHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESST 728 (855)
Q Consensus 653 ~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~---g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~ 728 (855)
.+....|+..|.++++..|.....+.+.+.+++.. |+.-.|+.....|++++|.. .+++.++.++...+++.+|++
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~ 466 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALS 466 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhh
Confidence 34467788889999999999988888888888764 57778888889999999998 999999999999999999998
Q ss_pred HHHHHHHHHh
Q 003035 729 YVIQLLEEAL 738 (855)
Q Consensus 729 ~~~~lle~al 738 (855)
. ...+.
T Consensus 467 ~----~~alq 472 (758)
T KOG1310|consen 467 C----HWALQ 472 (758)
T ss_pred h----HHHHh
Confidence 8 66666
No 372
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=85.40 E-value=59 Score=35.24 Aligned_cols=29 Identities=14% Similarity=0.163 Sum_probs=18.8
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCCCc
Q 003035 816 AFEKRSEYSDREMAKNDLNMATQLDPLRT 844 (855)
Q Consensus 816 a~~~lg~~g~~eeA~~~~~kAl~l~P~~~ 844 (855)
.-..+|...--..|++.+.+|.+-||.-+
T Consensus 368 ~asrRGLS~AE~~AvEAihRAvEFNPHVP 396 (556)
T KOG3807|consen 368 TASRRGLSTAEINAVEAIHRAVEFNPHVP 396 (556)
T ss_pred hhhhccccHHHHHHHHHHHHHhhcCCCCc
Confidence 33344442223468889999999999754
No 373
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=85.07 E-value=1.1 Score=32.49 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=26.5
Q ss_pred HHHHHhhhhHhhhhcHHHHHHHHHHHHHhc
Q 003035 420 LALHQLGCVMFEREEYKDACYYFEAAADAG 449 (855)
Q Consensus 420 ~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~ 449 (855)
.++..||.+-+..++|++|+.-|++++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 367789999999999999999999999763
No 374
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.17 E-value=6.6 Score=38.28 Aligned_cols=68 Identities=13% Similarity=0.010 Sum_probs=54.8
Q ss_pred chHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCC-CHhHHHHHHHHHHHcCCHH
Q 003035 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYE 565 (855)
Q Consensus 498 ~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p-~~~~l~lra~~y~~~gd~~ 565 (855)
+++...+...--+.|..+..-..-|.+++..|++.+|+..++.+..-.| .+-+-.+++.++..+||.+
T Consensus 27 ~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 27 DDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 4444556666677888888888999999999999999999999888777 4666677888888888854
No 375
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=84.02 E-value=24 Score=41.08 Aligned_cols=120 Identities=15% Similarity=-0.007 Sum_probs=90.1
Q ss_pred HHHHHHHHHhccCCh-HH---HHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHH
Q 003035 693 ALSRAEKSISIERTF-EA---FFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQ 766 (855)
Q Consensus 693 Al~~~~kal~~~p~~-~a---~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~ 766 (855)
++..+...+.++|.+ +. .+ +...+...+....+... +...+ ..+|. .+..+||......|..-.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~-lsi~~~~~~~~~~~~~~----~~~~l-----~~~~~~~~~~~~L~~ale~~~~~~~ 119 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAF-LSILLAPLADSTLAFLA----KRIPL-----SVNPENCPAVQNLAAALELDGLQFL 119 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHH-HHhhccccccchhHHHH----HhhhH-----hcCcccchHHHHHHHHHHHhhhHHH
Confidence 666666667777766 33 33 67778888888888888 88888 77777 889999998888877666
Q ss_pred HHHHHHH-HHhcc--cHHHHH------HHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh
Q 003035 767 AENCYIN-ALDIK--HTRAHQ------GLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE 822 (855)
Q Consensus 767 A~~~~~k-AL~~~--~~~a~~------~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~ 822 (855)
+...+.. +.... +..... .+|......|+..++....++++.+.|+++...-.+..
T Consensus 120 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~ 184 (620)
T COG3914 120 ALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMT 184 (620)
T ss_pred HHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHH
Confidence 6655554 66655 444433 35999999999999999999999999999776555444
No 376
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=83.80 E-value=85 Score=35.72 Aligned_cols=199 Identities=16% Similarity=0.088 Sum_probs=114.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCchhhhhccc-chhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHH
Q 003035 555 AWLFIAADDYESALRDTLALLALESNYMMFHGRV-SGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQML 633 (855)
Q Consensus 555 a~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~-~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l 633 (855)
-....+.++...|-+.+.-...++|+......-+ ....+...+-+.-.++.....++.+++...+. |++.-..++.
T Consensus 305 Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~-DiDrqQLvh~-- 381 (549)
T PF07079_consen 305 LSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSY-DIDRQQLVHY-- 381 (549)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhh-cccHHHHHHH--
Confidence 3456788999999999999999999875322111 11222222222222222333333333322111 1111111111
Q ss_pred HcCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHH--H------HHH---H
Q 003035 634 INDPGKSFLRFRQSLLLLRLNC-QKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSR--A------EKS---I 701 (855)
Q Consensus 634 ~~~p~~~~~~~~~a~~l~~~g~-~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~--~------~ka---l 701 (855)
.+.-|.-+-+.|. -++|++.++.+++..|.+-+..... ..+-...|.+|++. + +.. +
T Consensus 382 ---------L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v--~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~ 450 (549)
T PF07079_consen 382 ---------LVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIV--FLFVKQAYKQALSMHAIPRLLKLEDFITEV 450 (549)
T ss_pred ---------HHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHH--HHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 2233444556665 8899999999999998876544211 11111222332211 1 111 1
Q ss_pred hccCC---h-HHHHHHH--HHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003035 702 SIERT---F-EAFFLKA--YILADTNLDPESSTYVIQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINA 774 (855)
Q Consensus 702 ~~~p~---~-~a~~~lg--~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~-~a~~~LG~~y~~~g~~~~A~~~~~kA 774 (855)
.+.|- + +.-+.++ .-++.+|+|.++.-+ -.-.. ++.|. .++..+|.+.....+|++|.+++.+.
T Consensus 451 gl~~i~i~e~eian~LaDAEyLysqgey~kc~~y----s~WL~-----~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 451 GLTPITISEEEIANFLADAEYLYSQGEYHKCYLY----SSWLT-----KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred CCCcccccHHHHHHHHHHHHHHHhcccHHHHHHH----HHHHH-----HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 22232 2 4444554 447889999999988 55556 67788 99999999999999999999999765
Q ss_pred Hh
Q 003035 775 LD 776 (855)
Q Consensus 775 L~ 776 (855)
--
T Consensus 522 P~ 523 (549)
T PF07079_consen 522 PP 523 (549)
T ss_pred CC
Confidence 44
No 377
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=83.57 E-value=1e+02 Score=36.33 Aligned_cols=161 Identities=13% Similarity=-0.000 Sum_probs=111.9
Q ss_pred HHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-
Q 003035 630 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHS-SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF- 707 (855)
Q Consensus 630 ~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~-p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~- 707 (855)
...+---......|++.+..+...|+.+-|-..+..+.++. |+.+.....-+.+-...|+++.|..++++..+-.|..
T Consensus 321 ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v 400 (577)
T KOG1258|consen 321 ERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLV 400 (577)
T ss_pred HHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchh
Confidence 34444444556677788887888899999988888887764 7777888888888889999999999999999888888
Q ss_pred HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH---HHHHHHHHH-HHHcCCHHHHHHHHHHHHhcc--cHH
Q 003035 708 EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG---QALNNLGSI-YVECGKLDQAENCYINALDIK--HTR 781 (855)
Q Consensus 708 ~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~---~a~~~LG~~-y~~~g~~~~A~~~~~kAL~~~--~~~ 781 (855)
.+-.........+|+.+.+... -+++.... .....++ ..+.+.+.. +.-.++.+.|...+.+++++. +..
T Consensus 401 ~~~l~~~~~e~r~~~~~~~~~~-~~l~s~~~---~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~ 476 (577)
T KOG1258|consen 401 EVVLRKINWERRKGNLEDANYK-NELYSSIY---EGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKV 476 (577)
T ss_pred hhHHHHHhHHHHhcchhhhhHH-HHHHHHhc---ccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHH
Confidence 7777777777888888777732 01133332 1122222 344444444 344678999999999999988 555
Q ss_pred HHHHHHHHHHHcC
Q 003035 782 AHQGLARVYYLKN 794 (855)
Q Consensus 782 a~~~lg~~~~~~g 794 (855)
.+..+-.+...++
T Consensus 477 ~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 477 LYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHHhCC
Confidence 5555555555443
No 378
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=82.76 E-value=6.1 Score=33.55 Aligned_cols=62 Identities=18% Similarity=0.136 Sum_probs=49.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-H---HHHHHHHHHHHCCCCchhHHHHHHHHHHHh
Q 003035 677 LVYEGWILYDTGHREEALSRAEKSISIERTF-E---AFFLKAYILADTNLDPESSTYVIQLLEEAL 738 (855)
Q Consensus 677 ~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~---a~~~lg~~~~~~g~~~~A~~~~~~lle~al 738 (855)
....|.-++.+.+.++|+...+++++..++. . ++-.+..+|.+.|+|.+.++++++.++-|-
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ 74 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAE 74 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777889999999999999999998776 4 444556778999999999999776666665
No 379
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=82.15 E-value=42 Score=37.59 Aligned_cols=164 Identities=11% Similarity=0.123 Sum_probs=82.8
Q ss_pred ccchHHHHHHHHHcCCCChHHHHHHHHHHH-HcC-----------CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC
Q 003035 622 DIGSLAVINQMLINDPGKSFLRFRQSLLLL-RLN-----------CQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGH 689 (855)
Q Consensus 622 d~~al~~~~~~l~~~p~~~~~~~~~a~~l~-~~g-----------~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~ 689 (855)
+.+.+..-.+.++.+|+...+|...-.++. ++- -.++-+.+...+++.+|+...+|+.+.|++.+.+.
T Consensus 45 d~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~ 124 (421)
T KOG0529|consen 45 DEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPH 124 (421)
T ss_pred chHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCC
Confidence 345667777888888887776654333222 111 22333444455555555555555555555554443
Q ss_pred --HHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCHHH
Q 003035 690 --REEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQ 766 (855)
Q Consensus 690 --~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~~a~~~LG~~y~~~g~~~~ 766 (855)
+..-++..+++++.+|.+ .+|...=.+....... .....+
T Consensus 125 ~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~-------------------------------------~~~~~~ 167 (421)
T KOG0529|consen 125 SDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS-------------------------------------RNLEKE 167 (421)
T ss_pred chHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc-------------------------------------cccchh
Confidence 344455555555555544 3333332222221111 011233
Q ss_pred HHHHHHHHHhcc--cHHHHHHHHHHHHHc------CC------HHHHHHHHHHHHHHccCCHHHHHHHhh
Q 003035 767 AENCYINALDIK--HTRAHQGLARVYYLK------NE------LKAAYDEMTKLLEKAQYSASAFEKRSE 822 (855)
Q Consensus 767 A~~~~~kAL~~~--~~~a~~~lg~~~~~~------g~------~~~A~~~~~kal~~~p~~~~a~~~lg~ 822 (855)
=++...++|.-+ |..+|++...++... |+ ...-++.-..|+=.+|++.++|...-+
T Consensus 168 El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rW 237 (421)
T KOG0529|consen 168 ELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRW 237 (421)
T ss_pred HHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHH
Confidence 344555555555 666666665555421 21 223445555666667888777766555
No 380
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=82.14 E-value=42 Score=38.67 Aligned_cols=63 Identities=17% Similarity=0.083 Sum_probs=40.5
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCch
Q 003035 651 LRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPE 725 (855)
Q Consensus 651 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~~a~~~lg~~~~~~g~~~~ 725 (855)
++.|+.+.|.+..+ ..+++..|..||.....+|+++-|...|+++-. +-.+...|.-.|+.+.
T Consensus 329 l~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-------~~~L~lLy~~~g~~~~ 391 (443)
T PF04053_consen 329 LQLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD-------FSGLLLLYSSTGDREK 391 (443)
T ss_dssp HHCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT--------HHHHHHHHHHCT-HHH
T ss_pred HhcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-------ccccHHHHHHhCCHHH
Confidence 56777777765432 234677888888888888888888888877532 2345555666666544
No 381
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=81.23 E-value=2.5 Score=44.44 Aligned_cols=84 Identities=17% Similarity=0.167 Sum_probs=58.6
Q ss_pred EEEEEcCeEEEeeehhhhcCCH-HHHHhhcCCCccC---CCCeeEecCCCCCHHHHHHHHHHhccCCCCCCCHHHHHHHH
Q 003035 220 VTFCVRDKEISFVRNKIASLSS-PFKAMLYGGFVES---KRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLELL 295 (855)
Q Consensus 220 V~f~v~~~~~~aHr~vLaa~S~-~F~~mf~~~~~E~---~~~~I~l~~~~is~~~~~~ll~y~YTg~l~~~~~~~~~~ll 295 (855)
|+..|++-.|-..+.+|.+.-. -.-.||.+++.=. +..+.++. +||+..+|++||+|--||.+..-+.-.|-||-
T Consensus 98 ~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVA-dGi~s~vFRAILdYYksG~iRCP~~vSvpELr 176 (438)
T KOG3840|consen 98 VCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVA-DGMTSSCFRAILDYYQSGTMRCPSSVSVSELR 176 (438)
T ss_pred eEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehh-cchhHHHHHHHHHHHhcCceeCCCCCchHHHH
Confidence 8999999999999988865422 2345666654322 23356663 79999999999999999998854444555666
Q ss_pred HHhchhChH
Q 003035 296 SFANRFCCE 304 (855)
Q Consensus 296 ~~A~~~~~~ 304 (855)
.++|.++++
T Consensus 177 EACDYLlip 185 (438)
T KOG3840|consen 177 EACDYLLVP 185 (438)
T ss_pred hhcceEEee
Confidence 666665544
No 382
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=81.23 E-value=3 Score=44.08 Aligned_cols=60 Identities=17% Similarity=0.138 Sum_probs=55.0
Q ss_pred HHHHHhCCHHHHHHHHHHHHccCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchh
Q 003035 523 VAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYM 582 (855)
Q Consensus 523 ~~~~~~~~~~~A~~~~~k~l~~~p-~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~ 582 (855)
.+++..++++.|....++.+.++| ++..+.-+|.+|.++|-+..|++++...+...|+..
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~ 249 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDP 249 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCch
Confidence 478899999999999999999999 577777889999999999999999999999999865
No 383
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.16 E-value=53 Score=33.36 Aligned_cols=92 Identities=15% Similarity=0.112 Sum_probs=57.7
Q ss_pred HHHhHHHcCCCchHHHHHHhhccCcchHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhCCHHHHHHHHHHHHcc-----C
Q 003035 473 LINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLS--FPYKYRAVAKMEEGQIRAAISEIDRIIVF-----K 545 (855)
Q Consensus 473 ~l~~~i~~~p~~~~~y~~~~~~~~~~~A~~~l~~a~~ldP~~~--~a~~~~a~~~~~~~~~~~A~~~~~k~l~~-----~ 545 (855)
.+..-.+..++-...|......++ +.|...|.++ +-.|... ...+.+|..|. ..+.++|+..+.++++. +
T Consensus 99 ~L~~~tk~S~dP~llYy~Wsr~~d-~~A~~~fL~~-E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~ 175 (203)
T PF11207_consen 99 RLQEETKNSQDPYLLYYHWSRFGD-QEALRRFLQL-EGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDN 175 (203)
T ss_pred HHHHHHccCCCccHHHHHhhccCc-HHHHHHHHHH-cCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCC
Confidence 333333333333344444444433 4555555443 2344433 33455565555 78899999999999974 3
Q ss_pred CCHhHHHHHHHHHHHcCCHHHH
Q 003035 546 LSVDCLELRAWLFIAADDYESA 567 (855)
Q Consensus 546 p~~~~l~lra~~y~~~gd~~~A 567 (855)
++++.+..+|.+|.++|+++.|
T Consensus 176 ~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 176 FNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCHHHHHHHHHHHHHhcchhhh
Confidence 4578888889999999999987
No 384
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=80.22 E-value=1.4e+02 Score=35.76 Aligned_cols=88 Identities=10% Similarity=-0.053 Sum_probs=46.9
Q ss_pred cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH
Q 003035 669 HSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG 748 (855)
Q Consensus 669 ~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~ 748 (855)
.-|++.+.+-.+|..+..-|..++|.+.|-+- -.|.- + -......+++.+|.+. -++- .-|.
T Consensus 847 ~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~--s~pka-A----v~tCv~LnQW~~avel----aq~~-------~l~q 908 (1189)
T KOG2041|consen 847 TLPEDSELLPVMADMFTSVGMCDQAVEAYLRR--SLPKA-A----VHTCVELNQWGEAVEL----AQRF-------QLPQ 908 (1189)
T ss_pred hcCcccchHHHHHHHHHhhchHHHHHHHHHhc--cCcHH-H----HHHHHHHHHHHHHHHH----HHhc-------cchh
Confidence 34666777777777777777777777666432 11111 0 0112223344444444 1111 1122
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003035 749 --QALNNLGSIYVECGKLDQAENCYINA 774 (855)
Q Consensus 749 --~a~~~LG~~y~~~g~~~~A~~~~~kA 774 (855)
......+.-+...++.-+|++.+++|
T Consensus 909 v~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 909 VQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 23333445566778888888888887
No 385
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=80.11 E-value=7.5 Score=46.02 Aligned_cols=172 Identities=16% Similarity=0.117 Sum_probs=108.7
Q ss_pred hhcccccccchHHHHHHHHHcCCCC------hHHHHHHHHHHH---HcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Q 003035 615 DRWSSVDDIGSLAVINQMLINDPGK------SFLRFRQSLLLL---RLNCQKAAMRCLRLARNHS-SSEHERLVYEGWIL 684 (855)
Q Consensus 615 ~~~~~~~d~~al~~~~~~l~~~p~~------~~~~~~~a~~l~---~~g~~~~A~~~l~~al~~~-p~~~~~~~~lg~~~ 684 (855)
-.++.++|++++-.+-.-++.-|+- ..+.|..+..+- +-|+-+.|+...-.+++.. |-.++.+...|.+|
T Consensus 209 lSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIY 288 (1226)
T KOG4279|consen 209 LSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIY 288 (1226)
T ss_pred hhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceeeeechhh
Confidence 3344566666665555555555632 233344444444 3577888888777777654 55677777777777
Q ss_pred HH---------CCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 003035 685 YD---------TGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLG 755 (855)
Q Consensus 685 ~~---------~g~~~eAl~~~~kal~~~p~~~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~~a~~~LG 755 (855)
-+ .+..+.|+..|++|.+..|.-.+=.+++..+...|+.-+-... +++. -..|+
T Consensus 289 KDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~~Fens~E----lq~I-------------gmkLn 351 (1226)
T KOG4279|consen 289 KDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGEHFENSLE----LQQI-------------GMKLN 351 (1226)
T ss_pred hhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhhhccchHH----HHHH-------------HHHHH
Confidence 54 4667889999999999999876666778777777765444444 3322 24466
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCC
Q 003035 756 SIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS 813 (855)
Q Consensus 756 ~~y~~~g~~~~A~~~~~kAL~~~~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~ 813 (855)
.++.+.|.+++-.++++-+ .++. +-..-+|+.+|+..-+..++++|..
T Consensus 352 ~LlgrKG~leklq~YWdV~-------~y~~---asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 352 SLLGRKGALEKLQEYWDVA-------TYFE---ASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred HHhhccchHHHHHHHHhHH-------Hhhh---hhhhccCHHHHHHHHHHHhccCCce
Confidence 6667777766544443221 2221 1123478889999888888888764
No 386
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=79.78 E-value=3 Score=30.18 Aligned_cols=29 Identities=34% Similarity=0.473 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 003035 750 ALNNLGSIYVECGKLDQAENCYINALDIK 778 (855)
Q Consensus 750 a~~~LG~~y~~~g~~~~A~~~~~kAL~~~ 778 (855)
++..||.+-...++|++|++.|+++|++.
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666543
No 387
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.45 E-value=10 Score=36.42 Aligned_cols=68 Identities=16% Similarity=0.056 Sum_probs=55.2
Q ss_pred chHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCCC-HhHHHHHHHHHHHcCCHH
Q 003035 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYE 565 (855)
Q Consensus 498 ~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~-~~~l~lra~~y~~~gd~~ 565 (855)
+++...+...--+-|+....-.+-|.+++..|++.+|+..++.+..-.+. +-+-.+++.+...+||.+
T Consensus 27 ~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 27 YDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred HHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 44555566666778888888888999999999999999999999987765 556677788888888854
No 388
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.43 E-value=2.3 Score=27.73 Aligned_cols=24 Identities=17% Similarity=0.072 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHH
Q 003035 675 ERLVYEGWILYDTGHREEALSRAE 698 (855)
Q Consensus 675 ~~~~~lg~~~~~~g~~~eAl~~~~ 698 (855)
.+.+.+|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345666777777777777766654
No 389
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=78.81 E-value=2.4 Score=27.62 Aligned_cols=22 Identities=23% Similarity=0.215 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 003035 782 AHQGLARVYYLKNELKAAYDEM 803 (855)
Q Consensus 782 a~~~lg~~~~~~g~~~~A~~~~ 803 (855)
++..+|.++..+|+.++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 4455555666666666555554
No 390
>PRK09687 putative lyase; Provisional
Probab=78.00 E-value=1.1e+02 Score=33.10 Aligned_cols=190 Identities=13% Similarity=0.013 Sum_probs=119.2
Q ss_pred CChHHHHHHHHHHHHcCCH----HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHhccCChH
Q 003035 638 GKSFLRFRQSLLLLRLNCQ----KAAMRCLRLARNHSSSEHERLVYEGWILYDTGH-----REEALSRAEKSISIERTFE 708 (855)
Q Consensus 638 ~~~~~~~~~a~~l~~~g~~----~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~-----~~eAl~~~~kal~~~p~~~ 708 (855)
.++..+...+..+-+.|+. .++...+..++..+|+ +.+...-..++-..+. ..+++..+..++. +++..
T Consensus 66 ~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d-~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~-D~~~~ 143 (280)
T PRK09687 66 KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKS-ACVRASAINATGHRCKKNPLYSPKIVEQSQITAF-DKSTN 143 (280)
T ss_pred CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCC-HHHHHHHHHHHhcccccccccchHHHHHHHHHhh-CCCHH
Confidence 3567777777778888863 5677777777666665 4444332333322221 1233444333332 33336
Q ss_pred HHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcccHHHHHH
Q 003035 709 AFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG---QALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQG 785 (855)
Q Consensus 709 a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~---~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~~~~a~~~ 785 (855)
..+.-+.++...++ ++++.. +-.+++ .-++. .+...||.+ .-....+...+.+++.-.+..+...
T Consensus 144 VR~~a~~aLg~~~~-~~ai~~----L~~~L~----d~~~~VR~~A~~aLg~~---~~~~~~~~~~L~~~L~D~~~~VR~~ 211 (280)
T PRK09687 144 VRFAVAFALSVIND-EAAIPL----LINLLK----DPNGDVRNWAAFALNSN---KYDNPDIREAFVAMLQDKNEEIRIE 211 (280)
T ss_pred HHHHHHHHHhccCC-HHHHHH----HHHHhc----CCCHHHHHHHHHHHhcC---CCCCHHHHHHHHHHhcCCChHHHHH
Confidence 66666677766664 677777 777772 22222 555556655 1135678888999986557777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 003035 786 LARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLR 843 (855)
Q Consensus 786 lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~~g~~eeA~~~~~kAl~l~P~~ 843 (855)
-.+.+.+.|+ ..|+..+-+.++...--..+...+|..|.. +|+..+.+.+..+|+.
T Consensus 212 A~~aLg~~~~-~~av~~Li~~L~~~~~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d~ 267 (280)
T PRK09687 212 AIIGLALRKD-KRVLSVLIKELKKGTVGDLIIEAAGELGDK-TLLPVLDTLLYKFDDN 267 (280)
T ss_pred HHHHHHccCC-hhHHHHHHHHHcCCchHHHHHHHHHhcCCH-hHHHHHHHHHhhCCCh
Confidence 7777777787 689999988887533223455566667775 7999999999888853
No 391
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.87 E-value=1.2e+02 Score=35.46 Aligned_cols=150 Identities=19% Similarity=0.109 Sum_probs=95.9
Q ss_pred cCCHHHHHHHHHHHHhc------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----------------
Q 003035 653 LNCQKAAMRCLRLARNH------------SSSEHERLVYEGWILYDTGHREEALSRAEKSISI----------------- 703 (855)
Q Consensus 653 ~g~~~~A~~~l~~al~~------------~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~----------------- 703 (855)
.+.|++|...|.-+.+. .|...+.+..++.+...+|+.+-|....+++|=.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34567777777766543 4667788899999999999988877777666521
Q ss_pred ----cCCh----HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH----HHHHHHHHHHHHcCCHHHHHHHH
Q 003035 704 ----ERTF----EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG----QALNNLGSIYVECGKLDQAENCY 771 (855)
Q Consensus 704 ----~p~~----~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~----~a~~~LG~~y~~~g~~~~A~~~~ 771 (855)
.|.+ -+++..-..+...|-+..|.++ .+-.+ .++|. .+...+-.......+|+=-++.+
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~----cKlll-----sLdp~eDPl~~l~~ID~~ALrareYqwiI~~~ 401 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEW----CKLLL-----SLDPSEDPLGILYLIDIYALRAREYQWIIELS 401 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHH----HHHHh-----hcCCcCCchhHHHHHHHHHHHHHhHHHHHHHH
Confidence 2333 3334444557788999999999 77777 55554 33333333344445555555555
Q ss_pred HHHHhcc------cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHcc
Q 003035 772 INALDIK------HTRAHQGLARVYYLKNE---LKAAYDEMTKLLEKAQ 811 (855)
Q Consensus 772 ~kAL~~~------~~~a~~~lg~~~~~~g~---~~~A~~~~~kal~~~p 811 (855)
+..-..+ +..--..+|+.|..+.. ...|...+.+|+...|
T Consensus 402 ~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 402 NEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 4443222 32333345666666654 6789999999998877
No 392
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=77.77 E-value=9.8 Score=42.88 Aligned_cols=120 Identities=20% Similarity=0.100 Sum_probs=82.2
Q ss_pred hhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHH
Q 003035 615 DRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEAL 694 (855)
Q Consensus 615 ~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl 694 (855)
..|...|-+.+-..+..++...|.++..-...+.+...+|+|+.|.+.+..+-..-.....+...+-......|++++|+
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 33444444445556777889999999988888999999999999998886665544333444444556667788888888
Q ss_pred HHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHh
Q 003035 695 SRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEAL 738 (855)
Q Consensus 695 ~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al 738 (855)
...+-.+.-.-+. +....-|..-...|-++++..+ +++.+
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~----wk~~~ 418 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHY----WKRVL 418 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHH----HHHHh
Confidence 8877766654444 4444444445556677788877 66666
No 393
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=77.26 E-value=7.4 Score=27.80 Aligned_cols=32 Identities=25% Similarity=0.261 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHHHccC
Q 003035 781 RAHQGLARVYYLKNELKAAYDE--MTKLLEKAQY 812 (855)
Q Consensus 781 ~a~~~lg~~~~~~g~~~~A~~~--~~kal~~~p~ 812 (855)
..++.+|..+..+|++++|++. |.-+..+++.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 3456677777777777777777 3366655554
No 394
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=76.94 E-value=6.7 Score=28.01 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHCCCHHHHHHH--HHHHHhccCC
Q 003035 675 ERLVYEGWILYDTGHREEALSR--AEKSISIERT 706 (855)
Q Consensus 675 ~~~~~lg~~~~~~g~~~eAl~~--~~kal~~~p~ 706 (855)
+.++.+|-.++.+|++++|+.. |+-+..+++.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 4566777777777777777777 4366555553
No 395
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=76.79 E-value=5.9 Score=42.31 Aligned_cols=78 Identities=5% Similarity=0.005 Sum_probs=67.2
Q ss_pred HHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-HHHHHHHCCCHHHHHHHHHHHHhccCCh
Q 003035 630 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVY-EGWILYDTGHREEALSRAEKSISIERTF 707 (855)
Q Consensus 630 ~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~-lg~~~~~~g~~~eAl~~~~kal~~~p~~ 707 (855)
++.....|+++..|...+....+.|.+.+--..|.++++.+|.+.+.|.. .+.-+...++++.+...|.++++.+|+.
T Consensus 97 ~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 97 YRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred ehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 34444568888888888777777888999999999999999999999976 6677888999999999999999999987
No 396
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=76.57 E-value=8 Score=41.21 Aligned_cols=61 Identities=16% Similarity=0.037 Sum_probs=51.8
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHH
Q 003035 659 AMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILAD 719 (855)
Q Consensus 659 A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~ 719 (855)
|+.+|.+|+.+.|++...++.+|.++...|+.=+|+=+|-+++-....+ .+..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999876556 788888888777
No 397
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.53 E-value=1.7e+02 Score=34.77 Aligned_cols=63 Identities=17% Similarity=0.064 Sum_probs=55.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC
Q 003035 643 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIER 705 (855)
Q Consensus 643 ~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p 705 (855)
...++.+|+.+.+.+.|.+++++|-+.+|.++-..+..-.+....|.-++|+....+.....-
T Consensus 397 qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 397 QRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSED 459 (872)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhc
Confidence 345677899999999999999999999999999999999999999999999999988776543
No 398
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=75.38 E-value=11 Score=47.64 Aligned_cols=143 Identities=15% Similarity=0.071 Sum_probs=105.9
Q ss_pred HHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 003035 631 QMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH--------SSSEHERLVYEGWILYDTGHREEALSRAEKSIS 702 (855)
Q Consensus 631 ~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~--------~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~ 702 (855)
.+-...|..+..+..++.++.+.+++++|+..-.++.-+ .|+....+.+++...+..++...|+..+.++..
T Consensus 964 v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~ 1043 (1236)
T KOG1839|consen 964 VMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALK 1043 (1236)
T ss_pred hhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHH
Confidence 344567888888999999999999999999987776543 245566778889888999999999999988876
Q ss_pred c--------cCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH-----HHHHHHHHHHHHcCCHHHHH
Q 003035 703 I--------ERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG-----QALNNLGSIYVECGKLDQAE 768 (855)
Q Consensus 703 ~--------~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~-----~a~~~LG~~y~~~g~~~~A~ 768 (855)
+ .|.- ....+++.++...++++.|+.+ ++.|++....-..|. ..+..++.++..++++..|.
T Consensus 1044 l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~----le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al 1119 (1236)
T KOG1839|consen 1044 LKLLSSGEDHPPTALSFINLELLLLGVEEADTALRY----LESALAKNKKVLGPKELETALSYHALARLFESMKDFRNAL 1119 (1236)
T ss_pred hhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHH----HHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHH
Confidence 5 3544 6667889999999999999999 888884322222221 55666666666666666666
Q ss_pred HHHHHHHhc
Q 003035 769 NCYINALDI 777 (855)
Q Consensus 769 ~~~~kAL~~ 777 (855)
...+.+..+
T Consensus 1120 ~~ek~t~~i 1128 (1236)
T KOG1839|consen 1120 EHEKVTYGI 1128 (1236)
T ss_pred HHHhhHHHH
Confidence 666555543
No 399
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=75.16 E-value=86 Score=33.39 Aligned_cols=138 Identities=13% Similarity=0.042 Sum_probs=66.7
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc-----cCCh-HHHHHHHHHHHHCCCCc-hhHHHHHHHHHHHhcCCCC--CCCHH
Q 003035 678 VYEGWILYDTGHREEALSRAEKSISI-----ERTF-EAFFLKAYILADTNLDP-ESSTYVIQLLEEALRCPSD--GLRKG 748 (855)
Q Consensus 678 ~~lg~~~~~~g~~~eAl~~~~kal~~-----~p~~-~a~~~lg~~~~~~g~~~-~A~~~~~~lle~al~~~~~--~~~p~ 748 (855)
+.=+..+.+.|++.-|.....-.++. .+.+ ...-+++.++...+.-+ +-... .+++++=... ....+
T Consensus 14 ~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~f----i~~ai~WS~~~~~~~Gd 89 (260)
T PF04190_consen 14 YSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKF----IKAAIKWSKFGSYKFGD 89 (260)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHH----HHHHHHHHHTSS-TT--
T ss_pred HHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHH----HHHHHHHHccCCCCCCC
Confidence 33466677777766665544333332 1222 44456666666665443 33333 5555532111 11111
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHcCCHHHHHHH----HHHHHHHccCCHHHHHHHhh-
Q 003035 749 -QALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDE----MTKLLEKAQYSASAFEKRSE- 822 (855)
Q Consensus 749 -~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~~~~a~~~lg~~~~~~g~~~~A~~~----~~kal~~~p~~~~a~~~lg~- 822 (855)
+.+..+|..|.+.|++.+|..+|--. +...+... +.-..+-.|...+.+..++.
T Consensus 90 p~LH~~~a~~~~~e~~~~~A~~Hfl~~--------------------~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL 149 (260)
T PF04190_consen 90 PELHHLLAEKLWKEGNYYEAERHFLLG--------------------TDPSAFAYVMLLEEWSTKGYPSEADLFIARAVL 149 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHTS---------------------HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHhc--------------------CChhHHHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence 67777777777777777766665221 11111111 11112234555666666666
Q ss_pred ----cCCHHHHHHHHHHHHhc
Q 003035 823 ----YSDREMAKNDLNMATQL 839 (855)
Q Consensus 823 ----~g~~eeA~~~~~kAl~l 839 (855)
.++...|...+..-++.
T Consensus 150 ~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 150 QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 78999888877665554
No 400
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=74.51 E-value=16 Score=38.71 Aligned_cols=64 Identities=17% Similarity=0.035 Sum_probs=56.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHH
Q 003035 649 LLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFL 712 (855)
Q Consensus 649 ~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~ 712 (855)
.+++.++++.|..+.++.+.++|+++.-+.-.|.+|.++|.+.-|+..++..++.-|+. .+-..
T Consensus 190 ~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~i 254 (269)
T COG2912 190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMI 254 (269)
T ss_pred HHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHH
Confidence 57788999999999999999999999999999999999999999999999999988887 44333
No 401
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=73.93 E-value=3.9 Score=43.62 Aligned_cols=72 Identities=8% Similarity=0.036 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHH
Q 003035 749 QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQG-LARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKR 820 (855)
Q Consensus 749 ~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~-lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~l 820 (855)
..|...+..-.+.|-+.+--..|.++++.+ +...|.. -+.-+...++.+.+...|.+++..+|++|..|...
T Consensus 108 k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 108 KIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 556555555555666666666666666666 5544433 33445556667777777777777777766665543
No 402
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=73.39 E-value=1e+02 Score=30.78 Aligned_cols=50 Identities=20% Similarity=0.224 Sum_probs=39.3
Q ss_pred cCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHc
Q 003035 761 CGKLDQAENCYINALDIKHTRAHQGLARVYYLK----NELKAAYDEMTKLLEKA 810 (855)
Q Consensus 761 ~g~~~~A~~~~~kAL~~~~~~a~~~lg~~~~~~----g~~~~A~~~~~kal~~~ 810 (855)
..+.++|.+.-.+|-+++++.+.-|+.+.|..- .+.++|..+-++|.++.
T Consensus 181 ~kDMdka~qfa~kACel~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~ 234 (248)
T KOG4014|consen 181 SKDMDKALQFAIKACELDIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIM 234 (248)
T ss_pred hHhHHHHHHHHHHHHhcCChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHH
Confidence 356788999999999999888888888877653 36778888888887763
No 403
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=72.81 E-value=81 Score=33.05 Aligned_cols=59 Identities=8% Similarity=0.045 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHccCCC--HhHHHHHHHHH-HHcCCHHHHHHHHHHHHh
Q 003035 518 YKYRAVAKMEEGQIRAAISEIDRIIVFKLS--VDCLELRAWLF-IAADDYESALRDTLALLA 576 (855)
Q Consensus 518 ~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~--~~~l~lra~~y-~~~gd~~~A~~~~~~aL~ 576 (855)
+.++|.+.-+.++|++.+..+++++..++. .+-..+....| ...|....+.+.+.....
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 467889999999999999999999988774 44445544444 344555666655555544
No 404
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=72.78 E-value=15 Score=39.37 Aligned_cols=61 Identities=8% Similarity=-0.032 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 003035 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS 702 (855)
Q Consensus 642 ~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~ 702 (855)
++..++..+...|+++.+...+++.++.+|.+...|..+-..|+..|+...|+..|++.-+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4455666677778888888888888888888888888888888888888888888777654
No 405
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=71.54 E-value=14 Score=42.23 Aligned_cols=83 Identities=16% Similarity=0.006 Sum_probs=69.5
Q ss_pred hHHHHHHHHHcCCCChHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 003035 625 SLAVINQMLINDPGKSFLRFRQSLLLLR---LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSI 701 (855)
Q Consensus 625 al~~~~~~l~~~p~~~~~~~~~a~~l~~---~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal 701 (855)
++..+...+...|.....+-..+.++++ .|+.-.|+.....|+.++|...-+++.|+.++...+++.+|+.....+.
T Consensus 393 ~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq 472 (758)
T KOG1310|consen 393 AISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQ 472 (758)
T ss_pred HHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHh
Confidence 3445566777778888888777777776 4677788889999999999999999999999999999999999998888
Q ss_pred hccCCh
Q 003035 702 SIERTF 707 (855)
Q Consensus 702 ~~~p~~ 707 (855)
..+|.+
T Consensus 473 ~~~Ptd 478 (758)
T KOG1310|consen 473 MSFPTD 478 (758)
T ss_pred hcCchh
Confidence 888865
No 406
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.43 E-value=19 Score=42.26 Aligned_cols=86 Identities=10% Similarity=0.079 Sum_probs=52.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH------HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHH
Q 003035 644 FRQSLLLLRLNCQKAAMRCLRLARNHSSSEH------ERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYI 716 (855)
Q Consensus 644 ~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~------~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~ 716 (855)
.+.|.-+++..+|..+++.|+..+..-|.+- -....+..+|....+.|.|.+++++|-+.+|.+ -..+..-.+
T Consensus 358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~ 437 (872)
T KOG4814|consen 358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQS 437 (872)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 3444455666677777777777666555432 233456666667777777777777777777776 444444444
Q ss_pred HHHCCCCchhHHH
Q 003035 717 LADTNLDPESSTY 729 (855)
Q Consensus 717 ~~~~g~~~~A~~~ 729 (855)
....++-.+|+..
T Consensus 438 ~~~E~~Se~AL~~ 450 (872)
T KOG4814|consen 438 FLAEDKSEEALTC 450 (872)
T ss_pred HHHhcchHHHHHH
Confidence 4555556666666
No 407
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=69.74 E-value=2.2e+02 Score=33.04 Aligned_cols=170 Identities=13% Similarity=-0.026 Sum_probs=96.8
Q ss_pred CCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCchhhhhcccch
Q 003035 513 TLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLAL-ESNYMMFHGRVSG 590 (855)
Q Consensus 513 ~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~-~~~l~lra~~y~~~gd~~~A~~~~~~aL~~-~P~~~~~~~~~~~ 590 (855)
.+..+|+.++.+|++. ..++=....+++++.+-+ ......++..|.+ ++.+.+...|.+++-. -|.. .+.+.
T Consensus 97 e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~----q~~~i 170 (711)
T COG1747 97 ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRR----QNAAI 170 (711)
T ss_pred chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchh----hhhhH
Confidence 3456777788888887 556667777887776553 2333445666666 8999999999998842 1211 11111
Q ss_pred hHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcC--CCChHHHHHHH-HHHHHcCCHHHHHHHHHHHH
Q 003035 591 DHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIND--PGKSFLRFRQS-LLLLRLNCQKAAMRCLRLAR 667 (855)
Q Consensus 591 ~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~--p~~~~~~~~~a-~~l~~~g~~~~A~~~l~~al 667 (855)
..+..-+.+.++ +|.+..-.+.+-++.+ .....+.+..- .-|....++++|++.+...+
T Consensus 171 ~evWeKL~~~i~------------------dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il 232 (711)
T COG1747 171 KEVWEKLPELIG------------------DDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHIL 232 (711)
T ss_pred HHHHHHHHHhcc------------------ccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHh
Confidence 111111111111 1111111111111111 12222333332 23445678999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHH--------------------CCCHHHHHHHHHHHHhccCC
Q 003035 668 NHSSSEHERLVYEGWILYD--------------------TGHREEALSRAEKSISIERT 706 (855)
Q Consensus 668 ~~~p~~~~~~~~lg~~~~~--------------------~g~~~eAl~~~~kal~~~p~ 706 (855)
+++..+..+.-.+-.-+.. -.++.+++..|++.+-.+..
T Consensus 233 ~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eG 291 (711)
T COG1747 233 EHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEG 291 (711)
T ss_pred hhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccC
Confidence 9999988887666655555 45677777777777765443
No 408
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=69.56 E-value=44 Score=35.86 Aligned_cols=61 Identities=20% Similarity=0.335 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 003035 749 QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEK 809 (855)
Q Consensus 749 ~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~ 809 (855)
.++..++..+...|+++.++..+++-+..+ +..+|..+=.+|...|+...|+..|++.-+.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 567778888999999999999999999999 8899999999999999999999999988775
No 409
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=68.81 E-value=1.8e+02 Score=31.70 Aligned_cols=174 Identities=11% Similarity=-0.043 Sum_probs=84.5
Q ss_pred chHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q 003035 624 GSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI 703 (855)
Q Consensus 624 ~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~ 703 (855)
..+...+.+++.+|.=+.++..++.- +.--..+|.+.|++|++.. +..+...+....+|..-+|. .+.
T Consensus 202 ~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~----e~~yr~sqq~qh~~~~~da~------~rR 269 (556)
T KOG3807|consen 202 ARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAG----ETIYRQSQQCQHQSPQHEAQ------LRR 269 (556)
T ss_pred HHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHH----HHHHhhHHHHhhhccchhhh------hhc
Confidence 34566788999999888877766642 2233566777777777542 11111222222222221211 111
Q ss_pred cCCh--HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH----HHHHHHHHHH----------------HHc
Q 003035 704 ERTF--EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG----QALNNLGSIY----------------VEC 761 (855)
Q Consensus 704 ~p~~--~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~----~a~~~LG~~y----------------~~~ 761 (855)
+.+. .....++.+-.++|+..+|++. ++... +-.|- .++-||-..+ .+.
T Consensus 270 Dtnvl~YIKRRLAMCARklGrlrEA~K~----~RDL~-----ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi 340 (556)
T KOG3807|consen 270 DTNVLVYIKRRLAMCARKLGRLREAVKI----MRDLM-----KEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI 340 (556)
T ss_pred ccchhhHHHHHHHHHHHHhhhHHHHHHH----HHHHh-----hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 1111 2223445555555555555555 44444 21111 1111111111 122
Q ss_pred CCHHHHHHHHHHHHhcc-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh
Q 003035 762 GKLDQAENCYINALDIK-------HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE 822 (855)
Q Consensus 762 g~~~~A~~~~~kAL~~~-------~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~ 822 (855)
.....|--+|..|+-.. .+.+-...|..-. -..|++...++++-+|.-|.++..+-.
T Consensus 341 slPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~A----E~~AvEAihRAvEFNPHVPkYLLE~ks 404 (556)
T KOG3807|consen 341 SLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTA----EINAVEAIHRAVEFNPHVPKYLLEMKS 404 (556)
T ss_pred cCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHH----HHHHHHHHHHHhhcCCCCcHHHHHHHh
Confidence 23344555565554221 2333333332222 236899999999999998887665544
No 410
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=68.30 E-value=18 Score=37.27 Aligned_cols=92 Identities=17% Similarity=0.016 Sum_probs=59.3
Q ss_pred CCCc-EEEEEcCeEEEeeehhhhcCCHH----HHHhhcCCCcc--CCCCeeEecCCCCCHHHHHHHHHHhccCCCCCCCH
Q 003035 216 EDDS-VTFCVRDKEISFVRNKIASLSSP----FKAMLYGGFVE--SKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCP 288 (855)
Q Consensus 216 ~~~~-V~f~v~~~~~~aHr~vLaa~S~~----F~~mf~~~~~E--~~~~~I~l~~~~is~~~~~~ll~y~YTg~l~~~~~ 288 (855)
+..+ |.+-|||+.+..- |+.-+.| ...||++.+.- +.....-| |-+-..|+-||+|+-|..+. ++.
T Consensus 6 ~~~~~v~lnvGG~~ytt~---l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI---DRDG~lFRyvL~~LRt~~l~-lpe 78 (221)
T KOG2723|consen 6 EYPDVVELNVGGAIYTTR---LGTLTKFPDSMLARMFSGELPLLRDSKGRYFI---DRDGFLFRYVLDYLRTKALL-LPE 78 (221)
T ss_pred ccCCceeeccCCeEEEee---ccceeechHHHHHhhcCCCCCccccccccEEE---cCCcchHHHHHHHhcccccc-cch
Confidence 4455 8888888655432 3333333 34555542111 11224444 45678999999999996665 555
Q ss_pred --HHHHHHHHHhchhChHHHHHHHHHHH
Q 003035 289 --GIVLELLSFANRFCCEEMKSACDAHL 314 (855)
Q Consensus 289 --~~~~~ll~~A~~~~~~~Lk~~C~~~l 314 (855)
.++..|..-|+.|+++.+...+.+-.
T Consensus 79 ~f~e~~~L~rEA~f~~l~~~~~~l~~~~ 106 (221)
T KOG2723|consen 79 DFAEVERLVREAEFFQLEAPVTYLLNSG 106 (221)
T ss_pred hhhhHHHHHHHHHHHccccHHHHHhccc
Confidence 56888999999999998877665443
No 411
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=66.90 E-value=19 Score=40.66 Aligned_cols=121 Identities=16% Similarity=0.035 Sum_probs=85.0
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHH
Q 003035 651 LRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTY 729 (855)
Q Consensus 651 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~ 729 (855)
...|+.-.|-+-+..++...|.+|......+.+....|+|+.|.+....+-.+--.- .+..-+-..+...|++++|...
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 568999999999999999999999999999999999999999998876655443333 4555555667777888888877
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 003035 730 VIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK 778 (855)
Q Consensus 730 ~~~lle~al~~~~~~~~p~~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~ 778 (855)
-+-.+ ++++...++..--+-.-...|-+|+|.-.+++.+.++
T Consensus 380 ----a~~~l---~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 380 ----AEMML---SNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred ----HHHHh---ccccCChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 55444 2222222222222233345667788888888888777
No 412
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=65.97 E-value=1.5e+02 Score=31.84 Aligned_cols=130 Identities=10% Similarity=-0.010 Sum_probs=80.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc-CCC-----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-------HHH
Q 003035 644 FRQSLLLLRLNCQKAAMRCLRLARNH-SSS-----EHERLVYEGWILYDTGHREEALSRAEKSISIERTF-------EAF 710 (855)
Q Consensus 644 ~~~a~~l~~~g~~~~A~~~l~~al~~-~p~-----~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-------~a~ 710 (855)
|..+.+-.-.++.++-++.+.+.++. ..+ ..+++.++|..|.+.++.+.+.+...+.++..-.. -..
T Consensus 79 fD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~k 158 (412)
T COG5187 79 FDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCK 158 (412)
T ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHH
Confidence 44444333334445556666444432 222 35788999999999999999998888877654321 334
Q ss_pred HHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003035 711 FLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI 777 (855)
Q Consensus 711 ~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~~a~~~LG~~y~~~g~~~~A~~~~~kAL~~ 777 (855)
..+|.+|.++.=..+.++. .+..++...+--+.+..-...|.......++.+|...+-..+.-
T Consensus 159 iRlg~~y~d~~vV~e~lE~----~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 159 IRLGLIYGDRKVVEESLEV----ADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred HHHHHhhccHHHHHHHHHH----HHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 5678888777666666666 55555333333233334444566666677888888777776643
No 413
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=65.50 E-value=20 Score=38.24 Aligned_cols=58 Identities=12% Similarity=-0.067 Sum_probs=47.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 003035 643 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKS 700 (855)
Q Consensus 643 ~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~ka 700 (855)
....+..+...|.+.+|+++.+++++++|-+.+.+..+-.++...|+--.|+++|++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 4455667888888999999999999999888888888888888888877777777653
No 414
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.40 E-value=1.4e+02 Score=32.74 Aligned_cols=96 Identities=13% Similarity=0.025 Sum_probs=47.1
Q ss_pred HHHHHHHcCCCChHHH---HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH-------HHHHHHHHHHHCCCHHHHHHHH
Q 003035 628 VINQMLINDPGKSFLR---FRQSLLLLRLNCQKAAMRCLRLARNHSSSEHE-------RLVYEGWILYDTGHREEALSRA 697 (855)
Q Consensus 628 ~~~~~l~~~p~~~~~~---~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~-------~~~~lg~~~~~~g~~~eAl~~~ 697 (855)
.+++..+.-|++.... +..|+++...++|.+....|..+-+......+ .--..|......
T Consensus 43 ~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vND---------- 112 (449)
T COG3014 43 AYEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMIND---------- 112 (449)
T ss_pred HHHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhcc----------
Confidence 4555555555543222 34566777777777777666554332111100 011222222211
Q ss_pred HHHHhccCCh----HHHHHHHHHHHHCCCCchhHHHHHHHHHHHh
Q 003035 698 EKSISIERTF----EAFFLKAYILADTNLDPESSTYVIQLLEEAL 738 (855)
Q Consensus 698 ~kal~~~p~~----~a~~~lg~~~~~~g~~~~A~~~~~~lle~al 738 (855)
...+..|.. ...+.+|..|....+++.|.-. |+++.
T Consensus 113 -Ni~~Y~g~~YE~~~~n~YkaLNYm~~nD~~~ArVE----fnRan 152 (449)
T COG3014 113 -NVRAYGGNIYEGVLINYYKALNYMLLNDSAKARVE----FNRAN 152 (449)
T ss_pred -chhhcCchhHHHHHHHHHHHhhHHHhcchhhhHHH----HHHHH
Confidence 122223333 3344567777777777777777 77666
No 415
>PRK11619 lytic murein transglycosylase; Provisional
Probab=65.26 E-value=3.2e+02 Score=33.26 Aligned_cols=118 Identities=12% Similarity=-0.014 Sum_probs=66.5
Q ss_pred HHhhhhHhhhhcHHHHHHHHHHHHHhcchhhhhhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHhhcc---Ccch
Q 003035 423 HQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYN---LGRE 499 (855)
Q Consensus 423 ~~LG~~~l~~g~~~eA~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~~~---~~~~ 499 (855)
+.-+.-.++.|++.++...-.+ +.-.+...+..-..+....+. ...+.+...+..+|+.+..-..+..+- ....
T Consensus 37 f~~A~~a~~~g~~~~~~~~~~~-l~d~pL~~yl~y~~L~~~l~~--~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~ 113 (644)
T PRK11619 37 YQQIKQAWDNRQMDVVEQLMPT-LKDYPLYPYLEYRQLTQDLMN--QPAVQVTNFIRANPTLPPARSLQSRFVNELARRE 113 (644)
T ss_pred HHHHHHHHHCCCHHHHHHHHHh-ccCCCcHhHHHHHHHHhcccc--CCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcc
Confidence 4455566778888777555443 222233333333233222222 234578888889887654332222110 0123
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHc
Q 003035 500 KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIV 543 (855)
Q Consensus 500 A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~ 543 (855)
.+..+.+.....|.+.....+.+..+...|+.++|.+...++--
T Consensus 114 ~w~~~~~~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~ 157 (644)
T PRK11619 114 DWRGLLAFSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWL 157 (644)
T ss_pred CHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 34444443334577777777788888899999989888888754
No 416
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=64.30 E-value=29 Score=36.65 Aligned_cols=56 Identities=13% Similarity=-0.011 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--------cHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003035 749 QALNNLGSIYVECGKLDQAENCYINALDIK--------HTRAHQGLARVYYLKNELKAAYDEMT 804 (855)
Q Consensus 749 ~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--------~~~a~~~lg~~~~~~g~~~~A~~~~~ 804 (855)
.....+|..|...|++++|.+.|+.+.... ...++..+-.++...|+.+..+...-
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 566789999999999999999999996543 34567778888888888877766543
No 417
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=64.12 E-value=8.4 Score=42.05 Aligned_cols=122 Identities=19% Similarity=0.171 Sum_probs=89.0
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHH
Q 003035 678 VYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLG 755 (855)
Q Consensus 678 ~~lg~~~~~~g~~~eAl~~~~kal~~~p~~~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG 755 (855)
-..|.-.+..++++.|...|.+++..-... .... ..+.. ++ + +.+... ....+++
T Consensus 226 k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~----------s~~~-~~e~~-------~~-~----~~~~~~r~~~~~n~~ 282 (372)
T KOG0546|consen 226 KNIGNKEFKKQRYREALAKYRKALRYLSEQ----------SRDR-EKEQE-------NR-I----PPLRELRFSIRRNLA 282 (372)
T ss_pred hccchhhhhhccHhHHHHHHHHHhhhhccc----------cccc-ccccc-------cc-c----ccccccccccccchH
Confidence 456777889999999999999887642100 0000 00000 00 0 011222 5666788
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh
Q 003035 756 SIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE 822 (855)
Q Consensus 756 ~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~ 822 (855)
.+-...+.+..|+..-..++..+ ...+++..|..+....++++|+++++.+....|++......+..
T Consensus 283 ~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~ 351 (372)
T KOG0546|consen 283 AVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELEN 351 (372)
T ss_pred HhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHH
Confidence 88889999999988888888766 78899999999999999999999999999999999887766666
No 418
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=64.03 E-value=1.5e+02 Score=33.54 Aligned_cols=125 Identities=19% Similarity=0.152 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH--HH--HHHHHHHHHCCCHHHHHHHHHHHHhccCC---h-HHHHHH
Q 003035 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHE--RL--VYEGWILYDTGHREEALSRAEKSISIERT---F-EAFFLK 713 (855)
Q Consensus 642 ~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~--~~--~~lg~~~~~~g~~~eAl~~~~kal~~~p~---~-~a~~~l 713 (855)
.....+..+++.++|..|.+.|+.+...-|.... .+ ...|.-+.+.-++.+|...+++.+...-. . ..+..+
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~ 212 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKEL 212 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Confidence 3455677788999999999999999885333333 33 33566677899999999999998775322 1 222222
Q ss_pred HHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH------HHcCCHHHHHHHHHHHHhcc
Q 003035 714 AYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIY------VECGKLDQAENCYINALDIK 778 (855)
Q Consensus 714 g~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~~a~~~LG~~y------~~~g~~~~A~~~~~kAL~~~ 778 (855)
..+............. .... ... -.+..+++++ ...|+|+.|+-.+=+++++-
T Consensus 213 ~~~~~~~~~~~~~~~~----~~~~------~~~--~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~ 271 (379)
T PF09670_consen 213 VEVLKALESILSALED----KKQR------QKK--LYYALLADLLANAERRAAQGRYDDAVARLYRALELL 271 (379)
T ss_pred HHHHHHHHhhccchhh----hhcc------ccc--cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 2222222222222211 0000 000 0233333333 45789999999988888865
No 419
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=64.03 E-value=2.8e+02 Score=32.16 Aligned_cols=75 Identities=12% Similarity=-0.032 Sum_probs=47.6
Q ss_pred HHhHHHcCCCchHHHHHHhhccC----cchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC-HHHHHHHHHHHHccCCCH
Q 003035 474 INSIISEHKPTGWMYQERSLYNL----GREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQ-IRAAISEIDRIIVFKLSV 548 (855)
Q Consensus 474 l~~~i~~~p~~~~~y~~~~~~~~----~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~-~~~A~~~~~k~l~~~p~~ 548 (855)
|+.+...++.+...+..-..|+. ..+--..|.+++..+|+++..|.+-|.-.++-+. .+.|...+.+.|.++|+.
T Consensus 94 yr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npds 173 (568)
T KOG2396|consen 94 YRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDS 173 (568)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCC
Confidence 44455555554444433333321 1223345777888888888888887776666555 888888888888888863
No 420
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=63.39 E-value=11 Score=28.26 Aligned_cols=23 Identities=26% Similarity=0.237 Sum_probs=13.5
Q ss_pred HHHhhcccccchhhHHHHHHHHhh
Q 003035 387 LSQVAMEKDRVSNTTVMLLERLGE 410 (855)
Q Consensus 387 La~~~~~~~~~~~~a~~~le~~~~ 410 (855)
||..|++.|+ .+.|..+|++++.
T Consensus 5 LA~ayie~Gd-~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGD-LEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCC-hHHHHHHHHHHHH
Confidence 5555555565 5666666666553
No 421
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.94 E-value=1.8e+02 Score=35.79 Aligned_cols=54 Identities=22% Similarity=0.226 Sum_probs=37.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q 003035 649 LLLRLNCQKAAMRCLRLARNHSSS-EHERLVYEGWILYDTGHREEALSRAEKSISI 703 (855)
Q Consensus 649 ~l~~~g~~~~A~~~l~~al~~~p~-~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~ 703 (855)
++.+.+-|+-|+..-+. ...+++ -.+.+...|.-++..|++++|...|-+.|..
T Consensus 343 iL~kK~ly~~Ai~LAk~-~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 343 ILFKKNLYKVAINLAKS-QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHhhhHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 45556667777755443 222332 2456677899999999999999999988874
No 422
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=62.83 E-value=59 Score=36.51 Aligned_cols=52 Identities=12% Similarity=0.117 Sum_probs=47.4
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHH
Q 003035 678 VYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTY 729 (855)
Q Consensus 678 ~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~ 729 (855)
..+..+|..+++.+-|+.+..+.|.++|.. .-+...|.++....+|.+|...
T Consensus 232 tklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarS 284 (569)
T PF15015_consen 232 TKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARS 284 (569)
T ss_pred HHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999998 8888889999999999988776
No 423
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=61.94 E-value=7.1e+02 Score=36.11 Aligned_cols=187 Identities=13% Similarity=0.126 Sum_probs=110.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCc-HHHHHHH---HHHHHHCC-CHHHHHHHHHHH-HhccCCh---HHHHHHHHH
Q 003035 646 QSLLLLRLNCQKAAMRCLRLARNHSSSE-HERLVYE---GWILYDTG-HREEALSRAEKS-ISIERTF---EAFFLKAYI 716 (855)
Q Consensus 646 ~a~~l~~~g~~~~A~~~l~~al~~~p~~-~~~~~~l---g~~~~~~g-~~~eAl~~~~ka-l~~~p~~---~a~~~lg~~ 716 (855)
.|.+....|-++.++..+.+..++..-. .++...+ +.+|+... ....+++..+.. +...++. +.+...|..
T Consensus 2742 fakvArkh~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~lkG~f 2821 (3550)
T KOG0889|consen 2742 FAKVARKHGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFTLKGMF 2821 (3550)
T ss_pred HHHHHHhcCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHHhhhHH
Confidence 3444445555666666666655543211 2222211 22333222 333333333221 1122333 667789999
Q ss_pred HHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHc----CC----HHHHHHHHHHHHhcc-cHHHHHH
Q 003035 717 LADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVEC----GK----LDQAENCYINALDIK-HTRAHQG 785 (855)
Q Consensus 717 ~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~----g~----~~~A~~~~~kAL~~~-~~~a~~~ 785 (855)
+.+.|+.++|-.. |..|+ .+..+ .+|.+.|...... +. -..|+.||-+|.... +..+.-.
T Consensus 2822 ~~kL~~~eeAn~~----fs~Av-----Qi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~~skaRk~ 2892 (3550)
T KOG0889|consen 2822 LEKLGKFEEANKA----FSAAV-----QIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYNSSKARKL 2892 (3550)
T ss_pred HHHhcCcchhHHH----HHHHH-----HHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccccchhhHHH
Confidence 9999999999999 99999 76666 8888888765432 22 456888888888877 6666667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh---------cCCHHHHHHHHHHHHhcCCC
Q 003035 786 LARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE---------YSDREMAKNDLNMATQLDPL 842 (855)
Q Consensus 786 lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~---------~g~~eeA~~~~~kAl~l~P~ 842 (855)
++.++..+ .++.|...+.++++..-....+++.+.+ .++-+-+...+.+.-+..|.
T Consensus 2893 iakvLwLl-s~dda~~~l~~~~~k~l~~ip~~~wl~~IPQLl~sLs~~e~~~~~~iL~kia~~yPQ 2957 (3550)
T KOG0889|consen 2893 IAKVLWLL-SFDDSLGTLGDVFDKFLGEIPVWNWLYFIPQLLTSLSKKEAKLVRLILIKIAKSYPQ 2957 (3550)
T ss_pred HHHHHHHH-HhccccchHHHHHHHhhccCCchhhhhhhHHHHhhccccchhHHHHHHHHHHHhchH
Confidence 77777665 3455556666777766555555666555 34444444455444444443
No 424
>PRK11619 lytic murein transglycosylase; Provisional
Probab=61.68 E-value=3.7e+02 Score=32.74 Aligned_cols=120 Identities=9% Similarity=0.017 Sum_probs=63.4
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhccC---Ch--HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCC-HHHHHH
Q 003035 679 YEGWILYDTGHREEALSRAEKSISIER---TF--EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR-KGQALN 752 (855)
Q Consensus 679 ~lg~~~~~~g~~~eAl~~~~kal~~~p---~~--~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~-p~~a~~ 752 (855)
.+|.......+.+.|...+.+...... +. .++..+|.-....+..++|... +..+. ... .+...-
T Consensus 246 ~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w----~~~~~-----~~~~~~~~~e 316 (644)
T PRK11619 246 AVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKW----RDDVI-----MRSQSTSLLE 316 (644)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHH----HHhcc-----cccCCcHHHH
Confidence 344444556666777777776533332 11 3334444444444335566666 55544 111 111112
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003035 753 NLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLL 807 (855)
Q Consensus 753 ~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal 807 (855)
..-.+....++++.+...+...-... .....|-+|+.+..+|+.++|...|+++.
T Consensus 317 ~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 317 RRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 22223335666666665555532222 56677777777777777777777777764
No 425
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=61.43 E-value=82 Score=33.01 Aligned_cols=46 Identities=20% Similarity=0.305 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhcc-------cH---HHHHHHHHHH-HHcCCHHHHHHHHHHHHHH
Q 003035 764 LDQAENCYINALDIK-------HT---RAHQGLARVY-YLKNELKAAYDEMTKLLEK 809 (855)
Q Consensus 764 ~~~A~~~~~kAL~~~-------~~---~a~~~lg~~~-~~~g~~~~A~~~~~kal~~ 809 (855)
.++|.++|++|+++. +| ....|++..| ...|+.++|++..++++..
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 478899999998765 22 2334555555 4478999999998888764
No 426
>PF13041 PPR_2: PPR repeat family
Probab=60.35 E-value=25 Score=26.61 Aligned_cols=38 Identities=21% Similarity=0.195 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc---cHHHHHHH
Q 003035 749 QALNNLGSIYVECGKLDQAENCYINALDIK---HTRAHQGL 786 (855)
Q Consensus 749 ~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~---~~~a~~~l 786 (855)
..|+.+=..|.+.|++++|.+.|++..+.. +...+..+
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~l 44 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNIL 44 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 356666677777777777777777777665 44444443
No 427
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=59.76 E-value=2.2e+02 Score=32.39 Aligned_cols=123 Identities=15% Similarity=0.056 Sum_probs=69.0
Q ss_pred HHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCC---CCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-cHH-
Q 003035 710 FFLKAYILADTNLDPESSTYVIQLLEEALRCPSDG---LRKG---QALNNLGSIYVECGKLDQAENCYINALDIK-HTR- 781 (855)
Q Consensus 710 ~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~---~~p~---~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~-~~~- 781 (855)
...+..++.-.|+|..|++. ++..- ..... .-|. ..++.+|.+|..+++|.+|++.|...|--- ...
T Consensus 125 ligLlRvh~LLGDY~~Alk~----l~~id-l~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~ 199 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKV----LENID-LNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKN 199 (404)
T ss_pred HHHHHHHHHhccCHHHHHHH----hhccC-cccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34556678888999988888 55331 10000 1112 788899999999999999999999887532 111
Q ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHHccC--CHHH----HHHHhh------cCCHHHHHHHHHHHH
Q 003035 782 AHQGLARVYYL-KNELKAAYDEMTKLLEKAQY--SASA----FEKRSE------YSDREMAKNDLNMAT 837 (855)
Q Consensus 782 a~~~lg~~~~~-~g~~~~A~~~~~kal~~~p~--~~~a----~~~lg~------~g~~eeA~~~~~kAl 837 (855)
.+.....-+.. .+..++....+-=++.+.|. +-.+ ..+.|+ .|+.+.-.+.|..|-
T Consensus 200 ~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lkeky~ek~~kmq~gd~~~f~elF~~ac 268 (404)
T PF10255_consen 200 QYHQRSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLKEKYGEKMEKMQRGDEEAFEELFSFAC 268 (404)
T ss_pred hhccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhhC
Confidence 11111111111 12334444444445555664 2222 223333 666666666776655
No 428
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=58.49 E-value=2.9e+02 Score=30.45 Aligned_cols=29 Identities=28% Similarity=0.208 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 003035 657 KAAMRCLRLARNHSSSEHERLVYEGWILY 685 (855)
Q Consensus 657 ~~A~~~l~~al~~~p~~~~~~~~lg~~~~ 685 (855)
++|+..=+-...+.|..++++-.++.+++
T Consensus 213 ~EairLgRll~~L~p~EPE~~GL~ALmll 241 (415)
T COG4941 213 DEAIRLGRLLARLLPGEPEALGLLALMLL 241 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 45555555556666666666655554443
No 429
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=58.44 E-value=1.4e+02 Score=33.66 Aligned_cols=53 Identities=15% Similarity=0.073 Sum_probs=41.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Q 003035 645 RQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRA 697 (855)
Q Consensus 645 ~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~ 697 (855)
.+..+|++.++.+.|+..-.+.+.++|...--+...|.+...+.+|.+|-+.+
T Consensus 233 klv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSa 285 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSA 285 (569)
T ss_pred HHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888888888888888887777777888888888888776554
No 430
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=56.76 E-value=44 Score=34.33 Aligned_cols=59 Identities=17% Similarity=0.096 Sum_probs=51.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh
Q 003035 649 LLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (855)
Q Consensus 649 ~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~ 707 (855)
-+++.+...+|+...+.-++-+|.+......+=.++.-.|++++|+..++-+-++.|++
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 35677888999999999899999988888888888899999999999999998888887
No 431
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=56.25 E-value=31 Score=25.86 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=18.1
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHc
Q 003035 519 KYRAVAKMEEGQIRAAISEIDRIIV 543 (855)
Q Consensus 519 ~~~a~~~~~~~~~~~A~~~~~k~l~ 543 (855)
+.+|..|++.|+.+.|.+.+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3467777777777777777777774
No 432
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=56.03 E-value=91 Score=33.23 Aligned_cols=111 Identities=20% Similarity=0.113 Sum_probs=76.2
Q ss_pred HHHHhcCCCCCCCHH--HHHHHHHHHHHHc--CCHHHHHHHHHHHHhcc--cHHHHHHHHHHH------HHcCCHHHHHH
Q 003035 734 LEEALRCPSDGLRKG--QALNNLGSIYVEC--GKLDQAENCYINALDIK--HTRAHQGLARVY------YLKNELKAAYD 801 (855)
Q Consensus 734 le~al~~~~~~~~p~--~a~~~LG~~y~~~--g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~------~~~g~~~~A~~ 801 (855)
+..++ .-.|. ++|+..-.++..- .++..-+..-++.++.+ |..++...-++. ....++..-.+
T Consensus 97 ~~~~l-----k~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~e 171 (328)
T COG5536 97 LDEAL-----KDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELE 171 (328)
T ss_pred HHHHH-----hcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHH
Confidence 66666 55565 8888877777654 45666666777888877 555444333333 22234455567
Q ss_pred HHHHHHHHccCCHHHHHHHhh-----------cCC--HHHHHHHHHHHHhcCCCCcccchh
Q 003035 802 EMTKLLEKAQYSASAFEKRSE-----------YSD--REMAKNDLNMATQLDPLRTYPYRY 849 (855)
Q Consensus 802 ~~~kal~~~p~~~~a~~~lg~-----------~g~--~eeA~~~~~kAl~l~P~~~~~~~~ 849 (855)
+-..+|+.++.|.++|.++-. ..+ +++-+.+.-.++-.+|++..+|.|
T Consensus 172 ytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y 232 (328)
T COG5536 172 YTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGY 232 (328)
T ss_pred hHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhH
Confidence 777888899999999998833 122 567778888888889999998876
No 433
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.46 E-value=1.8e+02 Score=32.76 Aligned_cols=103 Identities=23% Similarity=0.300 Sum_probs=66.3
Q ss_pred HHHHhcCCCCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003035 734 LEEALRCPSDGLRKG---QALNNLGSIYVECGKLDQAENCYINALDIK-----HTRAHQGLARVYYLKNELKAAYDEMTK 805 (855)
Q Consensus 734 le~al~~~~~~~~p~---~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~-----~~~a~~~lg~~~~~~g~~~~A~~~~~k 805 (855)
++.=++...++.-.. .++..+|.-|...|+++.|+++|-++-..- -+..+.++-.|-...|+|..-..+-.+
T Consensus 133 L~~eLk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~ 212 (466)
T KOG0686|consen 133 LDNELKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISK 212 (466)
T ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHH
Confidence 444443333333333 788889999999999999999998854432 244566666677777888766666666
Q ss_pred HHHH----------ccCCHHHHHHHhh--cCCHHHHHHHHHHH
Q 003035 806 LLEK----------AQYSASAFEKRSE--YSDREMAKNDLNMA 836 (855)
Q Consensus 806 al~~----------~p~~~~a~~~lg~--~g~~eeA~~~~~kA 836 (855)
|... -|.-...+-.++. .++|..|.+++-.+
T Consensus 213 A~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 213 AESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred HHhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6543 1222344445555 67888888877544
No 434
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=54.90 E-value=47 Score=35.24 Aligned_cols=61 Identities=21% Similarity=0.028 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHcc-CCCHhHHHHHHHHHHH
Q 003035 500 KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVF-KLSVDCLELRAWLFIA 560 (855)
Q Consensus 500 A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~-~p~~~~l~lra~~y~~ 560 (855)
|...|.+|+.+.|++..+|..+|.+....|+.-.|+-.|-+++.. .|.+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 567799999999999999999999999999999999999999863 4555555544444444
No 435
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.79 E-value=1.6e+02 Score=32.03 Aligned_cols=94 Identities=13% Similarity=0.072 Sum_probs=61.6
Q ss_pred HHHHHHHhhcccccchhhHHHHHHHHhhchh-----hHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHh----cchhh
Q 003035 383 LYYFLSQVAMEKDRVSNTTVMLLERLGECST-----ERWQRMLALHQLGCVMFEREEYKDACYYFEAAADA----GHIYS 453 (855)
Q Consensus 383 l~~~La~~~~~~~~~~~~a~~~le~~~~~~~-----~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~----~~~~a 453 (855)
....||.+|-.+++ +..|.+.|.-.- .++ +...+...+..+|.+|++.++..+|+.+.+++-=+ .+...
T Consensus 105 irl~LAsiYE~Eq~-~~~aaq~L~~I~-~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~L 182 (399)
T KOG1497|consen 105 IRLHLASIYEKEQN-WRDAAQVLVGIP-LDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQL 182 (399)
T ss_pred HHHHHHHHHHHhhh-HHHHHHHHhccC-cccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHH
Confidence 46678888887777 878777765432 222 22346667789999999999999999988876321 11111
Q ss_pred ----hhhHHHHHHHhCChHHHHHHHHhHH
Q 003035 454 ----LAGLARAKYKVGQQYSAYKLINSII 478 (855)
Q Consensus 454 ----~~~la~~~~~~g~~~~A~~~l~~~i 478 (855)
-.--||+.-.++++-+|-..|.++.
T Consensus 183 qie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 183 QIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223677777777777776666543
No 436
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=54.72 E-value=26 Score=23.15 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHHHHHccCCHHHHHHHh
Q 003035 794 NELKAAYDEMTKLLEKAQYSASAFEKRS 821 (855)
Q Consensus 794 g~~~~A~~~~~kal~~~p~~~~a~~~lg 821 (855)
|+.+.|...|++++...|.++..|....
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 4567777888888888887777776554
No 437
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=53.99 E-value=3.1e+02 Score=29.51 Aligned_cols=118 Identities=14% Similarity=0.114 Sum_probs=75.9
Q ss_pred CCHHHHHHHHHHHHhc----cCCh---HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHH
Q 003035 688 GHREEALSRAEKSISI----ERTF---EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIY 758 (855)
Q Consensus 688 g~~~eAl~~~~kal~~----~p~~---~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y 758 (855)
+.-++-++.+.+.|+. +-+. +++.++|.-|.+.++.+.+.+..-+++++++.. ...-+ -.-..||.+|
T Consensus 89 kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~st---g~KiDv~l~kiRlg~~y 165 (412)
T COG5187 89 KKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMST---GLKIDVFLCKIRLGLIY 165 (412)
T ss_pred HhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc---ccchhhHHHHHHHHHhh
Confidence 3344555555444432 3222 889999999999999999999977777777711 11222 4455688888
Q ss_pred HHcCCHHHHHHHHHHHHhcc-cHHHHH----HHHHHHHHcCCHHHHHHHHHHHHH
Q 003035 759 VECGKLDQAENCYINALDIK-HTRAHQ----GLARVYYLKNELKAAYDEMTKLLE 808 (855)
Q Consensus 759 ~~~g~~~~A~~~~~kAL~~~-~~~a~~----~lg~~~~~~g~~~~A~~~~~kal~ 808 (855)
.++.=.++.++.....++.. ++.-.+ ..|.......++.+|-..+..++.
T Consensus 166 ~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 166 GDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILP 220 (412)
T ss_pred ccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 88776777777777777666 443221 234445555678888877776664
No 438
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=53.72 E-value=68 Score=27.14 Aligned_cols=19 Identities=16% Similarity=0.160 Sum_probs=14.2
Q ss_pred HhhhhcHHHHHHHHHHHHH
Q 003035 429 MFEREEYKDACYYFEAAAD 447 (855)
Q Consensus 429 ~l~~g~~~eA~~~~~~Al~ 447 (855)
+-+.|++.+|+.+|+++++
T Consensus 16 ~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 16 AEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHhcCCHHHHHHHHHHHHH
Confidence 3446888999988887764
No 439
>PF12854 PPR_1: PPR repeat
Probab=52.95 E-value=27 Score=24.30 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=18.2
Q ss_pred CHH-HHHHHHHHHHHHcCCHHHHHHHHHH
Q 003035 746 RKG-QALNNLGSIYVECGKLDQAENCYIN 773 (855)
Q Consensus 746 ~p~-~a~~~LG~~y~~~g~~~~A~~~~~k 773 (855)
.|+ -.|+.|-..|.+.|+.++|.+.+++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 445 5666666667777777777766654
No 440
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=52.69 E-value=1.3e+02 Score=31.15 Aligned_cols=59 Identities=17% Similarity=0.140 Sum_probs=50.1
Q ss_pred HHHHhCCHHHHHHHHHHHHccCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchh
Q 003035 524 AKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYM 582 (855)
Q Consensus 524 ~~~~~~~~~~A~~~~~k~l~~~p-~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~ 582 (855)
-+++.++.++|+.....-++-+| +....++...++.-.|++++|...++-+-++.|++.
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 56778889999999988888888 456777778888999999999999999999998864
No 441
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=51.86 E-value=37 Score=38.45 Aligned_cols=92 Identities=20% Similarity=0.178 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHH
Q 003035 750 ALNNLGSIYVECGKLDQAENCYINALDIK-----------HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFE 818 (855)
Q Consensus 750 a~~~LG~~y~~~g~~~~A~~~~~kAL~~~-----------~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~ 818 (855)
+...|..++.-.|+|..|++.++.. +++ +...++..|.+|..+++|.+|+..|..++-.-...-..+.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~ 202 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYH 202 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 3344567778899999999987542 222 5678999999999999999999999998864322221111
Q ss_pred HHhh-----cCCHHHHHHHHHHHHhcCCC
Q 003035 819 KRSE-----YSDREMAKNDLNMATQLDPL 842 (855)
Q Consensus 819 ~lg~-----~g~~eeA~~~~~kAl~l~P~ 842 (855)
.... .+..|+....+--++.+.|.
T Consensus 203 ~~~~q~d~i~K~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 203 QRSYQYDQINKKNEQMYALLAICLSLCPQ 231 (404)
T ss_pred cccchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence 1111 34555555555555665664
No 442
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=51.86 E-value=1.9e+02 Score=32.65 Aligned_cols=123 Identities=19% Similarity=0.112 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc-cCChH--HHH--HHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH-H
Q 003035 676 RLVYEGWILYDTGHREEALSRAEKSISI-ERTFE--AFF--LKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG-Q 749 (855)
Q Consensus 676 ~~~~lg~~~~~~g~~~eAl~~~~kal~~-~p~~~--a~~--~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~-~ 749 (855)
.....+..+++.++|..|.+.++..... .++.. .+. ..|+-+.+.-++.+|.+. ++..++.... +... .
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~----l~~~~~~~~~-l~~~~~ 207 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEY----LEKLLKRDKA-LNQERE 207 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHH----HHHHHHHhhh-hHhHHH
Confidence 3355677888999999999999999885 33333 333 356777889999999999 8877721110 0000 1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcc-c---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 003035 750 ALNNLGSIYVECGKLDQAENCYINALDIK-H---------TRAHQGLARVYYLKNELKAAYDEMTKLLEKA 810 (855)
Q Consensus 750 a~~~LG~~y~~~g~~~~A~~~~~kAL~~~-~---------~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~ 810 (855)
.+..+..+ -++...+....... . ...++.-|.--..+|+|+.|+..+-+++++-
T Consensus 208 ~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~ 271 (379)
T PF09670_consen 208 GLKELVEV-------LKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELL 271 (379)
T ss_pred HHHHHHHH-------HHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 22222222 22222222222222 1 0111222222235789999999999999863
No 443
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=51.31 E-value=2.7e+02 Score=30.68 Aligned_cols=87 Identities=16% Similarity=0.169 Sum_probs=58.1
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q 003035 626 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH--SSSEHERLVYEGWILYDTGHREEALSRAEKSISI 703 (855)
Q Consensus 626 l~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~--~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~ 703 (855)
+..++.++..-..++.+-.+.+..+....-...++...+..... -.+..-.+-..|..+.+.|+.++|-..|++++.+
T Consensus 315 I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 315 IDALYDALEQAAPSPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred HHHHHHHHHHhCCCCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 34455566655556666666666666555577777777666554 2233445566788888888888888888888888
Q ss_pred cCCh-HHHHH
Q 003035 704 ERTF-EAFFL 712 (855)
Q Consensus 704 ~p~~-~a~~~ 712 (855)
.++. +..+.
T Consensus 395 a~~~aer~~l 404 (415)
T COG4941 395 ARNAAERAFL 404 (415)
T ss_pred cCChHHHHHH
Confidence 8776 44443
No 444
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=51.19 E-value=4.1e+02 Score=30.05 Aligned_cols=63 Identities=14% Similarity=-0.025 Sum_probs=47.5
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHccCC---CHh--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchh
Q 003035 520 YRAVAKMEEGQIRAAISEIDRIIVFKL---SVD--CLELRAWLFIAADDYESALRDTLALLALESNYM 582 (855)
Q Consensus 520 ~~a~~~~~~~~~~~A~~~~~k~l~~~p---~~~--~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~ 582 (855)
.+-+.|+..+.|+.|-....+..-... +.. .++..|.+..-+++|..|.+.+-+++...|++.
T Consensus 214 ~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 214 LLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 355688889999999887777652211 122 344568898999999999999999999999854
No 445
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=50.50 E-value=2.2e+02 Score=26.63 Aligned_cols=37 Identities=11% Similarity=-0.126 Sum_probs=24.7
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHC
Q 003035 651 LRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDT 687 (855)
Q Consensus 651 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~ 687 (855)
...+.....+.+++.++..++.++..+..+..+|...
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY 54 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence 4456677777777777777666666666666666543
No 446
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=50.35 E-value=66 Score=34.50 Aligned_cols=59 Identities=20% Similarity=0.274 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003035 750 ALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLE 808 (855)
Q Consensus 750 a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~ 808 (855)
.++..+..|...|.+.+|+++.+++++.+ +...+..+-.++...||--.|++.|++.-+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 34455778899999999999999999999 888888999999999998888888876543
No 447
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=49.91 E-value=67 Score=33.84 Aligned_cols=62 Identities=11% Similarity=-0.117 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHH
Q 003035 708 EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG---QALNNLGSIYVECGKLDQAENCYIN 773 (855)
Q Consensus 708 ~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~---~a~~~LG~~y~~~g~~~~A~~~~~k 773 (855)
.....+|..|...|++++|.+. |+.+......+--.. .+...+-.|+...|+.++.+...-+
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~----l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKL----LEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHH----HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3344556666666666666666 555541110000001 5555666777777777766655443
No 448
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=49.82 E-value=1.3e+02 Score=28.26 Aligned_cols=39 Identities=10% Similarity=0.088 Sum_probs=26.8
Q ss_pred hHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 003035 625 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLR 664 (855)
Q Consensus 625 al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~ 664 (855)
.+..+...+..++.++..+..+..++.+. +..+.+..++
T Consensus 26 l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 26 LIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 45567777788777777888887777655 3455555555
No 449
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=49.28 E-value=3.9e+02 Score=29.18 Aligned_cols=146 Identities=12% Similarity=0.025 Sum_probs=86.9
Q ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----ccCCh-HHHHHHHHHHHHCCCC---
Q 003035 652 RLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS----IERTF-EAFFLKAYILADTNLD--- 723 (855)
Q Consensus 652 ~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~----~~p~~-~a~~~lg~~~~~~g~~--- 723 (855)
.+++..+.++..++.+..+|---+.+++.+.++.+.|. +++....+..+. .-|.. ...| +.|-.
T Consensus 111 ~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG~-~~~a~aI~~el~~fL~RlP~L~~L~F-------~DGtPFad 182 (301)
T TIGR03362 111 AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLGY-AAVAQAIRDELAAFLERLPGLLELKF-------SDGTPFAD 182 (301)
T ss_pred hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhCcChhhccc-------CCCCCCCC
Confidence 56677888888888888888888888888888888884 444444443333 23433 2222 12211
Q ss_pred chhHHHHHHHHHHHhcCCC-------CCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----cHHHHHHHHH
Q 003035 724 PESSTYVIQLLEEALRCPS-------DGLRKG---QALNNLGSIYVECGKLDQAENCYINALDIK-----HTRAHQGLAR 788 (855)
Q Consensus 724 ~~A~~~~~~lle~al~~~~-------~~~~p~---~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~-----~~~a~~~lg~ 788 (855)
++.... +........ .....+ .....-+....+.|.+++|+..++..+.-. .......++.
T Consensus 183 ~~T~~W----L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~ 258 (301)
T TIGR03362 183 DETRAW----LAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLAR 258 (301)
T ss_pred HHHHHH----HHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHH
Confidence 111222 222110000 000000 111122455677889999999998876543 3445667888
Q ss_pred HHHHcCCHHHHHHHHHHHHHH
Q 003035 789 VYYLKNELKAAYDEMTKLLEK 809 (855)
Q Consensus 789 ~~~~~g~~~~A~~~~~kal~~ 809 (855)
++...|..+-|...|++..+.
T Consensus 259 l~~~~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 259 LLEQAGKAELAQQLYAALDQQ 279 (301)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999888765
No 450
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.27 E-value=2.4e+02 Score=35.32 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=22.8
Q ss_pred hhhHHHHHHHhCChHHHHHHHHhHHHcC
Q 003035 454 LAGLARAKYKVGQQYSAYKLINSIISEH 481 (855)
Q Consensus 454 ~~~la~~~~~~g~~~~A~~~l~~~i~~~ 481 (855)
+..|+.+|...|+.++|++.++++....
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~ 534 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDED 534 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccc
Confidence 4667888999999999999988887644
No 451
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=47.13 E-value=7.1 Score=42.23 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=38.5
Q ss_pred hcCChhhHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhcCChh
Q 003035 317 LVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPK 359 (855)
Q Consensus 317 ~l~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~v~~~~~ 359 (855)
.++ ++||+.|+-=+.....+.|.+.|+.|+..|+.+|+.++-
T Consensus 71 ~l~-~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~~~Iv~~~~ 112 (317)
T PF11822_consen 71 SLT-PSNVVSILISSEFLQMESLVEECLQYCHDHMSEIVASPC 112 (317)
T ss_pred cCC-cCcEEEeEehhhhhccHHHHHHHHHHHHHhHHHHHcCCC
Confidence 456 999999999999999999999999999999999998764
No 452
>PF13041 PPR_2: PPR repeat family
Probab=46.95 E-value=63 Score=24.33 Aligned_cols=37 Identities=11% Similarity=0.121 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHhCCHHHHHHHHHHHHc--cCCCHhHHH
Q 003035 516 FPYKYRAVAKMEEGQIRAAISEIDRIIV--FKLSVDCLE 552 (855)
Q Consensus 516 ~a~~~~a~~~~~~~~~~~A~~~~~k~l~--~~p~~~~l~ 552 (855)
..|.-+-..+.+.|++++|.+.|++..+ ..|+...+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~ 42 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYN 42 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 4555666788899999999999999986 455554443
No 453
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=46.47 E-value=42 Score=22.06 Aligned_cols=28 Identities=11% Similarity=-0.090 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 003035 654 NCQKAAMRCLRLARNHSSSEHERLVYEG 681 (855)
Q Consensus 654 g~~~~A~~~l~~al~~~p~~~~~~~~lg 681 (855)
|+.+.|...|++++...|..+..|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 3456667777777777776666665443
No 454
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=45.72 E-value=4.4e+02 Score=28.95 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 003035 675 ERLVYEGWILYDTGHREEALSRAEKSIS 702 (855)
Q Consensus 675 ~~~~~lg~~~~~~g~~~eAl~~~~kal~ 702 (855)
+++...|..|.+.|+.+.|++.+++..+
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ 132 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYE 132 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4445555555555555555555544433
No 455
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=45.09 E-value=1.1e+02 Score=28.42 Aligned_cols=63 Identities=11% Similarity=0.014 Sum_probs=50.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcc-c----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----H
Q 003035 751 LNNLGSIYVECGKLDQAENCYINALDIK-H----------------TRAHQGLARVYYLKNELKAAYDEMTKLLE----K 809 (855)
Q Consensus 751 ~~~LG~~y~~~g~~~~A~~~~~kAL~~~-~----------------~~a~~~lg~~~~~~g~~~~A~~~~~kal~----~ 809 (855)
+..+|....+.+++-.|+-+|++|+.+. + .....|||..+..+|+.+-.+++++-|-+ +
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 5678899999999999999999999764 1 23467999999999999999998765544 4
Q ss_pred ccCC
Q 003035 810 AQYS 813 (855)
Q Consensus 810 ~p~~ 813 (855)
-|+.
T Consensus 84 iPQC 87 (140)
T PF10952_consen 84 IPQC 87 (140)
T ss_pred ccCC
Confidence 5554
No 456
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=44.99 E-value=38 Score=40.50 Aligned_cols=165 Identities=15% Similarity=0.117 Sum_probs=96.7
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh------HHHHHHHHHHHH---CCCCchhHHHHHHHHHHHhcCCCC
Q 003035 673 EHERLVYEGWILYDTGHREEALSRAEKSISIERTF------EAFFLKAYILAD---TNLDPESSTYVIQLLEEALRCPSD 743 (855)
Q Consensus 673 ~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~------~a~~~lg~~~~~---~g~~~~A~~~~~~lle~al~~~~~ 743 (855)
.++...++-..|.+..+|+.-++..+..-.+-... ...|..+.++.+ .|+-++|+..++++.++--
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg----- 274 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEG----- 274 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcC-----
Confidence 46667778888888888888887776654442111 233455555544 4566777777555555333
Q ss_pred CCCHHHHHHHHHHHH---------HHcCCHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHc--
Q 003035 744 GLRKGQALNNLGSIY---------VECGKLDQAENCYINALDIK-HTRAHQGLARVYYLKN-ELKAAYDEMTKLLEKA-- 810 (855)
Q Consensus 744 ~~~p~~a~~~LG~~y---------~~~g~~~~A~~~~~kAL~~~-~~~a~~~lg~~~~~~g-~~~~A~~~~~kal~~~-- 810 (855)
...|+ .|-.-|.+| .+.+..+.|++.|++|.+.. ....-.|++.++...| .++...+.=.-.++++
T Consensus 275 ~vapD-m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~~Fens~Elq~IgmkLn~L 353 (1226)
T KOG4279|consen 275 PVAPD-MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGEHFENSLELQQIGMKLNSL 353 (1226)
T ss_pred CCCCc-eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhhhccchHHHHHHHHHHHHH
Confidence 34443 333334444 44567889999999999887 4444445555555555 3333333322222221
Q ss_pred ----------cCCHHHHHHHhh---cCCHHHHHHHHHHHHhcCCCC
Q 003035 811 ----------QYSASAFEKRSE---YSDREMAKNDLNMATQLDPLR 843 (855)
Q Consensus 811 ----------p~~~~a~~~lg~---~g~~eeA~~~~~kAl~l~P~~ 843 (855)
..+.++-..++. .+++.+|+..-++..+++|-.
T Consensus 354 lgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 354 LGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred hhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 111222222232 789999999999999998753
No 457
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.79 E-value=6.8e+02 Score=30.76 Aligned_cols=38 Identities=13% Similarity=-0.011 Sum_probs=27.0
Q ss_pred HHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003035 631 QMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARN 668 (855)
Q Consensus 631 ~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~ 668 (855)
..++.+..+..+.-.++.+|+..|+|..|+..|-++.+
T Consensus 496 ~q~~q~Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 496 PQIKQNSESTALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred hHHHhhccchhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 34444555545555588899999999999998876543
No 458
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=44.63 E-value=1.9e+02 Score=31.68 Aligned_cols=95 Identities=12% Similarity=0.092 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh----HH
Q 003035 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS------EHERLVYEGWILYDTGHREEALSRAEKSISIERTF----EA 709 (855)
Q Consensus 640 ~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~------~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~----~a 709 (855)
..++.++|..|.+.|+-+.|.+.+++..+..-. -.-....+|..|.+..-..+-++..+..++.--++ ..
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 456778888888999999888888776554311 11122345666666555666666666666655554 22
Q ss_pred HHHHHHHHHHCCCCchhHHHHHHHHHHHh
Q 003035 710 FFLKAYILADTNLDPESSTYVIQLLEEAL 738 (855)
Q Consensus 710 ~~~lg~~~~~~g~~~~A~~~~~~lle~al 738 (855)
-...|.-.....++.+|... |-..+
T Consensus 184 KvY~Gly~msvR~Fk~Aa~L----fld~v 208 (393)
T KOG0687|consen 184 KVYQGLYCMSVRNFKEAADL----FLDSV 208 (393)
T ss_pred HHHHHHHHHHHHhHHHHHHH----HHHHc
Confidence 22334444455555555555 55555
No 459
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=44.27 E-value=31 Score=30.72 Aligned_cols=30 Identities=17% Similarity=0.172 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 003035 321 IEDALILIDYGLEERATLLVASCLQVLLRE 350 (855)
Q Consensus 321 ~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~ 350 (855)
.+++..++.+|..++.+.|.+.|..++.++
T Consensus 81 ~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 81 DENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 789999999999999999999999999876
No 460
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=42.11 E-value=31 Score=39.22 Aligned_cols=45 Identities=11% Similarity=0.251 Sum_probs=38.8
Q ss_pred cCChhhHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhcCChhHHhhhcC
Q 003035 318 VGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKIFCS 366 (855)
Q Consensus 318 l~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~v~~~~~f~~ll~~ 366 (855)
+. .+||+.++..|+.|..+.|.+.|.+||.+++.. ..+|+.|...
T Consensus 185 ~~-~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~---~naf~~L~q~ 229 (521)
T KOG2075|consen 185 LA-ADTVITTLYAAKKYLVPALERQCVKFLRKNLMA---DNAFLELFQR 229 (521)
T ss_pred hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC---hHHHHHHHHH
Confidence 45 899999999999999999999999999988654 5677777764
No 461
>PRK12798 chemotaxis protein; Reviewed
Probab=41.95 E-value=5.7e+02 Score=29.09 Aligned_cols=179 Identities=13% Similarity=0.046 Sum_probs=91.7
Q ss_pred HHHHHHHHcCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHH-HHHHHHHHCCCHHHHHHHHHHHHhc
Q 003035 627 AVINQMLINDPG-KSFLRFRQSLLLLRLNCQKAAMRCLRLARNH-SSSEHERLV-YEGWILYDTGHREEALSRAEKSISI 703 (855)
Q Consensus 627 ~~~~~~l~~~p~-~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~-~p~~~~~~~-~lg~~~~~~g~~~eAl~~~~kal~~ 703 (855)
.++..++..++. +.......|.+-+-.|+-.+|.+.+...-.. .|..-..+. ...-..+...+..+|+..|+.+-=.
T Consensus 98 ~vlr~L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl 177 (421)
T PRK12798 98 ATLRKLLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL 177 (421)
T ss_pred HHHHHHHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh
Confidence 345555555543 3444455555666667777776666443211 111122222 2233344556677777777777777
Q ss_pred cCCh---HHHHHHHHHH-HHCCCCchhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-c
Q 003035 704 ERTF---EAFFLKAYIL-ADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI-K 778 (855)
Q Consensus 704 ~p~~---~a~~~lg~~~-~~~g~~~~A~~~~~~lle~al~~~~~~~~p~~a~~~LG~~y~~~g~~~~A~~~~~kAL~~-~ 778 (855)
-|.. ++-....... .+.|+.++...+.++.+++... ...-++++-.........++-.. .+.+...+.. +
T Consensus 178 aPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~----S~YA~~F~~~F~~~~~~~~d~~~-~~~l~~~ls~~d 252 (421)
T PRK12798 178 APGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRH----SPYASQFAQRFVDLVVRLDDEIR-DARLVEILSFMD 252 (421)
T ss_pred CCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhcc----CchHHHHHHHHHHHHHhcccccc-HHHHHHHHHhcC
Confidence 7765 4444444333 5667777766665555555541 11112444444444444332111 1223344432 2
Q ss_pred ---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 003035 779 ---HTRAHQGLARVYYLKNELKAAYDEMTKLLEKA 810 (855)
Q Consensus 779 ---~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~ 810 (855)
...+|..+++.-...|+.+-|...-++++.+.
T Consensus 253 ~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~ 287 (421)
T PRK12798 253 PERQRELYLRIARAALIDGKTELARFASERALKLA 287 (421)
T ss_pred chhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhc
Confidence 34566666666666777777777777776664
No 462
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=41.67 E-value=1.7e+02 Score=24.78 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=9.7
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 003035 758 YVECGKLDQAENCYINAL 775 (855)
Q Consensus 758 y~~~g~~~~A~~~~~kAL 775 (855)
+-..|++.+|+.+|++++
T Consensus 16 ~D~~gr~~eAi~~Y~~aI 33 (75)
T cd02682 16 AEKEGNAEDAITNYKKAI 33 (75)
T ss_pred HHhcCCHHHHHHHHHHHH
Confidence 444566666666654443
No 463
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=40.35 E-value=5.7e+02 Score=30.03 Aligned_cols=158 Identities=13% Similarity=0.111 Sum_probs=89.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-hcCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc-CCh-HHHHH--HHHHH
Q 003035 644 FRQSLLLLRLNCQKAAMRCLRLAR-NHSSSE-HERLVYEGWILYDTGHREEALSRAEKSISIE-RTF-EAFFL--KAYIL 717 (855)
Q Consensus 644 ~~~a~~l~~~g~~~~A~~~l~~al-~~~p~~-~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~-p~~-~a~~~--lg~~~ 717 (855)
...+.++.+.|+.+.|...+.+.- ++.|.. .+.-...|.+...++++..|...+.+...-+ |.. .+.+. .+.+.
T Consensus 67 llAa~al~~e~k~~qA~~Ll~ql~~~Ltd~Q~~~~~LL~ael~la~~q~~~Al~~L~~~~~~~ls~~Qq~Ry~q~~a~a~ 146 (604)
T COG3107 67 LLAARALVEEGKTAQAQALLNQLPQELTDAQRAEKSLLAAELALAQKQPAAALQQLAKLLPADLSQNQQARYYQARADAL 146 (604)
T ss_pred HHHHHHHHHcCChHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhccChHHHHHHHhhcchhhcCHHHHHHHHHHHHHHH
Confidence 344578899999999999998876 444432 2334567899999999999999998876543 333 45444 45555
Q ss_pred HHCCCCchhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--c----cHHHHHHHHHHHH
Q 003035 718 ADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--K----HTRAHQGLARVYY 791 (855)
Q Consensus 718 ~~~g~~~~A~~~~~~lle~al~~~~~~~~p~~a~~~LG~~y~~~g~~~~A~~~~~kAL~~--~----~~~a~~~lg~~~~ 791 (855)
...|+--+|.+..|. ++..+.-....-+-+..|..++.. .. ..+|.. + ....|..++++|.
T Consensus 147 ea~~~~~~a~rari~-~~~lL~~k~~q~nid~tW~ll~~~-~~-----------~~VIn~sa~e~~~~L~GWL~L~rv~~ 213 (604)
T COG3107 147 EARGDSIDAARARIA-QDPLLSGKAKQANIDKTWQLLSEQ-AN-----------TGVINNSADEGNAALQGWLDLARVYK 213 (604)
T ss_pred hcccchHHHHHHHHH-hhhhccchhHHHhHHHHHHHhhhh-cc-----------ccceecccCCcccccchHHHHHHHHH
Confidence 555554454444111 122220000000000444444410 00 011221 1 3457889999999
Q ss_pred HcC-CH---HHHHHHHHHHHHHccCCHHHH
Q 003035 792 LKN-EL---KAAYDEMTKLLEKAQYSASAF 817 (855)
Q Consensus 792 ~~g-~~---~~A~~~~~kal~~~p~~~~a~ 817 (855)
..+ +. ..+++.++ ..+|++|.+.
T Consensus 214 ~~~~~p~qlk~~i~~Wq---~~yPqhPaA~ 240 (604)
T COG3107 214 DNGSDPPQLKAGIEDWQ---KRYPQHPAAK 240 (604)
T ss_pred hcccCHHHHHHHHHHHH---hcCCCCchhh
Confidence 988 33 34555554 4567766553
No 464
>PF12854 PPR_1: PPR repeat
Probab=39.99 E-value=57 Score=22.64 Aligned_cols=27 Identities=11% Similarity=0.176 Sum_probs=22.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003035 779 HTRAHQGLARVYYLKNELKAAYDEMTK 805 (855)
Q Consensus 779 ~~~a~~~lg~~~~~~g~~~~A~~~~~k 805 (855)
|...|..+-..+.+.|+.++|.+.+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 566788888899999999999998875
No 465
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=39.79 E-value=54 Score=22.90 Aligned_cols=29 Identities=31% Similarity=0.634 Sum_probs=19.2
Q ss_pred HHHHhh--hhHhh-----hhcHHHHHHHHHHHHHhc
Q 003035 421 ALHQLG--CVMFE-----REEYKDACYYFEAAADAG 449 (855)
Q Consensus 421 a~~~LG--~~~l~-----~g~~~eA~~~~~~Al~~~ 449 (855)
+.+.|| ..|.. ..++++|.++|++|.+.+
T Consensus 3 A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g 38 (39)
T PF08238_consen 3 AQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQG 38 (39)
T ss_dssp HHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhhccCCccccccchHHHHHHHHHcc
Confidence 455666 33333 236899999999987654
No 466
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=39.77 E-value=6.2e+02 Score=28.87 Aligned_cols=161 Identities=17% Similarity=0.075 Sum_probs=87.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH-H-----HHHHHHHHHHHCCC--------------HHHHHHHHHHHHh
Q 003035 643 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH-E-----RLVYEGWILYDTGH--------------REEALSRAEKSIS 702 (855)
Q Consensus 643 ~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~-~-----~~~~lg~~~~~~g~--------------~~eAl~~~~kal~ 702 (855)
..++|.+.+-.++|+.|...|+.+.+-.-++. . ++-..|.++...+. .|.|...|.++-.
T Consensus 211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~ 290 (414)
T PF12739_consen 211 MRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSAL 290 (414)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhc
Confidence 34578899999999999999999887543321 1 12233444444442 3344444544211
Q ss_pred ---ccCCh--HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHH--HHcCCHHHHHHHHH
Q 003035 703 ---IERTF--EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR---KGQALNNLGSIY--VECGKLDQAENCYI 772 (855)
Q Consensus 703 ---~~p~~--~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~---p~~a~~~LG~~y--~~~g~~~~A~~~~~ 772 (855)
-.|.. .+....+.++...|.+.+|...+++...+.+ .+.+. ..-.+-.+|.+| ......-.-..-++
T Consensus 291 ~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l---~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~r~R 367 (414)
T PF12739_consen 291 PRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEIL---ESDLRPFGSALLLEQAAYCYASLRSNRPSPGLTRFR 367 (414)
T ss_pred cccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH---hhhhhhHhhHHHHHHHHHhhcccccCCCCccchhhH
Confidence 11223 5566677778888998888888555555533 11222 113444555555 22100000000011
Q ss_pred HHHhcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Q 003035 773 NALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQ 811 (855)
Q Consensus 773 kAL~~~~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p 811 (855)
|+ ..-+.--|.-|.+.|+...|...|.+++....
T Consensus 368 K~-----af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 368 KY-----AFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred HH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 11 11222335677778888888888888877643
No 467
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=39.56 E-value=6.4e+02 Score=28.99 Aligned_cols=209 Identities=13% Similarity=0.023 Sum_probs=117.5
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----
Q 003035 628 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI---- 703 (855)
Q Consensus 628 ~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~---- 703 (855)
+..+.+..-|--+.+|+.....+...++-+.|+...+.++...|. ..+.++..+...++-++--..|++.++-
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ 366 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRK 366 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHH
Confidence 346677777888888888888888899999999998888887776 5566666666666655555555554431
Q ss_pred --------------cCCh--HHHHH------HH-HHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH-HH
Q 003035 704 --------------ERTF--EAFFL------KA-YILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSI-YV 759 (855)
Q Consensus 704 --------------~p~~--~a~~~------lg-~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~~a~~~LG~~-y~ 759 (855)
+|.. +..+. ++ .++.+.-.-.+.++.+..+|-++-+.+ -..+ ++|..-|.+ |.
T Consensus 367 ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~--~~~h-~vyi~~A~~E~~ 443 (660)
T COG5107 367 YSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEG--IVGH-HVYIYCAFIEYY 443 (660)
T ss_pred HhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccC--CCCc-ceeeeHHHHHHH
Confidence 1111 11110 00 011111111222222222254444211 0111 333322333 44
Q ss_pred HcCCHHHHHHHHHHHHhcc-cHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHccCC--HHHHHHHhh----cCCHHHHHH
Q 003035 760 ECGKLDQAENCYINALDIK-HTRAH-QGLARVYYLKNELKAAYDEMTKLLEKAQYS--ASAFEKRSE----YSDREMAKN 831 (855)
Q Consensus 760 ~~g~~~~A~~~~~kAL~~~-~~~a~-~~lg~~~~~~g~~~~A~~~~~kal~~~p~~--~~a~~~lg~----~g~~eeA~~ 831 (855)
..|++.-|...|+-.+... |..++ +.+-..+...|+-..|...|+++++.-.+. -..|...-. .|+...+..
T Consensus 444 ~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~s 523 (660)
T COG5107 444 ATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYS 523 (660)
T ss_pred hcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHh
Confidence 5678888888888887766 44433 334445566788888888888888764443 334444433 677766655
Q ss_pred HHHHHHhcCCC
Q 003035 832 DLNMATQLDPL 842 (855)
Q Consensus 832 ~~~kAl~l~P~ 842 (855)
.=++-.++-|.
T Consensus 524 Le~rf~e~~pQ 534 (660)
T COG5107 524 LEERFRELVPQ 534 (660)
T ss_pred HHHHHHHHcCc
Confidence 55555554443
No 468
>PRK12798 chemotaxis protein; Reviewed
Probab=39.35 E-value=6.3e+02 Score=28.79 Aligned_cols=146 Identities=14% Similarity=0.067 Sum_probs=98.6
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh----HHHHHHHHHHHHCCCC
Q 003035 651 LRLNCQKAAMRCLRLARNHSSSEH---ERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFFLKAYILADTNLD 723 (855)
Q Consensus 651 ~~~g~~~~A~~~l~~al~~~p~~~---~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~----~a~~~lg~~~~~~g~~ 723 (855)
+...+..+|+..|..+.=..|..- -++...-.+....|+.+++..+..+.+..+... .++-.....+....+-
T Consensus 159 ~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~ 238 (421)
T PRK12798 159 MVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDE 238 (421)
T ss_pred hcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcccc
Confidence 445678889999999988888742 234444456678999999999999888887665 4444445555555422
Q ss_pred chhHHHHHHHHHHHhcCCCCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc------cHHHHHHHHHHHHHcC
Q 003035 724 PESSTYVIQLLEEALRCPSDGLRKG---QALNNLGSIYVECGKLDQAENCYINALDIK------HTRAHQGLARVYYLKN 794 (855)
Q Consensus 724 ~~A~~~~~~lle~al~~~~~~~~p~---~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~------~~~a~~~lg~~~~~~g 794 (855)
. .... +...+. ..+|. ..|..++..-...|+.+-|.-.-++|+.+. ...+....|....-..
T Consensus 239 ~-~~~~----l~~~ls----~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~ 309 (421)
T PRK12798 239 I-RDAR----LVEILS----FMDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASD 309 (421)
T ss_pred c-cHHH----HHHHHH----hcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcc
Confidence 2 3344 555551 33454 889999999999999999999999999887 2344444444444445
Q ss_pred CHHHHHHHHHH
Q 003035 795 ELKAAYDEMTK 805 (855)
Q Consensus 795 ~~~~A~~~~~k 805 (855)
+.++|++.+..
T Consensus 310 ~~~~al~~L~~ 320 (421)
T PRK12798 310 DAESALEELSQ 320 (421)
T ss_pred cHHHHHHHHhc
Confidence 66666666543
No 469
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=38.55 E-value=59 Score=27.51 Aligned_cols=34 Identities=24% Similarity=0.215 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 003035 763 KLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEK 809 (855)
Q Consensus 763 ~~~~A~~~~~kAL~~~~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~ 809 (855)
+.++|+...++|++.+ ..|++++|+..|..+++.
T Consensus 2 ~l~kai~Lv~~A~~eD-------------~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 2 DLERAHFLVTQAFDED-------------EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred CHHHHHHHHHHHHHhh-------------HhhhHHHHHHHHHHHHHH
No 470
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=36.85 E-value=86 Score=31.47 Aligned_cols=49 Identities=12% Similarity=-0.027 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccC
Q 003035 764 LDQAENCYINALDIK-HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQY 812 (855)
Q Consensus 764 ~~~A~~~~~kAL~~~-~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~ 812 (855)
.+..++..++.++.. ++.++.+++.++..+|+.++|...++++..+.|.
T Consensus 127 l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 344445556666666 8888888888888888888888888888888883
No 471
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=36.63 E-value=61 Score=27.73 Aligned_cols=24 Identities=25% Similarity=0.156 Sum_probs=11.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q 003035 753 NLGSIYVECGKLDQAENCYINALD 776 (855)
Q Consensus 753 ~LG~~y~~~g~~~~A~~~~~kAL~ 776 (855)
+.|..+-+.|+.++|+.+|++++.
T Consensus 13 ~kaL~~dE~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 13 SKALRADEWGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHhhhhhcCCHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 472
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=36.53 E-value=3.6e+02 Score=25.14 Aligned_cols=42 Identities=7% Similarity=-0.059 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhcc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003035 766 QAENCYINALDIK----HTRAHQGLARVYYLKNELKAAYDEMTKLL 807 (855)
Q Consensus 766 ~A~~~~~kAL~~~----~~~a~~~lg~~~~~~g~~~~A~~~~~kal 807 (855)
.+.+.|+...... .+..|-..|..+...|++++|.+.|+++|
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 7888887777655 67778888999999999999999998775
No 473
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.36 E-value=3e+02 Score=31.13 Aligned_cols=154 Identities=15% Similarity=0.059 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh----HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCC--CCCHH
Q 003035 675 ERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSD--GLRKG 748 (855)
Q Consensus 675 ~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~----~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~--~~~p~ 748 (855)
.++.-+|.-|..-|+.+.|++.|-++-..-.+. ..+.+.-.+-...|+|..-..+ ..+|...+.. ...+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy----~~~A~st~~~~~~~~q~ 226 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSY----ISKAESTPDANENLAQE 226 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhH----HHHHHhCchhhhhHHHh
Confidence 356778999999999999999999976666666 4455566666778999999998 8888855411 11111
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc----------cHHHHHHHHHHH-HHcCCHH---HHHHHHHHHHHHcc
Q 003035 749 ---QALNNLGSIYVECGKLDQAENCYINALDIK----------HTRAHQGLARVY-YLKNELK---AAYDEMTKLLEKAQ 811 (855)
Q Consensus 749 ---~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~----------~~~a~~~lg~~~-~~~g~~~---~A~~~~~kal~~~p 811 (855)
.+.-.-|......++|..|.++|-.+..-. +..+|.++.-+- +...++. -.-..|+.-+++.|
T Consensus 227 v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~P 306 (466)
T KOG0686|consen 227 VPAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEP 306 (466)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcCh
Confidence 444455666677779999999887765433 233444433211 1111222 11234555555554
Q ss_pred CCHHHHHHHhh--cCCHHHHHHHHHH
Q 003035 812 YSASAFEKRSE--YSDREMAKNDLNM 835 (855)
Q Consensus 812 ~~~~a~~~lg~--~g~~eeA~~~~~k 835 (855)
..+..++. .++|..-.+.+++
T Consensus 307 ---qlr~il~~fy~sky~~cl~~L~~ 329 (466)
T KOG0686|consen 307 ---QLREILFKFYSSKYASCLELLRE 329 (466)
T ss_pred ---HHHHHHHHHhhhhHHHHHHHHHH
Confidence 45555666 6677766666654
No 474
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=35.25 E-value=8.8e+02 Score=29.32 Aligned_cols=118 Identities=16% Similarity=0.141 Sum_probs=57.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCC-------CCCHHH
Q 003035 677 LVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSD-------GLRKGQ 749 (855)
Q Consensus 677 ~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~-------~~~p~~ 749 (855)
....|.-....|++++|+..|.-+ |+++.+++.+-+++-+++..+.. .-++..
T Consensus 417 ~~~~A~~~e~~g~~~dAi~Ly~La--------------------~~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~ 476 (613)
T PF04097_consen 417 IEQAAREAEERGRFEDAILLYHLA--------------------EEYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIE 476 (613)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHT--------------------T-HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH--------------------hhHHHHHHHHHHHHHHHHcCccccccccchhhhHHH
Confidence 345667777888888888877554 45566666644445555533332 111112
Q ss_pred HHHHHHHHHHHcCCH-----HHHHHHHHHHHhcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh
Q 003035 750 ALNNLGSIYVECGKL-----DQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE 822 (855)
Q Consensus 750 a~~~LG~~y~~~g~~-----~~A~~~~~kAL~~~~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~ 822 (855)
.-..+...|...+.. ....+.+...+.+ .-..-++..|++++|++.+++ +.+-|.++......+.
T Consensus 477 la~~i~~~y~~~~~~~~~~~~~~~~t~~~Ll~L-------~~ff~~~~~g~~~~AL~~i~~-L~liP~~~~~V~~~a~ 546 (613)
T PF04097_consen 477 LAKEILERYKSNPHISSKVSRKNRETFQLLLDL-------AEFFDLYHAGQYEQALDIIEK-LDLIPLDPSEVRRCAE 546 (613)
T ss_dssp HHHHHHHHHTTSHHHHTTS-HHHHHHHHHHHHH-------HHHHHHHHTT-HHHHHHHHHH-TT-S-S-HHHHHHHHH
T ss_pred HHHHHHHHHHhCcchHhhccHHHHHHHHHHHHH-------HHHHHHHHcCCHHHHHHHHHh-CCCCCCCHHHHHHHHH
Confidence 222333333332221 2223333333222 123345667888888888765 4466777666555555
No 475
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=35.23 E-value=63 Score=22.01 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=21.0
Q ss_pred HHHHhhhhHhh----hhcHHHHHHHHHHHHHhc
Q 003035 421 ALHQLGCVMFE----REEYKDACYYFEAAADAG 449 (855)
Q Consensus 421 a~~~LG~~~l~----~g~~~eA~~~~~~Al~~~ 449 (855)
+.+.||..|+. ..+..+|..+|++|.+.+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g 35 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAELG 35 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHcc
Confidence 45667777764 348899999999987643
No 476
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=34.49 E-value=71 Score=26.18 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=17.2
Q ss_pred HhhhhHhhhhcHHHHHHHHHHHHH
Q 003035 424 QLGCVMFEREEYKDACYYFEAAAD 447 (855)
Q Consensus 424 ~LG~~~l~~g~~~eA~~~~~~Al~ 447 (855)
..|.-.-+.|+|++|+.+|.+|++
T Consensus 10 ~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 10 KKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334444456899999999988875
No 477
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=33.99 E-value=68 Score=27.21 Aligned_cols=19 Identities=26% Similarity=0.586 Sum_probs=15.5
Q ss_pred HhhhhcHHHHHHHHHHHHH
Q 003035 429 MFEREEYKDACYYFEAAAD 447 (855)
Q Consensus 429 ~l~~g~~~eA~~~~~~Al~ 447 (855)
.-+.|+|++|+.+|..|++
T Consensus 16 ~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 16 RDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 3456899999999999885
No 478
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.81 E-value=6.9e+02 Score=27.66 Aligned_cols=43 Identities=9% Similarity=0.038 Sum_probs=33.8
Q ss_pred HHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHh
Q 003035 406 ERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADA 448 (855)
Q Consensus 406 e~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~ 448 (855)
+-+.+.+|+..+.......+|.-|+..++++.|.-.|++|...
T Consensus 112 DNi~~Y~g~~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~r 154 (449)
T COG3014 112 DNVRAYGGNIYEGVLINYYKALNYMLLNDSAKARVEFNRANER 154 (449)
T ss_pred cchhhcCchhHHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHH
Confidence 3345566777777777788899999999999999999988754
No 479
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=33.61 E-value=97 Score=29.68 Aligned_cols=44 Identities=18% Similarity=0.057 Sum_probs=19.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHC
Q 003035 677 LVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADT 720 (855)
Q Consensus 677 ~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~ 720 (855)
....+.-.+..|++.-|....+.++..+|++ .+...++.+|...
T Consensus 73 vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~l 117 (141)
T PF14863_consen 73 VLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQL 117 (141)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 3334444444455555555555555555554 4444444444443
No 480
>KOG3342 consensus Signal peptidase I [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.01 E-value=23 Score=33.81 Aligned_cols=20 Identities=30% Similarity=0.288 Sum_probs=16.2
Q ss_pred CCc-EEEEEcCeEEEe-eehhh
Q 003035 217 DDS-VTFCVRDKEISF-VRNKI 236 (855)
Q Consensus 217 ~~~-V~f~v~~~~~~a-Hr~vL 236 (855)
..+ |+|.|+|++||+ ||+|=
T Consensus 80 vGdivVf~vegR~IPiVHRviK 101 (180)
T KOG3342|consen 80 VGDIVVFKVEGREIPIVHRVIK 101 (180)
T ss_pred eccEEEEEECCccCchhHHHHH
Confidence 345 999999999995 88763
No 481
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=32.58 E-value=1.4e+02 Score=34.87 Aligned_cols=66 Identities=14% Similarity=0.115 Sum_probs=43.2
Q ss_pred CChHHHHHHHHhHHHcCCCchHHHHHHhhccCcchHHHHHHHHHHh-----CCCCchhHHHHHHHHHHhCCHHHHHHHHH
Q 003035 465 GQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASEL-----DPTLSFPYKYRAVAKMEEGQIRAAISEID 539 (855)
Q Consensus 465 g~~~~A~~~l~~~i~~~p~~~~~y~~~~~~~~~~~A~~~l~~a~~l-----dP~~~~a~~~~a~~~~~~~~~~~A~~~~~ 539 (855)
.++.-|+..+..+-+..|..+ ...+++.|.+|+.. +-.+.++|.++|..+...+++.+|+....
T Consensus 274 ~~YPmALg~LadLeEi~pt~~-----------r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa 342 (618)
T PF05053_consen 274 ARYPMALGNLADLEEIDPTPG-----------RPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWA 342 (618)
T ss_dssp TT-HHHHHHHHHHHHHS--TT-----------S--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hhCchhhhhhHhHHhhccCCC-----------CCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHH
Confidence 356678877777777777543 23455556666543 45678899999999999999999998776
Q ss_pred HH
Q 003035 540 RI 541 (855)
Q Consensus 540 k~ 541 (855)
++
T Consensus 343 ~a 344 (618)
T PF05053_consen 343 EA 344 (618)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 482
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=32.42 E-value=6.3e+02 Score=27.25 Aligned_cols=123 Identities=16% Similarity=0.086 Sum_probs=83.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCc----------HHHH---HHHH-HHHHHCCCHHHHHHHHHHHHhccCCh--HH
Q 003035 646 QSLLLLRLNCQKAAMRCLRLARNHSSSE----------HERL---VYEG-WILYDTGHREEALSRAEKSISIERTF--EA 709 (855)
Q Consensus 646 ~a~~l~~~g~~~~A~~~l~~al~~~p~~----------~~~~---~~lg-~~~~~~g~~~eAl~~~~kal~~~p~~--~a 709 (855)
.+..++-..++..|+...+++++.-.++ .+.- .-.| +++..+|++.+.+...-+-.+...+. .+
T Consensus 41 Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkI 120 (309)
T PF07163_consen 41 AADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKI 120 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHH
Confidence 4556666778999999999988753111 1221 2223 56778999999888776666554444 44
Q ss_pred HHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHH
Q 003035 710 FFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG---QALNNLGSIYVECGKLDQAENCYI 772 (855)
Q Consensus 710 ~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~---~a~~~LG~~y~~~g~~~~A~~~~~ 772 (855)
.-.--..|.+.+.+....+. -..-+.++++..-|+ -+-..+-.++.=.|.+++|.+...
T Consensus 121 leLCILLysKv~Ep~amlev----~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 121 LELCILLYSKVQEPAAMLEV----ASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELVV 182 (309)
T ss_pred HHHHHHHHHHhcCHHHHHHH----HHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 44444567788888888888 788887777776666 333445566666899999988874
No 483
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.27 E-value=1.5e+02 Score=34.89 Aligned_cols=28 Identities=29% Similarity=0.555 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003035 749 QALNNLGSIYVECGKLDQAENCYINALD 776 (855)
Q Consensus 749 ~a~~~LG~~y~~~g~~~~A~~~~~kAL~ 776 (855)
.=|-.||......|++..|.+|+.+|-.
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 4455666666666666666666666544
No 484
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=32.03 E-value=1.1e+02 Score=25.05 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=15.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q 003035 753 NLGSIYVECGKLDQAENCYINALD 776 (855)
Q Consensus 753 ~LG~~y~~~g~~~~A~~~~~kAL~ 776 (855)
..|.-.-..|++++|+++|.++++
T Consensus 10 ~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 10 KKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334445566777777777766655
No 485
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=31.78 E-value=67 Score=20.85 Aligned_cols=26 Identities=23% Similarity=0.347 Sum_probs=15.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003035 751 LNNLGSIYVECGKLDQAENCYINALD 776 (855)
Q Consensus 751 ~~~LG~~y~~~g~~~~A~~~~~kAL~ 776 (855)
|+.+=..|.+.|++++|.+.|++-.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 45555666666666666666665443
No 486
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=31.74 E-value=4.6e+02 Score=29.57 Aligned_cols=132 Identities=17% Similarity=0.050 Sum_probs=0.0
Q ss_pred cCCCChHHHHHHHH--HHHHcCCHHHHHHHHHHHHhcCCCcHH-------HHHHHHHHHHHCCCHHHHHHHHHHHHhccC
Q 003035 635 NDPGKSFLRFRQSL--LLLRLNCQKAAMRCLRLARNHSSSEHE-------RLVYEGWILYDTGHREEALSRAEKSISIER 705 (855)
Q Consensus 635 ~~p~~~~~~~~~a~--~l~~~g~~~~A~~~l~~al~~~p~~~~-------~~~~lg~~~~~~g~~~eAl~~~~kal~~~p 705 (855)
.+|.+......... .+++.++|..|.+.|+.+++..++... .....|..+.+.-++++|...+++ -..+
T Consensus 123 ~nP~~v~~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~--~~~~ 200 (380)
T TIGR02710 123 SDPYNVEGNTEQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND--PLPE 200 (380)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh--ccch
Q ss_pred Ch-HHHHHHHHHHHHCCCCchhHHHHHHHHHHH-----hcCCCCCCCHHHHHHHHHHHHH------HcCCHHHHHHHHHH
Q 003035 706 TF-EAFFLKAYILADTNLDPESSTYVIQLLEEA-----LRCPSDGLRKGQALNNLGSIYV------ECGKLDQAENCYIN 773 (855)
Q Consensus 706 ~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~a-----l~~~~~~~~p~~a~~~LG~~y~------~~g~~~~A~~~~~k 773 (855)
.. ..+...-.-+...-+-...+.- ..+. . ...+...+..+++++. ..|+|+.|+..+-+
T Consensus 201 ~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~-----~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR 271 (380)
T TIGR02710 201 RLALYQVTSHDELEDVIKRNASILP----EIIGSRNGRR-----EAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYR 271 (380)
T ss_pred hhhhhhhhhhhHHHHHHHhHHhhcc----hhhhccchhh-----hhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q ss_pred HHhc
Q 003035 774 ALDI 777 (855)
Q Consensus 774 AL~~ 777 (855)
++++
T Consensus 272 ~~e~ 275 (380)
T TIGR02710 272 ALEL 275 (380)
T ss_pred HHHH
No 487
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=30.92 E-value=1.1e+02 Score=30.59 Aligned_cols=50 Identities=16% Similarity=0.035 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Q 003035 531 IRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESN 580 (855)
Q Consensus 531 ~~~A~~~~~k~l~~~p~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~ 580 (855)
.+..++..++.+...|++..+...+.++...|+.++|....+++..+.|.
T Consensus 127 l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 34455666788888999999998899999999999999999999999984
No 488
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=30.73 E-value=1.2e+03 Score=29.40 Aligned_cols=44 Identities=16% Similarity=0.155 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc---cHHHHHHHHHHHHH
Q 003035 749 QALNNLGSIYVECGKLDQAENCYINALDIK---HTRAHQGLARVYYL 792 (855)
Q Consensus 749 ~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~---~~~a~~~lg~~~~~ 792 (855)
.+|..+-..+...+++++|...|..+++.+ +-..+.++...+..
T Consensus 1019 ~aYdlL~~~~v~~~d~e~Ak~lla~liak~~kls~~fL~rl~qlL~~ 1065 (1088)
T KOG4318|consen 1019 KAYDLLSEYGVELRDYEEAKNLLAALIAKHSKLSKKFLFRLNQLLNI 1065 (1088)
T ss_pred HHHHHHHHHHhhcCchHHHHHHHHHHHhhcchhhHHHHHhHHHHHHh
Confidence 388888888888888888888888888766 44555555544433
No 489
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.48 E-value=4.6e+02 Score=31.20 Aligned_cols=21 Identities=10% Similarity=-0.108 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHCCCCchhHHH
Q 003035 709 AFFLKAYILADTNLDPESSTY 729 (855)
Q Consensus 709 a~~~lg~~~~~~g~~~~A~~~ 729 (855)
=|-.||.+....+++..|.+.
T Consensus 668 Kw~~Lg~~al~~~~l~lA~EC 688 (794)
T KOG0276|consen 668 KWRQLGDAALSAGELPLASEC 688 (794)
T ss_pred HHHHHHHHHhhcccchhHHHH
Confidence 344455555555555555555
No 490
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.23 E-value=4.1e+02 Score=29.08 Aligned_cols=60 Identities=18% Similarity=0.137 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc----cHHH----HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003035 749 QALNNLGSIYVECGKLDQAENCYINALDIK----HTRA----HQGLARVYYLKNELKAAYDEMTKLLE 808 (855)
Q Consensus 749 ~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~----~~~a----~~~lg~~~~~~g~~~~A~~~~~kal~ 808 (855)
..+..+|.+|.+.++..+|..+..++-=+- |... -...|+++..++++-+|-.-|.+...
T Consensus 145 ~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 145 LLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677789999999999999999888874322 3332 23457777778877777666655543
No 491
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=29.92 E-value=1.1e+03 Score=28.59 Aligned_cols=113 Identities=14% Similarity=0.088 Sum_probs=70.6
Q ss_pred HHHHHHcCCHHHHHHH----------HHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCChHHHHHHHHH
Q 003035 647 SLLLLRLNCQKAAMRC----------LRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYI 716 (855)
Q Consensus 647 a~~l~~~g~~~~A~~~----------l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~~a~~~lg~~ 716 (855)
|.+++..|+..+|+.. ++-+.+++-.+-+.+...+..+-....+.-|-+.|++.=.. -.+...
T Consensus 710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~-------ksiVql 782 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL-------KSLVQL 782 (1081)
T ss_pred HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH-------HHHhhh
Confidence 3445555555555543 33344555666666666777777777777777777664221 223455
Q ss_pred HHHCCCCchhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003035 717 LADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALD 776 (855)
Q Consensus 717 ~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~~a~~~LG~~y~~~g~~~~A~~~~~kAL~ 776 (855)
+.+.+++++|... -++-- +.-| +.|...|..+.+..++++|.+.|-+|=+
T Consensus 783 Hve~~~W~eAFal----Ae~hP-----e~~~-dVy~pyaqwLAE~DrFeEAqkAfhkAGr 832 (1081)
T KOG1538|consen 783 HVETQRWDEAFAL----AEKHP-----EFKD-DVYMPYAQWLAENDRFEEAQKAFHKAGR 832 (1081)
T ss_pred eeecccchHhHhh----hhhCc-----cccc-cccchHHHHhhhhhhHHHHHHHHHHhcc
Confidence 6778899998877 33332 2111 6777778888888888888888877643
No 492
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=29.66 E-value=9.2e+02 Score=27.81 Aligned_cols=84 Identities=19% Similarity=0.181 Sum_probs=62.0
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH-HHHHCCCHHHHHHHHHHHHhccCChHHHHH-HHHHHHHCCCCchhHH
Q 003035 651 LRLNCQKAAMRCLRLARNHSSSEHERLVYEGW-ILYDTGHREEALSRAEKSISIERTFEAFFL-KAYILADTNLDPESST 728 (855)
Q Consensus 651 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~-~~~~~g~~~eAl~~~~kal~~~p~~~a~~~-lg~~~~~~g~~~~A~~ 728 (855)
.+..-.+.|.+.|-++.+..--.++++..-|. -++.+|++.-|-..|+-.+..+|+..+|.. .-..+...++...|..
T Consensus 408 ~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~nara 487 (660)
T COG5107 408 LRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARA 487 (660)
T ss_pred HHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHH
Confidence 34455788889998887765455666655554 456789999999999999999999844443 3345566788888888
Q ss_pred HHHHHHHHHh
Q 003035 729 YVIQLLEEAL 738 (855)
Q Consensus 729 ~~~~lle~al 738 (855)
. |++++
T Consensus 488 L----Fetsv 493 (660)
T COG5107 488 L----FETSV 493 (660)
T ss_pred H----HHHhH
Confidence 8 99888
No 493
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=29.31 E-value=7.7e+02 Score=29.81 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=13.1
Q ss_pred HHHhhhhHhhhhcHHHHHHHHHH
Q 003035 422 LHQLGCVMFEREEYKDACYYFEA 444 (855)
Q Consensus 422 ~~~LG~~~l~~g~~~eA~~~~~~ 444 (855)
....|.-.-.+|++.+|+..|.-
T Consensus 417 ~~~~A~~~e~~g~~~dAi~Ly~L 439 (613)
T PF04097_consen 417 IEQAAREAEERGRFEDAILLYHL 439 (613)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH
Confidence 34455556666777777666543
No 494
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=28.93 E-value=2e+02 Score=26.85 Aligned_cols=54 Identities=15% Similarity=0.108 Sum_probs=39.9
Q ss_pred HHHhhhhHhhhhcHHHHHHHHHHHHHhc------c-----------hhhhhhHHHHHHHhCChHHHHHHHH
Q 003035 422 LHQLGCVMFEREEYKDACYYFEAAADAG------H-----------IYSLAGLARAKYKVGQQYSAYKLIN 475 (855)
Q Consensus 422 ~~~LG~~~l~~g~~~eA~~~~~~Al~~~------~-----------~~a~~~la~~~~~~g~~~~A~~~l~ 475 (855)
+..+|+..++.+++-.|+-+|++|+... + +-+..+||.++..+|+.+-.++.++
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLq 74 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQ 74 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHH
Confidence 4568888899999999999999998541 0 1234678888888888777666553
No 495
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.89 E-value=1.9e+02 Score=25.91 Aligned_cols=44 Identities=14% Similarity=-0.013 Sum_probs=35.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh
Q 003035 779 HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE 822 (855)
Q Consensus 779 ~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~ 822 (855)
.+-.|-.||.+|...|+.+.|...|+.--.+.|........|-.
T Consensus 71 pPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fmDFLmk 114 (121)
T COG4259 71 PPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFMDFLMK 114 (121)
T ss_pred CCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHHHHHHH
Confidence 55677788999999999999999998888888888777666544
No 496
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=28.37 E-value=1.1e+02 Score=20.17 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=15.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003035 751 LNNLGSIYVECGKLDQAENCYINALD 776 (855)
Q Consensus 751 ~~~LG~~y~~~g~~~~A~~~~~kAL~ 776 (855)
|+.+=..|.+.|++++|.+.|.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44455556666666666666665543
No 497
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=28.33 E-value=2.1e+02 Score=29.86 Aligned_cols=90 Identities=19% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHCCCHHHHHHHHHHHHhcc-----------CCh--HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--
Q 003035 684 LYDTGHREEALSRAEKSISIE-----------RTF--EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG-- 748 (855)
Q Consensus 684 ~~~~g~~~eAl~~~~kal~~~-----------p~~--~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~-- 748 (855)
+++.|+++.|+...+-+|+.+ |.+ +-...-+......|+.-+.. . ++.......+.--|+
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~-~----~~~~~~l~~~~dmpd~v 167 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPY-F----LRVFLDLTTEWDMPDEV 167 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChH-H----HHHHHHHHhcCCCChHH
Q ss_pred --HHHHHHHHHH---------HHcCCHHHHHHHHHHHHhcc
Q 003035 749 --QALNNLGSIY---------VECGKLDQAENCYINALDIK 778 (855)
Q Consensus 749 --~a~~~LG~~y---------~~~g~~~~A~~~~~kAL~~~ 778 (855)
..|-..|..+ .+.++...|+.++++|++++
T Consensus 168 rAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~ 208 (230)
T PHA02537 168 RAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLN 208 (230)
T ss_pred HHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhC
No 498
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=28.31 E-value=2.5e+02 Score=32.97 Aligned_cols=42 Identities=17% Similarity=0.194 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHh-------cchhhhhhHHHHHHHhCChHHHHHHHHhH
Q 003035 436 KDACYYFEAAADA-------GHIYSLAGLARAKYKVGQQYSAYKLINSI 477 (855)
Q Consensus 436 ~eA~~~~~~Al~~-------~~~~a~~~la~~~~~~g~~~~A~~~l~~~ 477 (855)
..++..|++||.. .|.+.+..+|..++..+++.+|+....++
T Consensus 296 ~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~a 344 (618)
T PF05053_consen 296 PTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEA 344 (618)
T ss_dssp --HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHH
Confidence 4456667777653 46777888888888889888888765544
No 499
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=28.18 E-value=5.3e+02 Score=33.24 Aligned_cols=166 Identities=19% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHH---HHHHCCCHHHHHHHHHHHHhccCCh--HHHHHHHHHHHHCCCCchhHHHHHHHH
Q 003035 660 MRCLRLARNHSSSEHERLVYEGW---ILYDTGHREEALSRAEKSISIERTF--EAFFLKAYILADTNLDPESSTYVIQLL 734 (855)
Q Consensus 660 ~~~l~~al~~~p~~~~~~~~lg~---~~~~~g~~~eAl~~~~kal~~~p~~--~a~~~lg~~~~~~g~~~~A~~~~~~ll 734 (855)
.....+.-+.||.+.-.+.+.-. ..++.=+.+.=++-|++|+.--... ..+-..=..-.+.|.|++|+.. |
T Consensus 856 al~VAq~SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~l----y 931 (1265)
T KOG1920|consen 856 ALLVAQKSQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALAL----Y 931 (1265)
T ss_pred HHHHHHHhccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhhe----e
Q ss_pred HHHhcCCCCCCCHH--HHHHHH----------HHHHHHcCCHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHcCCHHHH
Q 003035 735 EEALRCPSDGLRKG--QALNNL----------GSIYVECGKLDQAENCYINALDIK---HTRAHQGLARVYYLKNELKAA 799 (855)
Q Consensus 735 e~al~~~~~~~~p~--~a~~~L----------G~~y~~~g~~~~A~~~~~kAL~~~---~~~a~~~lg~~~~~~g~~~~A 799 (855)
.--. +.+.. .+|... |..|...|+.++|+++|+.+.... ...+....+.-... .-|
T Consensus 932 ~~~~-----e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~----~~a 1002 (1265)
T KOG1920|consen 932 KPDS-----EKQKVIYEAYADHLREELMSDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELV----ILA 1002 (1265)
T ss_pred ccCH-----HHHHHHHHHHHHHHHHhccccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHH----HHH
Q ss_pred HHHHHHHHHHccCCHHHHHHHhhcCCHHHHHHHHHHHHh
Q 003035 800 YDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQ 838 (855)
Q Consensus 800 ~~~~~kal~~~p~~~~a~~~lg~~g~~eeA~~~~~kAl~ 838 (855)
+++..+..+.....--+-..+-..+++++|...|-+|-+
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~sd~~~av~ll~ka~~ 1041 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLSDPEEAVALLCKAKE 1041 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhcCHHHHHHHHhhHhH
No 500
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=28.04 E-value=95 Score=26.33 Aligned_cols=19 Identities=11% Similarity=0.349 Sum_probs=14.8
Q ss_pred HhhhhcHHHHHHHHHHHHH
Q 003035 429 MFEREEYKDACYYFEAAAD 447 (855)
Q Consensus 429 ~l~~g~~~eA~~~~~~Al~ 447 (855)
.-+.|+|++|+.+|.++|+
T Consensus 16 ~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 16 LDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 3445899999999988875
Done!