Query 003035
Match_columns 855
No_of_seqs 626 out of 4561
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 10:55:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003035.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003035hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 9.8E-36 3.4E-40 333.1 39.4 360 425-851 5-380 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 4.8E-35 1.6E-39 327.5 41.1 365 387-822 5-381 (388)
3 2xpi_A Anaphase-promoting comp 100.0 2E-34 6.7E-39 340.7 41.0 432 384-853 87-593 (597)
4 2xpi_A Anaphase-promoting comp 100.0 2E-31 6.8E-36 315.0 40.1 405 384-822 120-592 (597)
5 2gw1_A Mitochondrial precursor 100.0 3.3E-31 1.1E-35 305.9 33.7 402 382-822 7-491 (514)
6 3fp2_A TPR repeat-containing p 100.0 7.6E-31 2.6E-35 305.2 34.6 433 381-846 25-498 (537)
7 2gw1_A Mitochondrial precursor 100.0 1.2E-30 4E-35 301.3 34.0 382 372-788 31-491 (514)
8 3fp2_A TPR repeat-containing p 100.0 1E-29 3.5E-34 295.7 39.1 409 372-821 50-503 (537)
9 2y4t_A DNAJ homolog subfamily 100.0 3.6E-29 1.2E-33 284.6 37.5 346 399-844 9-415 (450)
10 3ieg_A DNAJ homolog subfamily 100.0 1.3E-27 4.6E-32 261.2 38.9 309 420-822 4-348 (359)
11 3ieg_A DNAJ homolog subfamily 100.0 1.4E-27 4.8E-32 261.1 37.6 313 452-849 4-345 (359)
12 4g1t_A Interferon-induced prot 100.0 5.8E-29 2E-33 285.2 26.4 373 418-851 50-471 (472)
13 2y4t_A DNAJ homolog subfamily 100.0 7.7E-28 2.6E-32 273.6 34.5 299 498-851 43-370 (450)
14 4g1t_A Interferon-induced prot 100.0 2.5E-28 8.6E-33 279.9 28.6 382 383-822 53-472 (472)
15 3hym_B Cell division cycle pro 100.0 1.9E-26 6.3E-31 249.7 30.8 290 506-822 13-312 (330)
16 2xm6_A Protein corresponding t 99.9 1.1E-24 3.8E-29 252.3 43.3 383 384-841 42-469 (490)
17 2xm6_A Protein corresponding t 99.9 2.1E-24 7.2E-29 250.0 42.5 366 400-842 25-435 (490)
18 3hym_B Cell division cycle pro 99.9 2.4E-25 8.1E-30 240.9 30.2 283 450-797 21-322 (330)
19 1fch_A Peroxisomal targeting s 99.9 3.6E-26 1.2E-30 252.3 23.2 274 498-839 42-359 (368)
20 3hve_A Gigaxonin; ubiquitin, c 99.9 1.3E-26 4.6E-31 245.4 15.6 188 210-406 24-221 (256)
21 3htm_A Speckle-type POZ protei 99.9 1.2E-26 4E-31 230.5 14.1 146 210-359 27-172 (172)
22 1fch_A Peroxisomal targeting s 99.9 3.3E-25 1.1E-29 244.5 24.8 301 428-810 34-360 (368)
23 4eqf_A PEX5-related protein; a 99.9 6E-25 2E-29 243.1 21.8 270 502-838 48-355 (365)
24 3i3n_A Kelch-like protein 11; 99.9 2.7E-26 9.3E-31 246.2 10.5 176 211-395 26-218 (279)
25 2h6f_A Protein farnesyltransfe 99.9 6.9E-25 2.4E-29 245.6 19.7 253 506-822 88-361 (382)
26 2h6f_A Protein farnesyltransfe 99.9 2.7E-24 9.2E-29 240.8 19.7 244 541-852 89-361 (382)
27 3hqi_A Speckle-type POZ protei 99.9 8.3E-25 2.8E-29 238.6 14.8 146 210-359 167-312 (312)
28 3cv0_A Peroxisome targeting si 99.9 1.1E-23 3.7E-28 227.6 21.8 262 515-843 21-319 (327)
29 4eqf_A PEX5-related protein; a 99.9 2.2E-23 7.5E-28 230.5 24.6 268 453-807 67-354 (365)
30 2pl2_A Hypothetical conserved 99.9 1.4E-23 4.8E-28 216.1 20.8 192 637-837 2-212 (217)
31 2ooe_A Cleavage stimulation fa 99.9 8.4E-22 2.9E-26 230.4 38.5 405 405-842 2-495 (530)
32 3u4t_A TPR repeat-containing p 99.9 1.6E-22 5.5E-27 213.2 25.1 243 516-822 4-263 (272)
33 3cv0_A Peroxisome targeting si 99.9 1.5E-22 5.1E-27 218.6 24.8 276 453-812 23-318 (327)
34 3e4b_A ALGK; tetratricopeptide 99.9 3.4E-22 1.2E-26 229.3 26.5 340 423-840 7-388 (452)
35 4eoz_A Speckle-type POZ protei 99.9 4.3E-24 1.5E-28 205.7 6.0 128 210-341 18-145 (145)
36 3uq3_A Heat shock protein STI1 99.9 1.3E-21 4.3E-26 203.7 23.3 240 515-822 5-255 (258)
37 3mkr_A Coatomer subunit epsilo 99.9 1.6E-21 5.6E-26 210.3 23.1 193 627-833 86-288 (291)
38 3mkr_A Coatomer subunit epsilo 99.9 2.7E-21 9.3E-26 208.6 24.5 255 522-851 6-276 (291)
39 3u4t_A TPR repeat-containing p 99.9 6.6E-21 2.3E-25 200.8 26.4 234 499-794 21-269 (272)
40 2pl2_A Hypothetical conserved 99.9 2E-21 6.7E-26 199.9 20.6 195 512-774 2-211 (217)
41 2ooe_A Cleavage stimulation fa 99.9 7.9E-20 2.7E-24 213.7 36.2 379 442-844 2-459 (530)
42 3e4b_A ALGK; tetratricopeptide 99.9 2.1E-20 7.1E-25 214.5 30.0 186 385-581 7-212 (452)
43 3uq3_A Heat shock protein STI1 99.9 1.4E-20 4.9E-25 195.6 25.2 226 548-848 5-251 (258)
44 3sf4_A G-protein-signaling mod 99.9 1.5E-20 5E-25 209.4 24.2 274 514-843 8-340 (406)
45 2vkp_A BTB/POZ domain-containi 99.9 8.7E-22 3E-26 179.8 11.1 102 213-318 4-109 (109)
46 4a1s_A PINS, partner of inscut 99.9 5.9E-21 2E-25 214.2 20.2 268 515-843 48-376 (411)
47 3sf4_A G-protein-signaling mod 99.9 5.5E-21 1.9E-25 212.9 19.6 250 517-822 49-355 (406)
48 3vtx_A MAMA; tetratricopeptide 99.9 1.4E-20 4.9E-25 186.9 20.2 169 638-815 3-176 (184)
49 2q7f_A YRRB protein; TPR, prot 99.9 5.7E-21 1.9E-25 197.3 17.6 207 639-854 22-237 (243)
50 2vq2_A PILW, putative fimbrial 99.9 7E-20 2.4E-24 186.2 25.0 209 635-850 3-222 (225)
51 2ho1_A Type 4 fimbrial biogene 99.9 3.1E-20 1E-24 193.6 22.6 211 634-851 30-250 (252)
52 3ro2_A PINS homolog, G-protein 99.9 2.6E-20 8.9E-25 200.6 22.8 271 517-843 7-336 (338)
53 1ouv_A Conserved hypothetical 99.9 2.4E-19 8.4E-24 190.0 29.4 234 511-817 2-259 (273)
54 4a1s_A PINS, partner of inscut 99.8 2.7E-20 9.3E-25 208.7 22.1 279 453-813 50-376 (411)
55 2if5_A Zinc finger and BTB dom 99.8 2E-21 6.9E-26 180.7 10.5 102 210-314 18-119 (120)
56 3vtx_A MAMA; tetratricopeptide 99.8 3.1E-20 1.1E-24 184.4 18.0 164 672-844 3-175 (184)
57 1ouv_A Conserved hypothetical 99.8 4.7E-19 1.6E-23 187.8 28.2 225 547-846 5-258 (273)
58 3ro2_A PINS homolog, G-protein 99.8 6.4E-20 2.2E-24 197.4 20.2 279 453-813 7-336 (338)
59 2z8h_A Transcription regulator 99.8 4.7E-21 1.6E-25 182.8 7.2 108 210-323 29-137 (138)
60 2ppi_A Gigaxonin; BTB domain, 99.8 8E-21 2.7E-25 182.3 8.8 103 210-315 40-144 (144)
61 2q7f_A YRRB protein; TPR, prot 99.8 2.4E-19 8.2E-24 185.0 20.5 177 637-822 54-235 (243)
62 1r29_A B-cell lymphoma 6 prote 99.8 1.7E-20 5.8E-25 176.2 10.8 104 210-316 22-125 (127)
63 1xnf_A Lipoprotein NLPI; TPR, 99.8 1.7E-19 5.7E-24 189.9 18.9 241 525-833 15-269 (275)
64 3b84_A Zinc finger and BTB dom 99.8 8.4E-21 2.9E-25 176.2 7.4 100 211-317 18-117 (119)
65 1buo_A POZ domain, protein (pr 99.8 3.2E-20 1.1E-24 172.8 10.3 101 210-318 21-121 (121)
66 4abn_A Tetratricopeptide repea 99.8 1.7E-19 5.9E-24 208.1 18.1 200 626-834 88-316 (474)
67 2vpk_A Myoneurin; transcriptio 99.8 3.3E-20 1.1E-24 171.4 9.2 101 211-316 16-116 (116)
68 4gyw_A UDP-N-acetylglucosamine 99.8 1.6E-19 5.5E-24 217.5 17.2 171 635-814 4-179 (723)
69 2ho1_A Type 4 fimbrial biogene 99.8 5E-18 1.7E-22 176.7 26.3 206 548-820 37-249 (252)
70 4gyw_A UDP-N-acetylglucosamine 99.8 1.4E-19 4.9E-24 217.9 16.4 166 669-843 4-178 (723)
71 2yy9_A Zinc finger and BTB dom 99.8 1.9E-20 6.5E-25 177.8 6.8 103 210-319 18-120 (135)
72 4i17_A Hypothetical protein; T 99.8 1.8E-18 6E-23 178.2 21.7 201 637-851 4-221 (228)
73 2ond_A Cleavage stimulation fa 99.8 3.4E-18 1.2E-22 185.4 21.7 250 498-822 33-305 (308)
74 2vq2_A PILW, putative fimbrial 99.8 2.9E-17 9.9E-22 166.8 26.9 207 548-821 8-223 (225)
75 3ulq_A Response regulator aspa 99.8 4.2E-18 1.5E-22 190.0 22.4 241 517-812 105-371 (383)
76 2q81_A MIZ-1 protein; BTB/POZ 99.8 7.6E-20 2.6E-24 169.7 6.3 97 211-315 21-117 (119)
77 1xnf_A Lipoprotein NLPI; TPR, 99.8 1.4E-18 4.8E-23 182.8 16.9 213 625-847 24-252 (275)
78 4abn_A Tetratricopeptide repea 99.8 6.9E-19 2.4E-23 203.0 15.8 190 654-852 82-300 (474)
79 2ond_A Cleavage stimulation fa 99.8 1.3E-17 4.4E-22 180.8 24.3 211 625-844 35-275 (308)
80 3ulq_A Response regulator aspa 99.8 3.7E-18 1.3E-22 190.5 20.5 234 551-841 106-370 (383)
81 3ohu_A Transcription regulator 99.8 1.8E-20 6.3E-25 175.5 1.1 100 210-314 25-125 (125)
82 2ihc_A Transcription regulator 99.8 1.7E-20 5.7E-25 175.5 0.8 101 210-315 22-123 (124)
83 4i17_A Hypothetical protein; T 99.8 2.2E-18 7.5E-23 177.4 16.1 162 671-843 4-181 (228)
84 3qky_A Outer membrane assembly 99.8 7.1E-18 2.4E-22 177.7 19.1 198 634-840 9-255 (261)
85 1xi4_A Clathrin heavy chain; a 99.8 1E-15 3.4E-20 187.7 40.2 183 638-847 1103-1317(1630)
86 3ga1_A Nucleus accumbens-assoc 99.8 7.4E-20 2.5E-24 172.3 3.3 101 211-318 27-128 (129)
87 1xi4_A Clathrin heavy chain; a 99.8 7.5E-15 2.6E-19 180.1 46.3 379 386-837 990-1426(1630)
88 3nf1_A KLC 1, kinesin light ch 99.8 1.2E-17 4.1E-22 178.6 17.8 204 635-842 22-310 (311)
89 3m5b_A Zinc finger and BTB dom 99.7 8.4E-19 2.9E-23 162.3 6.4 91 214-316 27-117 (119)
90 3nf1_A KLC 1, kinesin light ch 99.7 6.8E-18 2.3E-22 180.5 14.4 248 511-812 23-310 (311)
91 3urz_A Uncharacterized protein 99.7 1.1E-17 3.8E-22 170.6 15.0 174 639-822 3-198 (208)
92 2pzi_A Probable serine/threoni 99.7 6.5E-18 2.2E-22 203.6 15.3 176 634-822 388-576 (681)
93 3qky_A Outer membrane assembly 99.7 3E-17 1E-21 172.9 17.5 197 508-768 8-252 (261)
94 3dra_A Protein farnesyltransfe 99.7 1.4E-16 4.6E-21 172.1 21.8 219 625-852 52-301 (306)
95 3q15_A PSP28, response regulat 99.7 4.7E-16 1.6E-20 173.2 26.8 240 517-811 103-367 (378)
96 3fkc_A Transcriptional regulat 99.7 9.3E-18 3.2E-22 154.7 9.6 92 210-308 24-115 (116)
97 1hz4_A MALT regulatory protein 99.7 6.7E-16 2.3E-20 171.1 24.5 274 517-846 16-329 (373)
98 3q15_A PSP28, response regulat 99.7 2.9E-16 9.9E-21 175.0 21.6 234 550-840 103-366 (378)
99 3as5_A MAMA; tetratricopeptide 99.7 1.5E-16 5.2E-21 155.8 17.1 167 640-815 8-179 (186)
100 1hz4_A MALT regulatory protein 99.7 4E-15 1.4E-19 164.8 29.8 309 418-812 13-352 (373)
101 1qqe_A Vesicular transport pro 99.7 7.6E-17 2.6E-21 173.5 14.7 189 646-843 43-273 (292)
102 2pzi_A Probable serine/threoni 99.7 1.3E-16 4.5E-21 192.2 18.0 196 509-775 388-596 (681)
103 3as5_A MAMA; tetratricopeptide 99.7 3E-16 1E-20 153.8 17.1 167 672-847 6-181 (186)
104 1qqe_A Vesicular transport pro 99.7 2.1E-16 7E-21 170.1 17.3 248 499-820 3-280 (292)
105 3dra_A Protein farnesyltransfe 99.7 5.1E-15 1.7E-19 159.8 27.9 179 498-738 50-248 (306)
106 3urz_A Uncharacterized protein 99.7 3.8E-16 1.3E-20 159.2 17.5 191 548-789 4-199 (208)
107 3edt_B KLC 2, kinesin light ch 99.7 6.2E-16 2.1E-20 162.4 16.3 185 652-840 13-282 (283)
108 4ga2_A E3 SUMO-protein ligase 99.7 9.2E-17 3.2E-21 155.0 7.2 139 647-794 4-148 (150)
109 4ga2_A E3 SUMO-protein ligase 99.6 1.2E-16 4.1E-21 154.2 7.7 135 679-822 2-142 (150)
110 2yhc_A BAMD, UPF0169 lipoprote 99.6 1.1E-14 3.8E-19 150.0 22.8 180 639-845 3-219 (225)
111 3dss_A Geranylgeranyl transfer 99.6 1.1E-14 3.7E-19 158.2 21.4 215 625-848 49-313 (331)
112 3edt_B KLC 2, kinesin light ch 99.6 4E-15 1.4E-19 156.1 17.4 179 628-810 30-282 (283)
113 2r5s_A Uncharacterized protein 99.6 1.9E-15 6.5E-20 149.4 12.0 163 637-809 3-173 (176)
114 3qou_A Protein YBBN; thioredox 99.6 1.1E-14 3.6E-19 156.4 18.2 166 635-809 112-284 (287)
115 2vsy_A XCC0866; transferase, g 99.6 5.8E-15 2E-19 173.9 15.8 177 653-838 2-189 (568)
116 2yhc_A BAMD, UPF0169 lipoprote 99.6 5E-14 1.7E-18 145.1 20.8 204 516-814 5-218 (225)
117 2ifu_A Gamma-SNAP; membrane fu 99.6 1.3E-14 4.4E-19 157.1 16.9 161 680-846 42-230 (307)
118 2vsy_A XCC0866; transferase, g 99.6 1.9E-14 6.6E-19 169.5 17.2 156 687-851 2-169 (568)
119 3rjv_A Putative SEL1 repeat pr 99.6 3.6E-14 1.2E-18 145.0 17.0 182 623-822 3-208 (212)
120 4gco_A Protein STI-1; structur 99.6 8.6E-15 3E-19 136.8 11.0 118 632-758 5-125 (126)
121 4gco_A Protein STI-1; structur 99.6 1.1E-14 3.8E-19 136.1 11.3 114 667-821 6-122 (126)
122 3rjv_A Putative SEL1 repeat pr 99.6 3E-13 1E-17 138.1 22.1 171 657-842 3-200 (212)
123 3qou_A Protein YBBN; thioredox 99.5 3.9E-14 1.3E-18 151.9 15.9 160 670-838 113-283 (287)
124 1b89_A Protein (clathrin heavy 99.5 2.3E-15 7.8E-20 167.9 6.2 72 398-480 19-90 (449)
125 2ifu_A Gamma-SNAP; membrane fu 99.5 3.8E-14 1.3E-18 153.4 15.4 161 648-814 44-228 (307)
126 3q7a_A Farnesyltransferase alp 99.5 1.6E-13 5.5E-18 149.6 19.8 218 625-851 73-344 (349)
127 3dss_A Geranylgeranyl transfer 99.5 1.4E-12 4.9E-17 141.5 26.7 189 625-822 93-317 (331)
128 2r5s_A Uncharacterized protein 99.5 1.2E-14 3.9E-19 143.7 8.7 160 670-838 2-172 (176)
129 4e6h_A MRNA 3'-END-processing 99.5 1.5E-11 5E-16 146.7 36.5 427 398-844 48-575 (679)
130 2c2l_A CHIP, carboxy terminus 99.5 2.3E-14 7.8E-19 153.3 10.7 196 637-846 1-206 (281)
131 3q7a_A Farnesyltransferase alp 99.5 6.3E-12 2.2E-16 137.1 28.5 217 498-775 71-329 (349)
132 4f3v_A ESX-1 secretion system 99.5 3.1E-14 1.1E-18 150.5 9.7 189 644-842 11-240 (282)
133 3gyz_A Chaperone protein IPGC; 99.5 4.5E-14 1.5E-18 136.5 8.8 108 662-778 24-134 (151)
134 3gyz_A Chaperone protein IPGC; 99.5 7.2E-14 2.4E-18 135.0 10.2 111 629-748 25-136 (151)
135 2ast_A S-phase kinase-associat 99.5 8.2E-14 2.8E-18 135.4 10.2 116 220-339 3-149 (159)
136 2qfc_A PLCR protein; TPR, HTH, 99.5 9.1E-13 3.1E-17 141.3 19.1 170 637-810 72-267 (293)
137 1b89_A Protein (clathrin heavy 99.5 4.3E-14 1.5E-18 157.7 7.3 295 383-807 34-353 (449)
138 1dce_A Protein (RAB geranylger 99.5 4.5E-14 1.5E-18 165.9 7.7 180 655-843 44-271 (567)
139 2qfc_A PLCR protein; TPR, HTH, 99.4 2.1E-12 7.3E-17 138.4 18.2 167 670-840 71-267 (293)
140 3u3w_A Transcriptional activat 99.4 4.6E-12 1.6E-16 135.8 20.7 162 645-810 80-267 (293)
141 2fo7_A Synthetic consensus TPR 99.4 2.3E-12 7.7E-17 118.4 14.5 129 643-812 4-135 (136)
142 2vgx_A Chaperone SYCD; alterna 99.4 1.8E-13 6.3E-18 131.5 7.2 100 630-729 11-111 (148)
143 2vgx_A Chaperone SYCD; alterna 99.4 1.5E-12 5E-17 125.1 12.9 108 734-846 10-125 (148)
144 4f3v_A ESX-1 secretion system 99.4 6.1E-13 2.1E-17 140.6 10.9 189 624-822 24-249 (282)
145 1p5q_A FKBP52, FK506-binding p 99.4 1.1E-13 3.6E-18 152.2 5.2 138 653-799 126-283 (336)
146 1hh8_A P67PHOX, NCF-2, neutrop 99.4 2.1E-12 7.1E-17 130.6 14.3 132 640-778 6-151 (213)
147 3u3w_A Transcriptional activat 99.4 6.6E-12 2.3E-16 134.5 18.5 160 677-840 78-267 (293)
148 3gw4_A Uncharacterized protein 99.4 1.1E-11 3.7E-16 123.8 18.9 159 650-812 2-179 (203)
149 2c2l_A CHIP, carboxy terminus 99.4 5.2E-13 1.8E-17 142.7 9.7 162 671-844 1-169 (281)
150 2fo7_A Synthetic consensus TPR 99.4 5.3E-12 1.8E-16 115.9 14.6 112 623-738 18-130 (136)
151 1dce_A Protein (RAB geranylger 99.4 3.1E-13 1.1E-17 158.7 6.8 181 624-813 47-271 (567)
152 2xcb_A PCRH, regulatory protei 99.4 1E-12 3.5E-17 124.8 8.8 106 629-738 7-113 (142)
153 2xcb_A PCRH, regulatory protei 99.4 1.2E-12 3.9E-17 124.4 8.8 94 662-764 6-102 (142)
154 3upv_A Heat shock protein STI1 99.4 4.6E-12 1.6E-16 117.1 12.4 115 637-760 1-124 (126)
155 4gcn_A Protein STI-1; structur 99.3 4E-12 1.4E-16 118.6 11.8 105 673-786 7-122 (127)
156 4e6h_A MRNA 3'-END-processing 99.3 1.6E-09 5.6E-14 129.0 36.8 391 435-842 48-536 (679)
157 1p5q_A FKBP52, FK506-binding p 99.3 1.1E-12 3.9E-17 143.9 8.9 138 630-776 137-293 (336)
158 1a17_A Serine/threonine protei 99.3 9.9E-12 3.4E-16 119.6 14.4 128 640-776 13-145 (166)
159 3mv2_B Coatomer subunit epsilo 99.3 4.8E-11 1.7E-15 127.7 21.0 247 522-820 20-293 (310)
160 1hh8_A P67PHOX, NCF-2, neutrop 99.3 1.5E-11 5.1E-16 124.2 16.4 129 675-814 7-155 (213)
161 2lni_A Stress-induced-phosphop 99.3 1.2E-11 4.2E-16 114.0 12.5 119 636-763 12-133 (133)
162 2e2e_A Formate-dependent nitri 99.3 5E-12 1.7E-16 124.2 10.3 119 651-778 21-145 (177)
163 1a17_A Serine/threonine protei 99.3 2.3E-11 7.7E-16 117.1 14.8 128 673-809 12-146 (166)
164 3sz7_A HSC70 cochaperone (SGT) 99.3 2.2E-11 7.5E-16 118.3 14.0 104 749-852 12-121 (164)
165 2vyi_A SGTA protein; chaperone 99.3 1.2E-11 4E-16 113.3 10.7 120 636-764 8-130 (131)
166 2lni_A Stress-induced-phosphop 99.3 1.9E-11 6.6E-16 112.7 12.0 117 670-795 12-133 (133)
167 3sz7_A HSC70 cochaperone (SGT) 99.3 1.4E-11 4.9E-16 119.6 11.1 113 636-757 7-122 (164)
168 4b4t_Q 26S proteasome regulato 99.3 5.7E-11 1.9E-15 133.7 17.5 195 641-839 5-245 (434)
169 3upv_A Heat shock protein STI1 99.3 2.7E-11 9.2E-16 111.9 12.1 105 708-821 5-119 (126)
170 2hr2_A Hypothetical protein; a 99.3 1.7E-11 5.9E-16 118.0 10.9 102 749-850 12-142 (159)
171 2e2e_A Formate-dependent nitri 99.3 2.1E-11 7.2E-16 119.7 11.9 124 717-849 20-154 (177)
172 4gcn_A Protein STI-1; structur 99.3 2E-11 6.8E-16 113.8 10.7 95 640-738 8-110 (127)
173 2fbn_A 70 kDa peptidylprolyl i 99.3 4.7E-12 1.6E-16 127.2 6.9 169 644-837 8-184 (198)
174 3mv2_B Coatomer subunit epsilo 99.2 1.5E-10 5.2E-15 123.8 18.6 248 430-707 24-286 (310)
175 2vyi_A SGTA protein; chaperone 99.2 2.5E-11 8.4E-16 111.2 10.8 120 668-796 6-130 (131)
176 2fbn_A 70 kDa peptidylprolyl i 99.2 5.2E-12 1.8E-16 126.9 6.1 146 637-808 35-185 (198)
177 3q49_B STIP1 homology and U bo 99.2 7E-11 2.4E-15 110.2 13.1 100 635-738 4-104 (137)
178 1kt0_A FKBP51, 51 kDa FK506-bi 99.2 3.8E-12 1.3E-16 145.8 5.2 139 653-800 247-405 (457)
179 3ro3_A PINS homolog, G-protein 99.2 8.1E-11 2.8E-15 111.7 13.4 136 674-813 9-162 (164)
180 3gw4_A Uncharacterized protein 99.2 5.5E-11 1.9E-15 118.6 12.8 141 634-778 19-177 (203)
181 1hxi_A PEX5, peroxisome target 99.2 3.9E-11 1.3E-15 110.8 10.7 97 643-748 20-117 (121)
182 2if4_A ATFKBP42; FKBP-like, al 99.2 4.5E-12 1.5E-16 139.3 5.0 151 671-844 176-333 (338)
183 1na0_A Designed protein CTPR3; 99.2 1.4E-10 4.8E-15 105.1 14.0 118 636-762 4-125 (125)
184 2hr2_A Hypothetical protein; a 99.2 5.2E-11 1.8E-15 114.6 11.2 100 640-748 11-134 (159)
185 1hxi_A PEX5, peroxisome target 99.2 7.5E-11 2.6E-15 108.9 11.6 96 749-844 18-119 (121)
186 4ajy_C Transcription elongatio 99.2 3.7E-11 1.3E-15 106.4 8.7 81 220-303 4-97 (97)
187 1kt0_A FKBP51, 51 kDa FK506-bi 99.2 2.2E-11 7.7E-16 139.4 9.1 130 632-770 260-407 (457)
188 1na0_A Designed protein CTPR3; 99.2 2.1E-10 7.2E-15 103.9 13.7 116 670-794 4-125 (125)
189 1elw_A TPR1-domain of HOP; HOP 99.2 2.9E-10 9.9E-15 102.0 14.1 110 640-758 4-116 (118)
190 3rkv_A Putative peptidylprolyl 99.2 1.3E-10 4.6E-15 112.4 12.5 96 749-844 12-131 (162)
191 3q49_B STIP1 homology and U bo 99.2 1.8E-10 6.1E-15 107.4 12.1 102 668-778 3-107 (137)
192 3rkv_A Putative peptidylprolyl 99.1 1.3E-10 4.4E-15 112.5 10.2 114 640-762 11-146 (162)
193 1wao_1 Serine/threonine protei 99.1 6.2E-12 2.1E-16 144.8 0.9 119 645-772 11-134 (477)
194 2kck_A TPR repeat; tetratricop 99.1 1.6E-10 5.3E-15 102.9 10.0 100 636-739 2-105 (112)
195 1elw_A TPR1-domain of HOP; HOP 99.1 4.7E-10 1.6E-14 100.5 13.3 103 749-851 5-113 (118)
196 4b4t_Q 26S proteasome regulato 99.1 2.8E-10 9.7E-15 128.0 14.2 214 552-810 8-246 (434)
197 3ro3_A PINS homolog, G-protein 99.1 2.4E-10 8.2E-15 108.4 11.6 135 640-778 9-159 (164)
198 1wao_1 Serine/threonine protei 99.1 2E-12 7E-17 148.9 -4.0 134 673-815 5-156 (477)
199 2dba_A Smooth muscle cell asso 99.1 3.4E-10 1.2E-14 106.4 11.9 115 635-758 23-143 (148)
200 2kck_A TPR repeat; tetratricop 99.1 4.4E-10 1.5E-14 99.9 10.2 96 749-844 7-111 (112)
201 1fs1_B SKP1, cyclin A/CDK2-ass 99.1 4.7E-10 1.6E-14 106.3 10.4 92 220-319 4-122 (141)
202 3k9i_A BH0479 protein; putativ 99.1 1.5E-10 5.1E-15 105.7 6.8 93 761-853 3-104 (117)
203 2dba_A Smooth muscle cell asso 99.1 1.6E-09 5.4E-14 101.8 14.1 116 670-822 24-141 (148)
204 1elr_A TPR2A-domain of HOP; HO 99.0 6.7E-10 2.3E-14 101.5 10.7 117 673-793 3-125 (131)
205 2if4_A ATFKBP42; FKBP-like, al 99.0 1.1E-10 3.7E-15 128.2 5.7 154 637-815 176-334 (338)
206 2xev_A YBGF; tetratricopeptide 99.0 1.5E-09 5E-14 99.9 12.5 102 750-851 4-117 (129)
207 1zu2_A Mitochondrial import re 99.0 2.3E-10 8E-15 109.8 7.1 65 688-761 16-93 (158)
208 2xev_A YBGF; tetratricopeptide 99.0 1.9E-09 6.7E-14 99.1 13.0 98 642-748 4-108 (129)
209 1elr_A TPR2A-domain of HOP; HO 99.0 6E-10 2.1E-14 101.9 8.9 114 639-761 3-125 (131)
210 1ihg_A Cyclophilin 40; ppiase 99.0 8.7E-10 3E-14 122.6 11.6 119 641-768 224-361 (370)
211 3k9i_A BH0479 protein; putativ 99.0 1.9E-09 6.3E-14 98.4 11.6 91 719-818 2-99 (117)
212 1ihg_A Cyclophilin 40; ppiase 99.0 1.8E-09 6.2E-14 120.0 13.6 132 674-831 223-362 (370)
213 2p1m_A SKP1-like protein 1A; F 99.0 1.4E-10 4.7E-15 112.5 2.0 110 220-336 6-145 (160)
214 1zu2_A Mitochondrial import re 98.9 5.6E-10 1.9E-14 107.2 5.5 89 651-748 13-123 (158)
215 2uy1_A Cleavage stimulation fa 98.9 8.9E-07 3E-11 102.0 33.0 169 658-836 197-380 (493)
216 1na3_A Designed protein CTPR2; 98.8 1.9E-08 6.5E-13 86.1 10.5 84 638-721 7-91 (91)
217 2kat_A Uncharacterized protein 98.8 1.3E-08 4.6E-13 92.0 9.4 82 625-706 4-85 (115)
218 2l6j_A TPR repeat-containing p 98.8 2.1E-08 7.3E-13 89.2 10.2 90 640-729 4-100 (111)
219 3ma5_A Tetratricopeptide repea 98.8 1.8E-08 6.1E-13 89.3 9.4 88 635-722 2-92 (100)
220 2kat_A Uncharacterized protein 98.8 2.8E-08 9.7E-13 89.8 10.9 81 658-742 3-84 (115)
221 1klx_A Cysteine rich protein B 98.8 4.1E-08 1.4E-12 92.7 12.0 118 689-820 10-135 (138)
222 2uy1_A Cleavage stimulation fa 98.7 6.1E-06 2.1E-10 95.0 31.8 196 626-838 199-412 (493)
223 1klx_A Cysteine rich protein B 98.7 6E-08 2E-12 91.6 12.3 120 654-788 9-137 (138)
224 2kc7_A BFR218_protein; tetratr 98.7 1.6E-08 5.4E-13 88.7 7.2 90 752-845 4-96 (99)
225 2l6j_A TPR repeat-containing p 98.7 8E-09 2.7E-13 92.0 3.1 86 749-834 5-102 (111)
226 3n71_A Histone lysine methyltr 98.6 6E-08 2.1E-12 111.3 10.3 128 646-777 315-464 (490)
227 3ma5_A Tetratricopeptide repea 98.6 6.9E-08 2.4E-12 85.4 8.2 66 669-738 2-68 (100)
228 3n71_A Histone lysine methyltr 98.6 8.8E-08 3E-12 109.9 11.1 126 681-810 316-465 (490)
229 1na3_A Designed protein CTPR2; 98.6 9.6E-08 3.3E-12 81.6 8.3 83 671-762 6-91 (91)
230 3ly7_A Transcriptional activat 98.6 1.7E-06 5.9E-11 94.1 19.8 151 665-818 185-348 (372)
231 2kc7_A BFR218_protein; tetratr 98.5 7.3E-08 2.5E-12 84.3 5.1 69 644-712 4-74 (99)
232 1hv2_A Elongin C, ELC1; protei 98.5 4.9E-07 1.7E-11 79.8 8.9 80 220-303 6-99 (99)
233 3u64_A Protein TP_0956; tetrat 98.4 9.1E-06 3.1E-10 85.0 19.0 81 763-843 178-273 (301)
234 3ly7_A Transcriptional activat 98.4 1E-05 3.5E-10 88.0 18.1 77 632-709 269-345 (372)
235 3v7d_A Suppressor of kinetocho 98.3 2.3E-06 7.7E-11 83.4 11.4 107 220-330 9-147 (169)
236 2fnj_C Transcription elongatio 98.3 4.7E-07 1.6E-11 79.5 5.8 81 220-303 3-96 (96)
237 3drz_A BTB/POZ domain-containi 98.3 2.4E-06 8.2E-11 76.6 10.5 95 218-316 5-106 (107)
238 3u64_A Protein TP_0956; tetrat 98.3 1.2E-05 4E-10 84.2 17.1 102 634-739 146-268 (301)
239 3bee_A Putative YFRE protein; 98.3 3.6E-06 1.2E-10 73.5 9.9 72 636-707 2-76 (93)
240 3qww_A SET and MYND domain-con 98.1 4.8E-06 1.6E-10 93.9 8.7 68 749-816 341-423 (433)
241 1pc2_A Mitochondria fission pr 98.1 1.5E-05 5.3E-10 75.5 10.7 87 629-715 21-113 (152)
242 3qwp_A SET and MYND domain-con 98.1 1.5E-05 5.2E-10 89.9 12.6 98 717-818 297-414 (429)
243 2v5f_A Prolyl 4-hydroxylase su 98.1 2.3E-05 7.8E-10 69.7 10.9 74 749-822 6-88 (104)
244 3qww_A SET and MYND domain-con 98.0 4E-06 1.4E-10 94.6 5.8 88 687-778 311-412 (433)
245 2v5f_A Prolyl 4-hydroxylase su 97.9 6E-05 2.1E-09 66.9 11.1 76 640-715 5-88 (104)
246 3bee_A Putative YFRE protein; 97.9 2.3E-05 7.9E-10 68.3 7.7 66 670-739 2-71 (93)
247 3qwp_A SET and MYND domain-con 97.9 1.3E-05 4.5E-10 90.4 7.8 108 650-761 297-426 (429)
248 1vcb_B Protein (elongin C); tu 97.9 1.5E-05 5.3E-10 71.7 6.6 81 220-303 19-112 (112)
249 1pc2_A Mitochondria fission pr 97.9 3.4E-05 1.2E-09 73.1 8.8 89 656-753 14-110 (152)
250 2eqx_A Kelch repeat and BTB do 97.8 1.5E-05 5E-10 71.3 5.1 49 315-364 5-53 (105)
251 4g26_A Pentatricopeptide repea 97.6 0.0021 7.3E-08 73.8 19.9 158 648-813 34-210 (501)
252 3drx_A BTB/POZ domain-containi 97.5 0.00025 8.6E-09 69.9 9.5 98 215-316 8-112 (202)
253 4g26_A Pentatricopeptide repea 97.4 0.0041 1.4E-07 71.4 18.4 158 677-838 29-203 (501)
254 1nzn_A CGI-135 protein, fissio 97.3 0.0012 4.1E-08 60.3 10.1 88 629-716 24-117 (126)
255 1nzn_A CGI-135 protein, fissio 97.0 0.0025 8.4E-08 58.2 8.7 91 656-755 17-115 (126)
256 3ffl_A Anaphase-promoting comp 96.7 0.0061 2.1E-07 58.1 9.8 129 642-790 22-165 (167)
257 1y8m_A FIS1; mitochondria, unk 96.5 0.032 1.1E-06 51.7 12.7 79 637-715 36-119 (144)
258 4h7y_A Dual specificity protei 96.3 0.02 7E-07 53.4 9.7 69 749-818 62-132 (161)
259 3o48_A Mitochondria fission 1 96.2 0.027 9.4E-07 51.5 10.4 78 638-715 38-120 (134)
260 3kvt_A Potassium channel prote 95.7 0.006 2.1E-07 54.9 3.5 84 220-307 7-93 (115)
261 4h7y_A Dual specificity protei 95.6 0.11 3.7E-06 48.5 11.5 119 668-794 7-141 (161)
262 1s1g_A Potassium voltage-gated 95.5 0.018 6.1E-07 52.5 6.0 89 220-315 15-110 (124)
263 3o48_A Mitochondria fission 1 95.4 0.036 1.2E-06 50.7 7.4 69 749-817 41-115 (134)
264 3ffl_A Anaphase-promoting comp 95.2 0.066 2.3E-06 51.0 9.0 109 708-821 21-162 (167)
265 2nz0_B Potassium voltage-gated 95.2 0.012 4.2E-07 54.8 3.8 80 220-306 37-121 (140)
266 1nn7_A Potassium channel KV4.2 95.0 0.0069 2.4E-07 53.6 1.4 80 220-306 2-86 (105)
267 1t1d_A Protein (potassium chan 95.0 0.013 4.5E-07 51.3 3.2 84 220-307 3-90 (100)
268 3txn_A 26S proteasome regulato 94.9 0.25 8.7E-06 54.3 13.9 115 645-763 104-235 (394)
269 1y8m_A FIS1; mitochondria, unk 94.9 0.2 6.7E-06 46.4 10.9 73 671-752 36-115 (144)
270 3txn_A 26S proteasome regulato 94.5 0.5 1.7E-05 51.9 15.2 164 642-810 21-211 (394)
271 4gns_B Protein CSD3, chitin bi 93.0 1.8 6.2E-05 51.5 17.3 59 642-700 339-397 (754)
272 1qsa_A Protein (soluble lytic 92.1 21 0.00073 41.4 29.6 121 680-808 220-347 (618)
273 3mkq_B Coatomer subunit alpha; 91.8 2.2 7.4E-05 41.2 12.9 109 638-773 6-114 (177)
274 3mkq_A Coatomer beta'-subunit; 91.7 2.9 9.9E-05 49.9 17.4 26 749-774 682-707 (814)
275 4gns_B Protein CSD3, chitin bi 91.5 0.62 2.1E-05 55.4 10.6 55 675-729 338-393 (754)
276 3kae_A CDC27, possible protein 91.2 10 0.00035 35.9 17.2 30 749-778 115-144 (242)
277 1zbp_A Hypothetical protein VP 90.8 2.9 9.8E-05 43.0 13.4 59 649-707 6-64 (273)
278 3kae_A CDC27, possible protein 89.9 2.8 9.5E-05 39.8 11.2 66 517-582 64-148 (242)
279 1zbp_A Hypothetical protein VP 89.4 2.1 7.2E-05 44.0 11.0 127 524-673 6-133 (273)
280 4fhn_B Nucleoporin NUP120; pro 89.1 5.9 0.0002 49.9 17.5 138 650-796 822-987 (1139)
281 1ya0_A SMG-7 transcript varian 87.9 2 6.8E-05 48.7 10.7 77 643-719 155-232 (497)
282 2ff4_A Probable regulatory pro 87.3 10 0.00036 41.3 16.0 58 645-702 176-233 (388)
283 4b4t_P 26S proteasome regulato 86.3 22 0.00076 39.4 18.2 184 653-839 29-247 (445)
284 4b4t_S RPN3, 26S proteasome re 86.2 1.8 6.1E-05 48.9 8.9 129 645-778 141-300 (523)
285 3spa_A Mtrpol, DNA-directed RN 86.0 4.2 0.00014 49.7 12.4 134 708-847 128-266 (1134)
286 2wpv_A GET4, UPF0363 protein Y 86.0 20 0.0007 37.7 16.5 27 638-664 132-158 (312)
287 3lpz_A GET4 (YOR164C homolog); 85.7 40 0.0014 35.8 27.9 27 671-697 133-159 (336)
288 2ff4_A Probable regulatory pro 85.4 5.2 0.00018 43.7 12.2 86 649-738 124-232 (388)
289 1ya0_A SMG-7 transcript varian 85.1 2.3 8E-05 48.1 9.4 74 749-822 153-228 (497)
290 3mkq_A Coatomer beta'-subunit; 85.1 7.3 0.00025 46.3 14.5 46 650-700 662-707 (814)
291 4b4t_R RPN7, 26S proteasome re 85.0 0.8 2.7E-05 51.1 5.4 88 642-729 133-230 (429)
292 4b4t_P 26S proteasome regulato 81.1 8.1 0.00028 43.0 11.7 94 642-739 139-246 (445)
293 3mkq_B Coatomer subunit alpha; 80.6 21 0.00071 34.3 12.7 133 673-836 7-141 (177)
294 4b4t_S RPN3, 26S proteasome re 80.5 1.8 6.2E-05 48.9 5.9 132 682-813 144-303 (523)
295 4b4t_R RPN7, 26S proteasome re 80.4 3.8 0.00013 45.5 8.7 102 673-778 130-238 (429)
296 3spa_A Mtrpol, DNA-directed RN 78.1 9.2 0.00031 46.8 11.3 92 642-738 129-228 (1134)
297 3lpz_A GET4 (YOR164C homolog); 78.1 74 0.0025 33.7 28.1 85 637-721 183-296 (336)
298 4ady_A RPN2, 26S proteasome re 76.9 1.4E+02 0.0048 36.3 32.9 121 678-807 380-517 (963)
299 1qsa_A Protein (soluble lytic 75.1 1.3E+02 0.0043 34.8 36.8 177 647-835 221-438 (618)
300 2eqx_A Kelch repeat and BTB do 71.7 3.4 0.00011 36.0 4.1 34 286-319 8-41 (105)
301 2vkp_A BTB/POZ domain-containi 71.6 3.4 0.00012 35.9 4.2 33 318-351 77-109 (109)
302 4fhn_B Nucleoporin NUP120; pro 70.4 30 0.001 43.4 14.0 100 630-729 832-960 (1139)
303 2r9r_B Paddle chimera voltage 70.3 4.2 0.00014 46.3 5.6 81 220-307 54-141 (514)
304 4ady_A RPN2, 26S proteasome re 67.7 2.2E+02 0.0076 34.5 23.3 31 101-134 65-95 (963)
305 2z8h_A Transcription regulator 54.2 5.2 0.00018 36.6 2.0 35 318-353 101-135 (138)
306 2yy9_A Zinc finger and BTB dom 51.5 6.1 0.00021 36.0 2.0 36 318-354 87-122 (135)
307 1r29_A B-cell lymphoma 6 prote 51.3 12 0.0004 33.4 3.9 32 318-350 95-126 (127)
308 3htm_A Speckle-type POZ protei 51.1 9.4 0.00032 36.0 3.4 34 286-319 132-165 (172)
309 2wpv_A GET4, UPF0363 protein Y 49.9 2.4E+02 0.0083 29.3 19.9 28 671-698 131-158 (312)
310 4a1g_A Mitotic checkpoint seri 48.9 79 0.0027 29.3 9.1 76 730-811 47-132 (152)
311 3ubw_A 14-3-3E, 14-3-3 protein 48.1 2.3E+02 0.008 28.6 15.1 49 691-739 173-231 (261)
312 2vpk_A Myoneurin; transcriptio 45.2 15 0.00051 32.1 3.5 30 318-348 86-115 (116)
313 1buo_A POZ domain, protein (pr 44.8 21 0.00073 31.4 4.5 32 318-350 89-120 (121)
314 2q81_A MIZ-1 protein; BTB/POZ 44.4 18 0.0006 31.9 3.9 30 318-348 88-117 (119)
315 3ax2_A Mitochondrial import re 44.0 37 0.0013 27.4 5.2 28 423-450 21-48 (73)
316 2ast_A S-phase kinase-associat 44.0 32 0.0011 32.1 5.9 77 286-366 49-140 (159)
317 3b84_A Zinc finger and BTB dom 42.9 11 0.00039 33.2 2.4 32 318-350 86-117 (119)
318 1fs1_B SKP1, cyclin A/CDK2-ass 40.9 82 0.0028 28.7 8.0 94 268-365 24-134 (141)
319 1wy6_A Hypothetical protein ST 40.5 1.1E+02 0.0039 28.0 8.3 57 518-574 93-151 (172)
320 2if5_A Zinc finger and BTB dom 40.1 25 0.00087 30.7 4.3 29 318-347 91-119 (120)
321 3hqi_A Speckle-type POZ protei 39.0 17 0.00058 38.0 3.4 34 286-319 272-305 (312)
322 4gq2_M Nucleoporin NUP120; bet 38.9 2E+02 0.0068 35.1 13.4 88 646-741 816-927 (950)
323 2crb_A Nuclear receptor bindin 38.4 42 0.0014 28.2 4.8 28 420-447 16-43 (97)
324 2w2u_A Hypothetical P60 katani 34.0 55 0.0019 27.0 5.0 22 426-447 26-47 (83)
325 3u84_A Menin; MLL, JUND, ledgf 33.6 1.1E+02 0.0039 33.0 8.3 66 466-542 275-345 (550)
326 3uzd_A 14-3-3 protein gamma; s 32.5 4E+02 0.014 26.7 14.9 49 691-739 148-206 (248)
327 2v6y_A AAA family ATPase, P60 32.0 54 0.0018 27.0 4.6 16 759-774 22-37 (83)
328 3re2_A Predicted protein; meni 30.8 1.4E+02 0.0048 31.7 8.3 66 466-542 253-323 (472)
329 3t5v_B Nuclear mRNA export pro 30.0 1.1E+02 0.0038 33.9 8.1 108 335-451 137-253 (455)
330 2w2u_A Hypothetical P60 katani 29.9 88 0.003 25.8 5.5 22 755-776 26-47 (83)
331 3re2_A Predicted protein; meni 28.6 86 0.0029 33.3 6.3 43 767-809 276-325 (472)
332 2ppi_A Gigaxonin; BTB domain, 28.3 24 0.00083 32.3 2.1 29 318-347 115-143 (144)
333 4eoz_A Speckle-type POZ protei 27.7 25 0.00087 31.7 2.1 32 321-352 93-124 (145)
334 3m5b_A Zinc finger and BTB dom 26.6 45 0.0015 29.3 3.5 31 318-349 87-117 (119)
335 3iqu_A 14-3-3 protein sigma; s 26.1 4.9E+02 0.017 25.8 16.7 49 690-738 149-207 (236)
336 2v6y_A AAA family ATPase, P60 25.8 94 0.0032 25.5 5.0 19 429-447 21-39 (83)
337 2ijq_A Hypothetical protein; s 25.7 2.1E+02 0.0073 26.7 8.0 60 644-703 36-104 (161)
338 1om2_A Protein (mitochondrial 25.3 86 0.0029 26.6 4.7 30 678-707 24-53 (95)
339 2ymb_A MITD1, MIT domain-conta 25.1 15 0.00052 37.3 0.0 43 387-447 9-51 (257)
340 3esl_A Checkpoint serine/threo 24.4 4.5E+02 0.015 25.4 10.3 61 749-810 81-145 (202)
341 1om2_A Protein (mitochondrial 24.2 66 0.0023 27.3 3.8 27 423-449 24-50 (95)
342 2wvi_A Mitotic checkpoint seri 24.1 1.8E+02 0.0062 27.2 7.3 75 730-810 42-126 (164)
343 4a5x_A MITD1, MIT domain-conta 24.0 90 0.0031 25.9 4.6 18 430-447 27-44 (86)
344 4gq2_M Nucleoporin NUP120; bet 23.9 2.6E+02 0.0089 34.0 10.8 77 628-704 828-927 (950)
345 2ijq_A Hypothetical protein; s 23.8 4.2E+02 0.014 24.7 9.6 59 519-577 36-104 (161)
346 3i3n_A Kelch-like protein 11; 23.3 46 0.0016 34.1 3.3 34 286-319 139-172 (279)
347 3iqu_A 14-3-3 protein sigma; s 22.9 5.7E+02 0.019 25.4 14.5 45 764-808 149-204 (236)
348 2npm_A 14-3-3 domain containin 22.8 6E+02 0.02 25.6 16.1 50 690-739 172-230 (260)
349 3ga1_A Nucleus accumbens-assoc 22.8 16 0.00054 32.7 -0.4 32 318-350 96-127 (129)
350 2br9_A 14-3-3E, 14-3-3 protein 22.3 5.8E+02 0.02 25.3 14.3 42 517-558 7-50 (234)
351 3hve_A Gigaxonin; ubiquitin, c 21.9 58 0.002 32.7 3.7 34 318-352 99-132 (256)
352 2plx_B Peptide inhibitor; heli 21.9 52 0.0018 19.8 1.9 22 325-346 2-23 (26)
353 2v6x_A Vacuolar protein sortin 21.8 1E+02 0.0035 25.3 4.5 18 430-447 24-41 (85)
354 3u84_A Menin; MLL, JUND, ledgf 21.7 3.4E+02 0.012 29.4 9.3 40 438-477 298-344 (550)
355 3ax2_A Mitochondrial import re 20.9 1.9E+02 0.0065 23.2 5.7 33 645-677 22-54 (73)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=9.8e-36 Score=333.15 Aligned_cols=360 Identities=16% Similarity=0.095 Sum_probs=216.2
Q ss_pred hhhhHhhhhcHHHHHHHHHHHHHhcc--hhhhhhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHhh----ccCcc
Q 003035 425 LGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSL----YNLGR 498 (855)
Q Consensus 425 LG~~~l~~g~~~eA~~~~~~Al~~~~--~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~----~~~~~ 498 (855)
+|..+++.|++++|+..|+++++..| ..++..++.++...|+.++|...++.+++..|.+..++...+. .+..+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 44455555555555555555554432 2344455555555555544444433333333333222221111 01123
Q ss_pred hHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003035 499 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLAL 577 (855)
Q Consensus 499 ~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~-~~~l~lra~~y~~~gd~~~A~~~~~~aL~~ 577 (855)
+|+..|+++++++|++..+|..+|.++...|++++|+..|+++++.+|+ ...+..+|.++..+|++++|++.|++++..
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3333344444444444444555555555555555555555555555542 333444455555555555555544444443
Q ss_pred CCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHH
Q 003035 578 ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQK 657 (855)
Q Consensus 578 ~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~ 657 (855)
+|.+...+..+|.++...|+++
T Consensus 165 ----------------------------------------------------------~p~~~~~~~~l~~~~~~~g~~~ 186 (388)
T 1w3b_A 165 ----------------------------------------------------------QPNFAVAWSNLGCVFNAQGEIW 186 (388)
T ss_dssp ----------------------------------------------------------CTTCHHHHHHHHHHHHTTTCHH
T ss_pred ----------------------------------------------------------CCCCHHHHHHHHHHHHHcCCHH
Confidence 4444445556666677777777
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHH
Q 003035 658 AAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEE 736 (855)
Q Consensus 658 ~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~ 736 (855)
+|+..|+++++.+|++..++..+|.++...|++++|+..|+++++++|++ .+++.+|.++...|++++|+.. |++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~----~~~ 262 (388)
T 1w3b_A 187 LAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDT----YRR 262 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH----HHH
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHH----HHH
Confidence 77777777777777777777777777777777777777777777777766 7777777777777777777777 777
Q ss_pred HhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccC
Q 003035 737 ALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQY 812 (855)
Q Consensus 737 al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~ 812 (855)
++ ...|+ .++.++|.++...|++++|++.|++++++. ++.++.++|.++...|++++|+..++++++..|+
T Consensus 263 al-----~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 337 (388)
T 1w3b_A 263 AI-----ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337 (388)
T ss_dssp HH-----HTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT
T ss_pred HH-----hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 77 55555 667777777777777777777777777766 6667777777777777777777777777777777
Q ss_pred CHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCCcccchhhh
Q 003035 813 SASAFEKRSE----YSDREMAKNDLNMATQLDPLRTYPYRYRA 851 (855)
Q Consensus 813 ~~~a~~~lg~----~g~~eeA~~~~~kAl~l~P~~~~~~~~~a 851 (855)
++.++..+|. .|++++|+..|+++++++|++..+|...+
T Consensus 338 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg 380 (388)
T 1w3b_A 338 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 380 (388)
T ss_dssp CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHH
Confidence 7777777776 67777777777777777777766665554
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=4.8e-35 Score=327.53 Aligned_cols=365 Identities=16% Similarity=0.109 Sum_probs=317.1
Q ss_pred HHHhhcccccchhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhcch--hhhhhHHHHHHHh
Q 003035 387 LSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHI--YSLAGLARAKYKV 464 (855)
Q Consensus 387 La~~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~~--~a~~~la~~~~~~ 464 (855)
+|..+...|+ +++|+..++++++.+|++. .++..+|.+++.+|++++|...++++++..|. .++..+|.++..+
T Consensus 5 ~a~~~~~~g~-~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~ 80 (388)
T 1w3b_A 5 LAHREYQAGD-FEAAERHCMQLWRQEPDNT---GVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKER 80 (388)
T ss_dssp HHHHHHHHTC-HHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCC-HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHC
Confidence 4566677787 9999999999999988874 47789999999999999999999999987654 5789999999999
Q ss_pred CChHHHHHHHHhHHHcCCCchHHHHHHhh----ccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHH
Q 003035 465 GQQYSAYKLINSIISEHKPTGWMYQERSL----YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDR 540 (855)
Q Consensus 465 g~~~~A~~~l~~~i~~~p~~~~~y~~~~~----~~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k 540 (855)
|++++|+..++++++..|++...+...+. .+..++|+..++++++++|++..++..+|.++...|++++|+..|++
T Consensus 81 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999999999999998876655543 36679999999999999999999999999999999999999999999
Q ss_pred HHccCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhccc
Q 003035 541 IIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSS 619 (855)
Q Consensus 541 ~l~~~p~-~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~ 619 (855)
++..+|+ ...+..+|.++...|++++|+..|++++.++|++
T Consensus 161 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------------------------------------- 202 (388)
T 1w3b_A 161 AIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF-------------------------------------- 202 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC--------------------------------------
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--------------------------------------
Confidence 9999995 7888899999999999999999999998877653
Q ss_pred ccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 003035 620 VDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEK 699 (855)
Q Consensus 620 ~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~k 699 (855)
..+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++
T Consensus 203 --------------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 262 (388)
T 1w3b_A 203 --------------------LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRR 262 (388)
T ss_dssp --------------------HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 234456677778888888888888888888888888888888888888888888888888
Q ss_pred HHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003035 700 SISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALD 776 (855)
Q Consensus 700 al~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~ 776 (855)
+++++|++ .+++.+|.++...|++++|+.. |++++ ...|. .+++++|.++...|++++|++.|+++++
T Consensus 263 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~----~~~al-----~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 263 AIELQPHFPDAYCNLANALKEKGSVAEAEDC----YNTAL-----RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp HHHTCSSCHHHHHHHHHHHHHHSCHHHHHHH----HHHHH-----HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHH-----hhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888888 8888888888888888888888 88888 66666 7888888888888888888888888888
Q ss_pred cc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh
Q 003035 777 IK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE 822 (855)
Q Consensus 777 ~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~ 822 (855)
+. +..+++++|.++..+|++++|+..|+++++++|+++.+++++|.
T Consensus 334 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~ 381 (388)
T 1w3b_A 334 VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 381 (388)
T ss_dssp SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHH
Confidence 87 77888888888888888888888888888888888888888876
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-34 Score=340.73 Aligned_cols=432 Identities=14% Similarity=0.049 Sum_probs=350.8
Q ss_pred HHHHHHhhcccccchhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHh-cchhhhhhHHHHHH
Q 003035 384 YYFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADA-GHIYSLAGLARAKY 462 (855)
Q Consensus 384 ~~~La~~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~-~~~~a~~~la~~~~ 462 (855)
+..++..+...++ +++|+.++++++...|++ ..+..+|.++...|++++|+..|++++.. .+..++..++.+|.
T Consensus 87 ~~~~~~~~~~~g~-~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (597)
T 2xpi_A 87 LRLWRHDALMQQQ-YKCAAFVGEKVLDITGNP----NDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLV 161 (597)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccC-chHHHHHHHHHHhhCCCc----hHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHH
Confidence 4455566666666 777777777777766654 34566777777777887777777777543 34456677777777
Q ss_pred HhCChHHHHHHHHhHHHcC----------------CCchHHHHHHhh----ccCcchHHHHHHHHHHhCCCCchhHHHHH
Q 003035 463 KVGQQYSAYKLINSIISEH----------------KPTGWMYQERSL----YNLGREKIVDLNYASELDPTLSFPYKYRA 522 (855)
Q Consensus 463 ~~g~~~~A~~~l~~~i~~~----------------p~~~~~y~~~~~----~~~~~~A~~~l~~a~~ldP~~~~a~~~~a 522 (855)
..|++++|+..+++..... +.+...+...+. .+..++|+..|+++++.+|++..++..++
T Consensus 162 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 241 (597)
T 2xpi_A 162 KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLV 241 (597)
T ss_dssp HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHH
Confidence 7777777777777543332 112333322221 24456777777777777777776665553
Q ss_pred --------------------------------------HHHHHhCCHHHHHHHHHHHHccCCCHhHHHHHHHHHHHcCCH
Q 003035 523 --------------------------------------VAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDY 564 (855)
Q Consensus 523 --------------------------------------~~~~~~~~~~~A~~~~~k~l~~~p~~~~l~lra~~y~~~gd~ 564 (855)
..|.+.|++++|+..|++++...++...+..++.+|...|++
T Consensus 242 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 321 (597)
T 2xpi_A 242 SNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRF 321 (597)
T ss_dssp HTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCH
T ss_pred HhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCH
Confidence 345578999999999999998866888899999999999999
Q ss_pred HHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHH
Q 003035 565 ESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRF 644 (855)
Q Consensus 565 ~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~ 644 (855)
++|++.|++++..+|++......+ .. .....+++ ..++..+.++++.+|.+...+.
T Consensus 322 ~~A~~~~~~~~~~~~~~~~~~~~l-----~~-~~~~~g~~------------------~~A~~~~~~~~~~~~~~~~~~~ 377 (597)
T 2xpi_A 322 IDVLAITTKILEIDPYNLDVYPLH-----LA-SLHESGEK------------------NKLYLISNDLVDRHPEKAVTWL 377 (597)
T ss_dssp HHHHHHHHHHHHHCTTCCTTHHHH-----HH-HHHHHTCH------------------HHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHHHHHHHHcCcccHHHHHHH-----HH-HHHHhCCH------------------HHHHHHHHHHHhhCcccHHHHH
Confidence 999999999999999864332111 11 11111111 1256677888899999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCC
Q 003035 645 RQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLD 723 (855)
Q Consensus 645 ~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~ 723 (855)
.++.++.+.|++++|++.|+++++.+|++..++..+|.++...|++++|+..|+++++..|++ .+++.+|.+|...|++
T Consensus 378 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 457 (597)
T 2xpi_A 378 AVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNI 457 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCH
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred chhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhc------c-c--HHHHHHHHHHHHH
Q 003035 724 PESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDI------K-H--TRAHQGLARVYYL 792 (855)
Q Consensus 724 ~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~------~-~--~~a~~~lg~~~~~ 792 (855)
++|+.. |++++ ...|. .+|+.+|.+|...|++++|++.|++++++ + + ..++..+|.++..
T Consensus 458 ~~A~~~----~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 528 (597)
T 2xpi_A 458 LLANEY----LQSSY-----ALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528 (597)
T ss_dssp HHHHHH----HHHHH-----HHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred HHHHHH----HHHHH-----HhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence 999999 99999 65555 88999999999999999999999999998 3 3 7899999999999
Q ss_pred cCCHHHHHHHHHHHHHHccCCHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCCcccchhhhcc
Q 003035 793 KNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLDPLRTYPYRYRAAE 853 (855)
Q Consensus 793 ~g~~~~A~~~~~kal~~~p~~~~a~~~lg~----~g~~eeA~~~~~kAl~l~P~~~~~~~~~a~~ 853 (855)
.|++++|++.++++++.+|+++.+|..+|. .|++++|+..|+++++++|++..+|...+-+
T Consensus 529 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 593 (597)
T 2xpi_A 529 LKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593 (597)
T ss_dssp TTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHT
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 999999999999999999999999999999 9999999999999999999998888776643
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-31 Score=314.97 Aligned_cols=405 Identities=11% Similarity=-0.008 Sum_probs=346.9
Q ss_pred HHHHHHhhcccccchhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhc--------------
Q 003035 384 YYFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAG-------------- 449 (855)
Q Consensus 384 ~~~La~~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~-------------- 449 (855)
++.++.++...++ .+.|+..+++++..+++ ..++..+|.+|.+.|++++|++.|++.....
T Consensus 120 ~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (597)
T 2xpi_A 120 AFWLAQVYCCTGD-YARAKCLLTKEDLYNRS----SACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDG 194 (597)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHTCGGGTC----HHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCS
T ss_pred HHHHHHHHHHcCc-HHHHHHHHHHHhccccc----hhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccccccccc
Confidence 4678889998998 99999999999776544 3478899999999999999999998643222
Q ss_pred ----chhhhhhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHhh--------------------------------
Q 003035 450 ----HIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSL-------------------------------- 493 (855)
Q Consensus 450 ----~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~-------------------------------- 493 (855)
...++..+|.+|...|++++|+..++++++..|++...+...+.
T Consensus 195 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 274 (597)
T 2xpi_A 195 GIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSL 274 (597)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHH
Confidence 24578899999999999999999999999999987665432211
Q ss_pred ----------ccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCC-CHhHHHHHHHHHHHcC
Q 003035 494 ----------YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAAD 562 (855)
Q Consensus 494 ----------~~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p-~~~~l~lra~~y~~~g 562 (855)
.+..++|+..++++++. |.+...+..+|.++...|++++|+..|++++..+| +...+..++.++...|
T Consensus 275 ~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 353 (597)
T 2xpi_A 275 YMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESG 353 (597)
T ss_dssp HHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHT
T ss_pred HHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhC
Confidence 12336788888888887 78899999999999999999999999999999888 4677888899999999
Q ss_pred CHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHH
Q 003035 563 DYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFL 642 (855)
Q Consensus 563 d~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~ 642 (855)
++++|+..+++++..+|++......++ .+....+++ ..++..+.++++.+|.+...
T Consensus 354 ~~~~A~~~~~~~~~~~~~~~~~~~~l~------~~~~~~g~~------------------~~A~~~~~~~~~~~~~~~~~ 409 (597)
T 2xpi_A 354 EKNKLYLISNDLVDRHPEKAVTWLAVG------IYYLCVNKI------------------SEARRYFSKSSTMDPQFGPA 409 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTSHHHHHHHH------HHHHHTTCH------------------HHHHHHHHHHHHHCTTCHHH
T ss_pred CHHHHHHHHHHHHhhCcccHHHHHHHH------HHHHHhccH------------------HHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999998653322111 111111111 23567788899999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCC
Q 003035 643 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTN 721 (855)
Q Consensus 643 ~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g 721 (855)
+..++.++.+.|++++|++.|+++++..|++..++..+|.++...|++++|+..|+++++..|++ .++..+|.+|...|
T Consensus 410 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (597)
T 2xpi_A 410 WIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKS 489 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCchhHHHHHHHHHHHhcCCCC-CCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCC
Q 003035 722 LDPESSTYVIQLLEEALRCPSD-GLRKG---QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNE 795 (855)
Q Consensus 722 ~~~~A~~~~~~lle~al~~~~~-~~~p~---~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~ 795 (855)
++++|+.. |+++++...+ ..+|+ .+|..+|.+|...|++++|++.|+++++++ ++.++..+|.+|...|+
T Consensus 490 ~~~~A~~~----~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (597)
T 2xpi_A 490 DMQTAINH----FQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKI 565 (597)
T ss_dssp CHHHHHHH----HHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHH----HHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Confidence 99999999 9999832110 11443 799999999999999999999999999998 89999999999999999
Q ss_pred HHHHHHHHHHHHHHccCCHHHHHHHhh
Q 003035 796 LKAAYDEMTKLLEKAQYSASAFEKRSE 822 (855)
Q Consensus 796 ~~~A~~~~~kal~~~p~~~~a~~~lg~ 822 (855)
+++|++.|+++++++|+++.++..++.
T Consensus 566 ~~~A~~~~~~~l~~~p~~~~~~~~l~~ 592 (597)
T 2xpi_A 566 PGLAITHLHESLAISPNEIMASDLLKR 592 (597)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 999999999999999999999999886
No 5
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-31 Score=305.91 Aligned_cols=402 Identities=12% Similarity=0.025 Sum_probs=323.6
Q ss_pred HHHHHHHHhhcccccchhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhcc--hhhhhhHHH
Q 003035 382 LLYYFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLAR 459 (855)
Q Consensus 382 ~l~~~La~~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~--~~a~~~la~ 459 (855)
..++.+|..++..++ +++|+..|+++++.+|+ ..++..+|.+++..|++++|+..|+++++.+| ..++..+|.
T Consensus 7 ~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 81 (514)
T 2gw1_A 7 LALKDKGNQFFRNKK-YDDAIKYYNWALELKED----PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-HHHHHHHHHHHHhcCcc----HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 357788999999998 99999999999999885 35789999999999999999999999998765 457899999
Q ss_pred HHHHhCChHHHHHHHHhHHHcCCCchHHHHHHhh-------ccCcchHHHHHHHHH------------------------
Q 003035 460 AKYKVGQQYSAYKLINSIISEHKPTGWMYQERSL-------YNLGREKIVDLNYAS------------------------ 508 (855)
Q Consensus 460 ~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~-------~~~~~~A~~~l~~a~------------------------ 508 (855)
++..+|++++|+..+++++...|.+......... .....+++..++++.
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999999999998865332111100 000011111111111
Q ss_pred ----------Hh--------CCCCchhHHHHHHHHHH---hCCHHHHHHHHHHHHc-----c--CC--------CHhHHH
Q 003035 509 ----------EL--------DPTLSFPYKYRAVAKME---EGQIRAAISEIDRIIV-----F--KL--------SVDCLE 552 (855)
Q Consensus 509 ----------~l--------dP~~~~a~~~~a~~~~~---~~~~~~A~~~~~k~l~-----~--~p--------~~~~l~ 552 (855)
.. +|++...++.+|..++. .|++++|+..|++++. . .| ....+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 00 14557778888888886 8999999999999998 5 33 245677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHH
Q 003035 553 LRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQM 632 (855)
Q Consensus 553 lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~ 632 (855)
.+|.++...|++++|+..+++++..+|+ ...... ...+....+++ ..++..+.++
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~------l~~~~~~~~~~------------------~~A~~~~~~~ 296 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIY------MALIMADRNDS------------------TEYYNYFDKA 296 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHH------HHHHHHTSSCC------------------TTGGGHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHH------HHHHHHHCCCH------------------HHHHHHHHHH
Confidence 8899999999999999999999999887 322211 11111111222 2245677888
Q ss_pred HHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHH
Q 003035 633 LINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFF 711 (855)
Q Consensus 633 l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~ 711 (855)
+..+|.+..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++..|++ .+++
T Consensus 297 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 376 (514)
T 2gw1_A 297 LKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPN 376 (514)
T ss_dssp HTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHH
T ss_pred hhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHH
Confidence 888999999999999999999999999999999999999999999999999999999999999999999999988 9999
Q ss_pred HHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--------HHHHHHHHHHHH---cCCHHHHHHHHHHHHhcc--
Q 003035 712 LKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--------QALNNLGSIYVE---CGKLDQAENCYINALDIK-- 778 (855)
Q Consensus 712 ~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--------~a~~~LG~~y~~---~g~~~~A~~~~~kAL~~~-- 778 (855)
.+|.++...|++++|+.. +++++ ...|+ .++.++|.++.. .|++++|+..|+++++..
T Consensus 377 ~la~~~~~~~~~~~A~~~----~~~a~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 447 (514)
T 2gw1_A 377 FFAEILTDKNDFDKALKQ----YDLAI-----ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR 447 (514)
T ss_dssp HHHHHHHHTTCHHHHHHH----HHHHH-----HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHCCCHHHHHHH----HHHHH-----HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc
Confidence 999999999999999999 99888 55555 289999999999 999999999999999988
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh
Q 003035 779 HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE 822 (855)
Q Consensus 779 ~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~ 822 (855)
++.++..+|.++...|++++|+..|+++++++|+++.++..+..
T Consensus 448 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 491 (514)
T 2gw1_A 448 SEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITF 491 (514)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 88899999999999999999999999999999999988887755
No 6
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=7.6e-31 Score=305.24 Aligned_cols=433 Identities=12% Similarity=0.030 Sum_probs=324.9
Q ss_pred HHHHHHHHHhhcccccchhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhcc--hhhhhhHH
Q 003035 381 FLLYYFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLA 458 (855)
Q Consensus 381 f~l~~~La~~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~--~~a~~~la 458 (855)
...++.+|..+...++ +++|+..|+++++.+|++. .++..+|.+|..+|++++|++.|+++++.+| ..++..+|
T Consensus 25 a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 100 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKN-FNEAIKYYQYAIELDPNEP---VFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHTTC-CC-CHHHHHHHHHHCTTCH---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc-HHHHHHHHHHHHhhCCCCc---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 3456778888888887 8888888888888877653 5777888888888888888888888887654 45677888
Q ss_pred HHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHh-hccCcchHHHHHHHHHHhCCCCch---hHHHHHHHHHHhCCHHHH
Q 003035 459 RAKYKVGQQYSAYKLINSIISEHKPTGWMYQERS-LYNLGREKIVDLNYASELDPTLSF---PYKYRAVAKMEEGQIRAA 534 (855)
Q Consensus 459 ~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~-~~~~~~~A~~~l~~a~~ldP~~~~---a~~~~a~~~~~~~~~~~A 534 (855)
.++..+|++++|+..++ .+...|+....+.... ..+...+|+..+++++..+|+... +.......+....+.+.+
T Consensus 101 ~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 88888888888888885 6666665433221110 011225677777777776554432 222334456667777777
Q ss_pred HHHHHHHHccCCCHhHH-HHH--------HHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchh-HHHHHHHHHhhcc
Q 003035 535 ISEIDRIIVFKLSVDCL-ELR--------AWLFIAADDYESALRDTLALLALESNYMMFHGRVSGD-HLVKLLNHHVRSW 604 (855)
Q Consensus 535 ~~~~~k~l~~~p~~~~l-~lr--------a~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~-~l~~ll~~~~~~~ 604 (855)
+..+.+.....+....+ ... +.+....|++++|+..+++++..+|++.......... .....+....
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~--- 256 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLK--- 256 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhc---
Confidence 76666665555542221 111 3444556799999999999999999975432211110 0011111111
Q ss_pred ChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 003035 605 SPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWIL 684 (855)
Q Consensus 605 ~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~ 684 (855)
.+...++..+.++++.+|. ...++.+|.++...|++++|+..|+++++.+|+++.++..+|.++
T Consensus 257 ---------------~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 320 (537)
T 3fp2_A 257 ---------------NNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMY 320 (537)
T ss_dssp ---------------TCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ---------------ccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 1122356788899999999 999999999999999999999999999999999999999999999
Q ss_pred HHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHc
Q 003035 685 YDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVEC 761 (855)
Q Consensus 685 ~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~ 761 (855)
...|++++|+..|+++++.+|++ .+++.+|.++...|++++|+.. +++++ ...|+ .++.++|.++...
T Consensus 321 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~----~~~~~-----~~~~~~~~~~~~l~~~~~~~ 391 (537)
T 3fp2_A 321 FILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAF----FNETK-----LKFPTLPEVPTFFAEILTDR 391 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHH----HHHHH-----HHCTTCTHHHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHH-----HhCCCChHHHHHHHHHHHHh
Confidence 99999999999999999999999 9999999999999999999999 99999 77777 8999999999999
Q ss_pred CCHHHHHHHHHHHHhcc--------cHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHccCCHHHHHHHhh-
Q 003035 762 GKLDQAENCYINALDIK--------HTRAHQGLARVYYLK----------NELKAAYDEMTKLLEKAQYSASAFEKRSE- 822 (855)
Q Consensus 762 g~~~~A~~~~~kAL~~~--------~~~a~~~lg~~~~~~----------g~~~~A~~~~~kal~~~p~~~~a~~~lg~- 822 (855)
|++++|+..|++++++. ....+..+|.++..+ |++++|+..|+++++.+|+++.++..+|.
T Consensus 392 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 471 (537)
T 3fp2_A 392 GDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQL 471 (537)
T ss_dssp TCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999876 224477889999999 99999999999999999999999999999
Q ss_pred ---cCCHHHHHHHHHHHHhcCCCCccc
Q 003035 823 ---YSDREMAKNDLNMATQLDPLRTYP 846 (855)
Q Consensus 823 ---~g~~eeA~~~~~kAl~l~P~~~~~ 846 (855)
.|++++|+..|+++++++|+....
T Consensus 472 ~~~~g~~~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 472 KLQMEKIDEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 999999999999999999987544
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.2e-30 Score=301.28 Aligned_cols=382 Identities=15% Similarity=0.090 Sum_probs=296.9
Q ss_pred HHHhhchhhHHHHHHHHHhhcccccchhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhcch
Q 003035 372 RLANVGHASFLLYYFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHI 451 (855)
Q Consensus 372 r~~~~~~~~f~l~~~La~~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~~ 451 (855)
+.+..+|. ...++.+|.+++..++ +++|+..++++++.+|++. .++..+|.++..+|++++|+..|+++++..+.
T Consensus 31 ~al~~~p~-~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 105 (514)
T 2gw1_A 31 WALELKED-PVFYSNLSACYVSVGD-LKKVVEMSTKALELKPDYS---KVLLRRASANEGLGKFADAMFDLSVLSLNGDF 105 (514)
T ss_dssp HHHHHCCC-HHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCSCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSC
T ss_pred HHHhcCcc-HHHHHhHHHHHHHHhh-HHHHHHHHHHHhccChHHH---HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 44455664 4568889999999999 9999999999999988864 58899999999999999999999999987643
Q ss_pred h--hhhhHHHHHHHhCChHHHHHHH---HhH-------------------------------HHc-----------CCCc
Q 003035 452 Y--SLAGLARAKYKVGQQYSAYKLI---NSI-------------------------------ISE-----------HKPT 484 (855)
Q Consensus 452 ~--a~~~la~~~~~~g~~~~A~~~l---~~~-------------------------------i~~-----------~p~~ 484 (855)
. ....+............+.+.+ ..+ +.. .|++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (514)
T 2gw1_A 106 NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNE 185 (514)
T ss_dssp CGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcH
Confidence 2 1111111111111111111100 000 000 0233
Q ss_pred hHHHHHHhh-------ccCcchHHHHHHHHHH-----h--C-------CCCchhHHHHHHHHHHhCCHHHHHHHHHHHHc
Q 003035 485 GWMYQERSL-------YNLGREKIVDLNYASE-----L--D-------PTLSFPYKYRAVAKMEEGQIRAAISEIDRIIV 543 (855)
Q Consensus 485 ~~~y~~~~~-------~~~~~~A~~~l~~a~~-----l--d-------P~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~ 543 (855)
.+.+...+. .+..++|+..++++++ + + |.+..++..+|.++...|++++|+..+++++.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 444443332 2456899999999999 6 4 44566889999999999999999999999999
Q ss_pred cCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhccccccc
Q 003035 544 FKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDI 623 (855)
Q Consensus 544 ~~p~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~ 623 (855)
..|+...+..+|.++...|++++|+..+++++..+|++......+ ..+....+++.
T Consensus 266 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------~~~~~~~~~~~------------------ 321 (514)
T 2gw1_A 266 LFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHR------GQMNFILQNYD------------------ 321 (514)
T ss_dssp HCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHH------HHHHHHTTCTT------------------
T ss_pred hCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHH------HHHHHHhCCHH------------------
Confidence 988877778889999999999999999999999999865432111 11111122222
Q ss_pred chHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q 003035 624 GSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI 703 (855)
Q Consensus 624 ~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~ 703 (855)
.++..+.++++.+|.+...+..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.
T Consensus 322 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 322 QAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp HHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCh-H------HHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003035 704 ERTF-E------AFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINA 774 (855)
Q Consensus 704 ~p~~-~------a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kA 774 (855)
.|++ . +++.+|.++..... ..-...++..+++++ ...|+ .++..+|.+|...|++++|++.|+++
T Consensus 402 ~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~A~~~~~~a~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 402 ENKLDGIYVGIAPLVGKATLLTRNPT-VENFIEATNLLEKAS-----KLDPRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHTSSSCSSCSHHHHHHHHHHHTSCC-TTHHHHHHHHHHHHH-----HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhccchHHHHHHHHHHHHHHHhhhhh-cCCHHHHHHHHHHHH-----HhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9887 5 99999999986642 334556788899999 66776 89999999999999999999999999
Q ss_pred Hhcc--cHHHHHHHHH
Q 003035 775 LDIK--HTRAHQGLAR 788 (855)
Q Consensus 775 L~~~--~~~a~~~lg~ 788 (855)
++++ ++.++..+..
T Consensus 476 ~~~~~~~~~~~~~~~~ 491 (514)
T 2gw1_A 476 ADLARTMEEKLQAITF 491 (514)
T ss_dssp HHHCSSHHHHHHHHHH
T ss_pred HHhccccHHHHHHHHH
Confidence 9999 6677666643
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.98 E-value=1e-29 Score=295.66 Aligned_cols=409 Identities=12% Similarity=0.045 Sum_probs=304.8
Q ss_pred HHHhhchhhHHHHHHHHHhhcccccchhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhcch
Q 003035 372 RLANVGHASFLLYYFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHI 451 (855)
Q Consensus 372 r~~~~~~~~f~l~~~La~~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~~ 451 (855)
+.+...|.....++.+|.++...++ +++|+..++++++.+|++. .++..+|.++...|++++|+..|+ ++...+.
T Consensus 50 ~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~ 124 (537)
T 3fp2_A 50 YAIELDPNEPVFYSNISACYISTGD-LEKVIEFTTKALEIKPDHS---KALLRRASANESLGNFTDAMFDLS-VLSLNGD 124 (537)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHTCHHHHHHHHH-HHC----
T ss_pred HHHhhCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCchH---HHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCC
Confidence 5556677777889999999999998 9999999999999988864 588999999999999999999996 7755443
Q ss_pred hhhhhHHHHHHHhCChHHHHHHHHhHHHcCCCch--------HHHHHHhhccCcchHHHHHHHHHHhCCCCchhHHH---
Q 003035 452 YSLAGLARAKYKVGQQYSAYKLINSIISEHKPTG--------WMYQERSLYNLGREKIVDLNYASELDPTLSFPYKY--- 520 (855)
Q Consensus 452 ~a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~--------~~y~~~~~~~~~~~A~~~l~~a~~ldP~~~~a~~~--- 520 (855)
.... ....+...+....|...++.++...|... ......+ ......++..+.+..+.+|........
T Consensus 125 ~~~~-~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 202 (537)
T 3fp2_A 125 FDGA-SIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG-IFDSHLEVSSVNTSSNYDTAYALLSDALQR 202 (537)
T ss_dssp --------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHH-TSCHHHHHHTSCCCCSSCSSHHHHHHHHHH
T ss_pred CChH-HHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHH-hcChHHHHHHHhhccccccHHHHHHHHHHH
Confidence 2211 12234455566788888888887755321 1111111 112223333333333333332111111
Q ss_pred -----HHHHHHHhCCHHHHHHHHHHHHccCCC-H-------hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcc
Q 003035 521 -----RAVAKMEEGQIRAAISEIDRIIVFKLS-V-------DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGR 587 (855)
Q Consensus 521 -----~a~~~~~~~~~~~A~~~~~k~l~~~p~-~-------~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~ 587 (855)
.+......|++++|+..|++++...|+ + .++..+|.++...|++++|+..+++++..+|+ ......
T Consensus 203 ~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 281 (537)
T 3fp2_A 203 LYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIF 281 (537)
T ss_dssp HHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHH
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHH
Confidence 134456677888888888888887775 2 24556678888888888888888888888876 221110
Q ss_pred cchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003035 588 VSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLAR 667 (855)
Q Consensus 588 ~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al 667 (855)
...+ +.. ..+...++..+.++++.+|.++.+++.+|.++...|++++|+..|++++
T Consensus 282 ------l~~~----------------~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 282 ------LALT----------------LAD--KENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp ------HHHH----------------TCC--SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------HHHH----------------HHH--hcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 1101 100 1112235667778888888889999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCC
Q 003035 668 NHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR 746 (855)
Q Consensus 668 ~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~ 746 (855)
+.+|+++.++..+|.++...|++++|+..++++++.+|++ .+++.+|.++...|++++|+.. |++++ ...
T Consensus 338 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~----~~~a~-----~~~ 408 (537)
T 3fp2_A 338 SLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQ----YDIAK-----RLE 408 (537)
T ss_dssp HHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHH----HHHHH-----HHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHH----HHHHH-----HcC
Confidence 9999999999999999999999999999999999999999 9999999999999999999999 99999 555
Q ss_pred HH--------HHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003035 747 KG--------QALNNLGSIYVEC----------GKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKL 806 (855)
Q Consensus 747 p~--------~a~~~LG~~y~~~----------g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~ka 806 (855)
|. ..+..+|.++... |++++|+..|+++++.+ ++.++.++|.++..+|++++|++.|+++
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 54 4577889999999 99999999999999998 8999999999999999999999999999
Q ss_pred HHHccCCHHHHHHHh
Q 003035 807 LEKAQYSASAFEKRS 821 (855)
Q Consensus 807 l~~~p~~~~a~~~lg 821 (855)
++++|++........
T Consensus 489 l~~~~~~~~~~~~~~ 503 (537)
T 3fp2_A 489 AILARTMDEKLQATT 503 (537)
T ss_dssp HHHC--CHHHHHHHH
T ss_pred HHhCCCcHHHHHHHh
Confidence 999999988765443
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.97 E-value=3.6e-29 Score=284.60 Aligned_cols=346 Identities=15% Similarity=0.133 Sum_probs=281.9
Q ss_pred hhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhcc--hhhhhhHHHHHHHhCChHHHHHHHHh
Q 003035 399 NTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLINS 476 (855)
Q Consensus 399 ~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~--~~a~~~la~~~~~~g~~~~A~~~l~~ 476 (855)
..+...+.+++..+|++ ..++..+|..++..|++++|+..|+++++..+ ..++..+|.++...|++++|+..
T Consensus 9 ~~~~~~~~~~~~~~p~~---~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~--- 82 (450)
T 2y4t_A 9 SGVDLGTENLYFQSMAD---VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPD--- 82 (450)
T ss_dssp --------------CHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH---
T ss_pred ccccccccccccccHHH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHH---
Confidence 34556667777777765 45788999999999999999999999998654 46788888999888887666554
Q ss_pred HHHcCCCchHHHHHHhhccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCCCH----hHHH
Q 003035 477 IISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV----DCLE 552 (855)
Q Consensus 477 ~i~~~p~~~~~y~~~~~~~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~~----~~l~ 552 (855)
++++++++|++..++..+|.+|...|++++|+..|++++...|+. ..+.
T Consensus 83 ---------------------------~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 135 (450)
T 2y4t_A 83 ---------------------------LTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQS 135 (450)
T ss_dssp ---------------------------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred ---------------------------HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHH
Confidence 445555667777778888999999999999999999999988864 3333
Q ss_pred HH------------HHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccc
Q 003035 553 LR------------AWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSV 620 (855)
Q Consensus 553 lr------------a~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~ 620 (855)
.+ |.++...|++++|+..+++++..
T Consensus 136 ~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------------------------------------------- 172 (450)
T 2y4t_A 136 QLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV------------------------------------------- 172 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------------------------------
Confidence 22 44566666666666666655544
Q ss_pred cccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 003035 621 DDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKS 700 (855)
Q Consensus 621 ~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~ka 700 (855)
+|.+..+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++
T Consensus 173 ---------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 173 ---------------CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp ---------------CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---------------CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45555667788999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCh-HHHHHH------------HHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH------HHHHHHHHHHHHc
Q 003035 701 ISIERTF-EAFFLK------------AYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG------QALNNLGSIYVEC 761 (855)
Q Consensus 701 l~~~p~~-~a~~~l------------g~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~------~a~~~LG~~y~~~ 761 (855)
++.+|++ .++..+ |.++...|++++|+.. |++++ ...|+ .++.++|.++...
T Consensus 238 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~----~~~~l-----~~~p~~~~~~~~~~~~l~~~~~~~ 308 (450)
T 2y4t_A 238 LKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSK----YESVM-----KTEPSIAEYTVRSKERICHCFSKD 308 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH----HHHHH-----HHCCSSHHHHHHHHHHHHHHHHTT
T ss_pred HHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH----HHHHH-----hcCCcchHHHHHHHHHHHHHHHHC
Confidence 9999998 666555 9999999999999999 99999 44443 5899999999999
Q ss_pred CCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHh------------h----c
Q 003035 762 GKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS------------E----Y 823 (855)
Q Consensus 762 g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg------------~----~ 823 (855)
|++++|+..|+++++++ ++.++..+|.++...|++++|+..|+++++++|+++.++..++ . .
T Consensus 309 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~l 388 (450)
T 2y4t_A 309 EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKIL 388 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGS
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHh
Confidence 99999999999999988 8999999999999999999999999999999999999999999 2 3
Q ss_pred C-----CHHHHHHHHHH-HHhcCCCCc
Q 003035 824 S-----DREMAKNDLNM-ATQLDPLRT 844 (855)
Q Consensus 824 g-----~~eeA~~~~~k-Al~l~P~~~ 844 (855)
| +.+++++.|++ +++.+|++.
T Consensus 389 g~~~~~~~~~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 389 GVKRNAKKQEIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp CSSTTCCTTHHHHHHHHHHHHSCGGGC
T ss_pred CCCccCCHHHHHHHHHHHHHHhCCCCC
Confidence 4 67888999986 999999875
No 10
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.97 E-value=1.3e-27 Score=261.25 Aligned_cols=309 Identities=15% Similarity=0.142 Sum_probs=224.7
Q ss_pred HHHHHhhhhHhhhhcHHHHHHHHHHHHHhcc--hhhhhhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHhhccCc
Q 003035 420 LALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLG 497 (855)
Q Consensus 420 ~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~--~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~~~~~ 497 (855)
.++..+|..++..|+|++|+..|+++++..+ ..++..+|.++...|++++|+..+
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~----------------------- 60 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDL----------------------- 60 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHH-----------------------
Confidence 4677888888888999999888888887643 356777777777777766555443
Q ss_pred chHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCC---C-HhHHHHH------------HHHHHHc
Q 003035 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL---S-VDCLELR------------AWLFIAA 561 (855)
Q Consensus 498 ~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p---~-~~~l~lr------------a~~y~~~ 561 (855)
+++++++|++..++..+|.++...|++++|+..|++++...| + ...+... |.++...
T Consensus 61 -------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 133 (359)
T 3ieg_A 61 -------TKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDG 133 (359)
T ss_dssp -------HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -------HHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444455566666677777888888888888888888888777 3 2333333 4556666
Q ss_pred CCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChH
Q 003035 562 DDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSF 641 (855)
Q Consensus 562 gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~ 641 (855)
|++++|+..+++++..+ |.++.
T Consensus 134 ~~~~~A~~~~~~~~~~~----------------------------------------------------------~~~~~ 155 (359)
T 3ieg_A 134 ADYTAAITFLDKILEVC----------------------------------------------------------VWDAE 155 (359)
T ss_dssp TCHHHHHHHHHHHHHHC----------------------------------------------------------TTCHH
T ss_pred cCHHHHHHHHHHHHHhC----------------------------------------------------------CCchH
Confidence 66666666555555443 44445
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHH---------
Q 003035 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFF--------- 711 (855)
Q Consensus 642 ~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~--------- 711 (855)
++..+|.++...|++++|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++..|++ .++.
T Consensus 156 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 156 LRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHH
Confidence 566778888888888888888888888888888888888888888888888888888888888887 4433
Q ss_pred ---HHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHH
Q 003035 712 ---LKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG---QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAH 783 (855)
Q Consensus 712 ---~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~---~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~ 783 (855)
.+|.++...|++++|+.. ++++++...+ .+. .++..+|.++...|++++|++.|+++++.+ ++.++
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~----~~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 309 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSK----YESVMKTEPS--VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNAL 309 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHH----HHHHHHHCCS--SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHH----HHHHHhcCCC--chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHH
Confidence 347777777888877777 7777732211 111 456677777777788888888888777776 77777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh
Q 003035 784 QGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE 822 (855)
Q Consensus 784 ~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~ 822 (855)
..+|.++...|++++|+..|+++++++|+++.++..++.
T Consensus 310 ~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 348 (359)
T 3ieg_A 310 KDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEK 348 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 777888777788888888888888777777777766655
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.97 E-value=1.4e-27 Score=261.08 Aligned_cols=313 Identities=16% Similarity=0.136 Sum_probs=269.7
Q ss_pred hhhhhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHhhccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCH
Q 003035 452 YSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQI 531 (855)
Q Consensus 452 ~a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~~~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~ 531 (855)
..+..+|..+...|++++|+..+ +++++.+|++..+++.+|.++...|++
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~------------------------------~~~l~~~p~~~~~~~~~a~~~~~~~~~ 53 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQF------------------------------HAAVDGDPDNYIAYYRRATVFLAMGKS 53 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH------------------------------HHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH------------------------------HHHHhhCcccHHHHHHHHHHHHHccCH
Confidence 45677788888888876666554 455556677777888899999999999
Q ss_pred HHHHHHHHHHHccCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---chhhhhcccchhHHHHHHHHHhhccChh
Q 003035 532 RAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALES---NYMMFHGRVSGDHLVKLLNHHVRSWSPA 607 (855)
Q Consensus 532 ~~A~~~~~k~l~~~p-~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P---~~~~~~~~~~~~~l~~ll~~~~~~~~~a 607 (855)
++|+..+++++...| ....+..+|.++...|++++|+..+++++..+| ++......+
T Consensus 54 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l------------------- 114 (359)
T 3ieg_A 54 KAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQL------------------- 114 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHH-------------------
Confidence 999999999999999 578888999999999999999999999999999 543211100
Q ss_pred hhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHC
Q 003035 608 DCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDT 687 (855)
Q Consensus 608 ~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~ 687 (855)
..+.. ...++..|.++...|++++|+..|+++++.+|+++.++..+|.++...
T Consensus 115 -------------------~~~~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (359)
T 3ieg_A 115 -------------------VKADE--------MQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKE 167 (359)
T ss_dssp -------------------HHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred -------------------HHHHH--------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHC
Confidence 00000 123456788999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HH------------HH
Q 003035 688 GHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QA------------LN 752 (855)
Q Consensus 688 g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a------------~~ 752 (855)
|++++|+..++++++..|++ .+++.+|.++...|++++|+.. +++++ ...|+ .+ ..
T Consensus 168 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~----~~~a~-----~~~~~~~~~~~~~~~~~~~~~~~ 238 (359)
T 3ieg_A 168 GEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSE----VRECL-----KLDQDHKRCFAHYKQVKKLNKLI 238 (359)
T ss_dssp TCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHH----HHHHH-----HHCTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHH-----hhCccchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 9999999999999999999999 99999 55555 22 23
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcc--cH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh----
Q 003035 753 NLGSIYVECGKLDQAENCYINALDIK--HT----RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE---- 822 (855)
Q Consensus 753 ~LG~~y~~~g~~~~A~~~~~kAL~~~--~~----~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~---- 822 (855)
.+|.++...|++++|++.|+++++.. ++ .++..+|.++...|++++|+..++++++.+|+++.++..+|.
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI 318 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 55999999999999999999999988 44 457789999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcccchh
Q 003035 823 YSDREMAKNDLNMATQLDPLRTYPYRY 849 (855)
Q Consensus 823 ~g~~eeA~~~~~kAl~l~P~~~~~~~~ 849 (855)
.|++++|+..|+++++++|++...+..
T Consensus 319 ~g~~~~A~~~~~~a~~~~p~~~~~~~~ 345 (359)
T 3ieg_A 319 EEMYDEAIQDYEAAQEHNENDQQIREG 345 (359)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCChHHHHH
Confidence 999999999999999999998765543
No 12
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=5.8e-29 Score=285.22 Aligned_cols=373 Identities=11% Similarity=0.029 Sum_probs=265.8
Q ss_pred HHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhc--------c---hhhhhhHHHHHHHhCChHHHHHHHHhHHHcCCCchH
Q 003035 418 RMLALHQLGCVMFEREEYKDACYYFEAAADAG--------H---IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGW 486 (855)
Q Consensus 418 ~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~--------~---~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~ 486 (855)
++..|..||.++..+|++++|+++|++|+++. + ..++..+|.+|..+|++++|...++++++..+....
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 34567889999999999999999999998751 1 134678999999999999999988888765332110
Q ss_pred HHHHHhhccCcchHHHHHHHHHHhCCCCchhHHHHHHHHH--HhCCHHHHHHHHHHHHccCC-CHhHHHHHHHHH---HH
Q 003035 487 MYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKM--EEGQIRAAISEIDRIIVFKL-SVDCLELRAWLF---IA 560 (855)
Q Consensus 487 ~y~~~~~~~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~--~~~~~~~A~~~~~k~l~~~p-~~~~l~lra~~y---~~ 560 (855)
..++..+..+..+|.++. ..+++++|+..|++++.++| +++.+..++.++ ..
T Consensus 130 ----------------------~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~ 187 (472)
T 4g1t_A 130 ----------------------PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDN 187 (472)
T ss_dssp ----------------------SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred ----------------------ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence 012334445555555444 35578888888888888888 466666666553 45
Q ss_pred cCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCCh
Q 003035 561 ADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKS 640 (855)
Q Consensus 561 ~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~ 640 (855)
.+++++|++.+++++.++|++......++ .... .++.... +...+...+.+++..+|.+.
T Consensus 188 ~~~~~~al~~~~~al~l~p~~~~~~~~l~------~~~~------------~~~~~~~--~~~~a~~~~~~al~~~~~~~ 247 (472)
T 4g1t_A 188 WPPSQNAIDPLRQAIRLNPDNQYLKVLLA------LKLH------------KMREEGE--EEGEGEKLVEEALEKAPGVT 247 (472)
T ss_dssp SCCCCCTHHHHHHHHHHCSSCHHHHHHHH------HHHH------------HCC--------CHHHHHHHHHHHHCSSCH
T ss_pred chHHHHHHHHHHHHhhcCCcchHHHHHHH------HHHH------------HHHhhhh--HHHHHHHHHHHHHHhCccHH
Confidence 67778889999999998888654322111 0000 0000000 11124567788889999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHC-------------------CCHHHHHHHHHHHH
Q 003035 641 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDT-------------------GHREEALSRAEKSI 701 (855)
Q Consensus 641 ~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~-------------------g~~~eAl~~~~kal 701 (855)
.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.+|..+ +.+++|+..|++++
T Consensus 248 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 327 (472)
T 4g1t_A 248 DVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKAD 327 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999988653 34788999999999
Q ss_pred hccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH-----HHHHHHHHHH-HHcCCHHHHHHHHHHH
Q 003035 702 SIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG-----QALNNLGSIY-VECGKLDQAENCYINA 774 (855)
Q Consensus 702 ~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~-----~a~~~LG~~y-~~~g~~~~A~~~~~kA 774 (855)
+++|.+ .+++.+|.++...|++++|+.. |++++ ...+. .++.++|.+. ...|++++|+..|+++
T Consensus 328 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~----~~kaL-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~ka 398 (472)
T 4g1t_A 328 EANDNLFRVCSILASLHALADQYEEAEYY----FQKEF-----SKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEG 398 (472)
T ss_dssp HHCTTTCCCHHHHHHHHHHTTCHHHHHHH----HHHHH-----HSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred hcCCchhhhhhhHHHHHHHhccHHHHHHH----HHHHH-----hcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999 9999999999999999999999 99999 44432 5677788654 5689999999999999
Q ss_pred Hhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCCcccch
Q 003035 775 LDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLDPLRTYPYR 848 (855)
Q Consensus 775 L~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~----~g~~eeA~~~~~kAl~l~P~~~~~~~ 848 (855)
+++. +... .+....+...++++++.+|+++.+|..||. .|++++|+++|++|++++|.++.++.
T Consensus 399 l~i~~~~~~~----------~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 399 VKINQKSREK----------EKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp HHSCCCCHHH----------HHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------------
T ss_pred HhcCcccHHH----------HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 9998 3322 122345667788999999999999999999 89999999999999999999887776
Q ss_pred hhh
Q 003035 849 YRA 851 (855)
Q Consensus 849 ~~a 851 (855)
+.|
T Consensus 469 ~~G 471 (472)
T 4g1t_A 469 WNG 471 (472)
T ss_dssp ---
T ss_pred cCC
Confidence 543
No 13
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=7.7e-28 Score=273.56 Aligned_cols=299 Identities=15% Similarity=0.147 Sum_probs=261.5
Q ss_pred chHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003035 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLA 576 (855)
Q Consensus 498 ~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~-~~~l~lra~~y~~~gd~~~A~~~~~~aL~ 576 (855)
++|+..|+++++.+|++..++..+|.++...|++++|+..|++++..+|+ ..++..+|.+|..+|++++|+..|++++.
T Consensus 43 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 122 (450)
T 2y4t_A 43 ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK 122 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44455566666677888888899999999999999999999999999984 77888899999999999999999999999
Q ss_pred cCCchh---hhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHc
Q 003035 577 LESNYM---MFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRL 653 (855)
Q Consensus 577 ~~P~~~---~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~ 653 (855)
.+|++. .....+ ..+. ....++..|..+...
T Consensus 123 ~~~~~~~~~~~~~~l--------------------------------------~~~~--------~~~~~~~~a~~~~~~ 156 (450)
T 2y4t_A 123 SNPSENEEKEAQSQL--------------------------------------IKSD--------EMQRLRSQALNAFGS 156 (450)
T ss_dssp SCCCHHHHHHHHHHH--------------------------------------HHHH--------HHHHHHHHHHHHHHH
T ss_pred cCCCChhhHHHHHHH--------------------------------------HHHH--------HHHHHHHHHHHHHHc
Confidence 999864 211000 0000 011345678889999
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHH
Q 003035 654 NCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQ 732 (855)
Q Consensus 654 g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~ 732 (855)
|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++ .+++.+|.++...|++++|+..
T Consensus 157 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~--- 233 (450)
T 2y4t_A 157 GDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSE--- 233 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHH---
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH---
Confidence 999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHhcCCCCCCCHH--HHHHHH------------HHHHHHcCCHHHHHHHHHHHHhcc--c----HHHHHHHHHHHHH
Q 003035 733 LLEEALRCPSDGLRKG--QALNNL------------GSIYVECGKLDQAENCYINALDIK--H----TRAHQGLARVYYL 792 (855)
Q Consensus 733 lle~al~~~~~~~~p~--~a~~~L------------G~~y~~~g~~~~A~~~~~kAL~~~--~----~~a~~~lg~~~~~ 792 (855)
|++++ ...|+ .++..+ |.++...|++++|+..|++++++. + ..++..+|.++..
T Consensus 234 -~~~~~-----~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~ 307 (450)
T 2y4t_A 234 -VRECL-----KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSK 307 (450)
T ss_dssp -HHHHH-----HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHT
T ss_pred -HHHHH-----HhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Confidence 99999 66665 444444 999999999999999999999988 4 4588999999999
Q ss_pred cCCHHHHHHHHHHHHHHccCCHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCCcccchhhh
Q 003035 793 KNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLDPLRTYPYRYRA 851 (855)
Q Consensus 793 ~g~~~~A~~~~~kal~~~p~~~~a~~~lg~----~g~~eeA~~~~~kAl~l~P~~~~~~~~~a 851 (855)
.|++++|+..++++++++|+++.+|..+|. .|++++|+..|+++++++|++...+...+
T Consensus 308 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 308 DEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 999999999999999999999999999999 99999999999999999999987766554
No 14
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=2.5e-28 Score=279.90 Aligned_cols=382 Identities=13% Similarity=0.042 Sum_probs=273.5
Q ss_pred HHHHHHHhhcccccchhhHHHHHHHHhhchhh------HHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhcc------
Q 003035 383 LYYFLSQVAMEKDRVSNTTVMLLERLGECSTE------RWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH------ 450 (855)
Q Consensus 383 l~~~La~~~~~~~~~~~~a~~~le~~~~~~~~------~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~------ 450 (855)
.|..||.++...|+ +++|++.|+++++..+. .+....++.++|.+|..+|++++|+.+|++++++.+
T Consensus 53 ~yn~Lg~~~~~~G~-~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQ-NEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 57889999999998 99999999999886332 222356788999999999999999999999987621
Q ss_pred ----hhhhhhHHHHH--HHhCChHHHHHHHHhHHHcCCCchHHHHHH-------hhccCcchHHHHHHHHHHhCCCCchh
Q 003035 451 ----IYSLAGLARAK--YKVGQQYSAYKLINSIISEHKPTGWMYQER-------SLYNLGREKIVDLNYASELDPTLSFP 517 (855)
Q Consensus 451 ----~~a~~~la~~~--~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~-------~~~~~~~~A~~~l~~a~~ldP~~~~a 517 (855)
...+..+|.++ ..++++++|++.++++++..|+++.++... +.++..++|++.++++++++|++..+
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~ 211 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYL 211 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHH
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHH
Confidence 22344455444 445678999999999999999997765433 33466689999999999999999999
Q ss_pred HHHHHHHHH----HhCCHHHHHHHHHHHHccCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhH
Q 003035 518 YKYRAVAKM----EEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDH 592 (855)
Q Consensus 518 ~~~~a~~~~----~~~~~~~A~~~~~k~l~~~p-~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~ 592 (855)
+..+|..+. ..+++++|+..+++++..+| ....+..+|.+|...|++++|+..+++++..+|++...+..++..+
T Consensus 212 ~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y 291 (472)
T 4g1t_A 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCY 291 (472)
T ss_dssp HHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 988887654 45788899999999999998 5788888999999999999999999999999999765443332111
Q ss_pred HHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 003035 593 LVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS 672 (855)
Q Consensus 593 l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~ 672 (855)
..... ..... .....+......+.++.|+..|+++++.+|.
T Consensus 292 ~~~~~---------------------------------~~~~~------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 332 (472)
T 4g1t_A 292 RAKVF---------------------------------QVMNL------RENGMYGKRKLLELIGHAVAHLKKADEANDN 332 (472)
T ss_dssp HHHHH---------------------------------HHHHC------------CHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHH---------------------------------HhhhH------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc
Confidence 00000 00000 0011112222344578999999999999999
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh----HHHHHHHHH-HHHCCCCchhHHHHHHHHHHHhcCCCCCCCH
Q 003035 673 EHERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFFLKAYI-LADTNLDPESSTYVIQLLEEALRCPSDGLRK 747 (855)
Q Consensus 673 ~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~----~a~~~lg~~-~~~~g~~~~A~~~~~~lle~al~~~~~~~~p 747 (855)
+..+++.+|.++...|++++|+..|+++++++|+. ..++.+|.. +...|++++|+.. |++++ .+.|
T Consensus 333 ~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~----y~kal-----~i~~ 403 (472)
T 4g1t_A 333 LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHH----FIEGV-----KINQ 403 (472)
T ss_dssp TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH----HHHHH-----HSCC
T ss_pred hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHH----HHHHH-----hcCc
Confidence 99999999999999999999999999999999877 356677754 4578999999999 99999 6666
Q ss_pred H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh
Q 003035 748 G-QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE 822 (855)
Q Consensus 748 ~-~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~ 822 (855)
. ... .+....+.+.++++++.+ ++.+++++|.+|..+|++++|++.|++|+++.|.+|.+...+|.
T Consensus 404 ~~~~~---------~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G~ 472 (472)
T 4g1t_A 404 KSREK---------EKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNGE 472 (472)
T ss_dssp CCHHH---------HHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------------------
T ss_pred ccHHH---------HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCCC
Confidence 5 111 112345567788888888 88999999999999999999999999999999999999988874
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.9e-26 Score=249.69 Aligned_cols=290 Identities=11% Similarity=-0.017 Sum_probs=184.3
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhh
Q 003035 506 YASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMF 584 (855)
Q Consensus 506 ~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p-~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~ 584 (855)
..+...|++...+..+|..+...|++++|+..+++++..+| +...+...+.++..+|++++|+..+++++..+|++...
T Consensus 13 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 92 (330)
T 3hym_B 13 ESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVS 92 (330)
T ss_dssp -------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHH
Confidence 44455677777788888888888888888888888888777 45666677788888888888888888888777765322
Q ss_pred hcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 003035 585 HGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLR 664 (855)
Q Consensus 585 ~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~ 664 (855)
...++ .+....+ .+...++..+.++++.+|.++..++.+|.++...|++++|+..|+
T Consensus 93 ~~~l~------~~~~~~~-----------------~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 149 (330)
T 3hym_B 93 WFAVG------CYYLMVG-----------------HKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYF 149 (330)
T ss_dssp HHHHH------HHHHHSC-----------------SCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHH------HHHHHhh-----------------hhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 11110 0000000 000113444555555566666666666666667777777777777
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCC
Q 003035 665 LARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSD 743 (855)
Q Consensus 665 ~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~ 743 (855)
++++..|++...++.+|.++...|++++|+..++++++.+|++ .+++.+|.++...|++++|+.. ++++++....
T Consensus 150 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~a~~~~~~ 225 (330)
T 3hym_B 150 TAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKW----FLDALEKIKA 225 (330)
T ss_dssp HHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHH----HHHHHHHHTT
T ss_pred HHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHH----HHHHHHHhhh
Confidence 7777666666666667777777777777777777777766666 6666667777777777776666 6666632110
Q ss_pred ---C-CCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHH
Q 003035 744 ---G-LRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSAS 815 (855)
Q Consensus 744 ---~-~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~ 815 (855)
. ..|. .++.++|.++...|++++|+.+|++++++. ++.++.++|.++..+|++++|++.|+++++++|+++.
T Consensus 226 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 305 (330)
T 3hym_B 226 IGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTF 305 (330)
T ss_dssp TSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHH
T ss_pred ccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchH
Confidence 0 0022 566666777777777777777777776666 5666666777777777777777777777766676666
Q ss_pred HHHHHhh
Q 003035 816 AFEKRSE 822 (855)
Q Consensus 816 a~~~lg~ 822 (855)
++..+|.
T Consensus 306 ~~~~l~~ 312 (330)
T 3hym_B 306 SVTMLGH 312 (330)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666665
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.95 E-value=1.1e-24 Score=252.31 Aligned_cols=383 Identities=13% Similarity=0.037 Sum_probs=268.7
Q ss_pred HHHHHHhhcc----cccchhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhh----hhcHHHHHHHHHHHHHhcchhhhh
Q 003035 384 YYFLSQVAME----KDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFE----REEYKDACYYFEAAADAGHIYSLA 455 (855)
Q Consensus 384 ~~~La~~~~~----~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~----~g~~~eA~~~~~~Al~~~~~~a~~ 455 (855)
.+.|+.++.. .++ .++|+..|+++.+... ..+++.||.+|.. .+++++|+++|++|++.++..+..
T Consensus 42 ~~~lg~~y~~g~~~~~~-~~~A~~~~~~a~~~~~-----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~ 115 (490)
T 2xm6_A 42 QLELGYRYFQGNETTKD-LTQAMDWFRRAAEQGY-----TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQ 115 (490)
T ss_dssp HHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHcCCCCCcC-HHHHHHHHHHHHHCCC-----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3444544444 344 5566666666655411 2355566666666 666666666666666666666666
Q ss_pred hHHHHHHH----hCChHHHHHHHHhHHHcCCCchHHHHHHhhccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHH----
Q 003035 456 GLARAKYK----VGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKME---- 527 (855)
Q Consensus 456 ~la~~~~~----~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~~~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~---- 527 (855)
.+|.+|.. .++.++| +..|+++.+. +++.+++.+|.+|..
T Consensus 116 ~Lg~~y~~g~g~~~~~~~A------------------------------~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~ 163 (490)
T 2xm6_A 116 NLGVMYHEGNGVKVDKAES------------------------------VKWFRLAAEQ--GRDSGQQSMGDAYFEGDGV 163 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHH------------------------------HHHHHHHHHT--TCHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHcCCCCCCCHHHH------------------------------HHHHHHHHHC--CCHHHHHHHHHHHHcCCCC
Confidence 66666555 4444444 4445555443 456667777777776
Q ss_pred hCCHHHHHHHHHHHHccCCCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhc
Q 003035 528 EGQIRAAISEIDRIIVFKLSVDCLELRAWLFIA----ADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRS 603 (855)
Q Consensus 528 ~~~~~~A~~~~~k~l~~~p~~~~l~lra~~y~~----~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~ 603 (855)
.+++++|+..|+++++.. ++.+...+|.+|.. .+++++|+..|++++...+... . .....+...
T Consensus 164 ~~d~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a--~------~~lg~~y~~--- 231 (490)
T 2xm6_A 164 TRDYVMAREWYSKAAEQG-NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELG--Q------LHLADMYYF--- 231 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH--H------HHHHHHHHH---
T ss_pred CCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHH--H------HHHHHHHHc---
Confidence 677777777777777652 56666777777777 7777788777777776432211 0 001101000
Q ss_pred cChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 003035 604 WSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLR----LNCQKAAMRCLRLARNHSSSEHERLVY 679 (855)
Q Consensus 604 ~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~----~g~~~~A~~~l~~al~~~p~~~~~~~~ 679 (855)
......+...++..+.++++. .++.+++.+|.++.. .+++++|+.+|+++.+. +++++++.
T Consensus 232 -----------g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~ 296 (490)
T 2xm6_A 232 -----------GIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYY 296 (490)
T ss_dssp -----------TSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHH
T ss_pred -----------CCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHH
Confidence 000011112234445555543 456778888998888 89999999999999876 57889999
Q ss_pred HHHHHHHC-----CCHHHHHHHHHHHHhccCChHHHHHHHHHHHHCC---CCchhHHHHHHHHHHHhcCCCCCCCHHHHH
Q 003035 680 EGWILYDT-----GHREEALSRAEKSISIERTFEAFFLKAYILADTN---LDPESSTYVIQLLEEALRCPSDGLRKGQAL 751 (855)
Q Consensus 680 lg~~~~~~-----g~~~eAl~~~~kal~~~p~~~a~~~lg~~~~~~g---~~~~A~~~~~~lle~al~~~~~~~~p~~a~ 751 (855)
+|.++... +++++|+..|+++++..+ ..+++.+|.+|...| ++++|+.. |++++ +.....++
T Consensus 297 Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~-~~a~~~lg~~y~~~g~~~~~~~A~~~----~~~a~-----~~~~~~a~ 366 (490)
T 2xm6_A 297 LAHLYDKGAEGVAKNREQAISWYTKSAEQGD-ATAQANLGAIYFRLGSEEEHKKAVEW----FRKAA-----AKGEKAAQ 366 (490)
T ss_dssp HHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHSCCHHHHHHHHHH----HHHHH-----HTTCHHHH
T ss_pred HHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCcccHHHHHHH----HHHHH-----HCCCHHHH
Confidence 99999998 999999999999998632 289999999999977 77888888 99999 55444899
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHcc---CCHHHHHHH
Q 003035 752 NNLGSIYVE----CGKLDQAENCYINALDIKHTRAHQGLARVYYL----KNELKAAYDEMTKLLEKAQ---YSASAFEKR 820 (855)
Q Consensus 752 ~~LG~~y~~----~g~~~~A~~~~~kAL~~~~~~a~~~lg~~~~~----~g~~~~A~~~~~kal~~~p---~~~~a~~~l 820 (855)
++||.+|.. .+++++|+.+|+++++..++.+++++|.+|.. .+++++|+.+|+++++..| +++.+..++
T Consensus 367 ~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l 446 (490)
T 2xm6_A 367 FNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITE 446 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHH
Confidence 999999999 89999999999999998899999999999999 8999999999999999994 489999999
Q ss_pred hh--cCCHHHHHHHHHHHHhcCC
Q 003035 821 SE--YSDREMAKNDLNMATQLDP 841 (855)
Q Consensus 821 g~--~g~~eeA~~~~~kAl~l~P 841 (855)
|. ..+.++|....++.++..|
T Consensus 447 ~~~~~~~~~~a~~~a~~~~~~~~ 469 (490)
T 2xm6_A 447 KKLTAKQLQQAELLSQQYIEKYA 469 (490)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHC
T ss_pred HhcCHhHHHHHHHHHHHHHHHHH
Confidence 99 3344554444444444333
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.95 E-value=2.1e-24 Score=250.01 Aligned_cols=366 Identities=14% Similarity=0.037 Sum_probs=299.7
Q ss_pred hHHHHHHHHhhchhhHHHHHHHHHHhhhhHhh----hhcHHHHHHHHHHHHHhcchhhhhhHHHHHHH----hCChHHHH
Q 003035 400 TTVMLLERLGECSTERWQRMLALHQLGCVMFE----REEYKDACYYFEAAADAGHIYSLAGLARAKYK----VGQQYSAY 471 (855)
Q Consensus 400 ~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~----~g~~~eA~~~~~~Al~~~~~~a~~~la~~~~~----~g~~~~A~ 471 (855)
.++..++++.+.. + ..+++.||.+|.. .+++++|+.+|++|++.++..+++.||.+|.. .++.++|+
T Consensus 25 ~~~~~~~~~a~~g--~---~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 25 VNLEQLKQKAESG--E---AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CCHHHHHHHHHTT--C---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHHCC--C---HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 3456666655431 1 3578899999999 99999999999999999999999999999988 77776666
Q ss_pred HHHHhHHHcCCCchHHHHHHhhccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHH----hCCHHHHHHHHHHHHccCCC
Q 003035 472 KLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKME----EGQIRAAISEIDRIIVFKLS 547 (855)
Q Consensus 472 ~~l~~~i~~~p~~~~~y~~~~~~~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~----~~~~~~A~~~~~k~l~~~p~ 547 (855)
..+++++ + ++++.+++.+|.+|.. .+++++|+..|+++.... +
T Consensus 100 ~~~~~a~------------------------------~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~ 146 (490)
T 2xm6_A 100 IWYKKAA------------------------------L--KGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG-R 146 (490)
T ss_dssp HHHHHHH------------------------------H--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-C
T ss_pred HHHHHHH------------------------------H--CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-C
Confidence 6555543 3 2456677889999998 899999999999998754 5
Q ss_pred HhHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhccccccc
Q 003035 548 VDCLELRAWLFIA----ADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDI 623 (855)
Q Consensus 548 ~~~l~lra~~y~~----~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~ 623 (855)
+.+...+|.+|.. .+++++|+..|++++... +.... .....+.... .....+..
T Consensus 147 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~--~~~a~------~~Lg~~y~~g--------------~g~~~~~~ 204 (490)
T 2xm6_A 147 DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG--NVWSC------NQLGYMYSRG--------------LGVERNDA 204 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH------HHHHHHHHHT--------------SSSCCCHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHH------HHHHHHHhcC--------------CCCCcCHH
Confidence 7788888999998 899999999999999753 22111 1111111110 00011223
Q ss_pred chHHHHHHHHHcCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----CCCHHHHHH
Q 003035 624 GSLAVINQMLINDPGKSFLRFRQSLLLLR----LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYD----TGHREEALS 695 (855)
Q Consensus 624 ~al~~~~~~l~~~p~~~~~~~~~a~~l~~----~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~----~g~~~eAl~ 695 (855)
.++..+.++++. .++.+++.+|.++.. .+++++|+..|+++.+. .++.+++.+|.++.. .+++++|+.
T Consensus 205 ~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~ 280 (490)
T 2xm6_A 205 ISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALE 280 (490)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHH
T ss_pred HHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHH
Confidence 355666777664 567889999999997 89999999999999886 568899999999999 999999999
Q ss_pred HHHHHHhccCCh-HHHHHHHHHHHHC-----CCCchhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcC---CHHH
Q 003035 696 RAEKSISIERTF-EAFFLKAYILADT-----NLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECG---KLDQ 766 (855)
Q Consensus 696 ~~~kal~~~p~~-~a~~~lg~~~~~~-----g~~~~A~~~~~~lle~al~~~~~~~~p~~a~~~LG~~y~~~g---~~~~ 766 (855)
.|+++++. .+ .+++.+|.+|... +++++|+.. |++++ +..+..+++++|.+|...| ++++
T Consensus 281 ~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~----~~~a~-----~~~~~~a~~~lg~~y~~~g~~~~~~~ 349 (490)
T 2xm6_A 281 WYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISW----YTKSA-----EQGDATAQANLGAIYFRLGSEEEHKK 349 (490)
T ss_dssp HHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHH----HHHHH-----HTTCHHHHHHHHHHHHHSCCHHHHHH
T ss_pred HHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHH----HHHHH-----hcCCHHHHHHHHHHHHhCCCcccHHH
Confidence 99999876 44 8999999999998 999999999 99999 6666689999999999977 8999
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHccCCHHHHHHHhh--------cCCHHHHHHHHH
Q 003035 767 AENCYINALDIKHTRAHQGLARVYYL----KNELKAAYDEMTKLLEKAQYSASAFEKRSE--------YSDREMAKNDLN 834 (855)
Q Consensus 767 A~~~~~kAL~~~~~~a~~~lg~~~~~----~g~~~~A~~~~~kal~~~p~~~~a~~~lg~--------~g~~eeA~~~~~ 834 (855)
|+++|+++++..++.+++++|.+|.. .+++++|+.+|+++++. .++.+++++|. .+++++|+.+|+
T Consensus 350 A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 427 (490)
T 2xm6_A 350 AVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFD 427 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99999999999899999999999999 89999999999999985 47999999999 489999999999
Q ss_pred HHHhcCCC
Q 003035 835 MATQLDPL 842 (855)
Q Consensus 835 kAl~l~P~ 842 (855)
+|++.+|+
T Consensus 428 ~A~~~~~~ 435 (490)
T 2xm6_A 428 TASTNDMN 435 (490)
T ss_dssp HHHHHHCC
T ss_pred HHHHCCCC
Confidence 99999954
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.94 E-value=2.4e-25 Score=240.94 Aligned_cols=283 Identities=13% Similarity=0.076 Sum_probs=217.8
Q ss_pred chhhhhhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHh----hccCcchHHHHHHHHHHhCCCCchhHHHHHHHH
Q 003035 450 HIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERS----LYNLGREKIVDLNYASELDPTLSFPYKYRAVAK 525 (855)
Q Consensus 450 ~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~----~~~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~ 525 (855)
+...+..+|..++..|++++|+..++++++..|.+...+...+ ..+..++|+..++++++.+|++..++..+|.++
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYY 100 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 4456788888999999998888888888888777654332211 124456777777777777777777777777777
Q ss_pred HHhC-CHHHHHHHHHHHHccCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhc
Q 003035 526 MEEG-QIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRS 603 (855)
Q Consensus 526 ~~~~-~~~~A~~~~~k~l~~~p~-~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~ 603 (855)
...| ++++|+..+++++..+|+ ...+..+|.++...|++++|+..+++++...
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------------------- 155 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM------------------------- 155 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-------------------------
T ss_pred HHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-------------------------
Confidence 7777 777777777777777773 5666677777777777777777777666544
Q ss_pred cChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 003035 604 WSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWI 683 (855)
Q Consensus 604 ~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~ 683 (855)
|.+...++.+|.++...|++++|+..|+++++.+|+++.+++.+|.+
T Consensus 156 ---------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 202 (330)
T 3hym_B 156 ---------------------------------KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVV 202 (330)
T ss_dssp ---------------------------------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred ---------------------------------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 44445678899999999999999999999999999999999999999
Q ss_pred HHHCCCHHHHHHHHHHHHhccCCh-HH-------HHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHH
Q 003035 684 LYDTGHREEALSRAEKSISIERTF-EA-------FFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNN 753 (855)
Q Consensus 684 ~~~~g~~~eAl~~~~kal~~~p~~-~a-------~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~ 753 (855)
+...|++++|+..++++++..|.. .. ............ ..-...++..+++++ ...|+ .++.+
T Consensus 203 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a~-----~~~~~~~~~~~~ 275 (330)
T 3hym_B 203 AFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK--LKKYAEALDYHRQAL-----VLIPQNASTYSA 275 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH--TTCHHHHHHHHHHHH-----HHSTTCSHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHH-----hhCccchHHHHH
Confidence 999999999999999999998765 11 112222222211 122345678889999 66776 89999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHH-HcCCHH
Q 003035 754 LGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYY-LKNELK 797 (855)
Q Consensus 754 LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~-~~g~~~ 797 (855)
+|.++...|++++|+++|+++++++ ++.++..+|.++. ..|+.+
T Consensus 276 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 276 IGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999999999999999999998 8999999999984 556543
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.94 E-value=3.6e-26 Score=252.26 Aligned_cols=274 Identities=11% Similarity=0.057 Sum_probs=232.8
Q ss_pred chHHH-HHHHHHHhCCCCc----hhHHHHHHHHHHhCCHHHHHHHHHHHHccCC-CHhHHHHHHHHHHHcCCHHHHHHHH
Q 003035 498 REKIV-DLNYASELDPTLS----FPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDT 571 (855)
Q Consensus 498 ~~A~~-~l~~a~~ldP~~~----~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p-~~~~l~lra~~y~~~gd~~~A~~~~ 571 (855)
++|+. .+++++++.|+++ ..++.+|.++...|++++|+..|++++...| +...+..+|.++...|++++|+..+
T Consensus 42 ~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 121 (368)
T 1fch_A 42 DDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISAL 121 (368)
T ss_dssp ----CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 55666 6777777777663 4588899999999999999999999999888 5778888899999999999999988
Q ss_pred HHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHH
Q 003035 572 LALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLL 651 (855)
Q Consensus 572 ~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~ 651 (855)
++++.++|+ ++.+++.+|.++.
T Consensus 122 ~~al~~~~~----------------------------------------------------------~~~~~~~l~~~~~ 143 (368)
T 1fch_A 122 RRCLELKPD----------------------------------------------------------NQTALMALAVSFT 143 (368)
T ss_dssp HHHHHHCTT----------------------------------------------------------CHHHHHHHHHHHH
T ss_pred HHHHhcCCC----------------------------------------------------------CHHHHHHHHHHHH
Confidence 888876554 3335566788888
Q ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHH----------------HHHHHHHHCCCHHHHHHHHHHHHhccCC--h-HHHHH
Q 003035 652 RLNCQKAAMRCLRLARNHSSSEHERLV----------------YEGWILYDTGHREEALSRAEKSISIERT--F-EAFFL 712 (855)
Q Consensus 652 ~~g~~~~A~~~l~~al~~~p~~~~~~~----------------~lg~~~~~~g~~~eAl~~~~kal~~~p~--~-~a~~~ 712 (855)
..|++++|+..|+++++.+|++...+. .+|.++ ..|++++|+..|+++++.+|+ . .+++.
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 899999999999999999998877664 466666 899999999999999999998 6 88999
Q ss_pred HHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHH
Q 003035 713 KAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLAR 788 (855)
Q Consensus 713 lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~ 788 (855)
+|.++...|++++|+.. |++++ ...|+ .+++++|.++...|++++|+..|+++++++ ++.++.++|.
T Consensus 223 l~~~~~~~g~~~~A~~~----~~~al-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~ 293 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDC----FTAAL-----SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGI 293 (368)
T ss_dssp HHHHHHHTTCHHHHHHH----HHHHH-----HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHH----HHHHH-----HhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 99999999999999999 99999 66676 889999999999999999999999999988 7889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHccCC-----------HHHHHHHhh----cCCHHHHHHHHHHHHhc
Q 003035 789 VYYLKNELKAAYDEMTKLLEKAQYS-----------ASAFEKRSE----YSDREMAKNDLNMATQL 839 (855)
Q Consensus 789 ~~~~~g~~~~A~~~~~kal~~~p~~-----------~~a~~~lg~----~g~~eeA~~~~~kAl~l 839 (855)
++..+|++++|+..|++++++.|++ +.+|..+|. .|++++|...++++++.
T Consensus 294 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 294 SCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 9999999999999999999999988 889999998 89999999888877764
No 20
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.94 E-value=1.3e-26 Score=245.39 Aligned_cols=188 Identities=13% Similarity=0.178 Sum_probs=146.6
Q ss_pred hhcCCCCCCcEEEEEcCeEEEeeehhhhcCCHHHHHhhcCCCc--cCCCCeeEecCCCCCHHHHHHHHHHhccCCCCCCC
Q 003035 210 VCLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFV--ESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFC 287 (855)
Q Consensus 210 ~~~~~~~~~~V~f~v~~~~~~aHr~vLaa~S~~F~~mf~~~~~--E~~~~~I~l~~~~is~~~~~~ll~y~YTg~l~~~~ 287 (855)
+...++..+||+|+|||++|+|||.||+++|+||++||++++. |+...+|++ +++++++|+.+++|+|||++. ++
T Consensus 24 ~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l--~~v~~~~f~~ll~~~Yt~~~~-i~ 100 (256)
T 3hve_A 24 SFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIEL--EGISVMVMREILDYIFSGQIR-LN 100 (256)
T ss_dssp TCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEEC--SSCCHHHHHHHHHHHHHSCCC-CC
T ss_pred HHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEe--CCCCHHHHHHHHhhccCCCCc-cc
Confidence 3456667778999999999999999999999999999999988 667789999 999999999999999999999 99
Q ss_pred HHHHHHHHHHhchhChHHHHHHHHHHHHhhcCChhhHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhcCChhHHhhh---
Q 003035 288 PGIVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKIF--- 364 (855)
Q Consensus 288 ~~~~~~ll~~A~~~~~~~Lk~~C~~~l~~~l~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~v~~~~~f~~ll--- 364 (855)
.+++.+++.+|++|+++.|+..|+++|.+.++ ++||+.++.+|..|++..|.+.|.+||.+||.++.++++|.+|-
T Consensus 101 ~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~-~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~~~ 179 (256)
T 3hve_A 101 EDTIQDVVQAADLLLLTDLKTLCCEFLEGCIA-AENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSSTEEFLELSPQK 179 (256)
T ss_dssp -CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCC-SSTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHHSSCHHH
T ss_pred HhHHHHHHHHHHHHChHHHHHHHHHHHHhhCC-HhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhCCcchhcCCHHH
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999887652
Q ss_pred -----cCchhHHHHHhhchhhHHHHHHHHHhhcccccchhhHHHHHH
Q 003035 365 -----CSSEATERLANVGHASFLLYYFLSQVAMEKDRVSNTTVMLLE 406 (855)
Q Consensus 365 -----~~~~~~~r~~~~~~~~f~l~~~La~~~~~~~~~~~~a~~~le 406 (855)
.+++. .|.++..++...+.++..+...|......+++
T Consensus 180 l~~lL~~d~L-----~v~~E~~v~~av~~W~~~~~~~R~~~~~~ll~ 221 (256)
T 3hve_A 180 LKEVISLEKL-----NVGNERYVFEAVIRWIAHDTEIRKVHMKDVMS 221 (256)
T ss_dssp HHHHHHCC------------CTTHHHHTTTCCC--CCSTTTHHHHHH
T ss_pred HHHHHccCCC-----CCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 23322 24555556666666665544433444444443
No 21
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.94 E-value=1.2e-26 Score=230.46 Aligned_cols=146 Identities=18% Similarity=0.244 Sum_probs=133.4
Q ss_pred hhcCCCCCCcEEEEEcCeEEEeeehhhhcCCHHHHHhhcCCCccCCCCeeEecCCCCCHHHHHHHHHHhccCCCCCCCHH
Q 003035 210 VCLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPG 289 (855)
Q Consensus 210 ~~~~~~~~~~V~f~v~~~~~~aHr~vLaa~S~~F~~mf~~~~~E~~~~~I~l~~~~is~~~~~~ll~y~YTg~l~~~~~~ 289 (855)
...+++..+||+|+|+|++|+|||.||+++|+||++||.++|.|+...+|.| +++++++|+.+|+|+|||.+. ++.+
T Consensus 27 ~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l--~~~~~~~f~~~l~~~Yt~~~~-~~~~ 103 (172)
T 3htm_A 27 GLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEI--NDVEPEVFKEMMCFIYTGKAP-NLDK 103 (172)
T ss_dssp HHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEE--CSSCHHHHHHHHHHHHHSCCT-TGGG
T ss_pred HHHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEe--cCCCHHHHHHHHHHHhCCCCC-CcHH
Confidence 4456677788999999999999999999999999999999999999999999 999999999999999999999 9999
Q ss_pred HHHHHHHHhchhChHHHHHHHHHHHHhhcCChhhHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhcCChh
Q 003035 290 IVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPK 359 (855)
Q Consensus 290 ~~~~ll~~A~~~~~~~Lk~~C~~~l~~~l~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~v~~~~~ 359 (855)
++.+++.+|++|+++.|+..|+++|.+.++ ++||+.++.+|..|+++.|.+.|.+||.+||.+++++++
T Consensus 104 ~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~-~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~~v~~s~~ 172 (172)
T 3htm_A 104 MADDLLAAADKYALERLKVMCEDALCSNLS-VENAAEILILADLHSADQLKTQAVDFINYHATDVLETSG 172 (172)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHTCC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999 999999999999999999999999999999999988763
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.93 E-value=3.3e-25 Score=244.55 Aligned_cols=301 Identities=16% Similarity=0.100 Sum_probs=241.1
Q ss_pred hHhhhhcHHHHHH-HHHHHHHhcc------hhhhhhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHhhccCcchH
Q 003035 428 VMFEREEYKDACY-YFEAAADAGH------IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREK 500 (855)
Q Consensus 428 ~~l~~g~~~eA~~-~~~~Al~~~~------~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~~~~~~~A 500 (855)
.+.-.|+|++|+. .|++++...+ ..+++.+|.++...|++++|+..
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~--------------------------- 86 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLL--------------------------- 86 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHH---------------------------
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHH---------------------------
Confidence 4556689999998 9998886543 23577888888888887666555
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 003035 501 IVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALES 579 (855)
Q Consensus 501 ~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p-~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P 579 (855)
++++++++|++..++..+|.++...|++++|+..|++++...| +..++..+|.+|..+|++++|+..+++++..+|
T Consensus 87 ---~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 163 (368)
T 1fch_A 87 ---FEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP 163 (368)
T ss_dssp ---HHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST
T ss_pred ---HHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 4555556677777788899999999999999999999999998 578888999999999999999999999999999
Q ss_pred chhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHH
Q 003035 580 NYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAA 659 (855)
Q Consensus 580 ~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A 659 (855)
++.......... . . .......+...+.++ ..|++++|
T Consensus 164 ~~~~~~~~~~~~---------------~-----------------------~----~~~~~~~~~~~~~~~-~~~~~~~A 200 (368)
T 1fch_A 164 AYAHLVTPAEEG---------------A-----------------------G----GAGLGPSKRILGSLL-SDSLFLEV 200 (368)
T ss_dssp TTGGGCC---------------------------------------------------------CTTHHHH-HHHHHHHH
T ss_pred CcHHHHHHHHHH---------------h-----------------------h----hhcccHHHHHHHHHh-hcccHHHH
Confidence 875332211000 0 0 000001112334444 88999999
Q ss_pred HHHHHHHHhcCCC--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHH
Q 003035 660 MRCLRLARNHSSS--EHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEE 736 (855)
Q Consensus 660 ~~~l~~al~~~p~--~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~ 736 (855)
+..|+++++.+|+ ++.++..+|.++...|++++|+..|+++++++|++ .+++.+|.++...|++++|+.. |++
T Consensus 201 ~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~----~~~ 276 (368)
T 1fch_A 201 KELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAA----YRR 276 (368)
T ss_dssp HHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH----HHH
T ss_pred HHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHH----HHH
Confidence 9999999999999 89999999999999999999999999999999999 9999999999999999999999 999
Q ss_pred HhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--c-----------HHHHHHHHHHHHHcCCHHHHHH
Q 003035 737 ALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--H-----------TRAHQGLARVYYLKNELKAAYD 801 (855)
Q Consensus 737 al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~-----------~~a~~~lg~~~~~~g~~~~A~~ 801 (855)
++ ...|+ .++.++|.+|...|++++|+..|++++++. + ..++.++|.++..+|++++|..
T Consensus 277 al-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 277 AL-----ELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HH-----HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HH-----HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 99 77776 899999999999999999999999999987 5 7899999999999999999999
Q ss_pred HHHHHHHHc
Q 003035 802 EMTKLLEKA 810 (855)
Q Consensus 802 ~~~kal~~~ 810 (855)
.++++++..
T Consensus 352 ~~~~~l~~~ 360 (368)
T 1fch_A 352 ADARDLSTL 360 (368)
T ss_dssp HHTTCHHHH
T ss_pred hHHHHHHHH
Confidence 998887653
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.93 E-value=6e-25 Score=243.13 Aligned_cols=270 Identities=11% Similarity=0.048 Sum_probs=228.9
Q ss_pred HHHHHHHHhCCCCch----hHHHHHHHHHHhCCHHHHHHHHHHHHccCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003035 502 VDLNYASELDPTLSF----PYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLA 576 (855)
Q Consensus 502 ~~l~~a~~ldP~~~~----a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p-~~~~l~lra~~y~~~gd~~~A~~~~~~aL~ 576 (855)
..+.++....|.++. .++.+|..+...|++++|+..|++++..+| +...+..+|.+|..+|++++|+..|++++.
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 127 (365)
T 4eqf_A 48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLE 127 (365)
T ss_dssp -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 344555555555544 499999999999999999999999999998 578889999999999999999999998887
Q ss_pred cCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCH
Q 003035 577 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQ 656 (855)
Q Consensus 577 ~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~ 656 (855)
++|++ ..+++.+|.++...|++
T Consensus 128 ~~p~~----------------------------------------------------------~~~~~~l~~~~~~~g~~ 149 (365)
T 4eqf_A 128 LQPNN----------------------------------------------------------LKALMALAVSYTNTSHQ 149 (365)
T ss_dssp HCTTC----------------------------------------------------------HHHHHHHHHHHHHTTCH
T ss_pred cCCCC----------------------------------------------------------HHHHHHHHHHHHccccH
Confidence 66653 34566778899999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHH----------HHHHHHCCCHHHHHHHHHHHHhccCC--h-HHHHHHHHHHHHCCCC
Q 003035 657 KAAMRCLRLARNHSSSEHERLVYE----------GWILYDTGHREEALSRAEKSISIERT--F-EAFFLKAYILADTNLD 723 (855)
Q Consensus 657 ~~A~~~l~~al~~~p~~~~~~~~l----------g~~~~~~g~~~eAl~~~~kal~~~p~--~-~a~~~lg~~~~~~g~~ 723 (855)
++|+..|+++++.+|++...+..+ |.++...|++++|+..|+++++.+|+ + .+++.+|.++...|++
T Consensus 150 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~ 229 (365)
T 4eqf_A 150 QDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEF 229 (365)
T ss_dssp HHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCH
Confidence 999999999999999887776655 99999999999999999999999999 6 9999999999999999
Q ss_pred chhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHH
Q 003035 724 PESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAA 799 (855)
Q Consensus 724 ~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A 799 (855)
++|+.. |++++ ...|+ .+++++|.+|...|++++|+..|+++++++ ++.+++++|.++..+|++++|
T Consensus 230 ~~A~~~----~~~al-----~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 230 NRAIDA----FNAAL-----TVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHH----HHHHH-----HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHH----HHHHH-----HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 999999 99999 77776 899999999999999999999999999998 899999999999999999999
Q ss_pred HHHHHHHHHHccC------------CHHHHHHHhh----cCCHHHHHHHHHHHHh
Q 003035 800 YDEMTKLLEKAQY------------SASAFEKRSE----YSDREMAKNDLNMATQ 838 (855)
Q Consensus 800 ~~~~~kal~~~p~------------~~~a~~~lg~----~g~~eeA~~~~~kAl~ 838 (855)
+..|++++++.|+ +..+|..++. +|+.+.|....++.+.
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 9999999999988 3677888888 8999999888766443
No 24
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.93 E-value=2.7e-26 Score=246.16 Aligned_cols=176 Identities=19% Similarity=0.291 Sum_probs=148.1
Q ss_pred hcCCCCCCcEEEEEc---CeEEEeeehhhhcCCHHHHHhhcCCCccCCCCeeEecCC------CCCHHHHHHHHHHhccC
Q 003035 211 CLSLEEDDSVTFCVR---DKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHD------GVSVEGLRAVEVYTRTS 281 (855)
Q Consensus 211 ~~~~~~~~~V~f~v~---~~~~~aHr~vLaa~S~~F~~mf~~~~~E~~~~~I~l~~~------~is~~~~~~ll~y~YTg 281 (855)
...++..+||+|+|+ |++|+|||+||+++|+||++||+++|.|+.+.+|+| + ++++++|+.+++|+|||
T Consensus 26 l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l--~~~~~~~~v~~~~f~~ll~~~Ytg 103 (279)
T 3i3n_A 26 QRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEM--RKWSSEPGPEPDTVEAVIEYMYTG 103 (279)
T ss_dssp HHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEEC--CCCSSTTCSCHHHHHHHHHHHHHS
T ss_pred HHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEe--ccccccCCCCHHHHHHHHHhhCcC
Confidence 345667778999998 999999999999999999999999999999999999 7 89999999999999999
Q ss_pred CCCCCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhcCChhhHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhcCChhHH
Q 003035 282 RVDLFCPGIVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVM 361 (855)
Q Consensus 282 ~l~~~~~~~~~~ll~~A~~~~~~~Lk~~C~~~l~~~l~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~v~~~~~f~ 361 (855)
++. ++.+++.+++.+|++|+++.|+..|+++|.+.++ ++||+.++.+|..|++..|.+.|.+||.+||.+++++++|.
T Consensus 104 ~~~-i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~-~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~ 181 (279)
T 3i3n_A 104 RIR-VSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLH-LSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEFY 181 (279)
T ss_dssp EEE-EETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHHHTTSSGGG
T ss_pred Ccc-cCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCC-cchHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcChh
Confidence 999 9999999999999999999999999999999999 99999999999999999999999999999999999999887
Q ss_pred hh--------hcCchhHHHHHhhchhhHHHHHHHHHhhcccc
Q 003035 362 KI--------FCSSEATERLANVGHASFLLYYFLSQVAMEKD 395 (855)
Q Consensus 362 ~l--------l~~~~~~~r~~~~~~~~f~l~~~La~~~~~~~ 395 (855)
+| +.+++. .+.++..++..++.++.....
T Consensus 182 ~L~~~~l~~lL~~d~L-----~v~sE~~vf~av~~W~~~~~~ 218 (279)
T 3i3n_A 182 TLPFHLIRDWLSDLEI-----TVDSEEVLFETVLKWVQRNAE 218 (279)
T ss_dssp GSCHHHHHHHHTCSSC-----CCSCHHHHHHHHHHHHHTTHH
T ss_pred cCCHHHHHHHhcCcCC-----CCCCHHHHHHHHHHHHHcCHH
Confidence 65 333332 245566667777777764433
No 25
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.92 E-value=6.9e-25 Score=245.62 Aligned_cols=253 Identities=12% Similarity=0.104 Sum_probs=228.0
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCC-CHhHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCchhh
Q 003035 506 YASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADD-YESALRDTLALLALESNYMM 583 (855)
Q Consensus 506 ~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p-~~~~l~lra~~y~~~gd-~~~A~~~~~~aL~~~P~~~~ 583 (855)
.++.++|++..+|.++|.++...|++++|+..|+++|.++| +..++..+|.++..+|+ +++|+..|++++.++|++
T Consensus 88 ~ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~-- 165 (382)
T 2h6f_A 88 VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN-- 165 (382)
T ss_dssp SEECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC--
T ss_pred hhhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC--
Confidence 45678999999999999999999999999999999999999 57899999999999996 999999999888776653
Q ss_pred hhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 003035 584 FHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCL 663 (855)
Q Consensus 584 ~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l 663 (855)
..+|+.+|.++..+|++++|+..|
T Consensus 166 --------------------------------------------------------~~a~~~~g~~~~~~g~~~eAl~~~ 189 (382)
T 2h6f_A 166 --------------------------------------------------------YQVWHHRRVLVEWLRDPSQELEFI 189 (382)
T ss_dssp --------------------------------------------------------HHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred --------------------------------------------------------HHHHHHHHHHHHHccCHHHHHHHH
Confidence 445677888999999999999999
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHH-CCCCchhH-HHHHHHHHHHhcC
Q 003035 664 RLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILAD-TNLDPESS-TYVIQLLEEALRC 740 (855)
Q Consensus 664 ~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~-~g~~~~A~-~~~~~lle~al~~ 740 (855)
+++++++|++..+|+++|+++..+|++++|+..|+++++++|++ .+|+++|.++.. .|..++|+ ...+..|++++
T Consensus 190 ~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al-- 267 (382)
T 2h6f_A 190 ADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMI-- 267 (382)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHH--
T ss_pred HHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH--
Confidence 99999999999999999999999999999999999999999999 999999999999 55558884 22223399999
Q ss_pred CCCCCCHH--HHHHHHHHHHHHcC--CHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcC---------CHHHHHHHHHH
Q 003035 741 PSDGLRKG--QALNNLGSIYVECG--KLDQAENCYINALDIK--HTRAHQGLARVYYLKN---------ELKAAYDEMTK 805 (855)
Q Consensus 741 ~~~~~~p~--~a~~~LG~~y~~~g--~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g---------~~~~A~~~~~k 805 (855)
.++|+ .+|+++|.++...| ++++|++.++++ +.+ ++.++..+|.+|..+| .+++|++.|++
T Consensus 268 ---~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~ 343 (382)
T 2h6f_A 268 ---KLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEI 343 (382)
T ss_dssp ---HHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred ---HHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 88888 99999999999988 699999999988 666 8899999999999985 25899999999
Q ss_pred H-HHHccCCHHHHHHHhh
Q 003035 806 L-LEKAQYSASAFEKRSE 822 (855)
Q Consensus 806 a-l~~~p~~~~a~~~lg~ 822 (855)
+ ++++|....+|..++.
T Consensus 344 l~~~~DP~r~~~w~~~~~ 361 (382)
T 2h6f_A 344 LAKEKDTIRKEYWRYIGR 361 (382)
T ss_dssp HHHTTCGGGHHHHHHHHH
T ss_pred HHHHhCchhHHHHHHHHH
Confidence 9 9999999999999887
No 26
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.92 E-value=2.7e-24 Score=240.83 Aligned_cols=244 Identities=12% Similarity=0.100 Sum_probs=221.4
Q ss_pred HHccCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhccc
Q 003035 541 IIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSS 619 (855)
Q Consensus 541 ~l~~~p~-~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~ 619 (855)
+|.++|+ .+++..+|.++...|++++|+..+++++.++|++
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~-------------------------------------- 130 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN-------------------------------------- 130 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC--------------------------------------
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccC--------------------------------------
Confidence 3456663 5778889999999999999999999888776654
Q ss_pred ccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Q 003035 620 VDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNC-QKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAE 698 (855)
Q Consensus 620 ~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~-~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~ 698 (855)
..+++.+|.++..+|+ +++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+
T Consensus 131 --------------------~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~ 190 (382)
T 2h6f_A 131 --------------------YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIA 190 (382)
T ss_dssp --------------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 3456778889999997 9999999999999999999999999999999999999999999
Q ss_pred HHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHH-cCCHHHH-----HH
Q 003035 699 KSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVE-CGKLDQA-----EN 769 (855)
Q Consensus 699 kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~-~g~~~~A-----~~ 769 (855)
++++++|++ .+|+++|.++...|++++|+.. |++++ .++|+ .+|+++|.++.. .|.+++| ++
T Consensus 191 kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~----~~~al-----~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~ 261 (382)
T 2h6f_A 191 DILNQDAKNYHAWQHRQWVIQEFKLWDNELQY----VDQLL-----KEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQ 261 (382)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHH----HHHHH-----HHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHH
T ss_pred HHHHhCccCHHHHHHHHHHHHHcCChHHHHHH----HHHHH-----HhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence 999999999 9999999999999999999999 99999 88888 999999999999 5665888 59
Q ss_pred HHHHHHhcc--cHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHccCCHHHHHHHhh----cC--------C-HHHHHHH
Q 003035 770 CYINALDIK--HTRAHQGLARVYYLKN--ELKAAYDEMTKLLEKAQYSASAFEKRSE----YS--------D-REMAKND 832 (855)
Q Consensus 770 ~~~kAL~~~--~~~a~~~lg~~~~~~g--~~~~A~~~~~kal~~~p~~~~a~~~lg~----~g--------~-~eeA~~~ 832 (855)
+|++|++++ +..+|+++|.++..+| ++++|++.++++ +.+|+++.++..+|. .| + +++|++.
T Consensus 262 ~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~ 340 (382)
T 2h6f_A 262 YTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALEL 340 (382)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 999999999 8999999999999988 699999999998 999999999999998 32 3 5999999
Q ss_pred HHHH-HhcCCCCcccchhhhc
Q 003035 833 LNMA-TQLDPLRTYPYRYRAA 852 (855)
Q Consensus 833 ~~kA-l~l~P~~~~~~~~~a~ 852 (855)
|+++ +++||.+...|.+++-
T Consensus 341 ~~~l~~~~DP~r~~~w~~~~~ 361 (382)
T 2h6f_A 341 CEILAKEKDTIRKEYWRYIGR 361 (382)
T ss_dssp HHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHhCchhHHHHHHHHH
Confidence 9999 9999999999988864
No 27
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.92 E-value=8.3e-25 Score=238.56 Aligned_cols=146 Identities=18% Similarity=0.244 Sum_probs=128.2
Q ss_pred hhcCCCCCCcEEEEEcCeEEEeeehhhhcCCHHHHHhhcCCCccCCCCeeEecCCCCCHHHHHHHHHHhccCCCCCCCHH
Q 003035 210 VCLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPG 289 (855)
Q Consensus 210 ~~~~~~~~~~V~f~v~~~~~~aHr~vLaa~S~~F~~mf~~~~~E~~~~~I~l~~~~is~~~~~~ll~y~YTg~l~~~~~~ 289 (855)
+...+...+||+|+|+|++|+|||.|||++|+||++||.++|.|+...+|+| +++++++|+.+|+|+|||.++ ++.+
T Consensus 167 ~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l--~~~~~~~f~~~L~~iYt~~~~-~~~~ 243 (312)
T 3hqi_A 167 GLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEI--NDVEPEVFKEMMCFIYTGKAP-NLDK 243 (312)
T ss_dssp HHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEE--CSSCHHHHHHHHHHHHHSCCT-THHH
T ss_pred HHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEe--cCCCHHHHHHHHHhhcCCCCC-ChHH
Confidence 3456677788999999999999999999999999999999999999999999 999999999999999999999 8899
Q ss_pred HHHHHHHHhchhChHHHHHHHHHHHHhhcCChhhHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhcCChh
Q 003035 290 IVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPK 359 (855)
Q Consensus 290 ~~~~ll~~A~~~~~~~Lk~~C~~~l~~~l~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~v~~~~~ 359 (855)
++.+||.+|++|+++.|+..|+++|.+.++ ++||+.++.+|..|++..|++.|++||..|+.+|+++++
T Consensus 244 ~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~-~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~~s~g 312 (312)
T 3hqi_A 244 MADDLLAAADKYALERLKVMCEDALCSNLS-VENAAEILILADLHSADQLKTQAVDFINYHATDVLETSG 312 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCC
Confidence 999999999999999999999999999999 999999999999999999999999999999999988763
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.91 E-value=1.1e-23 Score=227.59 Aligned_cols=262 Identities=11% Similarity=0.022 Sum_probs=215.5
Q ss_pred chhHHHHHHHHHHhCCHHHHHHHHHHHHccCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHH
Q 003035 515 SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHL 593 (855)
Q Consensus 515 ~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p-~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l 593 (855)
...++.+|..+...|++++|+..+++++...| +...+..+|.++...|++++|+..+++++..+|++
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------------ 88 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD------------ 88 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC------------
Confidence 34578889999999999999999999998888 56778888999999999999998888888765542
Q ss_pred HHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 003035 594 VKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE 673 (855)
Q Consensus 594 ~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~ 673 (855)
...++.+|.++...|++++|+..|+++++.+|++
T Consensus 89 ----------------------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 122 (327)
T 3cv0_A 89 ----------------------------------------------IAVHAALAVSHTNEHNANAALASLRAWLLSQPQY 122 (327)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT
T ss_pred ----------------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence 3345567778888888888888888888888888
Q ss_pred HHHHHHH--------------HH-HHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHH
Q 003035 674 HERLVYE--------------GW-ILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEA 737 (855)
Q Consensus 674 ~~~~~~l--------------g~-~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~a 737 (855)
...+..+ |. ++...|++++|+..++++++..|++ .+++.+|.++...|++++|+.. ++++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~----~~~~ 198 (327)
T 3cv0_A 123 EQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAAN----LRRA 198 (327)
T ss_dssp TTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHH----HHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHH----HHHH
Confidence 7777666 66 6778888888999999988888888 8888888888888888888888 8888
Q ss_pred hcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccC-
Q 003035 738 LRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQY- 812 (855)
Q Consensus 738 l~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~- 812 (855)
+ ...|+ .++..+|.++...|++++|+..|+++++.. ++.++..+|.++..+|++++|++.++++++..|+
T Consensus 199 ~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 273 (327)
T 3cv0_A 199 V-----ELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGG 273 (327)
T ss_dssp H-----HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred H-----HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 8 66665 788888999988999999999999988887 7888888999999999999999999999998888
Q ss_pred -----------CHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCC
Q 003035 813 -----------SASAFEKRSE----YSDREMAKNDLNMATQLDPLR 843 (855)
Q Consensus 813 -----------~~~a~~~lg~----~g~~eeA~~~~~kAl~l~P~~ 843 (855)
++.++..+|. .|++++|...++++++..|++
T Consensus 274 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 274 TTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp CC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred ccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence 7888888888 888999988888887765543
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.91 E-value=2.2e-23 Score=230.53 Aligned_cols=268 Identities=14% Similarity=0.130 Sum_probs=215.8
Q ss_pred hhhhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHhhccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHH
Q 003035 453 SLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIR 532 (855)
Q Consensus 453 a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~~~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~ 532 (855)
.++.+|..+..+|++++|+.. ++++++++|++..++..+|.++...|+++
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~------------------------------~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 116 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILF------------------------------MEAAILQDPGDAEAWQFLGITQAENENEQ 116 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHH------------------------------HHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHH------------------------------HHHHHHhCcCCHHHHHHHHHHHHHCCCHH
Confidence 477888888888887666554 55555667777778889999999999999
Q ss_pred HHHHHHHHHHccCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHH
Q 003035 533 AAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWI 611 (855)
Q Consensus 533 ~A~~~~~k~l~~~p-~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~ 611 (855)
+|+..|++++..+| +..++..+|.+|..+|++++|+..+++++.++|++........
T Consensus 117 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~---------------------- 174 (365)
T 4eqf_A 117 AAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK---------------------- 174 (365)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC---------------------------
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhc----------------------
Confidence 99999999999998 4788899999999999999999999999999988643211110
Q ss_pred HHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHCCC
Q 003035 612 KLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS--EHERLVYEGWILYDTGH 689 (855)
Q Consensus 612 ~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~--~~~~~~~lg~~~~~~g~ 689 (855)
.....+..+|.++...|++++|+..|+++++.+|+ ++.+++.+|.++..+|+
T Consensus 175 --------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~ 228 (365)
T 4eqf_A 175 --------------------------GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGE 228 (365)
T ss_dssp ----------------------------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTC
T ss_pred --------------------------cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCC
Confidence 11123345677788889999999999999999998 88899999999999999
Q ss_pred HHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHH
Q 003035 690 REEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQ 766 (855)
Q Consensus 690 ~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~ 766 (855)
+++|+..|+++++.+|++ .+++.+|.++...|++++|+.. |++++ ...|+ .++.++|.+|...|++++
T Consensus 229 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~----~~~al-----~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 229 FNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEA----YTRAL-----EIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH----HHHHH-----HHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHH-----hcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999988 8999999999999999999999 99998 66776 888999999999999999
Q ss_pred HHHHHHHHHhcc-c-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003035 767 AENCYINALDIK-H-------------TRAHQGLARVYYLKNELKAAYDEMTKLL 807 (855)
Q Consensus 767 A~~~~~kAL~~~-~-------------~~a~~~lg~~~~~~g~~~~A~~~~~kal 807 (855)
|+.+|++++++. + ..++.++|.++..+|+.+.|....++.+
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 999999999877 2 5678899999999999988877766543
No 30
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.91 E-value=1.4e-23 Score=216.07 Aligned_cols=192 Identities=17% Similarity=0.175 Sum_probs=171.6
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHH
Q 003035 637 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAY 715 (855)
Q Consensus 637 p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~ 715 (855)
|.++..++.+|..+.+.|++++|+..|+++++.+|+++++++.+|.++..+|++++|+..|+++++++|++ .+++.+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHC-----------CCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-cHH
Q 003035 716 ILADT-----------NLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK-HTR 781 (855)
Q Consensus 716 ~~~~~-----------g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~-~~~ 781 (855)
++... |++++|+.. |++++ .++|+ .++.++|.++...|++++|+..|+++++++ ++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~----~~~al-----~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 152 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSV----LKDAE-----RVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPE 152 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHH----HHHHH-----HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHH----HHHHH-----HhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchH
Confidence 99999 999999999 99999 88888 999999999999999999999999999998 999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh----cCCHHHHHHHHHHHH
Q 003035 782 AHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMAT 837 (855)
Q Consensus 782 a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~----~g~~eeA~~~~~kAl 837 (855)
+++++|.++..+|++++|+..|+++++++|+++.++..+|. .|++++|+..|+++-
T Consensus 153 ~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 153 IRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999 899999999998764
No 31
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.91 E-value=8.4e-22 Score=230.43 Aligned_cols=405 Identities=10% Similarity=-0.086 Sum_probs=283.7
Q ss_pred HHHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhcc--hhhhhhHHHHHHHhCChHHHHHHHHhHHHcCC
Q 003035 405 LERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLINSIISEHK 482 (855)
Q Consensus 405 le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~--~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~p 482 (855)
|+++++.+|++. .+|..++. +.+.|++++|...|+++++..| ...+...+..+...|+.+.|...+++++...|
T Consensus 2 le~al~~~P~~~---~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p 77 (530)
T 2ooe_A 2 AEKKLEENPYDL---DAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL 77 (530)
T ss_dssp HHHHHHHCTTCH---HHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC
T ss_pred hhhHhhhCCCCH---HHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Confidence 455566566542 35556665 3566777777777777776543 34566666677777777777777777777776
Q ss_pred CchHHHHHHh-----hccCcchHHH----HHHHHHHh---CCCCchhHHHHHHHHHH---------hCCHHHHHHHHHHH
Q 003035 483 PTGWMYQERS-----LYNLGREKIV----DLNYASEL---DPTLSFPYKYRAVAKME---------EGQIRAAISEIDRI 541 (855)
Q Consensus 483 ~~~~~y~~~~-----~~~~~~~A~~----~l~~a~~l---dP~~~~a~~~~a~~~~~---------~~~~~~A~~~~~k~ 541 (855)
+ ..++.... ..+..++|.+ .|+++++. +|+....|...+..... .|+++.|...|+++
T Consensus 78 ~-~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 78 H-IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp C-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred C-hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 3 33322221 1223334433 56666553 56666666555555544 78999999999999
Q ss_pred HccCCCH--h-HHHHHHHH-------------HHHcCCHHHHHHHHHH------HHhc-----CCchhhhhcccchhHHH
Q 003035 542 IVFKLSV--D-CLELRAWL-------------FIAADDYESALRDTLA------LLAL-----ESNYMMFHGRVSGDHLV 594 (855)
Q Consensus 542 l~~~p~~--~-~l~lra~~-------------y~~~gd~~~A~~~~~~------aL~~-----~P~~~~~~~~~~~~~l~ 594 (855)
+. .|.. . .+...+.+ ....+++..|...++. .+.. .|.... ....
T Consensus 157 l~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~-----~~~~-- 228 (530)
T 2ooe_A 157 CV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTP-----QEAQ-- 228 (530)
T ss_dssp TT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--C-----CHHH--
T ss_pred Hh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCCh-----hHHH--
Confidence 98 4532 1 11111111 1123456666655554 2221 111000 0000
Q ss_pred HHHHHHhhccChhhhHHHHh--hhc--cccccc-----chHHHHHHHHHcCCCChHHHHHHHHHHHH-------cCCHH-
Q 003035 595 KLLNHHVRSWSPADCWIKLY--DRW--SSVDDI-----GSLAVINQMLINDPGKSFLRFRQSLLLLR-------LNCQK- 657 (855)
Q Consensus 595 ~ll~~~~~~~~~a~~~~~~~--~~~--~~~~d~-----~al~~~~~~l~~~p~~~~~~~~~a~~l~~-------~g~~~- 657 (855)
....|.... +.. ...++. .++..+.+++..+|.++.+|+..|..+.+ .|+++
T Consensus 229 -----------~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~ 297 (530)
T 2ooe_A 229 -----------QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNN 297 (530)
T ss_dssp -----------HHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHH
T ss_pred -----------HHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhh
Confidence 001121111 100 011121 24567899999999999999999999886 79987
Q ss_pred ------HHHHHHHHHHh-cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh--HHHHHHHHHHHHCCCCchhHH
Q 003035 658 ------AAMRCLRLARN-HSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF--EAFFLKAYILADTNLDPESST 728 (855)
Q Consensus 658 ------~A~~~l~~al~-~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~--~a~~~lg~~~~~~g~~~~A~~ 728 (855)
+|+..|+++++ +.|++..+|..+|.++...|++++|...|+++++++|.+ .+|..+|.++...|++++|..
T Consensus 298 a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~ 377 (530)
T 2ooe_A 298 AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRM 377 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999997 899999999999999999999999999999999999986 589999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCHH--HHHHHHHHH-HHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHH
Q 003035 729 YVIQLLEEALRCPSDGLRKG--QALNNLGSI-YVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEM 803 (855)
Q Consensus 729 ~~~~lle~al~~~~~~~~p~--~a~~~LG~~-y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~ 803 (855)
. |++|+ ...|. ..+...+.+ +...|++++|...|+++++.. ++.++..+|.++...|+.++|...|
T Consensus 378 ~----~~~Al-----~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~ 448 (530)
T 2ooe_A 378 I----FKKAR-----EDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLF 448 (530)
T ss_dssp H----HHHHH-----TCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred H----HHHHH-----hccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHH
Confidence 9 99999 55454 555555554 446999999999999999998 8999999999999999999999999
Q ss_pred HHHHHHccCCHH----HHHHHhh----cCCHHHHHHHHHHHHhcCCC
Q 003035 804 TKLLEKAQYSAS----AFEKRSE----YSDREMAKNDLNMATQLDPL 842 (855)
Q Consensus 804 ~kal~~~p~~~~----a~~~lg~----~g~~eeA~~~~~kAl~l~P~ 842 (855)
+++++..|.++. .|..... .|+.+.+...++++++..|+
T Consensus 449 ~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 449 ERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 999998776654 6655555 89999999999999999985
No 32
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.90 E-value=1.6e-22 Score=213.24 Aligned_cols=243 Identities=14% Similarity=0.072 Sum_probs=214.5
Q ss_pred hhHHHHHHHHHHhCCHHHHHHHHHHHHccCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHH
Q 003035 516 FPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLV 594 (855)
Q Consensus 516 ~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~-~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~ 594 (855)
..++.+|..+...|++++|+..|+++++.+|+ ...+..+|.+|..+|++++|+..+++++. .|++..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~----------- 71 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATK----------- 71 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTT-----------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchh-----------
Confidence 45678899999999999999999999999984 66888899999999999999999999997 443210
Q ss_pred HHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 003035 595 KLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH 674 (855)
Q Consensus 595 ~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~ 674 (855)
.....++.+|.++...|++++|+..|+++++.+|+++
T Consensus 72 -------------------------------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~ 108 (272)
T 3u4t_A 72 -------------------------------------------AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL 108 (272)
T ss_dssp -------------------------------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred -------------------------------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH
Confidence 1234567788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHH
Q 003035 675 ERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QAL 751 (855)
Q Consensus 675 ~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~ 751 (855)
.++..+|.++..+|++++|+..|+++++.+|++ .+++.+|......+++++|+.. |++++ ...|+ .++
T Consensus 109 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~a~-----~~~p~~~~~~ 179 (272)
T 3u4t_A 109 DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS----FVKVL-----ELKPNIYIGY 179 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH----HHHHH-----HHSTTCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH----HHHHH-----HhCccchHHH
Confidence 999999999999999999999999999999999 9999999555555699999999 99999 77777 899
Q ss_pred HHHHHHHHHcCC---HHHHHHHHHHHHhcc----c------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHH
Q 003035 752 NNLGSIYVECGK---LDQAENCYINALDIK----H------TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFE 818 (855)
Q Consensus 752 ~~LG~~y~~~g~---~~~A~~~~~kAL~~~----~------~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~ 818 (855)
..+|.++...|+ +++|+..|++++++. + ..++..+|.++..+|++++|++.|+++++++|+++.++.
T Consensus 180 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 259 (272)
T 3u4t_A 180 LWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAID 259 (272)
T ss_dssp HHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHH
Confidence 999999999998 999999999999875 2 268899999999999999999999999999999999998
Q ss_pred HHhh
Q 003035 819 KRSE 822 (855)
Q Consensus 819 ~lg~ 822 (855)
.++.
T Consensus 260 ~l~~ 263 (272)
T 3u4t_A 260 GLKM 263 (272)
T ss_dssp HHC-
T ss_pred Hhhh
Confidence 8877
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.90 E-value=1.5e-22 Score=218.60 Aligned_cols=276 Identities=12% Similarity=0.072 Sum_probs=225.5
Q ss_pred hhhhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHhhccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHH
Q 003035 453 SLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIR 532 (855)
Q Consensus 453 a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~~~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~ 532 (855)
.++.+|..+...|++++|+.. ++++++.+|++..++..+|.++...|+++
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~------------------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 72 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALA------------------------------FEAVCQAAPEREEAWRSLGLTQAENEKDG 72 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHH------------------------------HHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhccHHHHHHH------------------------------HHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 456667777777776655554 55555667777778888999999999999
Q ss_pred HHHHHHHHHHccCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHH
Q 003035 533 AAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWI 611 (855)
Q Consensus 533 ~A~~~~~k~l~~~p-~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~ 611 (855)
+|+..+++++...| +...+..+|.++...|++++|+..+++++..+|++........
T Consensus 73 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~---------------------- 130 (327)
T 3cv0_A 73 LAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNL---------------------- 130 (327)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC---------------------------
T ss_pred HHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHh----------------------
Confidence 99999999999988 5788888999999999999999999999999998643221110
Q ss_pred HHhhhcccccccchHHHHHHHHHcCCCChHHHHHH-HH-HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC
Q 003035 612 KLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQ-SL-LLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGH 689 (855)
Q Consensus 612 ~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~-a~-~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~ 689 (855)
...|.....+ .+ +. ++...|++++|+..++++++.+|+++.++..+|.++...|+
T Consensus 131 ----------------------~~~~~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 187 (327)
T 3cv0_A 131 ----------------------QADVDIDDLN-VQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNN 187 (327)
T ss_dssp --------------------------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC
T ss_pred ----------------------HHHHHHHHHH-HHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc
Confidence 0001111111 22 22 46778889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHH
Q 003035 690 REEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQ 766 (855)
Q Consensus 690 ~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~ 766 (855)
+++|+..++++++.+|++ .++..+|.++...|++++|+.. +++++ ...|+ .++.++|.++...|++++
T Consensus 188 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~a~-----~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 188 YDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDA----YNRAL-----DINPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH----HHHHH-----HHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH----HHHHH-----HcCCCCHHHHHHHHHHHHHhccHHH
Confidence 999999999999999998 9999999999999999999999 99999 66666 889999999999999999
Q ss_pred HHHHHHHHHhcc-c-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccC
Q 003035 767 AENCYINALDIK-H-------------TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQY 812 (855)
Q Consensus 767 A~~~~~kAL~~~-~-------------~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~ 812 (855)
|++.|++++++. + ..++..+|.++..+|++++|...++++++..|+
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHH
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcch
Confidence 999999999887 4 678899999999999999999999988887664
No 34
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.90 E-value=3.4e-22 Score=229.32 Aligned_cols=340 Identities=14% Similarity=0.065 Sum_probs=174.7
Q ss_pred HHhhhhHhhhhcHHHHHHHHHHHHHhcchhhhhhHHHHHHHhCCh---HHHHHHHHhHHHcCCCchHHHHHHhh--c---
Q 003035 423 HQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQ---YSAYKLINSIISEHKPTGWMYQERSL--Y--- 494 (855)
Q Consensus 423 ~~LG~~~l~~g~~~eA~~~~~~Al~~~~~~a~~~la~~~~~~g~~---~~A~~~l~~~i~~~p~~~~~y~~~~~--~--- 494 (855)
..+|..++++|++++|+++|+++.+.++..+++.+|.+|...|+. .+|+..++++++.+|. ++...+. +
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~---A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPR---AQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC-------------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHH---HHHHHHHHHHhCC
Confidence 357888888889999999999888888888888888888888777 6777777666655221 1111111 0
Q ss_pred ----cCcchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccC--CCHhHHHHHHHHHHHcCCHHHHH
Q 003035 495 ----NLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFK--LSVDCLELRAWLFIAADDYESAL 568 (855)
Q Consensus 495 ----~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~--p~~~~l~lra~~y~~~gd~~~A~ 568 (855)
.+.++|+..|+++++ ++++.+++.+|.+|...+..+++...++...... ..+.+...+|.+|...+.++++.
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFA--NGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHH--TTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGH
T ss_pred CCCCcCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCH
Confidence 122456666666665 3444466666666665554433322222222111 12444555566666655444333
Q ss_pred HHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHH
Q 003035 569 RDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSL 648 (855)
Q Consensus 569 ~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~ 648 (855)
....... ..+...+|. +++.+|.
T Consensus 162 ~~a~~~~------------------------------------------------------~~a~~~~~~---a~~~Lg~ 184 (452)
T 3e4b_A 162 DDVERIC------------------------------------------------------KAALNTTDI---CYVELAT 184 (452)
T ss_dssp HHHHHHH------------------------------------------------------HHHTTTCTT---HHHHHHH
T ss_pred HHHHHHH------------------------------------------------------HHHHcCCHH---HHHHHHH
Confidence 3211111 111222222 5555566
Q ss_pred HHHHcC---CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHC----CCHHHHHHHHHHHHhccCCh-HHHHHHHHH-H--
Q 003035 649 LLLRLN---CQKAAMRCLRLARNHSSSEHERLVYEGWILYDT----GHREEALSRAEKSISIERTF-EAFFLKAYI-L-- 717 (855)
Q Consensus 649 ~l~~~g---~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~----g~~~eAl~~~~kal~~~p~~-~a~~~lg~~-~-- 717 (855)
++...| ++++|+..|+++.+..|..+..++.+|.+|... +++++|+..|+++. |.+ .+++++|.+ +
T Consensus 185 ~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~ 261 (452)
T 3e4b_A 185 VYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDF 261 (452)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHS
T ss_pred HHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhC
Confidence 666666 566666666666666666666556666666444 56666666666665 444 666666665 3
Q ss_pred HHCCCCchhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 003035 718 ADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECG-----KLDQAENCYINALDIKHTRAHQGLARVYYL 792 (855)
Q Consensus 718 ~~~g~~~~A~~~~~~lle~al~~~~~~~~p~~a~~~LG~~y~~~g-----~~~~A~~~~~kAL~~~~~~a~~~lg~~~~~ 792 (855)
...+++++|+.. |+++. +.....++++||.+|. .| ++++|+.+|++|. ..++.+++++|.+|..
T Consensus 262 ~~~~d~~~A~~~----~~~Aa-----~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~ 330 (452)
T 3e4b_A 262 PELGDVEQMMKY----LDNGR-----AADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRR 330 (452)
T ss_dssp GGGCCHHHHHHH----HHHHH-----HTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHH----HHHHH-----HCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHC
Confidence 345556666666 66665 3333356666666665 33 6666666666666 3366666666655554
Q ss_pred ----cCCHHHHHHHHHHHHHHccCCHHHHHHHhh--------cCCHHHHHHHHHHHHhcC
Q 003035 793 ----KNELKAAYDEMTKLLEKAQYSASAFEKRSE--------YSDREMAKNDLNMATQLD 840 (855)
Q Consensus 793 ----~g~~~~A~~~~~kal~~~p~~~~a~~~lg~--------~g~~eeA~~~~~kAl~l~ 840 (855)
..++++|+.+|+++.+ +.++.+.++||. ..|+++|..+|++|.+..
T Consensus 331 G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 331 GYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp TTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 2256666666666554 344555555555 235666666666666543
No 35
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.89 E-value=4.3e-24 Score=205.70 Aligned_cols=128 Identities=20% Similarity=0.274 Sum_probs=96.2
Q ss_pred hhcCCCCCCcEEEEEcCeEEEeeehhhhcCCHHHHHhhcCCCccCCCCeeEecCCCCCHHHHHHHHHHhccCCCCCCCHH
Q 003035 210 VCLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPG 289 (855)
Q Consensus 210 ~~~~~~~~~~V~f~v~~~~~~aHr~vLaa~S~~F~~mf~~~~~E~~~~~I~l~~~~is~~~~~~ll~y~YTg~l~~~~~~ 289 (855)
...+++..+||+|+|+|+.|+|||.||+++|+||++||.++|.|+...+|.+ +++++++|+.+|+|+|||++. ++.+
T Consensus 18 ~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l--~~~~~~~~~~~l~~~Y~~~~~-~~~~ 94 (145)
T 4eoz_A 18 GLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEI--NDVEPEVFKEMMCFIYTGKAP-NLDK 94 (145)
T ss_dssp HHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEE--CSSCHHHHHHHHHHHHHSCCT-TGGG
T ss_pred HHHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEe--cCCCHHHHHHHHHhhccCccC-CcHH
Confidence 4456677778999999999999999999999999999999999998899999 999999999999999999999 9999
Q ss_pred HHHHHHHHhchhChHHHHHHHHHHHHhhcCChhhHHHHHHHHHHhccHHHHH
Q 003035 290 IVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVA 341 (855)
Q Consensus 290 ~~~~ll~~A~~~~~~~Lk~~C~~~l~~~l~~~~n~~~~~~~A~~~~~~~L~~ 341 (855)
++.+++.+|++|+++.|+..|+++|.+.++ ++||+.++.+|..|++..|++
T Consensus 95 ~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~-~~n~~~~l~~A~~~~~~~Lk~ 145 (145)
T 4eoz_A 95 MADDLLAAADKYALERLKVMCEDALCSNLS-VENAAEILILADLHSADQLKT 145 (145)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHCC----------------------------
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCHHHhcC
Confidence 999999999999999999999999999999 999999999999999998864
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.3e-21 Score=203.68 Aligned_cols=240 Identities=14% Similarity=0.019 Sum_probs=213.6
Q ss_pred chhHHHHHHHHHHhCCHHHHHHHHHHHHccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHH
Q 003035 515 SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLV 594 (855)
Q Consensus 515 ~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~ 594 (855)
...+..+|.++...|++++|+..|+++++...++.++..+|.++..+|++++|+..+++++.++|+....
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---------- 74 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRAD---------- 74 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC----------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccc----------
Confidence 4567889999999999999999999999877667889999999999999999999999999877653100
Q ss_pred HHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 003035 595 KLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH 674 (855)
Q Consensus 595 ~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~ 674 (855)
.+..+.+++.+|.++...|++++|+..|+++++++|+
T Consensus 75 -----------------------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-- 111 (258)
T 3uq3_A 75 -----------------------------------------YKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-- 111 (258)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--
T ss_pred -----------------------------------------hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch--
Confidence 0011345678899999999999999999999999987
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHH
Q 003035 675 ERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QAL 751 (855)
Q Consensus 675 ~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~ 751 (855)
+.++...|++++|+..+++++..+|+. .+++.+|.++...|++++|+.. |++++ ...|. .++
T Consensus 112 ------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~----~~~a~-----~~~~~~~~~~ 176 (258)
T 3uq3_A 112 ------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKA----YTEMI-----KRAPEDARGY 176 (258)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHH----HHHHH-----HHCTTCHHHH
T ss_pred ------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHH----HHHHH-----hcCcccHHHH
Confidence 567788889999999999999999999 9999999999999999999999 99999 66666 899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc------cCCHHHHHHHhh
Q 003035 752 NNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKA------QYSASAFEKRSE 822 (855)
Q Consensus 752 ~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~------p~~~~a~~~lg~ 822 (855)
.++|.++...|++++|+..|+++++.+ ++.++..+|.++..+|++++|+..++++++++ |++..++..++.
T Consensus 177 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 177 SNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 999999999999999999999999998 89999999999999999999999999999999 888888776653
No 37
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.88 E-value=1.6e-21 Score=210.29 Aligned_cols=193 Identities=15% Similarity=0.079 Sum_probs=145.4
Q ss_pred HHHHHHHHc--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc
Q 003035 627 AVINQMLIN--DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE 704 (855)
Q Consensus 627 ~~~~~~l~~--~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~ 704 (855)
..+.+++.. +|+++.+++.+|.++...|++++|++.|++ |++.+++..+|.++..+|++++|++.|+++++.+
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 333444433 477777778888888888888888888877 7888888888888888888888888888888888
Q ss_pred CCh-HHHHHHH--HHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-
Q 003035 705 RTF-EAFFLKA--YILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK- 778 (855)
Q Consensus 705 p~~-~a~~~lg--~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~- 778 (855)
|+. ......+ ..+...|++++|+.. |++++ ...|+ .+++++|.++..+|++++|++.|+++++++
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~----~~~~l-----~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYI----FQEMA-----DKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHH----HHHHH-----HHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHH----HHHHH-----HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 876 3333333 333345778888888 88888 55565 788888888888888888888888888888
Q ss_pred -cHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHccCCHHHHHHHhhcCCHHHHHHHH
Q 003035 779 -HTRAHQGLARVYYLKNELKA-AYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDL 833 (855)
Q Consensus 779 -~~~a~~~lg~~~~~~g~~~~-A~~~~~kal~~~p~~~~a~~~lg~~g~~eeA~~~~ 833 (855)
++.++.++|.++..+|+..+ +.++++++++++|+++.+.......+.+++|..-|
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHc
Confidence 88888888888888887765 56788888888888888766444455555555444
No 38
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.88 E-value=2.7e-21 Score=208.55 Aligned_cols=255 Identities=13% Similarity=0.067 Sum_probs=216.7
Q ss_pred HHHHHHhCCHHHHHHHHHHHHccCCCH--hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHH
Q 003035 522 AVAKMEEGQIRAAISEIDRIIVFKLSV--DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNH 599 (855)
Q Consensus 522 a~~~~~~~~~~~A~~~~~k~l~~~p~~--~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~ 599 (855)
....+..|+|.+|+..++++...+|+. +...+++..|..+|+++.|+..++.. +|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~-------------------- 62 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SA-------------------- 62 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CC--------------------
Confidence 456778999999999999988888753 56677799999999999998755431 11
Q ss_pred HhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHH
Q 003035 600 HVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH--SSSEHERL 677 (855)
Q Consensus 600 ~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~--~p~~~~~~ 677 (855)
.+..++..++..+...|+.++|++.+++++.. +|+++.++
T Consensus 63 --------------------------------------~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~ 104 (291)
T 3mkr_A 63 --------------------------------------PELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFL 104 (291)
T ss_dssp --------------------------------------HHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHH
T ss_pred --------------------------------------hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHH
Confidence 11223344667788889999999999999876 69999999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 003035 678 VYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGS 756 (855)
Q Consensus 678 ~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~~a~~~LG~ 756 (855)
+.+|.++...|++++|++.+++ |++ .++..+|.++..+|++++|++. |++++ ..+|+....+++.
T Consensus 105 ~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~----l~~~~-----~~~p~~~~~~l~~ 170 (291)
T 3mkr_A 105 LMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKE----LKKMQ-----DQDEDATLTQLAT 170 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHH----HHHHH-----HHCTTCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHH----HHHHH-----hhCcCcHHHHHHH
Confidence 9999999999999999999998 777 9999999999999999999999 99999 6667644444443
Q ss_pred H----HHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh----cCCH
Q 003035 757 I----YVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDR 826 (855)
Q Consensus 757 ~----y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~----~g~~ 826 (855)
. +...|++++|+..|+++++.. ++.+++++|.++..+|++++|++.|+++++++|++++++.++|. .|+.
T Consensus 171 a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~ 250 (291)
T 3mkr_A 171 AWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKP 250 (291)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Confidence 3 334589999999999999998 89999999999999999999999999999999999999999998 8888
Q ss_pred HH-HHHHHHHHHhcCCCCcccchhhh
Q 003035 827 EM-AKNDLNMATQLDPLRTYPYRYRA 851 (855)
Q Consensus 827 ee-A~~~~~kAl~l~P~~~~~~~~~a 851 (855)
++ +..+++++++++|+++....+-.
T Consensus 251 ~eaa~~~~~~~~~~~P~~~~~~d~~~ 276 (291)
T 3mkr_A 251 PEVTNRYLSQLKDAHRSHPFIKEYRA 276 (291)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 76 67899999999999987766543
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.88 E-value=6.6e-21 Score=200.83 Aligned_cols=234 Identities=14% Similarity=0.111 Sum_probs=195.6
Q ss_pred hHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCCCH----hHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003035 499 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV----DCLELRAWLFIAADDYESALRDTLAL 574 (855)
Q Consensus 499 ~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~~----~~l~lra~~y~~~gd~~~A~~~~~~a 574 (855)
+|+..++++++.+|++..++..+|.++...|++++|+..+++++...+++ .++..+|.++..+|++++|+..++++
T Consensus 21 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 100 (272)
T 3u4t_A 21 EAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAA 100 (272)
T ss_dssp HHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 34445566667788888889999999999999999999999999943333 44788999999999999999999998
Q ss_pred HhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcC
Q 003035 575 LALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLN 654 (855)
Q Consensus 575 L~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g 654 (855)
+..+|+ ++.++..+|.++...|
T Consensus 101 ~~~~~~----------------------------------------------------------~~~~~~~l~~~~~~~~ 122 (272)
T 3u4t_A 101 VDRDTT----------------------------------------------------------RLDMYGQIGSYFYNKG 122 (272)
T ss_dssp HHHSTT----------------------------------------------------------CTHHHHHHHHHHHHTT
T ss_pred HhcCcc----------------------------------------------------------cHHHHHHHHHHHHHcc
Confidence 876655 3335667889999999
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCC---CchhHHHH
Q 003035 655 CQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNL---DPESSTYV 730 (855)
Q Consensus 655 ~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~---~~~A~~~~ 730 (855)
++++|+..|+++++.+|+++.+++.+|...+..+++++|+..|+++++++|++ .+++.+|.++...|+ +++|+..
T Consensus 123 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~- 201 (272)
T 3u4t_A 123 NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPY- 201 (272)
T ss_dssp CHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHH-
T ss_pred CHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHH-
Confidence 99999999999999999999999999966666779999999999999999999 999999999999999 9999999
Q ss_pred HHHHHHHhcCCCCCCC--HH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcC
Q 003035 731 IQLLEEALRCPSDGLR--KG---QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKN 794 (855)
Q Consensus 731 ~~lle~al~~~~~~~~--p~---~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g 794 (855)
|+++++....... .. .++..+|.+|...|++++|+++|+++++++ ++.++..++.+....+
T Consensus 202 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 202 ---YEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp ---HHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred ---HHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 9999844321111 11 789999999999999999999999999999 8999998888766543
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.87 E-value=2e-21 Score=199.95 Aligned_cols=195 Identities=16% Similarity=0.049 Sum_probs=153.4
Q ss_pred CCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccch
Q 003035 512 PTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSG 590 (855)
Q Consensus 512 P~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p-~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~ 590 (855)
|.++.+++.+|.++...|++++|+..|+++++.+| ++.++..+|.++..+|++++|+..++++++++|++.....
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~---- 77 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYM---- 77 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH----
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH----
Confidence 77888999999999999999999999999999999 5888999999999999999999999999999888653322
Q ss_pred hHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHH-----------HcCCHHHH
Q 003035 591 DHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLL-----------RLNCQKAA 659 (855)
Q Consensus 591 ~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~-----------~~g~~~~A 659 (855)
.+|.++. ..|++++|
T Consensus 78 ------------------------------------------------------~lg~~~~~~~~~~~~~~~~~g~~~~A 103 (217)
T 2pl2_A 78 ------------------------------------------------------VLSEAYVALYRQAEDRERGKGYLEQA 103 (217)
T ss_dssp ------------------------------------------------------HHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred ------------------------------------------------------HHHHHHHHhhhhhhhhcccccCHHHH
Confidence 2222222 34888899
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHh
Q 003035 660 MRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEAL 738 (855)
Q Consensus 660 ~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al 738 (855)
+..|+++++++|+++.+++.+|.++..+|++++|+..|+++++++ ++ .+++.+|.++...|++++|+.. |++++
T Consensus 104 ~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~----~~~al 178 (217)
T 2pl2_A 104 LSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQ----YAKAL 178 (217)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHH----HHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHH----HHHHH
Confidence 999999999999999999999999999999999999999998888 66 8888888888888888888888 88888
Q ss_pred cCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003035 739 RCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINA 774 (855)
Q Consensus 739 ~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kA 774 (855)
..+|+ .++.++|.++...|++++|+..|+++
T Consensus 179 -----~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 179 -----EQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp -----HHSTTCHHHHHHHHHHHTC--------------
T ss_pred -----HhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 77776 78888888888888888888888765
No 41
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=7.9e-20 Score=213.68 Aligned_cols=379 Identities=10% Similarity=-0.002 Sum_probs=274.7
Q ss_pred HHHHHHhcc--hhhhhhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHhhc----cCcchHHHHHHHHHHhCCCCc
Q 003035 442 FEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLY----NLGREKIVDLNYASELDPTLS 515 (855)
Q Consensus 442 ~~~Al~~~~--~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~~----~~~~~A~~~l~~a~~ldP~~~ 515 (855)
|+++|+..| ..++..++.. ...|+...|...++++++.+|.+..++...+.+ +..++|...|+++++..| +.
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~ 79 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HI 79 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CH
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-Ch
Confidence 567776654 4578888874 778999999999999999999998776555433 567899999999999999 56
Q ss_pred hhHHHHHH-HHHHhCCHHHHHH----HHHHHHc---cCC-CHhHHHHHHHHHHH---------cCCHHHHHHHHHHHHhc
Q 003035 516 FPYKYRAV-AKMEEGQIRAAIS----EIDRIIV---FKL-SVDCLELRAWLFIA---------ADDYESALRDTLALLAL 577 (855)
Q Consensus 516 ~a~~~~a~-~~~~~~~~~~A~~----~~~k~l~---~~p-~~~~l~lra~~y~~---------~gd~~~A~~~~~~aL~~ 577 (855)
..|...+. +....|++++|.+ .|++++. .+| +...+...+.+... .|+++.|...|++++.
T Consensus 80 ~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~- 158 (530)
T 2ooe_A 80 DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV- 158 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-
Confidence 67777665 4445677777765 7777765 344 34455544555544 7899999999999999
Q ss_pred CCchhhhhcccchhHHH---------HHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHc-----CCCC----
Q 003035 578 ESNYMMFHGRVSGDHLV---------KLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIN-----DPGK---- 639 (855)
Q Consensus 578 ~P~~~~~~~~~~~~~l~---------~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~-----~p~~---- 639 (855)
.|.+...........+. .++....+.+..+. ..|.. ...+...++. .|..
T Consensus 159 ~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~---~~~~~---------~~~~~~~l~~~~~~~~p~~~~~~ 226 (530)
T 2ooe_A 159 NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNAR---RVAKE---------YETVMKGLDRNAPSVPPQNTPQE 226 (530)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHH---HHHHH---------HHHHHHHCCSSSCCCCCC--CCH
T ss_pred chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHH---HHHHH---------HHHHHHHhccccccCCCCCChhH
Confidence 57542100000000000 00000001111110 00100 0111122322 2322
Q ss_pred -hHHHHHHHHHHHHc------CCH----HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-------CCCHH-------HHH
Q 003035 640 -SFLRFRQSLLLLRL------NCQ----KAAMRCLRLARNHSSSEHERLVYEGWILYD-------TGHRE-------EAL 694 (855)
Q Consensus 640 -~~~~~~~a~~l~~~------g~~----~~A~~~l~~al~~~p~~~~~~~~lg~~~~~-------~g~~~-------eAl 694 (855)
.........+.... ++. ..++..|++++..+|+++++|+.+|..+.. .|+++ +|+
T Consensus 227 ~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~ 306 (530)
T 2ooe_A 227 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 306 (530)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHH
Confidence 11112222222222 222 478899999999999999999999999986 79987 999
Q ss_pred HHHHHHHh-ccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH---HHHHHHHHHHHHcCCHHHHHH
Q 003035 695 SRAEKSIS-IERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG---QALNNLGSIYVECGKLDQAEN 769 (855)
Q Consensus 695 ~~~~kal~-~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~---~a~~~LG~~y~~~g~~~~A~~ 769 (855)
..|+++++ +.|++ .+|+.+|.++...|++++|... |++++ ...|. .+|.++|.++...|++++|.+
T Consensus 307 ~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~----~~~al-----~~~p~~~~~~~~~~~~~~~~~~~~~~A~~ 377 (530)
T 2ooe_A 307 NIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSI----YNRLL-----AIEDIDPTLVYIQYMKFARRAEGIKSGRM 377 (530)
T ss_dssp HHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHH----HHHHH-----HSSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHH----HHHHh-----CccccCchHHHHHHHHHHHHhcCHHHHHH
Confidence 99999998 89998 9999999999999999999999 99999 55553 589999999999999999999
Q ss_pred HHHHHHhcc--cHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh----cCCHHHHHHHHHHHHhcCCC
Q 003035 770 CYINALDIK--HTRAHQGLARV-YYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLDPL 842 (855)
Q Consensus 770 ~~~kAL~~~--~~~a~~~lg~~-~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~----~g~~eeA~~~~~kAl~l~P~ 842 (855)
.|++|++.. ....+...|.+ +...|++++|...|+++++..|+++.+|..++. .|+.++|+..|++|++..|.
T Consensus 378 ~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 378 IFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp HHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence 999999987 56667676766 346899999999999999999999999999998 89999999999999999876
Q ss_pred Cc
Q 003035 843 RT 844 (855)
Q Consensus 843 ~~ 844 (855)
++
T Consensus 458 ~~ 459 (530)
T 2ooe_A 458 PP 459 (530)
T ss_dssp CG
T ss_pred CH
Confidence 64
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.87 E-value=2.1e-20 Score=214.47 Aligned_cols=186 Identities=13% Similarity=0.036 Sum_probs=118.6
Q ss_pred HHHHHhhcccccchhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhhhhcH---HHHHHHHHHHHHhcchhhhhhHHHHH
Q 003035 385 YFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEY---KDACYYFEAAADAGHIYSLAGLARAK 461 (855)
Q Consensus 385 ~~La~~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~---~eA~~~~~~Al~~~~~~a~~~la~~~ 461 (855)
.-++.++...++ +++|...|+++.+.. + ..+++.||.+|...|++ ++|+.+|++|++. +..+++.+|.++
T Consensus 7 ~~la~~~~~~g~-~~~A~~~~~~aa~~g--~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 7 QRLANEALKRGD-TVTAQQNYQQLAELG--Y---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHT--C---CTGGGTCC-----------------------------CHHHHHHHH
T ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHHCC--C---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-CHHHHHHHHHHH
Confidence 446778888888 999999999987642 2 34788999999999999 9999999999988 888999999977
Q ss_pred HHhC-----ChHHHHHHHHhHHHcCCCchH-----HHHHHhhccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCH
Q 003035 462 YKVG-----QQYSAYKLINSIISEHKPTGW-----MYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQI 531 (855)
Q Consensus 462 ~~~g-----~~~~A~~~l~~~i~~~p~~~~-----~y~~~~~~~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~ 531 (855)
...| +..+|+..++++++..+..+. +|..........++...+.++.+. +++.+++.+|.+|...+.+
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~--g~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA--GYPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH--TCTTHHHHHHHHHHHHTCG
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCc
Confidence 7666 778999999999987665533 333322222235677777777654 5578999999999999966
Q ss_pred HHHHHH----HHHHHccCCCHhHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCch
Q 003035 532 RAAISE----IDRIIVFKLSVDCLELRAWLFIAAD---DYESALRDTLALLALESNY 581 (855)
Q Consensus 532 ~~A~~~----~~k~l~~~p~~~~l~lra~~y~~~g---d~~~A~~~~~~aL~~~P~~ 581 (855)
++++.. ++.+...+ +.+...+|.+|...| ++++|+..|+++....|..
T Consensus 158 ~~~~~~a~~~~~~a~~~~--~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~ 212 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTT--DICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVT 212 (452)
T ss_dssp GGGHHHHHHHHHHHTTTC--TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC
T ss_pred ccCHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH
Confidence 655554 44444444 448888899999999 9999999999888776654
No 43
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.4e-20 Score=195.65 Aligned_cols=226 Identities=14% Similarity=0.082 Sum_probs=204.0
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHH
Q 003035 548 VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLA 627 (855)
Q Consensus 548 ~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~ 627 (855)
.+.+..+|.++...|++++|+..+++++..+ +
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~----------------------------------------------- 36 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-K----------------------------------------------- 36 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-C-----------------------------------------------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-c-----------------------------------------------
Confidence 3556778999999999999999999888654 2
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 003035 628 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE-------HERLVYEGWILYDTGHREEALSRAEKS 700 (855)
Q Consensus 628 ~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~-------~~~~~~lg~~~~~~g~~~eAl~~~~ka 700 (855)
++.+++.+|.++...|++++|+..|+++++.+|+. +.+++.+|.++...|++++|+..|+++
T Consensus 37 -----------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 105 (258)
T 3uq3_A 37 -----------DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKS 105 (258)
T ss_dssp -----------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 23356778899999999999999999999999877 799999999999999999999999999
Q ss_pred HhccCChHHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 003035 701 ISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK 778 (855)
Q Consensus 701 l~~~p~~~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~ 778 (855)
+++.|+. .++...|++++|+.. +++++ ...|. .++..+|.++...|++++|+.+|+++++..
T Consensus 106 ~~~~~~~-------~~~~~~~~~~~a~~~----~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 169 (258)
T 3uq3_A 106 LTEHRTA-------DILTKLRNAEKELKK----AEAEA-----YVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA 169 (258)
T ss_dssp HHHCCCH-------HHHHHHHHHHHHHHH----HHHHH-----HCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhcCchh-------HHHHHHhHHHHHHHH----HHHHH-----HcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 9999984 445566778999999 99999 88888 899999999999999999999999999998
Q ss_pred --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh----cCCHHHHHHHHHHHHhcC------CCCccc
Q 003035 779 --HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLD------PLRTYP 846 (855)
Q Consensus 779 --~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~----~g~~eeA~~~~~kAl~l~------P~~~~~ 846 (855)
++.++.++|.++...|++++|+..++++++.+|+++.++..+|. .|++++|+..|+++++++ |++...
T Consensus 170 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~ 249 (258)
T 3uq3_A 170 PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 249 (258)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHH
Confidence 89999999999999999999999999999999999999999999 999999999999999999 776554
Q ss_pred ch
Q 003035 847 YR 848 (855)
Q Consensus 847 ~~ 848 (855)
+.
T Consensus 250 ~~ 251 (258)
T 3uq3_A 250 DQ 251 (258)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 44
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.86 E-value=1.5e-20 Score=209.44 Aligned_cols=274 Identities=17% Similarity=0.109 Sum_probs=209.9
Q ss_pred CchhHHHHHHHHHHhCCHHHHHHHHHHHHccCCC-H----hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhccc
Q 003035 514 LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-V----DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRV 588 (855)
Q Consensus 514 ~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~-~----~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~ 588 (855)
....+..+|..+...|++++|+..|++++...|. + ..+..+|.+|...|++++|+..+++++.+.+..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------- 80 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI------- 80 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc-------
Confidence 3445678899999999999999999999998885 2 467788999999999999999999998642211
Q ss_pred chhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003035 589 SGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARN 668 (855)
Q Consensus 589 ~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~ 668 (855)
...|....++..+|.++...|++++|+..++++++
T Consensus 81 ---------------------------------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 115 (406)
T 3sf4_A 81 ---------------------------------------------GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLD 115 (406)
T ss_dssp ---------------------------------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------------------------------------cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00112234566778888888888888888888888
Q ss_pred cCCCc------HHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHhcc------CCh-HHHHHHHH
Q 003035 669 HSSSE------HERLVYEGWILYDTGH--------------------REEALSRAEKSISIE------RTF-EAFFLKAY 715 (855)
Q Consensus 669 ~~p~~------~~~~~~lg~~~~~~g~--------------------~~eAl~~~~kal~~~------p~~-~a~~~lg~ 715 (855)
+.|.. ..++..+|.++...|+ +++|+..+++++++. |.. .++..+|.
T Consensus 116 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 195 (406)
T 3sf4_A 116 ISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGN 195 (406)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 76543 4477888888888888 888888888888762 223 67888888
Q ss_pred HHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--c------HHHHH
Q 003035 716 ILADTNLDPESSTYVIQLLEEALRCPSDGLRKG---QALNNLGSIYVECGKLDQAENCYINALDIK--H------TRAHQ 784 (855)
Q Consensus 716 ~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~---~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~------~~a~~ 784 (855)
++...|++++|+.. ++++++.......+. .++.++|.+|...|++++|+.+|++++++. . ..++.
T Consensus 196 ~~~~~g~~~~A~~~----~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 271 (406)
T 3sf4_A 196 THYLLGNFRDAVIA----HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCY 271 (406)
T ss_dssp HHHHHTBHHHHHHH----HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHccCHHHHHHH----HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHH
Confidence 88888888888888 888773221111111 588888888888888888888888888765 2 56788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHccCC------HHHHHHHhh----cCCHHHHHHHHHHHHhcCCCC
Q 003035 785 GLARVYYLKNELKAAYDEMTKLLEKAQYS------ASAFEKRSE----YSDREMAKNDLNMATQLDPLR 843 (855)
Q Consensus 785 ~lg~~~~~~g~~~~A~~~~~kal~~~p~~------~~a~~~lg~----~g~~eeA~~~~~kAl~l~P~~ 843 (855)
++|.++..+|++++|+..+++++++.+.. +.++..+|. .|++++|+.++++++++.+..
T Consensus 272 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 340 (406)
T 3sf4_A 272 SLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 340 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 88888888888888888888888876544 567777777 788888888888888875443
No 45
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.86 E-value=8.7e-22 Score=179.82 Aligned_cols=102 Identities=25% Similarity=0.325 Sum_probs=90.8
Q ss_pred CCCCCCcEEEEEcC----eEEEeeehhhhcCCHHHHHhhcCCCccCCCCeeEecCCCCCHHHHHHHHHHhccCCCCCCCH
Q 003035 213 SLEEDDSVTFCVRD----KEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCP 288 (855)
Q Consensus 213 ~~~~~~~V~f~v~~----~~~~aHr~vLaa~S~~F~~mf~~~~~E~~~~~I~l~~~~is~~~~~~ll~y~YTg~l~~~~~ 288 (855)
+++..+||+|+|+| ++|+|||.||+++|+||++||.++|.|+. .+|.+ +++++++|+.+|+|+|||++. ++.
T Consensus 4 ~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l--~~~~~~~f~~~l~~iYt~~~~-~~~ 79 (109)
T 2vkp_A 4 NNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHI--PDVEPAAFLILLKYMYSDEID-LEA 79 (109)
T ss_dssp TCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEE--TTSCHHHHHHHHHHHHHCCCC-CCT
T ss_pred cCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEe--CCCCHHHHHHHHHHHcCCCcc-CCH
Confidence 45667789999988 89999999999999999999999999998 89999 999999999999999999999 999
Q ss_pred HHHHHHHHHhchhChHHHHHHHHHHHHhhc
Q 003035 289 GIVLELLSFANRFCCEEMKSACDAHLASLV 318 (855)
Q Consensus 289 ~~~~~ll~~A~~~~~~~Lk~~C~~~l~~~l 318 (855)
+++.+++.+|++|+++.|+..|+++|.+.+
T Consensus 80 ~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l 109 (109)
T 2vkp_A 80 DTVLATLYAAKKYIVPALAKACVNFLETSL 109 (109)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhC
Confidence 999999999999999999999999998764
No 46
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.86 E-value=5.9e-21 Score=214.16 Aligned_cols=268 Identities=17% Similarity=0.107 Sum_probs=224.2
Q ss_pred chhHHHHHHHHHHhCCHHHHHHHHHHHHccCCC-H----hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccc
Q 003035 515 SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-V----DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS 589 (855)
Q Consensus 515 ~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~-~----~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~ 589 (855)
...+..+|..+...|++++|+..|++++...|+ + .++..+|.+|..+|++++|+..+++++.+....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-------- 119 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM-------- 119 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--------
Confidence 445667899999999999999999999998885 3 467788999999999999999999998642110
Q ss_pred hhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003035 590 GDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH 669 (855)
Q Consensus 590 ~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~ 669 (855)
..+|....+++.+|.++...|++++|+..|++++++
T Consensus 120 --------------------------------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 155 (411)
T 4a1s_A 120 --------------------------------------------NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTL 155 (411)
T ss_dssp --------------------------------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------------------------------------------cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 001223446677889999999999999999999988
Q ss_pred ------CCCcHHHHHHHHHHHHHCCC-----------------HHHHHHHHHHHHhccC------Ch-HHHHHHHHHHHH
Q 003035 670 ------SSSEHERLVYEGWILYDTGH-----------------REEALSRAEKSISIER------TF-EAFFLKAYILAD 719 (855)
Q Consensus 670 ------~p~~~~~~~~lg~~~~~~g~-----------------~~eAl~~~~kal~~~p------~~-~a~~~lg~~~~~ 719 (855)
.|....++..+|.++...|+ +++|+..+++++++.+ .. .++..+|.++..
T Consensus 156 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 235 (411)
T 4a1s_A 156 ARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYL 235 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 56677789999999999999 9999999999988742 22 688899999999
Q ss_pred CCCCchhHHHHHHHHHHHhcCCCCCCCHH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--------cHHHH
Q 003035 720 TNLDPESSTYVIQLLEEALRCPSDGLRKG--------QALNNLGSIYVECGKLDQAENCYINALDIK--------HTRAH 783 (855)
Q Consensus 720 ~g~~~~A~~~~~~lle~al~~~~~~~~p~--------~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--------~~~a~ 783 (855)
.|++++|+.. +++++ .+.+. .++.++|.+|...|++++|+..|++++++. ...++
T Consensus 236 ~g~~~~A~~~----~~~al-----~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 306 (411)
T 4a1s_A 236 LGDFQAAIEH----HQERL-----RIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSC 306 (411)
T ss_dssp TTCHHHHHHH----HHHHH-----HHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCChHHHHHH----HHHHH-----HHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999 88888 44443 488999999999999999999999999876 16788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccCC------HHHHHHHhh----cCCHHHHHHHHHHHHhcCCCC
Q 003035 784 QGLARVYYLKNELKAAYDEMTKLLEKAQYS------ASAFEKRSE----YSDREMAKNDLNMATQLDPLR 843 (855)
Q Consensus 784 ~~lg~~~~~~g~~~~A~~~~~kal~~~p~~------~~a~~~lg~----~g~~eeA~~~~~kAl~l~P~~ 843 (855)
..+|.++..+|++++|+.++++++++.++. +.++..+|. .|++++|..+|++++++.+..
T Consensus 307 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 307 YSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999886543 457888888 899999999999999987644
No 47
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.86 E-value=5.5e-21 Score=212.90 Aligned_cols=250 Identities=15% Similarity=0.076 Sum_probs=198.8
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHccC------C-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccc
Q 003035 517 PYKYRAVAKMEEGQIRAAISEIDRIIVFK------L-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS 589 (855)
Q Consensus 517 a~~~~a~~~~~~~~~~~A~~~~~k~l~~~------p-~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~ 589 (855)
.+..+|.++...|++++|+..+++++... | ...++..+|.+|..+|++++|+..+++++.+.|.....
T Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----- 123 (406)
T 3sf4_A 49 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK----- 123 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-----
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-----
Confidence 35567778888888888888888877642 1 13466778999999999999999999998765542100
Q ss_pred hhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCC--------------
Q 003035 590 GDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNC-------------- 655 (855)
Q Consensus 590 ~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~-------------- 655 (855)
+....++..+|.++...|+
T Consensus 124 -----------------------------------------------~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~ 156 (406)
T 3sf4_A 124 -----------------------------------------------VGEARALYNLGNVYHAKGKSFGCPGPQDVGEFP 156 (406)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHHHHHHHTCC-------CCCC
T ss_pred -----------------------------------------------cchHHHHHHHHHHHHHcCCcccccccchhhhhh
Confidence 0012345667777888888
Q ss_pred ------HHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-------HHHHHHHHH
Q 003035 656 ------QKAAMRCLRLARNH------SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-------EAFFLKAYI 716 (855)
Q Consensus 656 ------~~~A~~~l~~al~~------~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-------~a~~~lg~~ 716 (855)
+++|+..+++++++ .|....++..+|.++..+|++++|+..+++++++.|+. .++..+|.+
T Consensus 157 ~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 236 (406)
T 3sf4_A 157 EEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNA 236 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 99999999999886 44556788999999999999999999999999986543 489999999
Q ss_pred HHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--------cHHHHHH
Q 003035 717 LADTNLDPESSTYVIQLLEEALRCPSDGLRKG---QALNNLGSIYVECGKLDQAENCYINALDIK--------HTRAHQG 785 (855)
Q Consensus 717 ~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~---~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--------~~~a~~~ 785 (855)
+...|++++|+.. ++++++.......+. .++.++|.+|...|++++|+..|++++++. ...++..
T Consensus 237 ~~~~g~~~~A~~~----~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 312 (406)
T 3sf4_A 237 YIFLGEFETASEY----YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWS 312 (406)
T ss_dssp HHHTTCHHHHHHH----HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHcCChHHHHHH----HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 9999999999999 999883322111222 789999999999999999999999999875 2678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHccC------CHHHHHHHhh
Q 003035 786 LARVYYLKNELKAAYDEMTKLLEKAQY------SASAFEKRSE 822 (855)
Q Consensus 786 lg~~~~~~g~~~~A~~~~~kal~~~p~------~~~a~~~lg~ 822 (855)
+|.++..+|++++|+.++++++++.+. ...++..+|.
T Consensus 313 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 355 (406)
T 3sf4_A 313 LGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSD 355 (406)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence 999999999999999999999998543 3566777776
No 48
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.86 E-value=1.4e-20 Score=186.94 Aligned_cols=169 Identities=21% Similarity=0.220 Sum_probs=148.2
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHH
Q 003035 638 GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYI 716 (855)
Q Consensus 638 ~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~ 716 (855)
+++.+|+.+|.++..+|++++|++.|+++++++|+++++++.+|.++..+|++++|+..+++++...|+. .++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 4567888899999999999999999999999999999999999999999999999999999999999988 888888999
Q ss_pred HHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHH
Q 003035 717 LADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYL 792 (855)
Q Consensus 717 ~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~ 792 (855)
+...++++.|... +++++ ...|. .++..+|.+|..+|++++|++.|+++++++ ++.+++++|.+|..
T Consensus 83 ~~~~~~~~~a~~~----~~~a~-----~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~ 153 (184)
T 3vtx_A 83 NFMIDEKQAAIDA----LQRAI-----ALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG 153 (184)
T ss_dssp HHHTTCHHHHHHH----HHHHH-----HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHH----HHHHH-----HhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence 9999999988888 88888 66776 788888888888899999999998888888 88888888888888
Q ss_pred cCCHHHHHHHHHHHHHHccCCHH
Q 003035 793 KNELKAAYDEMTKLLEKAQYSAS 815 (855)
Q Consensus 793 ~g~~~~A~~~~~kal~~~p~~~~ 815 (855)
+|++++|++.|+++++++|+++.
T Consensus 154 ~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 154 KGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp TTCHHHHHHHHHHHHHTTHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCccCHH
Confidence 88888888888888888887654
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.86 E-value=5.7e-21 Score=197.31 Aligned_cols=207 Identities=16% Similarity=0.133 Sum_probs=175.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHH
Q 003035 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYIL 717 (855)
Q Consensus 639 ~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~ 717 (855)
.+..++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++.+|++ .+++.+|.++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 456778889999999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred HHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHc
Q 003035 718 ADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLK 793 (855)
Q Consensus 718 ~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~ 793 (855)
...|++++|+.. +++++ ...|. .++..+|.++...|++++|++.|+++++.. ++.++..+|.++...
T Consensus 102 ~~~~~~~~A~~~----~~~~~-----~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 172 (243)
T 2q7f_A 102 VVKEMYKEAKDM----FEKAL-----RAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANE 172 (243)
T ss_dssp HHTTCHHHHHHH----HHHHH-----HHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHH----HHHHH-----HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc
Confidence 999999999999 99999 55555 889999999999999999999999999988 899999999999999
Q ss_pred CCHHHHHHHHHHHHHHccCCHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCCcccchhhhccc
Q 003035 794 NELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLDPLRTYPYRYRAAER 854 (855)
Q Consensus 794 g~~~~A~~~~~kal~~~p~~~~a~~~lg~----~g~~eeA~~~~~kAl~l~P~~~~~~~~~a~~~ 854 (855)
|++++|+..++++++..|+++.++..+|. .|++++|+..|+++++++|++...+..++.++
T Consensus 173 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 173 GMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 99999999999999999999999999998 89999999999999999999998888877654
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.85 E-value=7e-20 Score=186.21 Aligned_cols=209 Identities=17% Similarity=0.081 Sum_probs=193.9
Q ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHH
Q 003035 635 NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLK 713 (855)
Q Consensus 635 ~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~l 713 (855)
.+|.++..++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++..|++ .+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 4577888999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHC-CCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHH
Q 003035 714 AYILADT-NLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLAR 788 (855)
Q Consensus 714 g~~~~~~-g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~ 788 (855)
|.++... |++++|+.. ++++++ ....|. .++.++|.++...|++++|+..|+++++.. ++.++..+|.
T Consensus 83 ~~~~~~~~~~~~~A~~~----~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 155 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAY----FDKALA---DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELAR 155 (225)
T ss_dssp HHHHHTTTCCHHHHHHH----HHHHHT---STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHH----HHHHHc---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 9999999 999999999 999993 113343 899999999999999999999999999998 7999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHcc-CCHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCCcccchhh
Q 003035 789 VYYLKNELKAAYDEMTKLLEKAQ-YSASAFEKRSE----YSDREMAKNDLNMATQLDPLRTYPYRYR 850 (855)
Q Consensus 789 ~~~~~g~~~~A~~~~~kal~~~p-~~~~a~~~lg~----~g~~eeA~~~~~kAl~l~P~~~~~~~~~ 850 (855)
++...|++++|+..++++++..| +++.++..++. .|+.++|..+++++.+.+|++.....+.
T Consensus 156 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 156 TKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 99999999999999999999999 99999887776 8999999999999999999987766554
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.85 E-value=3.1e-20 Score=193.57 Aligned_cols=211 Identities=16% Similarity=0.090 Sum_probs=196.0
Q ss_pred HcCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHH
Q 003035 634 INDPGK-SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFF 711 (855)
Q Consensus 634 ~~~p~~-~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~ 711 (855)
..+|.+ +..++.+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++.+|++ .+++
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 109 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLN 109 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHH
Confidence 345665 77899999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred HHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHH
Q 003035 712 LKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLA 787 (855)
Q Consensus 712 ~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg 787 (855)
.+|.++...|++++|+.. ++++++ ....|. .++..+|.++...|++++|++.|+++++.. ++.++..+|
T Consensus 110 ~la~~~~~~g~~~~A~~~----~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la 182 (252)
T 2ho1_A 110 NYGGFLYEQKRYEEAYQR----LLEASQ---DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMA 182 (252)
T ss_dssp HHHHHHHHTTCHHHHHHH----HHHHTT---CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHH----HHHHHh---CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 999999999999999999 999993 115554 899999999999999999999999999988 899999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCCcccchhhh
Q 003035 788 RVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLDPLRTYPYRYRA 851 (855)
Q Consensus 788 ~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~----~g~~eeA~~~~~kAl~l~P~~~~~~~~~a 851 (855)
.++..+|++++|+..++++++..|+++.++..++. .|++++|...++++++++|++.....++.
T Consensus 183 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 250 (252)
T 2ho1_A 183 DLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQA 250 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHh
Confidence 99999999999999999999999999999999988 89999999999999999999987766653
No 52
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.85 E-value=2.6e-20 Score=200.55 Aligned_cols=271 Identities=17% Similarity=0.108 Sum_probs=222.2
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHccCCC-----HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchh
Q 003035 517 PYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-----VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGD 591 (855)
Q Consensus 517 a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~-----~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~ 591 (855)
.+...|..+...|++++|+..|++++...|+ ...+..+|.++...|++++|+..+++++.+.+..
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---------- 76 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI---------- 76 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc----------
Confidence 4566789999999999999999999998885 2566788999999999999999999988642210
Q ss_pred HHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 003035 592 HLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS 671 (855)
Q Consensus 592 ~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p 671 (855)
...|....++..+|.++...|++++|+..+++++++.|
T Consensus 77 ------------------------------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 114 (338)
T 3ro2_A 77 ------------------------------------------GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISR 114 (338)
T ss_dssp ------------------------------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------------cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 00112234567789999999999999999999998765
Q ss_pred Cc------HHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHhcc------CCh-HHHHHHHHHHH
Q 003035 672 SE------HERLVYEGWILYDTGH--------------------REEALSRAEKSISIE------RTF-EAFFLKAYILA 718 (855)
Q Consensus 672 ~~------~~~~~~lg~~~~~~g~--------------------~~eAl~~~~kal~~~------p~~-~a~~~lg~~~~ 718 (855)
.. ..++..+|.++...|+ +++|+..+++++++. +.. .++..+|.++.
T Consensus 115 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~ 194 (338)
T 3ro2_A 115 ELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHY 194 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 43 3488999999999999 999999999998873 222 68899999999
Q ss_pred HCCCCchhHHHHHHHHHHHhcCCCCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--c------HHHHHHHH
Q 003035 719 DTNLDPESSTYVIQLLEEALRCPSDGLRKG---QALNNLGSIYVECGKLDQAENCYINALDIK--H------TRAHQGLA 787 (855)
Q Consensus 719 ~~g~~~~A~~~~~~lle~al~~~~~~~~p~---~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~------~~a~~~lg 787 (855)
..|++++|+.. ++++++.......+. .++.++|.++...|++++|+..+++++++. . ..++..+|
T Consensus 195 ~~~~~~~A~~~----~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 270 (338)
T 3ro2_A 195 LLGNFRDAVIA----HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLG 270 (338)
T ss_dssp HHTCHHHHHHH----HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhCCHHHHHHH----HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 99999999999 988883221111111 599999999999999999999999999876 2 67899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHccCC------HHHHHHHhh----cCCHHHHHHHHHHHHhcCCCC
Q 003035 788 RVYYLKNELKAAYDEMTKLLEKAQYS------ASAFEKRSE----YSDREMAKNDLNMATQLDPLR 843 (855)
Q Consensus 788 ~~~~~~g~~~~A~~~~~kal~~~p~~------~~a~~~lg~----~g~~eeA~~~~~kAl~l~P~~ 843 (855)
.++..+|++++|+..++++++..+.. ..++..+|. .|++++|..++++++++.+..
T Consensus 271 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 271 NTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999986643 557888888 999999999999999987754
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.85 E-value=2.4e-19 Score=189.99 Aligned_cols=234 Identities=13% Similarity=0.032 Sum_probs=200.2
Q ss_pred CCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCCCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCchhhhhc
Q 003035 511 DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIA----ADDYESALRDTLALLALESNYMMFHG 586 (855)
Q Consensus 511 dP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~~~~l~lra~~y~~----~gd~~~A~~~~~~aL~~~P~~~~~~~ 586 (855)
+|+++.+++.+|.++...|++++|+..|++++.. .++.++..+|.+|.. .+++++|+..|++++..+
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-------- 72 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL-KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-------- 72 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--------
Confidence 5788889999999999999999999999999982 246778888999999 999999999988887532
Q ss_pred ccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHH----cCCHHHHHHH
Q 003035 587 RVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLR----LNCQKAAMRC 662 (855)
Q Consensus 587 ~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~----~g~~~~A~~~ 662 (855)
++.+++.+|.++.. .+++++|+..
T Consensus 73 ----------------------------------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~ 100 (273)
T 1ouv_A 73 ----------------------------------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQY 100 (273)
T ss_dssp ----------------------------------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred ----------------------------------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHH
Confidence 22345667888888 9999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhccCChHHHHHHHHHHHH----CCCCchhHHHHHHHH
Q 003035 663 LRLARNHSSSEHERLVYEGWILYD----TGHREEALSRAEKSISIERTFEAFFLKAYILAD----TNLDPESSTYVIQLL 734 (855)
Q Consensus 663 l~~al~~~p~~~~~~~~lg~~~~~----~g~~~eAl~~~~kal~~~p~~~a~~~lg~~~~~----~g~~~~A~~~~~~ll 734 (855)
|+++++.+ ++.+++.+|.++.. .+++++|+..|+++++.. +..+++.+|.+|.. .+++++|+.. |
T Consensus 101 ~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~~~~~~~~~A~~~----~ 173 (273)
T 1ouv_A 101 YSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-DGDGCTILGSLYDAGRGTPKDLKKALAS----Y 173 (273)
T ss_dssp HHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHH----H
T ss_pred HHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-cHHHHHHHHHHHHcCCCCCCCHHHHHHH----H
Confidence 99999874 78999999999999 999999999999999875 22788999999998 8999999999 9
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 003035 735 EEALRCPSDGLRKGQALNNLGSIYVE----CGKLDQAENCYINALDIKHTRAHQGLARVYYL----KNELKAAYDEMTKL 806 (855)
Q Consensus 735 e~al~~~~~~~~p~~a~~~LG~~y~~----~g~~~~A~~~~~kAL~~~~~~a~~~lg~~~~~----~g~~~~A~~~~~ka 806 (855)
++++ ...+..++.++|.+|.. .+++++|+++|+++++..++.+++++|.++.. .+++++|+++|+++
T Consensus 174 ~~a~-----~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a 248 (273)
T 1ouv_A 174 DKAC-----DLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKG 248 (273)
T ss_dssp HHHH-----HTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHH
T ss_pred HHHH-----HCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence 9999 55555889999999999 99999999999999998888899999999998 89999999999999
Q ss_pred HHHccCCHHHH
Q 003035 807 LEKAQYSASAF 817 (855)
Q Consensus 807 l~~~p~~~~a~ 817 (855)
++..|+++..+
T Consensus 249 ~~~~~~~a~~~ 259 (273)
T 1ouv_A 249 CKLGAKGACDI 259 (273)
T ss_dssp HHHTCHHHHHH
T ss_pred HHcCCHHHHHH
Confidence 99988755544
No 54
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.85 E-value=2.7e-20 Score=208.73 Aligned_cols=279 Identities=13% Similarity=0.030 Sum_probs=225.3
Q ss_pred hhhhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHhhccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHH
Q 003035 453 SLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIR 532 (855)
Q Consensus 453 a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~~~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~ 532 (855)
.+..+|..+...|++++|+..++++++..|++.... ..++..+|.++...|+++
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------------------~~~~~~lg~~~~~~g~~~ 103 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTL--------------------------SAIYSQLGNAYFYLGDYN 103 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHH--------------------------HHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHH--------------------------HHHHHHHHHHHHHCCCHH
Confidence 456678888888988888877777766655543211 135678899999999999
Q ss_pred HHHHHHHHHHcc------CC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccC
Q 003035 533 AAISEIDRIIVF------KL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWS 605 (855)
Q Consensus 533 ~A~~~~~k~l~~------~p-~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~ 605 (855)
+|+..+++++.. .| ...++..+|.+|..+|++++|+..+++++.+.+..
T Consensus 104 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------------------------ 159 (411)
T 4a1s_A 104 KAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL------------------------ 159 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------------------
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh------------------------
Confidence 999999999976 23 24677788999999999999999999998643221
Q ss_pred hhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHh
Q 003035 606 PADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNC-----------------QKAAMRCLRLARN 668 (855)
Q Consensus 606 ~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~-----------------~~~A~~~l~~al~ 668 (855)
...|....++..+|.++...|+ +++|+..++++++
T Consensus 160 ----------------------------~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 160 ----------------------------GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp ----------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------hchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 0011223456778888889999 9999999999988
Q ss_pred cC------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-------HHHHHHHHHHHHCCCCchhHHHHHHHHH
Q 003035 669 HS------SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-------EAFFLKAYILADTNLDPESSTYVIQLLE 735 (855)
Q Consensus 669 ~~------p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-------~a~~~lg~~~~~~g~~~~A~~~~~~lle 735 (855)
+. |....++..+|.++...|++++|+..+++++++.|.. .++..+|.+|...|++++|+.. ++
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~----~~ 287 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH----YK 287 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH----HH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH----HH
Confidence 64 3455688999999999999999999999999987754 3899999999999999999999 99
Q ss_pred HHhcCCCCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--------cHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003035 736 EALRCPSDGLRKG---QALNNLGSIYVECGKLDQAENCYINALDIK--------HTRAHQGLARVYYLKNELKAAYDEMT 804 (855)
Q Consensus 736 ~al~~~~~~~~p~---~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--------~~~a~~~lg~~~~~~g~~~~A~~~~~ 804 (855)
++++.......+. .++.++|.+|...|++++|+.+|++++++. ...++..+|.++..+|++++|+.+++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 8883222111111 789999999999999999999999999885 25689999999999999999999999
Q ss_pred HHHHHccCC
Q 003035 805 KLLEKAQYS 813 (855)
Q Consensus 805 kal~~~p~~ 813 (855)
+++++.+..
T Consensus 368 ~al~~~~~~ 376 (411)
T 4a1s_A 368 QHLQLAXXX 376 (411)
T ss_dssp HHHHHCCHH
T ss_pred HHHHHHhhc
Confidence 999997653
No 55
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.85 E-value=2e-21 Score=180.66 Aligned_cols=102 Identities=23% Similarity=0.224 Sum_probs=92.3
Q ss_pred hhcCCCCCCcEEEEEcCeEEEeeehhhhcCCHHHHHhhcCCCccCCCCeeEecCCCCCHHHHHHHHHHhccCCCCCCCHH
Q 003035 210 VCLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPG 289 (855)
Q Consensus 210 ~~~~~~~~~~V~f~v~~~~~~aHr~vLaa~S~~F~~mf~~~~~E~~~~~I~l~~~~is~~~~~~ll~y~YTg~l~~~~~~ 289 (855)
+..+++..+||+|+|+|++|+|||+||+++|+||++||.++|.|+...+|++ +++++++|+.+|+|+|||++. ++.+
T Consensus 18 ~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l--~~~~~~~f~~ll~~~Yt~~~~-~~~~ 94 (120)
T 2if5_A 18 EQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEI--DFVSAEALTALMDFAYTATLT-VSTA 94 (120)
T ss_dssp HHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEEC--CSSCHHHHHHHHHHHHHSCCC-CCGG
T ss_pred HHHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEe--CCCCHHHHHHHHHHHcCCCCc-cCHH
Confidence 3456677788999999999999999999999999999999999999999999 999999999999999999999 9999
Q ss_pred HHHHHHHHhchhChHHHHHHHHHHH
Q 003035 290 IVLELLSFANRFCCEEMKSACDAHL 314 (855)
Q Consensus 290 ~~~~ll~~A~~~~~~~Lk~~C~~~l 314 (855)
++.+++.+|++|+++.|+..|+++|
T Consensus 95 ~~~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 95 NVGDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp GHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 9999999999999999999999997
No 56
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.84 E-value=3.1e-20 Score=184.44 Aligned_cols=164 Identities=16% Similarity=0.090 Sum_probs=157.3
Q ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--
Q 003035 672 SEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG-- 748 (855)
Q Consensus 672 ~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~-- 748 (855)
+++.+|+.+|.++..+|++++|+..|+++++++|++ .+++.+|.+|...|++++|+.. +++++ ...|.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~----~~~~~-----~~~~~~~ 73 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIES----LKKFV-----VLDTTSA 73 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH----HHHHH-----HHCCCCH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH----HHHHH-----hcCchhH
Confidence 568899999999999999999999999999999999 9999999999999999999999 99999 66666
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh----
Q 003035 749 QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE---- 822 (855)
Q Consensus 749 ~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~---- 822 (855)
.++..+|.++...++++.|.+.+.+++++. +..++..+|.++..+|++++|++.|+++++++|+++.++..+|.
T Consensus 74 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~ 153 (184)
T 3vtx_A 74 EAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG 153 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence 899999999999999999999999999998 89999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCc
Q 003035 823 YSDREMAKNDLNMATQLDPLRT 844 (855)
Q Consensus 823 ~g~~eeA~~~~~kAl~l~P~~~ 844 (855)
.|++++|+..|++|++++|+++
T Consensus 154 ~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 154 KGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp TTCHHHHHHHHHHHHHTTHHHH
T ss_pred CCCHHHHHHHHHHHHhCCccCH
Confidence 9999999999999999999874
No 57
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.84 E-value=4.7e-19 Score=187.76 Aligned_cols=225 Identities=17% Similarity=0.129 Sum_probs=203.2
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchH
Q 003035 547 SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSL 626 (855)
Q Consensus 547 ~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al 626 (855)
++.++..+|.++...|++++|+..|++++. |+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~---------------------------------------------- 36 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD--LK---------------------------------------------- 36 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TT----------------------------------------------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CC----------------------------------------------
Confidence 467788889999999999999999988875 22
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----CCCHHHHHHHHH
Q 003035 627 AVINQMLINDPGKSFLRFRQSLLLLR----LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYD----TGHREEALSRAE 698 (855)
Q Consensus 627 ~~~~~~l~~~p~~~~~~~~~a~~l~~----~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~----~g~~~eAl~~~~ 698 (855)
++.+++.+|.++.. .+++++|+..|+++++.+ ++.+++.+|.++.. .+++++|+..|+
T Consensus 37 ------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~ 102 (273)
T 1ouv_A 37 ------------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYS 102 (273)
T ss_dssp ------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred ------------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHH
Confidence 22345677888888 999999999999999986 79999999999999 999999999999
Q ss_pred HHHhccCCh-HHHHHHHHHHHH----CCCCchhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH----cCCHHHHHH
Q 003035 699 KSISIERTF-EAFFLKAYILAD----TNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVE----CGKLDQAEN 769 (855)
Q Consensus 699 kal~~~p~~-~a~~~lg~~~~~----~g~~~~A~~~~~~lle~al~~~~~~~~p~~a~~~LG~~y~~----~g~~~~A~~ 769 (855)
++++.. + .+++.+|.+|.. .+++++|+.. |++++ ...+..+++++|.+|.. .+++++|+.
T Consensus 103 ~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~----~~~a~-----~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~ 171 (273)
T 1ouv_A 103 KACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEY----FTKAC-----DLNDGDGCTILGSLYDAGRGTPKDLKKALA 171 (273)
T ss_dssp HHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHH----HHHHH-----HTTCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHH----HHHHH-----hcCcHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 999984 5 999999999999 9999999999 99999 66666899999999999 999999999
Q ss_pred HHHHHHhcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHccCCHHHHHHHhh--------cCCHHHHHHHHHHHH
Q 003035 770 CYINALDIKHTRAHQGLARVYYL----KNELKAAYDEMTKLLEKAQYSASAFEKRSE--------YSDREMAKNDLNMAT 837 (855)
Q Consensus 770 ~~~kAL~~~~~~a~~~lg~~~~~----~g~~~~A~~~~~kal~~~p~~~~a~~~lg~--------~g~~eeA~~~~~kAl 837 (855)
+|+++++..++.+++++|.+|.. .+++++|+++|+++++..| +.+++.+|. .+++++|+.+|++|+
T Consensus 172 ~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~ 249 (273)
T 1ouv_A 172 SYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGC 249 (273)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence 99999999999999999999999 9999999999999999865 888888888 579999999999999
Q ss_pred hcCCCCccc
Q 003035 838 QLDPLRTYP 846 (855)
Q Consensus 838 ~l~P~~~~~ 846 (855)
+++|++...
T Consensus 250 ~~~~~~a~~ 258 (273)
T 1ouv_A 250 KLGAKGACD 258 (273)
T ss_dssp HHTCHHHHH
T ss_pred HcCCHHHHH
Confidence 999987543
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.84 E-value=6.4e-20 Score=197.44 Aligned_cols=279 Identities=14% Similarity=0.064 Sum_probs=218.7
Q ss_pred hhhhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHhhccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHH
Q 003035 453 SLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIR 532 (855)
Q Consensus 453 a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~~~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~ 532 (855)
.+...|..+...|++++|+..++++++..|++.... ...+..+|.++...|+++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------------------~~~~~~l~~~~~~~g~~~ 60 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTL--------------------------SAIYSQLGNAYFYLHDYA 60 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHH--------------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHH--------------------------HHHHHHHHHHHHHcCCHH
Confidence 455667888888888888777777666655543211 235677899999999999
Q ss_pred HHHHHHHHHHccC------C-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccC
Q 003035 533 AAISEIDRIIVFK------L-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWS 605 (855)
Q Consensus 533 ~A~~~~~k~l~~~------p-~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~ 605 (855)
+|+..+++++... | ....+..+|.+|..+|++++|+..+++++.+.|.....
T Consensus 61 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------------- 119 (338)
T 3ro2_A 61 KALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK--------------------- 119 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---------------------
T ss_pred HHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCc---------------------
Confidence 9999999998752 2 14567788999999999999999999999765432100
Q ss_pred hhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCC--------------------HHHHHHHHHH
Q 003035 606 PADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNC--------------------QKAAMRCLRL 665 (855)
Q Consensus 606 ~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~--------------------~~~A~~~l~~ 665 (855)
+....++..+|.++...|+ +++|+..+++
T Consensus 120 -------------------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 120 -------------------------------VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred -------------------------------hHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 0012345566777778888 9999999999
Q ss_pred HHhc------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-------HHHHHHHHHHHHCCCCchhHHHHHH
Q 003035 666 ARNH------SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-------EAFFLKAYILADTNLDPESSTYVIQ 732 (855)
Q Consensus 666 al~~------~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-------~a~~~lg~~~~~~g~~~~A~~~~~~ 732 (855)
+++. .|....++..+|.++...|++++|+..+++++++.+.. .++..+|.++...|++++|+..
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~--- 245 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY--- 245 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH---
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH---
Confidence 8876 34456688999999999999999999999999886543 4899999999999999999999
Q ss_pred HHHHHhcCCCCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--------cHHHHHHHHHHHHHcCCHHHHHH
Q 003035 733 LLEEALRCPSDGLRKG---QALNNLGSIYVECGKLDQAENCYINALDIK--------HTRAHQGLARVYYLKNELKAAYD 801 (855)
Q Consensus 733 lle~al~~~~~~~~p~---~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--------~~~a~~~lg~~~~~~g~~~~A~~ 801 (855)
++++++.......+. .++..+|.++...|++++|+..|++++++. ...++..+|.++..+|++++|+.
T Consensus 246 -~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 246 -YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp -HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred -HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 888883322111222 789999999999999999999999999875 25688999999999999999999
Q ss_pred HHHHHHHHccCC
Q 003035 802 EMTKLLEKAQYS 813 (855)
Q Consensus 802 ~~~kal~~~p~~ 813 (855)
.+++++++.++.
T Consensus 325 ~~~~a~~~~~~~ 336 (338)
T 3ro2_A 325 FAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHC----
T ss_pred HHHHHHHHHHhh
Confidence 999999987753
No 59
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.82 E-value=4.7e-21 Score=182.76 Aligned_cols=108 Identities=17% Similarity=0.138 Sum_probs=99.3
Q ss_pred hhcCCCCCCcEEEEEcCeEEEeeehhhhcCCHHHHHhhcCCCccCCCCeeEecCC-CCCHHHHHHHHHHhccCCCCCCCH
Q 003035 210 VCLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHD-GVSVEGLRAVEVYTRTSRVDLFCP 288 (855)
Q Consensus 210 ~~~~~~~~~~V~f~v~~~~~~aHr~vLaa~S~~F~~mf~~~~~E~~~~~I~l~~~-~is~~~~~~ll~y~YTg~l~~~~~ 288 (855)
+...++..+||+|+|+|++|+|||+||+++|+||++||.++|.|+ .+|.+ + ++++++|+.+|+|+|||++. ++.
T Consensus 29 ~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~--~~i~l--~~~v~~~~~~~lL~~~Ytg~~~-i~~ 103 (138)
T 2z8h_A 29 DQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAE--LTVTL--PEEVTVKGFEPLIQFAYTAKLI-LSK 103 (138)
T ss_dssp HHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCTT--EEEEC--CTTSCHHHHHHHHHHHHHSCCC-CCT
T ss_pred HHHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCCC--ceEEe--CCCCCHHHHHHHHHHhcCCCcc-cCH
Confidence 344567777899999999999999999999999999999999874 47888 5 89999999999999999999 999
Q ss_pred HHHHHHHHHhchhChHHHHHHHHHHHHhhcCChhh
Q 003035 289 GIVLELLSFANRFCCEEMKSACDAHLASLVGDIED 323 (855)
Q Consensus 289 ~~~~~ll~~A~~~~~~~Lk~~C~~~l~~~l~~~~n 323 (855)
+++.+|+.+|++|+++.|+..|++||.+.++ .+|
T Consensus 104 ~~v~~ll~~A~~~~i~~L~~~C~~~l~~~l~-~sn 137 (138)
T 2z8h_A 104 DNVDEVCRCVEFLSVHNIEESCFQFLKFKFL-DST 137 (138)
T ss_dssp TTHHHHHHHHHHHTCGGGHHHHHHHTTCCCS-CCC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-ccc
Confidence 9999999999999999999999999999998 665
No 60
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.82 E-value=8e-21 Score=182.34 Aligned_cols=103 Identities=16% Similarity=0.218 Sum_probs=91.3
Q ss_pred hhcCCCCCCcEEEEEcCeEEEeeehhhhcCCHHHHHhhcCCCcc--CCCCeeEecCCCCCHHHHHHHHHHhccCCCCCCC
Q 003035 210 VCLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVE--SKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFC 287 (855)
Q Consensus 210 ~~~~~~~~~~V~f~v~~~~~~aHr~vLaa~S~~F~~mf~~~~~E--~~~~~I~l~~~~is~~~~~~ll~y~YTg~l~~~~ 287 (855)
+...++..+||+|+|+|++|+|||+||+++|+||++||.++|.| +...+|.| +++++++|+.+|+|+|||++. ++
T Consensus 40 ~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l--~~v~~~~f~~lL~fiYtg~~~-i~ 116 (144)
T 2ppi_A 40 SFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIEL--EGISVMVMREILDYIFSGQIR-LN 116 (144)
T ss_dssp HTTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEEC--CSSCHHHHHHHHHHHTTSCCC-CC
T ss_pred HHHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEe--CCCCHHHHHHHHHHHhCCCCC-CC
Confidence 34566777789999999999999999999999999999999886 56678999 999999999999999999999 99
Q ss_pred HHHHHHHHHHhchhChHHHHHHHHHHHH
Q 003035 288 PGIVLELLSFANRFCCEEMKSACDAHLA 315 (855)
Q Consensus 288 ~~~~~~ll~~A~~~~~~~Lk~~C~~~l~ 315 (855)
.+++.+|+.+|++|+++.|++.|++||+
T Consensus 117 ~~~v~~ll~~A~~l~i~~L~~~C~~~L~ 144 (144)
T 2ppi_A 117 EDTIQDVVQAADLLLLTDLKTLCCEFLE 144 (144)
T ss_dssp TTTHHHHHHHHHHTTCHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHhC
Confidence 9999999999999999999999999863
No 61
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.82 E-value=2.4e-19 Score=185.05 Aligned_cols=177 Identities=18% Similarity=0.163 Sum_probs=151.5
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHH
Q 003035 637 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAY 715 (855)
Q Consensus 637 p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~ 715 (855)
|.+...++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++..|++ .+++.+|.
T Consensus 54 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 133 (243)
T 2q7f_A 54 KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGT 133 (243)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 33344556677788888888888888888888888888888888888888888888888888888888888 88888888
Q ss_pred HHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHH
Q 003035 716 ILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYY 791 (855)
Q Consensus 716 ~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~ 791 (855)
++...|++++|+.. +++++ ...|. .++..+|.++...|++++|+..|+++++.. ++.++..+|.++.
T Consensus 134 ~~~~~~~~~~A~~~----~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 204 (243)
T 2q7f_A 134 VLVKLEQPKLALPY----LQRAV-----ELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYA 204 (243)
T ss_dssp HHHHTSCHHHHHHH----HHHHH-----HHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHH----HHHHH-----HhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 88888888888888 88888 55555 788888999999999999999999998887 7889999999999
Q ss_pred HcCCHHHHHHHHHHHHHHccCCHHHHHHHhh
Q 003035 792 LKNELKAAYDEMTKLLEKAQYSASAFEKRSE 822 (855)
Q Consensus 792 ~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~ 822 (855)
.+|++++|+..++++++++|+++.++..++.
T Consensus 205 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 235 (243)
T 2q7f_A 205 YKENREKALEMLDKAIDIQPDHMLALHAKKL 235 (243)
T ss_dssp HTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC
T ss_pred HccCHHHHHHHHHHHHccCcchHHHHHHHHH
Confidence 9999999999999999999999999888876
No 62
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.82 E-value=1.7e-20 Score=176.22 Aligned_cols=104 Identities=14% Similarity=0.227 Sum_probs=96.5
Q ss_pred hhcCCCCCCcEEEEEcCeEEEeeehhhhcCCHHHHHhhcCCCccCCCCeeEecCCCCCHHHHHHHHHHhccCCCCCCCHH
Q 003035 210 VCLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPG 289 (855)
Q Consensus 210 ~~~~~~~~~~V~f~v~~~~~~aHr~vLaa~S~~F~~mf~~~~~E~~~~~I~l~~~~is~~~~~~ll~y~YTg~l~~~~~~ 289 (855)
+...++..+||+|+|+|++|+|||+||+++|+||++||.++|.| ...+|+|+ +++++++|+.+|+|+|||++. ++.+
T Consensus 22 ~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e-~~~~i~l~-~~~~~~~f~~ll~~~Ytg~~~-~~~~ 98 (127)
T 1r29_A 22 RLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR-NLSVINLD-PEINPEGFNILLDFMYTSRLN-LREG 98 (127)
T ss_dssp HHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTT-TCSEEECC-TTSCHHHHHHHHHHHHHSCCC-CCTT
T ss_pred HHHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccC-CCCEEEeC-CCCCHHHHHHHHHHHcCCCcC-cCHH
Confidence 34566777789999999999999999999999999999999999 67788884 689999999999999999999 9999
Q ss_pred HHHHHHHHhchhChHHHHHHHHHHHHh
Q 003035 290 IVLELLSFANRFCCEEMKSACDAHLAS 316 (855)
Q Consensus 290 ~~~~ll~~A~~~~~~~Lk~~C~~~l~~ 316 (855)
++.+++.+|++|+++.|++.|+++|.+
T Consensus 99 ~~~~ll~~A~~~~i~~L~~~c~~~l~~ 125 (127)
T 1r29_A 99 NIMAVMATAMYLQMEHVVDTCRKFIKA 125 (127)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 999999999999999999999999975
No 63
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.82 E-value=1.7e-19 Score=189.92 Aligned_cols=241 Identities=12% Similarity=-0.008 Sum_probs=183.0
Q ss_pred HHHhCCHHHHHHHHHHHHccCC-----CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHH
Q 003035 525 KMEEGQIRAAISEIDRIIVFKL-----SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNH 599 (855)
Q Consensus 525 ~~~~~~~~~A~~~~~k~l~~~p-----~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~ 599 (855)
+...+++++|+..+++++...+ .+..+..+|.++...|++++|+..+++++..+|+
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------------------- 75 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD------------------- 75 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------------------
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-------------------
Confidence 3446788888888888887632 2456777888888899999888888887766554
Q ss_pred HhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 003035 600 HVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVY 679 (855)
Q Consensus 600 ~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~ 679 (855)
++.+++.+|.++...|++++|+..|+++++.+|+++.+++.
T Consensus 76 ---------------------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 116 (275)
T 1xnf_A 76 ---------------------------------------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLN 116 (275)
T ss_dssp ---------------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred ---------------------------------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHH
Confidence 33345667788888888999999999999988888888888
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH-HHHHHHHHH
Q 003035 680 EGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG-QALNNLGSI 757 (855)
Q Consensus 680 lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~-~a~~~LG~~ 757 (855)
+|.++...|++++|+..|++++++.|++ ......+.. ...|++++|+.. +++++ ...|. .....++.+
T Consensus 117 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~----~~~~~-----~~~~~~~~~~~~~~~ 186 (275)
T 1xnf_A 117 RGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEV----LKQHF-----EKSDKEQWGWNIVEF 186 (275)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHH----HHHHH-----HHSCCCSTHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHH----HHHHH-----hcCCcchHHHHHHHH
Confidence 9999999999999999999999888888 554444443 556888888888 88887 33333 233447777
Q ss_pred HHHcCCHHHHHHHHHHHHhcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh-cCCHHHHH
Q 003035 758 YVECGKLDQAENCYINALDIK------HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE-YSDREMAK 830 (855)
Q Consensus 758 y~~~g~~~~A~~~~~kAL~~~------~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~-~g~~eeA~ 830 (855)
+...++.++|++.++++++.. ++.++..+|.++..+|++++|+..|+++++.+|++...+...-. .|++++|+
T Consensus 187 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~l~~~~~a~ 266 (275)
T 1xnf_A 187 YLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQ 266 (275)
T ss_dssp HTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHC-
T ss_pred HHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhH
Confidence 788888888999888888776 26788899999999999999999999999998877555432222 88888888
Q ss_pred HHH
Q 003035 831 NDL 833 (855)
Q Consensus 831 ~~~ 833 (855)
+.+
T Consensus 267 ~~~ 269 (275)
T 1xnf_A 267 DDL 269 (275)
T ss_dssp ---
T ss_pred HHH
Confidence 877
No 64
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.82 E-value=8.4e-21 Score=176.17 Aligned_cols=100 Identities=13% Similarity=0.035 Sum_probs=91.2
Q ss_pred hcCCCCCCcEEEEEcCeEEEeeehhhhcCCHHHHHhhcCCCccCCCCeeEecCCCCCHHHHHHHHHHhccCCCCCCCHHH
Q 003035 211 CLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGI 290 (855)
Q Consensus 211 ~~~~~~~~~V~f~v~~~~~~aHr~vLaa~S~~F~~mf~~~~~E~~~~~I~l~~~~is~~~~~~ll~y~YTg~l~~~~~~~ 290 (855)
...++..+||+|+|+|++|+|||+||+++|+||++||.+++ ..+|+| +++++++|+.+|+|+|||++. ++.++
T Consensus 18 l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~----~~~i~l--~~~~~~~f~~ll~~iYtg~~~-~~~~~ 90 (119)
T 3b84_A 18 QREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS----GGSVVL--PAGFAEIFGLLLDFFYTGHLA-LTSGN 90 (119)
T ss_dssp HHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT----CCCEEE--CGGGHHHHHHHHHHHHHSCCC-CCTTT
T ss_pred HHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC----CCeEEe--CCCCHHHHHHHHHHHcCCCCc-cCHHH
Confidence 34567777899999999999999999999999999999887 568999 999999999999999999999 99999
Q ss_pred HHHHHHHhchhChHHHHHHHHHHHHhh
Q 003035 291 VLELLSFANRFCCEEMKSACDAHLASL 317 (855)
Q Consensus 291 ~~~ll~~A~~~~~~~Lk~~C~~~l~~~ 317 (855)
+.+++.+|++|+++.|++.|++||.+.
T Consensus 91 v~~ll~~A~~~~i~~L~~~C~~~l~~~ 117 (119)
T 3b84_A 91 RDQVLLAARELRVPEAVELCQSFKPKT 117 (119)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHCC---
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHc
Confidence 999999999999999999999998753
No 65
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.81 E-value=3.2e-20 Score=172.77 Aligned_cols=101 Identities=17% Similarity=0.133 Sum_probs=93.1
Q ss_pred hhcCCCCCCcEEEEEcCeEEEeeehhhhcCCHHHHHhhcCCCccCCCCeeEecCCCCCHHHHHHHHHHhccCCCCCCCHH
Q 003035 210 VCLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPG 289 (855)
Q Consensus 210 ~~~~~~~~~~V~f~v~~~~~~aHr~vLaa~S~~F~~mf~~~~~E~~~~~I~l~~~~is~~~~~~ll~y~YTg~l~~~~~~ 289 (855)
+...++..+||+|+|+|++|+|||.||+++|+||++||.++ ..+|++ +++++++|+.+|+|+|||++. ++.+
T Consensus 21 ~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~-----~~~i~l--~~~~~~~f~~ll~~~Ytg~~~-~~~~ 92 (121)
T 1buo_A 21 QMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN-----SQHYTL--DFLSPKTFQQILEYAYTATLQ-AKAE 92 (121)
T ss_dssp HHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC-----CSEEEE--CSSCHHHHHHHHHHHHHSCCC-CCGG
T ss_pred HHHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCC-----CcEEEe--CCCCHHHHHHHHHhhcCCCcC-CCHH
Confidence 34456777789999999999999999999999999999864 458999 999999999999999999999 9999
Q ss_pred HHHHHHHHhchhChHHHHHHHHHHHHhhc
Q 003035 290 IVLELLSFANRFCCEEMKSACDAHLASLV 318 (855)
Q Consensus 290 ~~~~ll~~A~~~~~~~Lk~~C~~~l~~~l 318 (855)
++.+++.+|++|+++.|+..|+++|.+.|
T Consensus 93 ~~~~ll~~A~~~~i~~L~~~c~~~l~~~I 121 (121)
T 1buo_A 93 DLDDLLYAAEILEIEYLEEQCLKMLETIQ 121 (121)
T ss_dssp GHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999998754
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.81 E-value=1.7e-19 Score=208.12 Aligned_cols=200 Identities=12% Similarity=0.025 Sum_probs=189.0
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc
Q 003035 626 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQ-KAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE 704 (855)
Q Consensus 626 l~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~-~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~ 704 (855)
+..+.......|.++..++.+|.++...|++ ++|++.|+++++++|+++++++.+|.++..+|++++|+..|+++++++
T Consensus 88 l~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~ 167 (474)
T 4abn_A 88 LQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC 167 (474)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4556677788899999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHC---------CCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHc--------CCHH
Q 003035 705 RTFEAFFLKAYILADT---------NLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVEC--------GKLD 765 (855)
Q Consensus 705 p~~~a~~~lg~~~~~~---------g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~--------g~~~ 765 (855)
|+..+++.+|.++... |++++|+.. |++++ .++|+ .+|+++|.+|... |+++
T Consensus 168 p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~----~~~al-----~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 168 KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQ----AKLAV-----QMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHH----HHHHH-----HHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHH----HHHHH-----HhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9989999999999999 999999999 99999 88887 9999999999999 9999
Q ss_pred HHHHHHHHHHhcc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh----cCCHHHHHHHHH
Q 003035 766 QAENCYINALDIK-----HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLN 834 (855)
Q Consensus 766 ~A~~~~~kAL~~~-----~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~----~g~~eeA~~~~~ 834 (855)
+|+++|+++++++ ++.+++++|.++..+|++++|++.|+++++++|+++.++..++. .|++++|+..+.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999975 78999999999999999999999999999999999999999998 888888887553
No 67
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.81 E-value=3.3e-20 Score=171.35 Aligned_cols=101 Identities=17% Similarity=0.193 Sum_probs=90.7
Q ss_pred hcCCCCCCcEEEEEcCeEEEeeehhhhcCCHHHHHhhcCCCccCCCCeeEecCCCCCHHHHHHHHHHhccCCCCCCCHHH
Q 003035 211 CLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGI 290 (855)
Q Consensus 211 ~~~~~~~~~V~f~v~~~~~~aHr~vLaa~S~~F~~mf~~~~~E~~~~~I~l~~~~is~~~~~~ll~y~YTg~l~~~~~~~ 290 (855)
...++..+||+|+|+|++|+|||.||+++|+||++||.++ .+.+|.|..+++++++|+.+|+|+|||++. ++.++
T Consensus 16 l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~----~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~-~~~~~ 90 (116)
T 2vpk_A 16 QREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST----SENNVFLDQSQVKADGFQKLLEFIYTGTLN-LDSWN 90 (116)
T ss_dssp HHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC----CCSCEECCTTTCCHHHHHHHHHHHHHSCCC-CCTTT
T ss_pred HHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC----CCCeEEeecCCCCHHHHHHHHHHHcCCCcc-cCHHH
Confidence 3456677789999999999999999999999999999987 356788821299999999999999999999 99999
Q ss_pred HHHHHHHhchhChHHHHHHHHHHHHh
Q 003035 291 VLELLSFANRFCCEEMKSACDAHLAS 316 (855)
Q Consensus 291 ~~~ll~~A~~~~~~~Lk~~C~~~l~~ 316 (855)
+.+++.+|++|+++.|+..|+++|.+
T Consensus 91 v~~ll~~A~~~~i~~L~~~C~~~l~~ 116 (116)
T 2vpk_A 91 VKEIHQAADYLKVEEVVTKCKIKMED 116 (116)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 99999999999999999999999853
No 68
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.81 E-value=1.6e-19 Score=217.48 Aligned_cols=171 Identities=20% Similarity=0.156 Sum_probs=164.3
Q ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHH
Q 003035 635 NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLK 713 (855)
Q Consensus 635 ~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~l 713 (855)
..|+++.++..+|.++.++|++++|++.|+++++++|+++++++++|.++..+|++++|+..|+++++++|++ .+++++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4688999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHH
Q 003035 714 AYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARV 789 (855)
Q Consensus 714 g~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~ 789 (855)
|.+|..+|++++|++. |++++ +++|+ .+++++|.+|..+|++++|+++|++|++++ ++.++.++|.+
T Consensus 84 g~~l~~~g~~~~A~~~----~~kAl-----~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~ 154 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQC----YTRAI-----QINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHC 154 (723)
T ss_dssp HHHHHHTTCHHHHHHH----HHHHH-----HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHH----HHHHH-----HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhH
Confidence 9999999999999999 99999 88888 999999999999999999999999999999 89999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHccCCH
Q 003035 790 YYLKNELKAAYDEMTKLLEKAQYSA 814 (855)
Q Consensus 790 ~~~~g~~~~A~~~~~kal~~~p~~~ 814 (855)
+..+|++++|++.+++++++.|+..
T Consensus 155 l~~~g~~~~A~~~~~kal~l~~~~~ 179 (723)
T 4gyw_A 155 LQIVCDWTDYDERMKKLVSIVADQL 179 (723)
T ss_dssp HHHTTCCTTHHHHHHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHhChhHH
Confidence 9999999999999999999987643
No 69
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.81 E-value=5e-18 Score=176.71 Aligned_cols=206 Identities=15% Similarity=0.038 Sum_probs=185.0
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHH
Q 003035 548 VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLA 627 (855)
Q Consensus 548 ~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~ 627 (855)
+..+..+|.++...|++++|+..+++++..+|+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~----------------------------------------------- 69 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS----------------------------------------------- 69 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-----------------------------------------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----------------------------------------------
Confidence 355667788888888888888888877765544
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--ccC
Q 003035 628 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS--IER 705 (855)
Q Consensus 628 ~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~--~~p 705 (855)
+..+++.+|.++...|++++|++.|+++++.+|++..++..+|.++...|++++|+..|+++++ ..|
T Consensus 70 -----------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 138 (252)
T 2ho1_A 70 -----------SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYP 138 (252)
T ss_dssp -----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCT
T ss_pred -----------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCc
Confidence 3345667788899999999999999999999999999999999999999999999999999999 888
Q ss_pred Ch-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cH
Q 003035 706 TF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HT 780 (855)
Q Consensus 706 ~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~ 780 (855)
.. .+++.+|.++...|++++|+.. +++++ ...|. .++..+|.++...|++++|+..|+++++.. +.
T Consensus 139 ~~~~~~~~la~~~~~~g~~~~A~~~----~~~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 209 (252)
T 2ho1_A 139 ERSRVFENLGLVSLQMKKPAQAKEY----FEKSL-----RLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNA 209 (252)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHH----HHHHH-----HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHH----HHHHH-----hcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence 88 9999999999999999999999 99999 66665 889999999999999999999999999988 88
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHH
Q 003035 781 RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKR 820 (855)
Q Consensus 781 ~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~l 820 (855)
.++..++.++...|++++|...++++++..|+++.+...+
T Consensus 210 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 210 RSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 9999999999999999999999999999999999887654
No 70
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.81 E-value=1.4e-19 Score=217.89 Aligned_cols=166 Identities=19% Similarity=0.194 Sum_probs=160.0
Q ss_pred cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCH
Q 003035 669 HSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK 747 (855)
Q Consensus 669 ~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p 747 (855)
..|+++++++++|.++..+|++++|++.|+++++++|++ .+++++|.+|..+|++++|+.. |++++ +++|
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~----~~~Al-----~l~P 74 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH----YKEAI-----RISP 74 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHH----HHHHH-----HHCT
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHH-----HhCC
Confidence 469999999999999999999999999999999999999 9999999999999999999999 99999 8888
Q ss_pred H--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh-
Q 003035 748 G--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE- 822 (855)
Q Consensus 748 ~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~- 822 (855)
+ ++|+++|.+|..+|++++|+++|++|++++ ++.+++++|.+|..+|++++|++.|+++++++|+++.++.++|.
T Consensus 75 ~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~ 154 (723)
T 4gyw_A 75 TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHC 154 (723)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhH
Confidence 8 999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred ---cCCHHHHHHHHHHHHhcCCCC
Q 003035 823 ---YSDREMAKNDLNMATQLDPLR 843 (855)
Q Consensus 823 ---~g~~eeA~~~~~kAl~l~P~~ 843 (855)
.|++++|.+.+++++++.|+.
T Consensus 155 l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 155 LQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp HHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHhChhH
Confidence 999999999999999987653
No 71
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.81 E-value=1.9e-20 Score=177.77 Aligned_cols=103 Identities=13% Similarity=0.014 Sum_probs=89.8
Q ss_pred hhcCCCCCCcEEEEEcCeEEEeeehhhhcCCHHHHHhhcCCCccCCCCeeEecCCCCCHHHHHHHHHHhccCCCCCCCHH
Q 003035 210 VCLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPG 289 (855)
Q Consensus 210 ~~~~~~~~~~V~f~v~~~~~~aHr~vLaa~S~~F~~mf~~~~~E~~~~~I~l~~~~is~~~~~~ll~y~YTg~l~~~~~~ 289 (855)
+...++...||+|+|+|++|+|||+||+++|+||++||.+++ ..+|+| +++++++|+.+|+|+|||++. ++.+
T Consensus 18 ~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~----~~~i~l--~~~~~~~f~~lL~fiYtg~~~-i~~~ 90 (135)
T 2yy9_A 18 KQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT----GGSVVL--PAGFAEIFGLLLDFFYTGHLA-LTSG 90 (135)
T ss_dssp HHHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC--------CCEEE--CGGGHHHHHHHHHHHHHSCCC-CCTT
T ss_pred HHHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC----CCeEEe--CCCCHHHHHHHHHHHhCCCCC-CCHH
Confidence 345667777899999999999999999999999999999887 568999 999999999999999999999 9999
Q ss_pred HHHHHHHHhchhChHHHHHHHHHHHHhhcC
Q 003035 290 IVLELLSFANRFCCEEMKSACDAHLASLVG 319 (855)
Q Consensus 290 ~~~~ll~~A~~~~~~~Lk~~C~~~l~~~l~ 319 (855)
++.+|+.+|++|+++.|++.|+++|.+.+.
T Consensus 91 ~v~~ll~~A~~l~i~~L~~~C~~~l~~~l~ 120 (135)
T 2yy9_A 91 NRDQVLLAAKELRVPEAVELCQSFQPQTSV 120 (135)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHCCC----
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999988776
No 72
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.80 E-value=1.8e-18 Score=178.16 Aligned_cols=201 Identities=17% Similarity=0.127 Sum_probs=178.4
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHH
Q 003035 637 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS-SEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKA 714 (855)
Q Consensus 637 p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p-~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg 714 (855)
+.++..++..|..++..|++++|+..|+++++.+| .+..+++.+|.++..+|++++|+..|+++++.+|++ .+++.+|
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 55678999999999999999999999999999999 899999999999999999999999999999999999 9999999
Q ss_pred HHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-c---HH
Q 003035 715 YILADTNLDPESSTYVIQLLEEALRCPSDGLRKG---------QALNNLGSIYVECGKLDQAENCYINALDIK-H---TR 781 (855)
Q Consensus 715 ~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~---------~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~-~---~~ 781 (855)
.+|..+|++++|+.. |++++ ...|+ .++.++|.++...|++++|++.|+++++++ + +.
T Consensus 84 ~~~~~~~~~~~A~~~----~~~al-----~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 154 (228)
T 4i17_A 84 AAYRDMKNNQEYIAT----LTEGI-----KAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTD 154 (228)
T ss_dssp HHHHHTTCHHHHHHH----HHHHH-----HHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHH
T ss_pred HHHHHcccHHHHHHH----HHHHH-----HHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHH
Confidence 999999999999999 99999 55555 569999999999999999999999999998 3 58
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh--cCCHHHHHHHHHHHHhcCCCCcccchhhh
Q 003035 782 AHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE--YSDREMAKNDLNMATQLDPLRTYPYRYRA 851 (855)
Q Consensus 782 a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~--~g~~eeA~~~~~kAl~l~P~~~~~~~~~a 851 (855)
+++++|.++..+|+ ..++++..+.+.++..+..... .+.+++|+.+|+++++++|++.......+
T Consensus 155 ~~~~l~~~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 221 (228)
T 4i17_A 155 ALYSLGVLFYNNGA-----DVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQD 221 (228)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 99999999987653 4567777777777666655555 88899999999999999999876665443
No 73
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=3.4e-18 Score=185.37 Aligned_cols=250 Identities=14% Similarity=0.044 Sum_probs=200.3
Q ss_pred chHHHHHHHHHHhCCCCchhHHHHHHHHHH-------hCCH-------HHHHHHHHHHHc-cCCC-HhHHHHHHHHHHHc
Q 003035 498 REKIVDLNYASELDPTLSFPYKYRAVAKME-------EGQI-------RAAISEIDRIIV-FKLS-VDCLELRAWLFIAA 561 (855)
Q Consensus 498 ~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~-------~~~~-------~~A~~~~~k~l~-~~p~-~~~l~lra~~y~~~ 561 (855)
++|+..|+++++.+|+++.+|+.+|..+.. .|++ ++|+..|++++. ++|+ ...+...|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 467888999999999999999999998764 4775 899999999999 6884 56778889999999
Q ss_pred CCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChH
Q 003035 562 DDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSF 641 (855)
Q Consensus 562 gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~ 641 (855)
|++++|...|++++.++|++.. .
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~---------------------------------------------------------~ 135 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPT---------------------------------------------------------L 135 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTH---------------------------------------------------------H
T ss_pred CCHHHHHHHHHHHHhccccCcc---------------------------------------------------------H
Confidence 9999999999998887665310 1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHH
Q 003035 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYD-TGHREEALSRAEKSISIERTF-EAFFLKAYILAD 719 (855)
Q Consensus 642 ~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~-~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~ 719 (855)
++...+.++.+.|++++|+..|+++++.+|....++...+.+... .|++++|+..|+++++.+|++ .++..+|..+..
T Consensus 136 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 215 (308)
T 2ond_A 136 VYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH 215 (308)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 445567777888999999999999999999888888766666544 799999999999999999998 999999999999
Q ss_pred CCCCchhHHHHHHHHHHHhcCCCCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcC
Q 003035 720 TNLDPESSTYVIQLLEEALRCPSDGLRKG---QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKN 794 (855)
Q Consensus 720 ~g~~~~A~~~~~~lle~al~~~~~~~~p~---~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g 794 (855)
.|++++|... |+++++.. .+.|+ .+|..++..+...|++++|...++++++.. +.... .++.+
T Consensus 216 ~g~~~~A~~~----~~~al~~~--~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~-~~~~~----- 283 (308)
T 2ond_A 216 LNEDNNTRVL----FERVLTSG--SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGK-ETALL----- 283 (308)
T ss_dssp TCCHHHHHHH----HHHHHHSS--SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSC-HHHHH-----
T ss_pred CCCHHHHHHH----HHHHHhcc--CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccc-hHHHH-----
Confidence 9999999999 99999321 02443 788899999999999999999999999877 22111 11222
Q ss_pred CHHHHHHHHHHHHHHccCCHHHHHHHhh
Q 003035 795 ELKAAYDEMTKLLEKAQYSASAFEKRSE 822 (855)
Q Consensus 795 ~~~~A~~~~~kal~~~p~~~~a~~~lg~ 822 (855)
..-.+.+.++|+++.+++.||+
T Consensus 284 ------~~r~~~l~~~P~~~~~ln~lgY 305 (308)
T 2ond_A 284 ------VDRYKFMDLYPCSASELKALGY 305 (308)
T ss_dssp ------HTTTCBTTBCSSCHHHHHTTTC
T ss_pred ------HHHHHhcccCCCCHHHHHhcCC
Confidence 1112667789999999998885
No 74
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.79 E-value=2.9e-17 Score=166.76 Aligned_cols=207 Identities=16% Similarity=0.134 Sum_probs=171.8
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHH
Q 003035 548 VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLA 627 (855)
Q Consensus 548 ~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~ 627 (855)
+..+..+|.++...|++++|+..+++++..+|++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------------------------------------- 41 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKN---------------------------------------------- 41 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccc----------------------------------------------
Confidence 4556666777777888888877777777655542
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHh--cc
Q 003035 628 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDT-GHREEALSRAEKSIS--IE 704 (855)
Q Consensus 628 ~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~-g~~~eAl~~~~kal~--~~ 704 (855)
...++.+|.++...|++++|+..|+++++.+|++..++..+|.++... |++++|+..++++++ ..
T Consensus 42 ------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~ 109 (225)
T 2vq2_A 42 ------------ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTY 109 (225)
T ss_dssp ------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTC
T ss_pred ------------hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCC
Confidence 234556777888888899999999999988898888888999999999 999999999999988 66
Q ss_pred CCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc---
Q 003035 705 RTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--- 778 (855)
Q Consensus 705 p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--- 778 (855)
|.. .+++.+|.++...|++++|+.. +++++ ...|. .++..+|.++...|++++|+..|+++++..
T Consensus 110 ~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~~~-----~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 180 (225)
T 2vq2_A 110 PTPYIANLNKGICSAKQGQFGLAEAY----LKRSL-----AAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVL 180 (225)
T ss_dssp SCHHHHHHHHHHHHHHTTCHHHHHHH----HHHHH-----HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSC
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHH----HHHHH-----HhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 666 8888899999999999999888 88888 66665 788899999999999999999999998875
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHh
Q 003035 779 HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS 821 (855)
Q Consensus 779 ~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg 821 (855)
+..++..++.++...|+.++|..+++.+++..|+++.+...+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 223 (225)
T 2vq2_A 181 QADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVLT 223 (225)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHhc
Confidence 6778888888999999999999999999999999998876653
No 75
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.79 E-value=4.2e-18 Score=190.00 Aligned_cols=241 Identities=11% Similarity=0.057 Sum_probs=196.5
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHcc---CCC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccc
Q 003035 517 PYKYRAVAKMEEGQIRAAISEIDRIIVF---KLS----VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS 589 (855)
Q Consensus 517 a~~~~a~~~~~~~~~~~A~~~~~k~l~~---~p~----~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~ 589 (855)
.++.+|..+...|++++|+..+++++.. .++ ..++..+|.+|..+|++++|+..+++++.+.++....
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~----- 179 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY----- 179 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT-----
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc-----
Confidence 3455899999999999999999999986 222 3567788999999999999999999999765442100
Q ss_pred hhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003035 590 GDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH 669 (855)
Q Consensus 590 ~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~ 669 (855)
.+....++..+|.++..+|++++|+..|++++++
T Consensus 180 ----------------------------------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 213 (383)
T 3ulq_A 180 ----------------------------------------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSM 213 (383)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 0111235677899999999999999999999988
Q ss_pred CCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----c-CCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHH
Q 003035 670 SSSE------HERLVYEGWILYDTGHREEALSRAEKSISI-----E-RTF-EAFFLKAYILADTNLDPESSTYVIQLLEE 736 (855)
Q Consensus 670 ~p~~------~~~~~~lg~~~~~~g~~~eAl~~~~kal~~-----~-p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~ 736 (855)
.|.. ..++.++|.++..+|++++|+.+|++++++ + |.. .+++++|.++...|++++|... +++
T Consensus 214 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~----~~~ 289 (383)
T 3ulq_A 214 AEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEY----HSK 289 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHH----HHH
T ss_pred HHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHH----HHH
Confidence 5533 357899999999999999999999999994 5 666 9999999999999999999999 999
Q ss_pred HhcCCCCCCCHH--HHHHHHHHHHHHcCC---HHHHHHHHHHHHhcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 003035 737 ALRCPSDGLRKG--QALNNLGSIYVECGK---LDQAENCYINALDIK-HTRAHQGLARVYYLKNELKAAYDEMTKLLEKA 810 (855)
Q Consensus 737 al~~~~~~~~p~--~a~~~LG~~y~~~g~---~~~A~~~~~kAL~~~-~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~ 810 (855)
+++......+|. ..+..+|.+|...|+ +++|+..+++.-... ...++..+|.+|..+|++++|+.+|++++++.
T Consensus 290 al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 290 GMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 983222112343 446789999999999 888888888772222 56788999999999999999999999999986
Q ss_pred cC
Q 003035 811 QY 812 (855)
Q Consensus 811 p~ 812 (855)
..
T Consensus 370 ~~ 371 (383)
T 3ulq_A 370 QL 371 (383)
T ss_dssp TS
T ss_pred HH
Confidence 54
No 76
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.78 E-value=7.6e-20 Score=169.69 Aligned_cols=97 Identities=21% Similarity=0.265 Sum_probs=89.4
Q ss_pred hcCCCCCCcEEEEEcCeEEEeeehhhhcCCHHHHHhhcCCCccCCCCeeEecCCCCCHHHHHHHHHHhccCCCCCCCHHH
Q 003035 211 CLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGI 290 (855)
Q Consensus 211 ~~~~~~~~~V~f~v~~~~~~aHr~vLaa~S~~F~~mf~~~~~E~~~~~I~l~~~~is~~~~~~ll~y~YTg~l~~~~~~~ 290 (855)
...++..+||+|+|+|++|+|||.||+++|+||++||.++ ..+|.+ +++++++|+.+|+|+|||++. ++.++
T Consensus 21 l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~-----~~~i~l--~~~~~~~f~~ll~~~Ytg~~~-i~~~~ 92 (119)
T 2q81_A 21 QRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQ-----KDVVHL--DISNAAGLGQVLEFMYTAKLS-LSPEN 92 (119)
T ss_dssp HHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHC-----CSGGGG--GGCCHHHHHHHHHHHHHSCCC-CCTTT
T ss_pred HHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEe--CCCCHHHHHHHHHHHcCCCCc-cCHHH
Confidence 3456777789999999999999999999999999999863 457888 899999999999999999999 99999
Q ss_pred HHHHHHHhchhChHHHHHHHHHHHH
Q 003035 291 VLELLSFANRFCCEEMKSACDAHLA 315 (855)
Q Consensus 291 ~~~ll~~A~~~~~~~Lk~~C~~~l~ 315 (855)
+.+++.+|++|+++.|++.|++||.
T Consensus 93 ~~~ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 93 VDDVLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 9999999999999999999999985
No 77
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.78 E-value=1.4e-18 Score=182.80 Aligned_cols=213 Identities=13% Similarity=0.041 Sum_probs=186.7
Q ss_pred hHHHHHHHHHcC----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 003035 625 SLAVINQMLIND----PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKS 700 (855)
Q Consensus 625 al~~~~~~l~~~----p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~ka 700 (855)
++..+.++++.. |.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++
T Consensus 24 A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 103 (275)
T 1xnf_A 24 ILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSV 103 (275)
T ss_dssp HHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 566777778763 5567889999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003035 701 ISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDI 777 (855)
Q Consensus 701 l~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~ 777 (855)
++++|++ .+++.+|.++...|++++|+.. |++++ ...|+ .....+ .+....|++++|+..|++++..
T Consensus 104 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~----~~~a~-----~~~~~~~~~~~~~-~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 104 LELDPTYNYAHLNRGIALYYGGRDKLAQDD----LLAFY-----QDDPNDPFRSLWL-YLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHCTTCTHHHHHHHHHHHHTTCHHHHHHH----HHHHH-----HHCTTCHHHHHHH-HHHHHHHCHHHHHHHHHHHHHH
T ss_pred HhcCccccHHHHHHHHHHHHhccHHHHHHH----HHHHH-----HhCCCChHHHHHH-HHHHHhcCHHHHHHHHHHHHhc
Confidence 9999999 9999999999999999999999 99999 66666 333333 3446779999999999999998
Q ss_pred c-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccC----CHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCCcccc
Q 003035 778 K-HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQY----SASAFEKRSE----YSDREMAKNDLNMATQLDPLRTYPY 847 (855)
Q Consensus 778 ~-~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~----~~~a~~~lg~----~g~~eeA~~~~~kAl~l~P~~~~~~ 847 (855)
. +....+.++.++...++.++|+..++++++..|+ ++.++..+|. .|++++|+..|+++++++|++...+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 252 (275)
T 1xnf_A 174 SDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 252 (275)
T ss_dssp SCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred CCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH
Confidence 7 3333456888888899999999999999987774 3788999999 9999999999999999999886555
No 78
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.78 E-value=6.9e-19 Score=203.05 Aligned_cols=190 Identities=16% Similarity=0.110 Sum_probs=181.3
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHH
Q 003035 654 NCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHR-EEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVI 731 (855)
Q Consensus 654 g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~-~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~ 731 (855)
+++++++..++++....|+++.+++.+|.++...|++ ++|+..|+++++++|++ .+++.+|.+|...|++++|+..
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~-- 159 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTC-- 159 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH--
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH--
Confidence 3478889999999999999999999999999999999 99999999999999999 9999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCHH-HHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHc------
Q 003035 732 QLLEEALRCPSDGLRKG-QALNNLGSIYVEC---------GKLDQAENCYINALDIK--HTRAHQGLARVYYLK------ 793 (855)
Q Consensus 732 ~lle~al~~~~~~~~p~-~a~~~LG~~y~~~---------g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~------ 793 (855)
|++++ .++|+ .++.++|.++... |++++|++.|+++++++ ++.+++++|.++..+
T Consensus 160 --~~~al-----~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~ 232 (474)
T 4abn_A 160 --FSGAL-----THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQ 232 (474)
T ss_dssp --HHHHH-----TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred --HHHHH-----hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 99999 77777 9999999999999 99999999999999999 899999999999999
Q ss_pred --CCHHHHHHHHHHHHHHcc---CCHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCCcccchhhhc
Q 003035 794 --NELKAAYDEMTKLLEKAQ---YSASAFEKRSE----YSDREMAKNDLNMATQLDPLRTYPYRYRAA 852 (855)
Q Consensus 794 --g~~~~A~~~~~kal~~~p---~~~~a~~~lg~----~g~~eeA~~~~~kAl~l~P~~~~~~~~~a~ 852 (855)
|++++|+..|+++++++| +++.+|+.+|. .|++++|+..|++|++++|++..++..++.
T Consensus 233 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~ 300 (474)
T 4abn_A 233 NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQ 300 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999999999999999 99999999999 999999999999999999999887776654
No 79
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=1.3e-17 Score=180.82 Aligned_cols=211 Identities=8% Similarity=-0.111 Sum_probs=190.8
Q ss_pred hHHHHHHHHHcCCCChHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHCCC
Q 003035 625 SLAVINQMLINDPGKSFLRFRQSLLLLR-------LNCQ-------KAAMRCLRLARN-HSSSEHERLVYEGWILYDTGH 689 (855)
Q Consensus 625 al~~~~~~l~~~p~~~~~~~~~a~~l~~-------~g~~-------~~A~~~l~~al~-~~p~~~~~~~~lg~~~~~~g~ 689 (855)
++..+.+++..+|.++.+|+..|.++.. .|++ ++|+..|+++++ ++|++..+|..+|.++...|+
T Consensus 35 a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~ 114 (308)
T 2ond_A 35 VMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK 114 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCC
Confidence 4567889999999999999999988764 5885 999999999999 799999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCh-H-HHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHH-cCCH
Q 003035 690 REEALSRAEKSISIERTF-E-AFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVE-CGKL 764 (855)
Q Consensus 690 ~~eAl~~~~kal~~~p~~-~-a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~-~g~~ 764 (855)
+++|...|+++++++|++ . +|..+|.++...|++++|... |++++ ...|. .+|...+.+... .|++
T Consensus 115 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~----~~~a~-----~~~p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 115 YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI----FKKAR-----EDARTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHH----HHHHH-----TSTTCCTHHHHHHHHHHHHTSCCH
T ss_pred HHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHH----HHHHH-----hcCCCCHHHHHHHHHHHHHHcCCH
Confidence 999999999999999988 6 999999999999999999999 99999 66666 666666655443 7999
Q ss_pred HHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---cc-CCHHHHHHHhh----cCCHHHHHHHHH
Q 003035 765 DQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEK---AQ-YSASAFEKRSE----YSDREMAKNDLN 834 (855)
Q Consensus 765 ~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~---~p-~~~~a~~~lg~----~g~~eeA~~~~~ 834 (855)
++|.++|+++++.. ++.++.++|.++..+|++++|+..|+++++. .| +...+|..++. .|+.++|...++
T Consensus 186 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999998 8999999999999999999999999999995 55 47888888877 899999999999
Q ss_pred HHHhcCCCCc
Q 003035 835 MATQLDPLRT 844 (855)
Q Consensus 835 kAl~l~P~~~ 844 (855)
+++++.|++.
T Consensus 266 ~a~~~~p~~~ 275 (308)
T 2ond_A 266 RRFTAFREEY 275 (308)
T ss_dssp HHHHHTTTTT
T ss_pred HHHHHccccc
Confidence 9999999865
No 80
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.78 E-value=3.7e-18 Score=190.48 Aligned_cols=234 Identities=13% Similarity=0.040 Sum_probs=192.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHH
Q 003035 551 LELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVIN 630 (855)
Q Consensus 551 l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~ 630 (855)
+..+|.++...|++++|+..+++++.+.+...
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~------------------------------------------------ 137 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVK------------------------------------------------ 137 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCC------------------------------------------------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCC------------------------------------------------
Confidence 44589999999999999999999997522100
Q ss_pred HHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q 003035 631 QMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS-------SEHERLVYEGWILYDTGHREEALSRAEKSISI 703 (855)
Q Consensus 631 ~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p-------~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~ 703 (855)
..+..+.+++.+|.++...|++++|+.++++++++.+ ....++..+|.++..+|++++|+..|++++++
T Consensus 138 ----~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 213 (383)
T 3ulq_A 138 ----DRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSM 213 (383)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 0011234678889999999999999999999999843 34568899999999999999999999999988
Q ss_pred cCCh-------HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCC-HH--HHHHHHHHHHHHcCCHHHHHHHHHH
Q 003035 704 ERTF-------EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR-KG--QALNNLGSIYVECGKLDQAENCYIN 773 (855)
Q Consensus 704 ~p~~-------~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~-p~--~a~~~LG~~y~~~g~~~~A~~~~~k 773 (855)
.+.. .+++++|.+|..+|++++|+.. ++++++....... |. .++.++|.+|...|++++|+.+|++
T Consensus 214 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~----~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 289 (383)
T 3ulq_A 214 AEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPY----FKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSK 289 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH----HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHH----HHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5432 5899999999999999999999 9999932221134 55 8999999999999999999999999
Q ss_pred HHhcc----c---HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHccCCHHHHHHHhh----cCCHHHHHHHHHHHHhc
Q 003035 774 ALDIK----H---TRAHQGLARVYYLKNE---LKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQL 839 (855)
Q Consensus 774 AL~~~----~---~~a~~~lg~~~~~~g~---~~~A~~~~~kal~~~p~~~~a~~~lg~----~g~~eeA~~~~~kAl~l 839 (855)
++++. + ...+..+|.++...|+ +.+|+..+++. ...|....++..+|. .|++++|..+|++++++
T Consensus 290 al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 290 GMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99884 2 2336789999999999 78888888776 444556778888998 99999999999999988
Q ss_pred CC
Q 003035 840 DP 841 (855)
Q Consensus 840 ~P 841 (855)
..
T Consensus 369 ~~ 370 (383)
T 3ulq_A 369 RQ 370 (383)
T ss_dssp HT
T ss_pred HH
Confidence 54
No 81
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.78 E-value=1.8e-20 Score=175.49 Aligned_cols=100 Identities=18% Similarity=0.190 Sum_probs=92.3
Q ss_pred hhcCCCCCCcEEEEEcCeEEEeeehhhhcCCHHHHHhhcCCCccCCCCeeEecCCC-CCHHHHHHHHHHhccCCCCCCCH
Q 003035 210 VCLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDG-VSVEGLRAVEVYTRTSRVDLFCP 288 (855)
Q Consensus 210 ~~~~~~~~~~V~f~v~~~~~~aHr~vLaa~S~~F~~mf~~~~~E~~~~~I~l~~~~-is~~~~~~ll~y~YTg~l~~~~~ 288 (855)
+...++..+||+|+|+|++|+|||.||+++|+||++||.+++.| ..+|.+ ++ +++++|+.+|+|+|||++. ++.
T Consensus 25 ~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e--~~~i~l--~~~~~~~~f~~~l~~iYtg~~~-~~~ 99 (125)
T 3ohu_A 25 DQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKN--DLVVSL--PEEVTARGFGPLLQFAYTAKLL-LSR 99 (125)
T ss_dssp HHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCS--SCEEEC--CTTCCHHHHHHHHHHHTTSEEE-ECT
T ss_pred HHHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCC--CcEEEe--CCCCCHHHHHHHHHhHcCCceE-ECH
Confidence 34556777789999999999999999999999999999999987 668999 87 9999999999999999999 999
Q ss_pred HHHHHHHHHhchhChHHHHHHHHHHH
Q 003035 289 GIVLELLSFANRFCCEEMKSACDAHL 314 (855)
Q Consensus 289 ~~~~~ll~~A~~~~~~~Lk~~C~~~l 314 (855)
+++.+++.+|++|+++.|++.|++||
T Consensus 100 ~~v~~ll~~A~~l~i~~L~~~C~~~L 125 (125)
T 3ohu_A 100 ENIREVIRCAEFLRMHNLEDSCFSFL 125 (125)
T ss_dssp TTHHHHHHHHHHHTBSSCTTSSCCCC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHhC
Confidence 99999999999999999999998764
No 82
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.78 E-value=1.7e-20 Score=175.45 Aligned_cols=101 Identities=18% Similarity=0.187 Sum_probs=89.6
Q ss_pred hhcCCCCCCcEEEEEcCeEEEeeehhhhcCCHHHHHhhcCCCccCCCCeeEecCC-CCCHHHHHHHHHHhccCCCCCCCH
Q 003035 210 VCLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHD-GVSVEGLRAVEVYTRTSRVDLFCP 288 (855)
Q Consensus 210 ~~~~~~~~~~V~f~v~~~~~~aHr~vLaa~S~~F~~mf~~~~~E~~~~~I~l~~~-~is~~~~~~ll~y~YTg~l~~~~~ 288 (855)
+...++..+||+|+|+|++|+|||.||+++|+||++||.++|.|+ .+|.+ + ++++++|+.+|+|+|||++. ++.
T Consensus 22 ~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~--~~i~l--~~~v~~~~f~~lL~~iYtg~~~-i~~ 96 (124)
T 2ihc_A 22 DQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGE--LNITL--PEEVTVKGFEPLIQFAYTAKLI-LSK 96 (124)
T ss_dssp HHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC---C--EEEEC--CTTSCHHHHHHHHHHHHHSEEE-EET
T ss_pred HHHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCCC--ceEee--cCCcCHHHHHHHHHHhcCCCcc-cCH
Confidence 344567777899999999999999999999999999999999875 47888 5 89999999999999999999 999
Q ss_pred HHHHHHHHHhchhChHHHHHHHHHHHH
Q 003035 289 GIVLELLSFANRFCCEEMKSACDAHLA 315 (855)
Q Consensus 289 ~~~~~ll~~A~~~~~~~Lk~~C~~~l~ 315 (855)
+++.+++.+|++|+++.|+..|++||.
T Consensus 97 ~~v~~ll~~A~~~~~~~L~~~C~~~l~ 123 (124)
T 2ihc_A 97 ENVDEVCKCVEFLSVHNIEESCFQFLK 123 (124)
T ss_dssp TTHHHHHHHHHHHTBSSCCGGGGGTC-
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHh
Confidence 999999999999999999999999875
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.77 E-value=2.2e-18 Score=177.43 Aligned_cols=162 Identities=9% Similarity=0.064 Sum_probs=145.8
Q ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC-Ch-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH
Q 003035 671 SSEHERLVYEGWILYDTGHREEALSRAEKSISIER-TF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG 748 (855)
Q Consensus 671 p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p-~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~ 748 (855)
+.+++.++.+|.+++..|++++|+..|+++++++| .+ .+++.+|.++...|++++|+.. |++++ ..+|+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~----~~~al-----~~~p~ 74 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADY----FDIAI-----KKNYN 74 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHH----HHHHH-----HTTCS
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHH----HHHHH-----HhCcc
Confidence 56779999999999999999999999999999998 66 8899999999999999999999 99999 88887
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccC--CHH
Q 003035 749 --QALNNLGSIYVECGKLDQAENCYINALDIK--HT-------RAHQGLARVYYLKNELKAAYDEMTKLLEKAQY--SAS 815 (855)
Q Consensus 749 --~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~-------~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~--~~~ 815 (855)
.++.++|.+|..+|++++|++.|++++++. ++ .++.++|.++..+|++++|++.|+++++++|+ ++.
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 154 (228)
T 4i17_A 75 LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTD 154 (228)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHH
Confidence 899999999999999999999999999998 66 67999999999999999999999999999999 999
Q ss_pred HHHHHhh-cCCHHHHHHHHHHHHhcCCCC
Q 003035 816 AFEKRSE-YSDREMAKNDLNMATQLDPLR 843 (855)
Q Consensus 816 a~~~lg~-~g~~eeA~~~~~kAl~l~P~~ 843 (855)
++..+|. . +..+...++++..+.+.+
T Consensus 155 ~~~~l~~~~--~~~~~~~~~~a~~~~~~~ 181 (228)
T 4i17_A 155 ALYSLGVLF--YNNGADVLRKATPLASSN 181 (228)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHGGGTTTC
T ss_pred HHHHHHHHH--HHHHHHHHHHHHhcccCC
Confidence 9999999 2 233445556666665554
No 84
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.77 E-value=7.1e-18 Score=177.68 Aligned_cols=198 Identities=14% Similarity=0.087 Sum_probs=169.3
Q ss_pred HcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh---
Q 003035 634 INDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTF--- 707 (855)
Q Consensus 634 ~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~---~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~--- 707 (855)
..+|.++..++.+|..+++.|++++|+..|+++++.+|++ +.+++.+|.+++.+|++++|+..|+++++.+|++
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 4578899999999999999999999999999999999999 9999999999999999999999999999998854
Q ss_pred -HHHHHHHHHHHH--------CCCCchhHHHHHHHHHHHhcCCCCCCCHH-----HHH--------------HHHHHHHH
Q 003035 708 -EAFFLKAYILAD--------TNLDPESSTYVIQLLEEALRCPSDGLRKG-----QAL--------------NNLGSIYV 759 (855)
Q Consensus 708 -~a~~~lg~~~~~--------~g~~~~A~~~~~~lle~al~~~~~~~~p~-----~a~--------------~~LG~~y~ 759 (855)
.+++.+|.++.. .|++++|+.. |++++ ...|+ .++ .++|.+|.
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~----~~~~l-----~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 159 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEA----FQLFI-----DRYPNHELVDDATQKIRELRAKLARKQYEAARLYE 159 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHH----HHHHH-----HHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHH----HHHHH-----HHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999 9999999999 99999 55554 343 88999999
Q ss_pred HcCCHHHHHHHHHHHHhcc-----cHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHccCCHHHHHHHhhcC
Q 003035 760 ECGKLDQAENCYINALDIK-----HTRAHQGLARVYYLK----------NELKAAYDEMTKLLEKAQYSASAFEKRSEYS 824 (855)
Q Consensus 760 ~~g~~~~A~~~~~kAL~~~-----~~~a~~~lg~~~~~~----------g~~~~A~~~~~kal~~~p~~~~a~~~lg~~g 824 (855)
..|++++|+..|+++++.. .+.+++.+|.++..+ |++++|+..|+++++..|+++.+...+...+
T Consensus 160 ~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 239 (261)
T 3qky_A 160 RRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYT 239 (261)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 9999999999999999886 357899999999977 8899999999999999999976655554444
Q ss_pred CHHHHHHHHHHHHhcC
Q 003035 825 DREMAKNDLNMATQLD 840 (855)
Q Consensus 825 ~~eeA~~~~~kAl~l~ 840 (855)
+.......++.+..+.
T Consensus 240 ~~~~~~~~~~~~~~~~ 255 (261)
T 3qky_A 240 RARQRLTELEGDASLA 255 (261)
T ss_dssp HHHHHHHHHHTCTTCC
T ss_pred HHHHHHHHhhhhhHHh
Confidence 4444444454444443
No 85
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.77 E-value=1e-15 Score=187.74 Aligned_cols=183 Identities=14% Similarity=0.016 Sum_probs=90.4
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh----------
Q 003035 638 GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF---------- 707 (855)
Q Consensus 638 ~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~---------- 707 (855)
+.+.+|+.+|..+...|++++|+.+|.++ ++++.+...|.++...|++++|+++|+.+.+..++.
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaY 1177 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFAL 1177 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHH
Confidence 33445555555555555555555555443 445555555555555555555555555555444332
Q ss_pred ------------------HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 003035 708 ------------------EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAEN 769 (855)
Q Consensus 708 ------------------~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~~a~~~LG~~y~~~g~~~~A~~ 769 (855)
..+..+|..+...|+|++|... |.++- .|..+|.+|.++|++++|++
T Consensus 1178 AKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~----Y~kA~-----------ny~rLA~tLvkLge~q~AIE 1242 (1630)
T 1xi4_A 1178 AKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLL----YNNVS-----------NFGRLASTLVHLGEYQAAVD 1242 (1630)
T ss_pred HhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHH----HHhhh-----------HHHHHHHHHHHhCCHHHHHH
Confidence 3344455555555555555555 55443 45555555555555555555
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCCcc
Q 003035 770 CYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLDPLRTY 845 (855)
Q Consensus 770 ~~~kAL~~~~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~----~g~~eeA~~~~~kAl~l~P~~~~ 845 (855)
++++|. ++.+|...+.++...|++..|...... +.. +++.+..++. .|.+++|+..+++++.++|....
T Consensus 1243 aarKA~---n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv---~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~g 1315 (1630)
T 1xi4_A 1243 GARKAN---STRTWKEVCFACVDGKEFRLAQMCGLH-IVV---HADELEELINYYQDRGYFEELITMLEAALGLERAHMG 1315 (1630)
T ss_pred HHHHhC---CHHHHHHHHHHHhhhhHHHHHHHHHHh-hhc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhH
Confidence 555552 223333333333333333333332221 111 2333333333 67777777777777777765544
Q ss_pred cc
Q 003035 846 PY 847 (855)
Q Consensus 846 ~~ 847 (855)
.|
T Consensus 1316 mf 1317 (1630)
T 1xi4_A 1316 MF 1317 (1630)
T ss_pred HH
Confidence 44
No 86
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.77 E-value=7.4e-20 Score=172.34 Aligned_cols=101 Identities=14% Similarity=0.137 Sum_probs=85.7
Q ss_pred hcCCCCCCcEEEEEcCeEEEeeehhhhcCCHHHHHhhcCCCccCCCCeeEecCC-CCCHHHHHHHHHHhccCCCCCCCHH
Q 003035 211 CLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHD-GVSVEGLRAVEVYTRTSRVDLFCPG 289 (855)
Q Consensus 211 ~~~~~~~~~V~f~v~~~~~~aHr~vLaa~S~~F~~mf~~~~~E~~~~~I~l~~~-~is~~~~~~ll~y~YTg~l~~~~~~ 289 (855)
...++..+||+|+|+|++|+|||.||+++|+||++||.++ ...+|.| + ++++++|+.+|+|+|||++. ++.+
T Consensus 27 l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~----~~~~i~l--~~~~~~~~f~~ll~~iYtg~~~-i~~~ 99 (129)
T 3ga1_A 27 QRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS----RSAVVEL--PAAVQPQSFQQILSFCYTGRLS-MNVG 99 (129)
T ss_dssp HHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC----CCSEEEC--CTTCCHHHHHHHHHHHHHSEEE-CCTT
T ss_pred HHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC----CCCEEEE--CCCCCHHHHHHHHHHHhCCccc-cCHH
Confidence 3456677789999999999999999999999999999877 5668999 7 89999999999999999999 9999
Q ss_pred HHHHHHHHhchhChHHHHHHHHHHHHhhc
Q 003035 290 IVLELLSFANRFCCEEMKSACDAHLASLV 318 (855)
Q Consensus 290 ~~~~ll~~A~~~~~~~Lk~~C~~~l~~~l 318 (855)
++.+++.+|++|+++.|++.|++||.+..
T Consensus 100 ~~~~ll~~A~~~~i~~l~~~C~~~L~~~~ 128 (129)
T 3ga1_A 100 DQDLLMYTAGFLQIQEIMEKGTEFFLKVS 128 (129)
T ss_dssp THHHHHHHHHHTTBTTSSCC---------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998653
No 87
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.76 E-value=7.5e-15 Score=180.11 Aligned_cols=379 Identities=15% Similarity=0.107 Sum_probs=244.9
Q ss_pred HHHHhhcccccchhhHHHHHHHHhhchhh----HHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhcchhhhhhHHHHH
Q 003035 386 FLSQVAMEKDRVSNTTVMLLERLGECSTE----RWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAK 461 (855)
Q Consensus 386 ~La~~~~~~~~~~~~a~~~le~~~~~~~~----~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~~~a~~~la~~~ 461 (855)
+.++.++..|. ..+++++||+++.. |+ +.. ......++.+....++..+.+.-++..+ .-.+|.++
T Consensus 990 ~~vKaf~~agl-p~EaieLLEKivl~-~s~fs~n~~-LqnlLi~tAIkaD~~Rv~eyI~kLd~~d-------~~eIA~Ia 1059 (1630)
T 1xi4_A 990 VTVKAFMTADL-PNELIELLEKIVLD-NSVFSEHRN-LQNLLILTAIKADRTRVMEYINRLDNYD-------APDIANIA 1059 (1630)
T ss_pred HHHHHHHhCCC-HHHHHHHHHHHHcC-CCcccccHH-HHHHHHHHHHHhChhhHHHHHHHhhhcc-------HHHHHHHH
Confidence 55677778888 99999999999944 43 211 2223556667777777777777666443 23488999
Q ss_pred HHhCChHHHHHHHHhHHHcCCCc-hHHHHHHhhccCcchHHHHHHHHHHhC--CCCchhHHHHHHHHHHhCCHHHHHHHH
Q 003035 462 YKVGQQYSAYKLINSIISEHKPT-GWMYQERSLYNLGREKIVDLNYASELD--PTLSFPYKYRAVAKMEEGQIRAAISEI 538 (855)
Q Consensus 462 ~~~g~~~~A~~~l~~~i~~~p~~-~~~y~~~~~~~~~~~A~~~l~~a~~ld--P~~~~a~~~~a~~~~~~~~~~~A~~~~ 538 (855)
...|.+++|...|+++- .+.. ...+. +++..+++|++.- .+.+..|+.+|..+...|++++|+..|
T Consensus 1060 i~lglyEEAf~IYkKa~--~~~~A~~VLi---------e~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsY 1128 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD--VNTSAVQVLI---------EHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSY 1128 (1630)
T ss_pred HhCCCHHHHHHHHHHcC--CHHHHHHHHH---------HHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999999862 1111 11111 2334445544433 467889999999999999999999999
Q ss_pred HHHHccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcc
Q 003035 539 DRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWS 618 (855)
Q Consensus 539 ~k~l~~~p~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~ 618 (855)
.++ .+++.+...|.++.+.|++++|++.|+.+....++.... . .+...+.. .++
T Consensus 1129 iKA----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Id-----t-~LafaYAK-l~r--------------- 1182 (1630)
T 1xi4_A 1129 IKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVE-----T-ELIFALAK-TNR--------------- 1182 (1630)
T ss_pred Hhc----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccccc-----H-HHHHHHHh-hcC---------------
Confidence 886 467788888999999999999999999999877653100 0 00000000 000
Q ss_pred cccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Q 003035 619 SVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAE 698 (855)
Q Consensus 619 ~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~ 698 (855)
+..+...+ ..| +...+...|..+...|++++|+.+|.++ ..|..+|.++..+|++++|+..++
T Consensus 1183 -------leele~fI-~~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaar 1245 (1630)
T 1xi4_A 1183 -------LAELEEFI-NGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGAR 1245 (1630)
T ss_pred -------HHHHHHHH-hCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHH
Confidence 01111112 122 2334455666666666666666666664 356666666666666666666666
Q ss_pred HHHhccC-------------------------Ch-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HH
Q 003035 699 KSISIER-------------------------TF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QA 750 (855)
Q Consensus 699 kal~~~p-------------------------~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a 750 (855)
+|....+ .+ +.+..++..|...|.+++|+.. +++++ .+++. ..
T Consensus 1246 KA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~L----lE~aL-----~LeraH~gm 1316 (1630)
T 1xi4_A 1246 KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITM----LEAAL-----GLERAHMGM 1316 (1630)
T ss_pred HhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHH----HHHHh-----ccChhHhHH
Confidence 6633322 01 2233556667777777777777 77777 66666 66
Q ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHHhcc-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------
Q 003035 751 LNNLGSIYVEC--GKLDQAENCYINALDIK-------HTRAHQGLARVYYLKNELKAAYDEMTKLLEK------------ 809 (855)
Q Consensus 751 ~~~LG~~y~~~--g~~~~A~~~~~kAL~~~-------~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~------------ 809 (855)
+..||.+|.+- ++..++++.|.+.+.+. +...|..+..+|.+-|++++|+..+-+....
T Consensus 1317 ftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~ 1396 (1630)
T 1xi4_A 1317 FTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT 1396 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc
Confidence 66777777654 46777777777777653 5566777777777778888777444443332
Q ss_pred ccCCHHHHHHHhh--cCCHHHHHHHHHHHH
Q 003035 810 AQYSASAFEKRSE--YSDREMAKNDLNMAT 837 (855)
Q Consensus 810 ~p~~~~a~~~lg~--~g~~eeA~~~~~kAl 837 (855)
.+.|++.|+.... .+...+++.++..++
T Consensus 1397 kv~n~elyykai~Fyl~~~P~~lndLl~~l 1426 (1630)
T 1xi4_A 1397 KVANVELYYRAIQFYLEFKPLLLNDLLMVL 1426 (1630)
T ss_pred ccccHHHHHHHHHHHHhhChHHHHHHHHHh
Confidence 5667777777666 666666666666666
No 88
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=1.2e-17 Score=178.56 Aligned_cols=204 Identities=15% Similarity=0.145 Sum_probs=179.5
Q ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc--
Q 003035 635 NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH--------SSSEHERLVYEGWILYDTGHREEALSRAEKSISIE-- 704 (855)
Q Consensus 635 ~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~--------~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~-- 704 (855)
.+|....+++.+|..+...|++++|+..|++++++ .|....++..+|.++...|++++|+..|++++++.
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 35777888999999999999999999999999995 67788899999999999999999999999999883
Q ss_pred ------CCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCC---CCCHH--HHHHHHHHHHHHcCCHHHHHHHHH
Q 003035 705 ------RTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSD---GLRKG--QALNNLGSIYVECGKLDQAENCYI 772 (855)
Q Consensus 705 ------p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~---~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~ 772 (855)
|.. .+++.+|.++...|++++|+.. ++++++.... ...|. .++.++|.++...|++++|+++|+
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~----~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 177 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPL----CKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ 177 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHH----HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHH----HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444 8899999999999999999999 8888832100 11244 889999999999999999999999
Q ss_pred HHHhc--------c--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------------------------
Q 003035 773 NALDI--------K--HTRAHQGLARVYYLKNELKAAYDEMTKLLEK--------------------------------- 809 (855)
Q Consensus 773 kAL~~--------~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~--------------------------------- 809 (855)
+++++ . ...++..+|.++..+|++++|+..++++++.
T Consensus 178 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (311)
T 3nf1_A 178 RALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDG 257 (311)
T ss_dssp HHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhH
Confidence 99998 4 5678999999999999999999999999985
Q ss_pred ----------------ccCCHHHHHHHhh----cCCHHHHHHHHHHHHhcCCC
Q 003035 810 ----------------AQYSASAFEKRSE----YSDREMAKNDLNMATQLDPL 842 (855)
Q Consensus 810 ----------------~p~~~~a~~~lg~----~g~~eeA~~~~~kAl~l~P~ 842 (855)
.|..+.++..+|. .|++++|+.+|++++++.|.
T Consensus 258 ~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 258 TSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 3666788889998 89999999999999999875
No 89
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.75 E-value=8.4e-19 Score=162.30 Aligned_cols=91 Identities=14% Similarity=0.122 Sum_probs=83.1
Q ss_pred CCCCCcEEEEEcCeEEEeeehhhhcCCHHHHHhhcCCCccCCCCeeEecCCCCCHHHHHHHHHHhccCCCCCCCHHHHHH
Q 003035 214 LEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLE 293 (855)
Q Consensus 214 ~~~~~~V~f~v~~~~~~aHr~vLaa~S~~F~~mf~~~~~E~~~~~I~l~~~~is~~~~~~ll~y~YTg~l~~~~~~~~~~ 293 (855)
++.+.||+|+|+|++|+|||+|||++|+||++ ...+|.+ +++++++|+.+|+|+|||++. ++.+++.+
T Consensus 27 ~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~---------~~~~i~l--~~v~~~~f~~ll~fiYtg~~~-i~~~~v~~ 94 (119)
T 3m5b_A 27 RPALCDTLITVGSQEFPAHSLVLAGVSQQLGR---------RGQWALG--EGISPSTFAQLLNFVYGESVE-LQPGELRP 94 (119)
T ss_dssp TTTTCCEEEEETTEEEEECHHHHHTTCGGGCC---------CEEEECC--SSCCHHHHHHHHHHHTTCCEE-ECGGGHHH
T ss_pred cCCCcceEEEECCEEEeeEHHHHHHcCHHHhc---------CCCEEEe--CCCCHHHHHHHHHHHcCCCcC-cCHHHHHH
Confidence 45667799999999999999999999999984 3457888 999999999999999999999 99999999
Q ss_pred HHHHhchhChHHHHHHHHHHHHh
Q 003035 294 LLSFANRFCCEEMKSACDAHLAS 316 (855)
Q Consensus 294 ll~~A~~~~~~~Lk~~C~~~l~~ 316 (855)
++.+|++|+++.|++.|++++++
T Consensus 95 ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 95 LQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp HHHHHHHTTCHHHHHHHHHHC--
T ss_pred HHHHHHHhCCHHHHHHHHHHHhh
Confidence 99999999999999999998865
No 90
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=6.8e-18 Score=180.53 Aligned_cols=248 Identities=12% Similarity=0.056 Sum_probs=189.5
Q ss_pred CCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHcc--------CC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCch
Q 003035 511 DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVF--------KL-SVDCLELRAWLFIAADDYESALRDTLALLALESNY 581 (855)
Q Consensus 511 dP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~--------~p-~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~ 581 (855)
+|....++..+|.++...|++++|+..+++++.. .| ...++..+|.+|...|++++|+..+++++......
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 5666778899999999999999999999999984 33 35667788999999999999999999988642110
Q ss_pred hhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 003035 582 MMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMR 661 (855)
Q Consensus 582 ~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~ 661 (855)
. -..+|.....+..+|.++...|++++|+.
T Consensus 103 ~--------------------------------------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 132 (311)
T 3nf1_A 103 L--------------------------------------------------GKDHPAVAATLNNLAVLYGKRGKYKEAEP 132 (311)
T ss_dssp H--------------------------------------------------CTTCHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred h--------------------------------------------------CCCChHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 0 00123334567788999999999999999
Q ss_pred HHHHHHhcC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------cCCh-HHHHHHHHHHHHCCCCc
Q 003035 662 CLRLARNHS--------SSEHERLVYEGWILYDTGHREEALSRAEKSISI--------ERTF-EAFFLKAYILADTNLDP 724 (855)
Q Consensus 662 ~l~~al~~~--------p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~--------~p~~-~a~~~lg~~~~~~g~~~ 724 (855)
.|+++++.. |....++..+|.++...|++++|+..|++++++ .|.. .++..+|.++...|+++
T Consensus 133 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 212 (311)
T 3nf1_A 133 LCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFK 212 (311)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHH
Confidence 999999874 667788999999999999999999999999998 5555 88999999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCC----CCCHH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHH
Q 003035 725 ESSTYVIQLLEEALRCPSD----GLRKG--------QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVY 790 (855)
Q Consensus 725 ~A~~~~~~lle~al~~~~~----~~~p~--------~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~ 790 (855)
+|+.. ++++++...+ ...+. ..+..++..+...+.+.+|...+++++... ...++..+|.++
T Consensus 213 ~A~~~----~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~ 288 (311)
T 3nf1_A 213 QAETL----YKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALY 288 (311)
T ss_dssp HHHHH----HHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHH
T ss_pred HHHHH----HHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHH
Confidence 99999 8888832100 01111 445555666677788888999999999877 888999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHccC
Q 003035 791 YLKNELKAAYDEMTKLLEKAQY 812 (855)
Q Consensus 791 ~~~g~~~~A~~~~~kal~~~p~ 812 (855)
..+|++++|++.|++++++.|+
T Consensus 289 ~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 289 RRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHCCCHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999885
No 91
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.74 E-value=1.1e-17 Score=170.56 Aligned_cols=174 Identities=10% Similarity=0.021 Sum_probs=153.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH----------------HHHHHHHCCCHHHHHHHHHHHHh
Q 003035 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVY----------------EGWILYDTGHREEALSRAEKSIS 702 (855)
Q Consensus 639 ~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~----------------lg~~~~~~g~~~eAl~~~~kal~ 702 (855)
....++..|..++..|++++|+..|+++++.+|+++++++. +|.++..+|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34567788999999999999999999999999999999999 99999999999999999999999
Q ss_pred ccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcC--CHHHHHHHHHHHHhc
Q 003035 703 IERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECG--KLDQAENCYINALDI 777 (855)
Q Consensus 703 ~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g--~~~~A~~~~~kAL~~ 777 (855)
++|++ .+++.+|.++...|++++|+.. |++++ .++|+ .+++++|.+|...| +.+.+...|++++..
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~----~~~al-----~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 153 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRM----YEKIL-----QLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP 153 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHH----HHHHH-----HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHH-----HcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCC
Confidence 99999 9999999999999999999999 99999 88888 99999999998776 456778888888876
Q ss_pred c-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh
Q 003035 778 K-HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE 822 (855)
Q Consensus 778 ~-~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~ 822 (855)
. ...+++++|.++...|++++|+..|+++++++|+. .+...+..
T Consensus 154 ~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~ 198 (208)
T 3urz_A 154 TKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDK 198 (208)
T ss_dssp CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHH
T ss_pred CchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHH
Confidence 6 55688999999999999999999999999999974 34444443
No 92
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.74 E-value=6.5e-18 Score=203.65 Aligned_cols=176 Identities=18% Similarity=0.098 Sum_probs=164.6
Q ss_pred HcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH--------hcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC
Q 003035 634 INDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLAR--------NHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIER 705 (855)
Q Consensus 634 ~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al--------~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p 705 (855)
..+|.++.+++..+ +..|++++|++.|++++ +.+|++.++++.+|.++..+|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 45788888887766 78999999999999999 89999999999999999999999999999999999999
Q ss_pred Ch-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cH
Q 003035 706 TF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HT 780 (855)
Q Consensus 706 ~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~ 780 (855)
++ .+++++|.++...|++++|+.. |++++ .++|+ .+++++|.++..+|++++ ++.|++|++++ ++
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~----~~~al-----~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~ 534 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKH----FTEVL-----DTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVI 534 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHH----HHHHH-----HHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHH----HHHHH-----HhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchH
Confidence 99 9999999999999999999999 99999 88888 999999999999999999 99999999998 89
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh
Q 003035 781 RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE 822 (855)
Q Consensus 781 ~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~ 822 (855)
.+++++|.++..+|++++|++.|+++++++|+++.++.++|.
T Consensus 535 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~ 576 (681)
T 2pzi_A 535 SAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAV 576 (681)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.74 E-value=3e-17 Score=172.89 Aligned_cols=197 Identities=10% Similarity=0.019 Sum_probs=170.2
Q ss_pred HHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCCC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhh
Q 003035 508 SELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS----VDCLELRAWLFIAADDYESALRDTLALLALESNYMM 583 (855)
Q Consensus 508 ~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~----~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~ 583 (855)
.+++|++...++.+|..++..|++++|+..|++++...|+ +.++..+|.+|..+|++++|+..|++++..+|++.
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~- 86 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP- 86 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc-
Confidence 4578999999999999999999999999999999999884 67888999999999999999999999999988642
Q ss_pred hhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHH--------cCC
Q 003035 584 FHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLR--------LNC 655 (855)
Q Consensus 584 ~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~--------~g~ 655 (855)
..+.+++.+|.++.. +|+
T Consensus 87 ------------------------------------------------------~~~~a~~~lg~~~~~~~~~~~~~~~~ 112 (261)
T 3qky_A 87 ------------------------------------------------------RVPQAEYERAMCYYKLSPPYELDQTD 112 (261)
T ss_dssp ------------------------------------------------------THHHHHHHHHHHHHHHCCCTTSCCHH
T ss_pred ------------------------------------------------------hhHHHHHHHHHHHHHhcccccccchh
Confidence 122346677778887 999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHH-----------------HHHHHHHHHCCCHHHHHHHHHHHHhccCC---h-HHHHHHH
Q 003035 656 QKAAMRCLRLARNHSSSEHERL-----------------VYEGWILYDTGHREEALSRAEKSISIERT---F-EAFFLKA 714 (855)
Q Consensus 656 ~~~A~~~l~~al~~~p~~~~~~-----------------~~lg~~~~~~g~~~eAl~~~~kal~~~p~---~-~a~~~lg 714 (855)
+++|+..|+++++.+|+++.+. +.+|.++..+|++++|+..|+++++.+|+ . .+++.+|
T Consensus 113 ~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~ 192 (261)
T 3qky_A 113 TRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAM 192 (261)
T ss_dssp HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHH
Confidence 9999999999999999886665 88999999999999999999999999998 4 8999999
Q ss_pred HHHHHC----------CCCchhHHHHHHHHHHHhcCCCCCCCHH-----HHHHHHHHHHHHcCCHHHHH
Q 003035 715 YILADT----------NLDPESSTYVIQLLEEALRCPSDGLRKG-----QALNNLGSIYVECGKLDQAE 768 (855)
Q Consensus 715 ~~~~~~----------g~~~~A~~~~~~lle~al~~~~~~~~p~-----~a~~~LG~~y~~~g~~~~A~ 768 (855)
.+|... |++++|+.. |++++ ...|+ .+...++.++...++++++.
T Consensus 193 ~~~~~~g~~~~~~~~~~~~~~A~~~----~~~~~-----~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 193 RAYIAYAEQSVRARQPERYRRAVEL----YERLL-----QIFPDSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHTSCGGGHHHHHHHHHHH----HHHHH-----HHCTTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHhcccchhhcccchHHHHHHH----HHHHH-----HHCCCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999977 888999999 99999 55555 77888888888887776554
No 94
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.73 E-value=1.4e-16 Score=172.09 Aligned_cols=219 Identities=8% Similarity=0.051 Sum_probs=201.1
Q ss_pred hHHHHHHHHHcCCCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCcHHHHHHHHHHH----HHC---CCHHHHHH
Q 003035 625 SLAVINQMLINDPGKSFLRFRQSLLLLRLN--CQKAAMRCLRLARNHSSSEHERLVYEGWIL----YDT---GHREEALS 695 (855)
Q Consensus 625 al~~~~~~l~~~p~~~~~~~~~a~~l~~~g--~~~~A~~~l~~al~~~p~~~~~~~~lg~~~----~~~---g~~~eAl~ 695 (855)
++....++|..+|++..++..++.++..+| +++++++.++.++..+|++..+|+.+++++ ... +++++++.
T Consensus 52 aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~ 131 (306)
T 3dra_A 52 ALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFD 131 (306)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHH
T ss_pred HHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHH
Confidence 567778888899999999999999999999 999999999999999999999999999999 777 89999999
Q ss_pred HHHHHHhccCCh-HHHHHHHHHHHHCCCCc--hhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCC------H
Q 003035 696 RAEKSISIERTF-EAFFLKAYILADTNLDP--ESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGK------L 764 (855)
Q Consensus 696 ~~~kal~~~p~~-~a~~~lg~~~~~~g~~~--~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~------~ 764 (855)
.++++++.+|.+ .+|+.++.++...|.++ ++++. +++++ ..+|. .+|++.+.+....|+ +
T Consensus 132 ~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~----~~~~i-----~~d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 132 ILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSF----VDKVI-----DTDLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHH----HHHHH-----HHCTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHH----HHHHH-----HhCCCCHHHHHHHHHHHHhccccchhhhH
Confidence 999999999999 99999999999999999 99999 99999 77887 999999999999987 9
Q ss_pred HHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHc---cCCHHHHHHHhh----cCCHHHHHHHHH
Q 003035 765 DQAENCYINALDIK--HTRAHQGLARVYYLKNELKA-AYDEMTKLLEKA---QYSASAFEKRSE----YSDREMAKNDLN 834 (855)
Q Consensus 765 ~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~-A~~~~~kal~~~---p~~~~a~~~lg~----~g~~eeA~~~~~ 834 (855)
+++++++++++..+ |..+++.++.++...|+... ......++++++ |.++.++..++. .|+.++|++.|+
T Consensus 203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 99999999999999 99999999999999997544 556777777776 889999999999 799999999999
Q ss_pred HHHh-cCCCCcccchhhhc
Q 003035 835 MATQ-LDPLRTYPYRYRAA 852 (855)
Q Consensus 835 kAl~-l~P~~~~~~~~~a~ 852 (855)
++.+ .||.+..-|+||+-
T Consensus 283 ~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 283 LLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHTTCGGGHHHHHHHHH
T ss_pred HHHhccChHHHHHHHHHHh
Confidence 9997 89999999999873
No 95
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.73 E-value=4.7e-16 Score=173.24 Aligned_cols=240 Identities=12% Similarity=0.054 Sum_probs=196.7
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHccCC---C----HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccc
Q 003035 517 PYKYRAVAKMEEGQIRAAISEIDRIIVFKL---S----VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS 589 (855)
Q Consensus 517 a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p---~----~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~ 589 (855)
.++++|..+...|++++|+..|++++...+ + ..++..+|.+|..+|+++.|+..+++++.+.+.....
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~----- 177 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY----- 177 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC-----
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc-----
Confidence 466789999999999999999999997532 2 3567788999999999999999999999765432100
Q ss_pred hhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003035 590 GDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH 669 (855)
Q Consensus 590 ~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~ 669 (855)
.+..+..+..+|.++...|++++|+..|++++++
T Consensus 178 ----------------------------------------------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~ 211 (378)
T 3q15_A 178 ----------------------------------------------SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALEL 211 (378)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 0011235677899999999999999999999986
Q ss_pred CC------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----ccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHH
Q 003035 670 SS------SEHERLVYEGWILYDTGHREEALSRAEKSIS-----IERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEA 737 (855)
Q Consensus 670 ~p------~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~-----~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~a 737 (855)
.+ ....++.++|.++..+|++++|+..|+++++ .+|.. .+++.+|.++...|++++|+.. ++++
T Consensus 212 ~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~----~~~a 287 (378)
T 3q15_A 212 AMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQF----IEEG 287 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHH----HHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHH----HHHH
Confidence 43 2346788999999999999999999999999 77777 9999999999999999999999 9999
Q ss_pred hcCCCCCCCHH--HHHHHHHHHHHHcCC---HHHHHHHHHHHHhcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Q 003035 738 LRCPSDGLRKG--QALNNLGSIYVECGK---LDQAENCYINALDIK-HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQ 811 (855)
Q Consensus 738 l~~~~~~~~p~--~a~~~LG~~y~~~g~---~~~A~~~~~kAL~~~-~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p 811 (855)
++.....-++. ..+..++.+|...|+ +.+|+..+++.-... ...++..+|.+|..+|++++|+.+|+++++...
T Consensus 288 l~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 367 (378)
T 3q15_A 288 LDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQE 367 (378)
T ss_dssp HHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 95543322333 667889999999999 888888888732222 556788999999999999999999999998754
No 96
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.72 E-value=9.3e-18 Score=154.72 Aligned_cols=92 Identities=13% Similarity=0.117 Sum_probs=83.8
Q ss_pred hhcCCCCCCcEEEEEcCeEEEeeehhhhcCCHHHHHhhcCCCccCCCCeeEecCCCCCHHHHHHHHHHhccCCCCCCCHH
Q 003035 210 VCLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPG 289 (855)
Q Consensus 210 ~~~~~~~~~~V~f~v~~~~~~aHr~vLaa~S~~F~~mf~~~~~E~~~~~I~l~~~~is~~~~~~ll~y~YTg~l~~~~~~ 289 (855)
+...++..+||+|+|+|+.|+|||.||+++|+||++||.++ ..+|.+ +++++++|+.+|+|+|||++..++.+
T Consensus 24 ~~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~-----~~~i~l--~~~~~~~f~~~l~~~Ytg~~~~~~~~ 96 (116)
T 3fkc_A 24 EQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA-----GQVVEL--SFIRAEIFAEILNYIYSSKIVRVRSD 96 (116)
T ss_dssp HHHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC-----CSEEEE--CSSCHHHHHHHHHHHTTSCCCSCCHH
T ss_pred HHHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEe--CCCCHHHHHHHHHhhcCCCcCCCCHH
Confidence 34456777789999999999999999999999999999876 568999 99999999999999999999339999
Q ss_pred HHHHHHHHhchhChHHHHH
Q 003035 290 IVLELLSFANRFCCEEMKS 308 (855)
Q Consensus 290 ~~~~ll~~A~~~~~~~Lk~ 308 (855)
++.+++.+|++|+++.|++
T Consensus 97 ~~~~ll~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 97 LLDELIKSGQLLGVKFIAA 115 (116)
T ss_dssp HHHHHHHHHHHHTCHHHHT
T ss_pred HHHHHHHHHHHhCccccCc
Confidence 9999999999999999874
No 97
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.71 E-value=6.7e-16 Score=171.08 Aligned_cols=274 Identities=12% Similarity=0.007 Sum_probs=214.1
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHccCCCH------hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccch
Q 003035 517 PYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV------DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSG 590 (855)
Q Consensus 517 a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~~------~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~ 590 (855)
.+..+|.++...|++++|+..+++++...|.. .++..+|.++...|++++|+..+++++.+.|......
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----- 90 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH----- 90 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH-----
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHH-----
Confidence 35667889999999999999999999876632 2456778999999999999999999997655421000
Q ss_pred hHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 003035 591 DHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHS 670 (855)
Q Consensus 591 ~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~ 670 (855)
.....+..+|.++..+|++++|+..++++++..
T Consensus 91 -----------------------------------------------~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 123 (373)
T 1hz4_A 91 -----------------------------------------------YALWSLIQQSEILFAQGFLQTAWETQEKAFQLI 123 (373)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 001234567888999999999999999999875
Q ss_pred --------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC-----h-HHHHHHHHHHHHCCCCchhHHHHHHHHHH
Q 003035 671 --------SSEHERLVYEGWILYDTGHREEALSRAEKSISIERT-----F-EAFFLKAYILADTNLDPESSTYVIQLLEE 736 (855)
Q Consensus 671 --------p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~-----~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~ 736 (855)
|....++..+|.++...|++++|...+++++++.|. . .++..+|.++...|++++|... +++
T Consensus 124 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~----l~~ 199 (373)
T 1hz4_A 124 NEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQ----LNR 199 (373)
T ss_dssp HHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHH----HHH
T ss_pred HHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHH----HHH
Confidence 445667788999999999999999999999998775 2 6788999999999999999999 888
Q ss_pred HhcCCCCCCC-HH-HHH--HHHHHHHHHcCCHHHHHHHHHHHHhcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003035 737 ALRCPSDGLR-KG-QAL--NNLGSIYVECGKLDQAENCYINALDIK------HTRAHQGLARVYYLKNELKAAYDEMTKL 806 (855)
Q Consensus 737 al~~~~~~~~-p~-~a~--~~LG~~y~~~g~~~~A~~~~~kAL~~~------~~~a~~~lg~~~~~~g~~~~A~~~~~ka 806 (855)
++........ .. ... ..++.++...|++++|...+++++... ...++..+|.++...|++++|...++++
T Consensus 200 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 200 LENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8743211111 12 222 245566889999999999999998765 1346788999999999999999999999
Q ss_pred HHHccCC------HHHHHHHhh----cCCHHHHHHHHHHHHhcCCCCccc
Q 003035 807 LEKAQYS------ASAFEKRSE----YSDREMAKNDLNMATQLDPLRTYP 846 (855)
Q Consensus 807 l~~~p~~------~~a~~~lg~----~g~~eeA~~~~~kAl~l~P~~~~~ 846 (855)
++..+.. ..++..+|. .|++++|...+++++.+.+..++.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~~ 329 (373)
T 1hz4_A 280 NENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFI 329 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccHH
Confidence 9876532 246666676 899999999999999987655443
No 98
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.71 E-value=2.9e-16 Score=175.00 Aligned_cols=234 Identities=14% Similarity=0.072 Sum_probs=189.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHH
Q 003035 550 CLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVI 629 (855)
Q Consensus 550 ~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~ 629 (855)
.+..+|..+...|++++|+..+++++.+.+...
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~----------------------------------------------- 135 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVS----------------------------------------------- 135 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCC-----------------------------------------------
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCC-----------------------------------------------
Confidence 355689999999999999999999997533210
Q ss_pred HHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 003035 630 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS-------EHERLVYEGWILYDTGHREEALSRAEKSIS 702 (855)
Q Consensus 630 ~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~-------~~~~~~~lg~~~~~~g~~~eAl~~~~kal~ 702 (855)
..|..+.+++.+|.++...|+++.|+.++++++++.+. ...++..+|.++..+|++++|+..|+++++
T Consensus 136 -----~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 210 (378)
T 3q15_A 136 -----DDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALE 210 (378)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----ChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 00122346778899999999999999999999987542 355778999999999999999999999999
Q ss_pred ccC---C--h--HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHH
Q 003035 703 IER---T--F--EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYIN 773 (855)
Q Consensus 703 ~~p---~--~--~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~k 773 (855)
+.+ + . .+++++|.+|..+|++++|+.. ++++++.......|. .++.++|.+|...|++++|+.++++
T Consensus 211 ~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~----~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 286 (378)
T 3q15_A 211 LAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEH----FQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEE 286 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH----HHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHH----HHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 743 2 2 7889999999999999999999 999992111114555 8999999999999999999999999
Q ss_pred HHhcc-------cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHccCCHHHHHHHhh----cCCHHHHHHHHHHHHhc
Q 003035 774 ALDIK-------HTRAHQGLARVYYLKNE---LKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQL 839 (855)
Q Consensus 774 AL~~~-------~~~a~~~lg~~~~~~g~---~~~A~~~~~kal~~~p~~~~a~~~lg~----~g~~eeA~~~~~kAl~l 839 (855)
++++. ....+..++.++...|+ +.+|+..+++ ....|+...++..+|. .|++++|..+|++++++
T Consensus 287 al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 287 GLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK-KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99974 24456778888888888 7888888776 2334455677888888 99999999999999986
Q ss_pred C
Q 003035 840 D 840 (855)
Q Consensus 840 ~ 840 (855)
.
T Consensus 366 ~ 366 (378)
T 3q15_A 366 Q 366 (378)
T ss_dssp H
T ss_pred H
Confidence 3
No 99
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.71 E-value=1.5e-16 Score=155.79 Aligned_cols=167 Identities=13% Similarity=0.079 Sum_probs=132.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHH
Q 003035 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILA 718 (855)
Q Consensus 640 ~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~ 718 (855)
...++.+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..++++++..|++ .++..+|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45567778888888888888888888888888888888888888888888888888888888888877 77888888888
Q ss_pred HCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcC
Q 003035 719 DTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKN 794 (855)
Q Consensus 719 ~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g 794 (855)
..|++++|... +++++ ...|. .++..+|.++...|++++|++.|+++++.. ++.++..+|.++..+|
T Consensus 88 ~~~~~~~A~~~----~~~~~-----~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 158 (186)
T 3as5_A 88 QVQKYDLAVPL----LIKVA-----EANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMG 158 (186)
T ss_dssp HHTCHHHHHHH----HHHHH-----HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HhcCHHHHHHH----HHHHH-----hcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcC
Confidence 88888888888 88777 55554 677777878878888888888888777776 6777777787777777
Q ss_pred CHHHHHHHHHHHHHHccCCHH
Q 003035 795 ELKAAYDEMTKLLEKAQYSAS 815 (855)
Q Consensus 795 ~~~~A~~~~~kal~~~p~~~~ 815 (855)
++++|+..++++++..|++..
T Consensus 159 ~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 159 RHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp CHHHHHHHHHHHHHHHHCCCG
T ss_pred CHHHHHHHHHHHHHcCCCchh
Confidence 888888887777777776543
No 100
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.70 E-value=4e-15 Score=164.84 Aligned_cols=309 Identities=12% Similarity=0.020 Sum_probs=215.0
Q ss_pred HHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhcch-------hhhhhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHH
Q 003035 418 RMLALHQLGCVMFEREEYKDACYYFEAAADAGHI-------YSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQE 490 (855)
Q Consensus 418 ~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~~-------~a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~ 490 (855)
...++..+|.+++.+|++++|+..+++++...+. .++..+|.++..+|+++.|...+++++...+..+..+..
T Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 92 (373)
T 1hz4_A 13 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 92 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4556778899999999999999999999876322 246678888999999999988888887665543322110
Q ss_pred HhhccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccC--------CC-HhHHHHHHHHHHHc
Q 003035 491 RSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFK--------LS-VDCLELRAWLFIAA 561 (855)
Q Consensus 491 ~~~~~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~--------p~-~~~l~lra~~y~~~ 561 (855)
..++..+|.++...|++++|+..+++++... |. ...+..+|.++...
T Consensus 93 ------------------------~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 148 (373)
T 1hz4_A 93 ------------------------LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW 148 (373)
T ss_dssp ------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHT
T ss_pred ------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHh
Confidence 1235678999999999999999999999753 21 23456689999999
Q ss_pred CCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChH
Q 003035 562 DDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSF 641 (855)
Q Consensus 562 gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~ 641 (855)
|++++|+..+++++...|.... +....
T Consensus 149 g~~~~A~~~~~~al~~~~~~~~-----------------------------------------------------~~~~~ 175 (373)
T 1hz4_A 149 ARLDEAEASARSGIEVLSSYQP-----------------------------------------------------QQQLQ 175 (373)
T ss_dssp TCHHHHHHHHHHHHHHTTTSCG-----------------------------------------------------GGGHH
T ss_pred cCHHHHHHHHHHHHHHhhccCc-----------------------------------------------------HHHHH
Confidence 9999999999999987665210 00112
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--cH-HHH----HHHHHHHHHCCCHHHHHHHHHHHHhccCCh-----HH
Q 003035 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSS--EH-ERL----VYEGWILYDTGHREEALSRAEKSISIERTF-----EA 709 (855)
Q Consensus 642 ~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~--~~-~~~----~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-----~a 709 (855)
.+..+|.++...|++++|...+++++.+.+. .+ ... ..++.++...|++++|...+++++...|.. ..
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 4556788899999999999999999876332 21 111 134566889999999999999998877642 35
Q ss_pred HHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCH-H--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcccHHHHHHH
Q 003035 710 FFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK-G--QALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGL 786 (855)
Q Consensus 710 ~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p-~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~~~~a~~~l 786 (855)
+..+|.++...|++++|... +++++......-.+ . .++..+|.++...|++++|...+++++.+... .+.
T Consensus 256 ~~~la~~~~~~g~~~~A~~~----l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~---~g~ 328 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIV----LEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR---TGF 328 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHH----HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---HCC
T ss_pred HHHHHHHHHHcCCHHHHHHH----HHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc---ccH
Confidence 67788888888888888888 77776221111111 1 56777788888888888888888887775510 011
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHccC
Q 003035 787 ARVYYLKNELKAAYDEMTKLLEKAQY 812 (855)
Q Consensus 787 g~~~~~~g~~~~A~~~~~kal~~~p~ 812 (855)
...+...| +.....+++.+...|-
T Consensus 329 ~~~~~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 329 ISHFVIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp CHHHHTTH--HHHHHHHHHHHHTTCS
T ss_pred HHHHHHcc--HHHHHHHHHHHhCCCC
Confidence 11222222 4455556666655553
No 101
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.70 E-value=7.6e-17 Score=173.45 Aligned_cols=189 Identities=11% Similarity=0.006 Sum_probs=159.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-------HHHHH
Q 003035 646 QSLLLLRLNCQKAAMRCLRLARNHSS------SEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-------EAFFL 712 (855)
Q Consensus 646 ~a~~l~~~g~~~~A~~~l~~al~~~p------~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-------~a~~~ 712 (855)
.|.++..+|++++|+..|++++++.+ ..+.++.++|.++..+|++++|+..|++++++.|.. .++.+
T Consensus 43 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~ 122 (292)
T 1qqe_A 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (292)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 36678899999999999999999853 236788999999999999999999999999997642 57899
Q ss_pred HHHHHHHC-CCCchhHHHHHHHHHHHhcCCCCCCCHH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cH-
Q 003035 713 KAYILADT-NLDPESSTYVIQLLEEALRCPSDGLRKG--------QALNNLGSIYVECGKLDQAENCYINALDIK--HT- 780 (855)
Q Consensus 713 lg~~~~~~-g~~~~A~~~~~~lle~al~~~~~~~~p~--------~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~- 780 (855)
+|.+|... |++++|+.. |++++ .+.|. .++.++|.++..+|++++|+.+|++++++. +.
T Consensus 123 lg~~~~~~lg~~~~A~~~----~~~Al-----~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 193 (292)
T 1qqe_A 123 LGEILENDLHDYAKAIDC----YELAG-----EWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL 193 (292)
T ss_dssp HHHHHHHTTCCHHHHHHH----HHHHH-----HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred HHHHHHHhhcCHHHHHHH----HHHHH-----HHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc
Confidence 99999996 999999999 99999 54442 679999999999999999999999999987 22
Q ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHH-----HHHHhh------cCCHHHHHHHHHHHHhcCCCC
Q 003035 781 ------RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASA-----FEKRSE------YSDREMAKNDLNMATQLDPLR 843 (855)
Q Consensus 781 ------~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a-----~~~lg~------~g~~eeA~~~~~kAl~l~P~~ 843 (855)
.++.++|.++..+|++++|+..|+++++++|++... +..++. .+++++|+..|++++.++|..
T Consensus 194 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 194 SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 268999999999999999999999999999987764 333433 678999999999999998865
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.70 E-value=1.3e-16 Score=192.24 Aligned_cols=196 Identities=14% Similarity=-0.023 Sum_probs=146.1
Q ss_pred HhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHH--------ccCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 003035 509 ELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRII--------VFKL-SVDCLELRAWLFIAADDYESALRDTLALLALES 579 (855)
Q Consensus 509 ~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l--------~~~p-~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P 579 (855)
.++|+++.+++..+ ...|++++|++.+++++ ..+| +.+.+..+|.++..+|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 45788888777766 67888888888888888 6667 456777788888888888888887777776544
Q ss_pred chhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHH
Q 003035 580 NYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAA 659 (855)
Q Consensus 580 ~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A 659 (855)
+ +..+++.+|.++..+|++++|
T Consensus 465 ~----------------------------------------------------------~~~a~~~lg~~~~~~g~~~~A 486 (681)
T 2pzi_A 465 W----------------------------------------------------------RWRLVWYRAVAELLTGDYDSA 486 (681)
T ss_dssp C----------------------------------------------------------CHHHHHHHHHHHHHHTCHHHH
T ss_pred c----------------------------------------------------------hHHHHHHHHHHHHHcCCHHHH
Confidence 3 344566777788888888888
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHh
Q 003035 660 MRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEAL 738 (855)
Q Consensus 660 ~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al 738 (855)
++.|+++++++|+++.+++++|.++..+|++++ +..|+++++++|++ .+++++|.++...|++++|+.. |++++
T Consensus 487 ~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~----~~~al 561 (681)
T 2pzi_A 487 TKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT----LDEVP 561 (681)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH----HHTSC
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH----HHhhc
Confidence 888888888888888888888888888888888 88888888888888 8888888888888888888888 88888
Q ss_pred cCCCCCCCHH--HHHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 003035 739 RCPSDGLRKG--QALNNLGSIYVECGKLDQA-ENCYINAL 775 (855)
Q Consensus 739 ~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A-~~~~~kAL 775 (855)
.++|+ .++.++|.++...|+.++| .+.+++|+
T Consensus 562 -----~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~ 596 (681)
T 2pzi_A 562 -----PTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAA 596 (681)
T ss_dssp -----TTSTTHHHHHHHHHHHTC-------CCHHHHHHHH
T ss_pred -----ccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHH
Confidence 77777 7888888887776653333 33444433
No 103
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.70 E-value=3e-16 Score=153.75 Aligned_cols=167 Identities=15% Similarity=0.080 Sum_probs=157.6
Q ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--
Q 003035 672 SEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG-- 748 (855)
Q Consensus 672 ~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~-- 748 (855)
.....++.+|.++...|++++|+..++++++..|++ .+++.+|.++...|++++|+.. +++++ ...|.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~----~~~~~-----~~~~~~~ 76 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTEL----LERSL-----ADAPDNV 76 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHH----HHHHH-----HHCTTCH
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHH----HHHHH-----hcCCCCH
Confidence 345778899999999999999999999999999999 9999999999999999999999 99999 66666
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh----
Q 003035 749 QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE---- 822 (855)
Q Consensus 749 ~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~---- 822 (855)
.++..+|.++...|++++|++.|+++++.. ++.++..+|.++...|++++|+..++++++..|+++.++..+|.
T Consensus 77 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 156 (186)
T 3as5_A 77 KVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQ 156 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 899999999999999999999999999998 89999999999999999999999999999999999999999998
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcccc
Q 003035 823 YSDREMAKNDLNMATQLDPLRTYPY 847 (855)
Q Consensus 823 ~g~~eeA~~~~~kAl~l~P~~~~~~ 847 (855)
.|++++|+..++++++++|++...+
T Consensus 157 ~~~~~~A~~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 157 MGRHEEALPHFKKANELDEGASVEL 181 (186)
T ss_dssp TTCHHHHHHHHHHHHHHHHCCCGGG
T ss_pred cCCHHHHHHHHHHHHHcCCCchhhH
Confidence 9999999999999999999887554
No 104
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.69 E-value=2.1e-16 Score=170.05 Aligned_cols=248 Identities=10% Similarity=-0.030 Sum_probs=189.2
Q ss_pred hHHHHHHHHHHhCCCCchhHHHHHHHHHHh---CCHHHHHHHHHHHHccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003035 499 EKIVDLNYASELDPTLSFPYKYRAVAKMEE---GQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALL 575 (855)
Q Consensus 499 ~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~---~~~~~A~~~~~k~l~~~p~~~~l~lra~~y~~~gd~~~A~~~~~~aL 575 (855)
+|.+.+.+|-+.-++....+ .++.. +++++|+..|+++ |.+|...|++++|+..|++++
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a-------------~~~~~~~g~~~~A~~~~~~al 64 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM-----KLFSGSDSYKFEEAADLCVQA-------------ATIYRLRKELNLAGDSFLKAA 64 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH-----HHHSCCSHHHHHHHHHHHHHH-------------HHHHHHTTCTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcc-----hhcCCCCCccHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHHHH
Confidence 45556666666665532111 12232 2599999998887 567889999999999999999
Q ss_pred hcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCC
Q 003035 576 ALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNC 655 (855)
Q Consensus 576 ~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~ 655 (855)
.+.+... . .+..+.++..+|.++..+|+
T Consensus 65 ~~~~~~~--------------------~--------------------------------~~~~a~~~~~lg~~~~~~g~ 92 (292)
T 1qqe_A 65 DYQKKAG--------------------N--------------------------------EDEAGNTYVEAYKCFKSGGN 92 (292)
T ss_dssp HHHHHTT--------------------C--------------------------------HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhC--------------------C--------------------------------HHHHHHHHHHHHHHHHHCCC
Confidence 7543210 0 00112356678999999999
Q ss_pred HHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHC-CCHHHHHHHHHHHHhccCCh-------HHHHHHHHHHHHCC
Q 003035 656 QKAAMRCLRLARNHSSSE------HERLVYEGWILYDT-GHREEALSRAEKSISIERTF-------EAFFLKAYILADTN 721 (855)
Q Consensus 656 ~~~A~~~l~~al~~~p~~------~~~~~~lg~~~~~~-g~~~eAl~~~~kal~~~p~~-------~a~~~lg~~~~~~g 721 (855)
+++|+.+|++++++.|.. ..++..+|.+|..+ |++++|+..|++++++.|.. .++.++|.++..+|
T Consensus 93 ~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g 172 (292)
T 1qqe_A 93 SVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG 172 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhC
Confidence 999999999999987653 56789999999996 99999999999999998742 56889999999999
Q ss_pred CCchhHHHHHHHHHHHhcCCCCCCCH--H--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cH-----HHHHHHHHHH
Q 003035 722 LDPESSTYVIQLLEEALRCPSDGLRK--G--QALNNLGSIYVECGKLDQAENCYINALDIK--HT-----RAHQGLARVY 790 (855)
Q Consensus 722 ~~~~A~~~~~~lle~al~~~~~~~~p--~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~-----~a~~~lg~~~ 790 (855)
++++|+.. |+++++...+.... . .++.++|.++..+|++++|+.+|+++++++ .. ..+..++..+
T Consensus 173 ~~~~A~~~----~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~ 248 (292)
T 1qqe_A 173 QYIEASDI----YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAV 248 (292)
T ss_dssp CHHHHHHH----HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHH
T ss_pred CHHHHHHH----HHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 99999999 99999544332221 1 478999999999999999999999999987 22 2355666666
Q ss_pred H--HcCCHHHHHHHHHHHHHHccCCHHHHHHH
Q 003035 791 Y--LKNELKAAYDEMTKLLEKAQYSASAFEKR 820 (855)
Q Consensus 791 ~--~~g~~~~A~~~~~kal~~~p~~~~a~~~l 820 (855)
. ..+++++|+..|++++.++|.+...+..+
T Consensus 249 ~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~ 280 (292)
T 1qqe_A 249 NEGDSEQLSEHCKEFDNFMRLDKWKITILNKI 280 (292)
T ss_dssp HTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHhccCCccHHHHHHHHHHH
Confidence 4 34689999999999999998876665544
No 105
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.69 E-value=5.1e-15 Score=159.78 Aligned_cols=179 Identities=9% Similarity=0.040 Sum_probs=136.9
Q ss_pred chHHHHHHHHHHhCCCCchhHHHHHHHHHHhC--CHHHHHHHHHHHHccCC-CHhHHHHHHHHH----HHc---CCHHHH
Q 003035 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEG--QIRAAISEIDRIIVFKL-SVDCLELRAWLF----IAA---DDYESA 567 (855)
Q Consensus 498 ~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~--~~~~A~~~~~k~l~~~p-~~~~l~lra~~y----~~~---gd~~~A 567 (855)
++|+..++++++++|++..+|.+|+.++...+ ++++|+..++++|..+| +..++..|+++. ... ++++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 46788888888888888888888888888877 88888888888888877 466777777666 443 334443
Q ss_pred HHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHH
Q 003035 568 LRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQS 647 (855)
Q Consensus 568 ~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a 647 (855)
++ .+.++++.+|.+..++..++
T Consensus 130 L~----------------------------------------------------------~~~~~l~~~pkny~aW~~R~ 151 (306)
T 3dra_A 130 FD----------------------------------------------------------ILEAMLSSDPKNHHVWSYRK 151 (306)
T ss_dssp HH----------------------------------------------------------HHHHHHHHCTTCHHHHHHHH
T ss_pred HH----------------------------------------------------------HHHHHHHhCCCCHHHHHHHH
Confidence 33 34445555566666677777
Q ss_pred HHHHHcCCHH--HHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC------HHHHHHHHHHHHhccCCh-HHHHHHHHHHH
Q 003035 648 LLLLRLNCQK--AAMRCLRLARNHSSSEHERLVYEGWILYDTGH------REEALSRAEKSISIERTF-EAFFLKAYILA 718 (855)
Q Consensus 648 ~~l~~~g~~~--~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~------~~eAl~~~~kal~~~p~~-~a~~~lg~~~~ 718 (855)
.++...|.++ ++++.++++++.+|.+..+|.+++.++...|+ +++++..++++|..+|++ .+|+.++.++.
T Consensus 152 ~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~ 231 (306)
T 3dra_A 152 WLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHE 231 (306)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Confidence 7777778777 88888888888899888898888888888887 888888888999888888 88888888888
Q ss_pred HCCCCchhHH-HHHHHHHHHh
Q 003035 719 DTNLDPESST-YVIQLLEEAL 738 (855)
Q Consensus 719 ~~g~~~~A~~-~~~~lle~al 738 (855)
..|+..+++. . .++++
T Consensus 232 ~~~~~~~~~~~~----~~~~~ 248 (306)
T 3dra_A 232 RFDRSITQLEEF----SLQFV 248 (306)
T ss_dssp HTTCCGGGGHHH----HHTTE
T ss_pred hcCCChHHHHHH----HHHHH
Confidence 8888666554 4 55555
No 106
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.69 E-value=3.8e-16 Score=159.17 Aligned_cols=191 Identities=16% Similarity=0.020 Sum_probs=151.4
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHH
Q 003035 548 VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLA 627 (855)
Q Consensus 548 ~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~ 627 (855)
.+.+..+|..+...|++++|+..|++++..+|++...+.... . ...
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~-----------~---~~~-------------------- 49 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTN-----------V---DKN-------------------- 49 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHH-----------S---CTT--------------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhh-----------h---cch--------------------
Confidence 445566788888888888888888888888887643211100 0 000
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh
Q 003035 628 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (855)
Q Consensus 628 ~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~ 707 (855)
....+.+.+.+|.++...|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..|+++++++|++
T Consensus 50 --------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~ 121 (208)
T 3urz_A 50 --------SEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN 121 (208)
T ss_dssp --------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred --------hhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 000123456789999999999999999999999999999999999999999999999999999999999999
Q ss_pred -HHHHHHHHHHHHCCCC--chhHHHHHHHHHHHhcCCCCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-cHHH
Q 003035 708 -EAFFLKAYILADTNLD--PESSTYVIQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDIK-HTRA 782 (855)
Q Consensus 708 -~a~~~lg~~~~~~g~~--~~A~~~~~~lle~al~~~~~~~~p~-~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~-~~~a 782 (855)
.+++++|.+|...|+. ..+... +++++ ...|. .+++++|.++...|++++|+.+|++|++++ +..+
T Consensus 122 ~~a~~~lg~~~~~~~~~~~~~~~~~----~~~~~-----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~ 192 (208)
T 3urz_A 122 LAANIFLGNYYYLTAEQEKKKLETD----YKKLS-----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEA 192 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HC--------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH----HHHHh-----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHH
Confidence 9999999999877643 344555 88887 66666 788999999999999999999999999999 7766
Q ss_pred HHHHHHH
Q 003035 783 HQGLARV 789 (855)
Q Consensus 783 ~~~lg~~ 789 (855)
...+..+
T Consensus 193 ~~~l~~i 199 (208)
T 3urz_A 193 QKTLDKI 199 (208)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666655
No 107
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.67 E-value=6.2e-16 Score=162.35 Aligned_cols=185 Identities=17% Similarity=0.178 Sum_probs=157.0
Q ss_pred HcCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc--------CCh-HHHHHHH
Q 003035 652 RLNCQKAAMRCLRLARNH--------SSSEHERLVYEGWILYDTGHREEALSRAEKSISIE--------RTF-EAFFLKA 714 (855)
Q Consensus 652 ~~g~~~~A~~~l~~al~~--------~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~--------p~~-~a~~~lg 714 (855)
..|++++|+..|+++++. .|..+.++..+|.++...|++++|+..|++++++. |.. .++..+|
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 456666677777776663 36678899999999999999999999999999884 444 8899999
Q ss_pred HHHHHCCCCchhHHHHHHHHHHHhcCCCC---CCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------c--c
Q 003035 715 YILADTNLDPESSTYVIQLLEEALRCPSD---GLRKG--QALNNLGSIYVECGKLDQAENCYINALDI--------K--H 779 (855)
Q Consensus 715 ~~~~~~g~~~~A~~~~~~lle~al~~~~~---~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~--------~--~ 779 (855)
.++...|++++|+.. ++++++.... ...|. .++.++|.+|...|++++|+.+|++++++ . .
T Consensus 93 ~~~~~~g~~~~A~~~----~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 168 (283)
T 3edt_B 93 VLYGKRGKYKEAEPL----CKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV 168 (283)
T ss_dssp HHHHTTTCHHHHHHH----HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHhccHHHHHHH----HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 999999999999999 8888822100 11355 89999999999999999999999999998 4 5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-------------------------------------------------
Q 003035 780 TRAHQGLARVYYLKNELKAAYDEMTKLLEKA------------------------------------------------- 810 (855)
Q Consensus 780 ~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~------------------------------------------------- 810 (855)
..++.++|.++..+|++++|+..+++++++.
T Consensus 169 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (283)
T 3edt_B 169 AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDS 248 (283)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCC
Confidence 7789999999999999999999999999872
Q ss_pred cCCHHHHHHHhh----cCCHHHHHHHHHHHHhcC
Q 003035 811 QYSASAFEKRSE----YSDREMAKNDLNMATQLD 840 (855)
Q Consensus 811 p~~~~a~~~lg~----~g~~eeA~~~~~kAl~l~ 840 (855)
|+.+.++..+|. .|++++|+..|++++++.
T Consensus 249 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 249 PTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 445667888888 999999999999999863
No 108
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.65 E-value=9.2e-17 Score=154.98 Aligned_cols=139 Identities=6% Similarity=-0.009 Sum_probs=68.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCch
Q 003035 647 SLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPE 725 (855)
Q Consensus 647 a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~ 725 (855)
|.++...|++++|++.+++++..+|+++..++.+|.+|+.+|++++|+..|+++++++|++ .+|+.+|.+|...|++++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHH
Confidence 3444444555555555555555555555555555555555555555555555555555555 555555555555555555
Q ss_pred hHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHH-HHHHHhcc--cHHHHHHHHHHHHHcC
Q 003035 726 SSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENC-YINALDIK--HTRAHQGLARVYYLKN 794 (855)
Q Consensus 726 A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~-~~kAL~~~--~~~a~~~lg~~~~~~g 794 (855)
|+.. |++++ .++|+ .+++++|.+|...|++++|.+. +++|++++ ++.++..++.++..+|
T Consensus 84 A~~~----~~~al-----~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVEC----YRRSV-----ELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHH----HHHHH-----HHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHH----HHHHH-----HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 5555 55555 44444 4444444444444444443333 24444444 4444444444444444
No 109
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.65 E-value=1.2e-16 Score=154.18 Aligned_cols=135 Identities=13% Similarity=0.133 Sum_probs=110.5
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHH
Q 003035 679 YEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLG 755 (855)
Q Consensus 679 ~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG 755 (855)
.||.++...|++++|+..+++++..+|++ .+++.+|.+|...|++++|+.. |++++ .++|+ .+|.++|
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~----~~~al-----~~~p~~~~a~~~lg 72 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKY----ICTYI-----NVQERDPKAHRFLG 72 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHH----HHHHH-----HHCTTCHHHHHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHH----HHHHH-----HhCCCCHHHHHHHH
Confidence 36788888888888888888888888888 8888888888888888888888 88888 77777 8888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHHccCCHHHHHHHhh
Q 003035 756 SIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDE-MTKLLEKAQYSASAFEKRSE 822 (855)
Q Consensus 756 ~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~-~~kal~~~p~~~~a~~~lg~ 822 (855)
.+|...|++++|+.+|+++++++ ++.+++++|.++..+|++++|.+. ++++++++|+++.++..++.
T Consensus 73 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ 142 (150)
T 4ga2_A 73 LLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQ 142 (150)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 88888888888888888888888 788888888888888888776655 58888888888888877665
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.65 E-value=1.1e-14 Score=149.97 Aligned_cols=180 Identities=9% Similarity=0.014 Sum_probs=142.3
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh----HHHH
Q 003035 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFF 711 (855)
Q Consensus 639 ~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~---~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~----~a~~ 711 (855)
.+..++.+|..+++.|++++|+..|+++++..|++ ..+++.+|.+++.+|++++|+..|+++++.+|++ .+++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 35578889999999999999999999999998876 4789999999999999999999999999999987 4899
Q ss_pred HHHHHHHHC------------------CCCchhHHHHHHHHHHHhcCCCCCCCHH-----HHHHHHHHHHHHcCCHHHHH
Q 003035 712 LKAYILADT------------------NLDPESSTYVIQLLEEALRCPSDGLRKG-----QALNNLGSIYVECGKLDQAE 768 (855)
Q Consensus 712 ~lg~~~~~~------------------g~~~~A~~~~~~lle~al~~~~~~~~p~-----~a~~~LG~~y~~~g~~~~A~ 768 (855)
.+|.++... |++++|+.. |++++ ...|+ .+...++.+...
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~----~~~~l-----~~~P~~~~a~~a~~~l~~~~~~-------- 145 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSD----FSKLV-----RGYPNSQYTTDATKRLVFLKDR-------- 145 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHH----HHHHH-----TTCTTCTTHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHH----HHHHH-----HHCcCChhHHHHHHHHHHHHHH--------
Confidence 999998863 455555555 66666 44444 122111111110
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCH---HHHHHHhh----cCCHHHHHHHHHHHHhcCC
Q 003035 769 NCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSA---SAFEKRSE----YSDREMAKNDLNMATQLDP 841 (855)
Q Consensus 769 ~~~~kAL~~~~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~---~a~~~lg~----~g~~eeA~~~~~kAl~l~P 841 (855)
.....+.+|.++..+|++++|+..|+++++..|+++ .++..+|. .|++++|+..++++....|
T Consensus 146 ----------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 146 ----------LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ----------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ----------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 112336788899999999999999999999999886 66888888 8999999999999998888
Q ss_pred CCcc
Q 003035 842 LRTY 845 (855)
Q Consensus 842 ~~~~ 845 (855)
+.+.
T Consensus 216 ~~~~ 219 (225)
T 2yhc_A 216 NTLE 219 (225)
T ss_dssp CCCC
T ss_pred Cchh
Confidence 7753
No 111
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.63 E-value=1.1e-14 Score=158.21 Aligned_cols=215 Identities=12% Similarity=0.074 Sum_probs=193.4
Q ss_pred hHHHHHHHHHcCCCChHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC--HHH
Q 003035 625 SLAVINQMLINDPGKSFLRFRQSLLLLRLNC----------QKAAMRCLRLARNHSSSEHERLVYEGWILYDTGH--REE 692 (855)
Q Consensus 625 al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~----------~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~--~~e 692 (855)
++.....++..+|++..++..++.++...++ +++++..++.++..+|+++.+|..+++++...|+ +++
T Consensus 49 aL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~ 128 (331)
T 3dss_A 49 VLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWAR 128 (331)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHH
T ss_pred HHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHH
Confidence 6788899999999999999999998887776 6899999999999999999999999999999994 999
Q ss_pred HHHHHHHHHhccCCh-HHHHHHHHHHHHCCCC-chhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHc-------
Q 003035 693 ALSRAEKSISIERTF-EAFFLKAYILADTNLD-PESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVEC------- 761 (855)
Q Consensus 693 Al~~~~kal~~~p~~-~a~~~lg~~~~~~g~~-~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~------- 761 (855)
++..+.++++.+|.+ .+|...+.++...|.+ ++++++ +++++ ..+|. .+|+++|.++...
T Consensus 129 EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~----~~~~I-----~~~p~N~SAW~~R~~ll~~l~~~~~~~ 199 (331)
T 3dss_A 129 ELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF----TDSLI-----TRNFSNYSSWHYRSCLLPQLHPQPDSG 199 (331)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH----HHHHH-----HHCSCCHHHHHHHHHHHHHHSCCC---
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHH----HHHHH-----HHCCCCHHHHHHHHHHHHHhhhccccc
Confidence 999999999999999 9999999999999985 899999 99999 77777 9999999999887
Q ss_pred -------CCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHccCCHHHHHHHh
Q 003035 762 -------GKLDQAENCYINALDIK--HTRAHQGLARVYYLK-----------NELKAAYDEMTKLLEKAQYSASAFEKRS 821 (855)
Q Consensus 762 -------g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~-----------g~~~~A~~~~~kal~~~p~~~~a~~~lg 821 (855)
+.++++++++.+++.++ |..+++.+.+++... +.++++++.+++++++.|++...+..++
T Consensus 200 ~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~ 279 (331)
T 3dss_A 200 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTII 279 (331)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHH
Confidence 56899999999999999 999998777776665 4588999999999999999987776665
Q ss_pred h-------cCCHHHHHHHHHHHHhcCCCCcccch
Q 003035 822 E-------YSDREMAKNDLNMATQLDPLRTYPYR 848 (855)
Q Consensus 822 ~-------~g~~eeA~~~~~kAl~l~P~~~~~~~ 848 (855)
. .|..++...++.+.+++||.+.-=|+
T Consensus 280 ~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~ 313 (331)
T 3dss_A 280 LLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 313 (331)
T ss_dssp HHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHhhcccccHHHHHHHHHHHHHhCcchhhHHH
Confidence 4 68889999999999999998865443
No 112
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.63 E-value=4e-15 Score=156.10 Aligned_cols=179 Identities=19% Similarity=0.145 Sum_probs=153.3
Q ss_pred HHHHHHHcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Q 003035 628 VINQMLIND-PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH--------SSSEHERLVYEGWILYDTGHREEALSRAE 698 (855)
Q Consensus 628 ~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~--------~p~~~~~~~~lg~~~~~~g~~~eAl~~~~ 698 (855)
.+.+....+ |....+++.+|.++...|++++|+..|+++++. .|....++..+|.++..+|++++|+..|+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 109 (283)
T 3edt_B 30 DLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCK 109 (283)
T ss_dssp HHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 333443333 667888999999999999999999999999987 46678889999999999999999999999
Q ss_pred HHHhc--------cCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCC---CCCCHH--HHHHHHHHHHHHcCCH
Q 003035 699 KSISI--------ERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPS---DGLRKG--QALNNLGSIYVECGKL 764 (855)
Q Consensus 699 kal~~--------~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~---~~~~p~--~a~~~LG~~y~~~g~~ 764 (855)
+++++ +|.. .++..+|.++...|++++|+.. ++++++... ....|. .++.++|.+|..+|++
T Consensus 110 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~----~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 185 (283)
T 3edt_B 110 RALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYY----YRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKY 185 (283)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHH----HHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHH----HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH
Confidence 99998 3555 9999999999999999999999 999983210 011555 8999999999999999
Q ss_pred HHHHHHHHHHHhc------------------------------------------------c---cHHHHHHHHHHHHHc
Q 003035 765 DQAENCYINALDI------------------------------------------------K---HTRAHQGLARVYYLK 793 (855)
Q Consensus 765 ~~A~~~~~kAL~~------------------------------------------------~---~~~a~~~lg~~~~~~ 793 (855)
++|+..|++++++ . ...++..+|.++..+
T Consensus 186 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 265 (283)
T 3edt_B 186 QDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQ 265 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc
Confidence 9999999999986 2 456889999999999
Q ss_pred CCHHHHHHHHHHHHHHc
Q 003035 794 NELKAAYDEMTKLLEKA 810 (855)
Q Consensus 794 g~~~~A~~~~~kal~~~ 810 (855)
|++++|+..|+++++..
T Consensus 266 g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 266 GKLEAAHTLEDCASRNR 282 (283)
T ss_dssp TCHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999998753
No 113
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.61 E-value=1.9e-15 Score=149.41 Aligned_cols=163 Identities=14% Similarity=0.065 Sum_probs=141.0
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHH
Q 003035 637 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAY 715 (855)
Q Consensus 637 p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~ 715 (855)
|.....++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..++++++.+| + ..+..++.
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~ 81 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAK 81 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHH
Confidence 444456788899999999999999999999999999999999999999999999999999999999999 6 55555554
Q ss_pred H-HHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc----cHHHHHHHHH
Q 003035 716 I-LADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK----HTRAHQGLAR 788 (855)
Q Consensus 716 ~-~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~----~~~a~~~lg~ 788 (855)
+ +...+...+|+.. +++++ ..+|+ .+++++|.++...|++++|+..|+++++++ ++.++.++|.
T Consensus 82 ~~~~~~~~~~~a~~~----~~~al-----~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~ 152 (176)
T 2r5s_A 82 LELHQQAAESPELKR----LEQEL-----AANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMD 152 (176)
T ss_dssp HHHHHHHTSCHHHHH----HHHHH-----HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHH
T ss_pred HHHHhhcccchHHHH----HHHHH-----HhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHH
Confidence 4 3344455667888 99999 88887 899999999999999999999999999998 3669999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHH
Q 003035 789 VYYLKNELKAAYDEMTKLLEK 809 (855)
Q Consensus 789 ~~~~~g~~~~A~~~~~kal~~ 809 (855)
++..+|+.++|+..|++++..
T Consensus 153 ~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 153 ILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp HHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHhCCCCcHHHHHHHHHHH
Confidence 999999999999999998853
No 114
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.61 E-value=1.1e-14 Score=156.39 Aligned_cols=166 Identities=13% Similarity=0.033 Sum_probs=156.0
Q ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHH
Q 003035 635 NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLK 713 (855)
Q Consensus 635 ~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~l 713 (855)
..|.+...++.+|..+.+.|++++|+..|+++++.+|+++++++.+|.++..+|++++|+..+++++..+|+. ......
T Consensus 112 ~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 112 VLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp HSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred HcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 3488889999999999999999999999999999999999999999999999999999999999999999988 777888
Q ss_pred HHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--c--HHHHHHHH
Q 003035 714 AYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--H--TRAHQGLA 787 (855)
Q Consensus 714 g~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~--~~a~~~lg 787 (855)
+..+...++.++|+.. |++++ ..+|+ .+++++|.++...|++++|+..|+++++.+ + ..++.++|
T Consensus 192 ~~~l~~~~~~~~a~~~----l~~al-----~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~ 262 (287)
T 3qou_A 192 QIELLXQAADTPEIQQ----LQQQV-----AENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQ 262 (287)
T ss_dssp HHHHHHHHTSCHHHHH----HHHHH-----HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHH
T ss_pred HHHHHhhcccCccHHH----HHHHH-----hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHH
Confidence 8889999999999999 99999 88888 999999999999999999999999999988 4 88999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHH
Q 003035 788 RVYYLKNELKAAYDEMTKLLEK 809 (855)
Q Consensus 788 ~~~~~~g~~~~A~~~~~kal~~ 809 (855)
.++...|+.++|...|++++..
T Consensus 263 ~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 263 EILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCCCcHHHHHHHHHHH
Confidence 9999999999999999998863
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.59 E-value=5.8e-15 Score=173.90 Aligned_cols=177 Identities=12% Similarity=0.064 Sum_probs=142.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHH
Q 003035 653 LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVI 731 (855)
Q Consensus 653 ~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~ 731 (855)
.|++++|++.|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++ .+++.+|.+|..+|++++|+..
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~-- 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVL-- 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHH--
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH--
Confidence 4788999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHc---CCHHHHHHHHH
Q 003035 732 QLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLK---NELKAAYDEMT 804 (855)
Q Consensus 732 ~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~---g~~~~A~~~~~ 804 (855)
|++++ ..+|+ .++.++|.+|...|++++|++.|+++++++ +..++.++|.++..+ |++++|++.++
T Consensus 80 --~~~al-----~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~ 152 (568)
T 2vsy_A 80 --LQQAS-----DAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVR 152 (568)
T ss_dssp --HHHHH-----HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred --HHHHH-----hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 99999 77777 899999999999999999999999999998 899999999999999 99999999999
Q ss_pred HHHHHccCCHHHHHHHhh---cCCHHHHHHHHHHHHh
Q 003035 805 KLLEKAQYSASAFEKRSE---YSDREMAKNDLNMATQ 838 (855)
Q Consensus 805 kal~~~p~~~~a~~~lg~---~g~~eeA~~~~~kAl~ 838 (855)
++++.+|++...+..++. ..+...|..++.+.+.
T Consensus 153 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 189 (568)
T 2vsy_A 153 AAVAQGVGAVEPFAFLSEDASAAEQLACARTRAQAIA 189 (568)
T ss_dssp HHHHHTCCCSCHHHHTTSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCcccChHHHhCCCCHHHHHHHHHHHHHhccC
Confidence 999999999888888884 2233344555555544
No 116
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.59 E-value=5e-14 Score=145.11 Aligned_cols=204 Identities=13% Similarity=0.048 Sum_probs=134.8
Q ss_pred hhHHHHHHHHHHhCCHHHHHHHHHHHHccCCC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchh
Q 003035 516 FPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS----VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGD 591 (855)
Q Consensus 516 ~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~----~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~ 591 (855)
..++.+|..++..|++++|+..|++++...|+ ..++..+|.+|..+|++++|+..|++++..+|++
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~---------- 74 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH---------- 74 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC----------
Confidence 45566677777777777777777777766553 2455666667777777777766666666555531
Q ss_pred HHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 003035 592 HLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS 671 (855)
Q Consensus 592 ~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p 671 (855)
+.-+.+++.+|.++...|..
T Consensus 75 ---------------------------------------------~~~~~a~~~~g~~~~~~~~~--------------- 94 (225)
T 2yhc_A 75 ---------------------------------------------PNIDYVMYMRGLTNMALDDS--------------- 94 (225)
T ss_dssp ---------------------------------------------TTHHHHHHHHHHHHHHHHC----------------
T ss_pred ---------------------------------------------CcHHHHHHHHHHHHHhhhhh---------------
Confidence 22334566666666554421
Q ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHHHH
Q 003035 672 SEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQA 750 (855)
Q Consensus 672 ~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~~a 750 (855)
....+..++.++.++|++++|+..|+++++.+|++ .+...+..+ .. +...+ ...
T Consensus 95 -~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l-----------~~----~~~~~---------~~~ 149 (225)
T 2yhc_A 95 -ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRL-----------VF----LKDRL---------AKY 149 (225)
T ss_dssp --------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHH-----------HH----HHHHH---------HHH
T ss_pred -hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHH-----------HH----HHHHH---------HHH
Confidence 11233445566667899999999999999999988 443221110 00 11111 134
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcc--c---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCH
Q 003035 751 LNNLGSIYVECGKLDQAENCYINALDIK--H---TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSA 814 (855)
Q Consensus 751 ~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~---~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~ 814 (855)
...+|.+|...|++++|+..|+++++.. + +.+++.+|.++..+|++++|++.++++....|++.
T Consensus 150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 150 EYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 5678999999999999999999999987 3 47899999999999999999999999998888753
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.59 E-value=1.3e-14 Score=157.15 Aligned_cols=161 Identities=15% Similarity=0.070 Sum_probs=121.9
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhccCCh-------HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH---H
Q 003035 680 EGWILYDTGHREEALSRAEKSISIERTF-------EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG---Q 749 (855)
Q Consensus 680 lg~~~~~~g~~~eAl~~~~kal~~~p~~-------~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~---~ 749 (855)
.|.++...|++++|+..|++++++.+.. .++.++|.+|..+|++++|+.. |+++++.....-++. .
T Consensus 42 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~----~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 42 AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQY----IEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHH----HHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHH----HHHHHHHHHHcCCHHHHHH
Confidence 3677888888888888888888876421 5777888888888888888888 888874332222232 6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcc--c------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCH------H
Q 003035 750 ALNNLGSIYVECGKLDQAENCYINALDIK--H------TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSA------S 815 (855)
Q Consensus 750 a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~------~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~------~ 815 (855)
++.++|.+|.. |++++|+.+|++|+++. . ..++.++|.++..+|++++|+..|++++++.|++. .
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 78888888887 88888888888888776 1 46788888888888888888888888888876542 3
Q ss_pred HHHHHhh----cCCHHHHHHHHHHHHhcCCCCccc
Q 003035 816 AFEKRSE----YSDREMAKNDLNMATQLDPLRTYP 846 (855)
Q Consensus 816 a~~~lg~----~g~~eeA~~~~~kAl~l~P~~~~~ 846 (855)
++..+|. .|++++|+..|++++ ++|.....
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~ 230 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGS 230 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCC
Confidence 5666666 588888888888888 88876544
No 118
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.57 E-value=1.9e-14 Score=169.45 Aligned_cols=156 Identities=13% Similarity=0.072 Sum_probs=131.4
Q ss_pred CCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCC
Q 003035 687 TGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGK 763 (855)
Q Consensus 687 ~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~ 763 (855)
.|++++|+..|+++++.+|++ .+++.+|.++...|++++|+.. |++++ ..+|+ .++.++|.+|...|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~----~~~al-----~~~p~~~~~~~~lg~~~~~~g~ 72 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMA----VQRGL-----ALHPGHPEAVARLGRVRWTQQR 72 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHH----HHHHH-----TTSTTCHHHHHHHHHHHHHTTC
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHH-----HhCCCCHHHHHHHHHHHHHCCC
Confidence 578999999999999999999 9999999999999999999999 99999 88888 999999999999999
Q ss_pred HHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh----c---CCHHHHHHHHH
Q 003035 764 LDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----Y---SDREMAKNDLN 834 (855)
Q Consensus 764 ~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~----~---g~~eeA~~~~~ 834 (855)
+++|+++|+++++++ ++.+++++|.++..+|++++|++.|+++++++|+++.++..+|. . |++++|+..|+
T Consensus 73 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~ 152 (568)
T 2vsy_A 73 HAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVR 152 (568)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 999999999999999 89999999999999999999999999999999999999999999 7 99999999999
Q ss_pred HHHhcCCCCcccchhhh
Q 003035 835 MATQLDPLRTYPYRYRA 851 (855)
Q Consensus 835 kAl~l~P~~~~~~~~~a 851 (855)
++++.+|....||...+
T Consensus 153 ~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 153 AAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHTCCCSCHHHHTT
T ss_pred HHHhcCCcccChHHHhC
Confidence 99999999988876543
No 119
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.57 E-value=3.6e-14 Score=145.02 Aligned_cols=182 Identities=13% Similarity=0.023 Sum_probs=144.3
Q ss_pred cchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC----CHHHHHHHHH
Q 003035 623 IGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTG----HREEALSRAE 698 (855)
Q Consensus 623 ~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g----~~~eAl~~~~ 698 (855)
..++..+.++.+. .++.+++.+|.++...+++++|+.+|+++.+. +++.+++.+|.+|.. + ++++|+..|+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 3456677777764 67888888888888888888888888888775 578888888888887 6 8888888888
Q ss_pred HHHhccCCh-HHHHHHHHHHHH----CCCCchhHHHHHHHHHHHhcCCCCCCCH----HHHHHHHHHHHHH----cCCHH
Q 003035 699 KSISIERTF-EAFFLKAYILAD----TNLDPESSTYVIQLLEEALRCPSDGLRK----GQALNNLGSIYVE----CGKLD 765 (855)
Q Consensus 699 kal~~~p~~-~a~~~lg~~~~~----~g~~~~A~~~~~~lle~al~~~~~~~~p----~~a~~~LG~~y~~----~g~~~ 765 (855)
++.+ +.+ .+++++|.+|.. .+++++|+.. |++++ ...+ ..++++||.+|.. .++++
T Consensus 78 ~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~----~~~A~-----~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~ 146 (212)
T 3rjv_A 78 KAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITL----LQDAA-----RDSESDAAVDAQMLLGLIYASGVHGPEDDV 146 (212)
T ss_dssp HHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHH----HHHHT-----SSTTSHHHHHHHHHHHHHHHHTSSSSCCHH
T ss_pred HHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHH----HHHHH-----HcCCCcchHHHHHHHHHHHHcCCCCCCCHH
Confidence 8854 456 888888888887 7888888888 88888 7776 3888888888888 77888
Q ss_pred HHHHHHHHHHhcc-cHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHHccCCHHHHHHHhh
Q 003035 766 QAENCYINALDIK-HTRAHQGLARVYYLK-N-----ELKAAYDEMTKLLEKAQYSASAFEKRSE 822 (855)
Q Consensus 766 ~A~~~~~kAL~~~-~~~a~~~lg~~~~~~-g-----~~~~A~~~~~kal~~~p~~~~a~~~lg~ 822 (855)
+|+.+|+++++.. ++.+++++|.+|... | ++++|+.+|+++++.. ++.+...++.
T Consensus 147 ~A~~~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~A~~~l~~ 208 (212)
T 3rjv_A 147 KASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTGCEEFDR 208 (212)
T ss_dssp HHHHHHHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHH
Confidence 8888888888884 777888888888764 3 7888888888888774 4555555543
No 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.56 E-value=8.6e-15 Score=136.78 Aligned_cols=118 Identities=14% Similarity=0.103 Sum_probs=111.0
Q ss_pred HHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHH
Q 003035 632 MLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAF 710 (855)
Q Consensus 632 ~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~ 710 (855)
+...+|+.+..+..+|..+++.|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++ .+|
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 3457899999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHH
Q 003035 711 FLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIY 758 (855)
Q Consensus 711 ~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y 758 (855)
+.+|.++..+|++++|+.. |++++ .++|+ +++.+|+.++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~----~~~al-----~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRA----YEDAL-----QVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHH----HHHHH-----HHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHH----HHHHH-----HHCcCCHHHHHHHHHhc
Confidence 9999999999999999999 99999 88888 8888888763
No 121
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.56 E-value=1.1e-14 Score=136.06 Aligned_cols=114 Identities=11% Similarity=0.031 Sum_probs=67.9
Q ss_pred HhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCC
Q 003035 667 RNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGL 745 (855)
Q Consensus 667 l~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~ 745 (855)
..++|+.++.+..+|..++..|++++|+..|+++++++|++ .+++++|.+|..+
T Consensus 6 a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~------------------------- 60 (126)
T 4gco_A 6 AYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKL------------------------- 60 (126)
T ss_dssp -CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-------------------------
T ss_pred HHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhh-------------------------
Confidence 34566666666666666666666666666666666666655 5555555555544
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHh
Q 003035 746 RKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS 821 (855)
Q Consensus 746 ~p~~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg 821 (855)
|++++|++.|+++++++ ++.+++++|.++..+|++++|++.|+++++++|+++.++..++
T Consensus 61 ----------------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~ 122 (126)
T 4gco_A 61 ----------------MEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVR 122 (126)
T ss_dssp ----------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ----------------ccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 45555555555555555 5556666666666666666666666666666666666665554
No 122
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.55 E-value=3e-13 Score=138.13 Aligned_cols=171 Identities=14% Similarity=0.013 Sum_probs=155.8
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCC----CCchhHHHHH
Q 003035 657 KAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTN----LDPESSTYVI 731 (855)
Q Consensus 657 ~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g----~~~~A~~~~~ 731 (855)
.+|++.|+++.+. .++.+++.+|.++...+++++|+..|+++++. .+ .+++++|.+|.. + ++++|+..
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~-- 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQL-- 75 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHH--
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHH--
Confidence 4578899999886 78999999999999999999999999999875 45 999999999998 6 88999999
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhccc----HHHHHHHHHHHHH----cCCHHHH
Q 003035 732 QLLEEALRCPSDGLRKGQALNNLGSIYVE----CGKLDQAENCYINALDIKH----TRAHQGLARVYYL----KNELKAA 799 (855)
Q Consensus 732 ~lle~al~~~~~~~~p~~a~~~LG~~y~~----~g~~~~A~~~~~kAL~~~~----~~a~~~lg~~~~~----~g~~~~A 799 (855)
|+++. +.....++++||.+|.. .+++++|+++|+++++..+ +.+++++|.+|.. .+++++|
T Consensus 76 --~~~A~-----~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 148 (212)
T 3rjv_A 76 --AEKAV-----EAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKA 148 (212)
T ss_dssp --HHHHH-----HTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHH
T ss_pred --HHHHH-----HCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 99999 66777899999999998 9999999999999999985 9999999999999 8899999
Q ss_pred HHHHHHHHHHccCCHHHHHHHhh-----cC-----CHHHHHHHHHHHHhcCCC
Q 003035 800 YDEMTKLLEKAQYSASAFEKRSE-----YS-----DREMAKNDLNMATQLDPL 842 (855)
Q Consensus 800 ~~~~~kal~~~p~~~~a~~~lg~-----~g-----~~eeA~~~~~kAl~l~P~ 842 (855)
+.+|+++++. |.++.++++||. .| ++++|+.+|++|.+....
T Consensus 149 ~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 149 SEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 9999999998 778889999999 35 899999999999998543
No 123
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.55 E-value=3.9e-14 Score=151.91 Aligned_cols=160 Identities=10% Similarity=-0.044 Sum_probs=150.7
Q ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH
Q 003035 670 SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG 748 (855)
Q Consensus 670 ~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~ 748 (855)
-|++.+.++.+|..+...|++++|+..|+++++.+|++ .+++.+|.++...|++++|+.. +++++ ..+|+
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~----l~~~~-----~~~p~ 183 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAV----LXTIP-----LQDQD 183 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHH----HTTSC-----GGGCS
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHH----HHhCc-----hhhcc
Confidence 48999999999999999999999999999999999999 9999999999999999999999 99998 66666
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCC--HHHHHHHhh
Q 003035 749 --QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS--ASAFEKRSE 822 (855)
Q Consensus 749 --~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~--~~a~~~lg~ 822 (855)
..+...+..+...++.++|+..|+++++.+ ++.+++++|.++...|++++|+..|+++++.+|++ +.++..+|.
T Consensus 184 ~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~ 263 (287)
T 3qou_A 184 TRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQE 263 (287)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHH
Confidence 666677777889999999999999999999 89999999999999999999999999999999999 889999999
Q ss_pred ----cCCHHHHHHHHHHHHh
Q 003035 823 ----YSDREMAKNDLNMATQ 838 (855)
Q Consensus 823 ----~g~~eeA~~~~~kAl~ 838 (855)
.|+.++|...|++++.
T Consensus 264 ~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 264 ILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHcCCCCcHHHHHHHHHH
Confidence 8999999999999985
No 124
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.55 E-value=2.3e-15 Score=167.89 Aligned_cols=72 Identities=17% Similarity=0.099 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhcchhhhhhHHHHHHHhCChHHHHHHHHhH
Q 003035 398 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSI 477 (855)
Q Consensus 398 ~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~ 477 (855)
.+.|.+.+++. + . ..+|..||..+++.|++++|++.|.++ ++..++..++..+...|++++|+..+..+
T Consensus 19 ld~A~~fae~~---~-~----~~vWs~La~A~l~~g~~~eAIdsfika---~D~~~y~~V~~~ae~~g~~EeAi~yl~~a 87 (449)
T 1b89_A 19 LDRAYEFAERC---N-E----PAVWSQLAKAQLQKGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQMA 87 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhC---C-C----hHHHHHHHHHHHHcCCHHHHHHHHHcC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 55555555554 1 1 136778888888888888888888664 33445666666666777777777666555
Q ss_pred HHc
Q 003035 478 ISE 480 (855)
Q Consensus 478 i~~ 480 (855)
.+.
T Consensus 88 rk~ 90 (449)
T 1b89_A 88 RKK 90 (449)
T ss_dssp ---
T ss_pred HHh
Confidence 543
No 125
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.54 E-value=3.8e-14 Score=153.44 Aligned_cols=161 Identities=11% Similarity=0.022 Sum_probs=102.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC-----h--HHHHHHH
Q 003035 648 LLLLRLNCQKAAMRCLRLARNHSSS------EHERLVYEGWILYDTGHREEALSRAEKSISIERT-----F--EAFFLKA 714 (855)
Q Consensus 648 ~~l~~~g~~~~A~~~l~~al~~~p~------~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~-----~--~a~~~lg 714 (855)
.++...|++++|+..|++++++.+. ...++..+|.++..+|++++|+..|++++++.+. . .++.++|
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445556666666666666555432 1335556666666666666666666666665432 1 4566666
Q ss_pred HHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--c------HHHH
Q 003035 715 YILADTNLDPESSTYVIQLLEEALRCPSDGLRKG---QALNNLGSIYVECGKLDQAENCYINALDIK--H------TRAH 783 (855)
Q Consensus 715 ~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~---~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~------~~a~ 783 (855)
.+|.. |++++|+.. |+++++.....-++. .+++++|.+|..+|++++|+.+|++++++. + ..++
T Consensus 124 ~~~~~-g~~~~A~~~----~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 198 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHL----YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKC 198 (307)
T ss_dssp HHHTT-TCHHHHHHH----HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHc-CCHHHHHHH----HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHH
Confidence 66666 677776666 666662211111111 577778888888888888888888888764 1 3467
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccCCH
Q 003035 784 QGLARVYYLKNELKAAYDEMTKLLEKAQYSA 814 (855)
Q Consensus 784 ~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~ 814 (855)
.++|.++..+|++++|+..|++++ ++|++.
T Consensus 199 ~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 199 IAQVLVQLHRADYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence 777778888888888888888888 777654
No 126
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.54 E-value=1.6e-13 Score=149.63 Aligned_cols=218 Identities=10% Similarity=0.017 Sum_probs=187.9
Q ss_pred hHHHHHHHHHcCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHC-C-CHHHHHHHHHHHH
Q 003035 625 SLAVINQMLINDPGKSFLRFRQSLLLLRLN-CQKAAMRCLRLARNHSSSEHERLVYEGWILYDT-G-HREEALSRAEKSI 701 (855)
Q Consensus 625 al~~~~~~l~~~p~~~~~~~~~a~~l~~~g-~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~-g-~~~eAl~~~~kal 701 (855)
++....+++..+|++..++..++.++...| .++++++.+++++..+|++..+|+.+++++... + ++++++..+++++
T Consensus 73 AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L 152 (349)
T 3q7a_A 73 ALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSL 152 (349)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 466677888888888888888999999999 599999999999999999999999999999998 8 9999999999999
Q ss_pred hccCCh-HHHHHHHHHHHHCCCCc--------hhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCC-------
Q 003035 702 SIERTF-EAFFLKAYILADTNLDP--------ESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGK------- 763 (855)
Q Consensus 702 ~~~p~~-~a~~~lg~~~~~~g~~~--------~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~------- 763 (855)
+.+|.+ .+|..++.++...|.++ ++++. +++++ ..+|. .+|+++|.++...++
T Consensus 153 ~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~----~~k~I-----~~dp~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 153 LPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDW----CNEML-----RVDGRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH----HHHHH-----HHCTTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHH----HHHHH-----HhCCCCHHHHHHHHHHHHhccccccchHH
Confidence 999999 99999999999999888 88888 99999 77777 999999999999987
Q ss_pred HHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHHc------cCCHH
Q 003035 764 LDQAENCYINALDIK--HTRAHQGLARVYYLKNEL--------------------KAAYDEMTKLLEKA------QYSAS 815 (855)
Q Consensus 764 ~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~--------------------~~A~~~~~kal~~~------p~~~~ 815 (855)
++++++++++++.++ |..+++.+..++...|+- .+-.+...+.+... +..+.
T Consensus 224 ~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 303 (349)
T 3q7a_A 224 LQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPL 303 (349)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHH
Confidence 799999999999999 999999999999887753 22222222222222 46788
Q ss_pred HHHHHhh----cCCHHHHHHHHHHHH-hcCCCCcccchhhh
Q 003035 816 AFEKRSE----YSDREMAKNDLNMAT-QLDPLRTYPYRYRA 851 (855)
Q Consensus 816 a~~~lg~----~g~~eeA~~~~~kAl-~l~P~~~~~~~~~a 851 (855)
++..+++ .|+.++|.+.++... +.||-+..-|+||+
T Consensus 304 al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 304 ALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 8999988 899999999999986 78999999999986
No 127
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.54 E-value=1.4e-12 Score=141.54 Aligned_cols=189 Identities=10% Similarity=0.032 Sum_probs=160.9
Q ss_pred hHHHHHHHHHcCCCChHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
Q 003035 625 SLAVINQMLINDPGKSFLRFRQSLLLLRLNC--QKAAMRCLRLARNHSSSEHERLVYEGWILYDTGH-REEALSRAEKSI 701 (855)
Q Consensus 625 al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~--~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~-~~eAl~~~~kal 701 (855)
.+..+..++..+|.+..++..++.++...|+ +++++..+.++++.+|.+..+|.+.+++....|. +++++..+++++
T Consensus 93 EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I 172 (331)
T 3dss_A 93 ELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLI 172 (331)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 3556777888899999999999999999884 8999999999999999999999999999999999 699999999999
Q ss_pred hccCCh-HHHHHHHHHHHHC--------------CCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHc---
Q 003035 702 SIERTF-EAFFLKAYILADT--------------NLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVEC--- 761 (855)
Q Consensus 702 ~~~p~~-~a~~~lg~~~~~~--------------g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~--- 761 (855)
+.+|++ .+|+.++.++... +.++++++. +.+++ ..+|+ .+|+.+..++...
T Consensus 173 ~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~----~~~ai-----~~~P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 173 TRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELEL----VQNAF-----FTDPNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHH----HHHHH-----HHSTTCHHHHHHHHHHHHSSSCG
T ss_pred HHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHH----HHHHH-----HhCCCCHHHHHHHHHHHHhccCc
Confidence 999999 9999999998887 335566667 99999 88888 8998777776665
Q ss_pred --------CCHHHHHHHHHHHHhcc--cHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHccCCHHHHHHHhh
Q 003035 762 --------GKLDQAENCYINALDIK--HTRAHQGLARVYY---LKNELKAAYDEMTKLLEKAQYSASAFEKRSE 822 (855)
Q Consensus 762 --------g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~---~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~ 822 (855)
+.++++++++++++++. +.-++..++.+.. ..|..++...++.++++++|-....|..++.
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 46899999999999999 5444444444332 2477889999999999999998888887765
No 128
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.53 E-value=1.2e-14 Score=143.72 Aligned_cols=160 Identities=11% Similarity=-0.003 Sum_probs=136.8
Q ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH
Q 003035 670 SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG 748 (855)
Q Consensus 670 ~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~ 748 (855)
+|...+.++.+|..+...|++++|+..|+++++.+|++ .+++.+|.++...|++++|+.. +++++ ...|+
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~----~~~a~-----~~~p~ 72 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQEL----LATIP-----LEYQD 72 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHH----HTTCC-----GGGCC
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHH----HHHhh-----hccCC
Confidence 45556678899999999999999999999999999999 9999999999999999999999 99998 44442
Q ss_pred -HHHHHHHHHH-HHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCC--HHHHHHHhh
Q 003035 749 -QALNNLGSIY-VECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS--ASAFEKRSE 822 (855)
Q Consensus 749 -~a~~~LG~~y-~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~--~~a~~~lg~ 822 (855)
..+..+|.+. ...++..+|+..|+++++++ ++.+++++|.++...|++++|+..|+++++.+|++ +.++..+|.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~ 152 (176)
T 2r5s_A 73 NSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMD 152 (176)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHH
Confidence 3444445443 23344556899999999998 89999999999999999999999999999999976 569999988
Q ss_pred ----cCCHHHHHHHHHHHHh
Q 003035 823 ----YSDREMAKNDLNMATQ 838 (855)
Q Consensus 823 ----~g~~eeA~~~~~kAl~ 838 (855)
.|+.++|+..|++++.
T Consensus 153 ~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 153 ILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHhCCCCcHHHHHHHHHH
Confidence 8999999999999985
No 129
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.52 E-value=1.5e-11 Score=146.69 Aligned_cols=427 Identities=9% Similarity=-0.039 Sum_probs=286.1
Q ss_pred hhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhcch--hhhhhHHHHHHHhCC---hHHHHH
Q 003035 398 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHI--YSLAGLARAKYKVGQ---QYSAYK 472 (855)
Q Consensus 398 ~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~~~--~a~~~la~~~~~~g~---~~~A~~ 472 (855)
.+..+..|++.+..+|.+. .+|..+.......++++.|...|++++..-|. ..+..-+......|+ ...+..
T Consensus 48 ~~d~i~~lE~~l~~np~d~---~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPTDI---FLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CSCHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCCH---HHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3456777888888777663 46777877778888999999999999887553 334555556667777 888999
Q ss_pred HHHhHHHcCC--CchHHHHHHhh----ccC----cchHH----HHHHHHHHh----CCCCchhHHHHHHHH---------
Q 003035 473 LINSIISEHK--PTGWMYQERSL----YNL----GREKI----VDLNYASEL----DPTLSFPYKYRAVAK--------- 525 (855)
Q Consensus 473 ~l~~~i~~~p--~~~~~y~~~~~----~~~----~~~A~----~~l~~a~~l----dP~~~~a~~~~a~~~--------- 525 (855)
.+++++...| ++..++..-.. .+. .+++. +.|++|++. ||.....|..-....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 9999998884 44433322111 111 12233 567777763 666655543322211
Q ss_pred HHhCCHHHHHHHHHHHHccCCC-HhHHHHHH--------------HHHHHcCCHHHHHHHHHHHHhcC-------Cchhh
Q 003035 526 MEEGQIRAAISEIDRIIVFKLS-VDCLELRA--------------WLFIAADDYESALRDTLALLALE-------SNYMM 583 (855)
Q Consensus 526 ~~~~~~~~A~~~~~k~l~~~p~-~~~l~lra--------------~~y~~~gd~~~A~~~~~~aL~~~-------P~~~~ 583 (855)
-++++.+.+...|+++|..... .+.+...- .+-....+|+.|...++..-... |....
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~ 284 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLN 284 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSST
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccc
Confidence 2355688899999999975322 22221110 01111223344443333321111 10000
Q ss_pred --hhcccchhHHHHHHHHHhhccChhhhHHHHhhhccc----cccc---c-hHHHHHHHHHcCCCChHHHHHHHHHHHHc
Q 003035 584 --FHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSS----VDDI---G-SLAVINQMLINDPGKSFLRFRQSLLLLRL 653 (855)
Q Consensus 584 --~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~----~~d~---~-al~~~~~~l~~~p~~~~~~~~~a~~l~~~ 653 (855)
....+.... . ....+...|....+.... .++. . ...++.+++...|..+.+|+..+..+...
T Consensus 285 ~~~~~~~p~~~--~------~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~ 356 (679)
T 4e6h_A 285 QATESNLPKPN--E------YDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEK 356 (679)
T ss_dssp TCCTTTSCCTT--C------CCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cchhccCCCCc--h------hHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 000000000 0 000011223322111111 1111 0 12467899999999999999999999999
Q ss_pred CCHHHHH-HHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc-----------CC-----------h-HH
Q 003035 654 NCQKAAM-RCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE-----------RT-----------F-EA 709 (855)
Q Consensus 654 g~~~~A~-~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~-----------p~-----------~-~a 709 (855)
|+.++|. ..|++|+...|.+...+...+......|++++|...|++++..- |. + .+
T Consensus 357 ~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~v 436 (679)
T 4e6h_A 357 NTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYV 436 (679)
T ss_dssp SCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHH
Confidence 9999997 99999999999999999999999999999999999999999852 53 3 57
Q ss_pred HHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH---HHHHHHHHHHHHcC-CHHHHHHHHHHHHhcc--cHHHH
Q 003035 710 FFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG---QALNNLGSIYVECG-KLDQAENCYINALDIK--HTRAH 783 (855)
Q Consensus 710 ~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~---~a~~~LG~~y~~~g-~~~~A~~~~~kAL~~~--~~~a~ 783 (855)
|...+......|+.+.|.+. |++|+ ...|. .+|...+.+....| +++.|.+.|+++++.. ++..+
T Consensus 437 Wi~y~~~erR~~~l~~AR~v----f~~A~-----~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w 507 (679)
T 4e6h_A 437 YCVYMNTMKRIQGLAASRKI----FGKCR-----RLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYI 507 (679)
T ss_dssp HHHHHHHHHHHHCHHHHHHH----HHHHH-----HTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHH----HHHHH-----HhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHH
Confidence 88888888888888888888 99999 43222 67777777777765 4999999999999987 77788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccC---CHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCCc
Q 003035 784 QGLARVYYLKNELKAAYDEMTKLLEKAQY---SASAFEKRSE----YSDREMAKNDLNMATQLDPLRT 844 (855)
Q Consensus 784 ~~lg~~~~~~g~~~~A~~~~~kal~~~p~---~~~a~~~lg~----~g~~eeA~~~~~kAl~l~P~~~ 844 (855)
..++......|+.+.|...|+++++..|+ ....|..... .|+.+.+.+.++++.+..|++.
T Consensus 508 ~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 508 NKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 88898888999999999999999999884 4455555555 8999999999999999999864
No 130
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.52 E-value=2.3e-14 Score=153.33 Aligned_cols=196 Identities=12% Similarity=0.048 Sum_probs=157.4
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHH
Q 003035 637 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAY 715 (855)
Q Consensus 637 p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~ 715 (855)
|.++..++.+|..+...|++++|+..|+++++.+|+++.+++++|.++..+|++++|+..|+++++++|++ .+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHH
Q 003035 716 ILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQ--ALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYY 791 (855)
Q Consensus 716 ~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~~--a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~ 791 (855)
+|...|++++|+.. |++++ .+.|+. .+........ +..++........... +..+...++.++
T Consensus 81 ~~~~~g~~~~A~~~----~~~al-----~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~- 147 (281)
T 2c2l_A 81 CQLEMESYDEAIAN----LQRAY-----SLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI- 147 (281)
T ss_dssp HHHHTTCHHHHHHH----HHHHH-----HHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH-
T ss_pred HHHHcCCHHHHHHH----HHHHH-----HhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-
Confidence 99999999999999 99999 666651 1111111111 1222222222222222 667777777765
Q ss_pred HcCCHHHHHHHHHHHHHHccCCHHHHHHHhh-----cCCHHHHHHHHHHHHhcCCCCccc
Q 003035 792 LKNELKAAYDEMTKLLEKAQYSASAFEKRSE-----YSDREMAKNDLNMATQLDPLRTYP 846 (855)
Q Consensus 792 ~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~-----~g~~eeA~~~~~kAl~l~P~~~~~ 846 (855)
.|++++|++.++++++.+|++......++. .+.+++|...|+++.+..+....|
T Consensus 148 -~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~~~~~~ 206 (281)
T 2c2l_A 148 -AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKKRDIP 206 (281)
T ss_dssp -HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTSCCCCC
T ss_pred -HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Confidence 689999999999999999998887777766 477889999999998865544444
No 131
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.50 E-value=6.3e-12 Score=137.07 Aligned_cols=217 Identities=13% Similarity=0.075 Sum_probs=160.9
Q ss_pred chHHHHHHHHHHhCCCCchhHHHHHHHHHHhC-CHHHHHHHHHHHHccCC-CHhHHHHHHHHHHHc-C-CHHHHHHHHHH
Q 003035 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEG-QIRAAISEIDRIIVFKL-SVDCLELRAWLFIAA-D-DYESALRDTLA 573 (855)
Q Consensus 498 ~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~-~~~~A~~~~~k~l~~~p-~~~~l~lra~~y~~~-g-d~~~A~~~~~~ 573 (855)
++|++.++++++++|++..+|.+|+.++...+ .+++++..++++|..+| +..++..|+++...+ + +++++++.+.+
T Consensus 71 e~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k 150 (349)
T 3q7a_A 71 ERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHG 150 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 46888899999999999999999999999888 59999999999999999 578889999988887 7 77777777777
Q ss_pred HHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHc
Q 003035 574 LLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRL 653 (855)
Q Consensus 574 aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~ 653 (855)
++..+|++. .++..++.++...
T Consensus 151 ~L~~dpkNy----------------------------------------------------------~AW~~R~wvl~~l 172 (349)
T 3q7a_A 151 SLLPDPKNY----------------------------------------------------------HTWAYLHWLYSHF 172 (349)
T ss_dssp HTSSCTTCH----------------------------------------------------------HHHHHHHHHHHHH
T ss_pred HHHhCCCCH----------------------------------------------------------HHHHHHHHHHHHh
Confidence 777776653 2333333333333
Q ss_pred CCH--------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHhccCCh-HHHHHHHHHH
Q 003035 654 NCQ--------KAAMRCLRLARNHSSSEHERLVYEGWILYDTGH-------REEALSRAEKSISIERTF-EAFFLKAYIL 717 (855)
Q Consensus 654 g~~--------~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~-------~~eAl~~~~kal~~~p~~-~a~~~lg~~~ 717 (855)
|.+ .+++++++++++.+|.+..+|.+++.++...++ +++++..+++++..+|++ .+|+.+..++
T Consensus 173 ~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll 252 (349)
T 3q7a_A 173 STLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFL 252 (349)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 333 489999999999999999999999999999987 799999999999999999 9999988888
Q ss_pred HHCCCCch----------------hHHHHHHHHHHHhcCCCCC----CCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003035 718 ADTNLDPE----------------SSTYVIQLLEEALRCPSDG----LRKG--QALNNLGSIYVECGKLDQAENCYINAL 775 (855)
Q Consensus 718 ~~~g~~~~----------------A~~~~~~lle~al~~~~~~----~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL 775 (855)
...|+... ....+ .+.+++..... ..+. .++..|+.+|.+.|+.++|.++|+...
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 253 KHFSLPLVPILPAILPYTASKLNPDIETV---EAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp HHTTCCSGGGHHHHGGGTC-----------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhcCCCcccccccccccccccccccchhH---HHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 88877511 11110 22222221111 1111 667777777777777777777777665
No 132
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.50 E-value=3.1e-14 Score=150.54 Aligned_cols=189 Identities=11% Similarity=-0.037 Sum_probs=167.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH-------HHHHHHCCCHHHHHHHHHHHHhccCCh-HHHH----
Q 003035 644 FRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYE-------GWILYDTGHREEALSRAEKSISIERTF-EAFF---- 711 (855)
Q Consensus 644 ~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~l-------g~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~---- 711 (855)
|..|.-+ ..+++..|.+.|.++++++|+.+++|..+ +.++...+++.+++..+++++.+.|.. .+++
T Consensus 11 ~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g 89 (282)
T 4f3v_A 11 FESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGG 89 (282)
T ss_dssp HHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCT
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCC
Confidence 4445444 68999999999999999999999999999 899999999999999999999988876 4443
Q ss_pred -----------------HHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHH
Q 003035 712 -----------------LKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYIN 773 (855)
Q Consensus 712 -----------------~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~-~a~~~LG~~y~~~g~~~~A~~~~~k 773 (855)
.+|.++...|++++|.+. |+..+ ...|+ .+.+.+|.++.+.|++++|+..|++
T Consensus 90 ~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~----l~~~~-----~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~ 160 (282)
T 4f3v_A 90 LYGDITYPVTSPLAITMGFAACEAAQGNYADAMEA----LEAAP-----VAGSEHLVAWMKAVVYGAAERWTDVIDQVKS 160 (282)
T ss_dssp TTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHH----HTSSC-----CTTCHHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred cccccccccCCHhHHHHHHHHHHHHCCCHHHHHHH----HHHHH-----hcCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 478899999999999999 99888 67777 5889999999999999999999998
Q ss_pred HHhcc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--cC-CHHHHHHHhh----cCCHHHHHHHHHHHHhcCCC
Q 003035 774 ALDIK----HTRAHQGLARVYYLKNELKAAYDEMTKLLEKA--QY-SASAFEKRSE----YSDREMAKNDLNMATQLDPL 842 (855)
Q Consensus 774 AL~~~----~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~--p~-~~~a~~~lg~----~g~~eeA~~~~~kAl~l~P~ 842 (855)
+++.. ...+++++|.++..+|++++|+.+|++++.-. |. .+++++.+|. +|+.++|+..|++++..+|+
T Consensus 161 a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 161 AGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred hhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 88765 14589999999999999999999999998543 54 6678899998 99999999999999999998
No 133
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.48 E-value=4.5e-14 Score=136.46 Aligned_cols=108 Identities=13% Similarity=0.064 Sum_probs=58.4
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcC
Q 003035 662 CLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRC 740 (855)
Q Consensus 662 ~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~ 740 (855)
.++++++++|+++++++.+|.+++.+|++++|+..|+++++++|++ .+|+++|.++...|++++|+.. |++++
T Consensus 24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~----~~~al-- 97 (151)
T 3gyz_A 24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADL----YAVAF-- 97 (151)
T ss_dssp CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH----HHHHH--
T ss_pred CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHH----HHHHH--
Confidence 3444455555555555555555555555555555555555555555 5555555555555555555555 55555
Q ss_pred CCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 003035 741 PSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK 778 (855)
Q Consensus 741 ~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~ 778 (855)
.++|+ .+|+++|.+|..+|++++|+.+|++++++.
T Consensus 98 ---~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 98 ---ALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp ---HHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ---hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44444 555555555555555555555555555554
No 134
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.48 E-value=7.2e-14 Score=135.02 Aligned_cols=111 Identities=5% Similarity=-0.085 Sum_probs=106.0
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-
Q 003035 629 INQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF- 707 (855)
Q Consensus 629 ~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~- 707 (855)
+.++++.+|++...++.+|..+.+.|++++|+..|+++++++|+++.+|+.+|.++..+|++++|+..|+++++++|++
T Consensus 25 l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~ 104 (151)
T 3gyz_A 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY 104 (151)
T ss_dssp TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc
Confidence 3567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH
Q 003035 708 EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG 748 (855)
Q Consensus 708 ~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~ 748 (855)
.+++++|.+|..+|++++|+.. |++++ .+.|+
T Consensus 105 ~~~~~lg~~~~~lg~~~eA~~~----~~~al-----~l~~~ 136 (151)
T 3gyz_A 105 TPVFHTGQCQLRLKAPLKAKEC----FELVI-----QHSND 136 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHH----HHHHH-----HHCCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHH----HHHHH-----HhCCC
Confidence 9999999999999999999999 99999 66555
No 135
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=99.48 E-value=8.2e-14 Score=135.41 Aligned_cols=116 Identities=15% Similarity=0.134 Sum_probs=96.8
Q ss_pred EEEEE-cCeEEEeeehhhhcCCHHHHHhhcC-CCc-cCCCCeeEecCCCCCHHHHHHHHHHhccCC--------------
Q 003035 220 VTFCV-RDKEISFVRNKIASLSSPFKAMLYG-GFV-ESKRKTIDFSHDGVSVEGLRAVEVYTRTSR-------------- 282 (855)
Q Consensus 220 V~f~v-~~~~~~aHr~vLaa~S~~F~~mf~~-~~~-E~~~~~I~l~~~~is~~~~~~ll~y~YTg~-------------- 282 (855)
|+++. +|+.|.+||.+ |+.|+||++||.+ ++. |+.+..|.| ++|+..+|+.|++|+|++.
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~S~~i~~m~~~~~~~~e~~~~~Ipl--~~V~~~iL~kViey~~~h~~~~~~~~~~~~~~~ 79 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDDEGDDDPVPL--PNVNAAILKKVIQWCTHHKDDPPPPEDDENKEK 79 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHTCHHHHHHTTSSCSS------CEEC--TTSCHHHHHHHHHHHHHTTTCCC----------
T ss_pred EEEEcCCCCEEEeCHHH-HHHhHHHHHHHHhcCCcccccCCCcCC--CCccHHHHHHHHHHHHHcCcCCCCccccccccc
Confidence 77875 89999999999 8999999999998 888 788889999 9999999999999999998
Q ss_pred ------------CCCCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhcC--ChhhHHHHHHHHHHhccHHH
Q 003035 283 ------------VDLFCPGIVLELLSFANRFCCEEMKSACDAHLASLVG--DIEDALILIDYGLEERATLL 339 (855)
Q Consensus 283 ------------l~~~~~~~~~~ll~~A~~~~~~~Lk~~C~~~l~~~l~--~~~n~~~~~~~A~~~~~~~L 339 (855)
+. ++.+++.+|+.+|+++++..|.+.|++++...+. +++.+..++.+...+...+.
T Consensus 80 ~~~~i~~wD~~F~~-id~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~gkt~eeir~~f~I~~d~t~eEe 149 (159)
T 2ast_A 80 RTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEE 149 (159)
T ss_dssp -CCCCCHHHHHHTC-SCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSCCHHHHHHHTTCCCCSCTTHH
T ss_pred chhhhhHHHHHHHc-CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHH
Confidence 66 8999999999999999999999999999999887 46666666665554444433
No 136
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.47 E-value=9.1e-13 Score=141.29 Aligned_cols=170 Identities=11% Similarity=-0.058 Sum_probs=143.1
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh---
Q 003035 637 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHE------RLVYEGWILYDTGHREEALSRAEKSISIERTF--- 707 (855)
Q Consensus 637 p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~------~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~--- 707 (855)
|.....+...+..+...|++++|++.++++++..|.... .++.+|.++...|++++|+..|+++++..+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 344455667788899999999999999999998886543 35678999999999999999999999864332
Q ss_pred ----HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCC-CCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-
Q 003035 708 ----EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSD-GLRKG---QALNNLGSIYVECGKLDQAENCYINALDIK- 778 (855)
Q Consensus 708 ----~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~-~~~p~---~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~- 778 (855)
.+++.+|.+|...|++++|+.. |+++++.... ...+. .+++++|.+|..+|++++|+++|++++++.
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~----~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDL----FEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHH----HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHH----HHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999 9998832111 11222 699999999999999999999999999886
Q ss_pred c-------HHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHc
Q 003035 779 H-------TRAHQGLARVYYLKNELKAA-YDEMTKLLEKA 810 (855)
Q Consensus 779 ~-------~~a~~~lg~~~~~~g~~~~A-~~~~~kal~~~ 810 (855)
+ ..+++++|.++..+|++++| ..++++++.+.
T Consensus 228 ~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 228 RINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 3 78999999999999999999 78899999764
No 137
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.46 E-value=4.3e-14 Score=157.66 Aligned_cols=295 Identities=14% Similarity=0.073 Sum_probs=143.2
Q ss_pred HHHHHHHhhcccccchhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHhc-chhhhhhHHHHH
Q 003035 383 LYYFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAG-HIYSLAGLARAK 461 (855)
Q Consensus 383 l~~~La~~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~~-~~~a~~~la~~~ 461 (855)
++..||..+...++ .++|+..|.++ ++ ..++..+|..+...|+|++|+.+++.+.+.. ++.....++.+|
T Consensus 34 vWs~La~A~l~~g~-~~eAIdsfika----~D----~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y 104 (449)
T 1b89_A 34 VWSQLAKAQLQKGM-VKEAIDSYIKA----DD----PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFAL 104 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHcC----CC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHH
Confidence 67788998888888 88898888663 22 2367788888888999999999888887642 233456677778
Q ss_pred HHhCChHHHHHHHHhHHHcCCCchHHHHHHhhccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHH
Q 003035 462 YKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRI 541 (855)
Q Consensus 462 ~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~~~~~~~A~~~l~~a~~ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~ 541 (855)
.+.|+..++.+.++ .|+ ..+|..+|..+...|++++|+..|+++
T Consensus 105 ~Klg~l~e~e~f~~-----------------------------------~pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 105 AKTNRLAELEEFIN-----------------------------------GPN-NAHIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp ----CHHHHTTTTT-----------------------------------CC-----------------CTTTHHHHHHHT
T ss_pred HHhCCHHHHHHHHc-----------------------------------CCc-HHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 88887765543221 122 236777888888899999999888877
Q ss_pred HccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhccccc
Q 003035 542 IVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVD 621 (855)
Q Consensus 542 l~~~p~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~ 621 (855)
..+..+|.++..+|+|++|++.++++. +|
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~------------------------------------------ 177 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKAN--ST------------------------------------------ 177 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CH------------------------------------------
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHcC--Cc------------------------------------------
Confidence 245566888889999999888888761 11
Q ss_pred ccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 003035 622 DIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSI 701 (855)
Q Consensus 622 d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal 701 (855)
..|-.........|+++.|..+... +...|++ ...+...|.+.|++++|+..+++++
T Consensus 178 -------------------~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 178 -------------------RTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE---LEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp -------------------HHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred -------------------hhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 1222234456778888888776665 3355544 3357888999999999999999999
Q ss_pred hccCCh-HHHHHHHHHHHHC--CCCchhHHHHHHHHHHHhcCCCCCCCH-----H--HHHHHHHHHHHHcCCHHHHHHHH
Q 003035 702 SIERTF-EAFFLKAYILADT--NLDPESSTYVIQLLEEALRCPSDGLRK-----G--QALNNLGSIYVECGKLDQAENCY 771 (855)
Q Consensus 702 ~~~p~~-~a~~~lg~~~~~~--g~~~~A~~~~~~lle~al~~~~~~~~p-----~--~a~~~LG~~y~~~g~~~~A~~~~ 771 (855)
.+++.. ..+..+|.+|.+- ++..+.++. |...+ ++.| . ..|..+..+|.+.++++.|+...
T Consensus 235 ~le~ah~~~ftel~il~~ky~p~k~~ehl~~----~~~~i-----ni~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 235 GLERAHMGMFTELAILYSKFKPQKMREHLEL----FWSRV-----NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp TSTTCCHHHHHHHHHHHHTTCHHHHHHHHHH----HSTTS-----CHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHH----HHHHh-----cCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 999888 8899998888764 333444444 77666 6666 3 78999999999999999998877
Q ss_pred HHHHhc------------c--cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003035 772 INALDI------------K--HTRAHQGLARVYYLKNELKAAYDEMTKLL 807 (855)
Q Consensus 772 ~kAL~~------------~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal 807 (855)
.+.... . +.++++.....|. +....++..+..++
T Consensus 306 ~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l 353 (449)
T 1b89_A 306 MNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVL 353 (449)
T ss_dssp HHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHH
T ss_pred HhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHH
Confidence 766533 1 5666666665555 33344555555555
No 138
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.46 E-value=4.5e-14 Score=165.89 Aligned_cols=180 Identities=5% Similarity=-0.057 Sum_probs=158.9
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCC--
Q 003035 655 CQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGH----------REEALSRAEKSISIERTF-EAFFLKAYILADTN-- 721 (855)
Q Consensus 655 ~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~----------~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g-- 721 (855)
..++|++.+++++..+|++..+|+++|.++...|+ +++|+..++++++.+|++ .+|+.++.++...+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence 35678999999999999999999999999999888 899999999999999999 99999999999999
Q ss_pred CCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcC-CHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHc---
Q 003035 722 LDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECG-KLDQAENCYINALDIK--HTRAHQGLARVYYLK--- 793 (855)
Q Consensus 722 ~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g-~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~--- 793 (855)
+++++++. +++++ +.+|. .+|++.|.+....| .+++++++++++++.+ +..+|+++|.++...
T Consensus 124 ~~~~el~~----~~k~l-----~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 124 NWARELEL----CARFL-----EADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp CHHHHHHH----HHHHH-----HHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCC
T ss_pred cHHHHHHH----HHHHH-----hhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccc
Confidence 55899988 99999 78877 89999999999999 8999999999999998 899999999998885
Q ss_pred -----------CCHHHHHHHHHHHHHHccCCHHHHHHHhh----cCCHHH------------HHHHHHHHHhcCCCC
Q 003035 794 -----------NELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREM------------AKNDLNMATQLDPLR 843 (855)
Q Consensus 794 -----------g~~~~A~~~~~kal~~~p~~~~a~~~lg~----~g~~ee------------A~~~~~kAl~l~P~~ 843 (855)
+.+++|++++.+|+.++|++..+|+.+++ .+++++ |+..|+++++++|..
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~ 271 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRM 271 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBTT
T ss_pred ccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccccc
Confidence 56799999999999999999999999999 555444 566688888888764
No 139
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.43 E-value=2.1e-12 Score=138.38 Aligned_cols=167 Identities=14% Similarity=0.130 Sum_probs=141.4
Q ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-------HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCC
Q 003035 670 SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-------EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPS 742 (855)
Q Consensus 670 ~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-------~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~ 742 (855)
+|.....+...+..+...|++++|+..++++++..|.. ..++.+|..+...|++++|+.. ++++++...
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~----~~~al~~~~ 146 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILE----LKKLLNQQL 146 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHH----HHHHHTTCC
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHH----HHHHHHHHh
Confidence 34455666778999999999999999999999987653 4467789999999999999999 999995443
Q ss_pred CCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 003035 743 DGLRKG---QALNNLGSIYVECGKLDQAENCYINALDIK---------HTRAHQGLARVYYLKNELKAAYDEMTKLLEKA 810 (855)
Q Consensus 743 ~~~~p~---~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~---------~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~ 810 (855)
...++. .+++++|.+|...|++++|+.+|++|+++. ...+++++|.+|..+|++++|+.++++++++.
T Consensus 147 ~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 147 TGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp CSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 322222 799999999999999999999999999652 22699999999999999999999999999987
Q ss_pred cC------CHHHHHHHhh----cCCHHHH-HHHHHHHHhcC
Q 003035 811 QY------SASAFEKRSE----YSDREMA-KNDLNMATQLD 840 (855)
Q Consensus 811 p~------~~~a~~~lg~----~g~~eeA-~~~~~kAl~l~ 840 (855)
++ .+.+|+++|. .|++++| ..+|++|+.+.
T Consensus 227 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 227 CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 54 2788999998 8999999 88899998763
No 140
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.43 E-value=4.6e-12 Score=135.79 Aligned_cols=162 Identities=12% Similarity=-0.046 Sum_probs=137.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH------HHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-------HHHH
Q 003035 645 RQSLLLLRLNCQKAAMRCLRLARNHSSSEHER------LVYEGWILYDTGHREEALSRAEKSISIERTF-------EAFF 711 (855)
Q Consensus 645 ~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~------~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-------~a~~ 711 (855)
..+..+...|++++|...++++++..+..++. +..+|.++...|++++|+..|++++++.+.. .++.
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667889999999999999999988876652 3358999999999999999999999975443 3789
Q ss_pred HHHHHHHHCCCCchhHHHHHHHHHHHhcCCCC--CCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--c------
Q 003035 712 LKAYILADTNLDPESSTYVIQLLEEALRCPSD--GLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--H------ 779 (855)
Q Consensus 712 ~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~--~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~------ 779 (855)
++|.+|...|++++|+.+ |+++++.... ...+. .+++++|.+|..+|++++|++++++++++. .
T Consensus 160 ~lg~~y~~~g~~~~A~~~----~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~ 235 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDL----FEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHTTCHHHHHHH----HHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTH
T ss_pred HHHHHHHHcCCHHHHHHH----HHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 999999999999999999 9998842211 12222 799999999999999999999999999876 1
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHc
Q 003035 780 TRAHQGLARVYYLKN-ELKAAYDEMTKLLEKA 810 (855)
Q Consensus 780 ~~a~~~lg~~~~~~g-~~~~A~~~~~kal~~~ 810 (855)
..+++++|.++..+| ++++|++.|++|+++.
T Consensus 236 ~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 789999999999999 5799999999999874
No 141
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.41 E-value=2.3e-12 Score=118.45 Aligned_cols=129 Identities=22% Similarity=0.316 Sum_probs=67.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCC
Q 003035 643 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTN 721 (855)
Q Consensus 643 ~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g 721 (855)
++.+|..+...|++++|+..|+++++.+|++...++.+|.++...|++++|+..++++++..|+. .+++.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--------- 74 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN--------- 74 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH---------
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHH---------
Confidence 44445555555555555555555555555555555555555555555555555555555554444 44444
Q ss_pred CCchhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHH
Q 003035 722 LDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAA 799 (855)
Q Consensus 722 ~~~~A~~~~~~lle~al~~~~~~~~p~~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A 799 (855)
+|.++...|++++|++.++++++.. +..++..+|.++...|++++|
T Consensus 75 --------------------------------l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 122 (136)
T 2fo7_A 75 --------------------------------LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA 122 (136)
T ss_dssp --------------------------------HHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred --------------------------------HHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHH
Confidence 4444444444444444444444444 444555555555555555555
Q ss_pred HHHHHHHHHHccC
Q 003035 800 YDEMTKLLEKAQY 812 (855)
Q Consensus 800 ~~~~~kal~~~p~ 812 (855)
+..++++++.+|+
T Consensus 123 ~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 123 IEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHHSTT
T ss_pred HHHHHHHHccCCC
Confidence 5555555555554
No 142
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.41 E-value=1.8e-13 Score=131.48 Aligned_cols=100 Identities=8% Similarity=-0.106 Sum_probs=48.9
Q ss_pred HHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-H
Q 003035 630 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-E 708 (855)
Q Consensus 630 ~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~ 708 (855)
.+++..+|.+...++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++ .
T Consensus 11 ~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 90 (148)
T 2vgx_A 11 AMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPR 90 (148)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH
T ss_pred HHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch
Confidence 344444444444444444444444444444444444444444444444444444444444444444444444444444 4
Q ss_pred HHHHHHHHHHHCCCCchhHHH
Q 003035 709 AFFLKAYILADTNLDPESSTY 729 (855)
Q Consensus 709 a~~~lg~~~~~~g~~~~A~~~ 729 (855)
+++++|.+|...|++++|+..
T Consensus 91 ~~~~lg~~~~~~g~~~~A~~~ 111 (148)
T 2vgx_A 91 FPFHAAECLLQXGELAEAESG 111 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHH
Confidence 444444444444444444444
No 143
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.40 E-value=1.5e-12 Score=125.14 Aligned_cols=108 Identities=12% Similarity=0.034 Sum_probs=103.8
Q ss_pred HHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 003035 734 LEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEK 809 (855)
Q Consensus 734 le~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~ 809 (855)
|++++ .++|+ .+++++|.++...|++++|+..|+++++++ ++.+++++|.++..+|++++|+..|++++++
T Consensus 10 ~~~al-----~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 10 IAMLN-----EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp HHHHT-----TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHH-----cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 88999 89998 899999999999999999999999999999 9999999999999999999999999999999
Q ss_pred ccCCHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCCccc
Q 003035 810 AQYSASAFEKRSE----YSDREMAKNDLNMATQLDPLRTYP 846 (855)
Q Consensus 810 ~p~~~~a~~~lg~----~g~~eeA~~~~~kAl~l~P~~~~~ 846 (855)
+|+++.+++.+|. .|++++|+..|+++++++|+++..
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 9999999999999 999999999999999999987654
No 144
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.40 E-value=6.1e-13 Score=140.63 Aligned_cols=189 Identities=14% Similarity=0.008 Sum_probs=169.3
Q ss_pred chHHHHHHHHHcCCCChHHHHHH-------HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH-------------------
Q 003035 624 GSLAVINQMLINDPGKSFLRFRQ-------SLLLLRLNCQKAAMRCLRLARNHSSSEHERL------------------- 677 (855)
Q Consensus 624 ~al~~~~~~l~~~p~~~~~~~~~-------a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~------------------- 677 (855)
.+...+.++++.+|....+|..+ +.++.+.++..+++..+++++.+.|....++
T Consensus 24 ~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~d 103 (282)
T 4f3v_A 24 RSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLA 103 (282)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHHH
T ss_pred HHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHhH
Confidence 46778999999999999999999 8899999999999999999999888654444
Q ss_pred --HHHHHHHHHCCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCC-CH---HHHH
Q 003035 678 --VYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGL-RK---GQAL 751 (855)
Q Consensus 678 --~~lg~~~~~~g~~~eAl~~~~kal~~~p~~~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~-~p---~~a~ 751 (855)
..++.++...|++++|.+.|+..+...|+..+.+.+|.++...+++++|+.. |++++ .. +| ..++
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~----l~~a~-----~~~d~~~~~~a~ 174 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQ----VKSAG-----KWPDKFLAGAAG 174 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHH----HTTGG-----GCSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHH----HHHhh-----ccCCcccHHHHH
Confidence 4478899999999999999999999998777889999999999999999999 99887 33 34 2799
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh
Q 003035 752 NNLGSIYVECGKLDQAENCYINALDIK-----HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE 822 (855)
Q Consensus 752 ~~LG~~y~~~g~~~~A~~~~~kAL~~~-----~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~ 822 (855)
+++|.++..+|++++|+.+|++++.-. .+.+++++|.++..+|+.++|...|++++..+|+ +.+...|..
T Consensus 175 ~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 175 VAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 999999999999999999999999655 3468999999999999999999999999999999 998888877
No 145
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.40 E-value=1.1e-13 Score=152.17 Aligned_cols=138 Identities=14% Similarity=0.109 Sum_probs=86.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh----------------HHHHHHHHH
Q 003035 653 LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF----------------EAFFLKAYI 716 (855)
Q Consensus 653 ~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~----------------~a~~~lg~~ 716 (855)
++++++|+..++++++.+|+.+.+++.+|.+++..|++++|+..|+++++++|++ .+++++|.+
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777788888888888888888888888888888888888888876 344445555
Q ss_pred HHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHH
Q 003035 717 LADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYL 792 (855)
Q Consensus 717 ~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~ 792 (855)
|..+|++++|+.. |++++ .++|+ .+++++|.+|..+|++++|+.+|+++++++ +..++.++|.++..
T Consensus 206 ~~~~g~~~~A~~~----~~~al-----~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 206 HLKLQAFSAAIES----CNKAL-----ELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 276 (336)
T ss_dssp HHHTTCHHHHHHH----HHHHH-----HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHH----HHHHH-----HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 5555555555444 45554 44443 444455555555555555555555555444 44444455555554
Q ss_pred cCCHHHH
Q 003035 793 KNELKAA 799 (855)
Q Consensus 793 ~g~~~~A 799 (855)
+|++++|
T Consensus 277 ~~~~~~a 283 (336)
T 1p5q_A 277 IRRQLAR 283 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 146
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.40 E-value=2.1e-12 Score=130.56 Aligned_cols=132 Identities=17% Similarity=0.151 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHH
Q 003035 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILA 718 (855)
Q Consensus 640 ~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~ 718 (855)
...++.+|..+...|++++|+..|++++ +| ++.+++.+|.++...|++++|+..|+++++++|++ .+++++|.++.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 3456677777777777777777777774 33 56677777777777777777777777777777777 77777777777
Q ss_pred HCCCCchhHHHHHHHHHHHhcCCCCC-----------CCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 003035 719 DTNLDPESSTYVIQLLEEALRCPSDG-----------LRKG--QALNNLGSIYVECGKLDQAENCYINALDIK 778 (855)
Q Consensus 719 ~~g~~~~A~~~~~~lle~al~~~~~~-----------~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~ 778 (855)
..|++++|+.. |+++++...+. ..|. .++.++|.+|...|++++|++.|++++++.
T Consensus 83 ~~~~~~~A~~~----~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKD----LKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHH----HHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHH----HHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 77777777777 77777322111 1111 444444444444444444444444444444
No 147
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.39 E-value=6.6e-12 Score=134.54 Aligned_cols=160 Identities=14% Similarity=0.146 Sum_probs=134.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-H------HHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCH-H
Q 003035 677 LVYEGWILYDTGHREEALSRAEKSISIERTF-E------AFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK-G 748 (855)
Q Consensus 677 ~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~------a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p-~ 748 (855)
+...+..+...|++++|+..++++++..+.. . .+..+|..+...+++++|+.. |+++++......+. .
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~----~~~al~~~~~~~~~~~ 153 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILE----LKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHH----HHHHHHTCCCCSCTTH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHH----HHHHHHHhcccccHHH
Confidence 3445778899999999999999999987754 2 334589999999999999999 99999633222222 1
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHhc------c---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCC----
Q 003035 749 --QALNNLGSIYVECGKLDQAENCYINALDI------K---HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS---- 813 (855)
Q Consensus 749 --~a~~~LG~~y~~~g~~~~A~~~~~kAL~~------~---~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~---- 813 (855)
.+++++|.+|...|++++|+.+|+++++. + ...+++++|.+|..+|++++|++++++++++.++.
T Consensus 154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~ 233 (293)
T 3u3w_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH
Confidence 68999999999999999999999999953 2 45689999999999999999999999999987655
Q ss_pred --HHHHHHHhh----cC-CHHHHHHHHHHHHhcC
Q 003035 814 --ASAFEKRSE----YS-DREMAKNDLNMATQLD 840 (855)
Q Consensus 814 --~~a~~~lg~----~g-~~eeA~~~~~kAl~l~ 840 (855)
+.+|+.+|. .| ++++|+.+|++|+.+.
T Consensus 234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 889999999 88 5799999999999873
No 148
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.39 E-value=1.1e-11 Score=123.80 Aligned_cols=159 Identities=11% Similarity=0.016 Sum_probs=129.8
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------cCCh-HHHHHHHHHHHHCCC
Q 003035 650 LLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI------ERTF-EAFFLKAYILADTNL 722 (855)
Q Consensus 650 l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~------~p~~-~a~~~lg~~~~~~g~ 722 (855)
++..|++++|.+.++......+....++..+|.++...|++++|+..+++++++ .|.. .++..+|.++...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 356899999999666655544478899999999999999999999999999994 3334 889999999999999
Q ss_pred CchhHHHHHHHHHHHhcCCCCCC-CH-H--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--------cHHHHHHHHHHH
Q 003035 723 DPESSTYVIQLLEEALRCPSDGL-RK-G--QALNNLGSIYVECGKLDQAENCYINALDIK--------HTRAHQGLARVY 790 (855)
Q Consensus 723 ~~~A~~~~~~lle~al~~~~~~~-~p-~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--------~~~a~~~lg~~~ 790 (855)
+++|+.. ++++++.....- .+ . .+++++|.++...|++++|+..+++++++. ...++.++|.++
T Consensus 82 ~~~A~~~----~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 157 (203)
T 3gw4_A 82 WDAARRC----FLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLA 157 (203)
T ss_dssp HHHHHHH----HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 9999999 888884321111 34 2 789999999999999999999999999764 234678999999
Q ss_pred HHcCCHHHHHHHHHHHHHHccC
Q 003035 791 YLKNELKAAYDEMTKLLEKAQY 812 (855)
Q Consensus 791 ~~~g~~~~A~~~~~kal~~~p~ 812 (855)
..+|++++|+..+++++++...
T Consensus 158 ~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 158 QQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987543
No 149
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.39 E-value=5.2e-13 Score=142.69 Aligned_cols=162 Identities=12% Similarity=0.008 Sum_probs=137.7
Q ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH-
Q 003035 671 SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG- 748 (855)
Q Consensus 671 p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~- 748 (855)
|+++..++.+|..++..|++++|+..|+++++.+|++ .+++++|.+|...|++++|+.. +++++ .++|+
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~----~~~al-----~~~p~~ 71 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALAD----CRRAL-----ELDGQS 71 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHH----HHHHT-----TSCTTC
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHH----HHHHH-----HhCCCC
Confidence 6778999999999999999999999999999999999 9999999999999999999999 99999 88888
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh--c
Q 003035 749 -QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE--Y 823 (855)
Q Consensus 749 -~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~--~ 823 (855)
.+++++|.+|...|++++|+..|+++++++ +...+....+.... ..++..+........|+++.+...++. .
T Consensus 72 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~ 148 (281)
T 2c2l_A 72 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKKKRWNSIEERRIHQESELHSYLTRLIA 148 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHHHHHHHHHTCCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 999999999999999999999999999987 32222222233222 233344444444567888888888888 8
Q ss_pred CCHHHHHHHHHHHHhcCCCCc
Q 003035 824 SDREMAKNDLNMATQLDPLRT 844 (855)
Q Consensus 824 g~~eeA~~~~~kAl~l~P~~~ 844 (855)
|++++|++.+++|++++|++.
T Consensus 149 ~~~~~A~~~~~~al~~~p~~~ 169 (281)
T 2c2l_A 149 AERERELEECQRNHEGHEDDG 169 (281)
T ss_dssp HHHHHHHTTTSGGGTTTSCHH
T ss_pred HHHHHHHHHHHhhhccccchh
Confidence 999999999999999999764
No 150
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.38 E-value=5.3e-12 Score=115.95 Aligned_cols=112 Identities=16% Similarity=0.162 Sum_probs=106.7
Q ss_pred cchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 003035 623 IGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS 702 (855)
Q Consensus 623 ~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~ 702 (855)
..++..+.++++.+|.+...++.+|.++...|++++|+..++++++..|+++..++.+|.++...|++++|+..++++++
T Consensus 18 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 97 (136)
T 2fo7_A 18 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 97 (136)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 35678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHh
Q 003035 703 IERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEAL 738 (855)
Q Consensus 703 ~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al 738 (855)
..|+. .+++.+|.++...|++++|... +++++
T Consensus 98 ~~~~~~~~~~~la~~~~~~~~~~~A~~~----~~~~~ 130 (136)
T 2fo7_A 98 LDPRSAEAWYNLGNAYYKQGDYDEAIEY----YQKAL 130 (136)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHH----HHHHH
T ss_pred hCCCChHHHHHHHHHHHHHccHHHHHHH----HHHHH
Confidence 99988 9999999999999999999999 99888
No 151
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.37 E-value=3.1e-13 Score=158.68 Aligned_cols=181 Identities=11% Similarity=0.056 Sum_probs=166.8
Q ss_pred chHHHHHHHHHcCCCChHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC--CHH
Q 003035 624 GSLAVINQMLINDPGKSFLRFRQSLLLLRLNC----------QKAAMRCLRLARNHSSSEHERLVYEGWILYDTG--HRE 691 (855)
Q Consensus 624 ~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~----------~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g--~~~ 691 (855)
+++..+.++++.+|++..+|..++.++...|+ +++|++.++++++.+|++..+|+.+++++...| +++
T Consensus 47 eal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~ 126 (567)
T 1dce_A 47 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWA 126 (567)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHH
Confidence 35788899999999999999999999999998 999999999999999999999999999999999 779
Q ss_pred HHHHHHHHHHhccCCh-HHHHHHHHHHHHCC-CCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHc------
Q 003035 692 EALSRAEKSISIERTF-EAFFLKAYILADTN-LDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVEC------ 761 (855)
Q Consensus 692 eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g-~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~------ 761 (855)
+|++.++++++++|.+ .+|..++.++...| .+++++++ ++++| ..+|. .+|+++|.++...
T Consensus 127 ~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~----~~~~I-----~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 127 RELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF----TDSLI-----TRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHH----HHTTT-----TTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHH----HHHHH-----HHCCCCccHHHHHHHHHHhhcccccc
Confidence 9999999999999999 99999999999999 88999999 99999 88887 9999999999885
Q ss_pred --------CCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHH------------HHHHHHHHHHHccCC
Q 003035 762 --------GKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKA------------AYDEMTKLLEKAQYS 813 (855)
Q Consensus 762 --------g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~------------A~~~~~kal~~~p~~ 813 (855)
+++++|++++.+|+.++ +..+|+.+++++...+++++ |+..|.++++++|..
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~ 271 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRM 271 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBTT
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccccc
Confidence 56899999999999999 99999999999999888665 566677888777763
No 152
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.36 E-value=1e-12 Score=124.80 Aligned_cols=106 Identities=8% Similarity=-0.114 Sum_probs=61.5
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-
Q 003035 629 INQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF- 707 (855)
Q Consensus 629 ~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~- 707 (855)
+.++++.+|.+...++.+|..++..|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..|+++++++|++
T Consensus 7 l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 86 (142)
T 2xcb_A 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEP 86 (142)
T ss_dssp --CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 4445555555555555555555566666666666666666666555555566666666666666666666666655555
Q ss_pred HHHHHHHHHHHHCCCCchhHHHHHHHHHHHh
Q 003035 708 EAFFLKAYILADTNLDPESSTYVIQLLEEAL 738 (855)
Q Consensus 708 ~a~~~lg~~~~~~g~~~~A~~~~~~lle~al 738 (855)
.+++.+|.++...|++++|+.. |++++
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~----~~~al 113 (142)
T 2xcb_A 87 RFPFHAAECHLQLGDLDGAESG----FYSAR 113 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHH----HHHHH
Confidence 5555555555555555555555 55555
No 153
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.36 E-value=1.2e-12 Score=124.45 Aligned_cols=94 Identities=14% Similarity=0.082 Sum_probs=46.5
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcC
Q 003035 662 CLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRC 740 (855)
Q Consensus 662 ~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~ 740 (855)
.|+++++.+|++.+.++.+|.+++..|++++|+..|++++..+|++ .+|+.+|.++...|++++|+.. |++++
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~----~~~al-- 79 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQS----YSYGA-- 79 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH----HHHHH--
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHH----HHHHH--
Confidence 3444445555555555555555555555555555555555555554 5555555555555555555555 55555
Q ss_pred CCCCCCHH--HHHHHHHHHHHHcCCH
Q 003035 741 PSDGLRKG--QALNNLGSIYVECGKL 764 (855)
Q Consensus 741 ~~~~~~p~--~a~~~LG~~y~~~g~~ 764 (855)
.++|+ .++.++|.+|...|++
T Consensus 80 ---~~~p~~~~~~~~lg~~~~~~g~~ 102 (142)
T 2xcb_A 80 ---LMDINEPRFPFHAAECHLQLGDL 102 (142)
T ss_dssp ---HHCTTCTHHHHHHHHHHHHTTCH
T ss_pred ---hcCCCCcHHHHHHHHHHHHcCCH
Confidence 44444 4455555555555543
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.35 E-value=4.6e-12 Score=117.09 Aligned_cols=115 Identities=11% Similarity=-0.023 Sum_probs=104.0
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHH
Q 003035 637 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAY 715 (855)
Q Consensus 637 p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~ 715 (855)
|.++..++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++ .+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 34456788999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHCCCCchhHHHHHHHHHHHhcCCCCCCC------HH--HHHHHHHHHHHH
Q 003035 716 ILADTNLDPESSTYVIQLLEEALRCPSDGLR------KG--QALNNLGSIYVE 760 (855)
Q Consensus 716 ~~~~~g~~~~A~~~~~~lle~al~~~~~~~~------p~--~a~~~LG~~y~~ 760 (855)
++...|++++|+.. |++++ .+. |. .++..++.+...
T Consensus 81 ~~~~~~~~~~A~~~----~~~al-----~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 81 AQIAVKEYASALET----LDAAR-----TKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHTTCHHHHHHH----HHHHH-----HHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHH----HHHHH-----HhCcccCCchhHHHHHHHHHHHHHh
Confidence 99999999999999 99999 766 44 666666665543
No 155
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.35 E-value=4e-12 Score=118.57 Aligned_cols=105 Identities=15% Similarity=0.147 Sum_probs=73.0
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH---
Q 003035 673 EHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--- 748 (855)
Q Consensus 673 ~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--- 748 (855)
.+.++..+|.+++.+|++++|+..|+++++++|++ .+|+++|.+|..+|++++|+.. +++++ .+.|.
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~----~~~al-----~~~~~~~~ 77 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQF----CEKAV-----EVGRETRA 77 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH----HHHHH-----HHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHH----HHHHH-----HhCcccch
Confidence 34556667777777777777777777777777776 7777777777777777777777 77776 44433
Q ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-cHHHHHHH
Q 003035 749 ------QALNNLGSIYVECGKLDQAENCYINALDIK-HTRAHQGL 786 (855)
Q Consensus 749 ------~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~-~~~a~~~l 786 (855)
.++.++|.++..+|++++|+++|+++++.. ++.....+
T Consensus 78 ~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~l 122 (127)
T 4gcn_A 78 DYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKV 122 (127)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHHHH
Confidence 467778888888888888888888888776 65554433
No 156
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.34 E-value=1.6e-09 Score=129.01 Aligned_cols=391 Identities=9% Similarity=-0.044 Sum_probs=260.1
Q ss_pred HHHHHHHHHHHHHhcc--hhhhhhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHhh----ccC---cchHHHHHH
Q 003035 435 YKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSL----YNL---GREKIVDLN 505 (855)
Q Consensus 435 ~~eA~~~~~~Al~~~~--~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~----~~~---~~~A~~~l~ 505 (855)
.++-+..|+++|..++ ...+..++......+....+...+++++..+|.....+..-.. .+. .+.+...|+
T Consensus 48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 3455677888887654 5678888888888899999999999999999988665543321 244 578889999
Q ss_pred HHHHhCC--CCchhHHHHHHHHHHhCCH----HH----HHHHHHHHHc---c-CCC-HhHHHHHHHHH---------HHc
Q 003035 506 YASELDP--TLSFPYKYRAVAKMEEGQI----RA----AISEIDRIIV---F-KLS-VDCLELRAWLF---------IAA 561 (855)
Q Consensus 506 ~a~~ldP--~~~~a~~~~a~~~~~~~~~----~~----A~~~~~k~l~---~-~p~-~~~l~lra~~y---------~~~ 561 (855)
+++..-| .+...|..-.......++. ++ ....|++++. . ++. ...+.....+. ...
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 9999884 4555554433333333432 33 3477788774 3 553 33333222221 234
Q ss_pred CCHHHHHHHHHHHHhcCCchhh--hh-------cccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHH
Q 003035 562 DDYESALRDTLALLALESNYMM--FH-------GRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQM 632 (855)
Q Consensus 562 gd~~~A~~~~~~aL~~~P~~~~--~~-------~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~ 632 (855)
++.+.+...|+.+|.. |.... .. ..+........+.+....+..+..+..... .+...
T Consensus 208 ~~~~~~R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~------------~~~~~ 274 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWL------------NITKG 274 (679)
T ss_dssp HHHHHHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHH------------HHTTT
T ss_pred hHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHH------------HHHHh
Confidence 4577888899999964 43210 00 000000000111111111111111111000 00001
Q ss_pred HHc-C------------CC----C-hHHHHHHHHHHHHcCC---------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 003035 633 LIN-D------------PG----K-SFLRFRQSLLLLRLNC---------QKAAMRCLRLARNHSSSEHERLVYEGWILY 685 (855)
Q Consensus 633 l~~-~------------p~----~-~~~~~~~a~~l~~~g~---------~~~A~~~l~~al~~~p~~~~~~~~lg~~~~ 685 (855)
+.. . |. . .........+.....+ .+.....|++++...|..++.|+..+..+.
T Consensus 275 l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~ 354 (679)
T 4e6h_A 275 LKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQG 354 (679)
T ss_dssp CCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 110 0 10 0 1122222223233222 234567899999999999999999999999
Q ss_pred HCCCHHHHH-HHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCC------CH----------
Q 003035 686 DTGHREEAL-SRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGL------RK---------- 747 (855)
Q Consensus 686 ~~g~~~eAl-~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~------~p---------- 747 (855)
..|+.++|. ..|++|+...|.. ..++.++......|+++.|... |+++++...... .|
T Consensus 355 ~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~i----yek~l~~l~~~~~~~~~~~p~~~~~~~~~~ 430 (679)
T 4e6h_A 355 EKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETT----ILSCIDRIHLDLAALMEDDPTNESAINQLK 430 (679)
T ss_dssp HHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH----HHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH----HHHHHHHHHHHhhhhhhccCcchhhhhhhc
Confidence 999999997 9999999999988 8899999999999999999999 999884210000 01
Q ss_pred -H--HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-c--cHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHccCCHHHHHHH
Q 003035 748 -G--QALNNLGSIYVECGKLDQAENCYINALDI-K--HTRAHQGLARVYYLKN-ELKAAYDEMTKLLEKAQYSASAFEKR 820 (855)
Q Consensus 748 -~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~-~--~~~a~~~lg~~~~~~g-~~~~A~~~~~kal~~~p~~~~a~~~l 820 (855)
. .+|...+......|..+.|...|.+|++. . ...++...|.+....| +.+.|.+.|+++++..|+++..+...
T Consensus 431 ~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y 510 (679)
T 4e6h_A 431 SKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKY 510 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHH
Confidence 1 57888888888899999999999999987 4 5677777777777765 58999999999999999999998777
Q ss_pred hh----cCCHHHHHHHHHHHHhcCCC
Q 003035 821 SE----YSDREMAKNDLNMATQLDPL 842 (855)
Q Consensus 821 g~----~g~~eeA~~~~~kAl~l~P~ 842 (855)
+. .|+.+.|+..|++|+...|+
T Consensus 511 ~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 511 LDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 77 89999999999999999884
No 157
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.34 E-value=1.1e-12 Score=143.93 Aligned_cols=138 Identities=9% Similarity=0.001 Sum_probs=127.5
Q ss_pred HHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---------------HHHHHHHHHHHHHCCCHHHHH
Q 003035 630 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---------------HERLVYEGWILYDTGHREEAL 694 (855)
Q Consensus 630 ~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~eAl 694 (855)
.+.++.+|.++..++.+|.++...|++++|+..|+++++++|++ ..+++++|.++..+|++++|+
T Consensus 137 ~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~ 216 (336)
T 1p5q_A 137 EMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAI 216 (336)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 34455668888899999999999999999999999999999998 699999999999999999999
Q ss_pred HHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHH-HHH
Q 003035 695 SRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQA-ENC 770 (855)
Q Consensus 695 ~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A-~~~ 770 (855)
..|+++++++|++ .+++++|.+|...|++++|+.. |++++ .++|+ .++.++|.++..+|++++| ...
T Consensus 217 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~----~~~al-----~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~ 287 (336)
T 1p5q_A 217 ESCNKALELDSNNEKGLSRRGEAHLAVNDFELARAD----FQKVL-----QLYPNNKAAKTQLAVCQQRIRRQLAREKKL 287 (336)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH----HHHHH-----HHCSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH----HHHHH-----HHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 9999999999999999999999 99999 88887 8999999999999999999 557
Q ss_pred HHHHHh
Q 003035 771 YINALD 776 (855)
Q Consensus 771 ~~kAL~ 776 (855)
|++.+.
T Consensus 288 ~~~~~~ 293 (336)
T 1p5q_A 288 YANMFE 293 (336)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777665
No 158
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.34 E-value=9.9e-12 Score=119.59 Aligned_cols=128 Identities=11% Similarity=0.006 Sum_probs=94.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHH
Q 003035 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILA 718 (855)
Q Consensus 640 ~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~ 718 (855)
+..++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++.+|++ .+++.+|.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34566777788888888888888888888888888888888888888888888888888888888877 77777777777
Q ss_pred HCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHH--HHHHHHHHHcCCHHHHHHHHHHHHh
Q 003035 719 DTNLDPESSTYVIQLLEEALRCPSDGLRKG--QAL--NNLGSIYVECGKLDQAENCYINALD 776 (855)
Q Consensus 719 ~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~--~~LG~~y~~~g~~~~A~~~~~kAL~ 776 (855)
..|++++|+.. |++++ ...|. .++ ..++..+...|++++|++.++++..
T Consensus 93 ~~~~~~~A~~~----~~~a~-----~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRD----YETVV-----KVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHH----HHHHH-----HHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHH----HHHHH-----HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 77777777777 77777 55554 344 3334446666677777777666544
No 159
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.34 E-value=4.8e-11 Score=127.68 Aligned_cols=247 Identities=12% Similarity=0.074 Sum_probs=185.0
Q ss_pred HHHHHHhCCHHHHHHHHHHHHccCCC--HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHH
Q 003035 522 AVAKMEEGQIRAAISEIDRIIVFKLS--VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNH 599 (855)
Q Consensus 522 a~~~~~~~~~~~A~~~~~k~l~~~p~--~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~ 599 (855)
..-.+-.|+|.+++....+ ++|. ......+.+.|+.+|++.... .-.|. .....++..
T Consensus 20 ikn~fy~G~yq~~i~e~~~---~~~~~~~~~~~~~~Rs~iAlg~~~~~~-------~~~~~----------~~a~~~la~ 79 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEK---FSKVTDNTLLFYKAKTLLALGQYQSQD-------PTSKL----------GKVLDLYVQ 79 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHT---SSCCCCHHHHHHHHHHHHHTTCCCCCC-------SSSTT----------HHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHh---cCccchHHHHHHHHHHHHHcCCCccCC-------CCCHH----------HHHHHHHHH
Confidence 3456678999999986543 4442 345566778889999887421 11110 111222221
Q ss_pred HhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CcHHHH
Q 003035 600 HVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS--SEHERL 677 (855)
Q Consensus 600 ~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p--~~~~~~ 677 (855)
.. .. .++..+.+.++..+.+...++.+|.++...|++++|++.+.+.+..+| ++.+++
T Consensus 80 ~~-----------------~~---~a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~ 139 (310)
T 3mv2_B 80 FL-----------------DT---KNIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELL 139 (310)
T ss_dssp HH-----------------TT---TCCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHH
T ss_pred Hh-----------------cc---cHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHH
Confidence 11 11 135566777776666677778999999999999999999999999997 899999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhccCC-----hHHHHHH--HHHHHHCC--CCchhHHHHHHHHHHHhcCCCCCCCHH
Q 003035 678 VYEGWILYDTGHREEALSRAEKSISIERT-----FEAFFLK--AYILADTN--LDPESSTYVIQLLEEALRCPSDGLRKG 748 (855)
Q Consensus 678 ~~lg~~~~~~g~~~eAl~~~~kal~~~p~-----~~a~~~l--g~~~~~~g--~~~~A~~~~~~lle~al~~~~~~~~p~ 748 (855)
..++.++..+|+.+.|.+.+++..+.+|+ +.....+ |++....| ++.+|... |+++. ...|+
T Consensus 140 ~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~----f~El~-----~~~p~ 210 (310)
T 3mv2_B 140 LLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYY----YEELS-----QTFPT 210 (310)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHH----HHHHH-----TTSCS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHH----HHHHH-----HhCCC
Confidence 99999999999999999999999999993 4444444 54566556 89999999 99998 55553
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------c--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCH
Q 003035 749 --QALNNLGSIYVECGKLDQAENCYINALDI----------K--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSA 814 (855)
Q Consensus 749 --~a~~~LG~~y~~~g~~~~A~~~~~kAL~~----------~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~ 814 (855)
.....++ ++..+|++++|.+.+++.++. + ++.++.|++.+...+|+ +|.++++++.+.+|+++
T Consensus 211 ~~~~~lLln-~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 211 WKTQLGLLN-LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HHHHHHHHH-HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred cccHHHHHH-HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 2222222 899999999999999987775 2 88999999989999998 89999999999999999
Q ss_pred HHHHHH
Q 003035 815 SAFEKR 820 (855)
Q Consensus 815 ~a~~~l 820 (855)
.+...-
T Consensus 288 ~i~d~~ 293 (310)
T 3mv2_B 288 FIKHHQ 293 (310)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987543
No 160
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.34 E-value=1.5e-11 Score=124.17 Aligned_cols=129 Identities=15% Similarity=0.053 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH------
Q 003035 675 ERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG------ 748 (855)
Q Consensus 675 ~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~------ 748 (855)
..++.+|.++...|++++|+..|++++ +|+..+++.+|.++...|++++|+.. |++++ ...|+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~----~~~al-----~~~~~~~~~~~ 75 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKA----FTRSI-----NRDKHLAVAYF 75 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHH----HHHHH-----HHCTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHH----HHHHH-----HhCccchHHHH
Confidence 345667777777777777777777774 33337777777777777777777777 77777 33332
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHH---------Hhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCH
Q 003035 749 ---QALNNLGSIYVECGKLDQAENCYINA---------LDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSA 814 (855)
Q Consensus 749 ---~a~~~LG~~y~~~g~~~~A~~~~~kA---------L~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~ 814 (855)
.++..+|..-.....+++|++....- +... .+.+++++|.++..+|++++|++.|+++++++|++.
T Consensus 76 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 76 QRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 45555554444444444444321110 0011 346777777777777777777777777777777553
No 161
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.31 E-value=1.2e-11 Score=114.02 Aligned_cols=119 Identities=15% Similarity=0.104 Sum_probs=112.6
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHH
Q 003035 636 DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKA 714 (855)
Q Consensus 636 ~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg 714 (855)
.|.+...++.+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..++++++.+|++ .+++.+|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 467788999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCC
Q 003035 715 YILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGK 763 (855)
Q Consensus 715 ~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~ 763 (855)
.++...|++++|+.. |++++ ...|. .++..+|.++..+|+
T Consensus 92 ~~~~~~~~~~~A~~~----~~~~~-----~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDV----YQKAL-----DLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHH----HHHHH-----HHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHH----HHHHH-----HhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999 99999 77777 889999999988764
No 162
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.31 E-value=5e-12 Score=124.23 Aligned_cols=119 Identities=14% Similarity=0.137 Sum_probs=97.1
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHH-HHHCCCC--chh
Q 003035 651 LRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYI-LADTNLD--PES 726 (855)
Q Consensus 651 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~-~~~~g~~--~~A 726 (855)
...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++ .+++.+|.+ +...|++ ++|
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 456788899999999999999999999999999999999999999999999999988 888888888 7788888 888
Q ss_pred HHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 003035 727 STYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK 778 (855)
Q Consensus 727 ~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~ 778 (855)
+.. +++++ ...|+ .++.++|.+|...|++++|+..|+++++++
T Consensus 101 ~~~----~~~al-----~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 101 RAM----IDKAL-----ALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHH----HHHHH-----HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHH----HHHHH-----HhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 888 88888 66665 777778888888888888888888887776
No 163
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.31 E-value=2.3e-11 Score=117.06 Aligned_cols=128 Identities=13% Similarity=0.048 Sum_probs=102.5
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--H
Q 003035 673 EHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--Q 749 (855)
Q Consensus 673 ~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~ 749 (855)
.+..++.+|.+++..|++++|+..|+++++.+|++ .+++.+|.++...|++++|+.. +++++ ...|. .
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~----~~~a~-----~~~~~~~~ 82 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGD----ATRAI-----ELDKKYIK 82 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHH----HHHHH-----HHCTTCHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHH----HHHHH-----HhCcccHH
Confidence 35677888999999999999999999999988888 8888888888888888888888 88888 66665 7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHH
Q 003035 750 ALNNLGSIYVECGKLDQAENCYINALDIK--HTRAH--QGLARVYYLKNELKAAYDEMTKLLEK 809 (855)
Q Consensus 750 a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~--~~lg~~~~~~g~~~~A~~~~~kal~~ 809 (855)
++.++|.++...|++++|+.+|++++++. +..++ ..++..+...|++++|++.+.++.+.
T Consensus 83 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 83 GYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 78888888888888888888888888877 55555 44444477778888888888776654
No 164
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.29 E-value=2.2e-11 Score=118.29 Aligned_cols=104 Identities=14% Similarity=0.085 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh----
Q 003035 749 QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE---- 822 (855)
Q Consensus 749 ~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~---- 822 (855)
.++..+|.++...|++++|+++|+++++++ ++.+++++|.++..+|++++|+..|+++++++|+++.+|+.+|.
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 889999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcccchhhhc
Q 003035 823 YSDREMAKNDLNMATQLDPLRTYPYRYRAA 852 (855)
Q Consensus 823 ~g~~eeA~~~~~kAl~l~P~~~~~~~~~a~ 852 (855)
.|++++|+.+|+++++++|++...|..++.
T Consensus 92 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 92 MADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 999999999999999999999987776654
No 165
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.28 E-value=1.2e-11 Score=113.31 Aligned_cols=120 Identities=16% Similarity=0.141 Sum_probs=112.4
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHH
Q 003035 636 DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKA 714 (855)
Q Consensus 636 ~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg 714 (855)
+|.+...++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++.+|++ .+++.+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 455677889999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCH
Q 003035 715 YILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKL 764 (855)
Q Consensus 715 ~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~ 764 (855)
.++...|++++|+.. +++++ ...|+ .++..+|.++...|++
T Consensus 88 ~~~~~~~~~~~A~~~----~~~~~-----~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAY----YKKAL-----ELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHH----HHHHH-----HHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHH----HHHHH-----hcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999 99999 77776 8899999999988875
No 166
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.28 E-value=1.9e-11 Score=112.70 Aligned_cols=117 Identities=14% Similarity=0.111 Sum_probs=86.7
Q ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH
Q 003035 670 SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG 748 (855)
Q Consensus 670 ~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~ 748 (855)
.|....+++.+|.++...|++++|+..|+++++.+|++ .+++.+|.++...|++++|+.. +++++ ...|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~----~~~a~-----~~~~~ 82 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKD----CEECI-----QLEPT 82 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHH----HHHHH-----HHCTT
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHH----HHHHH-----HhCCC
Confidence 45667777777777777777777777777777777777 7777777777777777777777 77777 55555
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCC
Q 003035 749 --QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNE 795 (855)
Q Consensus 749 --~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~ 795 (855)
.++.++|.++...|++++|+++|+++++++ +..++..+|.++..+|+
T Consensus 83 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 83 FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 677777777777777777777777777776 66677777777766653
No 167
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.27 E-value=1.4e-11 Score=119.64 Aligned_cols=113 Identities=12% Similarity=-0.006 Sum_probs=103.6
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHH
Q 003035 636 DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKA 714 (855)
Q Consensus 636 ~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg 714 (855)
++.++..++.+|..++..|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..|+++++++|++ .+++.+|
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 455677899999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHH
Q 003035 715 YILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSI 757 (855)
Q Consensus 715 ~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~ 757 (855)
.+|...|++++|+.. |++++ .+.|+ .++.++|..
T Consensus 87 ~~~~~~g~~~~A~~~----~~~al-----~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 87 LARFDMADYKGAKEA----YEKGI-----EAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHHTTCHHHHHHH----HHHHH-----HHHSSSCCHHHHHHHH
T ss_pred HHHHHccCHHHHHHH----HHHHH-----HhCCCchHHHHHHHHH
Confidence 999999999999999 99999 66666 555555544
No 168
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.27 E-value=5.7e-11 Score=133.73 Aligned_cols=195 Identities=11% Similarity=-0.024 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH-----------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q 003035 641 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH-----------------ERLVYEGWILYDTGHREEALSRAEKSISI 703 (855)
Q Consensus 641 ~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~-----------------~~~~~lg~~~~~~g~~~eAl~~~~kal~~ 703 (855)
...+..|.-+...|++++|++.|.++++..|+.. .++..+|.+|..+|++++|+..++++++.
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4466778888999999999999999999988653 35789999999999999999999999998
Q ss_pred cCCh-------HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCC---CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003035 704 ERTF-------EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPS---DGLRKGQALNNLGSIYVECGKLDQAENCYIN 773 (855)
Q Consensus 704 ~p~~-------~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~---~~~~p~~a~~~LG~~y~~~g~~~~A~~~~~k 773 (855)
.+.. .+...+|.++...|++++|+.. +++++.... .......++.+||.+|...|++++|...+++
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 160 (434)
T 4b4t_Q 85 MMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFV----CEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALIND 160 (434)
T ss_dssp HHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHH----HHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHccchHHHHHHHHHHHHHHhCCCCHHHHHHH----HHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 7654 3456788888899999999999 777773211 1111127899999999999999999999999
Q ss_pred HHhcc--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccC---C----HHHHHHHhh----cCCHHHHHHHHH
Q 003035 774 ALDIK--------HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQY---S----ASAFEKRSE----YSDREMAKNDLN 834 (855)
Q Consensus 774 AL~~~--------~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~---~----~~a~~~lg~----~g~~eeA~~~~~ 834 (855)
++... ...++..+|.+|..+|++++|...+++++.+.+. . +..+..+|. .|++++|..+|.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~ 240 (434)
T 4b4t_Q 161 LLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFF 240 (434)
T ss_dssp HHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 98753 4678999999999999999999999999987543 2 345666666 899999999999
Q ss_pred HHHhc
Q 003035 835 MATQL 839 (855)
Q Consensus 835 kAl~l 839 (855)
++++.
T Consensus 241 ~a~~~ 245 (434)
T 4b4t_Q 241 ESFES 245 (434)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99875
No 169
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.26 E-value=2.7e-11 Score=111.89 Aligned_cols=105 Identities=12% Similarity=-0.003 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHH
Q 003035 708 EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAH 783 (855)
Q Consensus 708 ~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~ 783 (855)
..++.+|..+...|++++|+.. |++++ ..+|+ .++.++|.+|...|++++|+..|+++++++ ++.++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~----~~~al-----~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 75 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKA----YTEMI-----KRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAY 75 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHH----HHHHH-----HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHH----HHHHH-----HhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHH
Confidence 4455566666666666666666 66666 55554 566666666666666666666666666665 55666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHc------cCCHHHHHHHh
Q 003035 784 QGLARVYYLKNELKAAYDEMTKLLEKA------QYSASAFEKRS 821 (855)
Q Consensus 784 ~~lg~~~~~~g~~~~A~~~~~kal~~~------p~~~~a~~~lg 821 (855)
+++|.++..+|++++|+..|+++++++ |++..++..++
T Consensus 76 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~ 119 (126)
T 3upv_A 76 IRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 119 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHH
Confidence 666666666666666666666666666 55555544443
No 170
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.26 E-value=1.7e-11 Score=117.95 Aligned_cols=102 Identities=16% Similarity=0.090 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-c-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----
Q 003035 749 QALNNLGSIYVECGKLDQAENCYINALDIK-H-------------TRAHQGLARVYYLKNELKAAYDEMTKLLEK----- 809 (855)
Q Consensus 749 ~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~-~-------------~~a~~~lg~~~~~~g~~~~A~~~~~kal~~----- 809 (855)
..+.++|..+...|++++|+.+|++||+++ + ..+|.++|.++..+|++++|+..++++|++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 678899999999999999999999999998 4 239999999999999999999999999999
Q ss_pred --ccCCHHHH----HHHhh----cCCHHHHHHHHHHHHhcCCCCcccchhh
Q 003035 810 --AQYSASAF----EKRSE----YSDREMAKNDLNMATQLDPLRTYPYRYR 850 (855)
Q Consensus 810 --~p~~~~a~----~~lg~----~g~~eeA~~~~~kAl~l~P~~~~~~~~~ 850 (855)
+|+++.+| +++|. +|++++|+.+|++|++++|++.-.++=.
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 99999999 99999 9999999999999999999998766533
No 171
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.26 E-value=2.1e-11 Score=119.69 Aligned_cols=124 Identities=15% Similarity=0.154 Sum_probs=110.4
Q ss_pred HHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHH-HH
Q 003035 717 LADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARV-YY 791 (855)
Q Consensus 717 ~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~-~~ 791 (855)
+...|++++|+.. +++++ ...|. .++..+|.+|...|++++|+.+|+++++++ ++.++..+|.+ +.
T Consensus 20 ~~~~~~~~~A~~~----~~~al-----~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~ 90 (177)
T 2e2e_A 20 FASQQNPEAQLQA----LQDKI-----RANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYY 90 (177)
T ss_dssp CC-----CCCCHH----HHHHH-----HHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred hhhccCHHHHHHH----HHHHH-----HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4567899999999 99999 66776 899999999999999999999999999998 89999999999 88
Q ss_pred HcCCH--HHHHHHHHHHHHHccCCHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCCcccchh
Q 003035 792 LKNEL--KAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLDPLRTYPYRY 849 (855)
Q Consensus 792 ~~g~~--~~A~~~~~kal~~~p~~~~a~~~lg~----~g~~eeA~~~~~kAl~l~P~~~~~~~~ 849 (855)
..|++ ++|+..++++++.+|+++.++..+|. .|++++|+..|+++++++|++......
T Consensus 91 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 154 (177)
T 2e2e_A 91 QASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQL 154 (177)
T ss_dssp HTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHH
T ss_pred hcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHH
Confidence 99998 99999999999999999999999999 999999999999999999998654443
No 172
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.25 E-value=2e-11 Score=113.81 Aligned_cols=95 Identities=11% Similarity=0.029 Sum_probs=89.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh--------HHHH
Q 003035 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF--------EAFF 711 (855)
Q Consensus 640 ~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~--------~a~~ 711 (855)
+.++..+|..++++|++++|+..|+++++++|+++.++.++|.++..+|++++|+..|+++++++|++ .+++
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999998754 4788
Q ss_pred HHHHHHHHCCCCchhHHHHHHHHHHHh
Q 003035 712 LKAYILADTNLDPESSTYVIQLLEEAL 738 (855)
Q Consensus 712 ~lg~~~~~~g~~~~A~~~~~~lle~al 738 (855)
++|.++..+|++++|+.. |++++
T Consensus 88 ~lg~~~~~~~~~~~A~~~----~~kal 110 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQW----FHRSL 110 (127)
T ss_dssp HHHHHHHHTTCHHHHHHH----HHHHH
T ss_pred HHHHHHHHcCCHHHHHHH----HHHHH
Confidence 999999999999999999 99999
No 173
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.25 E-value=4.7e-12 Score=127.15 Aligned_cols=169 Identities=12% Similarity=-0.010 Sum_probs=116.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCC
Q 003035 644 FRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNL 722 (855)
Q Consensus 644 ~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~ 722 (855)
-..+......|+++.|.+.++...+..+.....+..+|..++..|++++|+..|++++++.|++ .....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~---------- 77 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ---------- 77 (198)
T ss_dssp --------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH----------
T ss_pred cchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh----------
Confidence 3344455566777777777766666666677778888888888888888888888888877754 11000
Q ss_pred CchhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHH
Q 003035 723 DPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAY 800 (855)
Q Consensus 723 ~~~A~~~~~~lle~al~~~~~~~~p~~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~ 800 (855)
.... ....+ ...++.++|.+|...|++++|+.+|+++++++ ++.+++++|.++..+|++++|+
T Consensus 78 ---~~~~----~~~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~ 142 (198)
T 2fbn_A 78 ---ILLD----KKKNI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAK 142 (198)
T ss_dssp ---HHHH----HHHHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred ---hHHH----HHHHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHH
Confidence 0111 11111 01688999999999999999999999999999 8999999999999999999999
Q ss_pred HHHHHHHHHccCCHHHHHHHhh----cCCHHHHH-HHHHHHH
Q 003035 801 DEMTKLLEKAQYSASAFEKRSE----YSDREMAK-NDLNMAT 837 (855)
Q Consensus 801 ~~~~kal~~~p~~~~a~~~lg~----~g~~eeA~-~~~~kAl 837 (855)
..|+++++++|+++.++..++. .++.+++. ..|.+.+
T Consensus 143 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 143 ENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998 55555555 3344443
No 174
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.25 E-value=1.5e-10 Score=123.83 Aligned_cols=248 Identities=10% Similarity=0.024 Sum_probs=168.8
Q ss_pred hhhhcHHHHHHHHHHHHHhcchhhhhhHHHHHHHhCChHHHHHHHHhHHHcCCCchHHHHHHhhccCcchHHHHHHHHHH
Q 003035 430 FEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASE 509 (855)
Q Consensus 430 l~~g~~~eA~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~p~~~~~y~~~~~~~~~~~A~~~l~~a~~ 509 (855)
+-.|+|..++.-.++.-...+....+.+.|+|+.+|++... .. .++...+......|.. ..|+..+++.++
T Consensus 24 fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~-------~~-~~~~~~a~~~la~~~~-~~a~~~l~~l~~ 94 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ-------DP-TSKLGKVLDLYVQFLD-TKNIEELENLLK 94 (310)
T ss_dssp HTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC-------CS-SSTTHHHHHHHHHHHT-TTCCHHHHHTTT
T ss_pred HHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC-------CC-CCHHHHHHHHHHHHhc-ccHHHHHHHHHh
Confidence 44688988887433211112234566778999999987531 12 2223223333333322 338888999888
Q ss_pred hCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHccCC---CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhc
Q 003035 510 LDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL---SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHG 586 (855)
Q Consensus 510 ldP~~~~a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p---~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~ 586 (855)
..+....++..+|.++...|++++|+..+.+.|..+| +.++..+.+.++..+|+.+.|.+.++++...+|+.....
T Consensus 95 ~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~- 173 (310)
T 3mv2_B 95 DKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGD- 173 (310)
T ss_dssp TSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHH-
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccc-
Confidence 8767777888999999999999999999999999886 367888889999999999999999999999998310000
Q ss_pred ccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHHHHHcCCC--ChHHHHHHHHHHHHcCCHHHHHHHHH
Q 003035 587 RVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG--KSFLRFRQSLLLLRLNCQKAAMRCLR 664 (855)
Q Consensus 587 ~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~--~~~~~~~~a~~l~~~g~~~~A~~~l~ 664 (855)
+.... ..+..|..+...... ...+..++..+.+..|+ ....++. +++.+|++++|.+.++
T Consensus 174 ----d~~l~---------~Laea~v~l~~g~~~--~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 174 ----NEMIL---------NLAESYIKFATNKET--ATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVE 235 (310)
T ss_dssp ----HHHHH---------HHHHHHHHHHHTCST--TTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHH
T ss_pred ----hHHHH---------HHHHHHHHHHhCCcc--HHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHH
Confidence 00000 012233333332221 22356677777776665 2333333 7888888888888888
Q ss_pred HHHhc----------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh
Q 003035 665 LARNH----------SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (855)
Q Consensus 665 ~al~~----------~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~ 707 (855)
.+++. +|++++++.++..+...+|+ +|.++++++.+.+|++
T Consensus 236 ~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 236 LLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred HHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence 77766 48888888888888888887 8888888888888887
No 175
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.25 E-value=2.5e-11 Score=111.15 Aligned_cols=120 Identities=20% Similarity=0.148 Sum_probs=99.3
Q ss_pred hcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCC
Q 003035 668 NHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR 746 (855)
Q Consensus 668 ~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~ 746 (855)
+.+|.++..++.+|.++...|++++|+..|+++++.+|++ .+++.+|.++...|++++|+.. +++++ ...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~----~~~~~-----~~~ 76 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQD----CERAI-----CID 76 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH----HHHHH-----HHC
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHH----HHHHH-----hcC
Confidence 3456677888889999999999999999999999998888 8888888888888888888888 88888 555
Q ss_pred HH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCH
Q 003035 747 KG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNEL 796 (855)
Q Consensus 747 p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~ 796 (855)
|. .++..+|.++...|++++|+..|++++++. ++.++..+|.++...|++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 77 PAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 65 778888888888888888888888888877 777888888888877764
No 176
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.23 E-value=5.2e-12 Score=126.87 Aligned_cols=146 Identities=14% Similarity=0.075 Sum_probs=111.8
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCChHHHHHHHHH
Q 003035 637 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYI 716 (855)
Q Consensus 637 p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~~a~~~lg~~ 716 (855)
+.....+..+|..++..|++++|+..|+++++..|++++.... .+....+.+. ..+++++|.+
T Consensus 35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-------------~~~~~~~~~~----~~~~~~la~~ 97 (198)
T 2fbn_A 35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ-------------ILLDKKKNIE----ISCNLNLATC 97 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH-------------HHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh-------------hHHHHHHHHH----HHHHHHHHHH
Confidence 3446678899999999999999999999999998876532110 0000111110 1678899999
Q ss_pred HHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHH
Q 003035 717 LADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYL 792 (855)
Q Consensus 717 ~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~ 792 (855)
+...|++++|+.. +++++ ...|+ .+++++|.+|...|++++|++.|+++++++ +..++..++.++..
T Consensus 98 ~~~~~~~~~A~~~----~~~al-----~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 98 YNKNKDYPKAIDH----ASKVL-----KIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHTTCHHHHHHH----HHHHH-----HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHH----HHHHH-----HhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 9999999999999 99999 77777 899999999999999999999999999998 89999999999999
Q ss_pred cCCHHHHH-HHHHHHHH
Q 003035 793 KNELKAAY-DEMTKLLE 808 (855)
Q Consensus 793 ~g~~~~A~-~~~~kal~ 808 (855)
.++..++. ..|.+.+.
T Consensus 169 ~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 98888777 44555444
No 177
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.23 E-value=7e-11 Score=110.17 Aligned_cols=100 Identities=13% Similarity=0.055 Sum_probs=96.1
Q ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHH
Q 003035 635 NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLK 713 (855)
Q Consensus 635 ~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~l 713 (855)
.+|.++..++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..++++++++|++ .+++.+
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHCCCCchhHHHHHHHHHHHh
Q 003035 714 AYILADTNLDPESSTYVIQLLEEAL 738 (855)
Q Consensus 714 g~~~~~~g~~~~A~~~~~~lle~al 738 (855)
|.++...|++++|+.. |++++
T Consensus 84 ~~~~~~~~~~~~A~~~----~~~a~ 104 (137)
T 3q49_B 84 GQCQLEMESYDEAIAN----LQRAY 104 (137)
T ss_dssp HHHHHHTTCHHHHHHH----HHHHH
T ss_pred HHHHHHHhhHHHHHHH----HHHHH
Confidence 9999999999999999 99999
No 178
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.23 E-value=3.8e-12 Score=145.85 Aligned_cols=139 Identities=14% Similarity=0.150 Sum_probs=82.1
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh----------------HHHHHHHHH
Q 003035 653 LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF----------------EAFFLKAYI 716 (855)
Q Consensus 653 ~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~----------------~a~~~lg~~ 716 (855)
++++++|+..|+.+++.+|+.+..++.+|.+++..|++++|+..|+++++++|++ .+|+++|.+
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 4455666667777777778888888888888888888888888888888888765 344444444
Q ss_pred HHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHH
Q 003035 717 LADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYL 792 (855)
Q Consensus 717 ~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~ 792 (855)
|..+|++++|+.. |++++ .++|+ .+|+++|.+|..+|++++|+.+|++|++++ +..++.+++.++..
T Consensus 327 ~~~~g~~~~A~~~----~~~al-----~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 397 (457)
T 1kt0_A 327 YLKLREYTKAVEC----CDKAL-----GLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKK 397 (457)
T ss_dssp HHHTTCHHHHHHH----HHHHH-----HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHH----HHHHH-----hcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4444444444444 44444 34443 444444444444444444444444444444 44444444444444
Q ss_pred cCCHHHHH
Q 003035 793 KNELKAAY 800 (855)
Q Consensus 793 ~g~~~~A~ 800 (855)
+|++++|.
T Consensus 398 ~~~~~~a~ 405 (457)
T 1kt0_A 398 AKEHNERD 405 (457)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.22 E-value=8.1e-11 Score=111.69 Aligned_cols=136 Identities=19% Similarity=0.148 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-------HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCC
Q 003035 674 HERLVYEGWILYDTGHREEALSRAEKSISIERTF-------EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR 746 (855)
Q Consensus 674 ~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-------~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~ 746 (855)
..++..+|.++...|++++|+..+++++++.+.. .++..+|.++...|++++|+.. ++++++......+
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~----~~~a~~~~~~~~~ 84 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEY----YKKTLLLARQLKD 84 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH----HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHH----HHHHHHHHHHhCC
Confidence 4566778888888888888888888887765432 4677788888888888888888 7777732221112
Q ss_pred HH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCC
Q 003035 747 KG---QALNNLGSIYVECGKLDQAENCYINALDIK--------HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS 813 (855)
Q Consensus 747 p~---~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--------~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~ 813 (855)
+. .++.++|.++...|++++|++.+++++++. ...++.++|.++..+|++++|++.+++++++....
T Consensus 85 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 162 (164)
T 3ro3_A 85 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 162 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Confidence 22 688899999999999999999999999874 35678899999999999999999999999886553
No 180
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.22 E-value=5.5e-11 Score=118.57 Aligned_cols=141 Identities=16% Similarity=0.109 Sum_probs=120.3
Q ss_pred HcCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---
Q 003035 634 INDP-GKSFLRFRQSLLLLRLNCQKAAMRCLRLARN------HSSSEHERLVYEGWILYDTGHREEALSRAEKSISI--- 703 (855)
Q Consensus 634 ~~~p-~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~------~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~--- 703 (855)
..+| ....++..+|.++...|++++|+..++++++ ..|....++..+|.++..+|++++|+..+++++++
T Consensus 19 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 98 (203)
T 3gw4_A 19 LAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLAS 98 (203)
T ss_dssp HTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4455 5678899999999999999999999999999 55667788999999999999999999999999998
Q ss_pred cC-C--h--HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003035 704 ER-T--F--EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG---QALNNLGSIYVECGKLDQAENCYINAL 775 (855)
Q Consensus 704 ~p-~--~--~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~---~a~~~LG~~y~~~g~~~~A~~~~~kAL 775 (855)
.+ + . .+++++|.++...|++++|+.. ++++++.....-++. .++.++|.++...|++++|++++++++
T Consensus 99 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~----~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 99 LPEDPLAASANAYEVATVALHFGDLAGARQE----YEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHTCHHHHHHH----HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHHHHHHHhCCHHHHHHH----HHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 33 2 2 7789999999999999999999 888883322122222 678999999999999999999999999
Q ss_pred hcc
Q 003035 776 DIK 778 (855)
Q Consensus 776 ~~~ 778 (855)
++.
T Consensus 175 ~~~ 177 (203)
T 3gw4_A 175 DIF 177 (203)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 181
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.22 E-value=3.9e-11 Score=110.82 Aligned_cols=97 Identities=10% Similarity=0.006 Sum_probs=90.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCC
Q 003035 643 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTN 721 (855)
Q Consensus 643 ~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g 721 (855)
++.+|..+++.|++++|+..|+++++.+|+++++++.+|.++..+|++++|+..|+++++++|++ .+++.+|.++...|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 57889999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCchhHHHHHHHHHHHhcCCCCCCCHH
Q 003035 722 LDPESSTYVIQLLEEALRCPSDGLRKG 748 (855)
Q Consensus 722 ~~~~A~~~~~~lle~al~~~~~~~~p~ 748 (855)
++++|+.. |++++ ..+|+
T Consensus 100 ~~~~A~~~----~~~al-----~~~P~ 117 (121)
T 1hxi_A 100 NANAALAS----LRAWL-----LSQPQ 117 (121)
T ss_dssp HHHHHHHH----HHHHH-----C----
T ss_pred CHHHHHHH----HHHHH-----HhCcC
Confidence 99999999 99999 76664
No 182
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.22 E-value=4.5e-12 Score=139.30 Aligned_cols=151 Identities=12% Similarity=0.017 Sum_probs=93.1
Q ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHHHH
Q 003035 671 SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQA 750 (855)
Q Consensus 671 p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~~a 750 (855)
+.....++.+|..++..|++++|+..|++++.+.|++.. +...+++.++... +. ..+
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~----l~------------~~~ 232 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALA----VK------------NPC 232 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHH----HH------------THH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHH----HH------------HHH
Confidence 445677888999999999999999999999999887631 1122233333332 21 147
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh-----c
Q 003035 751 LNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE-----Y 823 (855)
Q Consensus 751 ~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~-----~ 823 (855)
++++|.+|..+|++++|+.+|+++++++ +..+++++|.+|..+|++++|+..|+++++++|+++.++..++. .
T Consensus 233 ~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~ 312 (338)
T 2if4_A 233 HLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEK 312 (338)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999998 89999999999999999999999999999999999999998887 5
Q ss_pred CCHHHHHHHHHHHHhcCCCCc
Q 003035 824 SDREMAKNDLNMATQLDPLRT 844 (855)
Q Consensus 824 g~~eeA~~~~~kAl~l~P~~~ 844 (855)
+..++++..|.+++..+|++.
T Consensus 313 ~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 313 ALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHhhCCCCCCC
Confidence 778889999999999999875
No 183
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.21 E-value=1.4e-10 Score=105.09 Aligned_cols=118 Identities=20% Similarity=0.252 Sum_probs=107.3
Q ss_pred CCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHH
Q 003035 636 DPGK-SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLK 713 (855)
Q Consensus 636 ~p~~-~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~l 713 (855)
+|.. ...++.+|..+...|++++|++.|+++++.+|++..+++.+|.++...|++++|+..++++++..|++ .+++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 83 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 83 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 4555 67889999999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred HHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcC
Q 003035 714 AYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECG 762 (855)
Q Consensus 714 g~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g 762 (855)
|.++...|++++|+.. +++++ ...|+ .++.++|.++...|
T Consensus 84 a~~~~~~~~~~~A~~~----~~~~~-----~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEY----YQKAL-----ELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHTTCHHHHHHH----HHHHH-----HHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCHHHHHHH----HHHHH-----HhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999999999 99999 66676 88888998887654
No 184
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.21 E-value=5.2e-11 Score=114.57 Aligned_cols=100 Identities=16% Similarity=0.131 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------cHH-----HHHHHHHHHHHCCCHHHHHHHHHHHHhc----
Q 003035 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS-------EHE-----RLVYEGWILYDTGHREEALSRAEKSISI---- 703 (855)
Q Consensus 640 ~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~-------~~~-----~~~~lg~~~~~~g~~~eAl~~~~kal~~---- 703 (855)
+..++..|..+...|++++|+..|+++++++|+ +.. +|.++|.++..+|++++|+..|+++|++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 345678899999999999999999999999999 544 9999999999999999999999999999
Q ss_pred ---cCCh-HHH----HHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH
Q 003035 704 ---ERTF-EAF----FLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG 748 (855)
Q Consensus 704 ---~p~~-~a~----~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~ 748 (855)
+|++ .+| +++|.++..+|++++|+.. |++++ .+.|+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~----y~kAl-----el~p~ 134 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPE----FKKVV-----EMIEE 134 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHH----HHHHH-----HHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHH----HHHHH-----hcCCC
Confidence 9999 999 9999999999999999999 99999 77776
No 185
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.20 E-value=7.5e-11 Score=108.94 Aligned_cols=96 Identities=9% Similarity=-0.027 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh----
Q 003035 749 QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE---- 822 (855)
Q Consensus 749 ~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~---- 822 (855)
..++.+|..+...|++++|+..|+++++++ ++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 457889999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCc
Q 003035 823 YSDREMAKNDLNMATQLDPLRT 844 (855)
Q Consensus 823 ~g~~eeA~~~~~kAl~l~P~~~ 844 (855)
.|++++|+..|+++++++|++.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 8999999999999999999864
No 186
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.19 E-value=3.7e-11 Score=106.38 Aligned_cols=81 Identities=32% Similarity=0.445 Sum_probs=66.3
Q ss_pred EEEEE-cCeEEEeeehhhhcCCHHHHHhhcC--CCccCCCCeeEecCCCCCHHHHHHHHHHhc-----c---CCCCC--C
Q 003035 220 VTFCV-RDKEISFVRNKIASLSSPFKAMLYG--GFVESKRKTIDFSHDGVSVEGLRAVEVYTR-----T---SRVDL--F 286 (855)
Q Consensus 220 V~f~v-~~~~~~aHr~vLaa~S~~F~~mf~~--~~~E~~~~~I~l~~~~is~~~~~~ll~y~Y-----T---g~l~~--~ 286 (855)
|+++. +|++|.+||.+ |+.|++|++||.+ ++.|+....|.| ++|++.+++.+++|+| + +.++. +
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l--~~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i 80 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNF--REIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPI 80 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEEC--TTSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCC
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceEC--CCCCHHHHHHHHHHHHHhcccCCCcCCCCcCcC
Confidence 66665 79999999999 9999999999987 788888889999 9999999999999999 5 55553 7
Q ss_pred CHHHHHHHHHHhchhCh
Q 003035 287 CPGIVLELLSFANRFCC 303 (855)
Q Consensus 287 ~~~~~~~ll~~A~~~~~ 303 (855)
+.+++++|+.+||.+++
T Consensus 81 ~~~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 81 APEIALELLMAANFLDC 97 (97)
T ss_dssp CGGGHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHhhhCC
Confidence 89999999999999874
No 187
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.19 E-value=2.2e-11 Score=139.42 Aligned_cols=130 Identities=6% Similarity=-0.018 Sum_probs=119.7
Q ss_pred HHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---------------HHHHHHHHHHHHHCCCHHHHHHH
Q 003035 632 MLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---------------HERLVYEGWILYDTGHREEALSR 696 (855)
Q Consensus 632 ~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~eAl~~ 696 (855)
.++..|..+..+..+|..++++|++++|+..|+++++++|++ ..+++++|.++..+|++++|+..
T Consensus 260 ~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~ 339 (457)
T 1kt0_A 260 DTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVEC 339 (457)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 344557778889999999999999999999999999999998 68999999999999999999999
Q ss_pred HHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHH
Q 003035 697 AEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENC 770 (855)
Q Consensus 697 ~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~ 770 (855)
|+++++++|++ .+++++|.+|..+|++++|+.. |++++ .++|+ .++.++|.++...|++++|...
T Consensus 340 ~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~----~~~al-----~l~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 340 CDKALGLDSANEKGLYRRGEAQLLMNEFESAKGD----FEKVL-----EVNPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHH----HHHHH-----TTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHH----HHHHH-----HhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999999999999999 99999 88888 8999999999999999888754
No 188
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.19 E-value=2.1e-10 Score=103.89 Aligned_cols=116 Identities=24% Similarity=0.342 Sum_probs=84.6
Q ss_pred CCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCH
Q 003035 670 SSSE-HERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK 747 (855)
Q Consensus 670 ~p~~-~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p 747 (855)
+|.. ...++.+|.++...|++++|+..|+++++..|++ .+++.+|.++...|++++|+.. +++++ ...|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~----~~~~~-----~~~~ 74 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY----YQKAL-----ELDP 74 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH----HHHHH-----HHCT
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHH----HHHHH-----HhCC
Confidence 4544 6778888888888888888888888888888877 7777788888888888887777 77777 4444
Q ss_pred H--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcC
Q 003035 748 G--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKN 794 (855)
Q Consensus 748 ~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g 794 (855)
. .++.++|.++...|++++|+..|+++++++ ++.++..+|.++..+|
T Consensus 75 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 75 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 4 666777777777777777777777777766 6667777776665543
No 189
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.18 E-value=2.9e-10 Score=101.95 Aligned_cols=110 Identities=16% Similarity=0.106 Sum_probs=102.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHH
Q 003035 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILA 718 (855)
Q Consensus 640 ~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~ 718 (855)
+..++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++.+|++ .+++.+|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHH
Q 003035 719 DTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIY 758 (855)
Q Consensus 719 ~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y 758 (855)
..|++++|... +++++ ...|+ .++..++.+.
T Consensus 84 ~~~~~~~A~~~----~~~~~-----~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 84 FLNRFEEAKRT----YEEGL-----KHEANNPQLKEGLQNME 116 (118)
T ss_dssp HTTCHHHHHHH----HHHHH-----TTCTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHH----HHHHH-----HcCCCCHHHHHHHHHhh
Confidence 99999999999 99999 77777 7777777664
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.17 E-value=1.3e-10 Score=112.41 Aligned_cols=96 Identities=18% Similarity=0.257 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------c--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003035 749 QALNNLGSIYVECGKLDQAENCYINALDI------------------K--HTRAHQGLARVYYLKNELKAAYDEMTKLLE 808 (855)
Q Consensus 749 ~a~~~LG~~y~~~g~~~~A~~~~~kAL~~------------------~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~ 808 (855)
..+..+|..+...|++++|+..|++++++ + +..+++++|.++..+|++++|+..++++++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 78999999999999999999999999998 5 668999999999999999999999999999
Q ss_pred HccCCHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCCc
Q 003035 809 KAQYSASAFEKRSE----YSDREMAKNDLNMATQLDPLRT 844 (855)
Q Consensus 809 ~~p~~~~a~~~lg~----~g~~eeA~~~~~kAl~l~P~~~ 844 (855)
++|+++.+|+.+|. .|++++|+.+|+++++++|++.
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 99999999999999 9999999999999999999986
No 191
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.16 E-value=1.8e-10 Score=107.40 Aligned_cols=102 Identities=18% Similarity=0.105 Sum_probs=81.4
Q ss_pred hcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCC
Q 003035 668 NHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR 746 (855)
Q Consensus 668 ~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~ 746 (855)
..+|.++..++.+|.+++..|++++|+..|+++++.+|++ .+++.+|.++...|++++|+.. +++++ .+.
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~al-----~~~ 73 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALAD----CRRAL-----ELD 73 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH----HHHHH-----HHC
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHH----HHHHH-----HhC
Confidence 3567788888888999889999999999888888888888 8888888888888888888888 88888 666
Q ss_pred HH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 003035 747 KG--QALNNLGSIYVECGKLDQAENCYINALDIK 778 (855)
Q Consensus 747 p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~ 778 (855)
|+ .++.++|.++...|++++|+..|++++++.
T Consensus 74 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 74 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHC
Confidence 66 777777777777777777777777777765
No 192
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.13 E-value=1.3e-10 Score=112.55 Aligned_cols=114 Identities=14% Similarity=0.001 Sum_probs=102.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 003035 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNH------------------SSSEHERLVYEGWILYDTGHREEALSRAEKSI 701 (855)
Q Consensus 640 ~~~~~~~a~~l~~~g~~~~A~~~l~~al~~------------------~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal 701 (855)
+..+...|..+++.|++++|+..|++++.+ +|....+++++|.++..+|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345678899999999999999999999999 77788999999999999999999999999999
Q ss_pred hccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH---HHHHHHHHHHHHcC
Q 003035 702 SIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG---QALNNLGSIYVECG 762 (855)
Q Consensus 702 ~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~---~a~~~LG~~y~~~g 762 (855)
+++|++ .+++.+|.+|...|++++|+.. |++++ .++|+ .+...++.+....+
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~----~~~al-----~l~p~~~~~~~~~l~~~~~~~~ 146 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEED----LKLLL-----RNHPAAASVVAREMKIVTERRA 146 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHH----HHHHH-----HHCGGGHHHHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHH----HHHHH-----hcCCCCHHHHHHHHHHHHHHHH
Confidence 999999 9999999999999999999999 99999 88887 34666666655443
No 193
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.13 E-value=6.2e-12 Score=144.84 Aligned_cols=119 Identities=12% Similarity=0.049 Sum_probs=81.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCC
Q 003035 645 RQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLD 723 (855)
Q Consensus 645 ~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~ 723 (855)
.+|..+.++|++++|++.|+++++.+|+++.+++++|.++..+|++++|+..|+++++++|++ .+++++|.+|..+|++
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 345556667777777777777777777777777777777777777777777777777777777 7777777777777777
Q ss_pred chhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHH--HHHcCCHHHHHHHHH
Q 003035 724 PESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSI--YVECGKLDQAENCYI 772 (855)
Q Consensus 724 ~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~--y~~~g~~~~A~~~~~ 772 (855)
++|+.. |++++ .+.|+ .++.++|.+ +...|++++|++.++
T Consensus 91 ~eA~~~----~~~al-----~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRD----YETVV-----KVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHH----HHHHH-----HHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHH----HHHHH-----HhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777 77777 55555 566666666 666677777777777
No 194
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.13 E-value=1.6e-10 Score=102.85 Aligned_cols=100 Identities=15% Similarity=0.077 Sum_probs=96.4
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC--h-HHHHH
Q 003035 636 DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERT--F-EAFFL 712 (855)
Q Consensus 636 ~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~--~-~a~~~ 712 (855)
+|.++..++.+|.++...|++++|+..|+++++.+|++..+++.+|.++..+|++++|+..|+++++..|+ + .+++.
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 57888889999999999999999999999999999999999999999999999999999999999999999 8 99999
Q ss_pred HHHHHHHC-CCCchhHHHHHHHHHHHhc
Q 003035 713 KAYILADT-NLDPESSTYVIQLLEEALR 739 (855)
Q Consensus 713 lg~~~~~~-g~~~~A~~~~~~lle~al~ 739 (855)
+|.++... |++++|++. ++++++
T Consensus 82 l~~~~~~~~~~~~~A~~~----~~~~~~ 105 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIA----EARAKL 105 (112)
T ss_dssp HHHHHTTCSSCSHHHHHH----HHHHGG
T ss_pred HHHHHHHHhCCHHHHHHH----HHHHhh
Confidence 99999999 999999999 999993
No 195
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.13 E-value=4.7e-10 Score=100.53 Aligned_cols=103 Identities=16% Similarity=0.233 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh----
Q 003035 749 QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE---- 822 (855)
Q Consensus 749 ~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~---- 822 (855)
..+..+|.++...|++++|+..|+++++.. ++.++..+|.++..+|++++|+..++++++.+|+++.++..+|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 678899999999999999999999999998 89999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcccchhhh
Q 003035 823 YSDREMAKNDLNMATQLDPLRTYPYRYRA 851 (855)
Q Consensus 823 ~g~~eeA~~~~~kAl~l~P~~~~~~~~~a 851 (855)
.|++++|+..++++++++|++...+...+
T Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 113 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113 (118)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 99999999999999999999987766554
No 196
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.13 E-value=2.8e-10 Score=127.98 Aligned_cols=214 Identities=11% Similarity=0.003 Sum_probs=163.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhhccChhhhHHHHhhhcccccccchHHHHHH
Q 003035 552 ELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQ 631 (855)
Q Consensus 552 ~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~~~~~a~~~~~~~~~~~~~~d~~al~~~~~ 631 (855)
...|.-+...|+|++|++.|.+++..+|+............. ....
T Consensus 8 l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~-------------------------------~~~~--- 53 (434)
T 4b4t_Q 8 LEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDK-------------------------------RRNE--- 53 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSH-------------------------------HHHH---
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHH-------------------------------Hhhh---
Confidence 344667778899999999999999988875432221111000 0000
Q ss_pred HHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH------HHHHHHHHHHHHCCCHHHHHHHHHHHHhccC
Q 003035 632 MLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH------ERLVYEGWILYDTGHREEALSRAEKSISIER 705 (855)
Q Consensus 632 ~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~------~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p 705 (855)
...++..+|.++..+|++++|++.+.++++..+... .+...+|.++...|++++|+..+++++...+
T Consensus 54 -------~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 126 (434)
T 4b4t_Q 54 -------QETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAK 126 (434)
T ss_dssp -------HHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 112346789999999999999999999998765432 3456788999999999999999999988643
Q ss_pred C------h-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCC-CCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003035 706 T------F-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCP-SDGLRKG--QALNNLGSIYVECGKLDQAENCYINAL 775 (855)
Q Consensus 706 ~------~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~-~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL 775 (855)
. . .++..+|.+|...|++.+|... +++++... ...-.+. .++.++|.+|...|++++|...|++++
T Consensus 127 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 127 REKRVFLKHSLSIKLATLHYQKKQYKDSLAL----INDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp HSSCCSSHHHHHHHHHHHHHHHTCHHHHHHH----HHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhCccHHHHHHHHHHHHHHHHccChHHHHHH----HHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 2 2 7888999999999999999999 77766321 1111233 899999999999999999999999999
Q ss_pred hcc----c-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 003035 776 DIK----H-----TRAHQGLARVYYLKNELKAAYDEMTKLLEKA 810 (855)
Q Consensus 776 ~~~----~-----~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~ 810 (855)
.+. + ...+..+|.++...|++.+|..+|.++++..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 203 TAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 875 2 3567788999999999999999999999763
No 197
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.12 E-value=2.4e-10 Score=108.35 Aligned_cols=135 Identities=15% Similarity=0.008 Sum_probs=114.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH------HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh------
Q 003035 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH------ERLVYEGWILYDTGHREEALSRAEKSISIERTF------ 707 (855)
Q Consensus 640 ~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~------~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~------ 707 (855)
..++..+|.++...|++++|+..++++++..+... .++..+|.++...|++++|+..+++++++.+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45678899999999999999999999998865432 478899999999999999999999999875431
Q ss_pred -HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 003035 708 -EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG---QALNNLGSIYVECGKLDQAENCYINALDIK 778 (855)
Q Consensus 708 -~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~---~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~ 778 (855)
.++..+|.++...|++++|+.. ++++++.......+. .++.++|.++...|++++|++.+++++++.
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~----~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDY----HLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHH----HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHH----HHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 6788999999999999999999 888884322222222 789999999999999999999999998764
No 198
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.12 E-value=2e-12 Score=148.89 Aligned_cols=134 Identities=12% Similarity=0.064 Sum_probs=117.6
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--H
Q 003035 673 EHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--Q 749 (855)
Q Consensus 673 ~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~ 749 (855)
.++.++.+|.++..+|++++|+..|+++++++|++ .+++++|.+|..+|++++|+.. +++++ .++|+ .
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~----~~~al-----~l~p~~~~ 75 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGD----ATRAI-----ELDKKYIK 75 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH----HHHHH-----HSCTTCHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHH----HHHHH-----HhCCCCHH
Confidence 45566778999999999999999999999999999 9999999999999999999999 99999 78887 8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHHHccCCH
Q 003035 750 ALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARV--YYLKNELKAAYDEMT-----------KLLEKAQYSA 814 (855)
Q Consensus 750 a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~--~~~~g~~~~A~~~~~-----------kal~~~p~~~ 814 (855)
+++++|.+|..+|++++|++.|+++++++ +..++.++|.+ +..+|++++|++.++ ++++++|++.
T Consensus 76 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~ 155 (477)
T 1wao_1 76 GYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYS 155 (477)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccc
Confidence 99999999999999999999999999998 77888888888 888899999999999 8888877653
Q ss_pred H
Q 003035 815 S 815 (855)
Q Consensus 815 ~ 815 (855)
.
T Consensus 156 ~ 156 (477)
T 1wao_1 156 G 156 (477)
T ss_dssp S
T ss_pred c
Confidence 3
No 199
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=3.4e-10 Score=106.45 Aligned_cols=115 Identities=11% Similarity=0.009 Sum_probs=105.8
Q ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHH
Q 003035 635 NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAF 710 (855)
Q Consensus 635 ~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~---~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~ 710 (855)
.+|.+...++.+|..+...|++++|+..|+++++.+|++ ..+++.+|.++...|++++|+..++++++.+|++ .++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 457888999999999999999999999999999999998 8999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHH
Q 003035 711 FLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIY 758 (855)
Q Consensus 711 ~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y 758 (855)
+.+|.++...|++++|+.. |++++ ...|+ .++..++.+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~----~~~al-----~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLD----LQRCV-----SLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHH----HHHHH-----HHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHH----HHHHH-----HcCCCcHHHHHHHHHHH
Confidence 9999999999999999999 99999 66665 6666666554
No 200
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.07 E-value=4.4e-10 Score=99.90 Aligned_cols=96 Identities=8% Similarity=0.103 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccC--CHHHHHHHhh--
Q 003035 749 QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQY--SASAFEKRSE-- 822 (855)
Q Consensus 749 ~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~--~~~a~~~lg~-- 822 (855)
.++..+|.++...|++++|+..|++++++. +..+++++|.++..+|++++|++.++++++.+|+ ++.++..+|.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 678899999999999999999999999998 8999999999999999999999999999999999 9999999999
Q ss_pred --c-CCHHHHHHHHHHHHhcCCCCc
Q 003035 823 --Y-SDREMAKNDLNMATQLDPLRT 844 (855)
Q Consensus 823 --~-g~~eeA~~~~~kAl~l~P~~~ 844 (855)
. |++++|++++++++..+|.++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8 999999999999999999864
No 201
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=99.06 E-value=4.7e-10 Score=106.34 Aligned_cols=92 Identities=15% Similarity=0.134 Sum_probs=83.3
Q ss_pred EEEEE-cCeEEEeeehhhhcCCHHHHHhhcCCCccCCCCeeEecCCCCCHHHHHHHHHHhccCC----------------
Q 003035 220 VTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSR---------------- 282 (855)
Q Consensus 220 V~f~v-~~~~~~aHr~vLaa~S~~F~~mf~~~~~E~~~~~I~l~~~~is~~~~~~ll~y~YTg~---------------- 282 (855)
|+++. +|+.|.+||.+ |..|.+|+.||.+.- ...|.| ++|+..+++.+++|+|+..
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~----~~~Ipl--~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~ 76 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG----MDPVPL--PNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT 76 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC----CSSEEC--TTCCHHHHHHHHHHHHHHTTCC-------------
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcC----CCceec--CCcCHHHHHHHHHHHHHhccCCCccccccccccch
Confidence 77777 88999999998 899999999997531 457999 9999999999999999776
Q ss_pred ----------CCCCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhcC
Q 003035 283 ----------VDLFCPGIVLELLSFANRFCCEEMKSACDAHLASLVG 319 (855)
Q Consensus 283 ----------l~~~~~~~~~~ll~~A~~~~~~~Lk~~C~~~l~~~l~ 319 (855)
+. ++.+++.+|+.+||.+++..|.+.|+++++..+.
T Consensus 77 ~~i~~wD~~F~~-vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ik 122 (141)
T 1fs1_B 77 DDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVTCKTVANMIK 122 (141)
T ss_dssp ----HHHHHHTC-SCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHh-CCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc
Confidence 55 8899999999999999999999999999999997
No 202
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.06 E-value=1.5e-10 Score=105.75 Aligned_cols=93 Identities=14% Similarity=0.003 Sum_probs=66.9
Q ss_pred cCCHHHHHHHHHHHHhc---c--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh----cCCHHHHHH
Q 003035 761 CGKLDQAENCYINALDI---K--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKN 831 (855)
Q Consensus 761 ~g~~~~A~~~~~kAL~~---~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~----~g~~eeA~~ 831 (855)
+|++++|+.+|++++++ + ++.+++++|.++..+|++++|+..|+++++++|+++.++..+|. .|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 56777777777777777 3 66777777777777777777777777777777777777777777 777777777
Q ss_pred HHHHHHhcCCCCcccchhhhcc
Q 003035 832 DLNMATQLDPLRTYPYRYRAAE 853 (855)
Q Consensus 832 ~~~kAl~l~P~~~~~~~~~a~~ 853 (855)
.++++++++|++....+|+.|+
T Consensus 83 ~~~~al~~~p~~~~~~~~~~ai 104 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQSYKQAI 104 (117)
T ss_dssp HHHHHHHHHCCCHHHHHTHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHH
Confidence 7777777777777666665554
No 203
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1.6e-09 Score=101.79 Aligned_cols=116 Identities=16% Similarity=0.133 Sum_probs=77.5
Q ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHHH
Q 003035 670 SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQ 749 (855)
Q Consensus 670 ~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~~ 749 (855)
+|.+...++.+|..+...|++++|+..|+++++.+|++. . ...
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~--------------------~-----------------~~~ 66 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQ--------------------D-----------------QAV 66 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHH--------------------H-----------------HHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccch--------------------H-----------------HHH
Confidence 345555555556666666666666655555555555420 0 014
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh
Q 003035 750 ALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE 822 (855)
Q Consensus 750 a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~ 822 (855)
++.++|.+|...|++++|+..|+++++++ ++.+++++|.++..+|++++|+..|+++++++|++..++..++.
T Consensus 67 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (148)
T 2dba_A 67 LHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 56667777777777777777777777776 67777788888888888888888888888888887777766554
No 204
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.05 E-value=6.7e-10 Score=101.55 Aligned_cols=117 Identities=14% Similarity=0.105 Sum_probs=75.6
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCC-CCC-H--
Q 003035 673 EHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSD-GLR-K-- 747 (855)
Q Consensus 673 ~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~-~~~-p-- 747 (855)
.+..++.+|.++...|++++|+..|+++++..|++ .+++.+|.++...|++++|+.. ++++++...+ ... +
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~----~~~~~~~~~~~~~~~~~~ 78 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCREL----CEKAIEVGRENREDYRQI 78 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH----HHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHH----HHHHHhhccccchhHHHH
Confidence 34556666666666666666666666666666665 6666666666666666666666 6666521100 000 0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHc
Q 003035 748 GQALNNLGSIYVECGKLDQAENCYINALDIK-HTRAHQGLARVYYLK 793 (855)
Q Consensus 748 ~~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~-~~~a~~~lg~~~~~~ 793 (855)
..++.++|.++...|++++|+++|++++++. ++.+...++.+....
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 1567788888888888888888888888877 777777777665544
No 205
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.04 E-value=1.1e-10 Score=128.18 Aligned_cols=154 Identities=14% Similarity=0.052 Sum_probs=83.9
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCChHHHHHHHHH
Q 003035 637 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYI 716 (855)
Q Consensus 637 p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~~a~~~lg~~ 716 (855)
+..+..++.+|..+++.|++++|+..|+++++..|++.. +...|+++++...+. ..+++++|.+
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l~--------~~~~~nla~~ 239 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAVK--------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHHH--------THHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHHH--------HHHHHHHHHH
Confidence 334567889999999999999999999999999998762 223344444443321 1467777777
Q ss_pred HHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHH-
Q 003035 717 LADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYY- 791 (855)
Q Consensus 717 ~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~- 791 (855)
|..+|++++|+.. +++++ .++|+ .+|+++|.+|..+|++++|+.+|+++++++ +..++..++.+..
T Consensus 240 ~~~~g~~~~A~~~----~~~al-----~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 240 LIKLKRYDEAIGH----CNIVL-----TEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHTTTCCHHHHHH----HHHHH-----HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHcCCHHHHHHH----HHHHH-----HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 7777777777777 77777 66665 677777777777777777777777777776 6677777777743
Q ss_pred HcCCHHHHHHHHHHHHHHccCCHH
Q 003035 792 LKNELKAAYDEMTKLLEKAQYSAS 815 (855)
Q Consensus 792 ~~g~~~~A~~~~~kal~~~p~~~~ 815 (855)
..+..+++...|.+++...|+++.
T Consensus 311 ~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCC
Confidence 345667777788888888777653
No 206
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.04 E-value=1.5e-09 Score=99.92 Aligned_cols=102 Identities=17% Similarity=0.162 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCC---HHHHHHHh
Q 003035 750 ALNNLGSIYVECGKLDQAENCYINALDIK--HT---RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS---ASAFEKRS 821 (855)
Q Consensus 750 a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~---~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~---~~a~~~lg 821 (855)
+++.+|.++...|++++|++.|+++++.. ++ .+++.+|.++..+|++++|+..|+++++.+|++ +.+++.+|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 46789999999999999999999999987 55 799999999999999999999999999999999 89999999
Q ss_pred h----cCCHHHHHHHHHHHHhcCCCCcccchhhh
Q 003035 822 E----YSDREMAKNDLNMATQLDPLRTYPYRYRA 851 (855)
Q Consensus 822 ~----~g~~eeA~~~~~kAl~l~P~~~~~~~~~a 851 (855)
. .|++++|+..|+++++.+|++.....-++
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 9 99999999999999999999876655443
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.03 E-value=2.3e-10 Score=109.80 Aligned_cols=65 Identities=20% Similarity=0.101 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCc----------hhHHHHHHHHHHHhcCCCCCCCHH--HHHHHH
Q 003035 688 GHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDP----------ESSTYVIQLLEEALRCPSDGLRKG--QALNNL 754 (855)
Q Consensus 688 g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~----------~A~~~~~~lle~al~~~~~~~~p~--~a~~~L 754 (855)
+++++|+..++++++++|++ ++|+++|.++...++++ +|+.. |++|| .++|+ ++|+++
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~----le~AL-----~ldP~~~~A~~~L 86 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITK----FEEAL-----LIDPKKDEAVWCI 86 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH----HHHHH-----HHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHH----HHHHH-----HhCcCcHHHHHHH
Confidence 34455555555555555555 55555555555544444 44444 55555 44444 455555
Q ss_pred HHHHHHc
Q 003035 755 GSIYVEC 761 (855)
Q Consensus 755 G~~y~~~ 761 (855)
|.+|..+
T Consensus 87 G~ay~~l 93 (158)
T 1zu2_A 87 GNAYTSF 93 (158)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555444
No 208
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.03 E-value=1.9e-09 Score=99.09 Aligned_cols=98 Identities=12% Similarity=0.025 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh----HHHHHHH
Q 003035 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH---ERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFFLKA 714 (855)
Q Consensus 642 ~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~---~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~----~a~~~lg 714 (855)
.++.+|..++..|++++|+..|+++++.+|+++ .+++.+|.++..+|++++|+..|+++++.+|++ .+++.+|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 367889999999999999999999999999988 899999999999999999999999999999986 6799999
Q ss_pred HHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH
Q 003035 715 YILADTNLDPESSTYVIQLLEEALRCPSDGLRKG 748 (855)
Q Consensus 715 ~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~ 748 (855)
.++...|++++|+.. |++++ ...|+
T Consensus 84 ~~~~~~g~~~~A~~~----~~~~~-----~~~p~ 108 (129)
T 2xev_A 84 LSQYGEGKNTEAQQT----LQQVA-----TQYPG 108 (129)
T ss_dssp HHHHHTTCHHHHHHH----HHHHH-----HHSTT
T ss_pred HHHHHcCCHHHHHHH----HHHHH-----HHCCC
Confidence 999999999999999 99999 66665
No 209
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.02 E-value=6e-10 Score=101.89 Aligned_cols=114 Identities=9% Similarity=0.088 Sum_probs=100.9
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC--------hHHH
Q 003035 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERT--------FEAF 710 (855)
Q Consensus 639 ~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~--------~~a~ 710 (855)
.+..++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++..|+ ..++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 35678889999999999999999999999999999999999999999999999999999999999764 3678
Q ss_pred HHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH-HHHHHHHHHHHHc
Q 003035 711 FLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG-QALNNLGSIYVEC 761 (855)
Q Consensus 711 ~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~-~a~~~LG~~y~~~ 761 (855)
+.+|.++...|++++|+.. |++++ ...|+ ..+..++.+....
T Consensus 83 ~~la~~~~~~~~~~~A~~~----~~~~~-----~~~~~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHF----YNKSL-----AEHRTPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHH----HHHHH-----HHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHH----HHHHH-----HhCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999 99999 55554 6666777666544
No 210
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.01 E-value=8.7e-10 Score=122.56 Aligned_cols=119 Identities=8% Similarity=-0.019 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc
Q 003035 641 FLRFRQSLLLLRLNCQKAAMRCLRLARN----------------HSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE 704 (855)
Q Consensus 641 ~~~~~~a~~l~~~g~~~~A~~~l~~al~----------------~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~ 704 (855)
..+..+|..+++.|++++|+..|+++++ .+|....++.++|.++..+|++++|+..++++++++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 3567788899999999999999999998 455555555566666666666666666666666665
Q ss_pred CCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHH
Q 003035 705 RTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAE 768 (855)
Q Consensus 705 p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~ 768 (855)
|++ .+++.+|.+|..+|++++|+.. |++++ .+.|+ .++..++.++...++++++.
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~----l~~Al-----~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALAD----LKKAQ-----EIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHH----HHHHH-----HHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHH----HHHHH-----HhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 555 5555555555555555555555 55555 44444 45555555555555554443
No 211
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.00 E-value=1.9e-09 Score=98.37 Aligned_cols=91 Identities=19% Similarity=0.245 Sum_probs=81.7
Q ss_pred HCCCCchhHHHHHHHHHHHhcCCCCCC---CHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHH
Q 003035 719 DTNLDPESSTYVIQLLEEALRCPSDGL---RKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYY 791 (855)
Q Consensus 719 ~~g~~~~A~~~~~~lle~al~~~~~~~---~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~ 791 (855)
.+|++++|+.. |++++ .. +|+ .++.++|.+|...|++++|+.+|+++++++ ++.+++++|.++.
T Consensus 2 ~~g~~~~A~~~----~~~al-----~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 72 (117)
T 3k9i_A 2 VLGLEAQAVPY----YEKAI-----ASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLY 72 (117)
T ss_dssp -----CCCHHH----HHHHH-----SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHH----HHHHH-----HcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 46899999999 99999 77 577 999999999999999999999999999998 8999999999999
Q ss_pred HcCCHHHHHHHHHHHHHHccCCHHHHH
Q 003035 792 LKNELKAAYDEMTKLLEKAQYSASAFE 818 (855)
Q Consensus 792 ~~g~~~~A~~~~~kal~~~p~~~~a~~ 818 (855)
.+|++++|+..++++++..|+++....
T Consensus 73 ~~g~~~~A~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 73 NLGRYEQGVELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHTCHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999999999999999988754
No 212
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.00 E-value=1.8e-09 Score=119.98 Aligned_cols=132 Identities=16% Similarity=0.147 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHH
Q 003035 674 HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QAL 751 (855)
Q Consensus 674 ~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~ 751 (855)
...+..+|..++..|++++|+..|++++++.|... +... .++.. ...|. .+|
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~-----------------~~~~----~~~~~-----~~~~~~~~~~ 276 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-----------------AAAE----DADGA-----KLQPVALSCV 276 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-----------------HHSC----HHHHG-----GGHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc-----------------cccC----hHHHH-----HHHHHHHHHH
Confidence 45688899999999999999999999999755321 1112 34444 44555 788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh----cCC
Q 003035 752 NNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSD 825 (855)
Q Consensus 752 ~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~----~g~ 825 (855)
+++|.+|..+|++++|+++|+++++++ ++.+++++|.+|..+|++++|+..|+++++++|++..++..++. .++
T Consensus 277 ~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~ 356 (370)
T 1ihg_A 277 LNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA 356 (370)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999888 88889999999999999999999999999999998888888887 555
Q ss_pred HHHHHH
Q 003035 826 REMAKN 831 (855)
Q Consensus 826 ~eeA~~ 831 (855)
.+++.+
T Consensus 357 ~~~a~k 362 (370)
T 1ihg_A 357 QKDKEK 362 (370)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 213
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=98.95 E-value=1.4e-10 Score=112.53 Aligned_cols=110 Identities=12% Similarity=0.096 Sum_probs=64.5
Q ss_pred EEEEE-cCeEEEeeehhhhcCCHHHHHhhcCCCccCCCCeeEecCCCCCHHHHHHHHHHhccCC----------------
Q 003035 220 VTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSR---------------- 282 (855)
Q Consensus 220 V~f~v-~~~~~~aHr~vLaa~S~~F~~mf~~~~~E~~~~~I~l~~~~is~~~~~~ll~y~YTg~---------------- 282 (855)
|+++. +|+.|.+||.+ |..|++|+.||.++. ....|.| ++|+..+++.|++|+|+..
T Consensus 6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~---~~~~Ipl--~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~ 79 (160)
T 2p1m_A 6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDDC---VDNGVPL--PNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATS 79 (160)
T ss_dssp --CCC---------CHH-HHTCTTTC---------------CC--TTSCHHHHHHHHHC---------------------
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHccC---CCCceeC--CcCcHHHHHHHHHHHHHcccCCCcccccccccccc
Confidence 77776 89999999998 899999999998753 2347999 9999999999999999876
Q ss_pred -----------CCCCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhcC--ChhhHHHHHHHHHHhcc
Q 003035 283 -----------VDLFCPGIVLELLSFANRFCCEEMKSACDAHLASLVG--DIEDALILIDYGLEERA 336 (855)
Q Consensus 283 -----------l~~~~~~~~~~ll~~A~~~~~~~Lk~~C~~~l~~~l~--~~~n~~~~~~~A~~~~~ 336 (855)
+. ++.+++.+|+.+||.+++..|..+|++++...+. +++++..++.+...+..
T Consensus 80 ~~~i~~wD~~Fl~-vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~~f~I~nd~t~ 145 (160)
T 2p1m_A 80 DDDLKAWDADFMK-IDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTP 145 (160)
T ss_dssp ----------------------CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCCCCCH
T ss_pred cchhhHHHHHHHc-CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCH
Confidence 34 7888999999999999999999999999999994 38888877776554443
No 214
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.94 E-value=5.6e-10 Score=107.18 Aligned_cols=89 Identities=12% Similarity=0.113 Sum_probs=82.2
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHhccCCh-HHHHHHHHHHHH
Q 003035 651 LRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHR----------EEALSRAEKSISIERTF-EAFFLKAYILAD 719 (855)
Q Consensus 651 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~----------~eAl~~~~kal~~~p~~-~a~~~lg~~~~~ 719 (855)
-+.+++++|++.++++++++|+++++|+++|.++...+++ ++|+..|+++|+++|++ .+|+++|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3556799999999999999999999999999999999875 59999999999999999 999999999998
Q ss_pred CC-----------CCchhHHHHHHHHHHHhcCCCCCCCHH
Q 003035 720 TN-----------LDPESSTYVIQLLEEALRCPSDGLRKG 748 (855)
Q Consensus 720 ~g-----------~~~~A~~~~~~lle~al~~~~~~~~p~ 748 (855)
+| ++++|+.+ |++|+ .++|+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~----~~kAl-----~l~P~ 123 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQF----FQQAV-----DEQPD 123 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHH----HHHHH-----HHCTT
T ss_pred hcccCcchhhhhccHHHHHHH----HHHHH-----HhCCC
Confidence 75 89999999 99999 88886
No 215
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.93 E-value=8.9e-07 Score=102.03 Aligned_cols=169 Identities=12% Similarity=0.003 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHH
Q 003035 658 AAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEE 736 (855)
Q Consensus 658 ~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~ 736 (855)
.....|++++...|..+..|+..+..+...|+.++|...|++|+.. |.. ..++..+... +.++.... +.+
T Consensus 197 Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~----e~~~~~~~----l~~ 267 (493)
T 2uy1_A 197 RMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM----DEEAVYGD----LKR 267 (493)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT----TCTHHHHH----HHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc----chhHHHHH----HHH
Confidence 3455666677666766777766666666677777777777777776 666 4444333321 11111111 111
Q ss_pred HhcCCC----CCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcC-CHHHHHHHHHHH
Q 003035 737 ALRCPS----DGLRKG---QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKN-ELKAAYDEMTKL 806 (855)
Q Consensus 737 al~~~~----~~~~p~---~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g-~~~~A~~~~~ka 806 (855)
+..... ....+. .+|...+......|..+.|...|++| ... ...++...|.+-...+ +.+.|...|+.+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 110000 000011 45555566555566666677777666 322 3344444455444444 466677777777
Q ss_pred HHHccCCHHHHHHHhh----cCCHHHHHHHHHHH
Q 003035 807 LEKAQYSASAFEKRSE----YSDREMAKNDLNMA 836 (855)
Q Consensus 807 l~~~p~~~~a~~~lg~----~g~~eeA~~~~~kA 836 (855)
++..|+++..+...+. .|+.+.|+..|+++
T Consensus 347 l~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 347 LLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7666666655444333 45555555555544
No 216
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.82 E-value=1.9e-08 Score=86.14 Aligned_cols=84 Identities=13% Similarity=0.084 Sum_probs=79.2
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHH
Q 003035 638 GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYI 716 (855)
Q Consensus 638 ~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~ 716 (855)
.++..++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++ .++..+|.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHCC
Q 003035 717 LADTN 721 (855)
Q Consensus 717 ~~~~g 721 (855)
+...|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 87654
No 217
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.80 E-value=1.3e-08 Score=92.00 Aligned_cols=82 Identities=20% Similarity=0.190 Sum_probs=48.5
Q ss_pred hHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc
Q 003035 625 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE 704 (855)
Q Consensus 625 al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~ 704 (855)
++..+.++++.+|.++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|++++++.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 34455555555666666666666666666666666666666666666666666666666666666666666666665555
Q ss_pred CC
Q 003035 705 RT 706 (855)
Q Consensus 705 p~ 706 (855)
|+
T Consensus 84 ~~ 85 (115)
T 2kat_A 84 QS 85 (115)
T ss_dssp HH
T ss_pred cc
Confidence 53
No 218
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.79 E-value=2.1e-08 Score=89.21 Aligned_cols=90 Identities=9% Similarity=0.019 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-------HHHHH
Q 003035 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-------EAFFL 712 (855)
Q Consensus 640 ~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-------~a~~~ 712 (855)
+..++.+|..+...|++++|+..|+++++.+|+++.+++++|.++..+|++++|+..|+++++++|++ .+++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999984 67889
Q ss_pred HHHHHHHCCCCchhHHH
Q 003035 713 KAYILADTNLDPESSTY 729 (855)
Q Consensus 713 lg~~~~~~g~~~~A~~~ 729 (855)
+|.++...|+++.|+..
T Consensus 84 ~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHhHhhhHhH
Confidence 99999999999998877
No 219
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.78 E-value=1.8e-08 Score=89.28 Aligned_cols=88 Identities=11% Similarity=0.086 Sum_probs=75.2
Q ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh---HHHH
Q 003035 635 NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF---EAFF 711 (855)
Q Consensus 635 ~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~---~a~~ 711 (855)
.+|+++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..|++++++.|.. ....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~ 81 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence 4799999999999999999999999999999999999999999999999999999999999999999998765 4444
Q ss_pred HHHHHHHHCCC
Q 003035 712 LKAYILADTNL 722 (855)
Q Consensus 712 ~lg~~~~~~g~ 722 (855)
.+...+...+.
T Consensus 82 ~l~~~l~~~~~ 92 (100)
T 3ma5_A 82 ELQDAKLKAEG 92 (100)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHccc
Confidence 55555554443
No 220
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.78 E-value=2.8e-08 Score=89.82 Aligned_cols=81 Identities=12% Similarity=0.069 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHH
Q 003035 658 AAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEE 736 (855)
Q Consensus 658 ~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~ 736 (855)
+|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++ .+++.+|.++...|++++|+.. |++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~----~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQA----WES 78 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH----HHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHH----HHH
Confidence 57899999999999999999999999999999999999999999999999 9999999999999999999999 998
Q ss_pred HhcCCC
Q 003035 737 ALRCPS 742 (855)
Q Consensus 737 al~~~~ 742 (855)
+++...
T Consensus 79 al~~~~ 84 (115)
T 2kat_A 79 GLAAAQ 84 (115)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 886543
No 221
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.77 E-value=4.1e-08 Score=92.69 Aligned_cols=118 Identities=19% Similarity=0.163 Sum_probs=66.2
Q ss_pred CHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH----cCCH
Q 003035 689 HREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVE----CGKL 764 (855)
Q Consensus 689 ~~~eAl~~~~kal~~~p~~~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~~a~~~LG~~y~~----~g~~ 764 (855)
++++|+..|+++.+..... +. +|.+|...+..++|+.. |+++. +.....++++||.+|.. .+++
T Consensus 10 d~~~A~~~~~~aa~~g~~~-a~--lg~~y~~g~~~~~A~~~----~~~Aa-----~~g~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMF-GC--LSLVSNSQINKQKLFQY----LSKAC-----ELNSGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTT-HH--HHHHTCTTSCHHHHHHH----HHHHH-----HTTCHHHHHHHHHHHHHCSSSCCCH
T ss_pred CHHHHHHHHHHHHcCCCHh-hh--HHHHHHcCCCHHHHHHH----HHHHH-----cCCCHHHHHHHHHHHHcCCCCCccH
Confidence 3455555555555544222 22 55555555555555555 55555 33223566666666665 5566
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHccCCHHHHHHH
Q 003035 765 DQAENCYINALDIKHTRAHQGLARVYYL----KNELKAAYDEMTKLLEKAQYSASAFEKR 820 (855)
Q Consensus 765 ~~A~~~~~kAL~~~~~~a~~~lg~~~~~----~g~~~~A~~~~~kal~~~p~~~~a~~~l 820 (855)
++|+++|++|.+..++.+++++|.+|.. .+|+++|+++|+++.+. .++.+...|
T Consensus 78 ~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l 135 (138)
T 1klx_A 78 RKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGIL 135 (138)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHH
Confidence 6666666666665566666666666666 56666666666666655 344444443
No 222
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.75 E-value=6.1e-06 Score=95.04 Aligned_cols=196 Identities=10% Similarity=0.008 Sum_probs=145.9
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---
Q 003035 626 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS--- 702 (855)
Q Consensus 626 l~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~--- 702 (855)
..++.+++...|..+.+++..+..+.+.|+.+.|...|++|+.. |.+...+...+... ..+ +....+.++..
T Consensus 199 ~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~---~~~~~l~~~~~~~~ 273 (493)
T 2uy1_A 199 HFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEE---AVYGDLKRKYSMGE 273 (493)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCT---HHHHHHHHHTC---
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chh---HHHHHHHHHHHhhc
Confidence 35788899999999999999999999999999999999999999 99887776555441 111 11111222111
Q ss_pred -------ccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHH
Q 003035 703 -------IERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECG-KLDQAENCYIN 773 (855)
Q Consensus 703 -------~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~~a~~~LG~~y~~~g-~~~~A~~~~~k 773 (855)
..+.. ..|...+......+..+.|... |++| +.+. .. ...|...+.+....| +.+.|.+.|+.
T Consensus 274 ~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i----~~~A-~~~~--~~-~~v~i~~A~lE~~~~~d~~~ar~ife~ 345 (493)
T 2uy1_A 274 AESAEKVFSKELDLLRINHLNYVLKKRGLELFRKL----FIEL-GNEG--VG-PHVFIYCAFIEYYATGSRATPYNIFSS 345 (493)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHCHHHHHHH----HHHH-TTSC--CC-HHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred cchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHH----HHHh-hCCC--CC-hHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 01112 6677777777777788888888 9999 4332 11 156666676666666 69999999999
Q ss_pred HHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh----cCCHHHHHHHHHHHHh
Q 003035 774 ALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQ 838 (855)
Q Consensus 774 AL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~----~g~~eeA~~~~~kAl~ 838 (855)
+++.. ++..+..++......|+.+.|...|+++ +.....|..... .|+.+.+.+.++++++
T Consensus 346 al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 346 GLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99876 6777777888888899999999999987 345666666665 8999999999999885
No 223
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.74 E-value=6e-08 Score=91.56 Aligned_cols=120 Identities=13% Similarity=0.030 Sum_probs=104.7
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHH----CCCCchhHH
Q 003035 654 NCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILAD----TNLDPESST 728 (855)
Q Consensus 654 g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~----~g~~~~A~~ 728 (855)
+++++|+.+|+++.+.....+. +|.+|...+..++|+..|+++.+. .+ .+++++|.+|.. .+++++|+.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 4689999999999998754444 999999999999999999999987 45 999999999999 899999999
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcccHHHHHHHHH
Q 003035 729 YVIQLLEEALRCPSDGLRKGQALNNLGSIYVE----CGKLDQAENCYINALDIKHTRAHQGLAR 788 (855)
Q Consensus 729 ~~~~lle~al~~~~~~~~p~~a~~~LG~~y~~----~g~~~~A~~~~~kAL~~~~~~a~~~lg~ 788 (855)
. |+++. +.....++++||.+|.. .+++++|+.+|++|.+..++.+..+++.
T Consensus 83 ~----~~~Aa-----~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~l~~ 137 (138)
T 1klx_A 83 Y----YSKAC-----GLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGILNN 137 (138)
T ss_dssp H----HHHHH-----HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHC--
T ss_pred H----HHHHH-----cCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHhh
Confidence 9 99999 55444899999999999 8999999999999999988888877764
No 224
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.73 E-value=1.6e-08 Score=88.69 Aligned_cols=90 Identities=11% Similarity=-0.024 Sum_probs=83.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcc--cHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhhcCCHHH
Q 003035 752 NNLGSIYVECGKLDQAENCYINALDIK--HTR-AHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREM 828 (855)
Q Consensus 752 ~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~-a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~~g~~ee 828 (855)
.++|.++...|++++|+..|+++++.+ ++. +++++|.++..+|++++|++.|+++++++|+++.++.. +.+.+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----~~~~~ 79 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR----KMVMD 79 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH----HHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH----HHHHH
Confidence 568999999999999999999999998 888 99999999999999999999999999999999998754 67889
Q ss_pred HHHHHHHHHhcCCCCcc
Q 003035 829 AKNDLNMATQLDPLRTY 845 (855)
Q Consensus 829 A~~~~~kAl~l~P~~~~ 845 (855)
|...|++++..+|+++.
T Consensus 80 a~~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 80 ILNFYNKDMYNQLEHHH 96 (99)
T ss_dssp HHHHHCCTTHHHHCCSS
T ss_pred HHHHHHHHhccCccccc
Confidence 99999999999998764
No 225
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.66 E-value=8e-09 Score=92.03 Aligned_cols=86 Identities=10% Similarity=0.092 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCC------HHHHHHH
Q 003035 749 QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS------ASAFEKR 820 (855)
Q Consensus 749 ~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~------~~a~~~l 820 (855)
.++.++|.++...|++++|++.|+++++++ ++.+++++|.++..+|++++|++.++++++++|++ +.++..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 84 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRL 84 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 678999999999999999999999999998 89999999999999999999999999999999999 8888888
Q ss_pred hh----cCCHHHHHHHHH
Q 003035 821 SE----YSDREMAKNDLN 834 (855)
Q Consensus 821 g~----~g~~eeA~~~~~ 834 (855)
|. .|++++|+..++
T Consensus 85 ~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 85 ELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHhHhhhHhHHH
Confidence 87 566666655543
No 226
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.63 E-value=6e-08 Score=111.28 Aligned_cols=128 Identities=10% Similarity=-0.102 Sum_probs=104.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc-----CCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc--------CCh-H
Q 003035 646 QSLLLLRLNCQKAAMRCLRLARNH-----SSSE---HERLVYEGWILYDTGHREEALSRAEKSISIE--------RTF-E 708 (855)
Q Consensus 646 ~a~~l~~~g~~~~A~~~l~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~--------p~~-~ 708 (855)
.+..+..+|++++|+..+++++++ .|++ ...+.++|.+|..+|+|++|+.++++++++. |+. .
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 344567899999999999999975 3444 5667899999999999999999999999873 333 8
Q ss_pred HHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCC---CHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003035 709 AFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGL---RKG--QALNNLGSIYVECGKLDQAENCYINALDI 777 (855)
Q Consensus 709 a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~---~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~ 777 (855)
.++++|.+|..+|++++|... |++|++.....+ .|. +...+++.++.+++++++|...|+++.+.
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~----~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGM----ICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHH----HHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHH----HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999 998883322122 233 77788999999999999999998888653
No 227
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.62 E-value=6.9e-08 Score=85.41 Aligned_cols=66 Identities=5% Similarity=0.056 Sum_probs=62.3
Q ss_pred cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHh
Q 003035 669 HSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEAL 738 (855)
Q Consensus 669 ~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al 738 (855)
.+|+++.+++.+|.++..+|++++|+..|+++++++|++ .+|+.+|.+|...|++++|+.. |++++
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~----~~~al 68 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDT----YAQGI 68 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHH----HHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH----HHHHH
Confidence 479999999999999999999999999999999999999 9999999999999999999999 99999
No 228
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.62 E-value=8.8e-08 Score=109.93 Aligned_cols=126 Identities=13% Similarity=0.034 Sum_probs=105.4
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhcc-----CC---h-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCC---CCCHH
Q 003035 681 GWILYDTGHREEALSRAEKSISIE-----RT---F-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSD---GLRKG 748 (855)
Q Consensus 681 g~~~~~~g~~~eAl~~~~kal~~~-----p~---~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~---~~~p~ 748 (855)
+..+..+|++++|+..+++++++. |+ . .++.++|.+|..+|+|++|+.. ++++++.... ...|+
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~----~~~aL~i~~~~lG~~Hp~ 391 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHY----ARRMVDGYMKLYHHNNAQ 391 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH----HHHHHHHHHHHSCTTCHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHH----HHHHHHHHHHHcCCCCHH
Confidence 445678999999999999999873 33 3 8899999999999999999999 8888733211 22344
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-------cH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 003035 749 --QALNNLGSIYVECGKLDQAENCYINALDIK-------HT---RAHQGLARVYYLKNELKAAYDEMTKLLEKA 810 (855)
Q Consensus 749 --~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~-------~~---~a~~~lg~~~~~~g~~~~A~~~~~kal~~~ 810 (855)
..+++||.+|..+|++++|+..|++|+++. ++ ....+++.++..++.+++|...|.++.+..
T Consensus 392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 392 LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999875 33 456789999999999999999999997755
No 229
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.60 E-value=9.6e-08 Score=81.62 Aligned_cols=83 Identities=23% Similarity=0.294 Sum_probs=76.5
Q ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH-
Q 003035 671 SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG- 748 (855)
Q Consensus 671 p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~- 748 (855)
|..+..++.+|.++...|++++|+..|+++++.+|++ .+++.+|.++...|++++|+.. +++++ ..+|+
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~a~-----~~~p~~ 76 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY----YQKAL-----ELDPNN 76 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH----HHHHH-----HHCTTC
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHH----HHHHH-----hcCCCC
Confidence 3467889999999999999999999999999999999 9999999999999999999999 99999 77776
Q ss_pred -HHHHHHHHHHHHcC
Q 003035 749 -QALNNLGSIYVECG 762 (855)
Q Consensus 749 -~a~~~LG~~y~~~g 762 (855)
.++.++|.++...|
T Consensus 77 ~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 77 AEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC
Confidence 88999999987765
No 230
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.60 E-value=1.7e-06 Score=94.09 Aligned_cols=151 Identities=13% Similarity=0.042 Sum_probs=103.2
Q ss_pred HHHhcCCCcHHHH--HHHHHHHHHCCC---HHHHHHHHHHHHhccCCh-HHHHHHHHHHHH---CC-CCchhHHHHHHHH
Q 003035 665 LARNHSSSEHERL--VYEGWILYDTGH---REEALSRAEKSISIERTF-EAFFLKAYILAD---TN-LDPESSTYVIQLL 734 (855)
Q Consensus 665 ~al~~~p~~~~~~--~~lg~~~~~~g~---~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~---~g-~~~~A~~~~~~ll 734 (855)
.+....|.+.++| +..|.-+...++ ..+|+..|+++++++|++ .++-.++.+|.. .+ ........+-..+
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~ 264 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEI 264 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Confidence 3344456655554 556666665544 467888888888888888 776666666532 11 1112222211113
Q ss_pred HHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Q 003035 735 EEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK-HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQ 811 (855)
Q Consensus 735 e~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~-~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p 811 (855)
+.+... ...|. .++..+|..+...|++++|+..+++|+.++ +..++..+|+++...|++++|++.|++|+.++|
T Consensus 265 ~a~~a~---~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 265 DNIVTL---PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HHHHTC---GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHhc---ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 322211 22233 777778888888899999999999999999 888889999999999999999999999999999
Q ss_pred CCHHHHH
Q 003035 812 YSASAFE 818 (855)
Q Consensus 812 ~~~~a~~ 818 (855)
..+..+.
T Consensus 342 ~~~t~~~ 348 (372)
T 3ly7_A 342 GANTLYW 348 (372)
T ss_dssp SHHHHHH
T ss_pred CcChHHH
Confidence 8765443
No 231
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.51 E-value=7.3e-08 Score=84.34 Aligned_cols=69 Identities=12% Similarity=0.074 Sum_probs=64.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHH
Q 003035 644 FRQSLLLLRLNCQKAAMRCLRLARNHSSSEHE-RLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFL 712 (855)
Q Consensus 644 ~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~-~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~ 712 (855)
+..|..+...|++++|+..|+++++.+|+++. +++.+|.++..+|++++|+..|+++++++|++ .++..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 56788999999999999999999999999999 99999999999999999999999999999999 77633
No 232
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=98.46 E-value=4.9e-07 Score=79.83 Aligned_cols=80 Identities=26% Similarity=0.319 Sum_probs=69.8
Q ss_pred EEEEE-cCeEEEeeehhhhcCCHHHHHhhcCCCccCCCCeeEecCCCCCHHHHHHHHHHhccCC-----------CCC--
Q 003035 220 VTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSR-----------VDL-- 285 (855)
Q Consensus 220 V~f~v-~~~~~~aHr~vLaa~S~~F~~mf~~~~~E~~~~~I~l~~~~is~~~~~~ll~y~YTg~-----------l~~-- 285 (855)
|+++. +|+.|.++|.+ |..|..++.||.+++ |.....|.| ++|+..+++.+++|+|.-. ++.
T Consensus 6 v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~-e~~~~~Ipl--p~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w~ 81 (99)
T 1hv2_A 6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPF-RESKGRIEL--KQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFE 81 (99)
T ss_dssp EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSST-TTCTTEEEE--TTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCCC
T ss_pred EEEEecCCCEEEECHHH-HHHhHHHHHHHhccc-ccCCCceec--CCcCHHHHHHHHHHHHHhcccCCCccccccCCCcc
Confidence 88887 89999999997 899999999999877 666679999 9999999999999998532 221
Q ss_pred CCHHHHHHHHHHhchhCh
Q 003035 286 FCPGIVLELLSFANRFCC 303 (855)
Q Consensus 286 ~~~~~~~~ll~~A~~~~~ 303 (855)
++.+.+.+|+.+||.+++
T Consensus 82 vd~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 82 IPTEMSLELLLAADYLSI 99 (99)
T ss_dssp CCHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 889999999999999864
No 233
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.42 E-value=9.1e-06 Score=85.00 Aligned_cols=81 Identities=15% Similarity=0.140 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHccCC-HHHHHHHhh-----cCCHH
Q 003035 763 KLDQAENCYINALDIK----HTRAHQGLARVYYLK-----NELKAAYDEMTKLLEKAQYS-ASAFEKRSE-----YSDRE 827 (855)
Q Consensus 763 ~~~~A~~~~~kAL~~~----~~~a~~~lg~~~~~~-----g~~~~A~~~~~kal~~~p~~-~~a~~~lg~-----~g~~e 827 (855)
...+|...+++|++++ +..+|..+|.+|... |+.++|.++|+++++++|+. +.+++.+|+ .|+++
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 4688999999999999 578999999999995 99999999999999999975 999999999 59999
Q ss_pred HHHHHHHHHHhcCCCC
Q 003035 828 MAKNDLNMATQLDPLR 843 (855)
Q Consensus 828 eA~~~~~kAl~l~P~~ 843 (855)
+|...+++|+..+|..
T Consensus 258 ~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 258 GFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHcCCCCC
Confidence 9999999999998863
No 234
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.35 E-value=1e-05 Score=88.01 Aligned_cols=77 Identities=12% Similarity=0.022 Sum_probs=70.3
Q ss_pred HHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCChHH
Q 003035 632 MLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEA 709 (855)
Q Consensus 632 ~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~~a 709 (855)
.+..+|.++..+..++..+...|++++|+..+++|+.++|+ ..++..+|.++...|++++|+..|++|+.++|....
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 34667999999999999999999999999999999999985 678899999999999999999999999999998833
No 235
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=98.34 E-value=2.3e-06 Score=83.36 Aligned_cols=107 Identities=14% Similarity=0.109 Sum_probs=84.1
Q ss_pred EEEEE-cCeEEEeeehhhhcCCHHHHHhhcCCCc----cCCCCeeEecCCCCCHHHHHHHHHHhccCC------------
Q 003035 220 VTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFV----ESKRKTIDFSHDGVSVEGLRAVEVYTRTSR------------ 282 (855)
Q Consensus 220 V~f~v-~~~~~~aHr~vLaa~S~~F~~mf~~~~~----E~~~~~I~l~~~~is~~~~~~ll~y~YTg~------------ 282 (855)
|+++. +|+.|.+++.+ |..|..++.|+...-. +.....|.| ++|+..+++.|++|++.-.
T Consensus 9 i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~Ipl--pnV~s~iL~kVieyc~~h~~~~~~~~~~~~~ 85 (169)
T 3v7d_A 9 VVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPV--PNVRSSVLQKVIEWAEHHRDSNFPDEDDDDS 85 (169)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEEC--TTCCHHHHHHHHHHHHHTTTCCCCC------
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceee--CCCCHHHHHHHHHHHHHcccCCCcccccccc
Confidence 77776 79999999998 7899999999975332 233468999 9999999999999997543
Q ss_pred -------------CCCCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhcC--ChhhHHHHHHH
Q 003035 283 -------------VDLFCPGIVLELLSFANRFCCEEMKSACDAHLASLVG--DIEDALILIDY 330 (855)
Q Consensus 283 -------------l~~~~~~~~~~ll~~A~~~~~~~Lk~~C~~~l~~~l~--~~~n~~~~~~~ 330 (855)
+. ++.+.+.+|+.+||.+++..|...|++.++..+. +++....++.+
T Consensus 86 ~~~~~i~~wD~~Fl~-vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ikgktpeeiR~~f~I 147 (169)
T 3v7d_A 86 RKSAPVDSWDREFLK-VDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNI 147 (169)
T ss_dssp --CCCCCHHHHHHTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTC
T ss_pred cccccccHHHHHHHc-CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCHHHHHHHcCC
Confidence 22 6778999999999999999999999999988876 35555544443
No 236
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=98.34 E-value=4.7e-07 Score=79.52 Aligned_cols=81 Identities=31% Similarity=0.412 Sum_probs=64.0
Q ss_pred EEEEE-cCeEEEeeehhhhcCCHHHHHhhcC--CCccCCCCeeEecCCCCCHHHHHHHHHHhccCC--------CCC--C
Q 003035 220 VTFCV-RDKEISFVRNKIASLSSPFKAMLYG--GFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSR--------VDL--F 286 (855)
Q Consensus 220 V~f~v-~~~~~~aHr~vLaa~S~~F~~mf~~--~~~E~~~~~I~l~~~~is~~~~~~ll~y~YTg~--------l~~--~ 286 (855)
|+++. +|+.|.+||.+ |..|..++.||.+ .+.|+....|.| ++|+..+++.+++|+|... ++. +
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl--~~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~v 79 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNF--REIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPI 79 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEEC--SSCCHHHHHHHHHHHHHHHHHHSCCSCCCCCCC
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeC--CCCCHHHHHHHHHHHHHccccCCCcccCCCccc
Confidence 66776 89999999997 8999999999985 346777789999 9999999999999997432 211 7
Q ss_pred CHHHHHHHHHHhchhCh
Q 003035 287 CPGIVLELLSFANRFCC 303 (855)
Q Consensus 287 ~~~~~~~ll~~A~~~~~ 303 (855)
+.+.+.+|+.+||.+++
T Consensus 80 d~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 80 APEIALELLMAANFLDC 96 (96)
T ss_dssp CTTTHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 88999999999998864
No 237
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=98.34 E-value=2.4e-06 Score=76.64 Aligned_cols=95 Identities=9% Similarity=0.016 Sum_probs=77.5
Q ss_pred Cc-EEEEEcCeEEEeeehhhhcCC-HHHHHhhcCCCc----cCCCCeeEecCCCCCHHHHHHHHHHhccCCCCCCCHHH-
Q 003035 218 DS-VTFCVRDKEISFVRNKIASLS-SPFKAMLYGGFV----ESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGI- 290 (855)
Q Consensus 218 ~~-V~f~v~~~~~~aHr~vLaa~S-~~F~~mf~~~~~----E~~~~~I~l~~~~is~~~~~~ll~y~YTg~l~~~~~~~- 290 (855)
+. |++.|||+.|..++..|.... .+|..||.++.. .....++-| |-+|..|+.||+|+.||++. ++.+.
T Consensus 5 ~~~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi---DRdp~~F~~IL~~lr~g~l~-~p~~~~ 80 (107)
T 3drz_A 5 SKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI---DRDPTYFGPVLNYLRHGKLV-INKDLA 80 (107)
T ss_dssp CCEEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE---CSCHHHHHHHHHHHHHSCCC-CCTTSC
T ss_pred CCEEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe---cCChHHHHHHHHHhCCCeeC-CCCCCC
Confidence 44 999999999999999998765 378999986531 123446766 78999999999999999998 54432
Q ss_pred HHHHHHHhchhChHHHHHHHHHHHHh
Q 003035 291 VLELLSFANRFCCEEMKSACDAHLAS 316 (855)
Q Consensus 291 ~~~ll~~A~~~~~~~Lk~~C~~~l~~ 316 (855)
...++.-|..|+++.|++.|.+.|..
T Consensus 81 ~~~l~~Ea~fy~l~~L~~~l~~~i~~ 106 (107)
T 3drz_A 81 EEGVLEEAEFYNITSLIKLVKDKIRE 106 (107)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 46889999999999999999988764
No 238
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.33 E-value=1.2e-05 Score=84.17 Aligned_cols=102 Identities=16% Similarity=-0.051 Sum_probs=84.8
Q ss_pred HcCCCChHHHHHHHHHHHH-----------cCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHC-----CCHHHHHH
Q 003035 634 INDPGKSFLRFRQSLLLLR-----------LNCQKAAMRCLRLARNHSSS--EHERLVYEGWILYDT-----GHREEALS 695 (855)
Q Consensus 634 ~~~p~~~~~~~~~a~~l~~-----------~g~~~~A~~~l~~al~~~p~--~~~~~~~lg~~~~~~-----g~~~eAl~ 695 (855)
..+|++...++..|..+.. .+....|...++++++++|+ +..+|..+|.+|... |+.++|.+
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~ 225 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT 225 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence 3456677777777665432 22357889999999999999 677999999999995 99999999
Q ss_pred HHHHHHhccCCh--HHHHHHHHHHHH-CCCCchhHHHHHHHHHHHhc
Q 003035 696 RAEKSISIERTF--EAFFLKAYILAD-TNLDPESSTYVIQLLEEALR 739 (855)
Q Consensus 696 ~~~kal~~~p~~--~a~~~lg~~~~~-~g~~~~A~~~~~~lle~al~ 739 (855)
+|+++++++|+. .+++..|..+.. +|+++++... +++++.
T Consensus 226 ~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~----L~kAL~ 268 (301)
T 3u64_A 226 AFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEA----LDRALA 268 (301)
T ss_dssp HHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHH----HHHHHH
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHH----HHHHHc
Confidence 999999999964 999999999988 4999999999 999993
No 239
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.27 E-value=3.6e-06 Score=73.52 Aligned_cols=72 Identities=10% Similarity=-0.092 Sum_probs=66.4
Q ss_pred CCCChHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh
Q 003035 636 DPGKSFLRFRQSLLLLRLNC---QKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (855)
Q Consensus 636 ~p~~~~~~~~~a~~l~~~g~---~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~ 707 (855)
+|.++..++.+|.+++..++ .++|...++++++.+|+++.+++.+|.+++..|+|++|+..++++++.+|..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 68899999999998876655 7999999999999999999999999999999999999999999999999875
No 240
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.09 E-value=4.8e-06 Score=93.92 Aligned_cols=68 Identities=9% Similarity=0.015 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-------c---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----ccCC
Q 003035 749 QALNNLGSIYVECGKLDQAENCYINALDIK-------H---TRAHQGLARVYYLKNELKAAYDEMTKLLEK-----AQYS 813 (855)
Q Consensus 749 ~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~-------~---~~a~~~lg~~~~~~g~~~~A~~~~~kal~~-----~p~~ 813 (855)
..+++||.+|..+|+|++|+.+|+++|++. + ...++++|.+|..+|++++|+.+|++|+++ .|++
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~H 420 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDH 420 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 889999999999999999999999999875 3 356899999999999999999999999986 4666
Q ss_pred HHH
Q 003035 814 ASA 816 (855)
Q Consensus 814 ~~a 816 (855)
|..
T Consensus 421 p~~ 423 (433)
T 3qww_A 421 PYI 423 (433)
T ss_dssp HHH
T ss_pred hHH
Confidence 654
No 241
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.09 E-value=1.5e-05 Score=75.47 Aligned_cols=87 Identities=14% Similarity=0.060 Sum_probs=77.0
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC-C-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q 003035 629 INQMLINDPGKSFLRFRQSLLLLRLN---CQKAAMRCLRLARNHS-S-SEHERLVYEGWILYDTGHREEALSRAEKSISI 703 (855)
Q Consensus 629 ~~~~l~~~p~~~~~~~~~a~~l~~~g---~~~~A~~~l~~al~~~-p-~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~ 703 (855)
+...+..+|.+..+.|+.|+.+.+.+ +.++++..|+.+++.+ | +..+.+|++|..++++|+|++|.+++++++++
T Consensus 21 y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 21 FQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44556778899999999999999988 6779999999999998 7 67899999999999999999999999999999
Q ss_pred cCCh-HHHHHHHH
Q 003035 704 ERTF-EAFFLKAY 715 (855)
Q Consensus 704 ~p~~-~a~~~lg~ 715 (855)
+|++ .+...+-.
T Consensus 101 eP~n~QA~~Lk~~ 113 (152)
T 1pc2_A 101 EPQNNQAKELERL 113 (152)
T ss_dssp CTTCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 9998 77665443
No 242
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.08 E-value=1.5e-05 Score=89.88 Aligned_cols=98 Identities=9% Similarity=0.035 Sum_probs=80.7
Q ss_pred HHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-------cH---H
Q 003035 717 LADTNLDPESSTYVIQLLEEALRCPSDGLRKG-----QALNNLGSIYVECGKLDQAENCYINALDIK-------HT---R 781 (855)
Q Consensus 717 ~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~-----~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~-------~~---~ 781 (855)
+..+|++++|+.. ++++++.....+.|+ ..+++||.+|..+|++++|+.+++++|++. ++ .
T Consensus 297 ~~~~g~~~~a~~~----~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 297 LKAHWKWEQVLAM----CQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHTTCHHHHHHH----HHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHhhccHHHHHHH----HHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 4567788888888 888885544444443 899999999999999999999999999875 33 5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-----ccCCHHHHH
Q 003035 782 AHQGLARVYYLKNELKAAYDEMTKLLEK-----AQYSASAFE 818 (855)
Q Consensus 782 a~~~lg~~~~~~g~~~~A~~~~~kal~~-----~p~~~~a~~ 818 (855)
.++++|.+|..+|++++|+.+|++|+++ .|++|....
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 6899999999999999999999999986 466665543
No 243
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.06 E-value=2.3e-05 Score=69.73 Aligned_cols=74 Identities=19% Similarity=0.073 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHH
Q 003035 749 QALNNLGSIYVECGKLDQAENCYINALDIK---------HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEK 819 (855)
Q Consensus 749 ~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~---------~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~ 819 (855)
.-++.||..+...|+++.|+..|++|++.. ...++..+|.+++++|++++|+..++++++++|+++.+..+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 345789999999999999999999999853 57889999999999999999999999999999999999887
Q ss_pred Hhh
Q 003035 820 RSE 822 (855)
Q Consensus 820 lg~ 822 (855)
++.
T Consensus 86 ~~~ 88 (104)
T 2v5f_A 86 LKY 88 (104)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 244
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.00 E-value=4e-06 Score=94.57 Aligned_cols=88 Identities=14% Similarity=0.040 Sum_probs=55.5
Q ss_pred CCCHHHHHHHHHHHHhcc-----CCh----HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCC---CCCCHH--HHHH
Q 003035 687 TGHREEALSRAEKSISIE-----RTF----EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPS---DGLRKG--QALN 752 (855)
Q Consensus 687 ~g~~~eAl~~~~kal~~~-----p~~----~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~---~~~~p~--~a~~ 752 (855)
.|+|++|+..|++++++. |++ ..+.++|.+|..+|+|++|+.. ++++++... ....|+ ..++
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~----~~~aL~i~~~~lG~~Hp~~a~~l~ 386 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKY----GQKIIKPYSKHYPVYSLNVASMWL 386 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH----HHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHH----HHHHHHHHHHHcCCCChHHHHHHH
Confidence 345555555555555431 221 4455555555555555555555 555442111 123455 8899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcc
Q 003035 753 NLGSIYVECGKLDQAENCYINALDIK 778 (855)
Q Consensus 753 ~LG~~y~~~g~~~~A~~~~~kAL~~~ 778 (855)
+||.+|..+|++++|+..|++|+++.
T Consensus 387 nLa~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 387 KLGRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999876
No 245
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.93 E-value=6e-05 Score=66.93 Aligned_cols=76 Identities=14% Similarity=0.070 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHH
Q 003035 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHS-------SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFF 711 (855)
Q Consensus 640 ~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~-------p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~ 711 (855)
+.-.+.+|..+++.|+|..|+..|++|++.. +..++++..+|.+++.+|++++|+..+++++++.|++ .+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 4456889999999999999999999999863 4568899999999999999999999999999999999 7777
Q ss_pred HHHH
Q 003035 712 LKAY 715 (855)
Q Consensus 712 ~lg~ 715 (855)
+++.
T Consensus 85 n~~~ 88 (104)
T 2v5f_A 85 NLKY 88 (104)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 7763
No 246
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.91 E-value=2.3e-05 Score=68.33 Aligned_cols=66 Identities=17% Similarity=-0.005 Sum_probs=62.6
Q ss_pred CCCcHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhc
Q 003035 670 SSSEHERLVYEGWILYDTGH---REEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALR 739 (855)
Q Consensus 670 ~p~~~~~~~~lg~~~~~~g~---~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~ 739 (855)
+|++++.+..+|.+++..++ .++|...++++++++|++ .+++.+|..++..|+|++|+.. ++++++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~----w~~~l~ 71 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDT----WVLLLD 71 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH----HHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHHh
Confidence 68999999999999987766 799999999999999999 9999999999999999999999 999993
No 247
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.91 E-value=1.3e-05 Score=90.37 Aligned_cols=108 Identities=10% Similarity=-0.080 Sum_probs=85.2
Q ss_pred HHHcCCHHHHHHHHHHHHhc-----CCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc--------CCh-HHHHH
Q 003035 650 LLRLNCQKAAMRCLRLARNH-----SSSE---HERLVYEGWILYDTGHREEALSRAEKSISIE--------RTF-EAFFL 712 (855)
Q Consensus 650 l~~~g~~~~A~~~l~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~--------p~~-~a~~~ 712 (855)
+..+|++++|+..+++++++ .|++ ...+.++|.+|..+|+|++|+.++++++++. |+. ..+++
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 55789999999999999975 3444 4567899999999999999999999999863 333 88999
Q ss_pred HHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCC---HH--HHHHHHHHHHHHc
Q 003035 713 KAYILADTNLDPESSTYVIQLLEEALRCPSDGLR---KG--QALNNLGSIYVEC 761 (855)
Q Consensus 713 lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~---p~--~a~~~LG~~y~~~ 761 (855)
+|.+|..+|++++|+.. |++|++.....+. |. +++.+|+.+..++
T Consensus 377 La~~~~~~g~~~eA~~~----~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKN----LRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHTTCHHHHHHH----HHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHH----HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999 9888833222222 33 6677777776543
No 248
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=97.90 E-value=1.5e-05 Score=71.71 Aligned_cols=81 Identities=31% Similarity=0.400 Sum_probs=63.5
Q ss_pred EEEEE-cCeEEEeeehhhhcCCHHHHHhhcC--CCccCCCCeeEecCCCCCHHHHHHHHHHhccCC--------CCC--C
Q 003035 220 VTFCV-RDKEISFVRNKIASLSSPFKAMLYG--GFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSR--------VDL--F 286 (855)
Q Consensus 220 V~f~v-~~~~~~aHr~vLaa~S~~F~~mf~~--~~~E~~~~~I~l~~~~is~~~~~~ll~y~YTg~--------l~~--~ 286 (855)
|+++- +|+.|.++|. +|..|..++.|+.+ .+.|.....|.| ++|+..+++.|++|++... ++. +
T Consensus 19 v~L~SsDG~~F~V~~~-~A~~S~tIk~ml~~~~~~~e~~~~~Ipl--pnV~s~iL~kVieyc~~h~~~~~~~~~i~~w~v 95 (112)
T 1vcb_B 19 VKLISSDGHEFIVKRE-HALTSGTIKAMLSGPGQFAENETNEVNF--REIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPI 95 (112)
T ss_dssp EEEECTTSCEEEEEHH-HHHTSHHHHHHSSCC--------CEEEC--SSCCHHHHHHHHHHHHHHHHHSSCSSCCCCCCC
T ss_pred EEEEcCCCCEEEECHH-HHHHhHHHHHHHHhcCCcccccCCceeC--CCCCHHHHHHHHHHHHHhhhccCCcCCCCCccc
Confidence 88885 8999999999 57899999999984 456766678999 9999999999999996322 211 8
Q ss_pred CHHHHHHHHHHhchhCh
Q 003035 287 CPGIVLELLSFANRFCC 303 (855)
Q Consensus 287 ~~~~~~~ll~~A~~~~~ 303 (855)
+.+.+++|+.+||.+.+
T Consensus 96 d~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 96 APEIALELLMAANFLDC 112 (112)
T ss_dssp CHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 89999999999999875
No 249
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.88 E-value=3.4e-05 Score=73.13 Aligned_cols=89 Identities=11% Similarity=0.032 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcc-CC-h-HHHHHHHHHHHHCCCCchhHHH
Q 003035 656 QKAAMRCLRLARNHSSSEHERLVYEGWILYDTG---HREEALSRAEKSISIE-RT-F-EAFFLKAYILADTNLDPESSTY 729 (855)
Q Consensus 656 ~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g---~~~eAl~~~~kal~~~-p~-~-~a~~~lg~~~~~~g~~~~A~~~ 729 (855)
...+.+.|.+.++.+|.+.++.|.+||++...+ +.++++..+++.++.+ |+ . +++|++|..+++.|+|++|..+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 456777888888989999999999999999998 6779999999999998 73 4 9999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCHH--HHHHH
Q 003035 730 VIQLLEEALRCPSDGLRKG--QALNN 753 (855)
Q Consensus 730 ~~~lle~al~~~~~~~~p~--~a~~~ 753 (855)
+++++ +.+|+ ++...
T Consensus 94 ----~~~lL-----~ieP~n~QA~~L 110 (152)
T 1pc2_A 94 ----VRGLL-----QTEPQNNQAKEL 110 (152)
T ss_dssp ----HHHHH-----HHCTTCHHHHHH
T ss_pred ----HHHHH-----hcCCCCHHHHHH
Confidence 99999 88886 55543
No 250
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.83 E-value=1.5e-05 Score=71.27 Aligned_cols=49 Identities=10% Similarity=0.042 Sum_probs=45.4
Q ss_pred HhhcCChhhHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhcCChhHHhhh
Q 003035 315 ASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKIF 364 (855)
Q Consensus 315 ~~~l~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~v~~~~~f~~ll 364 (855)
.+.++ ++||+.++.+|..|+++.|.+.|.+||.+||.++.++++|.+|-
T Consensus 5 ~~~L~-~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~~v~~~~eFl~L~ 53 (105)
T 2eqx_A 5 SSGVQ-VGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLP 53 (105)
T ss_dssp CCCCC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCHHHHTSHHHHHSC
T ss_pred hccCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccHhhCC
Confidence 35677 99999999999999999999999999999999999999998765
No 251
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.59 E-value=0.0021 Score=73.78 Aligned_cols=158 Identities=9% Similarity=0.006 Sum_probs=129.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHhc--cCChHHHHHHH
Q 003035 648 LLLLRLNCQKAAMRCLRLARNHS--SSEHERLVYEGWILYDTG---------HREEALSRAEKSISI--ERTFEAFFLKA 714 (855)
Q Consensus 648 ~~l~~~g~~~~A~~~l~~al~~~--p~~~~~~~~lg~~~~~~g---------~~~eAl~~~~kal~~--~p~~~a~~~lg 714 (855)
..+.+.|+.++|++.|+++.+.. | +...|..+-.++...+ +.++|...|++..+. .|+...|..+-
T Consensus 34 d~c~k~G~~~~A~~lf~~M~~~Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI 112 (501)
T 4g26_A 34 DMCSKKGDVLEALRLYDEARRNGVQL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGA 112 (501)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 45678999999999999988753 4 4556665655555443 378899999987764 56668899999
Q ss_pred HHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc---cHHHHHHHHHHH
Q 003035 715 YILADTNLDPESSTYVIQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDIK---HTRAHQGLARVY 790 (855)
Q Consensus 715 ~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~-~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~---~~~a~~~lg~~~ 790 (855)
..|.+.|+.++|... |++..+ ..+.|+ ..|+.+=..|.+.|+.++|.+.|++..+.. +...|..+-..+
T Consensus 113 ~~~~~~g~~~~A~~l----~~~M~~---~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 113 RLAVAKDDPEMAFDM----VKQMKA---FGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHTCHHHHHHH----HHHHHH---TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHH----HHHHHH---cCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 999999999999999 888772 245677 889999999999999999999999998877 888999999999
Q ss_pred HHcCCHHHHHHHHHHHHHH--ccCC
Q 003035 791 YLKNELKAAYDEMTKLLEK--AQYS 813 (855)
Q Consensus 791 ~~~g~~~~A~~~~~kal~~--~p~~ 813 (855)
.+.|+.++|.+.+++.-+. .|+.
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~ 210 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSK 210 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCH
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCH
Confidence 9999999999999988764 4553
No 252
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=97.54 E-value=0.00025 Score=69.93 Aligned_cols=98 Identities=9% Similarity=0.004 Sum_probs=77.0
Q ss_pred CCCCc-EEEEEcCeEEEeeehhhhcCC-HHHHHhhcCCC--c--cCCCCeeEecCCCCCHHHHHHHHHHhccCCCCCCCH
Q 003035 215 EEDDS-VTFCVRDKEISFVRNKIASLS-SPFKAMLYGGF--V--ESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCP 288 (855)
Q Consensus 215 ~~~~~-V~f~v~~~~~~aHr~vLaa~S-~~F~~mf~~~~--~--E~~~~~I~l~~~~is~~~~~~ll~y~YTg~l~~~~~ 288 (855)
...+. |+|.|||..|...+..|.... .+|..||.+.. . .....++-| |-+|..|+.||+|+.||.+. ++.
T Consensus 8 g~~~~~V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFI---DRDP~~F~~ILnyLRtG~L~-lP~ 83 (202)
T 3drx_A 8 GSVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI---DRDPTYFGPVLNYLRHGKLV-INK 83 (202)
T ss_dssp SCCCCEEEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEE---CSCSTTHHHHHHHHHHSCCC-CCT
T ss_pred CCCCCEEEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEe---cCChHHHHHHHHHhcCCccC-CCC
Confidence 33445 999999999999999997654 37899987642 1 113446766 67999999999999999998 544
Q ss_pred HH-HHHHHHHhchhChHHHHHHHHHHHHh
Q 003035 289 GI-VLELLSFANRFCCEEMKSACDAHLAS 316 (855)
Q Consensus 289 ~~-~~~ll~~A~~~~~~~Lk~~C~~~l~~ 316 (855)
+. ...++.-|.+|+|+.|.+.|.+.|..
T Consensus 84 ~~~~~~l~eEA~FygL~~Lv~~l~~~i~e 112 (202)
T 3drx_A 84 DLAEEGVLEEAEFYNITSLIKLVKDKIRE 112 (202)
T ss_dssp TSCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCcHHHHHHHHHHHHH
Confidence 32 35788999999999999999988864
No 253
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.37 E-value=0.0041 Score=71.41 Aligned_cols=158 Identities=11% Similarity=0.056 Sum_probs=123.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--cCChHHHHHHHHHHHHCCCCch-----hHHHHHHHHHHHhcCCCCCCCHH-
Q 003035 677 LVYEGWILYDTGHREEALSRAEKSISI--ERTFEAFFLKAYILADTNLDPE-----SSTYVIQLLEEALRCPSDGLRKG- 748 (855)
Q Consensus 677 ~~~lg~~~~~~g~~~eAl~~~~kal~~--~p~~~a~~~lg~~~~~~g~~~~-----A~~~~~~lle~al~~~~~~~~p~- 748 (855)
+...-..+.+.|+.++|++.|++..+. .|+...|..+-.++...+...+ .+..+.++|++..+ ..+.|+
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~---~G~~Pd~ 105 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV---DKVVPNE 105 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH---TTCCCCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHH---hCCCCCH
Confidence 445557778999999999999998874 5666777777667766655432 12233333887762 345677
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--ccCCHHHHHHHhh-
Q 003035 749 QALNNLGSIYVECGKLDQAENCYINALDIK---HTRAHQGLARVYYLKNELKAAYDEMTKLLEK--AQYSASAFEKRSE- 822 (855)
Q Consensus 749 ~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~---~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~--~p~~~~a~~~lg~- 822 (855)
..|+.+-..|.+.|++++|.+.|++..+.. +...|..+-..|.+.|+.++|.+.|++..+. .|+ ...|..+-.
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd-~~ty~~Li~~ 184 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE-EPELAALLKV 184 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHH
Confidence 889999999999999999999999998876 8889999999999999999999999998875 354 555555544
Q ss_pred ---cCCHHHHHHHHHHHHh
Q 003035 823 ---YSDREMAKNDLNMATQ 838 (855)
Q Consensus 823 ---~g~~eeA~~~~~kAl~ 838 (855)
.|+.++|.+.+++.-+
T Consensus 185 ~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 185 SMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HhhCCCHHHHHHHHHHHHH
Confidence 9999999999987544
No 254
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.30 E-value=0.0012 Score=60.28 Aligned_cols=88 Identities=15% Similarity=0.088 Sum_probs=74.9
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHcCCHHH---HHHHHHHHHhcC-C-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q 003035 629 INQMLINDPGKSFLRFRQSLLLLRLNCQKA---AMRCLRLARNHS-S-SEHERLVYEGWILYDTGHREEALSRAEKSISI 703 (855)
Q Consensus 629 ~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~---A~~~l~~al~~~-p-~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~ 703 (855)
+...+..++......|..|+.+...++..+ ++..++..+..+ | ..-+.+|++|..+++.|+|++|..+++..++.
T Consensus 24 y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 24 FQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 344556678889999999999999888776 999999999887 5 56788999999999999999999999999999
Q ss_pred cCCh-HHHHHHHHH
Q 003035 704 ERTF-EAFFLKAYI 716 (855)
Q Consensus 704 ~p~~-~a~~~lg~~ 716 (855)
.|++ .+......+
T Consensus 104 eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 104 EPQNNQAKELERLI 117 (126)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 9999 776655443
No 255
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.96 E-value=0.0025 Score=58.19 Aligned_cols=91 Identities=12% Similarity=0.031 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHH---HHHHHHHHHhcc-CCh--HHHHHHHHHHHHCCCCchhHHH
Q 003035 656 QKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREE---ALSRAEKSISIE-RTF--EAFFLKAYILADTNLDPESSTY 729 (855)
Q Consensus 656 ~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~e---Al~~~~kal~~~-p~~--~a~~~lg~~~~~~g~~~~A~~~ 729 (855)
...+.+.|.+.+..++...++.|.+||.+...++... ++..++..+... |.. +.+|.+|..+++.|+|++|..+
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4566777888888888899999999999999998777 999999999988 644 9999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCHH--HHHHHHH
Q 003035 730 VIQLLEEALRCPSDGLRKG--QALNNLG 755 (855)
Q Consensus 730 ~~~lle~al~~~~~~~~p~--~a~~~LG 755 (855)
++..+ ...|+ ++.....
T Consensus 97 ----~~~lL-----~~eP~n~QA~~Lk~ 115 (126)
T 1nzn_A 97 ----VRGLL-----QTEPQNNQAKELER 115 (126)
T ss_dssp ----HHHHH-----HHCTTCHHHHHHHH
T ss_pred ----HHHHH-----HhCCCCHHHHHHHH
Confidence 99999 88886 5554433
No 256
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.74 E-value=0.0061 Score=58.09 Aligned_cols=129 Identities=12% Similarity=0.033 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC---h-H
Q 003035 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---------HERLVYEGWILYDTGHREEALSRAEKSISIERT---F-E 708 (855)
Q Consensus 642 ~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~---------~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~---~-~ 708 (855)
.++.....++..|.|+.|+-....++....++ .++++++|..++..|+|..|...|+++|+.... . .
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45556667888999999998888876654322 347789999999999999999999999886432 1 1
Q ss_pred HHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-cHHHHHHH
Q 003035 709 AFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDIK-HTRAHQGL 786 (855)
Q Consensus 709 a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~-~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~-~~~a~~~l 786 (855)
+.-..+. . .. ..... .+..+ +..+.++.||.+.|++++|+..++..-... .+.+...|
T Consensus 102 ~~~~~~~----~-------ss----~p~s~-----~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~L 161 (167)
T 3ffl_A 102 VRPSTGN----S-------AS----TPQSQ-----CLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLL 161 (167)
T ss_dssp -----------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHH
T ss_pred ccccccc----c-------CC----Ccccc-----cccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHH
Confidence 1101100 0 00 11111 22223 777888999999999999999887654444 78888888
Q ss_pred HHHH
Q 003035 787 ARVY 790 (855)
Q Consensus 787 g~~~ 790 (855)
|..|
T Consensus 162 akLy 165 (167)
T 3ffl_A 162 ANLY 165 (167)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 8765
No 257
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.52 E-value=0.032 Score=51.73 Aligned_cols=79 Identities=18% Similarity=0.114 Sum_probs=68.0
Q ss_pred CCChHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHH
Q 003035 637 PGKSFLRFRQSLLLLRLNCQ---KAAMRCLRLARNHSS-SEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFF 711 (855)
Q Consensus 637 p~~~~~~~~~a~~l~~~g~~---~~A~~~l~~al~~~p-~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~ 711 (855)
.......|+.|+.+.+..+. .+++..++..+...| ..-+.+|++|..++++|+|++|.++.+..++..|++ .+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 55778899999999987764 579999999999888 467888999999999999999999999999999999 6665
Q ss_pred HHHH
Q 003035 712 LKAY 715 (855)
Q Consensus 712 ~lg~ 715 (855)
....
T Consensus 116 Lk~~ 119 (144)
T 1y8m_A 116 LKSM 119 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 258
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.25 E-value=0.02 Score=53.41 Aligned_cols=69 Identities=13% Similarity=0.134 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHH
Q 003035 749 QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFE 818 (855)
Q Consensus 749 ~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~ 818 (855)
..|...+.. ...++.++|.+.|+.++++. .+.+|...|..-.++|+..+|.+.+.+++.+.|.....+.
T Consensus 62 ~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le 132 (161)
T 4h7y_A 62 RIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE 132 (161)
T ss_dssp HHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred HHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence 566666644 56799999999999999887 8889999999999999999999999999999998766544
No 259
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.24 E-value=0.027 Score=51.48 Aligned_cols=78 Identities=19% Similarity=0.125 Sum_probs=66.7
Q ss_pred CChHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHH
Q 003035 638 GKSFLRFRQSLLLLRLNCQ---KAAMRCLRLARNHSSS-EHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFL 712 (855)
Q Consensus 638 ~~~~~~~~~a~~l~~~g~~---~~A~~~l~~al~~~p~-~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~ 712 (855)
-.+...|+.|+.+.+.++. ..++..++..+..+|. .-+.++++|..+++.|+|++|.++.+..++..|++ .+...
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 3567889999999887664 5799999999999984 57889999999999999999999999999999999 66655
Q ss_pred HHH
Q 003035 713 KAY 715 (855)
Q Consensus 713 lg~ 715 (855)
...
T Consensus 118 k~~ 120 (134)
T 3o48_A 118 KSM 120 (134)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 260
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=95.71 E-value=0.006 Score=54.94 Aligned_cols=84 Identities=7% Similarity=0.033 Sum_probs=64.1
Q ss_pred EEEEEcCeEEEeeehhhhcCCH-HHHHhhcCCC-ccCCCCeeEecCCCCCHHHHHHHHHHhccCCCCCCCHH-HHHHHHH
Q 003035 220 VTFCVRDKEISFVRNKIASLSS-PFKAMLYGGF-VESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPG-IVLELLS 296 (855)
Q Consensus 220 V~f~v~~~~~~aHr~vLaa~S~-~F~~mf~~~~-~E~~~~~I~l~~~~is~~~~~~ll~y~YTg~l~~~~~~-~~~~ll~ 296 (855)
|++.|||..|...+..|..... .+..||.+.. .....+++-| |-+|..|+.||+|+.||++. ++.+ .+..++.
T Consensus 7 V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~Fi---DRdp~~F~~ILnylR~G~l~-~p~~~~~~~~~~ 82 (115)
T 3kvt_A 7 VIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF---DRHPGVFAQIINYYRSGKLH-YPTDVCGPLFEE 82 (115)
T ss_dssp EEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE---CSCTTTHHHHHHHHHHSCBC-CCSSSCHHHHHH
T ss_pred EEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEE---ecChHHHHHHHHHhcCCCCC-CCCcccHHHHHH
Confidence 9999999999999999976533 3555665422 1234457777 67999999999999999997 5443 3568889
Q ss_pred HhchhChHHHH
Q 003035 297 FANRFCCEEMK 307 (855)
Q Consensus 297 ~A~~~~~~~Lk 307 (855)
-|..|+|+...
T Consensus 83 Ea~fy~i~~~~ 93 (115)
T 3kvt_A 83 ELEFWGLDSNQ 93 (115)
T ss_dssp HHHHHTCCGGG
T ss_pred HHHHhCCChHH
Confidence 99999998743
No 261
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.59 E-value=0.11 Score=48.54 Aligned_cols=119 Identities=8% Similarity=-0.018 Sum_probs=85.5
Q ss_pred hcCCCcHHHHHHHHHHHHHCCCH------HHHHHHHHHHHhccCCh---------HHHHHHHHHHHHCCCCchhHHHHHH
Q 003035 668 NHSSSEHERLVYEGWILYDTGHR------EEALSRAEKSISIERTF---------EAFFLKAYILADTNLDPESSTYVIQ 732 (855)
Q Consensus 668 ~~~p~~~~~~~~lg~~~~~~g~~------~eAl~~~~kal~~~p~~---------~a~~~lg~~~~~~g~~~~A~~~~~~ 732 (855)
-..|++++.|..........|+. ++-+..|++|+..-|.. ..|...|.. ...++.++|...
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~v--- 82 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDY--- 82 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHH---
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHH---
Confidence 35788888888888888877888 88888888888765531 444555544 455899999999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHcC
Q 003035 733 LLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK-HTRAHQGLARVYYLKN 794 (855)
Q Consensus 733 lle~al~~~~~~~~p~~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~-~~~a~~~lg~~~~~~g 794 (855)
|+.+++. -... ..+|...|..-..+|+.++|.+.+.+|+.+. .+.-+...+.--...|
T Consensus 83 -y~~a~~~-hKkF--AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl~~~ 141 (161)
T 4h7y_A 83 -FQMARAN-CKKF--AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNLNLQ 141 (161)
T ss_dssp -HHHHHHH-CTTB--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHHTT
T ss_pred -HHHHHHH-hHHH--HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhhhcC
Confidence 9999842 1111 3899999999999999999999999999988 4444444444333433
No 262
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=95.53 E-value=0.018 Score=52.54 Aligned_cols=89 Identities=13% Similarity=0.147 Sum_probs=65.3
Q ss_pred EEEEEcCeEEEeeehhhhcCCHHHHHhhcCC----CccCCCCeeEecCCCCCHHHHHHHHHHhccCCCCCCCHH-HHHHH
Q 003035 220 VTFCVRDKEISFVRNKIASLSSPFKAMLYGG----FVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPG-IVLEL 294 (855)
Q Consensus 220 V~f~v~~~~~~aHr~vLaa~S~~F~~mf~~~----~~E~~~~~I~l~~~~is~~~~~~ll~y~YTg~l~~~~~~-~~~~l 294 (855)
|++.|||..|..-+..|.... .+||... +.....+++-| |-++..|+.||+|+.||++. ++.+ .+..+
T Consensus 15 V~LNVGG~~F~t~~~TL~~~p---~S~L~~~~~~~~~~~~~g~~Fi---DRdp~~F~~ILnflR~G~l~-~p~~~~~~~l 87 (124)
T 1s1g_A 15 IVLNVSGRRFQTWRTTLERYP---DTLLGSTEKEFFFNEDTKEYFF---DRDPEVFRCVLNFYRTGKLH-YPRYECISAY 87 (124)
T ss_dssp EEEEETTEEEEEEHHHHTTST---TSSTTSSGGGGTBCSSSCSEEE---CSCHHHHHHHHHHHHHSCBC-CCTTSCHHHH
T ss_pred EEEEeCCEEEEEeHHHHhcCC---CceecccCCcccccCCCCcEEE---cCChHHHHHHHHHHhcCCCC-CCCCcCHHHH
Confidence 999999999999999996532 3455431 11123456766 67999999999999999998 5544 46789
Q ss_pred HHHhchhChHHHH--HHHHHHHH
Q 003035 295 LSFANRFCCEEMK--SACDAHLA 315 (855)
Q Consensus 295 l~~A~~~~~~~Lk--~~C~~~l~ 315 (855)
+.-|+.|+|+.+. .-|.....
T Consensus 88 ~~Ea~fy~i~~l~l~~cC~~~~~ 110 (124)
T 1s1g_A 88 DDELAFYGILPEIIGDCCYEEYK 110 (124)
T ss_dssp HHHHHHTTCCGGGBCHHHHHHHH
T ss_pred HHHHHHcCCChHHHHHHHHHHHH
Confidence 9999999999863 33444433
No 263
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.38 E-value=0.036 Score=50.73 Aligned_cols=69 Identities=12% Similarity=-0.023 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHhcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHH
Q 003035 749 QALNNLGSIYVECGK---LDQAENCYINALDIK---HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAF 817 (855)
Q Consensus 749 ~a~~~LG~~y~~~g~---~~~A~~~~~kAL~~~---~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~ 817 (855)
++.+++|+++....+ ..+++..++..++.+ .-..++.+|..+++.|+|.+|..+.+.++++.|+|..+.
T Consensus 41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 455555555554432 334555555544433 234455555555555555555555555555555554443
No 264
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.21 E-value=0.066 Score=50.97 Aligned_cols=109 Identities=15% Similarity=0.035 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCC---CCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc---
Q 003035 708 EAFFLKAYILADTNLDPESSTYVIQLLEEALRCP---SDGLRKG---QALNNLGSIYVECGKLDQAENCYINALDIK--- 778 (855)
Q Consensus 708 ~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~---~~~~~p~---~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--- 778 (855)
.+++.-...+.+.|.|+.|+-. ...++... .+...|. +++..+|+.++..|+|..|...|++||+..
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~L----a~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l 96 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLL----SSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKAL 96 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHH----HHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhhhHHHHHHH----HHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH
Confidence 3455555666677777776665 44443221 1223344 788999999999999999999999998765
Q ss_pred --cH----------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHh
Q 003035 779 --HT----------------------RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS 821 (855)
Q Consensus 779 --~~----------------------~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg 821 (855)
+. ++.+.++.+|...|++.+|+..++.+-. ....+.....||
T Consensus 97 ~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~La 162 (167)
T 3ffl_A 97 SKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLA 162 (167)
T ss_dssp --------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHH
T ss_pred hcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHH
Confidence 11 5678889999999999999888765322 223455544444
No 265
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=95.19 E-value=0.012 Score=54.80 Aligned_cols=80 Identities=13% Similarity=0.086 Sum_probs=61.8
Q ss_pred EEEEEcCeEEEeeehhhhcCCHHHHHhhcCCC----ccCCCCeeEecCCCCCHHHHHHHHHHhccCCCCCCCHH-HHHHH
Q 003035 220 VTFCVRDKEISFVRNKIASLSSPFKAMLYGGF----VESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPG-IVLEL 294 (855)
Q Consensus 220 V~f~v~~~~~~aHr~vLaa~S~~F~~mf~~~~----~E~~~~~I~l~~~~is~~~~~~ll~y~YTg~l~~~~~~-~~~~l 294 (855)
|+|.|||..|...+..|.... .+||...- .....+++-| |-++..|+.||+|+.||++. ++.+ .+..+
T Consensus 37 V~LNVGG~~F~T~~~TL~~~P---~S~L~~~~~~~~~~~~~g~yFi---DRdp~~F~~ILnflR~G~l~-~p~~~~~~~l 109 (140)
T 2nz0_B 37 IVLNVSGRRFQTWRTTLERYP---DTLLGSTEKEFFFNEDTKEYFF---DRDPEVFRCVLNFYRTGKLH-YPRYECISAY 109 (140)
T ss_dssp EEEEETTEEEEEEHHHHHTCT---TSTTTSGGGGGSEETTTTEEEE---CSCHHHHHHHHHHHHHSSBC-CCTTSCHHHH
T ss_pred EEEEECCEEEEeeHHHHhcCC---CeeecccCCcccccCCCCeEEE---eCCcHHHHHHHHHHhcCCcC-CCCCcCHHHH
Confidence 999999999999999997532 34554411 1123456777 67999999999999999998 5543 37788
Q ss_pred HHHhchhChHHH
Q 003035 295 LSFANRFCCEEM 306 (855)
Q Consensus 295 l~~A~~~~~~~L 306 (855)
+.-|+.|+|+.+
T Consensus 110 ~eEa~fy~i~~l 121 (140)
T 2nz0_B 110 DDELAFYGILPE 121 (140)
T ss_dssp HHHHHHHTCCGG
T ss_pred HHHHHHcCCChH
Confidence 999999999986
No 266
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=94.98 E-value=0.0069 Score=53.65 Aligned_cols=80 Identities=9% Similarity=0.066 Sum_probs=60.5
Q ss_pred EEEEEcCeEEEeeehhhhcCCHHHHHhhcCCC----ccCCCCeeEecCCCCCHHHHHHHHHHhccCCCCCCCHH-HHHHH
Q 003035 220 VTFCVRDKEISFVRNKIASLSSPFKAMLYGGF----VESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPG-IVLEL 294 (855)
Q Consensus 220 V~f~v~~~~~~aHr~vLaa~S~~F~~mf~~~~----~E~~~~~I~l~~~~is~~~~~~ll~y~YTg~l~~~~~~-~~~~l 294 (855)
|++.|||..|...+..|.... .+||...- .....+++-| |-+|..|+.||+|+.||++. ++.+ .+..+
T Consensus 2 V~LNVGG~~f~t~~~TL~~~p---~s~L~~~~~~~~~~~~~~~~Fi---DRdp~~F~~ILnflR~g~l~-~p~~~~~~~l 74 (105)
T 1nn7_A 2 IVLNVSGTRFQTWQDTLERYP---DTLLGSSERDFFYHPETQQYFF---DRDPDIFRHILNFYRTGKLH-YPRHECISAY 74 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSC---SSSTTSGGGGGGEEGGGTEEEE---CSCTTTHHHHHHHHHHSCBC-CCTTSCHHHH
T ss_pred EEEEECCEEEEEeHHHHhcCC---CccccccCCcccccCCCCcEEE---eCCcHHHHHHHHHHhcCCCC-CCCCcCHHHH
Confidence 789999999999999997543 24554411 1123456777 67999999999999999997 5543 36788
Q ss_pred HHHhchhChHHH
Q 003035 295 LSFANRFCCEEM 306 (855)
Q Consensus 295 l~~A~~~~~~~L 306 (855)
+.-|+.|+++.+
T Consensus 75 ~~Ea~fy~i~~l 86 (105)
T 1nn7_A 75 DEELAFFGLIPE 86 (105)
T ss_dssp HHHHHHHTCCSC
T ss_pred HHHHHHcCCCHH
Confidence 899999999875
No 267
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=94.97 E-value=0.013 Score=51.29 Aligned_cols=84 Identities=8% Similarity=0.006 Sum_probs=60.1
Q ss_pred EEEEEcCeEEEeeehhhhcCCH-HHHHhhcC-CCccCCCCeeEecCCCCCHHHHHHHHHHhcc-CCCCCCCHH-HHHHHH
Q 003035 220 VTFCVRDKEISFVRNKIASLSS-PFKAMLYG-GFVESKRKTIDFSHDGVSVEGLRAVEVYTRT-SRVDLFCPG-IVLELL 295 (855)
Q Consensus 220 V~f~v~~~~~~aHr~vLaa~S~-~F~~mf~~-~~~E~~~~~I~l~~~~is~~~~~~ll~y~YT-g~l~~~~~~-~~~~ll 295 (855)
|++.|||..|...+..|...-. .+.+|+.. .+.....+++-| |-+|..|+.||+|+.| |++. ++.+ .+..++
T Consensus 3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFi---DRdp~~F~~ILnflR~~G~l~-~p~~~~~~~~~ 78 (100)
T 1t1d_A 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFF---DRNRPSFDAILYFYQSGGRLR-RPVNVPLDVFS 78 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEE---CSCSTTHHHHHHHHHTTSCCC-CCTTSCHHHHH
T ss_pred EEEEECCEEEEeeHHHHhcCCCccccchhccccccCCCceeEEE---cCChHHHHHHHHHHhcCCccc-CCCCCCHHHHH
Confidence 8899999999999999964311 12223321 111234557777 6799999999999999 8987 4433 457889
Q ss_pred HHhchhChHHHH
Q 003035 296 SFANRFCCEEMK 307 (855)
Q Consensus 296 ~~A~~~~~~~Lk 307 (855)
.-|..|+++.+.
T Consensus 79 ~Ea~fy~i~~~~ 90 (100)
T 1t1d_A 79 EEIKFYELGENA 90 (100)
T ss_dssp HHHHHTTCCHHH
T ss_pred HHHHHcCCCHHH
Confidence 999999998743
No 268
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=94.89 E-value=0.25 Score=54.26 Aligned_cols=115 Identities=11% Similarity=-0.065 Sum_probs=83.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC----C--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc----CCh----HHH
Q 003035 645 RQSLLLLRLNCQKAAMRCLRLARNHS----S--SEHERLVYEGWILYDTGHREEALSRAEKSISIE----RTF----EAF 710 (855)
Q Consensus 645 ~~a~~l~~~g~~~~A~~~l~~al~~~----p--~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~----p~~----~a~ 710 (855)
++|.+|+..|+|.+|.+.+.+.++.- . .-.+++.....+|..+|++.++.+.+.++.... ++. ...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 77889999999999999998887632 1 224566778889999999999999999987653 332 444
Q ss_pred HHHHHHHH-HCCCCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCC
Q 003035 711 FLKAYILA-DTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGK 763 (855)
Q Consensus 711 ~~lg~~~~-~~g~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~ 763 (855)
..-|..+. ..++|.+|... |-++.+...+.-.|. ++...++.+-.-.++
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~----F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSY----FYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHH----HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhhHHHHHhccCHHHHHHH----HHHHHhcccccccHHHHHHHHHHHHHHHHcCC
Confidence 55688888 89999999999 777764443333343 555556666555554
No 269
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.88 E-value=0.2 Score=46.44 Aligned_cols=73 Identities=7% Similarity=0.025 Sum_probs=64.1
Q ss_pred CCcHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhccCCh--HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCC
Q 003035 671 SSEHERLVYEGWILYDTGHR---EEALSRAEKSISIERTF--EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGL 745 (855)
Q Consensus 671 p~~~~~~~~lg~~~~~~g~~---~eAl~~~~kal~~~p~~--~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~ 745 (855)
.-.+++.|++||.+....+. .+++..++..+...|.. +.+|.+|..+++.|+|.+|..+ .+..+ +.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y----~d~lL-----~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRY----VDTLF-----EH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHH----HHHHH-----HT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHH----HHHHH-----hc
Confidence 45789999999999998865 47999999999999966 9999999999999999999999 99999 77
Q ss_pred CHH--HHHH
Q 003035 746 RKG--QALN 752 (855)
Q Consensus 746 ~p~--~a~~ 752 (855)
.|+ ++..
T Consensus 107 eP~n~QA~~ 115 (144)
T 1y8m_A 107 ERNNKQVGA 115 (144)
T ss_dssp CCCCHHHHH
T ss_pred CCCcHHHHH
Confidence 776 5443
No 270
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=94.54 E-value=0.5 Score=51.88 Aligned_cols=164 Identities=16% Similarity=0.057 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH-----HHHHHHHHH-CCCHHHHHHHHHHHHhccC----Ch-H--
Q 003035 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERL-----VYEGWILYD-TGHREEALSRAEKSISIER----TF-E-- 708 (855)
Q Consensus 642 ~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~-----~~lg~~~~~-~g~~~eAl~~~~kal~~~p----~~-~-- 708 (855)
+.+.+|.+|...|++++-...+.......+..+-+. ..+-..+.. .+..+.-+....++++... .+ .
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999988888877665544433332 222222222 3455666666666665432 22 2
Q ss_pred HHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCC-HH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----c
Q 003035 709 AFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR-KG---QALNNLGSIYVECGKLDQAENCYINALDIK-----H 779 (855)
Q Consensus 709 a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~-p~---~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~-----~ 779 (855)
.-..+|..|...|+|.+|.+...++.+..- ..+ +. +.+..-..+|...|++.++...|.+|.... +
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~-----~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~ 175 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELK-----KLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCP 175 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHT-----TSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-----ccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCC
Confidence 233789999999999999999433344333 222 23 888888999999999999999999998655 3
Q ss_pred H----HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHc
Q 003035 780 T----RAHQGLARVYY-LKNELKAAYDEMTKLLEKA 810 (855)
Q Consensus 780 ~----~a~~~lg~~~~-~~g~~~~A~~~~~kal~~~ 810 (855)
| .....-|..+. ..++|.+|...|-++++-.
T Consensus 176 p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 176 PKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 3 33455688888 7999999999999998654
No 271
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.05 E-value=1.8 Score=51.45 Aligned_cols=59 Identities=15% Similarity=-0.001 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 003035 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKS 700 (855)
Q Consensus 642 ~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~ka 700 (855)
++..++..++..|+++-|++.-++|....|.+-..|+.|+.+|..+|+|+.|+-.+.-.
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 45567888889999999999999999999999999999999999999999999766443
No 272
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=92.14 E-value=21 Score=41.40 Aligned_cols=121 Identities=9% Similarity=0.008 Sum_probs=61.5
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhccCCh-----HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 003035 680 EGWILYDTGHREEALSRAEKSISIERTF-----EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNL 754 (855)
Q Consensus 680 lg~~~~~~g~~~eAl~~~~kal~~~p~~-----~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~~a~~~L 754 (855)
.+......++.+.|...+.+..+..+-. .....+|.-+...+...++... +.+.... ..+....-...
T Consensus 220 ~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~----~~~~~~~---~~~~~~~e~~~ 292 (618)
T 1qsa_A 220 VAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKW----RDDAIMR---SQSTSLIERRV 292 (618)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHH----HHHHHHT---CCCHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHH----HHhcccc---CCChHHHHHHH
Confidence 3444444556677777776654322211 1222222223333334455555 5554411 11111122222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003035 755 GSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLE 808 (855)
Q Consensus 755 G~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~ 808 (855)
+. ....|+++.|...|++.-... .....|-+|+++..+|+.++|...|+++..
T Consensus 293 r~-Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 293 RM-ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HH-HHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HH-HHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 33 334577777777776544432 566677777777777777777777776653
No 273
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.76 E-value=2.2 Score=41.15 Aligned_cols=109 Identities=10% Similarity=-0.042 Sum_probs=67.7
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCChHHHHHHHHHH
Q 003035 638 GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYIL 717 (855)
Q Consensus 638 ~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~~a~~~lg~~~ 717 (855)
.|+...|.++ ++.|+++.|.+..+.. ++...|..+|.....+|+++-|...|+++=.. -.+...|
T Consensus 6 ~D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~-------~~L~~Ly 70 (177)
T 3mkq_B 6 QDPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSF-------DKLSFLY 70 (177)
T ss_dssp SCHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH-------HHHHHHH
T ss_pred CChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH-------HHHHHHH
Confidence 4556667655 5889999999887664 56888999999999999999999998886332 2233334
Q ss_pred HHCCCCchhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003035 718 ADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYIN 773 (855)
Q Consensus 718 ~~~g~~~~A~~~~~~lle~al~~~~~~~~p~~a~~~LG~~y~~~g~~~~A~~~~~k 773 (855)
.-.|+.+.-.+. -+.+. .. .-++....++...|+++++++.|.+
T Consensus 71 ~~tg~~e~L~kl----a~iA~-----~~---g~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 71 LVTGDVNKLSKM----QNIAQ-----TR---EDFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHTCHHHHHHH----HHHHH-----HT---TCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHhCCHHHHHHH----HHHHH-----HC---ccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445554443332 23332 10 1122233445566777777666643
No 274
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=91.72 E-value=2.9 Score=49.92 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003035 749 QALNNLGSIYVECGKLDQAENCYINA 774 (855)
Q Consensus 749 ~a~~~LG~~y~~~g~~~~A~~~~~kA 774 (855)
..|..+|..+.+.|+++.|+.+|.++
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 56666666666666666666666654
No 275
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.46 E-value=0.62 Score=55.45 Aligned_cols=55 Identities=16% Similarity=0.090 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHH
Q 003035 675 ERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTY 729 (855)
Q Consensus 675 ~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~ 729 (855)
..+..-+..+...|+++-|+...++|+...|+. ..|+.|+.+|..+|+|+.|+-.
T Consensus 338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLt 393 (754)
T 4gns_B 338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFA 393 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHH
Confidence 345555777788999999999999999999998 9999999999999999999988
No 276
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=91.23 E-value=10 Score=35.94 Aligned_cols=30 Identities=13% Similarity=0.190 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 003035 749 QALNNLGSIYVECGKLDQAENCYINALDIK 778 (855)
Q Consensus 749 ~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~ 778 (855)
-.++.+|.+..+.|+-++|+.+|...-.+.
T Consensus 115 fFy~l~a~lltq~g~r~EaI~y~~~Sf~~~ 144 (242)
T 3kae_A 115 FFESLLGDLCTLSGYREEGIGHYVRSFGKS 144 (242)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCHHHhhhHhhhhcCCc
Confidence 677789999999999999999999887766
No 277
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.81 E-value=2.9 Score=42.98 Aligned_cols=59 Identities=19% Similarity=0.004 Sum_probs=56.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh
Q 003035 649 LLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (855)
Q Consensus 649 ~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~ 707 (855)
-+++.|++++|++.....++.+|.++.....+-.++.-.|+++.|.+.++-+.+++|+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 35788999999999999999999999999999999999999999999999999999987
No 278
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=89.89 E-value=2.8 Score=39.76 Aligned_cols=66 Identities=11% Similarity=0.096 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHc--c--CCC--------------HhH-HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003035 517 PYKYRAVAKMEEGQIRAAISEIDRIIV--F--KLS--------------VDC-LELRAWLFIAADDYESALRDTLALLAL 577 (855)
Q Consensus 517 a~~~~a~~~~~~~~~~~A~~~~~k~l~--~--~p~--------------~~~-l~lra~~y~~~gd~~~A~~~~~~aL~~ 577 (855)
+-++.+.+|-..+++..|+..++++|. . +|+ .+. ..+.|.+..+.|+-++|+..+......
T Consensus 64 s~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 64 SKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 346678899999999999999999993 2 232 122 345799999999999999999999998
Q ss_pred CCchh
Q 003035 578 ESNYM 582 (855)
Q Consensus 578 ~P~~~ 582 (855)
+|-..
T Consensus 144 ~~lf~ 148 (242)
T 3kae_A 144 SFLFS 148 (242)
T ss_dssp CCCHH
T ss_pred ccccc
Confidence 88654
No 279
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.42 E-value=2.1 Score=44.01 Aligned_cols=127 Identities=12% Similarity=0.038 Sum_probs=80.7
Q ss_pred HHHHhCCHHHHHHHHHHHHccCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchhhhhcccchhHHHHHHHHHhh
Q 003035 524 AKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVR 602 (855)
Q Consensus 524 ~~~~~~~~~~A~~~~~k~l~~~p-~~~~l~lra~~y~~~gd~~~A~~~~~~aL~~~P~~~~~~~~~~~~~l~~ll~~~~~ 602 (855)
.+++.|+.++|++.....++-+| +.+.......++.-.|+++.|...++.+.+++|+..... ..+..++.....
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a-----~~yr~lI~aE~~ 80 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA-----SQLRHLVKAAQA 80 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHH-----HHHHHHHHHHHH
Confidence 45678889999999999998888 566667777888889999999999999999999864211 111111111100
Q ss_pred ccChhhhHHHHhhhcccccccchHHHHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 003035 603 SWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE 673 (855)
Q Consensus 603 ~~~~a~~~~~~~~~~~~~~d~~al~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~ 673 (855)
. ..+|.-.....- + ..|.........++.....|+.++|.+.-.+|++..|..
T Consensus 81 --R-----~~vfaG~~~P~~----------~-g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 81 --R-----KDFAQGAATAKV----------L-GENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp --H-----HHHTTSCCCEEC----------C-CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred --H-----HHHHcCCCCCCC----------C-CCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 0 011111000000 0 112233444556777888999999999999998887653
No 280
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.13 E-value=5.9 Score=49.86 Aligned_cols=138 Identities=9% Similarity=0.006 Sum_probs=82.7
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------------------cCC-h-
Q 003035 650 LLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI--------------------ERT-F- 707 (855)
Q Consensus 650 l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~--------------------~p~-~- 707 (855)
+...|.++-|.+ .+...|.++...|.+|.++...|++++|..+|+++-.. .+. .
T Consensus 822 l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 897 (1139)
T 4fhn_B 822 LFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNL 897 (1139)
T ss_dssp HHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCS
T ss_pred HHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccccccc
Confidence 455555555443 33455666667788888888888888888888776221 111 1
Q ss_pred --HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-cHH
Q 003035 708 --EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG---QALNNLGSIYVECGKLDQAENCYINALDIK-HTR 781 (855)
Q Consensus 708 --~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~---~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~-~~~ 781 (855)
..|+.....+.+.+.++.+++. -+.||+.... -+++ ..|.++=..+.+.|+|++|...+...-... ...
T Consensus 898 l~~YY~hv~~LFe~~~~~~~vi~f----a~lAi~~~~~-~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~ 972 (1139)
T 4fhn_B 898 LSCYYLHLSKKLFEESAYIDALEF----SLLADASKET-DDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKS 972 (1139)
T ss_dssp SHHHHHHHHHHHHHTSCCHHHHHH----HHHHHHHCCS-CCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHH----HHHHHHhccC-CChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHH
Confidence 2344455666777777777777 6666643322 2222 467777777788888888877775544333 334
Q ss_pred HHHHHHHHHHHcCCH
Q 003035 782 AHQGLARVYYLKNEL 796 (855)
Q Consensus 782 a~~~lg~~~~~~g~~ 796 (855)
.+..+-..++..|..
T Consensus 973 cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 973 CLLDFVNQLTKQGKI 987 (1139)
T ss_dssp HHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHhCCCh
Confidence 444454445554444
No 281
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=87.86 E-value=2 Score=48.67 Aligned_cols=77 Identities=14% Similarity=-0.004 Sum_probs=66.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHH
Q 003035 643 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILAD 719 (855)
Q Consensus 643 ~~~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~ 719 (855)
...+|.+......+..|..+|.+|..+.|++...++.+|.+....|+.-+|+-+|-+++.....+ .+..++...+..
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 44567777777888999999999999999999999999999999999999999999999876666 777777766654
No 282
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.31 E-value=10 Score=41.26 Aligned_cols=58 Identities=9% Similarity=-0.039 Sum_probs=52.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 003035 645 RQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS 702 (855)
Q Consensus 645 ~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~ 702 (855)
.++..++..|++.+|+..++.++..+|-+..++..+-.+++..|+..+|++.|++.-+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566778999999999999999999999999999999999999999999999988644
No 283
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.32 E-value=22 Score=39.43 Aligned_cols=184 Identities=15% Similarity=0.043 Sum_probs=112.9
Q ss_pred cCCHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHH---HHHHHHHH-CC
Q 003035 653 LNCQKAAMRCLRLARNH------SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFF---LKAYILAD-TN 721 (855)
Q Consensus 653 ~g~~~~A~~~l~~al~~------~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~---~lg~~~~~-~g 721 (855)
.|++++|++.+....+. .+....+...+..++...|+++.....+.-........ .+.- ....-+.. ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 35677777766443332 23456677888899999999998877765444433222 2221 22222222 22
Q ss_pred CCchhHHHHHHHHHHHhcCCCC-CCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--------cHHHHHHHHH
Q 003035 722 LDPESSTYVIQLLEEALRCPSD-GLRK----GQALNNLGSIYVECGKLDQAENCYINALDIK--------HTRAHQGLAR 788 (855)
Q Consensus 722 ~~~~A~~~~~~lle~al~~~~~-~~~p----~~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--------~~~a~~~lg~ 788 (855)
..+. ...+.+.+ .+....+ .+.- ......|+.+|.+.|++.+|.+.+.....-- -...+....+
T Consensus 109 ~~d~--~~~~~~i~-~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 109 SLDL--NTRISVIE-TIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp TTHH--HHHHHHHH-CCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred chhH--HHHHHHHH-HHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 2221 11011121 1211111 1111 1566789999999999999999998875321 3567778889
Q ss_pred HHHHcCCHHHHHHHHHHHHH---HccCCHH----HHHHHhh----cCCHHHHHHHHHHHHhc
Q 003035 789 VYYLKNELKAAYDEMTKLLE---KAQYSAS----AFEKRSE----YSDREMAKNDLNMATQL 839 (855)
Q Consensus 789 ~~~~~g~~~~A~~~~~kal~---~~p~~~~----a~~~lg~----~g~~eeA~~~~~kAl~l 839 (855)
++...+|+.+|...++++-. ..+..+. ++...|. .++|.+|-.+|..+++.
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 99999999999999998743 2333433 3444444 79999999999888764
No 284
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.17 E-value=1.8 Score=48.90 Aligned_cols=129 Identities=11% Similarity=0.018 Sum_probs=56.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH-----------hcCCCcHHHHHHHHHHHHHCCCHHHHHHHHH----------HHH--
Q 003035 645 RQSLLLLRLNCQKAAMRCLRLAR-----------NHSSSEHERLVYEGWILYDTGHREEALSRAE----------KSI-- 701 (855)
Q Consensus 645 ~~a~~l~~~g~~~~A~~~l~~al-----------~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~----------kal-- 701 (855)
..-..++..+++++|.++-...+ .+++=.+-.||+.+.++...|+..+...... .++
T Consensus 141 L~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rt 220 (523)
T 4b4t_S 141 LVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKI 220 (523)
T ss_dssp --------------------------------------------------------------CHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHH
Confidence 33344667888888877665443 1244456778888888888887765432211 111
Q ss_pred ---hccCCh--HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHH
Q 003035 702 ---SIERTF--EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG---QALNNLGSIYVECGKLDQAENCYIN 773 (855)
Q Consensus 702 ---~~~p~~--~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~---~a~~~LG~~y~~~g~~~~A~~~~~k 773 (855)
..+++. ..++.+-..|...+.++.|... ..++. .|....... ..++.+|.++.-+++|.+|.+++..
T Consensus 221 a~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~l----vsk~~-fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~ 295 (523)
T 4b4t_S 221 ASLKHDNETKAMLINLILRDFLNNGEVDSASDF----ISKLE-YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIA 295 (523)
T ss_dssp CCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHH----HHHHC-SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhcccCcchhHHHHHHHHHHHHccCcHHHHHHH----HhcCc-CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 224444 6677788999999999999999 88886 222212222 6778899999999999999999999
Q ss_pred HHhcc
Q 003035 774 ALDIK 778 (855)
Q Consensus 774 AL~~~ 778 (855)
|+...
T Consensus 296 A~rka 300 (523)
T 4b4t_S 296 AIRKA 300 (523)
T ss_dssp HTSSC
T ss_pred HHHhC
Confidence 99753
No 285
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=86.00 E-value=4.2 Score=49.67 Aligned_cols=134 Identities=9% Similarity=-0.038 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc---cHHHH
Q 003035 708 EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDIK---HTRAH 783 (855)
Q Consensus 708 ~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~-~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~---~~~a~ 783 (855)
..|..+-..|.+.|+.++|... |++..+.......|+ ..|+.|-..|.+.|+.++|.+.|++..+.. |...|
T Consensus 128 ~TynaLIdglcK~G~leeA~~L----f~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHL----LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHH----HHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHH----HHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 5566667777777788877777 655431111134566 889999999999999999999999998877 88899
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHHHccCCHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcccc
Q 003035 784 QGLARVYYLKNE-LKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPY 847 (855)
Q Consensus 784 ~~lg~~~~~~g~-~~~A~~~~~kal~~~p~~~~a~~~lg~~g~~eeA~~~~~kAl~l~P~~~~~~ 847 (855)
..+-..+.+.|+ .++|.+.+++..+..-. |+....-+... -++=...++-+-+.+|+.--+|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~-PD~vtY~~ll~-~~eR~~vL~~Vrkv~P~f~p~~ 266 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLK-LQALFTAVLLS-EEDRATVLKAVHKVKPTFSLPP 266 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCC-SHHHHHHSCCC-HHHHHHHHHHHGGGCCCCCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCC-CChhhcccccC-hhhHHHHHHHHHHhCcccCCCC
Confidence 999889999997 57889999988876422 33322222221 2222244444455577665443
No 286
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=85.95 E-value=20 Score=37.66 Aligned_cols=27 Identities=22% Similarity=0.186 Sum_probs=20.7
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHH
Q 003035 638 GKSFLRFRQSLLLLRLNCQKAAMRCLR 664 (855)
Q Consensus 638 ~~~~~~~~~a~~l~~~g~~~~A~~~l~ 664 (855)
.++.+|...|..+.+.|++.+|..+|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 467778888888888888888777763
No 287
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.72 E-value=40 Score=35.78 Aligned_cols=27 Identities=19% Similarity=0.144 Sum_probs=20.4
Q ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHH
Q 003035 671 SSEHERLVYEGWILYDTGHREEALSRA 697 (855)
Q Consensus 671 p~~~~~~~~lg~~~~~~g~~~eAl~~~ 697 (855)
-.+++.+..+|..+...+++.+|..+|
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 356777778888888888877777776
No 288
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.40 E-value=5.2 Score=43.71 Aligned_cols=86 Identities=7% Similarity=-0.139 Sum_probs=68.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCc----------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC
Q 003035 649 LLLRLNCQKAAMRCLRLARNHSSSE----------------------HERLVYEGWILYDTGHREEALSRAEKSISIERT 706 (855)
Q Consensus 649 ~l~~~g~~~~A~~~l~~al~~~p~~----------------------~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~ 706 (855)
.....|+.++|.+.+++|+.+.... ..+...++..+...|++++|+..+++++..+|-
T Consensus 124 ~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~ 203 (388)
T 2ff4_A 124 HAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPY 203 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3345677888888888888764211 012234667788999999999999999999999
Q ss_pred h-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHh
Q 003035 707 F-EAFFLKAYILADTNLDPESSTYVIQLLEEAL 738 (855)
Q Consensus 707 ~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al 738 (855)
+ .++..+-.+|...|+..+|+.. |++.-
T Consensus 204 ~E~~~~~lm~al~~~Gr~~~Al~~----y~~~r 232 (388)
T 2ff4_A 204 REPLWTQLITAYYLSDRQSDALGA----YRRVK 232 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHH----HHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHH----HHHHH
Confidence 9 8999999999999999999998 77664
No 289
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=85.09 E-value=2.3 Score=48.08 Aligned_cols=74 Identities=18% Similarity=0.085 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh
Q 003035 749 QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE 822 (855)
Q Consensus 749 ~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~ 822 (855)
..+..||++..-...++.|..+|.+|+.+. +...++.+|.+....|+.-+|+-+|.+++.....++.+..++..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~ 228 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQK 228 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHH
Confidence 345667777777777788888888888877 77788888888877787777887777777766667777666655
No 290
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=85.07 E-value=7.3 Score=46.34 Aligned_cols=46 Identities=13% Similarity=-0.024 Sum_probs=31.0
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 003035 650 LLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKS 700 (855)
Q Consensus 650 l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~ka 700 (855)
.+..|++++|.+..+ ..++...|..+|..+...|+++.|+..|.++
T Consensus 662 ~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 356677777766543 2345667777777777777777777777765
No 291
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.95 E-value=0.8 Score=51.08 Aligned_cols=88 Identities=6% Similarity=-0.067 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC---Ch----HHHH
Q 003035 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSS---SEHERLVYEGWILYDTGHREEALSRAEKSISIER---TF----EAFF 711 (855)
Q Consensus 642 ~~~~~a~~l~~~g~~~~A~~~l~~al~~~p---~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p---~~----~a~~ 711 (855)
++..+|..+.+.|+++.|.+.|.++..... .-.+.+.....++...+++..+...+.++-.... +. ....
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 455666666666666666666666655322 2234455555556666666666666666544422 22 1122
Q ss_pred HHHHHHHHCCCCchhHHH
Q 003035 712 LKAYILADTNLDPESSTY 729 (855)
Q Consensus 712 ~lg~~~~~~g~~~~A~~~ 729 (855)
..|.++...++|.+|...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~ 230 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKL 230 (429)
T ss_dssp HHHHGGGGTSCHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHH
Confidence 334444455555555555
No 292
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.07 E-value=8.1 Score=43.03 Aligned_cols=94 Identities=13% Similarity=-0.024 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCC--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----ccCCh----
Q 003035 642 LRFRQSLLLLRLNCQKAAMRCLRLARNH----SSS--EHERLVYEGWILYDTGHREEALSRAEKSIS----IERTF---- 707 (855)
Q Consensus 642 ~~~~~a~~l~~~g~~~~A~~~l~~al~~----~p~--~~~~~~~lg~~~~~~g~~~eAl~~~~kal~----~~p~~---- 707 (855)
+...++.++...|++.+|...+.....- .+. -.+.+.....++...+++.+|...+.++.. ..+..
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 4467888999999999999998887531 111 145667778889999999999999988642 22222
Q ss_pred HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhc
Q 003035 708 EAFFLKAYILADTNLDPESSTYVIQLLEEALR 739 (855)
Q Consensus 708 ~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~ 739 (855)
..+...|..+...++|.+|..+ |..+.+
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~----y~e~~~ 246 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQY----LQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHH----HHHHHh
Confidence 4556778888889999999998 877763
No 293
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=80.65 E-value=21 Score=34.26 Aligned_cols=133 Identities=12% Similarity=0.024 Sum_probs=88.4
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHHHHH
Q 003035 673 EHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQAL 751 (855)
Q Consensus 673 ~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~~a~ 751 (855)
+++..|.+ ....|+++.|.+..++. ++ .-|..+|..-...|+++-|... |+++- + +
T Consensus 7 D~~~rF~L---AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~c----y~~~~-----D------~ 63 (177)
T 3mkq_B 7 DPHIRFDL---ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMI----YQTQH-----S------F 63 (177)
T ss_dssp CHHHHHHH---HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHH----HHHTT-----C------H
T ss_pred ChHHHHHH---HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHH----HHHhC-----C------H
Confidence 44455543 35789999998887765 44 7899999999999999998888 88776 3 3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh-cCCHHHHH
Q 003035 752 NNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE-YSDREMAK 830 (855)
Q Consensus 752 ~~LG~~y~~~g~~~~A~~~~~kAL~~~~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~-~g~~eeA~ 830 (855)
..+..+|.-.|+.++=.+.-+.|....+.... ..++..+|+++++++.|.+.= ..+.++. .+. .|--+.|.
T Consensus 64 ~~L~~Ly~~tg~~e~L~kla~iA~~~g~~n~a---f~~~l~lGdv~~~i~lL~~~~----r~~eA~~-~A~t~g~~~~a~ 135 (177)
T 3mkq_B 64 DKLSFLYLVTGDVNKLSKMQNIAQTREDFGSM---LLNTFYNNSTKERSSIFAEGG----SLPLAYA-VAKANGDEAAAS 135 (177)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHH---HHHHHHHTCHHHHHHHHHHTT----CHHHHHH-HHHHTTCHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHCccHHHH---HHHHHHcCCHHHHHHHHHHCC----ChHHHHH-HHHHcCcHHHHH
Confidence 34556677777776655555555444433222 234567799999998885432 2344433 333 78888888
Q ss_pred HHHHHH
Q 003035 831 NDLNMA 836 (855)
Q Consensus 831 ~~~~kA 836 (855)
+..+.+
T Consensus 136 ~~~~~~ 141 (177)
T 3mkq_B 136 AFLEQA 141 (177)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 776654
No 294
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.46 E-value=1.8 Score=48.85 Aligned_cols=132 Identities=13% Similarity=0.112 Sum_probs=61.2
Q ss_pred HHHHHCCCHHHHHHHHHHHHh---c---cC-----Ch-HHHHHHHHHHHHCCCCchhHH------HHHHHHHHHhcCCCC
Q 003035 682 WILYDTGHREEALSRAEKSIS---I---ER-----TF-EAFFLKAYILADTNLDPESST------YVIQLLEEALRCPSD 743 (855)
Q Consensus 682 ~~~~~~g~~~eAl~~~~kal~---~---~p-----~~-~a~~~lg~~~~~~g~~~~A~~------~~~~lle~al~~~~~ 743 (855)
..+.+.+++++|...-...+. + +. =. ..||..+.++...|+...... .+...+-.+++...-
T Consensus 144 i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~l 223 (523)
T 4b4t_S 144 LFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASL 223 (523)
T ss_dssp -----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCS
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhc
Confidence 345678899999888776652 1 11 12 667888888887777655211 111113333333322
Q ss_pred CCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCC
Q 003035 744 GLRKG---QALNNLGSIYVECGKLDQAENCYINALDIK-------HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS 813 (855)
Q Consensus 744 ~~~p~---~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~-------~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~ 813 (855)
..+.. ..++.+=..|...+.++.|.....++.-.. ...-++.+|+++..+++|.+|.+.+..|+...|.+
T Consensus 224 r~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 224 KHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp CSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred ccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 33333 788888999999999999999999995332 23456778999999999999999999999987754
No 295
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.42 E-value=3.8 Score=45.51 Aligned_cols=102 Identities=14% Similarity=0.045 Sum_probs=80.4
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC--h--HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCCCCCHH
Q 003035 673 EHERLVYEGWILYDTGHREEALSRAEKSISIERT--F--EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG 748 (855)
Q Consensus 673 ~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~~p~--~--~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~~~~p~ 748 (855)
-..++..+|..+++.|++++|.+.|.++...-.. . +.++....++...+++..+... ++++.......-++.
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~----~~ka~~~~~~~~d~~ 205 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEK----LEAVNSMIEKGGDWE 205 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHH----HHHHHHHHTTCCCTH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHH----HHHHHHhhhcCCCHH
Confidence 3456788999999999999999999998876433 3 8888888889999999999999 888875444444444
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 003035 749 ---QALNNLGSIYVECGKLDQAENCYINALDIK 778 (855)
Q Consensus 749 ---~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~ 778 (855)
.....-|.++...++|.+|...|-.+..-.
T Consensus 206 ~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 206 RRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 455556777888899999999998887766
No 296
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=78.09 E-value=9.2 Score=46.77 Aligned_cols=92 Identities=9% Similarity=-0.119 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--cCChHHHHHHH
Q 003035 642 LRFRQSLLLLRLNCQKAAMRCLRLARN-----HSSSEHERLVYEGWILYDTGHREEALSRAEKSISI--ERTFEAFFLKA 714 (855)
Q Consensus 642 ~~~~~a~~l~~~g~~~~A~~~l~~al~-----~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~--~p~~~a~~~lg 714 (855)
.+..+-..+.+.|+.++|...|....+ ..| +...|..+-..+.+.|+.++|...|++..+. .|+...|..+-
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 344444567777778888777765432 233 4567777777777777777777777777653 46556666666
Q ss_pred HHHHHCCCC-chhHHHHHHHHHHHh
Q 003035 715 YILADTNLD-PESSTYVIQLLEEAL 738 (855)
Q Consensus 715 ~~~~~~g~~-~~A~~~~~~lle~al 738 (855)
..+.+.|+. ++|... |++..
T Consensus 208 ~glcK~G~~~e~A~~L----l~EM~ 228 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERC----LEQMS 228 (1134)
T ss_dssp HHHHHHTCCHHHHHHH----HHHHH
T ss_pred HHHHhCCCcHHHHHHH----HHHHH
Confidence 667777765 455666 66665
No 297
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=78.06 E-value=74 Score=33.67 Aligned_cols=85 Identities=15% Similarity=0.050 Sum_probs=48.8
Q ss_pred CCChHHHHHHH-HHHHHcCCHHHHHHHHHHHHh----cCC------------------CcHHHH-HHHHHHHHHCCC---
Q 003035 637 PGKSFLRFRQS-LLLLRLNCQKAAMRCLRLARN----HSS------------------SEHERL-VYEGWILYDTGH--- 689 (855)
Q Consensus 637 p~~~~~~~~~a-~~l~~~g~~~~A~~~l~~al~----~~p------------------~~~~~~-~~lg~~~~~~g~--- 689 (855)
|.....+..++ +.|+-.++...|...+....+ .+| ..+... ..+-..-...+.
T Consensus 183 ~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q~~~~~l 262 (336)
T 3lpz_A 183 SHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGSPDL 262 (336)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHHSCCHHH
T ss_pred CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHHhcCCHHH
Confidence 33444444444 446778888888775544442 222 233322 122233334453
Q ss_pred HHHHHHHHHHHHhccC-Ch-HHHHHHHHHHHHCC
Q 003035 690 REEALSRAEKSISIER-TF-EAFFLKAYILADTN 721 (855)
Q Consensus 690 ~~eAl~~~~kal~~~p-~~-~a~~~lg~~~~~~g 721 (855)
|..-...|+..++.+| .+ ...-.+|..|+...
T Consensus 263 F~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi~ 296 (336)
T 3lpz_A 263 FRQLKSKYEANLNELNGIWDTALELIAEMYFGIQ 296 (336)
T ss_dssp HHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCCC
Confidence 5556677777788777 66 77788888888764
No 298
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=76.95 E-value=1.4e+02 Score=36.26 Aligned_cols=121 Identities=15% Similarity=0.060 Sum_probs=59.7
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcc---CCh---HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCCCC-CC---CH
Q 003035 678 VYEGWILYDTGHREEALSRAEKSISIE---RTF---EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSD-GL---RK 747 (855)
Q Consensus 678 ~~lg~~~~~~g~~~eAl~~~~kal~~~---p~~---~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~~~-~~---~p 747 (855)
..+|.++ .|+.++++..+.+.+... ... .+.+.+|.++...++ ++... +...+..... .- .+
T Consensus 380 aSLGlIh--~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--~~~~l----L~~~L~~~~~~~~~~~~~ 451 (963)
T 4ady_A 380 ASLGVIH--KGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--DTTDY----LKNIIVENSGTSGDEDVD 451 (963)
T ss_dssp HHHHHHT--SSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--HHHHH----HHHHHHHHSSCCSCHHHH
T ss_pred HHhhhhc--cCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--HHHHH----HHHHHcCccccccccccH
Confidence 3445443 355566777766666421 111 556666666655553 45555 4444421110 00 01
Q ss_pred H---HHHHHHHHHHHHcCCHHHHHHHHHHHHhccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003035 748 G---QALNNLGSIYVECGKLDQAENCYINALDIKH----TRAHQGLARVYYLKNELKAAYDEMTKLL 807 (855)
Q Consensus 748 ~---~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~~----~~a~~~lg~~~~~~g~~~~A~~~~~kal 807 (855)
. .+-..||.+|...++ +++.+.+...+.-++ ..+-+.+|.++...|+-+.....+..+.
T Consensus 452 ~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~ 517 (963)
T 4ady_A 452 VLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQ 517 (963)
T ss_dssp HHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHh
Confidence 1 444566666665554 345566666665442 2344556666666666544444444433
No 299
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=75.06 E-value=1.3e+02 Score=34.83 Aligned_cols=177 Identities=11% Similarity=0.014 Sum_probs=94.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHH---HHHHHHHHCCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCC
Q 003035 647 SLLLLRLNCQKAAMRCLRLARNHSSS-EHERLV---YEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTN 721 (855)
Q Consensus 647 a~~l~~~g~~~~A~~~l~~al~~~p~-~~~~~~---~lg~~~~~~g~~~eAl~~~~kal~~~p~~-~a~~~lg~~~~~~g 721 (855)
+...+..++.+.|...+.......+- ..+... .+|.-+...+...++...+.+......+. ..-...+.++ ..|
T Consensus 221 ~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Al-r~~ 299 (618)
T 1qsa_A 221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMAL-GTG 299 (618)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHH-HHT
T ss_pred HHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHH-HCC
Confidence 33344445667777777665433222 222222 22323333343456666666655544444 3333334444 347
Q ss_pred CCchhHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhccc--------------------
Q 003035 722 LDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIKH-------------------- 779 (855)
Q Consensus 722 ~~~~A~~~~~~lle~al~~~~~~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~~-------------------- 779 (855)
+++.|... |++.- ..... ...+-+|..+...|+.++|...|+++.+-.+
T Consensus 300 d~~~a~~~----~~~l~-----~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~ 370 (618)
T 1qsa_A 300 DRRGLNTW----LARLP-----MEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDK 370 (618)
T ss_dssp CHHHHHHH----HHHSC-----TTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCC
T ss_pred CHHHHHHH----HHHcc-----ccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCC
Confidence 77777777 66544 21111 5556667777777777777777777654210
Q ss_pred ----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHhh----cCCHHHHHHHHHH
Q 003035 780 ----------TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNM 835 (855)
Q Consensus 780 ----------~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~lg~----~g~~eeA~~~~~k 835 (855)
.......+..+...|....|...+..+++.. ++.-...++. .|.++.++....+
T Consensus 371 ~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 371 APQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIA 438 (618)
T ss_dssp CCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 0112345667778888888888887776532 2232233333 7777777655543
No 300
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.70 E-value=3.4 Score=36.05 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHhchhChHHHHHHHHHHHHhhcC
Q 003035 286 FCPGIVLELLSFANRFCCEEMKSACDAHLASLVG 319 (855)
Q Consensus 286 ~~~~~~~~ll~~A~~~~~~~Lk~~C~~~l~~~l~ 319 (855)
++++|++.++.+|+.|+++.|+..|.+|+.....
T Consensus 8 L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~ 41 (105)
T 2eqx_A 8 VQVGNCLQVMWLADRHSDPELYTAAKHCAKTHLA 41 (105)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999987765
No 301
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=71.58 E-value=3.4 Score=35.86 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=30.4
Q ss_pred cCChhhHHHHHHHHHHhccHHHHHHHHHHHHhhh
Q 003035 318 VGDIEDALILIDYGLEERATLLVASCLQVLLREL 351 (855)
Q Consensus 318 l~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~ 351 (855)
++ .+|+..++..|..++.+.|.+.|.+|+.+++
T Consensus 77 ~~-~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l 109 (109)
T 2vkp_A 77 LE-ADTVLATLYAAKKYIVPALAKACVNFLETSL 109 (109)
T ss_dssp CC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CC-HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC
Confidence 45 7999999999999999999999999998874
No 302
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=70.44 E-value=30 Score=43.36 Aligned_cols=100 Identities=10% Similarity=-0.027 Sum_probs=77.2
Q ss_pred HHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------------CCcHHHHHHHHHHHHH
Q 003035 630 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHS-----------------------SSEHERLVYEGWILYD 686 (855)
Q Consensus 630 ~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~~-----------------------p~~~~~~~~lg~~~~~ 686 (855)
...+.--|.++...|.+|.+++..|++++|..+|+++-.-- ...+.-|.....++..
T Consensus 832 ~~l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~ 911 (1139)
T 4fhn_B 832 MQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFE 911 (1139)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHH
T ss_pred HHHhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHH
Confidence 34455567888888999999999999999999998873210 1112334566778889
Q ss_pred CCCHHHHHHHHHHHHhccCCh------HHHHHHHHHHHHCCCCchhHHH
Q 003035 687 TGHREEALSRAEKSISIERTF------EAFFLKAYILADTNLDPESSTY 729 (855)
Q Consensus 687 ~g~~~eAl~~~~kal~~~p~~------~a~~~lg~~~~~~g~~~~A~~~ 729 (855)
.|.++.+++..+.|++..+.. ..|.++=..+.+.|+|++|...
T Consensus 912 ~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~a 960 (1139)
T 4fhn_B 912 ESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVA 960 (1139)
T ss_dssp TSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHH
T ss_pred cCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 999999999999999875432 3567777788999999999988
No 303
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=70.32 E-value=4.2 Score=46.30 Aligned_cols=81 Identities=11% Similarity=0.063 Sum_probs=59.0
Q ss_pred EEEEEcCeEEEeeehhhhcCCHHHHHhhcC-----CCccCCCCeeEecCCCCCHHHHHHHHHHhcc-CCCCCCCHH-HHH
Q 003035 220 VTFCVRDKEISFVRNKIASLSSPFKAMLYG-----GFVESKRKTIDFSHDGVSVEGLRAVEVYTRT-SRVDLFCPG-IVL 292 (855)
Q Consensus 220 V~f~v~~~~~~aHr~vLaa~S~~F~~mf~~-----~~~E~~~~~I~l~~~~is~~~~~~ll~y~YT-g~l~~~~~~-~~~ 292 (855)
|++.|||..|...+..|..- =.+||.. .+.....+++-+ |-+|..|+.+|+|+.| |++. .+.+ .+.
T Consensus 54 v~lNVgG~~f~t~~~tL~~~---p~s~l~~~~~~~~~~~~~~~~~f~---DR~~~~F~~IL~~~r~~g~l~-~p~~~~~~ 126 (514)
T 2r9r_B 54 VVINISGLRFETQLKTLAQF---PETLLGDPKKRMRYFDPLRNEYFF---DRNRPSFDAILYYYQSGGRLR-RPVNVPLD 126 (514)
T ss_dssp EEEEETTEEEEEEHHHHTTS---TTSTTTCHHHHGGGEETTTTEEEE---CSCHHHHHHHHHHHHHTSCCC-CCTTSCHH
T ss_pred EEEEeCCEEEEecHHHHhcC---CCCcccccccCCcccCCCCCCEEE---cCChHHHHHHHHHHhcCCccc-cCCcccHH
Confidence 99999999999999998642 2333322 112234457776 7799999999999999 9997 5444 345
Q ss_pred HHHHHhchhChHHHH
Q 003035 293 ELLSFANRFCCEEMK 307 (855)
Q Consensus 293 ~ll~~A~~~~~~~Lk 307 (855)
.++.=|+.|+++.+.
T Consensus 127 ~~~~E~~f~~i~~~~ 141 (514)
T 2r9r_B 127 IFSEEIRFYELGEEA 141 (514)
T ss_dssp HHHHHHHHTTCCHHH
T ss_pred HHHHHHHhcCCCHHH
Confidence 677888999997643
No 304
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=67.68 E-value=2.2e+02 Score=34.55 Aligned_cols=31 Identities=19% Similarity=0.176 Sum_probs=22.7
Q ss_pred cccchhhHHHHHHHHhhccChhHHHHHHHHHHhh
Q 003035 101 LESDKSMLFIEQYAYLCGLGDAKLLRRCLRSARQ 134 (855)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 134 (855)
+-.+|....|.=..|+=-|||- ..||+-|..
T Consensus 65 ~f~~r~laalvaSkvyy~Lg~~---~~al~yaL~ 95 (963)
T 4ady_A 65 TFSDREMAALIASKVYYNLGEY---ESAVKYALA 95 (963)
T ss_dssp TCTTHHHHHHHHHHHHHHHTCH---HHHHHHHHH
T ss_pred CcchHHHHHHHHHHHheeccch---HHHHHHHHh
Confidence 3357777788888888888886 567766655
No 305
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=54.19 E-value=5.2 Score=36.56 Aligned_cols=35 Identities=11% Similarity=0.018 Sum_probs=31.8
Q ss_pred cCChhhHHHHHHHHHHhccHHHHHHHHHHHHhhhhh
Q 003035 318 VGDIEDALILIDYGLEERATLLVASCLQVLLRELPS 353 (855)
Q Consensus 318 l~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~ 353 (855)
++ .+|+..++..|..++.+.|.+.|.+||.+++..
T Consensus 101 i~-~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~l~~ 135 (138)
T 2z8h_A 101 LS-KDNVDEVCRCVEFLSVHNIEESCFQFLKFKFLD 135 (138)
T ss_dssp CC-TTTHHHHHHHHHHHTCGGGHHHHHHHTTCCCSC
T ss_pred cC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccc
Confidence 45 799999999999999999999999999988753
No 306
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=51.49 E-value=6.1 Score=35.98 Aligned_cols=36 Identities=11% Similarity=-0.016 Sum_probs=28.4
Q ss_pred cCChhhHHHHHHHHHHhccHHHHHHHHHHHHhhhhhh
Q 003035 318 VGDIEDALILIDYGLEERATLLVASCLQVLLRELPSS 354 (855)
Q Consensus 318 l~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~v 354 (855)
++ .+|+..++..|..++.+.|++.|.+|+.+++...
T Consensus 87 i~-~~~v~~ll~~A~~l~i~~L~~~C~~~l~~~l~~~ 122 (135)
T 2yy9_A 87 LT-SGNRDQVLLAAKELRVPEAVELCQSFQPQTSVGQ 122 (135)
T ss_dssp CC-TTTHHHHHHHHHHTTCHHHHHHHHHCCC------
T ss_pred CC-HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccCC
Confidence 45 7999999999999999999999999999888653
No 307
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=51.31 E-value=12 Score=33.41 Aligned_cols=32 Identities=6% Similarity=0.179 Sum_probs=29.2
Q ss_pred cCChhhHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 003035 318 VGDIEDALILIDYGLEERATLLVASCLQVLLRE 350 (855)
Q Consensus 318 l~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~ 350 (855)
++ .+|+..++..|..+..+.|.+.|.+||.++
T Consensus 95 ~~-~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~ 126 (127)
T 1r29_A 95 LR-EGNIMAVMATAMYLQMEHVVDTCRKFIKAS 126 (127)
T ss_dssp CC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred cC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 45 799999999999999999999999999764
No 308
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=51.11 E-value=9.4 Score=35.96 Aligned_cols=34 Identities=12% Similarity=0.156 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHhchhChHHHHHHHHHHHHhhcC
Q 003035 286 FCPGIVLELLSFANRFCCEEMKSACDAHLASLVG 319 (855)
Q Consensus 286 ~~~~~~~~ll~~A~~~~~~~Lk~~C~~~l~~~l~ 319 (855)
++.+++.+++.+|++|.++.|+..|.+|+...+.
T Consensus 132 l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~ 165 (172)
T 3htm_A 132 LSVENAAEILILADLHSADQLKTQAVDFINYHAT 165 (172)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 6778999999999999999999999999998765
No 309
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=49.86 E-value=2.4e+02 Score=29.34 Aligned_cols=28 Identities=14% Similarity=-0.180 Sum_probs=25.1
Q ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHH
Q 003035 671 SSEHERLVYEGWILYDTGHREEALSRAE 698 (855)
Q Consensus 671 p~~~~~~~~lg~~~~~~g~~~eAl~~~~ 698 (855)
-.+++.+..+|..+...|++.+|..+|-
T Consensus 131 ~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 131 FGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 3688999999999999999999998874
No 310
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=48.88 E-value=79 Score=29.34 Aligned_cols=76 Identities=12% Similarity=0.034 Sum_probs=50.9
Q ss_pred HHHHHHHHhcCCCC----CCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHcCCHHHH
Q 003035 730 VIQLLEEALRCPSD----GLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK----HTRAHQGLARVYYLKNELKAA 799 (855)
Q Consensus 730 ~~~lle~al~~~~~----~~~p~--~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~----~~~a~~~lg~~~~~~g~~~~A 799 (855)
+..+++++++...+ ..+|. ..|...+.. .+++.+.|.-..... .+..|-..|..+...|++.+|
T Consensus 47 l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~------~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A 120 (152)
T 4a1g_A 47 LITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEY------NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHA 120 (152)
T ss_dssp HHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTT------BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHh------cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 44557777643322 12222 555555443 234777887776655 667777889999999999999
Q ss_pred HHHHHHHHHHcc
Q 003035 800 YDEMTKLLEKAQ 811 (855)
Q Consensus 800 ~~~~~kal~~~p 811 (855)
.+.|+..++.+.
T Consensus 121 ~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 121 SAVLQRGIQNQA 132 (152)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 999999998643
No 311
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=48.05 E-value=2.3e+02 Score=28.62 Aligned_cols=49 Identities=10% Similarity=0.085 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHh-----ccCCh----HHHHHHHHHHHH-CCCCchhHHHHHHHHHHHhc
Q 003035 691 EEALSRAEKSIS-----IERTF----EAFFLKAYILAD-TNLDPESSTYVIQLLEEALR 739 (855)
Q Consensus 691 ~eAl~~~~kal~-----~~p~~----~a~~~lg~~~~~-~g~~~~A~~~~~~lle~al~ 739 (855)
+.|...|++|.+ +.|.+ ....+.+..|+. .++.++|...+.+.|+.|+.
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~Ai~ 231 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIA 231 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 556667776654 34555 333344444554 78888999988888888873
No 312
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=45.17 E-value=15 Score=32.09 Aligned_cols=30 Identities=7% Similarity=-0.050 Sum_probs=27.6
Q ss_pred cCChhhHHHHHHHHHHhccHHHHHHHHHHHH
Q 003035 318 VGDIEDALILIDYGLEERATLLVASCLQVLL 348 (855)
Q Consensus 318 l~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~ 348 (855)
++ .+|+..++..|..++.+.|.+.|.+|+.
T Consensus 86 ~~-~~~v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 86 LD-SWNVKEIHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp CC-TTTHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred cC-HHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 44 7899999999999999999999999985
No 313
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=44.84 E-value=21 Score=31.40 Aligned_cols=32 Identities=22% Similarity=0.108 Sum_probs=29.0
Q ss_pred cCChhhHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 003035 318 VGDIEDALILIDYGLEERATLLVASCLQVLLRE 350 (855)
Q Consensus 318 l~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~ 350 (855)
++ .+|+..++..|..++.+.|.+.|.+|+.+.
T Consensus 89 ~~-~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~ 120 (121)
T 1buo_A 89 AK-AEDLDDLLYAAEILEIEYLEEQCLKMLETI 120 (121)
T ss_dssp CC-GGGHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHh
Confidence 34 799999999999999999999999998764
No 314
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=44.40 E-value=18 Score=31.87 Aligned_cols=30 Identities=7% Similarity=0.056 Sum_probs=27.6
Q ss_pred cCChhhHHHHHHHHHHhccHHHHHHHHHHHH
Q 003035 318 VGDIEDALILIDYGLEERATLLVASCLQVLL 348 (855)
Q Consensus 318 l~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~ 348 (855)
++ .+|+..++..|..+..+.|++.|.+|+.
T Consensus 88 i~-~~~~~~ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 88 LS-PENVDDVLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp CC-TTTHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cC-HHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 45 7999999999999999999999999974
No 315
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=44.03 E-value=37 Score=27.36 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=23.6
Q ss_pred HHhhhhHhhhhcHHHHHHHHHHHHHhcc
Q 003035 423 HQLGCVMFEREEYKDACYYFEAAADAGH 450 (855)
Q Consensus 423 ~~LG~~~l~~g~~~eA~~~~~~Al~~~~ 450 (855)
..+|..++.+|++++|..+|-+|+...+
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~ 48 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCG 48 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 3789999999999999999999987643
No 316
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=44.03 E-value=32 Score=32.12 Aligned_cols=77 Identities=10% Similarity=0.048 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHHhchhC---------------hHHHHHHHHHHHHhhcCChhhHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 003035 286 FCPGIVLELLSFANRFC---------------CEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRE 350 (855)
Q Consensus 286 ~~~~~~~~ll~~A~~~~---------------~~~Lk~~C~~~l~~~l~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~ 350 (855)
++...+..|+..+.... -..+..-..+|+. ++ .++++.++..|...+...|.+.|.+|+...
T Consensus 49 V~~~iL~kViey~~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~--id-~~~l~eLl~AAnyL~I~~Lld~~c~~va~~ 125 (159)
T 2ast_A 49 VNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLK--VD-QGTLFELILAANYLDIKGLLDVTCKTVANM 125 (159)
T ss_dssp SCHHHHHHHHHHHHHTTTCCC-----------CCCCCHHHHHHTC--SC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCcCCCCcccccccccchhhhhHHHHHHHc--CC-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 66666667777665444 1223444555663 77 999999999999999999999999999988
Q ss_pred hhhhcCChhHHhhhcC
Q 003035 351 LPSSLYNPKVMKIFCS 366 (855)
Q Consensus 351 ~~~v~~~~~f~~ll~~ 366 (855)
+.. ...+++.+++.-
T Consensus 126 i~g-kt~eeir~~f~I 140 (159)
T 2ast_A 126 IKG-KTPEEIRKTFNI 140 (159)
T ss_dssp HSS-CCHHHHHHHTTC
T ss_pred HcC-CCHHHHHHHcCC
Confidence 775 233566666653
No 317
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=42.93 E-value=11 Score=33.17 Aligned_cols=32 Identities=13% Similarity=0.022 Sum_probs=27.2
Q ss_pred cCChhhHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 003035 318 VGDIEDALILIDYGLEERATLLVASCLQVLLRE 350 (855)
Q Consensus 318 l~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~ 350 (855)
++ .+|+..++..|..++.+.|.+.|.+|+.++
T Consensus 86 ~~-~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~ 117 (119)
T 3b84_A 86 LT-SGNRDQVLLAARELRVPEAVELCQSFKPKT 117 (119)
T ss_dssp CC-TTTHHHHHHHHHHTTCHHHHHHHHHCC---
T ss_pred cC-HHHHHHHHHHHHHhCcHHHHHHHHHHHHHc
Confidence 45 799999999999999999999999998765
No 318
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=40.94 E-value=82 Score=28.65 Aligned_cols=94 Identities=11% Similarity=0.045 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhccCCCCC--CCHHHHHHHHHHhchhC---------------hHHHHHHHHHHHHhhcCChhhHHHHHHH
Q 003035 268 VEGLRAVEVYTRTSRVDL--FCPGIVLELLSFANRFC---------------CEEMKSACDAHLASLVGDIEDALILIDY 330 (855)
Q Consensus 268 ~~~~~~ll~y~YTg~l~~--~~~~~~~~ll~~A~~~~---------------~~~Lk~~C~~~l~~~l~~~~n~~~~~~~ 330 (855)
...++.+++=.=.+.++. ++...+..++..+.... -..+..--.+|+. ++ .+++++++..
T Consensus 24 S~~ik~ml~~~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~--vd-~~~l~eLi~A 100 (141)
T 1fs1_B 24 SVTIKTMLEDLGMDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLK--VD-QGTLFELILA 100 (141)
T ss_dssp CHHHHHHHHHTCCSSEECTTCCHHHHHHHHHHHHHHTTCC-----------------HHHHHHTC--SC-HHHHHHHHHH
T ss_pred hHHHHHHHHhcCCCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhhhhHHHHHHHh--CC-HHHHHHHHHH
Confidence 345667765421222331 67777777777776554 1234444455563 77 9999999999
Q ss_pred HHHhccHHHHHHHHHHHHhhhhhhcCChhHHhhhc
Q 003035 331 GLEERATLLVASCLQVLLRELPSSLYNPKVMKIFC 365 (855)
Q Consensus 331 A~~~~~~~L~~~c~~~i~~~~~~v~~~~~f~~ll~ 365 (855)
|.-.+...|.+.|.+++...+.. -..+++.+.+.
T Consensus 101 AnyL~I~~Lldl~c~~vA~~ikg-kt~eeiR~~f~ 134 (141)
T 1fs1_B 101 ANYLDIKGLLDVTCKTVANMIKG-KTPEEIRKTFN 134 (141)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTT-CCHHHHHHHTC
T ss_pred HHHHhhhHHHHHHHHHHHHHHcC-CCHHHHHHHcC
Confidence 99999999999999999988776 23345555553
No 319
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=40.51 E-value=1.1e+02 Score=27.96 Aligned_cols=57 Identities=14% Similarity=-0.052 Sum_probs=0.0
Q ss_pred HHHHHH-HHHHhCCHHHHHHHHHHHHccCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003035 518 YKYRAV-AKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLAL 574 (855)
Q Consensus 518 ~~~~a~-~~~~~~~~~~A~~~~~k~l~~~p-~~~~l~lra~~y~~~gd~~~A~~~~~~a 574 (855)
|..+|. ++..+|+-++=-..++.++..++ +++.+.-.|..|.+.|+..+|.+.++++
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
No 320
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=40.14 E-value=25 Score=30.73 Aligned_cols=29 Identities=10% Similarity=0.099 Sum_probs=26.9
Q ss_pred cCChhhHHHHHHHHHHhccHHHHHHHHHHH
Q 003035 318 VGDIEDALILIDYGLEERATLLVASCLQVL 347 (855)
Q Consensus 318 l~~~~n~~~~~~~A~~~~~~~L~~~c~~~i 347 (855)
++ .+|+..++..|..++.+.|.+.|.+|+
T Consensus 91 ~~-~~~~~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 91 VS-TANVGDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp CC-GGGHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cC-HHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 44 799999999999999999999999987
No 321
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=39.00 E-value=17 Score=38.02 Aligned_cols=34 Identities=12% Similarity=0.156 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHhchhChHHHHHHHHHHHHhhcC
Q 003035 286 FCPGIVLELLSFANRFCCEEMKSACDAHLASLVG 319 (855)
Q Consensus 286 ~~~~~~~~ll~~A~~~~~~~Lk~~C~~~l~~~l~ 319 (855)
++.+++.+++.+|++|.++.|+..|.+|+...+.
T Consensus 272 ~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~ 305 (312)
T 3hqi_A 272 LSVENAAEILILADLHSADQLKTQAVDFINYHAT 305 (312)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 6778999999999999999999999999998765
No 322
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=38.89 E-value=2e+02 Score=35.09 Aligned_cols=88 Identities=9% Similarity=-0.030 Sum_probs=62.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---------------------c
Q 003035 646 QSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI---------------------E 704 (855)
Q Consensus 646 ~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~kal~~---------------------~ 704 (855)
....+...|.++-|. ..+..-|.++..-|.+|.++...|++++|..+|++|-.. .
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 344556677776544 456777888888899999999999999999999986421 0
Q ss_pred CCh---HHHHHHHHHHHHCCCCchhHHHHHHHHHHHhcCC
Q 003035 705 RTF---EAFFLKAYILADTNLDPESSTYVIQLLEEALRCP 741 (855)
Q Consensus 705 p~~---~a~~~lg~~~~~~g~~~~A~~~~~~lle~al~~~ 741 (855)
++. ..|......+...+.++-++.. -+.||+..
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~f----A~lAI~~~ 927 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEF----SLLADASK 927 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHH----HHHHHHTC
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHH----HHHHHhhc
Confidence 111 2344556677777777777777 77787544
No 323
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=38.37 E-value=42 Score=28.21 Aligned_cols=28 Identities=11% Similarity=0.107 Sum_probs=23.7
Q ss_pred HHHHHhhhhHhhhhcHHHHHHHHHHHHH
Q 003035 420 LALHQLGCVMFEREEYKDACYYFEAAAD 447 (855)
Q Consensus 420 ~a~~~LG~~~l~~g~~~eA~~~~~~Al~ 447 (855)
-.+...+..++..|+|++|+++.++|..
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3455788899999999999999999874
No 324
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=33.98 E-value=55 Score=26.98 Aligned_cols=22 Identities=9% Similarity=0.081 Sum_probs=16.4
Q ss_pred hhhHhhhhcHHHHHHHHHHHHH
Q 003035 426 GCVMFEREEYKDACYYFEAAAD 447 (855)
Q Consensus 426 G~~~l~~g~~~eA~~~~~~Al~ 447 (855)
|.-.-+.|+|++|+.+|.++++
T Consensus 26 Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 26 AVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 3334556899999999988875
No 325
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=33.65 E-value=1.1e+02 Score=33.00 Aligned_cols=66 Identities=12% Similarity=0.112 Sum_probs=45.5
Q ss_pred ChHHHHHHHHhHHHcCCCchHHHHHHhhccCcchHHHHHHHHHHh-----CCCCchhHHHHHHHHHHhCCHHHHHHHHHH
Q 003035 466 QQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASEL-----DPTLSFPYKYRAVAKMEEGQIRAAISEIDR 540 (855)
Q Consensus 466 ~~~~A~~~l~~~i~~~p~~~~~y~~~~~~~~~~~A~~~l~~a~~l-----dP~~~~a~~~~a~~~~~~~~~~~A~~~~~k 540 (855)
++.-|+..+..+-+..|..+. ..+++.|.+|+.. .-.+.++|.++|..+...+++.+|+.....
T Consensus 275 rYPmALgnLgDLEe~~pt~gr-----------~~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~ 343 (550)
T 3u84_A 275 RYPMALGNLADLEELEPTPGR-----------PDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWAD 343 (550)
T ss_dssp TCHHHHHHHHHHHHHSCCTTC-----------CCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hCchhhcchhhHhhcCCCCCC-----------CCHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHH
Confidence 456677777776666665431 2345555555543 456788999999999999999999887766
Q ss_pred HH
Q 003035 541 II 542 (855)
Q Consensus 541 ~l 542 (855)
+-
T Consensus 344 Aa 345 (550)
T 3u84_A 344 TA 345 (550)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 326
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=32.50 E-value=4e+02 Score=26.73 Aligned_cols=49 Identities=8% Similarity=0.087 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHh-----ccCCh----HHHHHHHHHHHH-CCCCchhHHHHHHHHHHHhc
Q 003035 691 EEALSRAEKSIS-----IERTF----EAFFLKAYILAD-TNLDPESSTYVIQLLEEALR 739 (855)
Q Consensus 691 ~eAl~~~~kal~-----~~p~~----~a~~~lg~~~~~-~g~~~~A~~~~~~lle~al~ 739 (855)
+.|...|++|.. +.|.+ ....+.+..|+. .++.++|...+.+.|+.|+.
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~Ai~ 206 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIA 206 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 556666666654 34555 333344444444 78888888888888888873
No 327
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=32.03 E-value=54 Score=27.01 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=6.9
Q ss_pred HHcCCHHHHHHHHHHH
Q 003035 759 VECGKLDQAENCYINA 774 (855)
Q Consensus 759 ~~~g~~~~A~~~~~kA 774 (855)
-..|++++|+.+|..+
T Consensus 22 D~~g~y~eAl~lY~~a 37 (83)
T 2v6y_A 22 DKEGKVEDAITYYKKA 37 (83)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHH
Confidence 3444444444444333
No 328
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=30.79 E-value=1.4e+02 Score=31.70 Aligned_cols=66 Identities=12% Similarity=0.010 Sum_probs=45.0
Q ss_pred ChHHHHHHHHhHHHcCCCchHHHHHHhhccCcchHHHHHHHHHHh-----CCCCchhHHHHHHHHHHhCCHHHHHHHHHH
Q 003035 466 QQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASEL-----DPTLSFPYKYRAVAKMEEGQIRAAISEIDR 540 (855)
Q Consensus 466 ~~~~A~~~l~~~i~~~p~~~~~y~~~~~~~~~~~A~~~l~~a~~l-----dP~~~~a~~~~a~~~~~~~~~~~A~~~~~k 540 (855)
++.-|+..+..+-+..|..+. ..+++.|.+|+.. .-.+.++|.++|..+.+.+++.+|+.....
T Consensus 253 rYPmALgnLgDLEe~~pt~gr-----------~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~ 321 (472)
T 3re2_A 253 TYPMAIANLGDLEEISPTPGR-----------PPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVD 321 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCTTS-----------CCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hCchhhcchhhHHhcCCCCCC-----------CCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHH
Confidence 455677666666666665431 2355555666543 456788999999988999999999887766
Q ss_pred HH
Q 003035 541 II 542 (855)
Q Consensus 541 ~l 542 (855)
+-
T Consensus 322 Aa 323 (472)
T 3re2_A 322 AG 323 (472)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 329
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=30.01 E-value=1.1e+02 Score=33.86 Aligned_cols=108 Identities=11% Similarity=0.029 Sum_probs=62.8
Q ss_pred ccHHHHHHHHHHHHhhhhhhcCChhHHhhhcCchhHHHHHhhchhhHHHHHHHHHhhcccccchhhHHHHHHHH------
Q 003035 335 RATLLVASCLQVLLRELPSSLYNPKVMKIFCSSEATERLANVGHASFLLYYFLSQVAMEKDRVSNTTVMLLERL------ 408 (855)
Q Consensus 335 ~~~~L~~~c~~~i~~~~~~v~~~~~f~~ll~~~~~~~r~~~~~~~~f~l~~~La~~~~~~~~~~~~a~~~le~~------ 408 (855)
......+.|-+.|.+-|..++.+..--.-.+..+++.-...+.+. |-.+|...+. ..-+-.++...
T Consensus 137 ~~~~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~-------L~kiYFkl~~-~~lckni~k~i~~~~~~ 208 (455)
T 3t5v_B 137 RSHQFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNK-------LNNIYFRIES-PQLCSNIFKNFQPKSML 208 (455)
T ss_dssp CTTHHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHH-------HHHHHHHSSC-CTTHHHHHHTHHHHCCC
T ss_pred cchhHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHH-------HHHHHHHcCC-HHHHHHHHHHhccCCCC
Confidence 346778889999999998887654311101112333323222322 3355555555 44444444322
Q ss_pred --hhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHHh-cch
Q 003035 409 --GECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADA-GHI 451 (855)
Q Consensus 409 --~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~~-~~~ 451 (855)
.+..|.+ +...-++.+|.+++-+++|.+|.+++..|... .|.
T Consensus 209 p~~~~~p~~-q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 209 AHFNEYQLD-QQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp SCGGGSCHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred cChhhCCcc-ceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc
Confidence 1112222 23445689999999999999999999999876 543
No 330
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=29.88 E-value=88 Score=25.76 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=12.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 003035 755 GSIYVECGKLDQAENCYINALD 776 (855)
Q Consensus 755 G~~y~~~g~~~~A~~~~~kAL~ 776 (855)
|.-.-..|++++|+.+|.++++
T Consensus 26 Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 26 AVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 3344556666666666655544
No 331
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=28.65 E-value=86 Score=33.27 Aligned_cols=43 Identities=21% Similarity=0.195 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcc-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 003035 767 AENCYINALDIK-------HTRAHQGLARVYYLKNELKAAYDEMTKLLEK 809 (855)
Q Consensus 767 A~~~~~kAL~~~-------~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~ 809 (855)
++..|.+|+... +..-|..+|-.+++.+++.+|+..+..+-..
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 666777777643 6677788888999999999999998877654
No 332
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=28.31 E-value=24 Score=32.26 Aligned_cols=29 Identities=14% Similarity=0.028 Sum_probs=26.7
Q ss_pred cCChhhHHHHHHHHHHhccHHHHHHHHHHH
Q 003035 318 VGDIEDALILIDYGLEERATLLVASCLQVL 347 (855)
Q Consensus 318 l~~~~n~~~~~~~A~~~~~~~L~~~c~~~i 347 (855)
++ .+|+..++..|..++.+.|.+.|.+||
T Consensus 115 i~-~~~v~~ll~~A~~l~i~~L~~~C~~~L 143 (144)
T 2ppi_A 115 LN-EDTIQDVVQAADLLLLTDLKTLCCEFL 143 (144)
T ss_dssp CC-TTTHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred CC-HHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 45 799999999999999999999999876
No 333
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=27.73 E-value=25 Score=31.74 Aligned_cols=32 Identities=19% Similarity=0.029 Sum_probs=25.2
Q ss_pred hhhHHHHHHHHHHhccHHHHHHHHHHHHhhhh
Q 003035 321 IEDALILIDYGLEERATLLVASCLQVLLRELP 352 (855)
Q Consensus 321 ~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~ 352 (855)
.+|+..++..|..+..+.|.+.|.+|+.+++.
T Consensus 93 ~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~ 124 (145)
T 4eoz_A 93 DKMADDLLAAADKYALERLKVMCEDALCSNLS 124 (145)
T ss_dssp GGTHHHHHHHHHHTTCHHHHHHHHCC------
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC
Confidence 78999999999999999999999999987654
No 334
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=26.56 E-value=45 Score=29.34 Aligned_cols=31 Identities=10% Similarity=-0.020 Sum_probs=27.1
Q ss_pred cCChhhHHHHHHHHHHhccHHHHHHHHHHHHh
Q 003035 318 VGDIEDALILIDYGLEERATLLVASCLQVLLR 349 (855)
Q Consensus 318 l~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~ 349 (855)
++ .+|+..++..|..+..+.|++.|.+++.+
T Consensus 87 i~-~~~v~~ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 87 LQ-PGELRPLQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp EC-GGGHHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred cC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 55 89999999999999999999999998654
No 335
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=26.08 E-value=4.9e+02 Score=25.80 Aligned_cols=49 Identities=14% Similarity=0.055 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHh-----ccCCh----HHHHHHHHHHH-HCCCCchhHHHHHHHHHHHh
Q 003035 690 REEALSRAEKSIS-----IERTF----EAFFLKAYILA-DTNLDPESSTYVIQLLEEAL 738 (855)
Q Consensus 690 ~~eAl~~~~kal~-----~~p~~----~a~~~lg~~~~-~~g~~~~A~~~~~~lle~al 738 (855)
.+.|...|++|.+ +.|.+ ....+.+..|+ -.++.++|...+.+.|+.|+
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~Ai 207 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEAM 207 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3556666666654 34555 33334444444 46888888888777787777
No 336
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=25.81 E-value=94 Score=25.51 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=14.7
Q ss_pred HhhhhcHHHHHHHHHHHHH
Q 003035 429 MFEREEYKDACYYFEAAAD 447 (855)
Q Consensus 429 ~l~~g~~~eA~~~~~~Al~ 447 (855)
.-+.|+|++|+.+|.+|++
T Consensus 21 ~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 21 ADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 3456889999999888874
No 337
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=25.70 E-value=2.1e+02 Score=26.67 Aligned_cols=60 Identities=10% Similarity=0.062 Sum_probs=45.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--H-HHH------HHHHHHHHHCCCHHHHHHHHHHHHhc
Q 003035 644 FRQSLLLLRLNCQKAAMRCLRLARNHSSSE--H-ERL------VYEGWILYDTGHREEALSRAEKSISI 703 (855)
Q Consensus 644 ~~~a~~l~~~g~~~~A~~~l~~al~~~p~~--~-~~~------~~lg~~~~~~g~~~eAl~~~~kal~~ 703 (855)
+..+..++..|+|-+|=+.++.+....+.. . ..+ ..-|..+.+.|+...|...+++++..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 556778888999999999999999887654 1 122 22334556789999999999999874
No 338
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=25.28 E-value=86 Score=26.60 Aligned_cols=30 Identities=17% Similarity=0.183 Sum_probs=24.6
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhccCCh
Q 003035 678 VYEGWILYDTGHREEALSRAEKSISIERTF 707 (855)
Q Consensus 678 ~~lg~~~~~~g~~~eAl~~~~kal~~~p~~ 707 (855)
..+|..+...|+++.|+.+|-+|+...|+-
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 467888888888999999888888887754
No 339
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=25.08 E-value=15 Score=37.32 Aligned_cols=43 Identities=19% Similarity=0.359 Sum_probs=0.0
Q ss_pred HHHhhcccccchhhHHHHHHHHhhchhhHHHHHHHHHHhhhhHhhhhcHHHHHHHHHHHHH
Q 003035 387 LSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAAD 447 (855)
Q Consensus 387 La~~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~LG~~~l~~g~~~eA~~~~~~Al~ 447 (855)
+|...+..++....|+.++.+|++.+. .|+|++|+.+|+.|++
T Consensus 9 m~ks~~g~dp~~~~Ai~lv~~AVe~D~------------------~g~y~eAl~lY~eaIe 51 (257)
T 2ymb_A 9 MAKSGLRQDPQSTAAATVLKRAVELDS------------------ESRYPQALVCYQEGID 51 (257)
T ss_dssp -------------------------------------------------------------
T ss_pred hhhccCCCChhHHHHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHH
Confidence 455566667767788889888888753 3688888888888875
No 340
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=24.43 E-value=4.5e+02 Score=25.43 Aligned_cols=61 Identities=7% Similarity=-0.019 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 003035 749 QALNNLGSIYVECGKLDQAENCYINALDIK----HTRAHQGLARVYYLKNELKAAYDEMTKLLEKA 810 (855)
Q Consensus 749 ~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~----~~~a~~~lg~~~~~~g~~~~A~~~~~kal~~~ 810 (855)
..|...+..+ ..+...++.+.|.-..... .+..|-..|..+...|++.+|.+.|+..|+..
T Consensus 81 klWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 81 KIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 5555555544 2334667777777666554 56667777888888888888888888888764
No 341
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=24.15 E-value=66 Score=27.30 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=23.5
Q ss_pred HHhhhhHhhhhcHHHHHHHHHHHHHhc
Q 003035 423 HQLGCVMFEREEYKDACYYFEAAADAG 449 (855)
Q Consensus 423 ~~LG~~~l~~g~~~eA~~~~~~Al~~~ 449 (855)
..+|..++.+|+++.|..+|-+|+...
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc 50 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVC 50 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 478999999999999999999998764
No 342
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=24.13 E-value=1.8e+02 Score=27.23 Aligned_cols=75 Identities=15% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHcCCHHHH
Q 003035 730 VIQLLEEALRCPSDGLRKG------QALNNLGSIYVECGKLDQAENCYINALDIK----HTRAHQGLARVYYLKNELKAA 799 (855)
Q Consensus 730 ~~~lle~al~~~~~~~~p~------~a~~~LG~~y~~~g~~~~A~~~~~kAL~~~----~~~a~~~lg~~~~~~g~~~~A 799 (855)
+..+++++++...+...-. .+|...+... +.+.+.|.-..... .+..|-..|..+...|++.+|
T Consensus 42 L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A 115 (164)
T 2wvi_A 42 MSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC------NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKA 115 (164)
T ss_dssp HHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC------SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHH
Q ss_pred HHHHHHHHHHc
Q 003035 800 YDEMTKLLEKA 810 (855)
Q Consensus 800 ~~~~~kal~~~ 810 (855)
.+.|+..++..
T Consensus 116 ~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 116 DAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHcC
No 343
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=24.03 E-value=90 Score=25.87 Aligned_cols=18 Identities=17% Similarity=0.285 Sum_probs=14.7
Q ss_pred hhhhcHHHHHHHHHHHHH
Q 003035 430 FEREEYKDACYYFEAAAD 447 (855)
Q Consensus 430 l~~g~~~eA~~~~~~Al~ 447 (855)
-..|+|++|+.+|..|++
T Consensus 27 D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 27 DSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 446899999999988875
No 344
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=23.93 E-value=2.6e+02 Score=34.03 Aligned_cols=77 Identities=13% Similarity=0.062 Sum_probs=57.0
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CC--------------------C--cHHHHHHHHHHH
Q 003035 628 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH-SS--------------------S--EHERLVYEGWIL 684 (855)
Q Consensus 628 ~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~l~~al~~-~p--------------------~--~~~~~~~lg~~~ 684 (855)
.+...+.--|.++..-|.+|.+++..|++++|..+|++|-.- .. + ...-|.....++
T Consensus 828 ~a~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LF 907 (950)
T 4gq2_M 828 ACMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKL 907 (950)
T ss_dssp HHHHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHH
Confidence 445667777889888999999999999999999999986421 10 1 111234566777
Q ss_pred HHCCCHHHHHHHHHHHHhcc
Q 003035 685 YDTGHREEALSRAEKSISIE 704 (855)
Q Consensus 685 ~~~g~~~eAl~~~~kal~~~ 704 (855)
...+-++.++...+.||+.-
T Consensus 908 E~~~a~~~vi~fA~lAI~~~ 927 (950)
T 4gq2_M 908 FEESAYIDALEFSLLADASK 927 (950)
T ss_dssp HHTTCHHHHHHHHHHHHHTC
T ss_pred HhcCCHHHHHHHHHHHHhhc
Confidence 78888888888888888643
No 345
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=23.78 E-value=4.2e+02 Score=24.67 Aligned_cols=59 Identities=10% Similarity=-0.034 Sum_probs=44.0
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHccCCCH--hHHHHH--------HHHHHHcCCHHHHHHHHHHHHhc
Q 003035 519 KYRAVAKMEEGQIRAAISEIDRIIVFKLSV--DCLELR--------AWLFIAADDYESALRDTLALLAL 577 (855)
Q Consensus 519 ~~~a~~~~~~~~~~~A~~~~~k~l~~~p~~--~~l~lr--------a~~y~~~gd~~~A~~~~~~aL~~ 577 (855)
+..+..+++.|+|=+|=+.++.+-...+.+ +.-..+ |..+...|+...|...+.+++..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 345778888999999999999998765433 322222 34557789999999999999863
No 346
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=23.29 E-value=46 Score=34.05 Aligned_cols=34 Identities=6% Similarity=0.061 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHhchhChHHHHHHHHHHHHhhcC
Q 003035 286 FCPGIVLELLSFANRFCCEEMKSACDAHLASLVG 319 (855)
Q Consensus 286 ~~~~~~~~ll~~A~~~~~~~Lk~~C~~~l~~~l~ 319 (855)
++++++..++.+|+.|+++.|+..|.+++.....
T Consensus 139 l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~ 172 (279)
T 3i3n_A 139 LHLSNCVAIHSLAHMYTLSQLALKAADMIRRNFH 172 (279)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTHH
T ss_pred CCcchHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999986543
No 347
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=22.86 E-value=5.7e+02 Score=25.37 Aligned_cols=45 Identities=20% Similarity=0.318 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhcc-------cHH---HHHHHHHHHH-HcCCHHHHHHHHHHHHH
Q 003035 764 LDQAENCYINALDIK-------HTR---AHQGLARVYY-LKNELKAAYDEMTKLLE 808 (855)
Q Consensus 764 ~~~A~~~~~kAL~~~-------~~~---a~~~lg~~~~-~~g~~~~A~~~~~kal~ 808 (855)
.+.|.+.|++|.++. ||. ...|++..|+ .+|+.++|...-++|+.
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD 204 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467888898888754 331 2334444444 46888888887777664
No 348
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=22.85 E-value=6e+02 Score=25.61 Aligned_cols=50 Identities=16% Similarity=0.100 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhc----cCCh----HHHHHHHHHHHH-CCCCchhHHHHHHHHHHHhc
Q 003035 690 REEALSRAEKSISI----ERTF----EAFFLKAYILAD-TNLDPESSTYVIQLLEEALR 739 (855)
Q Consensus 690 ~~eAl~~~~kal~~----~p~~----~a~~~lg~~~~~-~g~~~~A~~~~~~lle~al~ 739 (855)
.+.|...|++|.++ .|.+ ....+.+..|+. .++.++|...+.+.|+.|+.
T Consensus 172 ~e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai~ 230 (260)
T 2npm_A 172 AEDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMAIE 230 (260)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 35677778877754 4544 333344444555 78999999998888999883
No 349
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=22.76 E-value=16 Score=32.71 Aligned_cols=32 Identities=9% Similarity=0.070 Sum_probs=22.6
Q ss_pred cCChhhHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 003035 318 VGDIEDALILIDYGLEERATLLVASCLQVLLRE 350 (855)
Q Consensus 318 l~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~ 350 (855)
++ .+|+..++..|..+..+.|.+.|.+|+.+.
T Consensus 96 i~-~~~~~~ll~~A~~~~i~~l~~~C~~~L~~~ 127 (129)
T 3ga1_A 96 MN-VGDQDLLMYTAGFLQIQEIMEKGTEFFLKV 127 (129)
T ss_dssp CC-TTTHHHHHHHHHHTTBTTSSCC--------
T ss_pred cC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 55 899999999999999999999999999865
No 350
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=22.33 E-value=5.8e+02 Score=25.26 Aligned_cols=42 Identities=10% Similarity=0.195 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHccCC--CHhHHHHHHHHH
Q 003035 517 PYKYRAVAKMEEGQIRAAISEIDRIIVFKL--SVDCLELRAWLF 558 (855)
Q Consensus 517 a~~~~a~~~~~~~~~~~A~~~~~k~l~~~p--~~~~l~lra~~y 558 (855)
-..++|.+.-+.++|++.....++++..++ +.+-..+....|
T Consensus 7 ~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvay 50 (234)
T 2br9_A 7 DLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAY 50 (234)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHH
Confidence 345677777778888888888888877655 344444444443
No 351
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=21.90 E-value=58 Score=32.70 Aligned_cols=34 Identities=12% Similarity=-0.012 Sum_probs=30.1
Q ss_pred cCChhhHHHHHHHHHHhccHHHHHHHHHHHHhhhh
Q 003035 318 VGDIEDALILIDYGLEERATLLVASCLQVLLRELP 352 (855)
Q Consensus 318 l~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~ 352 (855)
++ .+|+..++..|..++.+.|.+.|.+|+.+++.
T Consensus 99 i~-~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~ 132 (256)
T 3hve_A 99 LN-EDTIQDVVQAADLLLLTDLKTLCCEFLEGCIA 132 (256)
T ss_dssp CC--CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCC
T ss_pred cc-HhHHHHHHHHHHHHChHHHHHHHHHHHHhhCC
Confidence 45 89999999999999999999999999988753
No 352
>2plx_B Peptide inhibitor; helix-turn-helix, hydrolase; HET: FLC; 1.56A {Bos taurus}
Probab=21.88 E-value=52 Score=19.84 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=17.4
Q ss_pred HHHHHHHHHhccHHHHHHHHHH
Q 003035 325 LILIDYGLEERATLLVASCLQV 346 (855)
Q Consensus 325 ~~~~~~A~~~~~~~L~~~c~~~ 346 (855)
+.++-+|.+|+.++|...|++-
T Consensus 2 ckvmcyaqrhsspellrrcldn 23 (26)
T 2plx_B 2 CKVMCYAQRHSSPELLRRCLDN 23 (26)
T ss_dssp HHHHHHHBCCCCHHHHHHHHHH
T ss_pred ceEEeehhhcCCHHHHHHHHhc
Confidence 3466788899999999998763
No 353
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=21.82 E-value=1e+02 Score=25.30 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=14.4
Q ss_pred hhhhcHHHHHHHHHHHHH
Q 003035 430 FEREEYKDACYYFEAAAD 447 (855)
Q Consensus 430 l~~g~~~eA~~~~~~Al~ 447 (855)
-..|+|++|+.+|..|++
T Consensus 24 D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 24 DTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 345899999999988875
No 354
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=21.66 E-value=3.4e+02 Score=29.43 Aligned_cols=40 Identities=15% Similarity=0.136 Sum_probs=28.6
Q ss_pred HHHHHHHHHHh-------cchhhhhhHHHHHHHhCChHHHHHHHHhH
Q 003035 438 ACYYFEAAADA-------GHIYSLAGLARAKYKVGQQYSAYKLINSI 477 (855)
Q Consensus 438 A~~~~~~Al~~-------~~~~a~~~la~~~~~~g~~~~A~~~l~~~ 477 (855)
++..|.+|+.. .|.|.+.-+|..++..+++.+|+.....+
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~A 344 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADT 344 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHH
Confidence 55666666543 46777888888888888888888765543
No 355
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=20.95 E-value=1.9e+02 Score=23.20 Aligned_cols=33 Identities=15% Similarity=0.010 Sum_probs=21.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 003035 645 RQSLLLLRLNCQKAAMRCLRLARNHSSSEHERL 677 (855)
Q Consensus 645 ~~a~~l~~~g~~~~A~~~l~~al~~~p~~~~~~ 677 (855)
.+|..++..|++++|...|-+|+...|.-.+.+
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL 54 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLL 54 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 456666777777777777777777776655443
Done!