Query 003036
Match_columns 854
No_of_seqs 691 out of 2123
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 15:45:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003036.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003036hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4660 Protein Mei2, essentia 100.0 8.1E-74 1.8E-78 636.4 25.5 522 92-827 1-529 (549)
2 PF04059 RRM_2: RNA recognitio 100.0 4.1E-46 8.9E-51 339.7 10.2 97 683-779 1-97 (97)
3 TIGR01659 sex-lethal sex-letha 99.9 7.4E-27 1.6E-31 258.8 19.8 164 142-309 102-277 (346)
4 KOG0148 Apoptosis-promoting RN 99.9 3.8E-26 8.3E-31 236.5 14.3 217 52-309 4-240 (321)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 1.5E-24 3.3E-29 239.2 20.8 159 146-308 2-172 (352)
6 TIGR01628 PABP-1234 polyadenyl 99.9 2E-24 4.3E-29 253.7 22.0 174 144-317 175-375 (562)
7 TIGR01645 half-pint poly-U bin 99.9 1.4E-24 3.1E-29 253.0 19.4 163 145-307 105-284 (612)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 6E-24 1.3E-28 234.5 20.1 165 146-310 88-352 (352)
9 KOG0117 Heterogeneous nuclear 99.9 1.3E-23 2.8E-28 229.7 19.3 164 145-311 81-335 (506)
10 TIGR01622 SF-CC1 splicing fact 99.9 2.6E-23 5.7E-28 237.7 19.2 163 143-306 85-265 (457)
11 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 4.8E-23 1E-27 238.2 19.1 162 146-308 1-175 (481)
12 TIGR01628 PABP-1234 polyadenyl 99.9 3.9E-23 8.5E-28 242.8 17.9 158 149-308 2-168 (562)
13 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 7.8E-23 1.7E-27 236.4 19.5 164 144-307 272-480 (481)
14 KOG0144 RNA-binding protein CU 99.9 2.8E-23 6E-28 226.2 14.0 176 144-322 31-223 (510)
15 TIGR01648 hnRNP-R-Q heterogene 99.9 2.3E-22 5E-27 234.2 21.0 161 146-309 57-309 (578)
16 TIGR01642 U2AF_lg U2 snRNP aux 99.9 7.7E-22 1.7E-26 228.5 19.1 163 142-306 170-374 (509)
17 KOG0145 RNA-binding protein EL 99.9 3.3E-22 7.2E-27 206.0 13.2 163 145-311 39-213 (360)
18 TIGR01642 U2AF_lg U2 snRNP aux 99.8 1.7E-20 3.6E-25 217.4 18.8 163 145-307 293-502 (509)
19 KOG0131 Splicing factor 3b, su 99.8 5E-21 1.1E-25 189.4 11.8 161 146-309 8-179 (203)
20 KOG0109 RNA-binding protein LA 99.8 7.5E-21 1.6E-25 199.1 10.5 148 148-307 3-150 (346)
21 TIGR01622 SF-CC1 splicing fact 99.8 1.6E-19 3.6E-24 206.5 19.2 163 146-308 185-449 (457)
22 KOG0127 Nucleolar protein fibr 99.8 1.1E-19 2.4E-24 202.7 14.9 164 148-311 6-200 (678)
23 KOG0127 Nucleolar protein fibr 99.8 1.1E-18 2.3E-23 194.8 16.5 167 147-313 117-384 (678)
24 KOG0145 RNA-binding protein EL 99.8 1.7E-18 3.6E-23 178.9 14.7 165 143-307 123-358 (360)
25 KOG0123 Polyadenylate-binding 99.8 2.7E-18 5.9E-23 191.9 15.3 150 148-311 2-157 (369)
26 KOG0124 Polypyrimidine tract-b 99.8 2.3E-18 5E-23 184.2 10.4 157 147-305 113-288 (544)
27 KOG0110 RNA-binding protein (R 99.7 7.3E-18 1.6E-22 193.6 12.0 160 150-309 518-695 (725)
28 KOG4206 Spliceosomal protein s 99.7 6.1E-17 1.3E-21 165.9 15.1 163 143-305 5-220 (221)
29 KOG0146 RNA-binding protein ET 99.7 5.5E-17 1.2E-21 168.3 8.1 166 146-311 18-369 (371)
30 KOG0123 Polyadenylate-binding 99.7 2.9E-16 6.3E-21 175.7 14.3 163 148-311 77-250 (369)
31 KOG0144 RNA-binding protein CU 99.6 2.8E-16 6E-21 172.0 9.6 163 146-308 123-505 (510)
32 KOG0148 Apoptosis-promoting RN 99.6 4.2E-16 9E-21 162.5 10.1 135 145-309 4-144 (321)
33 TIGR01645 half-pint poly-U bin 99.6 4E-15 8.7E-20 174.4 19.5 77 145-221 202-283 (612)
34 KOG4212 RNA-binding protein hn 99.6 2.8E-13 6E-18 148.5 31.4 159 146-304 43-291 (608)
35 KOG0105 Alternative splicing f 99.6 2.2E-15 4.8E-20 149.6 12.5 149 145-295 4-176 (241)
36 KOG0147 Transcriptional coacti 99.6 3.6E-16 7.9E-21 175.9 6.1 164 142-306 174-357 (549)
37 KOG4205 RNA-binding protein mu 99.6 2.2E-15 4.8E-20 164.1 9.7 163 146-310 5-179 (311)
38 KOG0147 Transcriptional coacti 99.5 1.2E-13 2.6E-18 155.9 11.8 163 146-308 277-529 (549)
39 KOG0106 Alternative splicing f 99.5 6.9E-14 1.5E-18 144.6 6.5 153 148-306 2-170 (216)
40 PLN03134 glycine-rich RNA-bind 99.4 6.3E-13 1.4E-17 130.8 11.4 80 145-224 32-116 (144)
41 KOG1457 RNA binding protein (c 99.4 7E-13 1.5E-17 135.4 11.9 150 146-295 33-274 (284)
42 KOG0110 RNA-binding protein (R 99.4 1.4E-12 3E-17 150.8 13.0 162 143-305 381-596 (725)
43 PLN03134 glycine-rich RNA-bind 99.4 1E-12 2.2E-17 129.3 10.0 78 231-308 33-115 (144)
44 KOG1548 Transcription elongati 99.4 1.5E-11 3.3E-16 132.4 16.6 161 145-305 132-350 (382)
45 KOG1190 Polypyrimidine tract-b 99.4 7.4E-12 1.6E-16 136.9 14.4 160 147-306 297-490 (492)
46 KOG1190 Polypyrimidine tract-b 99.3 3E-11 6.4E-16 132.3 14.7 163 146-308 149-374 (492)
47 PF00076 RRM_1: RNA recognitio 99.3 9.1E-12 2E-16 105.0 7.8 66 150-215 1-70 (70)
48 PF00076 RRM_1: RNA recognitio 99.3 1.3E-11 2.8E-16 104.1 8.3 66 235-300 1-70 (70)
49 TIGR01648 hnRNP-R-Q heterogene 99.3 1.5E-11 3.2E-16 144.3 11.1 112 146-260 232-369 (578)
50 COG0724 RNA-binding proteins ( 99.3 3.8E-11 8.3E-16 123.4 12.2 118 147-264 115-257 (306)
51 KOG0107 Alternative splicing f 99.2 1.4E-11 3.1E-16 122.1 7.2 77 147-223 10-86 (195)
52 KOG4211 Splicing factor hnRNP- 99.2 9.3E-11 2E-15 131.4 13.3 162 147-311 10-186 (510)
53 KOG0107 Alternative splicing f 99.2 1.9E-11 4.1E-16 121.3 6.4 77 232-308 10-86 (195)
54 TIGR01659 sex-lethal sex-letha 99.2 3.7E-11 8E-16 134.0 8.8 77 231-307 106-187 (346)
55 KOG0120 Splicing factor U2AF, 99.2 7.7E-11 1.7E-15 134.8 10.7 163 146-308 288-493 (500)
56 KOG4660 Protein Mei2, essentia 99.2 6.2E-11 1.3E-15 134.5 9.1 170 139-311 66-254 (549)
57 KOG0124 Polypyrimidine tract-b 99.1 3.4E-10 7.3E-15 122.3 12.5 161 145-305 208-533 (544)
58 KOG0121 Nuclear cap-binding pr 99.1 7E-11 1.5E-15 112.0 6.1 77 144-220 33-114 (153)
59 KOG0125 Ataxin 2-binding prote 99.1 1.1E-10 2.3E-15 125.2 8.1 100 205-308 73-175 (376)
60 KOG0114 Predicted RNA-binding 99.1 2.7E-10 5.8E-15 104.5 9.4 83 231-313 17-101 (124)
61 KOG0114 Predicted RNA-binding 99.1 2.9E-10 6.2E-15 104.3 8.8 80 143-222 14-95 (124)
62 PLN03120 nucleic acid binding 99.1 3.6E-10 7.9E-15 120.1 10.5 75 147-222 4-80 (260)
63 KOG1456 Heterogeneous nuclear 99.1 1.4E-09 3E-14 118.2 14.6 169 140-309 24-201 (494)
64 PF14259 RRM_6: RNA recognitio 99.1 4.4E-10 9.5E-15 95.8 8.8 66 235-300 1-70 (70)
65 PF14259 RRM_6: RNA recognitio 99.1 3.1E-10 6.8E-15 96.7 7.7 66 150-215 1-70 (70)
66 PLN03120 nucleic acid binding 99.1 3.5E-10 7.6E-15 120.2 9.2 74 232-306 4-79 (260)
67 KOG0125 Ataxin 2-binding prote 99.1 3E-10 6.5E-15 121.9 8.4 78 146-223 95-175 (376)
68 KOG0122 Translation initiation 99.1 2.8E-10 6E-15 118.1 8.0 77 146-222 188-269 (270)
69 smart00362 RRM_2 RNA recogniti 99.0 6.9E-10 1.5E-14 92.0 8.3 69 234-302 1-72 (72)
70 PLN03213 repressor of silencin 99.0 4.2E-10 9.1E-15 125.3 8.7 119 145-265 8-136 (759)
71 KOG0122 Translation initiation 99.0 5E-10 1.1E-14 116.3 8.0 77 231-307 188-269 (270)
72 KOG4212 RNA-binding protein hn 99.0 2.9E-09 6.2E-14 117.5 14.0 73 232-304 536-608 (608)
73 PF13893 RRM_5: RNA recognitio 99.0 1.2E-09 2.5E-14 89.9 8.2 56 249-304 1-56 (56)
74 smart00362 RRM_2 RNA recogniti 99.0 1.5E-09 3.2E-14 89.9 8.5 68 149-216 1-71 (72)
75 KOG0121 Nuclear cap-binding pr 99.0 5.8E-10 1.3E-14 105.8 5.9 78 231-308 35-117 (153)
76 KOG4207 Predicted splicing fac 99.0 8.7E-10 1.9E-14 112.0 6.9 80 141-220 7-91 (256)
77 KOG0113 U1 small nuclear ribon 99.0 1.9E-09 4E-14 114.7 9.3 83 139-221 93-180 (335)
78 KOG0129 Predicted RNA-binding 99.0 6.3E-09 1.4E-13 117.7 13.8 158 144-305 256-452 (520)
79 KOG0149 Predicted RNA-binding 98.9 1.1E-09 2.4E-14 113.4 7.0 77 143-220 8-89 (247)
80 smart00360 RRM RNA recognition 98.9 3.1E-09 6.6E-14 87.6 7.4 66 237-302 1-71 (71)
81 cd00590 RRM RRM (RNA recogniti 98.9 5.1E-09 1.1E-13 87.2 8.7 70 234-303 1-74 (74)
82 KOG1456 Heterogeneous nuclear 98.9 2.4E-08 5.1E-13 108.8 15.9 166 142-307 282-491 (494)
83 KOG0105 Alternative splicing f 98.9 1.2E-09 2.6E-14 109.3 5.5 77 231-307 5-83 (241)
84 KOG4207 Predicted splicing fac 98.9 1.1E-09 2.4E-14 111.2 5.1 74 233-306 14-92 (256)
85 PLN03213 repressor of silencin 98.9 3.5E-09 7.6E-14 118.1 8.7 80 232-311 10-92 (759)
86 KOG0117 Heterogeneous nuclear 98.9 6.7E-09 1.4E-13 115.4 10.7 74 233-306 84-163 (506)
87 smart00360 RRM RNA recognition 98.9 5.4E-09 1.2E-13 86.1 7.7 66 152-217 1-71 (71)
88 KOG0113 U1 small nuclear ribon 98.9 4.3E-09 9.3E-14 112.0 8.4 89 220-308 89-182 (335)
89 PLN03121 nucleic acid binding 98.9 6.5E-09 1.4E-13 109.2 9.6 74 146-220 4-79 (243)
90 cd00590 RRM RRM (RNA recogniti 98.9 9.2E-09 2E-13 85.6 8.6 70 149-218 1-74 (74)
91 KOG0111 Cyclophilin-type pepti 98.9 1.2E-09 2.5E-14 111.8 3.7 79 146-224 9-92 (298)
92 PLN03121 nucleic acid binding 98.8 7.3E-09 1.6E-13 108.8 8.8 73 233-306 6-80 (243)
93 PF13893 RRM_5: RNA recognitio 98.8 7.7E-09 1.7E-13 85.0 7.1 56 164-219 1-56 (56)
94 KOG0130 RNA-binding protein RB 98.8 3.5E-09 7.5E-14 101.3 5.2 76 234-309 74-154 (170)
95 COG0724 RNA-binding proteins ( 98.8 9.9E-09 2.2E-13 105.5 8.8 75 232-306 115-194 (306)
96 KOG0149 Predicted RNA-binding 98.8 5.9E-09 1.3E-13 108.1 5.2 77 231-308 11-92 (247)
97 KOG0111 Cyclophilin-type pepti 98.8 3.7E-09 7.9E-14 108.2 3.5 80 231-310 9-93 (298)
98 KOG0108 mRNA cleavage and poly 98.8 1.1E-08 2.5E-13 116.4 7.7 77 148-224 19-100 (435)
99 KOG0126 Predicted RNA-binding 98.7 1.4E-09 3.1E-14 108.6 -0.3 75 145-219 33-112 (219)
100 KOG4206 Spliceosomal protein s 98.7 1.4E-08 2.9E-13 105.1 6.5 76 233-308 10-91 (221)
101 KOG0108 mRNA cleavage and poly 98.7 2E-08 4.4E-13 114.5 7.8 79 233-311 19-102 (435)
102 KOG0112 Large RNA-binding prot 98.7 1.3E-08 2.8E-13 120.7 5.7 159 143-308 368-532 (975)
103 KOG0126 Predicted RNA-binding 98.7 4.1E-09 8.9E-14 105.4 0.9 73 231-303 34-111 (219)
104 KOG0146 RNA-binding protein ET 98.7 2.9E-08 6.3E-13 104.1 6.8 96 212-311 3-105 (371)
105 KOG0132 RNA polymerase II C-te 98.7 3.4E-08 7.4E-13 115.6 7.9 77 147-224 421-497 (894)
106 KOG0130 RNA-binding protein RB 98.7 3.1E-08 6.7E-13 94.9 6.1 78 145-222 70-152 (170)
107 KOG1365 RNA-binding protein Fu 98.7 1.2E-07 2.5E-12 103.7 11.2 164 147-311 161-366 (508)
108 KOG0109 RNA-binding protein LA 98.6 2.8E-08 6E-13 105.6 5.2 72 234-308 4-75 (346)
109 smart00361 RRM_1 RNA recogniti 98.6 8.8E-08 1.9E-12 82.7 7.0 57 246-302 2-70 (70)
110 KOG0120 Splicing factor U2AF, 98.6 7.5E-08 1.6E-12 110.7 7.4 163 144-308 172-370 (500)
111 KOG4454 RNA binding protein (R 98.6 2.1E-08 4.4E-13 102.9 2.0 136 145-294 7-150 (267)
112 KOG0131 Splicing factor 3b, su 98.6 5.5E-08 1.2E-12 97.5 5.0 74 232-305 9-87 (203)
113 KOG0132 RNA polymerase II C-te 98.5 1.3E-07 2.8E-12 110.9 7.7 82 231-313 420-501 (894)
114 KOG0153 Predicted RNA-binding 98.5 2.5E-07 5.5E-12 100.5 9.2 83 139-222 220-303 (377)
115 smart00361 RRM_1 RNA recogniti 98.5 2.5E-07 5.4E-12 79.9 6.6 57 160-216 1-69 (70)
116 KOG0153 Predicted RNA-binding 98.5 2.5E-07 5.4E-12 100.6 7.2 77 229-306 225-302 (377)
117 KOG2193 IGF-II mRNA-binding pr 98.3 9.2E-08 2E-12 105.5 0.3 150 148-306 2-156 (584)
118 KOG4210 Nuclear localization s 98.3 5.2E-07 1.1E-11 98.5 5.6 163 145-308 86-265 (285)
119 KOG4208 Nucleolar RNA-binding 98.2 2.6E-06 5.7E-11 87.3 7.9 82 141-222 43-130 (214)
120 KOG0128 RNA-binding protein SA 98.2 1.8E-07 3.9E-12 110.9 -1.7 139 147-306 667-814 (881)
121 KOG0415 Predicted peptidyl pro 98.2 2.1E-06 4.6E-11 93.3 5.9 79 144-222 236-319 (479)
122 KOG0415 Predicted peptidyl pro 98.2 2E-06 4.4E-11 93.5 5.6 78 230-307 237-319 (479)
123 PF03467 Smg4_UPF3: Smg-4/UPF3 98.2 2.2E-06 4.7E-11 87.5 5.2 91 681-771 5-100 (176)
124 KOG4205 RNA-binding protein mu 98.1 4.6E-06 1E-10 91.8 8.0 114 146-260 96-215 (311)
125 KOG0226 RNA-binding proteins [ 98.1 1.6E-06 3.5E-11 91.0 3.7 162 147-308 96-271 (290)
126 KOG4208 Nucleolar RNA-binding 98.1 5.9E-06 1.3E-10 84.7 7.0 77 231-307 48-130 (214)
127 KOG0151 Predicted splicing reg 98.1 6.3E-06 1.4E-10 96.2 7.1 85 137-221 164-256 (877)
128 KOG4661 Hsp27-ERE-TATA-binding 98.0 1.3E-05 2.8E-10 91.4 7.2 76 145-220 403-483 (940)
129 KOG0533 RRM motif-containing p 97.9 2.2E-05 4.8E-10 83.6 8.0 80 143-222 79-162 (243)
130 KOG1457 RNA binding protein (c 97.9 2.8E-05 6E-10 80.6 7.7 80 231-310 33-121 (284)
131 KOG4661 Hsp27-ERE-TATA-binding 97.9 1.5E-05 3.2E-10 91.0 6.2 76 232-307 405-485 (940)
132 KOG0106 Alternative splicing f 97.9 7.8E-06 1.7E-10 85.4 3.4 71 234-307 3-73 (216)
133 KOG0151 Predicted splicing reg 97.8 2.1E-05 4.6E-10 92.0 5.9 78 229-306 171-256 (877)
134 KOG0533 RRM motif-containing p 97.8 4.5E-05 9.9E-10 81.2 7.2 77 232-308 83-163 (243)
135 KOG0116 RasGAP SH3 binding pro 97.7 4E-05 8.8E-10 87.4 6.0 75 146-221 287-366 (419)
136 PF04059 RRM_2: RNA recognitio 97.6 0.00025 5.5E-09 65.7 8.3 73 148-220 2-85 (97)
137 KOG0116 RasGAP SH3 binding pro 97.6 7.9E-05 1.7E-09 85.1 5.9 74 233-307 289-367 (419)
138 PF11608 Limkain-b1: Limkain b 97.6 0.00023 5.1E-09 63.8 7.4 70 148-222 3-77 (90)
139 KOG1548 Transcription elongati 97.5 0.00013 2.9E-09 79.8 6.6 74 232-305 134-219 (382)
140 KOG4209 Splicing factor RNPS1, 97.5 0.00011 2.4E-09 78.2 5.5 77 230-307 99-180 (231)
141 KOG4307 RNA binding protein RB 97.5 0.00016 3.5E-09 84.6 7.0 171 137-308 301-515 (944)
142 KOG0226 RNA-binding proteins [ 97.5 0.00012 2.5E-09 77.4 5.3 75 145-219 188-267 (290)
143 KOG1365 RNA-binding protein Fu 97.5 0.00088 1.9E-08 74.2 12.0 159 146-306 59-242 (508)
144 KOG4211 Splicing factor hnRNP- 97.5 0.00097 2.1E-08 76.1 12.5 153 145-299 101-350 (510)
145 KOG4676 Splicing factor, argin 97.4 0.00011 2.4E-09 81.2 4.1 147 148-296 8-215 (479)
146 PF11608 Limkain-b1: Limkain b 97.4 0.00057 1.2E-08 61.4 7.1 68 233-305 3-75 (90)
147 KOG4209 Splicing factor RNPS1, 97.3 0.00023 5E-09 75.7 5.1 78 142-220 96-178 (231)
148 PF08777 RRM_3: RNA binding mo 97.3 0.00045 9.8E-09 64.9 5.6 77 234-311 3-84 (105)
149 KOG4454 RNA binding protein (R 97.2 0.00016 3.6E-09 74.8 2.3 76 231-307 8-87 (267)
150 KOG0128 RNA-binding protein SA 96.7 0.00033 7.1E-09 84.0 -0.3 154 147-301 571-741 (881)
151 COG5175 MOT2 Transcriptional r 96.7 0.0022 4.7E-08 70.1 5.8 75 148-222 115-203 (480)
152 KOG0115 RNA-binding protein p5 96.6 0.003 6.6E-08 67.1 5.4 87 195-292 5-95 (275)
153 KOG1855 Predicted RNA-binding 96.6 0.0026 5.6E-08 71.6 5.0 76 228-303 227-320 (484)
154 COG5175 MOT2 Transcriptional r 96.5 0.0088 1.9E-07 65.5 8.3 81 233-313 115-209 (480)
155 KOG1295 Nonsense-mediated deca 96.4 0.0019 4.1E-08 72.1 2.5 75 681-756 5-81 (376)
156 KOG1995 Conserved Zn-finger pr 96.3 0.0033 7.1E-08 69.6 4.1 79 144-222 63-154 (351)
157 PF08777 RRM_3: RNA binding mo 96.3 0.011 2.4E-07 55.6 6.7 59 148-207 2-60 (105)
158 KOG1995 Conserved Zn-finger pr 96.2 0.0033 7.2E-08 69.6 3.6 77 232-308 66-155 (351)
159 KOG1855 Predicted RNA-binding 96.2 0.0045 9.7E-08 69.7 4.6 76 140-216 224-318 (484)
160 PF14605 Nup35_RRM_2: Nup53/35 96.2 0.0096 2.1E-07 49.2 5.4 52 148-201 2-53 (53)
161 PF14605 Nup35_RRM_2: Nup53/35 96.1 0.0079 1.7E-07 49.7 4.5 52 233-286 2-53 (53)
162 KOG3152 TBP-binding protein, a 95.8 0.0075 1.6E-07 64.2 3.7 68 146-213 73-157 (278)
163 PF05172 Nup35_RRM: Nup53/35/4 95.8 0.02 4.4E-07 53.4 6.2 72 232-305 6-90 (100)
164 KOG4307 RNA binding protein RB 95.6 0.02 4.3E-07 67.8 6.5 70 234-303 869-943 (944)
165 KOG4210 Nuclear localization s 95.6 0.0098 2.1E-07 65.4 3.8 78 146-224 183-266 (285)
166 KOG2416 Acinus (induces apopto 95.6 0.021 4.5E-07 66.8 6.3 81 230-311 442-526 (718)
167 KOG3152 TBP-binding protein, a 95.4 0.0063 1.4E-07 64.7 1.5 68 231-298 73-157 (278)
168 KOG0112 Large RNA-binding prot 95.4 0.051 1.1E-06 66.3 8.9 80 143-223 451-532 (975)
169 KOG1996 mRNA splicing factor [ 95.3 0.032 7E-07 60.4 6.1 64 246-309 300-369 (378)
170 KOG2193 IGF-II mRNA-binding pr 95.1 0.025 5.3E-07 63.8 4.9 76 233-311 2-80 (584)
171 KOG2202 U2 snRNP splicing fact 95.1 0.0092 2E-07 63.6 1.5 65 247-311 83-152 (260)
172 PF07576 BRAP2: BRCA1-associat 95.0 0.12 2.6E-06 49.2 8.6 85 682-769 11-96 (110)
173 PF05172 Nup35_RRM: Nup53/35/4 94.9 0.069 1.5E-06 50.0 6.4 72 146-219 5-89 (100)
174 KOG2314 Translation initiation 94.7 0.059 1.3E-06 62.8 6.6 71 146-216 57-138 (698)
175 KOG0804 Cytoplasmic Zn-finger 94.5 0.11 2.4E-06 59.4 8.0 81 683-767 74-154 (493)
176 KOG4849 mRNA cleavage factor I 94.4 0.036 7.8E-07 61.1 3.9 70 147-216 80-156 (498)
177 PF08952 DUF1866: Domain of un 94.4 0.097 2.1E-06 52.0 6.4 76 231-310 26-110 (146)
178 KOG2314 Translation initiation 93.9 0.068 1.5E-06 62.3 4.9 72 232-303 58-140 (698)
179 KOG2416 Acinus (induces apopto 93.7 0.053 1.2E-06 63.5 3.7 78 141-219 438-519 (718)
180 KOG2202 U2 snRNP splicing fact 93.7 0.036 7.9E-07 59.2 2.1 57 163-219 84-145 (260)
181 PF15023 DUF4523: Protein of u 93.4 0.3 6.6E-06 48.3 7.8 77 141-220 80-160 (166)
182 KOG0129 Predicted RNA-binding 92.6 0.24 5.2E-06 57.6 6.7 62 142-203 365-432 (520)
183 PF08952 DUF1866: Domain of un 92.6 0.31 6.6E-06 48.6 6.5 74 144-221 24-106 (146)
184 KOG4676 Splicing factor, argin 92.3 0.28 6.1E-06 55.2 6.6 72 233-305 8-87 (479)
185 PF15023 DUF4523: Protein of u 91.4 0.48 1E-05 47.0 6.3 74 229-305 83-160 (166)
186 PF04847 Calcipressin: Calcipr 90.6 0.36 7.8E-06 50.0 5.0 63 245-308 8-72 (184)
187 KOG2591 c-Mpl binding protein, 90.5 0.43 9.3E-06 55.9 5.8 78 137-216 165-246 (684)
188 KOG1996 mRNA splicing factor [ 90.3 0.48 1E-05 51.7 5.7 74 146-219 280-364 (378)
189 KOG2135 Proteins containing th 90.0 0.28 6.1E-06 56.4 3.8 70 237-308 377-447 (526)
190 KOG2591 c-Mpl binding protein, 89.2 0.72 1.6E-05 54.1 6.3 94 196-301 149-246 (684)
191 KOG2068 MOT2 transcription fac 87.7 0.27 5.8E-06 54.6 1.7 76 148-223 78-164 (327)
192 KOG4849 mRNA cleavage factor I 87.3 0.57 1.2E-05 52.0 3.8 71 234-304 82-159 (498)
193 PF03467 Smg4_UPF3: Smg-4/UPF3 87.1 1.6 3.4E-05 45.0 6.7 74 232-305 7-96 (176)
194 PF08675 RNA_bind: RNA binding 85.8 2.2 4.7E-05 38.9 6.0 55 148-206 10-64 (87)
195 PF04847 Calcipressin: Calcipr 85.5 1.4 3.1E-05 45.6 5.5 61 160-221 8-70 (184)
196 PF08675 RNA_bind: RNA binding 85.1 3.2 6.9E-05 37.8 6.7 55 234-291 10-64 (87)
197 KOG2068 MOT2 transcription fac 84.7 0.38 8.2E-06 53.5 0.9 79 233-311 78-167 (327)
198 PF10309 DUF2414: Protein of u 83.8 4.5 9.7E-05 34.8 6.8 51 148-204 6-62 (62)
199 KOG4574 RNA-binding protein (c 82.5 0.74 1.6E-05 56.3 2.2 74 234-308 300-375 (1007)
200 KOG0115 RNA-binding protein p5 82.2 1.3 2.8E-05 47.8 3.6 60 148-207 32-95 (275)
201 PF07292 NID: Nmi/IFP 35 domai 79.7 3 6.5E-05 38.3 4.6 68 187-254 1-74 (88)
202 KOG4483 Uncharacterized conser 79.5 2.9 6.2E-05 47.5 5.3 52 146-202 390-445 (528)
203 PF10309 DUF2414: Protein of u 77.8 6 0.00013 34.1 5.6 53 233-289 6-62 (62)
204 PF10567 Nab6_mRNP_bdg: RNA-re 75.6 35 0.00077 37.8 12.0 147 143-290 11-212 (309)
205 KOG4574 RNA-binding protein (c 75.1 1.9 4.1E-05 53.0 2.5 71 152-223 303-375 (1007)
206 KOG4285 Mitotic phosphoprotein 75.1 4.5 9.8E-05 44.6 5.1 63 148-213 198-260 (350)
207 PF03880 DbpA: DbpA RNA bindin 74.4 6 0.00013 34.7 4.9 58 243-304 12-74 (74)
208 PF14111 DUF4283: Domain of un 73.9 3.3 7.2E-05 40.4 3.6 105 158-266 28-139 (153)
209 KOG2135 Proteins containing th 73.8 2.5 5.5E-05 49.0 3.0 78 143-222 368-446 (526)
210 KOG4285 Mitotic phosphoprotein 73.4 7 0.00015 43.2 6.0 74 232-308 197-271 (350)
211 PF11767 SET_assoc: Histone ly 68.6 15 0.00032 32.0 5.9 55 158-216 11-65 (66)
212 PF07576 BRAP2: BRCA1-associat 68.5 25 0.00055 33.6 8.0 65 146-210 12-80 (110)
213 KOG2253 U1 snRNP complex, subu 67.6 3.7 7.9E-05 49.5 2.6 70 230-303 38-107 (668)
214 KOG2253 U1 snRNP complex, subu 62.2 5.8 0.00013 47.8 2.9 73 142-218 35-107 (668)
215 KOG2318 Uncharacterized conser 58.2 31 0.00068 41.3 7.8 130 141-303 168-304 (650)
216 KOG0804 Cytoplasmic Zn-finger 53.7 56 0.0012 38.2 8.7 65 147-211 74-142 (493)
217 PF11767 SET_assoc: Histone ly 53.2 46 0.001 29.0 6.2 55 243-301 11-65 (66)
218 KOG4019 Calcineurin-mediated s 49.7 21 0.00046 37.0 4.2 73 234-307 12-90 (193)
219 PF03880 DbpA: DbpA RNA bindin 48.8 57 0.0012 28.5 6.3 58 158-219 12-74 (74)
220 KOG4019 Calcineurin-mediated s 30.0 38 0.00083 35.2 2.4 73 148-221 11-89 (193)
221 KOG4410 5-formyltetrahydrofola 29.1 52 0.0011 36.4 3.3 48 147-195 330-378 (396)
222 KOG2891 Surface glycoprotein [ 28.7 38 0.00083 37.1 2.3 62 148-209 150-247 (445)
223 KOG2891 Surface glycoprotein [ 24.2 23 0.00049 38.8 -0.4 75 233-307 150-268 (445)
224 KOG4483 Uncharacterized conser 22.4 1.4E+02 0.0031 34.6 5.3 56 232-288 391-446 (528)
225 PRK14548 50S ribosomal protein 20.0 1.9E+02 0.0041 26.5 4.7 54 151-204 24-81 (84)
No 1
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=8.1e-74 Score=636.37 Aligned_cols=522 Identities=45% Similarity=0.635 Sum_probs=376.2
Q ss_pred CCccccccCCCcccc-cCCchhhhhcccccccCCcCCCCCccCccccCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhc
Q 003036 92 MDDLDFFSSVGGMDL-GNDSSYVAQKKSEICIGFSNHELGVCNGAVAGEHLNDEHPSRTLLLRKINSNIEDSELKALFEQ 170 (854)
Q Consensus 92 ~Ed~DlFss~GGmeL-~Des~s~g~~~~~~~~~~~~G~~~~~ng~~~ge~p~~e~psrtLfVgNLP~~vTEedL~elFsq 170 (854)
+||+|+|+.+|||++ +|.-......... ...++...+++|..+ +++ || .+|..+|++
T Consensus 1 ~~d~~lf~~~G~~el~~~~~~~~~~~~~~----------~n~~~~~~~~~P~~~--s~~-~~---------~~l~a~f~~ 58 (549)
T KOG4660|consen 1 LEDCDLFSSGGGMELDADSFDNLSVRNSD----------RNSAGFVFPEHPPGE--SRT-FV---------SELSALFEP 58 (549)
T ss_pred CCccccccCCCCCCcccccccchhhcccc----------cCCCccccCCCCCCC--CCC-Ch---------hhHHhhhhc
Confidence 478899999999999 7732222221111 134556788888877 666 87 788899998
Q ss_pred cCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCCCCCCcccccccceeeecCCCCCCHHHHh
Q 003036 171 YGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELH 250 (854)
Q Consensus 171 fG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~svTeedLr 250 (854)
|+ +.+ +++++.+++.++++|+|.|||.+|++++|+
T Consensus 59 ~~----------------------------------~p~-----------~~~np~~~~~~~~~L~v~nl~~~Vsn~~L~ 93 (549)
T KOG4660|consen 59 FN----------------------------------KPL-----------RPDNPSEKDMNQGTLVVFNLPRSVSNDTLL 93 (549)
T ss_pred cC----------------------------------CCC-----------CcCCCCcccCccceEEEEecCCcCCHHHHH
Confidence 81 111 115556677889999999999999999999
Q ss_pred hhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCchhhhHhhhcCCcchhhcccCCCC
Q 003036 251 HIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGLRKCLANQLPPELEQEECGSYQ 330 (854)
Q Consensus 251 eiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~~Rr~l~qQ~~~~~~q~e~~~~~ 330 (854)
++|+.||+|++|+++...++.+||+|.|+.+|++|+++|++.+|.|++|+ ++.+.++.+.-|.. ..-.-.
T Consensus 94 ~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k----~~~~~~~~~~~~~~------~~~~~~ 163 (549)
T KOG4660|consen 94 RIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK----RPGGARRAMGLQSG------TSFLNH 163 (549)
T ss_pred HHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc----CCCcccccchhccc------chhhhh
Confidence 99999999999999999999999999999999999999999999999999 77777763323322 111122
Q ss_pred CCCCCCCCCCCCCcCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCccccCccCCCCCcccccccCCCccccCCCCcccc
Q 003036 331 QQNSPPNKPTNESAGAFAHGSKSSRITDTCIVSVVPSAVKAPPTESAFHLGISSSVPSLVRMESFGTQSALAEPGHLQGQ 410 (854)
Q Consensus 331 ~gsp~~nsPps~~~g~~p~~~~~s~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (854)
.+.|.+++||+.|.-..-=+++ .|..... +....+++ .....+...+.-.|
T Consensus 164 ~~~p~a~s~pgg~~~~~~~g~l------------------~P~~s~~-~~~~~~~~----~~~~~~~~~~~~~h------ 214 (549)
T KOG4660|consen 164 FGSPLANSPPGGWPRGQLFGML------------------SPTRSSI-LLEHISSV----DGSSPGRETPLLNH------ 214 (549)
T ss_pred ccchhhcCCCCCCcCCcceeee------------------ccchhhh-hhhcchhc----cCccccccccchhh------
Confidence 6788899999988611000111 1211111 11111111 00000001111111
Q ss_pred cccccCCCCCCCCCCCccccCCCCCCccCCCCCCCCccCCCCCccccccccccccCCCCCcccccCCccccCCCCCCCCC
Q 003036 411 LKFNIRSTPSFHPHSLPECHDGLNKGVRCNSSGTKGANINIKPPEIIDSRHFSRVSSNGHSIGFTEGVFGSASNGSCPRP 490 (854)
Q Consensus 411 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 490 (854)
......+.+.+| ...+.+ + |.+ .++..++.+++
T Consensus 215 -----------------q~~~~~~~~~s~-------------------a~~~~~-~--G~~--------~s~~~~v~t~S 247 (549)
T KOG4660|consen 215 -----------------QRFVEFADNRSY-------------------AFSEPR-G--GFL--------ISNSSGVITFS 247 (549)
T ss_pred -----------------hhhhhhccccch-------------------hhcccC-C--cee--------cCCCCceEEec
Confidence 111111111111 001111 1 222 22233444444
Q ss_pred CCcccCCCCCCCCCCCCccCCCCCCccccccCCCCCccCCCCCCCCcccccccCCCCCcccCCCCCCCchhhhccccccC
Q 003036 491 GHQYSWNNSYCPQLPGMMWPNSPSLVSGIFNTYSPTRVHGLPRAPSHMVNTVLPIGSHHVGSAPTVDPSLWERQHAYVAE 570 (854)
Q Consensus 491 g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsap~~~~~~~~~~~~~~~~ 570 (854)
|+ +++| |++.++ + ++-+.+...+|||||+||+..
T Consensus 248 ~~-------------~g~~-------n~~~~~-r------------~~~~~~~~~~~~hi~~~Ps~~------------- 281 (549)
T KOG4660|consen 248 GP-------------GGVW-------NPFPSR-R------------QRQNSSSSHYEHHIGSAPSMH------------- 281 (549)
T ss_pred CC-------------Cccc-------CCcccc-c------------cccccCcccccCccCCCcccc-------------
Confidence 43 2466 344342 1 223344457799999999822
Q ss_pred CcccccCcccCcCCcccCCC-cccccccc--cccccccCCCCCCCCCCCCCCcccccccccccccCCCCccccCCCCCCC
Q 003036 571 SPEASGFHLGSHGSMRISNN-SLHSVEFV--SHNIFPCVGGNGMDMPLPSKNSVFQSHHQRSMMFSGRGQTIPLMNSFDP 647 (854)
Q Consensus 571 ~~~~~~~~~~~~g~~g~~~~-~~~~~~~~--~~~~~~~~~~n~~~~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~ 647 (854)
|+.+-+++++.+. ..+.|.-+ ....|.+..|++++.. ++++++.+..+....|.++.-+. ..++.
T Consensus 282 -------~l~~~~~~~f~~~s~~~~~~~~~~~n~g~~~~t~~~~e~~--s~n~~~e~~~rv~~~f~~~~~~~---~~~~~ 349 (549)
T KOG4660|consen 282 -------HLLSRISVGFNGGSGALEMNSNGQANQGFLTKTGNVTEFN--SKNVGMESSPRVPKNFEGRRSYT---SQNDY 349 (549)
T ss_pred -------cccccCccccCCCCCCccccccccCCCCccccCccccccc--CCCccccccCCCCcccccccccc---ccccc
Confidence 3334555666665 55544433 3346667899998877 89999999999999998876333 33444
Q ss_pred chh---hhhcccCCCCcCcccccccccchhhHhhCCCcceeEEeecCCCCCCHHHHHHHHHhhCCCcceeEEeccccccc
Q 003036 648 PNE---RARNRRNEGAVNQADKKQYELDIDRILRGEDNRTTLMIKNIPNKYTSKMLLAAIDERHKGTYDFIYLPIDFKNK 724 (854)
Q Consensus 648 ~~~---r~r~r~~~~~~~~~~~~~~~~d~~~i~~g~d~rTTvMirNIPnk~t~~~L~~~id~~~~g~yDf~Ylp~Df~~~ 724 (854)
..+ ..+.||.+....+.+++++.+|+.+|++|+|.|||+||||||||||++||++. ||.++|+|||+||||||+|+
T Consensus 350 ~~~~~~~~~~~Rtt~~i~ni~n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~-d~~~~gtYDFlYLPiDF~nk 428 (549)
T KOG4660|consen 350 PVELILNYRDRRTTVMIKNIPNKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAA-DEKNKGTYDFLYLPIDFKNK 428 (549)
T ss_pred ccccccccccchhhhhhhccccchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhh-hccccCccceEEeccccccc
Confidence 444 77778888777777899999999999999999999999999999999999999 99999999999999999999
Q ss_pred ceeEEEEEecCCccchHHHHHHhcCceecCCCCccEEEEEeeccccHHHHHHHhccCcccCCCCCccceEEecCCCCCCC
Q 003036 725 CNVGYAFINMTDPSQIVPFYQSFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFNTDGPNAGD 804 (854)
Q Consensus 725 ~N~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~s~K~~~v~yA~iQG~~al~~~f~~s~~~~~~~~~rP~~f~~~g~~~g~ 804 (854)
||||||||||++|+++++||++|+|++|++|+|+|||+|+|||||||++|++|||||++|||++.|+|++|++ |+.|.
T Consensus 429 cNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQGk~~Li~hFqnS~lm~E~e~y~Pvvf~p--p~dg~ 506 (549)
T KOG4660|consen 429 CNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQGKEALIEHFQNSSLMCEDEAYRPVVFSP--PEDGR 506 (549)
T ss_pred cccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhhchHHHHHHhhcccccccchhcCceEecC--ccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987 89999
Q ss_pred ccccCCCCCCcCCCCCCcccccc
Q 003036 805 QVPFPMGVNFRTRPGKARSVIHE 827 (854)
Q Consensus 805 ~~pfp~~~~~~~~~~~~~~~~~~ 827 (854)
++++|...+++.+.+..+.....
T Consensus 507 ~~~~p~~~~~~a~~~~s~~~~~~ 529 (549)
T KOG4660|consen 507 EEPEPVKLNQDAGAGHSTNASLK 529 (549)
T ss_pred ccCccccccccCCCCcccchhhh
Confidence 99999999999777776655543
No 2
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=100.00 E-value=4.1e-46 Score=339.73 Aligned_cols=97 Identities=65% Similarity=1.207 Sum_probs=96.4
Q ss_pred ceeEEeecCCCCCCHHHHHHHHHhhCCCcceeEEecccccccceeEEEEEecCCccchHHHHHHhcCceecCCCCccEEE
Q 003036 683 RTTLMIKNIPNKYTSKMLLAAIDERHKGTYDFIYLPIDFKNKCNVGYAFINMTDPSQIVPFYQSFNGKKWEKFNSEKVAS 762 (854)
Q Consensus 683 rTTvMirNIPnk~t~~~L~~~id~~~~g~yDf~Ylp~Df~~~~N~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~s~K~~~ 762 (854)
|||||||||||||||+||+++||+.|+|+||||||||||+++||+|||||||++++++++|++.|+|++|+.++|.|||+
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccccHHHHHHHhc
Q 003036 763 LAYARIQGKAALIAHFQ 779 (854)
Q Consensus 763 v~yA~iQG~~al~~~f~ 779 (854)
|+||||||++|||+|||
T Consensus 81 i~yAriQG~~alv~~f~ 97 (97)
T PF04059_consen 81 ISYARIQGKDALVEHFR 97 (97)
T ss_pred EehhHhhCHHHHHHhhC
Confidence 99999999999999997
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.95 E-value=7.4e-27 Score=258.79 Aligned_cols=164 Identities=23% Similarity=0.425 Sum_probs=146.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeee
Q 003036 142 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (854)
Q Consensus 142 ~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V 216 (854)
......++|||+|||+++++++|+++|++||+|++|+ .+++++|||||+|.++++|++|++.|++..|.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 3556789999999999999999999999999999887 36778999999999999999999999999999999999
Q ss_pred eecCCCCCCCcccccccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCC
Q 003036 217 HYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNS 291 (854)
Q Consensus 217 ~~a~pk~~~~~~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG 291 (854)
.|+.+.... ....+|||.|||..+++++|+++|++||+|+.|++ ++++++||||+|.+.++|++||+.||+
T Consensus 182 ~~a~p~~~~----~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng 257 (346)
T TIGR01659 182 SYARPGGES----IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNN 257 (346)
T ss_pred ecccccccc----cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 998765432 23468999999999999999999999999998776 455679999999999999999999999
Q ss_pred ceeCC--eEEEEEeccCchh
Q 003036 292 RYIAG--KQIKLEPSHLRGL 309 (854)
Q Consensus 292 ~~I~G--k~IkV~~a~pk~~ 309 (854)
..+.+ ++|+|.+++....
T Consensus 258 ~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 258 VIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred CccCCCceeEEEEECCcccc
Confidence 98876 7999999987553
No 4
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=3.8e-26 Score=236.54 Aligned_cols=217 Identities=18% Similarity=0.314 Sum_probs=178.2
Q ss_pred hhhhhhhhccCCCCC-chhhcccccCCCcccCCCCCCCCCCCCccccccCCCcccccCCchhhhhcccccccCCcCCCCC
Q 003036 52 EEIEAQTIGNLLPDD-DDLFSGVTDGLECTVHPSGGSGGDDMDDLDFFSSVGGMDLGNDSSYVAQKKSEICIGFSNHELG 130 (854)
Q Consensus 52 ee~e~~~IGnlLpdd-Ddllsgv~d~~~~~~~~~~~ss~dd~Ed~DlFss~GGmeL~Des~s~g~~~~~~~~~~~~G~~~ 130 (854)
+|...+++|||.++. ||+|+.++..+|.+...+ -+|. |+
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k-----------~i~~-----e~------------------------ 43 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTK-----------VIFD-----EL------------------------ 43 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccce-----------eehh-----hh------------------------
Confidence 456788999999997 999999999998887665 1221 11
Q ss_pred ccCcccc-CCCC-CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCccccceEEEeeCCHHHHHHHHHH
Q 003036 131 VCNGAVA-GEHL-NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKS 203 (854)
Q Consensus 131 ~~ng~~~-ge~p-~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~ 203 (854)
..+|+.. +... ......--|||+.|.++++-++|++.|.+||+|.+++ .+.|+|||+||.|...++|++||..
T Consensus 44 ~v~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~ 123 (321)
T KOG0148|consen 44 KVNWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQ 123 (321)
T ss_pred ccccccCcccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHH
Confidence 0111100 0001 1112256799999999999999999999999998876 4899999999999999999999999
Q ss_pred hcceecCCceeeeeecCCCCCCCc------------ccccccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccE
Q 003036 204 LQNKLTRSGKLDIHYSIPKDNPSE------------KEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQ 271 (854)
Q Consensus 204 Lng~~L~Gr~L~V~~a~pk~~~~~------------~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~ 271 (854)
|+|+.|.+|.|+-.|+..|..... .....++|||+||+..+++++|++.|++||.|.+||+ -+-+||
T Consensus 124 MnGqWlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRv-Fk~qGY 202 (321)
T KOG0148|consen 124 MNGQWLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRV-FKDQGY 202 (321)
T ss_pred hCCeeeccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEE-ecccce
Confidence 999999999999999987753211 1124569999999999999999999999999999998 446899
Q ss_pred EEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCchh
Q 003036 272 KYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGL 309 (854)
Q Consensus 272 AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~~ 309 (854)
+||+|++.|+|.+||..+|+.+|.|..++|.|.+..+.
T Consensus 203 aFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 203 AFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred EEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCC
Confidence 99999999999999999999999999999999987653
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.92 E-value=1.5e-24 Score=239.22 Aligned_cols=159 Identities=21% Similarity=0.374 Sum_probs=143.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecC
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~ 220 (854)
+..+|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|+.|.|++|+|.|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 4689999999999999999999999999999872 57789999999999999999999999999999999999998
Q ss_pred CCCCCCcccccccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 003036 221 PKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIA 295 (854)
Q Consensus 221 pk~~~~~~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~ 295 (854)
++... ....+|||+|||..+++++|+++|+.||.|..+++ ++..+|||||+|.+.++|++|++.|||..+.
T Consensus 82 ~~~~~----~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~ 157 (352)
T TIGR01661 82 PSSDS----IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPS 157 (352)
T ss_pred ccccc----cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccC
Confidence 76543 23458999999999999999999999999988776 3456899999999999999999999999988
Q ss_pred C--eEEEEEeccCch
Q 003036 296 G--KQIKLEPSHLRG 308 (854)
Q Consensus 296 G--k~IkV~~a~pk~ 308 (854)
| .+|.|.|+....
T Consensus 158 g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 158 GCTEPITVKFANNPS 172 (352)
T ss_pred CCceeEEEEECCCCC
Confidence 7 678999987655
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.92 E-value=2e-24 Score=253.65 Aligned_cols=174 Identities=19% Similarity=0.364 Sum_probs=151.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE----eCccccceEEEeeCCHHHHHHHHHHhcceecC----Cceee
Q 003036 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTR----SGKLD 215 (854)
Q Consensus 144 e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~----Gr~L~ 215 (854)
....++|||+|||.++++++|+++|++||+|..+. ..++++|||||+|.+.++|.+|++.|+++.+. |+.+.
T Consensus 175 ~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~ 254 (562)
T TIGR01628 175 LKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLY 254 (562)
T ss_pred ccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeE
Confidence 34567899999999999999999999999999887 34678999999999999999999999999999 99999
Q ss_pred eeecCCCCCCCc--------------ccccccceeeecCCCCCCHHHHhhhhcccCceeEeee----cCCcccEEEEEeC
Q 003036 216 IHYSIPKDNPSE--------------KEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFY 277 (854)
Q Consensus 216 V~~a~pk~~~~~--------------~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri----t~~skG~AFVeF~ 277 (854)
|.++.++.+... ......+|||+||+..+++++|+++|++||.|++|++ ++.++|||||+|.
T Consensus 255 v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~ 334 (562)
T TIGR01628 255 VGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFS 334 (562)
T ss_pred eecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeC
Confidence 998876654310 0113347999999999999999999999999999887 4667899999999
Q ss_pred CHHHHHHHHHHhCCceeCCeEEEEEeccCchhhh-HhhhcC
Q 003036 278 DTRAAEAALRELNSRYIAGKQIKLEPSHLRGLRK-CLANQL 317 (854)
Q Consensus 278 d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~~Rr-~l~qQ~ 317 (854)
+.++|.+|++.|||..|.|++|+|.++.+++.|+ .+++++
T Consensus 335 ~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~~~~~~~~~ 375 (562)
T TIGR01628 335 NPEEANRAVTEMHGRMLGGKPLYVALAQRKEQRRAHLQDQF 375 (562)
T ss_pred CHHHHHHHHHHhcCCeeCCceeEEEeccCcHHHHHHHHHHH
Confidence 9999999999999999999999999999998876 443443
No 7
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.92 E-value=1.4e-24 Score=252.98 Aligned_cols=163 Identities=14% Similarity=0.296 Sum_probs=143.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeec
Q 003036 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a 219 (854)
...++|||+|||+++++++|+++|++||+|.+|+ .+++++|||||+|.+.++|++|++.|+|..|.|++|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 3568999999999999999999999999999988 36789999999999999999999999999999999999865
Q ss_pred CCCCCCC-------cccccccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHH
Q 003036 220 IPKDNPS-------EKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALR 287 (854)
Q Consensus 220 ~pk~~~~-------~~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~ 287 (854)
....... .......+|||+||++++++++|+++|+.||.|+++++ ++.+||||||+|.+.++|.+|++
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~ 264 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 264 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHH
Confidence 4322110 11123458999999999999999999999999999887 34578999999999999999999
Q ss_pred HhCCceeCCeEEEEEeccCc
Q 003036 288 ELNSRYIAGKQIKLEPSHLR 307 (854)
Q Consensus 288 ~LNG~~I~Gk~IkV~~a~pk 307 (854)
.||+..|+|+.|+|.++.++
T Consensus 265 amNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 265 SMNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred HhCCCeeCCeEEEEEecCCC
Confidence 99999999999999988754
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.92 E-value=6e-24 Score=234.53 Aligned_cols=165 Identities=16% Similarity=0.295 Sum_probs=141.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCC--ceeeeee
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRS--GKLDIHY 218 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~G--r~L~V~~ 218 (854)
..++|||+|||+.+++++|+++|++||.|..++. ++.++|||||+|.+.++|++|++.|+|..+.| ++|.|.|
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 4678999999999999999999999999988772 45789999999999999999999999999877 5678887
Q ss_pred cCCCCCCCcc----------------------------------------------------------------------
Q 003036 219 SIPKDNPSEK---------------------------------------------------------------------- 228 (854)
Q Consensus 219 a~pk~~~~~~---------------------------------------------------------------------- 228 (854)
+........+
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 7433210000
Q ss_pred ------------------cccccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHH
Q 003036 229 ------------------EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAA 285 (854)
Q Consensus 229 ------------------~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kA 285 (854)
.....+|||+|||+++++++|+++|++||.|++|++ ++.+||||||+|.+.++|.+|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 000115999999999999999999999999999887 566899999999999999999
Q ss_pred HHHhCCceeCCeEEEEEeccCchhh
Q 003036 286 LRELNSRYIAGKQIKLEPSHLRGLR 310 (854)
Q Consensus 286 l~~LNG~~I~Gk~IkV~~a~pk~~R 310 (854)
++.|||..|.||+|+|.|...+..|
T Consensus 328 i~~lnG~~~~gr~i~V~~~~~~~~~ 352 (352)
T TIGR01661 328 ILSLNGYTLGNRVLQVSFKTNKAYR 352 (352)
T ss_pred HHHhCCCEECCeEEEEEEccCCCCC
Confidence 9999999999999999999887643
No 9
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=1.3e-23 Score=229.69 Aligned_cols=164 Identities=21% Similarity=0.392 Sum_probs=141.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhcceecC-Cceeeeee
Q 003036 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTR-SGKLDIHY 218 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~-Gr~L~V~~ 218 (854)
.-.+.|||+.||.++.|++|.-+|++.|+|.+++ .++.+||||||.|.+.++|++|++.||+++|+ |+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 4578999999999999999999999999999998 47889999999999999999999999999885 77777754
Q ss_pred cCCC----------------------------------------------------------------------------
Q 003036 219 SIPK---------------------------------------------------------------------------- 222 (854)
Q Consensus 219 a~pk---------------------------------------------------------------------------- 222 (854)
+..+
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~ 240 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAI 240 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcc
Confidence 4211
Q ss_pred --------CCCCccc-ccccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 003036 223 --------DNPSEKE-INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRY 293 (854)
Q Consensus 223 --------~~~~~~~-~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~ 293 (854)
.+..+.. .....|||+||+.++|+|.|+++|++||.|..|+.. |.||||.|.+.++|.+|++.+||++
T Consensus 241 tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~---rDYaFVHf~eR~davkAm~~~ngke 317 (506)
T KOG0117|consen 241 TVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP---RDYAFVHFAEREDAVKAMKETNGKE 317 (506)
T ss_pred eeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecc---cceeEEeecchHHHHHHHHHhcCce
Confidence 1110000 023479999999999999999999999999998873 6799999999999999999999999
Q ss_pred eCCeEEEEEeccCchhhh
Q 003036 294 IAGKQIKLEPSHLRGLRK 311 (854)
Q Consensus 294 I~Gk~IkV~~a~pk~~Rr 311 (854)
|.|..|.|.+++|...++
T Consensus 318 ldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 318 LDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred ecCceEEEEecCChhhhc
Confidence 999999999999988665
No 10
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.90 E-value=2.6e-23 Score=237.75 Aligned_cols=163 Identities=23% Similarity=0.374 Sum_probs=143.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeee
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~ 217 (854)
.+.+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|+. |+|..+.|++|.|.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 4567899999999999999999999999999999883 57789999999999999999994 99999999999998
Q ss_pred ecCCCCCCCc--------ccccccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHH
Q 003036 218 YSIPKDNPSE--------KEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEA 284 (854)
Q Consensus 218 ~a~pk~~~~~--------~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~k 284 (854)
++........ ......+|||+|||..+++++|+++|+.||.|..|++ ++..+|||||+|.+.++|.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~ 243 (457)
T TIGR01622 164 SSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKE 243 (457)
T ss_pred ecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 8654322211 0122468999999999999999999999999999877 24678999999999999999
Q ss_pred HHHHhCCceeCCeEEEEEeccC
Q 003036 285 ALRELNSRYIAGKQIKLEPSHL 306 (854)
Q Consensus 285 Al~~LNG~~I~Gk~IkV~~a~p 306 (854)
|++.|||..|.|++|+|.|+..
T Consensus 244 A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 244 ALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHhcCCcEECCEEEEEEEccC
Confidence 9999999999999999999873
No 11
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.90 E-value=4.8e-23 Score=238.16 Aligned_cols=162 Identities=19% Similarity=0.223 Sum_probs=139.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHh--cceecCCceeeeeecCCCC
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSL--QNKLTRSGKLDIHYSIPKD 223 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~L--ng~~L~Gr~L~V~~a~pk~ 223 (854)
|+++|||+|||+++++++|+++|++||.|..|++ .+.|+||||+|.+.++|++|++.+ ++..|.|++|+|+|+..+.
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i-~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~ 79 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMM-LPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQE 79 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEE-ECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcc
Confidence 6899999999999999999999999999999985 357899999999999999999875 6788999999999987553
Q ss_pred CCCcc------cc--cccceeeecCCCCCCHHHHhhhhcccCceeEeeecCC-cccEEEEEeCCHHHHHHHHHHhCCcee
Q 003036 224 NPSEK------EI--NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQ-KIHQKYIEFYDTRAAEAALRELNSRYI 294 (854)
Q Consensus 224 ~~~~~------~~--~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~-skG~AFVeF~d~e~A~kAl~~LNG~~I 294 (854)
..... .. ...+|+|.||++.+++++|+++|+.||.|.+|.+..+ .+++|||+|.+.++|.+|++.|||..|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i 159 (481)
T TIGR01649 80 IKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADI 159 (481)
T ss_pred cccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcc
Confidence 21111 01 1237999999999999999999999999999887333 347999999999999999999999999
Q ss_pred CC--eEEEEEeccCch
Q 003036 295 AG--KQIKLEPSHLRG 308 (854)
Q Consensus 295 ~G--k~IkV~~a~pk~ 308 (854)
.+ ++|+|+|++++.
T Consensus 160 ~~~~~~l~v~~sk~~~ 175 (481)
T TIGR01649 160 YNGCCTLKIEYAKPTR 175 (481)
T ss_pred cCCceEEEEEEecCCC
Confidence 65 599999998754
No 12
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.90 E-value=3.9e-23 Score=242.78 Aligned_cols=158 Identities=20% Similarity=0.346 Sum_probs=141.0
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCCC
Q 003036 149 TLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKD 223 (854)
Q Consensus 149 tLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk~ 223 (854)
+|||+|||+++||++|+++|++||.|.+|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 7999999999999999999999999999873 57889999999999999999999999999999999999975332
Q ss_pred CCCcccccccceeeecCCCCCCHHHHhhhhcccCceeEeee----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 003036 224 NPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQI 299 (854)
Q Consensus 224 ~~~~~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~I 299 (854)
..+....++|||+|||.++++++|+++|+.||.|.+|++ .++++|||||+|.+.++|.+|++.|||..+.|+.|
T Consensus 82 --~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i 159 (562)
T TIGR01628 82 --SLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEV 159 (562)
T ss_pred --cccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceE
Confidence 222234568999999999999999999999999999877 34578999999999999999999999999999999
Q ss_pred EEEeccCch
Q 003036 300 KLEPSHLRG 308 (854)
Q Consensus 300 kV~~a~pk~ 308 (854)
.|....++.
T Consensus 160 ~v~~~~~~~ 168 (562)
T TIGR01628 160 YVGRFIKKH 168 (562)
T ss_pred EEecccccc
Confidence 998765544
No 13
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.90 E-value=7.8e-23 Score=236.41 Aligned_cols=164 Identities=22% Similarity=0.257 Sum_probs=141.2
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCC
Q 003036 144 EHPSRTLLLRKINS-NIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (854)
Q Consensus 144 e~psrtLfVgNLP~-~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk 222 (854)
..++++|||+|||+ .+++++|+++|++||.|..|+.....+|||||+|.+.++|++|++.|+|..|.|++|+|.++...
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 45788999999998 69999999999999999999964456899999999999999999999999999999999987543
Q ss_pred CCCCc------------c---------------------cccccceeeecCCCCCCHHHHhhhhcccCc--eeEeeecCC
Q 003036 223 DNPSE------------K---------------------EINQGTLVVFNLDSSVSNDELHHIFGVYGE--IKEIRETPQ 267 (854)
Q Consensus 223 ~~~~~------------~---------------------~~~~~tLfV~NLp~svTeedLreiFs~fG~--I~~Vrit~~ 267 (854)
..... + ..+..+|||+|||.++++++|+++|+.||. |+.|++...
T Consensus 352 ~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~ 431 (481)
T TIGR01649 352 NVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPK 431 (481)
T ss_pred cccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecC
Confidence 11000 0 013458999999999999999999999998 788877433
Q ss_pred ---cccEEEEEeCCHHHHHHHHHHhCCceeCCeE------EEEEeccCc
Q 003036 268 ---KIHQKYIEFYDTRAAEAALRELNSRYIAGKQ------IKLEPSHLR 307 (854)
Q Consensus 268 ---skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~------IkV~~a~pk 307 (854)
++++|||+|.+.++|.+|+..|||..|.++. |+|.|++++
T Consensus 432 ~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 432 DNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 3789999999999999999999999999985 999999764
No 14
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=2.8e-23 Score=226.15 Aligned_cols=176 Identities=20% Similarity=0.356 Sum_probs=147.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhccee-cCC--ceee
Q 003036 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKL-TRS--GKLD 215 (854)
Q Consensus 144 e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~-L~G--r~L~ 215 (854)
+...-+|||+-||+.++|+||+++|++||.|.+|. .++.++|||||.|+++++|.+|+.+|++.. |.| .+|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 35567999999999999999999999999998886 578899999999999999999999999865 665 4677
Q ss_pred eeecCCCCCCCcccccccceeeecCCCCCCHHHHhhhhcccCceeEeee----cCCcccEEEEEeCCHHHHHHHHHHhCC
Q 003036 216 IHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNS 291 (854)
Q Consensus 216 V~~a~pk~~~~~~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri----t~~skG~AFVeF~d~e~A~kAl~~LNG 291 (854)
|+|+....+. -....+|||+-|++.++|.|++++|++||.|++|+| .+.+||||||+|.+.|.|..||++|||
T Consensus 111 vk~Ad~E~er---~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng 187 (510)
T KOG0144|consen 111 VKYADGERER---IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNG 187 (510)
T ss_pred ecccchhhhc---cccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhcc
Confidence 7777544332 234679999999999999999999999999999887 566899999999999999999999999
Q ss_pred c-eeCC--eEEEEEeccCchhhh--HhhhcCCcchh
Q 003036 292 R-YIAG--KQIKLEPSHLRGLRK--CLANQLPPELE 322 (854)
Q Consensus 292 ~-~I~G--k~IkV~~a~pk~~Rr--~l~qQ~~~~~~ 322 (854)
. .+.| .+|.|.|+.++..|. +++++.+..+.
T Consensus 188 ~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~q 223 (510)
T KOG0144|consen 188 TQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQ 223 (510)
T ss_pred ceeeccCCCceEEEecccCCCchHHHHHhhhHHHHH
Confidence 6 4666 799999998877553 55333333333
No 15
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.89 E-value=2.3e-22 Score=234.18 Aligned_cols=161 Identities=21% Similarity=0.370 Sum_probs=134.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE----eCccccceEEEeeCCHHHHHHHHHHhcceecC-CceeeeeecC
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTR-SGKLDIHYSI 220 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~-Gr~L~V~~a~ 220 (854)
..++|||+|||++++|++|+++|++||.|..|+ .+++++|||||+|.+.++|++||+.|++..+. |+.|.|..+.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 458999999999999999999999999999987 36789999999999999999999999987774 5544332221
Q ss_pred --------------------------------------------------------------------------------
Q 003036 221 -------------------------------------------------------------------------------- 220 (854)
Q Consensus 221 -------------------------------------------------------------------------------- 220 (854)
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~V 216 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAV 216 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEE
Confidence
Q ss_pred ----CCCCCCcc-cccccceeeecCCCCCCHHHHhhhhccc--CceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 003036 221 ----PKDNPSEK-EINQGTLVVFNLDSSVSNDELHHIFGVY--GEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRY 293 (854)
Q Consensus 221 ----pk~~~~~~-~~~~~tLfV~NLp~svTeedLreiFs~f--G~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~ 293 (854)
++....+. .....+|||+||+.++++++|+++|+.| |+|+.|++ .++||||+|.+.++|++|++.|||.+
T Consensus 217 dwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~---~rgfAFVeF~s~e~A~kAi~~lnG~~ 293 (578)
T TIGR01648 217 DWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKK---IRDYAFVHFEDREDAVKAMDELNGKE 293 (578)
T ss_pred EeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEe---ecCeEEEEeCCHHHHHHHHHHhCCCE
Confidence 00000000 0013479999999999999999999999 99999987 36799999999999999999999999
Q ss_pred eCCeEEEEEeccCchh
Q 003036 294 IAGKQIKLEPSHLRGL 309 (854)
Q Consensus 294 I~Gk~IkV~~a~pk~~ 309 (854)
|.|++|+|+|++++..
T Consensus 294 i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 294 LEGSEIEVTLAKPVDK 309 (578)
T ss_pred ECCEEEEEEEccCCCc
Confidence 9999999999998653
No 16
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.88 E-value=7.7e-22 Score=228.46 Aligned_cols=163 Identities=15% Similarity=0.233 Sum_probs=136.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcc------------CCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceec
Q 003036 142 NDEHPSRTLLLRKINSNIEDSELKALFEQY------------GDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLT 209 (854)
Q Consensus 142 ~~e~psrtLfVgNLP~~vTEedL~elFsqf------------G~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L 209 (854)
......++|||+|||+++++++|+++|.+| +.|..+.. .+.+|||||+|.+.++|.+|| +|+|..|
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-~~~kg~afVeF~~~e~A~~Al-~l~g~~~ 247 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-NKEKNFAFLEFRTVEEATFAM-ALDSIIY 247 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-CCCCCEEEEEeCCHHHHhhhh-cCCCeEe
Confidence 345678999999999999999999999975 24444444 678999999999999999999 6999999
Q ss_pred CCceeeeeecCCCCCCC-------------------------cccccccceeeecCCCCCCHHHHhhhhcccCceeEeee
Q 003036 210 RSGKLDIHYSIPKDNPS-------------------------EKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE 264 (854)
Q Consensus 210 ~Gr~L~V~~a~pk~~~~-------------------------~~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri 264 (854)
.|+.|+|.......... .......+|||+|||..+++++|+++|+.||.|..+.+
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~ 327 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL 327 (509)
T ss_pred eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 99999996432111000 00012358999999999999999999999999998766
Q ss_pred -----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 003036 265 -----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (854)
Q Consensus 265 -----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~p 306 (854)
++.++|||||+|.+.++|.+|++.|||..|.|++|+|.++..
T Consensus 328 ~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 328 IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 466789999999999999999999999999999999999864
No 17
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=3.3e-22 Score=206.03 Aligned_cols=163 Identities=21% Similarity=0.373 Sum_probs=147.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeec
Q 003036 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a 219 (854)
...++|.|.-||..+|++||+.+|...|+|++|+ .++.+.||+||.|.+++||++|+..|||..+..+.|+|.|+
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 3457899999999999999999999999999998 57889999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 003036 220 IPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYI 294 (854)
Q Consensus 220 ~pk~~~~~~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I 294 (854)
+|..+.. ....|||.+||..+|..||.++|++||.|..-|+ ++.+||.+||+|+...+|++||+.|||..-
T Consensus 119 RPSs~~I----k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P 194 (360)
T KOG0145|consen 119 RPSSDSI----KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKP 194 (360)
T ss_pred cCChhhh----cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCC
Confidence 9876543 3468999999999999999999999999876444 788999999999999999999999999987
Q ss_pred CC--eEEEEEeccCchhhh
Q 003036 295 AG--KQIKLEPSHLRGLRK 311 (854)
Q Consensus 295 ~G--k~IkV~~a~pk~~Rr 311 (854)
.| .+|.|.|+....+++
T Consensus 195 ~g~tepItVKFannPsq~t 213 (360)
T KOG0145|consen 195 SGCTEPITVKFANNPSQKT 213 (360)
T ss_pred CCCCCCeEEEecCCccccc
Confidence 66 789999998776554
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.85 E-value=1.7e-20 Score=217.39 Aligned_cols=163 Identities=18% Similarity=0.305 Sum_probs=136.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeec
Q 003036 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a 219 (854)
...++|||+|||..+++++|+++|++||.|..+. .+++++|||||+|.+.++|.+|++.|+|..|.|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3468999999999999999999999999998876 25779999999999999999999999999999999999998
Q ss_pred CCCCCCCc------------------------ccccccceeeecCCCC--C--------CHHHHhhhhcccCceeEeeec
Q 003036 220 IPKDNPSE------------------------KEINQGTLVVFNLDSS--V--------SNDELHHIFGVYGEIKEIRET 265 (854)
Q Consensus 220 ~pk~~~~~------------------------~~~~~~tLfV~NLp~s--v--------TeedLreiFs~fG~I~~Vrit 265 (854)
........ ...+..+|+|.|+... + ..++|+++|++||.|+.|++.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~ 452 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIP 452 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEee
Confidence 54321100 0113457899999642 1 236799999999999999873
Q ss_pred C--------CcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCc
Q 003036 266 P--------QKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 307 (854)
Q Consensus 266 ~--------~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk 307 (854)
. ...|++||+|.++++|++|+.+|||..|.|+.|.|.|....
T Consensus 453 ~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~ 502 (509)
T TIGR01642 453 RPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGED 502 (509)
T ss_pred ccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCHH
Confidence 2 23589999999999999999999999999999999998653
No 19
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.85 E-value=5e-21 Score=189.41 Aligned_cols=161 Identities=20% Similarity=0.289 Sum_probs=142.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecC
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~ 220 (854)
...||||+||+..++++.|.++|-+.|+|..++ .+.+.+|||||+|.++|+|+-|++.|+...|.||+|+|.-+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 457999999999999999999999999999998 467899999999999999999999999999999999998776
Q ss_pred CCCCCCcccccccceeeecCCCCCCHHHHhhhhcccCceeE----ee--ecCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 003036 221 PKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKE----IR--ETPQKIHQKYIEFYDTRAAEAALRELNSRYI 294 (854)
Q Consensus 221 pk~~~~~~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~----Vr--it~~skG~AFVeF~d~e~A~kAl~~LNG~~I 294 (854)
.. ..+.....+|||+||++.+++..|.+.|+.||.|.. ++ .++.++++|||.|.+.+.+.+|+..|||+.+
T Consensus 88 ~~---~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l 164 (203)
T KOG0131|consen 88 AH---QKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYL 164 (203)
T ss_pred cc---cccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchh
Confidence 21 112223468999999999999999999999999866 22 2678899999999999999999999999999
Q ss_pred CCeEEEEEeccCchh
Q 003036 295 AGKQIKLEPSHLRGL 309 (854)
Q Consensus 295 ~Gk~IkV~~a~pk~~ 309 (854)
..++|.|+++..++.
T Consensus 165 ~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 165 CNRPITVSYAFKKDT 179 (203)
T ss_pred cCCceEEEEEEecCC
Confidence 999999999987653
No 20
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.83 E-value=7.5e-21 Score=199.07 Aligned_cols=148 Identities=24% Similarity=0.343 Sum_probs=138.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCCCCCCc
Q 003036 148 RTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDNPSE 227 (854)
Q Consensus 148 rtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk~~~~~ 227 (854)
-+|||+|||.++++.+|+.+|++||+|.+|.+ -|.||||..++...|+.|++.|++..|+|..|.|+-++.|.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDI---vKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs---- 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDI---VKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS---- 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeee---ecccceEEeecccccHHHHhhcccceecceEEEEEeccccC----
Confidence 47999999999999999999999999999986 57899999999999999999999999999999999887662
Q ss_pred ccccccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCc
Q 003036 228 KEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 307 (854)
Q Consensus 228 ~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk 307 (854)
....+|+|+||.+.++.+||+..|++||.|.++++ -++|+||.|+-.++|..|++.||+.++.|++++|.++..+
T Consensus 76 --k~stkl~vgNis~tctn~ElRa~fe~ygpviecdi---vkdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 76 --KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDI---VKDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred --CCccccccCCCCccccCHHHhhhhcccCCceeeee---ecceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 34568999999999999999999999999999998 5789999999999999999999999999999999998763
No 21
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.82 E-value=1.6e-19 Score=206.55 Aligned_cols=163 Identities=22% Similarity=0.334 Sum_probs=137.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecC
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~ 220 (854)
..++|||+|||..+++++|+++|++||.|..|.. +++++|||||+|.+.++|.+|++.|+|..|.|++|.|.|+.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 3789999999999999999999999999998872 45789999999999999999999999999999999999953
Q ss_pred CCCCCC----------------------------------c---------------------------------------
Q 003036 221 PKDNPS----------------------------------E--------------------------------------- 227 (854)
Q Consensus 221 pk~~~~----------------------------------~--------------------------------------- 227 (854)
...... .
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (457)
T TIGR01622 265 DSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGAL 344 (457)
T ss_pred CCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccccccccccccccccccc
Confidence 210000 0
Q ss_pred -------------ccccccceeeecCCCCCC----------HHHHhhhhcccCceeEeeec-CCcccEEEEEeCCHHHHH
Q 003036 228 -------------KEINQGTLVVFNLDSSVS----------NDELHHIFGVYGEIKEIRET-PQKIHQKYIEFYDTRAAE 283 (854)
Q Consensus 228 -------------~~~~~~tLfV~NLp~svT----------eedLreiFs~fG~I~~Vrit-~~skG~AFVeF~d~e~A~ 283 (854)
......+|+|.||....+ .+||++.|++||.|++|.+. +...|++||+|.++++|.
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~ 424 (457)
T TIGR01622 345 AIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAAL 424 (457)
T ss_pred ccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHH
Confidence 001234688888855443 36899999999999999884 677899999999999999
Q ss_pred HHHHHhCCceeCCeEEEEEeccCch
Q 003036 284 AALRELNSRYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 284 kAl~~LNG~~I~Gk~IkV~~a~pk~ 308 (854)
+|++.|||..|+|+.|.|.|.....
T Consensus 425 ~A~~~lnGr~f~gr~i~~~~~~~~~ 449 (457)
T TIGR01622 425 AAFQALNGRYFGGKMITAAFVVNDV 449 (457)
T ss_pred HHHHHhcCcccCCeEEEEEEEcHHH
Confidence 9999999999999999999987654
No 22
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=1.1e-19 Score=202.66 Aligned_cols=164 Identities=17% Similarity=0.287 Sum_probs=144.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCC
Q 003036 148 RTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (854)
Q Consensus 148 rtLfVgNLP~~vTEedL~elFsqfG~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk 222 (854)
.||||++||+.++.++|.++|+.+|+|..++ -+..++||+||.|.-.+++++|++.+.+..+.|+.|+|.++.++
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 7999999999999999999999999999887 24468999999999999999999999999999999999998776
Q ss_pred CCCCccc----------------------ccccceeeecCCCCCCHHHHhhhhcccCceeEeeec----CCcccEEEEEe
Q 003036 223 DNPSEKE----------------------INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET----PQKIHQKYIEF 276 (854)
Q Consensus 223 ~~~~~~~----------------------~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit----~~skG~AFVeF 276 (854)
....... ...-.|.|+|||+.+...+|+.+|+.||.|.+|.|. +.-.|||||+|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 4322000 013379999999999999999999999999999983 33459999999
Q ss_pred CCHHHHHHHHHHhCCceeCCeEEEEEeccCchhhh
Q 003036 277 YDTRAAEAALRELNSRYIAGKQIKLEPSHLRGLRK 311 (854)
Q Consensus 277 ~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~~Rr 311 (854)
.+..+|.+|++.+||.+|.|++|-|.||.+++.-.
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye 200 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYE 200 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeeccccccc
Confidence 99999999999999999999999999999987443
No 23
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=1.1e-18 Score=194.80 Aligned_cols=167 Identities=19% Similarity=0.368 Sum_probs=143.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCC
Q 003036 147 SRTLLLRKINSNIEDSELKALFEQYGDVRTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (854)
Q Consensus 147 srtLfVgNLP~~vTEedL~elFsqfG~I~sv~----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk 222 (854)
--.|+|+|||+.+.+.+|+.+|++||.|..|. ..++-.|||||.|....+|.+|++.+|+..|.||+|-|.|+.++
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 56899999999999999999999999999998 34556799999999999999999999999999999999999766
Q ss_pred CCCCc-----------------------------------------c--c------------------------------
Q 003036 223 DNPSE-----------------------------------------K--E------------------------------ 229 (854)
Q Consensus 223 ~~~~~-----------------------------------------~--~------------------------------ 229 (854)
+.... . +
T Consensus 197 d~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~ 276 (678)
T KOG0127|consen 197 DTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKES 276 (678)
T ss_pred ccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcc
Confidence 21000 0 0
Q ss_pred ----c---------cccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHh--
Q 003036 230 ----I---------NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALREL-- 289 (854)
Q Consensus 230 ----~---------~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~L-- 289 (854)
. ...+|||+|||+++++++|.++|++||+|.++.+ +++++|.|||.|.+..+|..||...
T Consensus 277 ~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Asp 356 (678)
T KOG0127|consen 277 DKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASP 356 (678)
T ss_pred cchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCc
Confidence 0 1148999999999999999999999999999665 7889999999999999999999876
Q ss_pred ---CC-ceeCCeEEEEEeccCchhhhHh
Q 003036 290 ---NS-RYIAGKQIKLEPSHLRGLRKCL 313 (854)
Q Consensus 290 ---NG-~~I~Gk~IkV~~a~pk~~Rr~l 313 (854)
.| ..|.|+.|+|..+.++.+-..|
T Consensus 357 a~e~g~~ll~GR~Lkv~~Av~RkeA~dm 384 (678)
T KOG0127|consen 357 ASEDGSVLLDGRLLKVTLAVTRKEAADM 384 (678)
T ss_pred cCCCceEEEeccEEeeeeccchHHHHHH
Confidence 34 6789999999999987755444
No 24
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=1.7e-18 Score=178.87 Aligned_cols=165 Identities=16% Similarity=0.293 Sum_probs=139.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhcceecCCc--eee
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSG--KLD 215 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr--~L~ 215 (854)
+.....+|||.+||+.+|..||+.+|++||.|..-+ .++.+||.+||.|..+.+|+.|++.|||..-.|. +|.
T Consensus 123 ~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepIt 202 (360)
T KOG0145|consen 123 DSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPIT 202 (360)
T ss_pred hhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeE
Confidence 345568999999999999999999999999886544 5789999999999999999999999999887654 788
Q ss_pred eeecCCCCCCC------------------------ccc----------------------------------cccc-cee
Q 003036 216 IHYSIPKDNPS------------------------EKE----------------------------------INQG-TLV 236 (854)
Q Consensus 216 V~~a~pk~~~~------------------------~~~----------------------------------~~~~-tLf 236 (854)
|+|+....... .+- ...+ .||
T Consensus 203 VKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciF 282 (360)
T KOG0145|consen 203 VKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIF 282 (360)
T ss_pred EEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEE
Confidence 88874331100 000 0111 799
Q ss_pred eecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCc
Q 003036 237 VFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 307 (854)
Q Consensus 237 V~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk 307 (854)
|-||.++.+|.-|+++|.+||.|..|++ +.+.|||+||.+.+.++|..||..|||..+++|.|.|.|...+
T Consensus 283 vYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 283 VYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred EEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 9999999999999999999999999877 4678999999999999999999999999999999999997654
No 25
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=2.7e-18 Score=191.93 Aligned_cols=150 Identities=19% Similarity=0.331 Sum_probs=136.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEE---eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCCCC
Q 003036 148 RTLLLRKINSNIEDSELKALFEQYGDVRTFY---RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDN 224 (854)
Q Consensus 148 rtLfVgNLP~~vTEedL~elFsqfG~I~sv~---~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk~~ 224 (854)
..|||+ ++|||..|+++|+.+|+|.+++ ... +-|||||.|.++++|++||+++|...+.|++++|.|+.....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~ 77 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDAT-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS 77 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCC-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc
Confidence 468999 8999999999999999998887 234 999999999999999999999999999999999999864322
Q ss_pred CCcccccccceeeecCCCCCCHHHHhhhhcccCceeEeee---cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 003036 225 PSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE---TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKL 301 (854)
Q Consensus 225 ~~~~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri---t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV 301 (854)
.|||.||+++++..+|.++|+.||+|.+|++ ...++|| ||+|++.++|.+|+..|||..+.|++|.|
T Consensus 78 ---------~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~v 147 (369)
T KOG0123|consen 78 ---------LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYV 147 (369)
T ss_pred ---------eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEE
Confidence 2999999999999999999999999999987 2237889 99999999999999999999999999999
Q ss_pred EeccCchhhh
Q 003036 302 EPSHLRGLRK 311 (854)
Q Consensus 302 ~~a~pk~~Rr 311 (854)
....++.+|.
T Consensus 148 g~~~~~~er~ 157 (369)
T KOG0123|consen 148 GLFERKEERE 157 (369)
T ss_pred eeccchhhhc
Confidence 9998887664
No 26
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=2.3e-18 Score=184.23 Aligned_cols=157 Identities=15% Similarity=0.343 Sum_probs=139.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCC
Q 003036 147 SRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 221 (854)
Q Consensus 147 srtLfVgNLP~~vTEedL~elFsqfG~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~p 221 (854)
-+.|||+.|.+++.|+.|+..|..||+|++|. .++++||||||+|+-+|.|+-|++.|||..+.||.|+|...
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP-- 190 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP-- 190 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC--
Confidence 47899999999999999999999999999998 68999999999999999999999999999999999999742
Q ss_pred CCCCC---------cccccccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHH
Q 003036 222 KDNPS---------EKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALR 287 (854)
Q Consensus 222 k~~~~---------~~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~ 287 (854)
..-.. +....-.+|||..+.++++++||+.+|+.||+|+.|.+ ....|||+||+|.+..+-..|+.
T Consensus 191 sNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAia 270 (544)
T KOG0124|consen 191 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 270 (544)
T ss_pred CCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhh
Confidence 22111 11124458999999999999999999999999999988 34468999999999999999999
Q ss_pred HhCCceeCCeEEEEEecc
Q 003036 288 ELNSRYIAGKQIKLEPSH 305 (854)
Q Consensus 288 ~LNG~~I~Gk~IkV~~a~ 305 (854)
.||-+.++|..|+|..+.
T Consensus 271 sMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 271 SMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hcchhhcccceEeccccc
Confidence 999999999999987654
No 27
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.74 E-value=7.3e-18 Score=193.57 Aligned_cols=160 Identities=22% Similarity=0.362 Sum_probs=139.2
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEeC--------ccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCC
Q 003036 150 LLLRKINSNIEDSELKALFEQYGDVRTFYRA--------SKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 221 (854)
Q Consensus 150 LfVgNLP~~vTEedL~elFsqfG~I~sv~~t--------gksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~p 221 (854)
|||+||+++++.++|..+|.++|.|.++.+. ..+.|||||+|.+.++|++|++.|+|+.|.|+.|.|.++..
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~ 597 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISEN 597 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccC
Confidence 9999999999999999999999999998621 12449999999999999999999999999999999999872
Q ss_pred CCCC-----CcccccccceeeecCCCCCCHHHHhhhhcccCceeEeeecCC-----cccEEEEEeCCHHHHHHHHHHhCC
Q 003036 222 KDNP-----SEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQ-----KIHQKYIEFYDTRAAEAALRELNS 291 (854)
Q Consensus 222 k~~~-----~~~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~-----skG~AFVeF~d~e~A~kAl~~LNG 291 (854)
+... .......+.|.|+|||+..+..+++++|..||.|++|++..+ .+|||||+|-++++|..|+.+|..
T Consensus 598 k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~S 677 (725)
T KOG0110|consen 598 KPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGS 677 (725)
T ss_pred ccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcc
Confidence 2111 111112458999999999999999999999999999998433 478999999999999999999999
Q ss_pred ceeCCeEEEEEeccCchh
Q 003036 292 RYIAGKQIKLEPSHLRGL 309 (854)
Q Consensus 292 ~~I~Gk~IkV~~a~pk~~ 309 (854)
+.+.|++|.++|+.....
T Consensus 678 THlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 678 THLYGRRLVLEWAKSDNT 695 (725)
T ss_pred cceechhhheehhccchH
Confidence 999999999999988663
No 28
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.72 E-value=6.1e-17 Score=165.94 Aligned_cols=163 Identities=24% Similarity=0.384 Sum_probs=144.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHH----HhhccCCeEEEE--eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeee
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKA----LFEQYGDVRTFY--RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~e----lFsqfG~I~sv~--~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V 216 (854)
+..+..||||.||+..+..++|++ +|++||.|.+|. .+.+.+|-|||.|.+.+.|-.|+++|+|..+.|++++|
T Consensus 5 ~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 5 SVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred ccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 345666999999999999999998 999999999998 57899999999999999999999999999999999999
Q ss_pred eecCCCCCCCcc----------------------------------------------cccccceeeecCCCCCCHHHHh
Q 003036 217 HYSIPKDNPSEK----------------------------------------------EINQGTLVVFNLDSSVSNDELH 250 (854)
Q Consensus 217 ~~a~pk~~~~~~----------------------------------------------~~~~~tLfV~NLp~svTeedLr 250 (854)
+|+..+.+...+ ..++.+|++.|||..++.+.|.
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~ 164 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLS 164 (221)
T ss_pred ecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHH
Confidence 999765332111 1234589999999999999999
Q ss_pred hhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEEecc
Q 003036 251 HIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIA-GKQIKLEPSH 305 (854)
Q Consensus 251 eiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~-Gk~IkV~~a~ 305 (854)
.+|.+|...++|++....++.|||+|.+...|..|...|.|..|. ...++|.+++
T Consensus 165 ~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 165 DLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999999999998888999999999999999999999999887 7888888874
No 29
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=5.5e-17 Score=168.28 Aligned_cols=166 Identities=17% Similarity=0.334 Sum_probs=138.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE----eCccccceEEEeeCCHHHHHHHHHHhccee-cCC--ceeeeee
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKL-TRS--GKLDIHY 218 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~----~tgksKGfAFVeF~d~edA~kAl~~Lng~~-L~G--r~L~V~~ 218 (854)
..|+|||+-|.+.-.|+|++.+|..||.|.+|. ..+.+||||||.|.+..+|..||..|+|.. +.| ..|.|+|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 468999999999999999999999999999988 467899999999999999999999999954 333 2344444
Q ss_pred cCCCCCCC------------------------------------------------------------------------
Q 003036 219 SIPKDNPS------------------------------------------------------------------------ 226 (854)
Q Consensus 219 a~pk~~~~------------------------------------------------------------------------ 226 (854)
+...+++.
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 42110000
Q ss_pred --------------------------------------------------------------------------------
Q 003036 227 -------------------------------------------------------------------------------- 226 (854)
Q Consensus 227 -------------------------------------------------------------------------------- 226 (854)
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence
Q ss_pred ----------------------cccccccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCH
Q 003036 227 ----------------------EKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDT 279 (854)
Q Consensus 227 ----------------------~~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~ 279 (854)
......++|||..||....+.||.+.|-.||.|++.++ +..+|.|+||.|+++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 00003358999999999999999999999999998654 778999999999999
Q ss_pred HHHHHHHHHhCCceeCCeEEEEEeccCchhhh
Q 003036 280 RAAEAALRELNSRYIAGKQIKLEPSHLRGLRK 311 (854)
Q Consensus 280 e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~~Rr 311 (854)
.+|+.||.+|||+.|+-|+|+|.+.+||++.|
T Consensus 338 ~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 369 (371)
T ss_pred hhHHHHHHHhcchhhhhhhhhhhhcCccccCC
Confidence 99999999999999999999999999988543
No 30
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=2.9e-16 Score=175.71 Aligned_cols=163 Identities=17% Similarity=0.340 Sum_probs=144.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe---CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCCCC
Q 003036 148 RTLLLRKINSNIEDSELKALFEQYGDVRTFYR---ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDN 224 (854)
Q Consensus 148 rtLfVgNLP~~vTEedL~elFsqfG~I~sv~~---tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk~~ 224 (854)
..|||+||+++++..+|.++|+.||+|.+|+. ..-++|| ||+|.++++|++|++.+||..+.+++|.|.....+..
T Consensus 77 ~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 77 SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 34999999999999999999999999999992 2338999 9999999999999999999999999999988776655
Q ss_pred CCccc----ccccceeeecCCCCCCHHHHhhhhcccCceeEeee----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 003036 225 PSEKE----INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAG 296 (854)
Q Consensus 225 ~~~~~----~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~G 296 (854)
+.... ..-..++|.|++.++++++|...|..||.|..+.+ .+.+++|+||+|.++++|..|++.|++..+.+
T Consensus 156 r~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~ 235 (369)
T KOG0123|consen 156 REAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGD 235 (369)
T ss_pred hcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCc
Confidence 43222 23348999999999999999999999999999776 45578999999999999999999999999999
Q ss_pred eEEEEEeccCchhhh
Q 003036 297 KQIKLEPSHLRGLRK 311 (854)
Q Consensus 297 k~IkV~~a~pk~~Rr 311 (854)
+.+.|..+..+.++.
T Consensus 236 ~~~~V~~aqkk~e~~ 250 (369)
T KOG0123|consen 236 KELYVGRAQKKSERE 250 (369)
T ss_pred cceeecccccchhhH
Confidence 999999998866665
No 31
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=2.8e-16 Score=171.98 Aligned_cols=163 Identities=16% Similarity=0.346 Sum_probs=140.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE----eCccccceEEEeeCCHHHHHHHHHHhccee-cCCc--eeeeee
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKL-TRSG--KLDIHY 218 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~----~tgksKGfAFVeF~d~edA~kAl~~Lng~~-L~Gr--~L~V~~ 218 (854)
..++|||+-|++.++|.|++++|.+||.|++|+ ..+.+||||||.|.+++.|..||++||+.. +.|+ +|.|+|
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkF 202 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKF 202 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEe
Confidence 368999999999999999999999999999998 467899999999999999999999999964 6654 788988
Q ss_pred cCCCCCCCcccc--------------------------------------------------------------------
Q 003036 219 SIPKDNPSEKEI-------------------------------------------------------------------- 230 (854)
Q Consensus 219 a~pk~~~~~~~~-------------------------------------------------------------------- 230 (854)
+.+++++..+..
T Consensus 203 ADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~~ 282 (510)
T KOG0144|consen 203 ADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALAA 282 (510)
T ss_pred cccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhhh
Confidence 876633110000
Q ss_pred --------------------------------------------------------------------------------
Q 003036 231 -------------------------------------------------------------------------------- 230 (854)
Q Consensus 231 -------------------------------------------------------------------------------- 230 (854)
T Consensus 283 ~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~aa 362 (510)
T KOG0144|consen 283 AATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVAA 362 (510)
T ss_pred hcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCcccc
Confidence
Q ss_pred ------------------------------------------------------------cccceeeecCCCCCCHHHHh
Q 003036 231 ------------------------------------------------------------NQGTLVVFNLDSSVSNDELH 250 (854)
Q Consensus 231 ------------------------------------------------------------~~~tLfV~NLp~svTeedLr 250 (854)
....|||.+||.+.-+.+|.
T Consensus 363 ~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l~ 442 (510)
T KOG0144|consen 363 SLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDLI 442 (510)
T ss_pred cccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHHH
Confidence 12379999999999999999
Q ss_pred hhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCch
Q 003036 251 HIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 251 eiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~ 308 (854)
..|..||.|++.++ ++.++.|+||.|++..+|..||..|||+.|+.|+++|...+.+.
T Consensus 443 ~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~ 505 (510)
T KOG0144|consen 443 ATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRN 505 (510)
T ss_pred HHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccC
Confidence 99999999998554 67789999999999999999999999999999999999987654
No 32
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=4.2e-16 Score=162.46 Aligned_cols=135 Identities=21% Similarity=0.386 Sum_probs=112.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCCCC
Q 003036 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDN 224 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk~~ 224 (854)
...|||||+||+.+|||+-|..||.+.|.|..+++ .|+ .|+|.|+.....
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~----------i~~--------------------e~~v~wa~~p~n 53 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKV----------IFD--------------------ELKVNWATAPGN 53 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhcccccccee----------ehh--------------------hhccccccCccc
Confidence 34599999999999999999999999999998874 111 445555544433
Q ss_pred CCcccccc-cceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 003036 225 PSEKEINQ-GTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQ 298 (854)
Q Consensus 225 ~~~~~~~~-~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~ 298 (854)
.......+ -.+||+.|...++.++|++.|.+||+|.++++ +.++|||+||.|.+.++|+.||..|||..|++|.
T Consensus 54 Qsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~ 133 (321)
T KOG0148|consen 54 QSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRT 133 (321)
T ss_pred CCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccce
Confidence 33322232 27999999999999999999999999988666 7889999999999999999999999999999999
Q ss_pred EEEEeccCchh
Q 003036 299 IKLEPSHLRGL 309 (854)
Q Consensus 299 IkV~~a~pk~~ 309 (854)
|+..|+.+|..
T Consensus 134 IRTNWATRKp~ 144 (321)
T KOG0148|consen 134 IRTNWATRKPS 144 (321)
T ss_pred eeccccccCcc
Confidence 99999988763
No 33
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.64 E-value=4e-15 Score=174.43 Aligned_cols=77 Identities=14% Similarity=0.344 Sum_probs=70.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeec
Q 003036 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a 219 (854)
...++|||+|||+++++++|+++|++||+|..++ .++++||||||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 3457999999999999999999999999999987 25679999999999999999999999999999999999776
Q ss_pred CC
Q 003036 220 IP 221 (854)
Q Consensus 220 ~p 221 (854)
.+
T Consensus 282 i~ 283 (612)
T TIGR01645 282 VT 283 (612)
T ss_pred CC
Confidence 53
No 34
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.64 E-value=2.8e-13 Score=148.53 Aligned_cols=159 Identities=18% Similarity=0.285 Sum_probs=132.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhh-ccCCeEEEE----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecC
Q 003036 146 PSRTLLLRKINSNIEDSELKALFE-QYGDVRTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFs-qfG~I~sv~----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~ 220 (854)
..|.+||.|||+++..++|++||. +.|+|..|. ..+|.||||.|+|+++|.+++|++.||...+.||+|.|+-..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 347799999999999999999998 689999887 579999999999999999999999999999999999884321
Q ss_pred CC----------------------------------------------CC-CCcc-------------------------
Q 003036 221 PK----------------------------------------------DN-PSEK------------------------- 228 (854)
Q Consensus 221 pk----------------------------------------------~~-~~~~------------------------- 228 (854)
.. ++ ....
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 10 00 0000
Q ss_pred ---------cccccceeeecCCCCCCHHHHhhhhcccCceeEeee----cCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 003036 229 ---------EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIA 295 (854)
Q Consensus 229 ---------~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~ 295 (854)
.+...++||.||...+..+.|++.|.-.|.|+.|.+ .+.++|++.++|..+-+|..||..|++.-+.
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~ 282 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLF 282 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCc
Confidence 002347899999999999999999999999988665 4667899999999999999999999987777
Q ss_pred CeEEEEEec
Q 003036 296 GKQIKLEPS 304 (854)
Q Consensus 296 Gk~IkV~~a 304 (854)
.++..+.+.
T Consensus 283 ~~~~~~Rl~ 291 (608)
T KOG4212|consen 283 DRRMTVRLD 291 (608)
T ss_pred cccceeecc
Confidence 777777664
No 35
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=2.2e-15 Score=149.62 Aligned_cols=149 Identities=18% Similarity=0.253 Sum_probs=126.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCcc--ccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCC
Q 003036 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASK--HCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgk--sKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk 222 (854)
..+++|||+|||.++-+.||+++|.+||.|+.|..+.. .-.||||+|++..+|+.||..-+|..+.|..|+|+|+.--
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 45789999999999999999999999999999985333 4579999999999999999999999999999999998644
Q ss_pred CCCC----------------------cccccccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHH
Q 003036 223 DNPS----------------------EKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTR 280 (854)
Q Consensus 223 ~~~~----------------------~~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e 280 (854)
.... ......-.+.|.+||++-+++||++++.+-|+|....+. ..+++.|+|...|
T Consensus 84 r~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~--rDg~GvV~~~r~e 161 (241)
T KOG0105|consen 84 RSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQ--RDGVGVVEYLRKE 161 (241)
T ss_pred CcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeee--cccceeeeeeehh
Confidence 2111 111133489999999999999999999999999887664 3469999999999
Q ss_pred HHHHHHHHhCCceeC
Q 003036 281 AAEAALRELNSRYIA 295 (854)
Q Consensus 281 ~A~kAl~~LNG~~I~ 295 (854)
+-+-|++.|+...+.
T Consensus 162 DMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 162 DMKYAVRKLDDQKFR 176 (241)
T ss_pred hHHHHHHhhcccccc
Confidence 999999999877654
No 36
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.61 E-value=3.6e-16 Score=175.89 Aligned_cols=164 Identities=22% Similarity=0.306 Sum_probs=141.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeee
Q 003036 142 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (854)
Q Consensus 142 ~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V 216 (854)
.+++..||+|+--|+..++..+|+++|+.+|+|+.|. .++.+||.|||+|.|.+....|+ .|.|+.+.|.+|.|
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~v 252 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIV 252 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEe
Confidence 3566789999999999999999999999999999987 46779999999999999999999 89999999999999
Q ss_pred eecCCCCCCCcc----------cccccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHH
Q 003036 217 HYSIPKDNPSEK----------EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRA 281 (854)
Q Consensus 217 ~~a~pk~~~~~~----------~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~ 281 (854)
+......+.... ..+-..|||+||...+++++|+.+|++||.|..|.+ ++..+||+||+|.+.++
T Consensus 253 q~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 253 QLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKED 332 (549)
T ss_pred cccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHH
Confidence 775433221100 011123999999999999999999999999988765 67789999999999999
Q ss_pred HHHHHHHhCCceeCCeEEEEEeccC
Q 003036 282 AEAALRELNSRYIAGKQIKLEPSHL 306 (854)
Q Consensus 282 A~kAl~~LNG~~I~Gk~IkV~~a~p 306 (854)
|.+|+..|||.+|.|+.|+|.....
T Consensus 333 ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 333 ARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred HHHHHHHhccceecCceEEEEEeee
Confidence 9999999999999999999987643
No 37
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.59 E-value=2.2e-15 Score=164.12 Aligned_cols=163 Identities=10% Similarity=0.259 Sum_probs=141.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecC
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~ 220 (854)
..++|||++|+++++++.|++.|.+||+|.+|+ .+++++||+||+|.+.+...+++. .....|.|+.|.+.-+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 568999999999999999999999999999988 468899999999999999998884 34567999999999998
Q ss_pred CCCCCCcccc--cccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 003036 221 PKDNPSEKEI--NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRY 293 (854)
Q Consensus 221 pk~~~~~~~~--~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~ 293 (854)
++.+..+... ...+|||+.||.+++++++++.|.+||.|..+.+ +...++|+||.|.+.+++.+++. ..-..
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~ 162 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHD 162 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceee
Confidence 8876654333 3558999999999999999999999998877544 45678999999999999999875 57788
Q ss_pred eCCeEEEEEeccCchhh
Q 003036 294 IAGKQIKLEPSHLRGLR 310 (854)
Q Consensus 294 I~Gk~IkV~~a~pk~~R 310 (854)
|.|+.+.|..|.|++..
T Consensus 163 ~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKEVM 179 (311)
T ss_pred ecCceeeEeeccchhhc
Confidence 99999999999997743
No 38
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.49 E-value=1.2e-13 Score=155.88 Aligned_cols=163 Identities=20% Similarity=0.330 Sum_probs=130.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecC
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~ 220 (854)
|-+.|||+||-+++++++|+.+|+.||+|..|. .++.+|||+||+|.+.++|++|+..|||..|-|+.|+|....
T Consensus 277 p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 277 PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred chhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 444499999999999999999999999999887 379999999999999999999999999999999999985442
Q ss_pred CCCCCCcc--------------------------------------------------------------------c---
Q 003036 221 PKDNPSEK--------------------------------------------------------------------E--- 229 (854)
Q Consensus 221 pk~~~~~~--------------------------------------------------------------------~--- 229 (854)
.+-+..+. .
T Consensus 357 ~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~ 436 (549)
T KOG0147|consen 357 ERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADAS 436 (549)
T ss_pred eecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccc
Confidence 22110000 0
Q ss_pred ----ccccceeeecCCCC--CC--------HHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 003036 230 ----INQGTLVVFNLDSS--VS--------NDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIA 295 (854)
Q Consensus 230 ----~~~~tLfV~NLp~s--vT--------eedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~ 295 (854)
..+.++.+.|+=.. .| .||+.+.+.+||.|..|.+...+-|+.||.|.+.++|..|+++|||..|.
T Consensus 437 p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF~ 516 (549)
T KOG0147|consen 437 PAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRWFA 516 (549)
T ss_pred cccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhhhc
Confidence 01112333333111 11 26788889999999999998888899999999999999999999999999
Q ss_pred CeEEEEEeccCch
Q 003036 296 GKQIKLEPSHLRG 308 (854)
Q Consensus 296 Gk~IkV~~a~pk~ 308 (854)
||.|++.|-....
T Consensus 517 gr~Ita~~~~~~~ 529 (549)
T KOG0147|consen 517 GRMITAKYLPLER 529 (549)
T ss_pred cceeEEEEeehhh
Confidence 9999999976543
No 39
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=6.9e-14 Score=144.63 Aligned_cols=153 Identities=21% Similarity=0.337 Sum_probs=130.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCCCCC--
Q 003036 148 RTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDNP-- 225 (854)
Q Consensus 148 rtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk~~~-- 225 (854)
..+||++||+.+.+.+|.++|..||.|..+.+ ..||+||+|.|..+|.-|+..|+++.|.|..+.|.|+..+...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m---k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g 78 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM---KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRG 78 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee---ecccceeccCchhhhhcccchhcCceecceeeeeecccccccccC
Confidence 46899999999999999999999999999875 4578999999999999999999999999988999988743110
Q ss_pred ----C----------cccccccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCC
Q 003036 226 ----S----------EKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNS 291 (854)
Q Consensus 226 ----~----------~~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG 291 (854)
. ........|+|.++...+.+.+|.++|..+|.+..... ..+++||+|.+.++|.+|+..|++
T Consensus 79 ~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~---~~~~~~v~Fs~~~da~ra~~~l~~ 155 (216)
T KOG0106|consen 79 RPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA---RRNFAFVEFSEQEDAKRALEKLDG 155 (216)
T ss_pred CCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh---hccccceeehhhhhhhhcchhccc
Confidence 0 00113347889999999999999999999999966554 678999999999999999999999
Q ss_pred ceeCCeEEEEEeccC
Q 003036 292 RYIAGKQIKLEPSHL 306 (854)
Q Consensus 292 ~~I~Gk~IkV~~a~p 306 (854)
..+.++.|.+...-.
T Consensus 156 ~~~~~~~l~~~~~~~ 170 (216)
T KOG0106|consen 156 KKLNGRRISVEKNSR 170 (216)
T ss_pred hhhcCceeeecccCc
Confidence 999999999954433
No 40
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.43 E-value=6.3e-13 Score=130.79 Aligned_cols=80 Identities=19% Similarity=0.308 Sum_probs=73.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeec
Q 003036 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a 219 (854)
..+++|||+|||+++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 45789999999999999999999999999999872 5788999999999999999999999999999999999998
Q ss_pred CCCCC
Q 003036 220 IPKDN 224 (854)
Q Consensus 220 ~pk~~ 224 (854)
.++..
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 76543
No 41
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.43 E-value=7e-13 Score=135.36 Aligned_cols=150 Identities=17% Similarity=0.273 Sum_probs=117.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEE--EeCcc----ccceEEEeeCCHHHHHHHHHHhcceecC---Cceeee
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTF--YRASK----HCGFVTISYYDIRAARNAMKSLQNKLTR---SGKLDI 216 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsqfG~I~sv--~~tgk----sKGfAFVeF~d~edA~kAl~~Lng~~L~---Gr~L~V 216 (854)
.-|||||.+||.++...||+.+|..|--.+.. +.+.+ .+-+|||.|.+.++|..|+.+|||..++ +..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 36999999999999999999999988644433 33333 3479999999999999999999999885 678888
Q ss_pred eecCCCCCCCc----------------------c-----------------------------c----------------
Q 003036 217 HYSIPKDNPSE----------------------K-----------------------------E---------------- 229 (854)
Q Consensus 217 ~~a~pk~~~~~----------------------~-----------------------------~---------------- 229 (854)
++++......+ . +
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 77642210000 0 0
Q ss_pred ---------------ccccceeeecCCCCCCHHHHhhhhcccCceeEeeec-CCcccEEEEEeCCHHHHHHHHHHhCCce
Q 003036 230 ---------------INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET-PQKIHQKYIEFYDTRAAEAALRELNSRY 293 (854)
Q Consensus 230 ---------------~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit-~~skG~AFVeF~d~e~A~kAl~~LNG~~ 293 (854)
....+|||.||.+.++|++|+++|+.|-....+++. ......|||+|++.+.|..|+..|.|..
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~ 272 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNL 272 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcce
Confidence 022389999999999999999999999776666652 2334589999999999999999999987
Q ss_pred eC
Q 003036 294 IA 295 (854)
Q Consensus 294 I~ 295 (854)
|.
T Consensus 273 ~s 274 (284)
T KOG1457|consen 273 LS 274 (284)
T ss_pred ec
Confidence 63
No 42
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=1.4e-12 Score=150.76 Aligned_cols=162 Identities=22% Similarity=0.386 Sum_probs=133.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecC--
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI-- 220 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~-- 220 (854)
.++..+.|+|+|||..+..++|..+|..||+|..+... ..---++|.|.+..+|++|++.|....+...++++.|+.
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp-~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~d 459 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP-PGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPED 459 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecC-cccceeeeeecCccchHHHHHHhchhhhccCccccccChhh
Confidence 45567899999999999999999999999999998653 222349999999999999999999998888888776652
Q ss_pred -----CCCC-------------CC------------ccc-------------ccc-cceeeecCCCCCCHHHHhhhhccc
Q 003036 221 -----PKDN-------------PS------------EKE-------------INQ-GTLVVFNLDSSVSNDELHHIFGVY 256 (854)
Q Consensus 221 -----pk~~-------------~~------------~~~-------------~~~-~tLfV~NLp~svTeedLreiFs~f 256 (854)
|+.. .. ..+ ... .+|||.||+++.+.++|..+|..+
T Consensus 460 vf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~ 539 (725)
T KOG0110|consen 460 VFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQ 539 (725)
T ss_pred hccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhc
Confidence 1100 00 000 012 249999999999999999999999
Q ss_pred CceeEeeecCC--------cccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 003036 257 GEIKEIRETPQ--------KIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (854)
Q Consensus 257 G~I~~Vrit~~--------skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~ 305 (854)
|.|.++.|..+ +.|||||+|.+.++|+.|++.|+|+.|+|+.|.|.++.
T Consensus 540 G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 540 GTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred CeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 99999877222 23999999999999999999999999999999999987
No 43
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.40 E-value=1e-12 Score=129.31 Aligned_cols=78 Identities=22% Similarity=0.418 Sum_probs=71.7
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~ 305 (854)
...+|||+|||..+++++|+++|++||.|++|++ ++++++||||+|.+.++|++|++.||+..|.|++|+|++++
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 4468999999999999999999999999999877 45678999999999999999999999999999999999987
Q ss_pred Cch
Q 003036 306 LRG 308 (854)
Q Consensus 306 pk~ 308 (854)
++.
T Consensus 113 ~~~ 115 (144)
T PLN03134 113 DRP 115 (144)
T ss_pred cCC
Confidence 643
No 44
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.36 E-value=1.5e-11 Score=132.44 Aligned_cols=161 Identities=14% Similarity=0.229 Sum_probs=130.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEE----------E--eCccccceEEEeeCCHHHHHHHHHHhcceecCCc
Q 003036 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTF----------Y--RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSG 212 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv----------~--~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr 212 (854)
.-...|||.|||.++|.+++.++|++||-|..- + ..++.||=|++.|-..+++.-|++.|++..++|+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 345679999999999999999999999977542 2 4678899999999999999999999999999999
Q ss_pred eeeeeecCCCCC----------------------------------CCcccccccceeeecCCC----CCC-------HH
Q 003036 213 KLDIHYSIPKDN----------------------------------PSEKEINQGTLVVFNLDS----SVS-------ND 247 (854)
Q Consensus 213 ~L~V~~a~pk~~----------------------------------~~~~~~~~~tLfV~NLp~----svT-------ee 247 (854)
.|+|+.|.-... ...+....++|.+.|+=. ..+ .+
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlke 291 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKE 291 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHH
Confidence 999977631100 011112445888888742 122 36
Q ss_pred HHhhhhcccCceeEeee-cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 003036 248 ELHHIFGVYGEIKEIRE-TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (854)
Q Consensus 248 dLreiFs~fG~I~~Vri-t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~ 305 (854)
+|++-+++||.|..|.+ ..++.|.+-|.|.+.++|..||+.|+|+.++||+|..+...
T Consensus 292 dl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 292 DLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWD 350 (382)
T ss_pred HHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeC
Confidence 77788999999999877 56788999999999999999999999999999999887643
No 45
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.36 E-value=7.4e-12 Score=136.93 Aligned_cols=160 Identities=22% Similarity=0.259 Sum_probs=136.6
Q ss_pred CcEEEEcCCCCC-CCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCCCCC
Q 003036 147 SRTLLLRKINSN-IEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDNP 225 (854)
Q Consensus 147 srtLfVgNLP~~-vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk~~~ 225 (854)
+..|.|.||..+ ||.+.|..+|..||+|.+|++-.+.+--|+|+|.|...|+-|++.|+|..+.|++|+|.+++...-.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 578999999755 9999999999999999999976677789999999999999999999999999999999988543211
Q ss_pred ------Ccc-------------------------cccccceeeecCCCCCCHHHHhhhhcccCce-eEeeecCCcccEEE
Q 003036 226 ------SEK-------------------------EINQGTLVVFNLDSSVSNDELHHIFGVYGEI-KEIRETPQKIHQKY 273 (854)
Q Consensus 226 ------~~~-------------------------~~~~~tLfV~NLp~svTeedLreiFs~fG~I-~~Vrit~~skG~AF 273 (854)
.+. -.++.+|.+.|+|.++++|+|+..|..-|-. +-.+..++.+.+++
T Consensus 377 lp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal 456 (492)
T KOG1190|consen 377 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMAL 456 (492)
T ss_pred CCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceee
Confidence 000 0134589999999999999999999988765 55666777788999
Q ss_pred EEeCCHHHHHHHHHHhCCceeCC-eEEEEEeccC
Q 003036 274 IEFYDTRAAEAALRELNSRYIAG-KQIKLEPSHL 306 (854)
Q Consensus 274 VeF~d~e~A~kAl~~LNG~~I~G-k~IkV~~a~p 306 (854)
+++.++|+|..|+-.++...+++ ..|+|+|++.
T Consensus 457 ~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 457 PQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred cccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 99999999999999999999886 4999999875
No 46
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.30 E-value=3e-11 Score=132.29 Aligned_cols=163 Identities=25% Similarity=0.387 Sum_probs=135.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccce-EEEeeCCHHHHHHHHHHhcceecC--CceeeeeecCCC
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGF-VTISYYDIRAARNAMKSLQNKLTR--SGKLDIHYSIPK 222 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGf-AFVeF~d~edA~kAl~~Lng~~L~--Gr~L~V~~a~pk 222 (854)
+--.++|.|+-.-|+-|-|..+|++||.|..|.+-.|..+| |+|+|.|.+.|+.|..+|+|+-|. .+.|+|.|+.-.
T Consensus 149 ~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt 228 (492)
T KOG1190|consen 149 PVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLT 228 (492)
T ss_pred eeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcc
Confidence 44578899999999999999999999999999976777777 999999999999999999998874 457777766311
Q ss_pred C----------C-------CCc--------------------------------------c--ccc--ccceeeecCCC-
Q 003036 223 D----------N-------PSE--------------------------------------K--EIN--QGTLVVFNLDS- 242 (854)
Q Consensus 223 ~----------~-------~~~--------------------------------------~--~~~--~~tLfV~NLp~- 242 (854)
. . +.. . ... ...|.|.||..
T Consensus 229 ~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~ 308 (492)
T KOG1190|consen 229 DLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEE 308 (492)
T ss_pred cceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchh
Confidence 0 0 000 0 001 24677888765
Q ss_pred CCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCch
Q 003036 243 SVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 243 svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~ 308 (854)
.+|.+.|..+|+.||+|.+|++...++..|+|+|.|...|+-|+..|+|..+.||+|+|.+++...
T Consensus 309 ~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 309 AVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred ccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 699999999999999999999977777999999999999999999999999999999999998654
No 47
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.28 E-value=9.1e-12 Score=104.96 Aligned_cols=66 Identities=20% Similarity=0.446 Sum_probs=61.7
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CccccceEEEeeCCHHHHHHHHHHhcceecCCceee
Q 003036 150 LLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 215 (854)
Q Consensus 150 LfVgNLP~~vTEedL~elFsqfG~I~sv~~----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~ 215 (854)
|||+|||+++++++|+++|++||.|..+.. .++.+++|||+|.+.++|++|++.|+|..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999988872 467899999999999999999999999999999875
No 48
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.28 E-value=1.3e-11 Score=104.06 Aligned_cols=66 Identities=35% Similarity=0.580 Sum_probs=61.5
Q ss_pred eeeecCCCCCCHHHHhhhhcccCceeEeee----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003036 235 LVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIK 300 (854)
Q Consensus 235 LfV~NLp~svTeedLreiFs~fG~I~~Vri----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~Ik 300 (854)
|||+|||..+++++|+++|++||.|..+.+ .+..+++|||+|.+.++|++|++.|+|..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999988777 245689999999999999999999999999999986
No 49
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.26 E-value=1.5e-11 Score=144.35 Aligned_cols=112 Identities=16% Similarity=0.242 Sum_probs=97.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcc--CCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCCC
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQY--GDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKD 223 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsqf--G~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk~ 223 (854)
..++|||+||+.++++++|+++|++| |+|..|+. .++||||+|.+.++|++|++.||+..|.|+.|+|.|+.|+.
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~---~rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~ 308 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKK---IRDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVD 308 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEe---ecCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCC
Confidence 46899999999999999999999999 99999874 46899999999999999999999999999999999998864
Q ss_pred CCCc------------------------ccccccceeeecCCCCCCHHHHhhhhcccCcee
Q 003036 224 NPSE------------------------KEINQGTLVVFNLDSSVSNDELHHIFGVYGEIK 260 (854)
Q Consensus 224 ~~~~------------------------~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~ 260 (854)
.... ......++++.|+++..+++.+.++|..+|.|.
T Consensus 309 ~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~~~ 369 (578)
T TIGR01648 309 KKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGPIR 369 (578)
T ss_pred cccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhccccCcccc
Confidence 4300 001356899999999999999999999998754
No 50
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.25 E-value=3.8e-11 Score=123.41 Aligned_cols=118 Identities=22% Similarity=0.378 Sum_probs=101.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecC-
Q 003036 147 SRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI- 220 (854)
Q Consensus 147 srtLfVgNLP~~vTEedL~elFsqfG~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~- 220 (854)
.++|||+|||.++++++|+++|.+||.|..+. .+++.+|||||+|.+.++|..|++.+++..|.|++|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999997776 367899999999999999999999999999999999999954
Q ss_pred ---CCCCCCc----------------ccccccceeeecCCCCCCHHHHhhhhcccCceeEeee
Q 003036 221 ---PKDNPSE----------------KEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE 264 (854)
Q Consensus 221 ---pk~~~~~----------------~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri 264 (854)
++..... .......+++.+++..++..++...|..+|.+..+.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASL 257 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeec
Confidence 2222210 0113448999999999999999999999999977666
No 51
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=1.4e-11 Score=122.14 Aligned_cols=77 Identities=22% Similarity=0.410 Sum_probs=73.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCCC
Q 003036 147 SRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKD 223 (854)
Q Consensus 147 srtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk~ 223 (854)
.++|||+||+..+++.||+.+|..||+|..|.+.....|||||+|+++.+|+.|+..|+|+.|.|..|+|+++.-..
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 58999999999999999999999999999999888999999999999999999999999999999999999986543
No 52
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.21 E-value=9.3e-11 Score=131.36 Aligned_cols=162 Identities=14% Similarity=0.222 Sum_probs=126.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE---eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCCC
Q 003036 147 SRTLLLRKINSNIEDSELKALFEQYGDVRTFY---RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKD 223 (854)
Q Consensus 147 srtLfVgNLP~~vTEedL~elFsqfG~I~sv~---~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk~ 223 (854)
..-|-+++|||++|++||.++|+.++ |+.+. .+++..|-|||+|.+++++++|++ .+...+..|-|.|--+.+++
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~e 87 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGAE 87 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCcc
Confidence 45788899999999999999999987 33333 568999999999999999999995 57777888888875554443
Q ss_pred CCCc-------ccccccceeeecCCCCCCHHHHhhhhcccCceeE-eee----cCCcccEEEEEeCCHHHHHHHHHHhCC
Q 003036 224 NPSE-------KEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKE-IRE----TPQKIHQKYIEFYDTRAAEAALRELNS 291 (854)
Q Consensus 224 ~~~~-------~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~-Vri----t~~skG~AFVeF~d~e~A~kAl~~LNG 291 (854)
.... ...+...|.+++||+.|+++||.++|+..-.|.. |.+ ..++.+-|||+|++.+.|++|+.. |.
T Consensus 88 ~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hr 166 (510)
T KOG4211|consen 88 ADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HR 166 (510)
T ss_pred ccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HH
Confidence 2111 1124458999999999999999999997655444 322 344668999999999999999974 66
Q ss_pred ceeCCeEEEEEeccCchhhh
Q 003036 292 RYIAGKQIKLEPSHLRGLRK 311 (854)
Q Consensus 292 ~~I~Gk~IkV~~a~pk~~Rr 311 (854)
..|.-+-|.|-.+...+.++
T Consensus 167 e~iGhRYIEvF~Ss~~e~~~ 186 (510)
T KOG4211|consen 167 ENIGHRYIEVFRSSRAEVKR 186 (510)
T ss_pred HhhccceEEeehhHHHHHHh
Confidence 77888999998887666555
No 53
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=1.9e-11 Score=121.30 Aligned_cols=77 Identities=31% Similarity=0.447 Sum_probs=72.6
Q ss_pred ccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCch
Q 003036 232 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 232 ~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~ 308 (854)
..+|||+||+..+++.||..+|..||.|..|.+...+.|||||||+++.+|+.|+..|+|+.|.|..|+|+++.-..
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 46899999999999999999999999999999977889999999999999999999999999999999999987543
No 54
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.19 E-value=3.7e-11 Score=134.02 Aligned_cols=77 Identities=21% Similarity=0.325 Sum_probs=71.2
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~ 305 (854)
..++|||+|||+++++++|+++|+.||.|++|++ ++.+++||||+|.+.++|++|++.|||..|.+++|+|.|++
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~ 185 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYAR 185 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccc
Confidence 4569999999999999999999999999999877 45578999999999999999999999999999999999987
Q ss_pred Cc
Q 003036 306 LR 307 (854)
Q Consensus 306 pk 307 (854)
+.
T Consensus 186 p~ 187 (346)
T TIGR01659 186 PG 187 (346)
T ss_pred cc
Confidence 64
No 55
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=7.7e-11 Score=134.77 Aligned_cols=163 Identities=16% Similarity=0.314 Sum_probs=128.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecC
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~ 220 (854)
...++||++||..+++++++++.+.||+++... .++.++||||.+|.+......|+..|||+.+.+++|.|+.+.
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 357899999999999999999999999987765 457899999999999999999999999999999999998886
Q ss_pred CCCCCCccc--------------------ccccceeeecCCC--CC-CH-------HHHhhhhcccCceeEeeecCC---
Q 003036 221 PKDNPSEKE--------------------INQGTLVVFNLDS--SV-SN-------DELHHIFGVYGEIKEIRETPQ--- 267 (854)
Q Consensus 221 pk~~~~~~~--------------------~~~~tLfV~NLp~--sv-Te-------edLreiFs~fG~I~~Vrit~~--- 267 (854)
+........ .....|.+.|+=. .+ .+ |+++..+.+||.|..|.+...
T Consensus 368 ~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~ 447 (500)
T KOG0120|consen 368 VGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPD 447 (500)
T ss_pred ccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCC
Confidence 543221110 1222344444311 11 11 455667889999999987222
Q ss_pred -----cccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCch
Q 003036 268 -----KIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 268 -----skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~ 308 (854)
..|..||+|.+.+++++|.++|+|..+.++.|...|.....
T Consensus 448 ~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDk 493 (500)
T KOG0120|consen 448 ENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDK 493 (500)
T ss_pred CCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHH
Confidence 35789999999999999999999999999999999986543
No 56
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.16 E-value=6.2e-11 Score=134.49 Aligned_cols=170 Identities=22% Similarity=0.330 Sum_probs=137.2
Q ss_pred CCCC-CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeee
Q 003036 139 EHLN-DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (854)
Q Consensus 139 e~p~-~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~ 217 (854)
+.|. .+.+.++|+|-|||..|++++|+++|+.||+|+.|+.+...+|.+||+|+|.++|++|+++|++..+.|+.|+..
T Consensus 66 ~np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~ 145 (549)
T KOG4660|consen 66 DNPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRP 145 (549)
T ss_pred CCCCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCC
Confidence 4443 367899999999999999999999999999999999889999999999999999999999999999999988732
Q ss_pred ecCCCCC------------------CCcccccccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCH
Q 003036 218 YSIPKDN------------------PSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDT 279 (854)
Q Consensus 218 ~a~pk~~------------------~~~~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~ 279 (854)
....... .....-+...+++- |++..+..-++.++..+|.++. +.++..+..-|++|.+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~~~~~~hq~~~~~~~~ 223 (549)
T KOG4660|consen 146 GGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RETPLLNHQRFVEFADN 223 (549)
T ss_pred CcccccchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-ccccchhhhhhhhhccc
Confidence 2211100 00000123345544 9999998888889999999988 87777777999999999
Q ss_pred HHHHHHHHHhCCceeCCeEEEEEeccCchhhh
Q 003036 280 RAAEAALRELNSRYIAGKQIKLEPSHLRGLRK 311 (854)
Q Consensus 280 e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~~Rr 311 (854)
.++..+...+ |+.+.++...+.++.+.+..+
T Consensus 224 ~s~a~~~~~~-G~~~s~~~~v~t~S~~~g~~n 254 (549)
T KOG4660|consen 224 RSYAFSEPRG-GFLISNSSGVITFSGPGGVWN 254 (549)
T ss_pred cchhhcccCC-ceecCCCCceEEecCCCcccC
Confidence 9997777755 888889999999998877544
No 57
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=3.4e-10 Score=122.30 Aligned_cols=161 Identities=16% Similarity=0.345 Sum_probs=126.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeec
Q 003036 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a 219 (854)
+.-..|||..+-++.+|+||+.+|+.||+|..|. ..+.+|||+||+|.+..+-..|+..||-..+.|.-|+|..+
T Consensus 208 k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 208 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 3457899999999999999999999999999998 46789999999999999999999999999999988887322
Q ss_pred CCCCC---------------------------------------------------------------------------
Q 003036 220 IPKDN--------------------------------------------------------------------------- 224 (854)
Q Consensus 220 ~pk~~--------------------------------------------------------------------------- 224 (854)
....+
T Consensus 288 vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~ 367 (544)
T KOG0124|consen 288 VTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVITG 367 (544)
T ss_pred cCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCceecc
Confidence 10000
Q ss_pred ---------------------------------CCcc--------------------------------------ccccc
Q 003036 225 ---------------------------------PSEK--------------------------------------EINQG 233 (854)
Q Consensus 225 ---------------------------------~~~~--------------------------------------~~~~~ 233 (854)
..++ ...++
T Consensus 368 vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~ 447 (544)
T KOG0124|consen 368 VTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQEST 447 (544)
T ss_pred CCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccCc
Confidence 0000 00334
Q ss_pred ceeeecC--CCCCC---HHHHhhhhcccCceeEeeecCCcc---------cEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 003036 234 TLVVFNL--DSSVS---NDELHHIFGVYGEIKEIRETPQKI---------HQKYIEFYDTRAAEAALRELNSRYIAGKQI 299 (854)
Q Consensus 234 tLfV~NL--p~svT---eedLreiFs~fG~I~~Vrit~~sk---------G~AFVeF~d~e~A~kAl~~LNG~~I~Gk~I 299 (854)
.+.++|+ |.+++ +.+|.+.+.+||.|.+|-+..... -.-||+|....++.+|+++|+|+.|+|+++
T Consensus 448 VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~V 527 (544)
T KOG0124|consen 448 VIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKV 527 (544)
T ss_pred EEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCcee
Confidence 6777887 34444 468899999999999977732222 147999999999999999999999999999
Q ss_pred EEEecc
Q 003036 300 KLEPSH 305 (854)
Q Consensus 300 kV~~a~ 305 (854)
..+...
T Consensus 528 vAE~YD 533 (544)
T KOG0124|consen 528 VAEVYD 533 (544)
T ss_pred ehhhhh
Confidence 877643
No 58
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=7e-11 Score=111.96 Aligned_cols=77 Identities=19% Similarity=0.407 Sum_probs=71.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeee
Q 003036 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (854)
Q Consensus 144 e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~ 218 (854)
...++||||+||+..++|++|.++|+++|+|+.|. .+....|||||+|...++|+.|++.+++..+..++|+|.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 45689999999999999999999999999999988 3566889999999999999999999999999999999988
Q ss_pred cC
Q 003036 219 SI 220 (854)
Q Consensus 219 a~ 220 (854)
..
T Consensus 113 D~ 114 (153)
T KOG0121|consen 113 DA 114 (153)
T ss_pred cc
Confidence 53
No 59
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.12 E-value=1.1e-10 Score=125.23 Aligned_cols=100 Identities=16% Similarity=0.239 Sum_probs=80.6
Q ss_pred cceecCCceeeeeecCCCCCCCcccccccceeeecCCCCCCHHHHhhhhcccCceeEeee---cCCcccEEEEEeCCHHH
Q 003036 205 QNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE---TPQKIHQKYIEFYDTRA 281 (854)
Q Consensus 205 ng~~L~Gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri---t~~skG~AFVeF~d~e~ 281 (854)
++-...|..+.+.-+.. .+.....++|+|.|||+...+-||+.+|++||.|.+|.| ...+||||||+|++.++
T Consensus 73 ~~~~t~g~~~~~~~st~----s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~d 148 (376)
T KOG0125|consen 73 NGAPTDGQPIQTQPSTN----SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPAD 148 (376)
T ss_pred CCCCCCCCccccCCCCc----CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhh
Confidence 34445565555533221 112223468999999999999999999999999999887 45589999999999999
Q ss_pred HHHHHHHhCCceeCCeEEEEEeccCch
Q 003036 282 AEAALRELNSRYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 282 A~kAl~~LNG~~I~Gk~IkV~~a~pk~ 308 (854)
|++|.++|||..|.||+|.|..+..+-
T Consensus 149 adRARa~LHgt~VEGRkIEVn~ATarV 175 (376)
T KOG0125|consen 149 ADRARAELHGTVVEGRKIEVNNATARV 175 (376)
T ss_pred HHHHHHHhhcceeeceEEEEeccchhh
Confidence 999999999999999999999987753
No 60
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.12 E-value=2.7e-10 Score=104.49 Aligned_cols=83 Identities=20% Similarity=0.299 Sum_probs=76.3
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeee--cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCch
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE--TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri--t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~ 308 (854)
..+.|||.|||.++|.|+..++|.+||.|..||+ +...+|.|||.|+++.+|.+|++.|+|..+.++.+.|-|..+..
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~ 96 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPED 96 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHH
Confidence 3468999999999999999999999999999998 56678999999999999999999999999999999999999887
Q ss_pred hhhHh
Q 003036 309 LRKCL 313 (854)
Q Consensus 309 ~Rr~l 313 (854)
..+.+
T Consensus 97 ~~~~~ 101 (124)
T KOG0114|consen 97 AFKLM 101 (124)
T ss_pred HHHHH
Confidence 66644
No 61
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.10 E-value=2.9e-10 Score=104.31 Aligned_cols=80 Identities=25% Similarity=0.378 Sum_probs=73.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE--eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecC
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY--RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~--~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~ 220 (854)
+..-.+-|||+|||+++|.++..++|.+||.|+.|+ .+...+|.|||.|++..+|++|++.|+|..+.++.|.|.|-.
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 445679999999999999999999999999999999 456679999999999999999999999999999999999876
Q ss_pred CC
Q 003036 221 PK 222 (854)
Q Consensus 221 pk 222 (854)
+.
T Consensus 94 ~~ 95 (124)
T KOG0114|consen 94 PE 95 (124)
T ss_pred HH
Confidence 64
No 62
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.09 E-value=3.6e-10 Score=120.06 Aligned_cols=75 Identities=15% Similarity=0.231 Sum_probs=68.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe--CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCC
Q 003036 147 SRTLLLRKINSNIEDSELKALFEQYGDVRTFYR--ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (854)
Q Consensus 147 srtLfVgNLP~~vTEedL~elFsqfG~I~sv~~--tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk 222 (854)
.++|||+|||+.+++++|+++|+.||+|..|.+ .+..+|||||+|.++++|+.|+ .|+|..|.|+.|.|.++..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccCC
Confidence 589999999999999999999999999999984 3346899999999999999999 59999999999999987643
No 63
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.08 E-value=1.4e-09 Score=118.18 Aligned_cols=169 Identities=18% Similarity=0.226 Sum_probs=133.0
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHh--cceecCCceeeee
Q 003036 140 HLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSL--QNKLTRSGKLDIH 217 (854)
Q Consensus 140 ~p~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~L--ng~~L~Gr~L~V~ 217 (854)
.+....++-.|.|++|-..++|.+|.+.++.||.|..+.. ...+..|.|+|+|++.|++++..- +...+.|..--+.
T Consensus 24 dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~-~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~N 102 (494)
T KOG1456|consen 24 DPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTC-MPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFN 102 (494)
T ss_pred CCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEe-ccccceeeeeeccccchhhheehhccCcccccCchhhcc
Confidence 3455667889999999999999999999999999988875 456678999999999999998532 2334667777777
Q ss_pred ecCCCCCCC---ccccccccee--eecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 003036 218 YSIPKDNPS---EKEINQGTLV--VFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSR 292 (854)
Q Consensus 218 ~a~pk~~~~---~~~~~~~tLf--V~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~ 292 (854)
|+..+.-.. +.......|. |-|--+.+|-|-|..++...|.|..|.+..+..-.|.|||++.+.|++|..+|||.
T Consensus 103 yStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGA 182 (494)
T KOG1456|consen 103 YSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGA 182 (494)
T ss_pred cchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccc
Confidence 764332211 1112233343 44555689999999999999999999886666668999999999999999999999
Q ss_pred eeCC--eEEEEEeccCchh
Q 003036 293 YIAG--KQIKLEPSHLRGL 309 (854)
Q Consensus 293 ~I~G--k~IkV~~a~pk~~ 309 (854)
.|.. ++|+|+|++|...
T Consensus 183 DIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 183 DIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred cccccceeEEEEecCccee
Confidence 8863 8999999999653
No 64
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.08 E-value=4.4e-10 Score=95.80 Aligned_cols=66 Identities=26% Similarity=0.505 Sum_probs=59.0
Q ss_pred eeeecCCCCCCHHHHhhhhcccCceeEeeecC----CcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003036 235 LVVFNLDSSVSNDELHHIFGVYGEIKEIRETP----QKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIK 300 (854)
Q Consensus 235 LfV~NLp~svTeedLreiFs~fG~I~~Vrit~----~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~Ik 300 (854)
|||+|||+.+++++|+++|+.||.|..+++.. ..+++|||+|.+.++|.+|++.+++..+.|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999988733 3579999999999999999999999999999985
No 65
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.08 E-value=3.1e-10 Score=96.72 Aligned_cols=66 Identities=18% Similarity=0.391 Sum_probs=58.5
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CccccceEEEeeCCHHHHHHHHHHhcceecCCceee
Q 003036 150 LLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 215 (854)
Q Consensus 150 LfVgNLP~~vTEedL~elFsqfG~I~sv~~----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~ 215 (854)
|||+|||+++++++|+++|+.||.|..+.. .+..+++|||+|.+.++|.+|++.+++..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999988882 245689999999999999999999999999999874
No 66
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.07 E-value=3.5e-10 Score=120.18 Aligned_cols=74 Identities=22% Similarity=0.399 Sum_probs=67.6
Q ss_pred ccceeeecCCCCCCHHHHhhhhcccCceeEeeecC--CcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 003036 232 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETP--QKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (854)
Q Consensus 232 ~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~--~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~p 306 (854)
.++|||+||++.+++++|+++|+.||+|++|++.. ..++||||+|.+.++|+.|+. |||..|.|++|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 36899999999999999999999999999998833 357999999999999999995 999999999999999754
No 67
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.06 E-value=3e-10 Score=121.88 Aligned_cols=78 Identities=19% Similarity=0.339 Sum_probs=72.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE---eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCC
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFY---RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~---~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk 222 (854)
-.++|+|.|||+..-|-||+.+|++||+|.+|. ..+-+|||+||+|++.+||++|.++|+|..+.||+|.|..+.++
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 357999999999999999999999999998887 46779999999999999999999999999999999999988766
Q ss_pred C
Q 003036 223 D 223 (854)
Q Consensus 223 ~ 223 (854)
-
T Consensus 175 V 175 (376)
T KOG0125|consen 175 V 175 (376)
T ss_pred h
Confidence 3
No 68
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=2.8e-10 Score=118.14 Aligned_cols=77 Identities=18% Similarity=0.372 Sum_probs=73.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecC
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~ 220 (854)
...+|-|.||+.+++|++|++||.+||.|..|+ .++.+||||||.|.++++|.+||+.|+|.-+..-.|+|+|+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 578999999999999999999999999999988 589999999999999999999999999999999999999999
Q ss_pred CC
Q 003036 221 PK 222 (854)
Q Consensus 221 pk 222 (854)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 86
No 69
>smart00362 RRM_2 RNA recognition motif.
Probab=99.05 E-value=6.9e-10 Score=91.95 Aligned_cols=69 Identities=28% Similarity=0.523 Sum_probs=63.0
Q ss_pred ceeeecCCCCCCHHHHhhhhcccCceeEeeecCC---cccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003036 234 TLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQ---KIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLE 302 (854)
Q Consensus 234 tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~---skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~ 302 (854)
+|+|.|||..+++++|+++|+.||.|..+++... .+++|||+|.+.++|.+|++.+++..+.|++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999999999999999999999999877433 46999999999999999999999999999999873
No 70
>PLN03213 repressor of silencing 3; Provisional
Probab=99.04 E-value=4.2e-10 Score=125.30 Aligned_cols=119 Identities=13% Similarity=0.176 Sum_probs=87.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-eCccccceEEEeeCCH--HHHHHHHHHhcceecCCceeeeeecCC
Q 003036 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-RASKHCGFVTISYYDI--RAARNAMKSLQNKLTRSGKLDIHYSIP 221 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~-~tgksKGfAFVeF~d~--edA~kAl~~Lng~~L~Gr~L~V~~a~p 221 (854)
....+||||||++++++++|+.+|..||.|..|. ...+.||||||+|... .++.+||..|+|..+.|+.|+|.-++|
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 4468999999999999999999999999999988 2223499999999987 789999999999999999999998876
Q ss_pred CCCCC---c----ccccccceeeecCCCCCCHHHHhhhhcccCceeEeeec
Q 003036 222 KDNPS---E----KEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET 265 (854)
Q Consensus 222 k~~~~---~----~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit 265 (854)
.-... + ......++-+... ......|+-+|-+.++|+.+-+.
T Consensus 88 ~YLeRLkrEReea~s~~~~~~kl~k~--~~e~~qLnifFPrLrKvKslPfs 136 (759)
T PLN03213 88 HYLARLKREWEAASSTSDNTIKAPSD--SPPATHLNIFFPRLRKVKAMPLS 136 (759)
T ss_pred HHHHHHHHHHHHhhcccccccccccc--CCccceeeEeccccccccccccC
Confidence 62110 0 0001112221111 13345677778788888776553
No 71
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=5e-10 Score=116.32 Aligned_cols=77 Identities=22% Similarity=0.308 Sum_probs=72.6
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~ 305 (854)
...+|.|.||+.++++++|+++|.+||.|..|.+ ++.+||||||.|.+.++|.+||+.|||.-++.-.|+|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 4568999999999999999999999999988765 88899999999999999999999999999999999999999
Q ss_pred Cc
Q 003036 306 LR 307 (854)
Q Consensus 306 pk 307 (854)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 85
No 72
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.02 E-value=2.9e-09 Score=117.53 Aligned_cols=73 Identities=18% Similarity=0.222 Sum_probs=64.7
Q ss_pred ccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 003036 232 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (854)
Q Consensus 232 ~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a 304 (854)
.++|+|+|||.++|++.|++-|..||.|....|....+..+.|+|.++++|++|+..|+|..+.|+.|+|.|.
T Consensus 536 a~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 536 ACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 3589999999999999999999999999998773333344599999999999999999999999999999874
No 73
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.01 E-value=1.2e-09 Score=89.88 Aligned_cols=56 Identities=29% Similarity=0.525 Sum_probs=51.4
Q ss_pred HhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 003036 249 LHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (854)
Q Consensus 249 LreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a 304 (854)
|+++|++||+|+.|.+....+++|||+|.+.++|.+|++.|||..+.|++|+|+|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999986655799999999999999999999999999999999986
No 74
>smart00362 RRM_2 RNA recognition motif.
Probab=99.00 E-value=1.5e-09 Score=89.92 Aligned_cols=68 Identities=21% Similarity=0.432 Sum_probs=62.1
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEeC---ccccceEEEeeCCHHHHHHHHHHhcceecCCceeee
Q 003036 149 TLLLRKINSNIEDSELKALFEQYGDVRTFYRA---SKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (854)
Q Consensus 149 tLfVgNLP~~vTEedL~elFsqfG~I~sv~~t---gksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V 216 (854)
+|||+|||..+++++|+++|++||.|..+... +..+++|||+|.+.++|++|++.+++..+.|+++.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999988732 446799999999999999999999999999998876
No 75
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.98 E-value=5.8e-10 Score=105.83 Aligned_cols=78 Identities=21% Similarity=0.294 Sum_probs=70.5
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~ 305 (854)
.+.+|||+||...++||+|.++|+++|+|+.|-+ +..+.|||||+|.+.++|..|++-++|..++.++|+|.|.-
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 5679999999999999999999999999999876 44467999999999999999999999999999999999865
Q ss_pred Cch
Q 003036 306 LRG 308 (854)
Q Consensus 306 pk~ 308 (854)
.=.
T Consensus 115 GF~ 117 (153)
T KOG0121|consen 115 GFV 117 (153)
T ss_pred cch
Confidence 433
No 76
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.97 E-value=8.7e-10 Score=111.96 Aligned_cols=80 Identities=20% Similarity=0.399 Sum_probs=73.7
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceee
Q 003036 141 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 215 (854)
Q Consensus 141 p~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~ 215 (854)
|.+.....+|.|-||-.-++.++|+.+|++||.|-+|+ .+..++|||||.|.+..+|+.|+++|+|.+|+|+.|+
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 44445568999999999999999999999999999998 4788999999999999999999999999999999999
Q ss_pred eeecC
Q 003036 216 IHYSI 220 (854)
Q Consensus 216 V~~a~ 220 (854)
|+++.
T Consensus 87 Vq~ar 91 (256)
T KOG4207|consen 87 VQMAR 91 (256)
T ss_pred ehhhh
Confidence 99875
No 77
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.96 E-value=1.9e-09 Score=114.70 Aligned_cols=83 Identities=20% Similarity=0.338 Sum_probs=75.3
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhcceecCCce
Q 003036 139 EHLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGK 213 (854)
Q Consensus 139 e~p~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~ 213 (854)
.......|-+||||+-|+.+++|.+|++.|++||+|+.|. ++++++|||||+|+++.+...|.+..+|..|.|+.
T Consensus 93 dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrr 172 (335)
T KOG0113|consen 93 DPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRR 172 (335)
T ss_pred CCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcE
Confidence 3334456889999999999999999999999999999887 68999999999999999999999999999999999
Q ss_pred eeeeecCC
Q 003036 214 LDIHYSIP 221 (854)
Q Consensus 214 L~V~~a~p 221 (854)
|.|.+...
T Consensus 173 i~VDvERg 180 (335)
T KOG0113|consen 173 ILVDVERG 180 (335)
T ss_pred EEEEeccc
Confidence 99988653
No 78
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=6.3e-09 Score=117.66 Aligned_cols=158 Identities=18% Similarity=0.294 Sum_probs=113.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-------Cccccc---eEEEeeCCHHHHHHHHHHhcceecCCce
Q 003036 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-------ASKHCG---FVTISYYDIRAARNAMKSLQNKLTRSGK 213 (854)
Q Consensus 144 e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-------tgksKG---fAFVeF~d~edA~kAl~~Lng~~L~Gr~ 213 (854)
..-+++|||++||++++|++|...|..||.+..=.. ....+| |+|+.|+++..++.-+.+... ...+
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~ 332 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGN 332 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccc
Confidence 345899999999999999999999999998765331 223566 999999999999887765432 2222
Q ss_pred eeeeecCCCCC-------------------CCcccccccceeeecCCCCCCHHHHhhhhc-ccCceeEeeecC-----Cc
Q 003036 214 LDIHYSIPKDN-------------------PSEKEINQGTLVVFNLDSSVSNDELHHIFG-VYGEIKEIRETP-----QK 268 (854)
Q Consensus 214 L~V~~a~pk~~-------------------~~~~~~~~~tLfV~NLp~svTeedLreiFs-~fG~I~~Vrit~-----~s 268 (854)
+.+..+.+... ....-.+.+||||++||.-++.++|..+|+ -||.|..+-|+. -+
T Consensus 333 ~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYP 412 (520)
T KOG0129|consen 333 YYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYP 412 (520)
T ss_pred eEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCC
Confidence 22222222211 111112567999999999999999999999 799999977633 36
Q ss_pred ccEEEEEeCCHHHHHHHHHH----hCCceeCCeEEEEEecc
Q 003036 269 IHQKYIEFYDTRAAEAALRE----LNSRYIAGKQIKLEPSH 305 (854)
Q Consensus 269 kG~AFVeF~d~e~A~kAl~~----LNG~~I~Gk~IkV~~a~ 305 (854)
+|-|-|.|.+.++-.+||.+ |+..+| .|+|.|+...
T Consensus 413 kGaGRVtFsnqqsYi~AIsarFvql~h~d~-~KRVEIkPYv 452 (520)
T KOG0129|consen 413 KGAGRVTFSNQQAYIKAISARFVQLDHTDI-DKRVEIKPYV 452 (520)
T ss_pred CCcceeeecccHHHHHHHhhheEEEecccc-ceeeeeccee
Confidence 79999999999999999975 222222 2466665543
No 79
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.95 E-value=1.1e-09 Score=113.36 Aligned_cols=77 Identities=17% Similarity=0.320 Sum_probs=65.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeee
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~ 217 (854)
.+..-++|||++|+|++..++|++.|++||+|.+.. .++++|||+||+|+|.++|.+|++. -+-.|+||+..|.
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcn 86 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCN 86 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccc
Confidence 344557999999999999999999999999998876 4799999999999999999999964 3356889887776
Q ss_pred ecC
Q 003036 218 YSI 220 (854)
Q Consensus 218 ~a~ 220 (854)
.+.
T Consensus 87 lA~ 89 (247)
T KOG0149|consen 87 LAS 89 (247)
T ss_pred hhh
Confidence 653
No 80
>smart00360 RRM RNA recognition motif.
Probab=98.92 E-value=3.1e-09 Score=87.60 Aligned_cols=66 Identities=30% Similarity=0.538 Sum_probs=59.7
Q ss_pred eecCCCCCCHHHHhhhhcccCceeEeeec-----CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003036 237 VFNLDSSVSNDELHHIFGVYGEIKEIRET-----PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLE 302 (854)
Q Consensus 237 V~NLp~svTeedLreiFs~fG~I~~Vrit-----~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~ 302 (854)
|+|||..+++++|+++|+.||.|..+.+. +..+++|||+|.+.++|.+|++.|++..+.|++|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 67999999999999999999999998772 3346899999999999999999999999999999874
No 81
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.92 E-value=5.1e-09 Score=87.16 Aligned_cols=70 Identities=30% Similarity=0.546 Sum_probs=64.1
Q ss_pred ceeeecCCCCCCHHHHhhhhcccCceeEeeecCC----cccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003036 234 TLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQ----KIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 303 (854)
Q Consensus 234 tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~----skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~ 303 (854)
+|+|+|||..+++++|+++|+.||.|..+.+... .+++|||+|.+.++|..|++.+++..+.|+++.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999887433 378999999999999999999999999999999875
No 82
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.92 E-value=2.4e-08 Score=108.79 Aligned_cols=166 Identities=22% Similarity=0.246 Sum_probs=133.7
Q ss_pred CCCCCCcEEEEcCCCCC-CCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecC
Q 003036 142 NDEHPSRTLLLRKINSN-IEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (854)
Q Consensus 142 ~~e~psrtLfVgNLP~~-vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~ 220 (854)
.+..+...++|.+|... ++-+.|..+|..||.|..|+.-....|.|+|++.|..+.++|+..||+..+.|.+|.|.+++
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~Sk 361 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSK 361 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeecc
Confidence 45667899999999865 67789999999999999999656678999999999999999999999999999999997765
Q ss_pred CCCC------------C---------------------CcccccccceeeecCCCCCCHHHHhhhhcccCce-eEeeecC
Q 003036 221 PKDN------------P---------------------SEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEI-KEIRETP 266 (854)
Q Consensus 221 pk~~------------~---------------------~~~~~~~~tLfV~NLp~svTeedLreiFs~fG~I-~~Vrit~ 266 (854)
...- . .....++++|...|.|..+|||.|.++|..-+.. .+|++.+
T Consensus 362 Q~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp 441 (494)
T KOG1456|consen 362 QNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFP 441 (494)
T ss_pred ccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeec
Confidence 3310 0 0011256789999999999999999999866543 4455522
Q ss_pred ---CcccEEEEEeCCHHHHHHHHHHhCCceeCC------eEEEEEeccCc
Q 003036 267 ---QKIHQKYIEFYDTRAAEAALRELNSRYIAG------KQIKLEPSHLR 307 (854)
Q Consensus 267 ---~skG~AFVeF~d~e~A~kAl~~LNG~~I~G------k~IkV~~a~pk 307 (854)
.+..-+.+||++.++|..||..||...|.+ -.+++.|+.++
T Consensus 442 ~kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts~ 491 (494)
T KOG1456|consen 442 LKSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTSK 491 (494)
T ss_pred ccccccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeecccc
Confidence 233578999999999999999999999876 36777777654
No 83
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.91 E-value=1.2e-09 Score=109.27 Aligned_cols=77 Identities=27% Similarity=0.386 Sum_probs=70.1
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeeec--CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCc
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET--PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 307 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit--~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk 307 (854)
+.++|||+|||.++.+.||.++|.+||.|.+|.+. .....||||+|+++.+|+.||..-+|..++|.+|+|+|++..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 45789999999999999999999999999998873 334579999999999999999999999999999999998764
No 84
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.91 E-value=1.1e-09 Score=111.16 Aligned_cols=74 Identities=27% Similarity=0.471 Sum_probs=69.6
Q ss_pred cceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 003036 233 GTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (854)
Q Consensus 233 ~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~p 306 (854)
.+|.|-||.+-++.++|+.+|++||.|-+|.| +..++|||||.|.+..+|+.|+++|+|.+|+|+.|.|++++=
T Consensus 14 ~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 14 TSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred eeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 48999999999999999999999999999887 677899999999999999999999999999999999988753
No 85
>PLN03213 repressor of silencing 3; Provisional
Probab=98.89 E-value=3.5e-09 Score=118.12 Aligned_cols=80 Identities=23% Similarity=0.298 Sum_probs=71.0
Q ss_pred ccceeeecCCCCCCHHHHhhhhcccCceeEeeec-CCcccEEEEEeCCH--HHHHHHHHHhCCceeCCeEEEEEeccCch
Q 003036 232 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET-PQKIHQKYIEFYDT--RAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 232 ~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit-~~skG~AFVeF~d~--e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~ 308 (854)
..+|||+||.+.+++++|+.+|..||.|.+|.+. ...||||||+|.+. .++.+||..|||.++.|+.|+|..|++.-
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~Y 89 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEHY 89 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHHH
Confidence 3589999999999999999999999999998772 22389999999987 78999999999999999999999998865
Q ss_pred hhh
Q 003036 309 LRK 311 (854)
Q Consensus 309 ~Rr 311 (854)
.-|
T Consensus 90 LeR 92 (759)
T PLN03213 90 LAR 92 (759)
T ss_pred HHH
Confidence 433
No 86
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.89 E-value=6.7e-09 Score=115.37 Aligned_cols=74 Identities=27% Similarity=0.345 Sum_probs=68.8
Q ss_pred cceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEEeccC
Q 003036 233 GTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIA-GKQIKLEPSHL 306 (854)
Q Consensus 233 ~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~-Gk~IkV~~a~p 306 (854)
+.|||+.||.++.|+||.-+|++.|+|-++|+ ++.+||||||.|.+.++|++||+.||+.+|. ||.|.|..+..
T Consensus 84 ~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sva 163 (506)
T KOG0117|consen 84 CEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVA 163 (506)
T ss_pred ceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeee
Confidence 47999999999999999999999999999886 6778999999999999999999999999985 89999988754
No 87
>smart00360 RRM RNA recognition motif.
Probab=98.89 E-value=5.4e-09 Score=86.12 Aligned_cols=66 Identities=20% Similarity=0.438 Sum_probs=59.8
Q ss_pred EcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeee
Q 003036 152 LRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (854)
Q Consensus 152 VgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~ 217 (854)
|+|||..+++++|+++|++||.|..+.. +++++|+|||+|.+.++|.+|++.+++..+.|++|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6899999999999999999999988872 35568999999999999999999999999999998873
No 88
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.88 E-value=4.3e-09 Score=111.98 Aligned_cols=89 Identities=28% Similarity=0.385 Sum_probs=77.9
Q ss_pred CCCCCCCcccccccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 003036 220 IPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYI 294 (854)
Q Consensus 220 ~pk~~~~~~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I 294 (854)
.|..++....-+-.||||.-|+.+++|.+|+..|+.||.|+.|++ +++++|||||+|++..+..+|.+..+|..|
T Consensus 89 dP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~I 168 (335)
T KOG0113|consen 89 DPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKI 168 (335)
T ss_pred CCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCcee
Confidence 444444444456679999999999999999999999999999876 788999999999999999999999999999
Q ss_pred CCeEEEEEeccCch
Q 003036 295 AGKQIKLEPSHLRG 308 (854)
Q Consensus 295 ~Gk~IkV~~a~pk~ 308 (854)
+|+.|.|.+-+...
T Consensus 169 dgrri~VDvERgRT 182 (335)
T KOG0113|consen 169 DGRRILVDVERGRT 182 (335)
T ss_pred cCcEEEEEeccccc
Confidence 99999999966543
No 89
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.87 E-value=6.5e-09 Score=109.16 Aligned_cols=74 Identities=12% Similarity=0.147 Sum_probs=67.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE--eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecC
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFY--RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~--~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~ 220 (854)
...+|||+||++.+|+++|+++|+.||+|..|+ ..++.++||||+|+++++|+.|+ .|+|..|.+++|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 357999999999999999999999999999998 34567789999999999999999 799999999999996643
No 90
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.87 E-value=9.2e-09 Score=85.62 Aligned_cols=70 Identities=23% Similarity=0.481 Sum_probs=63.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCc----cccceEEEeeCCHHHHHHHHHHhcceecCCceeeeee
Q 003036 149 TLLLRKINSNIEDSELKALFEQYGDVRTFYRAS----KHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (854)
Q Consensus 149 tLfVgNLP~~vTEedL~elFsqfG~I~sv~~tg----ksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~ 218 (854)
+|+|+|||..+++++|+++|+.||.|..+.... +.+++|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 589999999999999999999999999888422 3489999999999999999999999999999998864
No 91
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1.2e-09 Score=111.78 Aligned_cols=79 Identities=19% Similarity=0.386 Sum_probs=74.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecC
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~ 220 (854)
..|||||++|..+|+|.-|...|-.||+|..|. .+.++||||||+|...|+|..||..|++..|.||.|+|.++.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 358999999999999999999999999999998 478999999999999999999999999999999999999999
Q ss_pred CCCC
Q 003036 221 PKDN 224 (854)
Q Consensus 221 pk~~ 224 (854)
|..-
T Consensus 89 P~ki 92 (298)
T KOG0111|consen 89 PEKI 92 (298)
T ss_pred Cccc
Confidence 8653
No 92
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.85 E-value=7.3e-09 Score=108.81 Aligned_cols=73 Identities=21% Similarity=0.270 Sum_probs=66.3
Q ss_pred cceeeecCCCCCCHHHHhhhhcccCceeEeee--cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 003036 233 GTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE--TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (854)
Q Consensus 233 ~tLfV~NLp~svTeedLreiFs~fG~I~~Vri--t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~p 306 (854)
.+|||+||++.+|+++|+++|+.||+|.+|++ .+..+++|||+|+++++|+.|+ .|+|..|.+++|.|.....
T Consensus 6 ~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 6 YTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred eEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCcc
Confidence 48999999999999999999999999999988 3445689999999999999999 5999999999999988653
No 93
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.84 E-value=7.7e-09 Score=85.00 Aligned_cols=56 Identities=23% Similarity=0.492 Sum_probs=50.5
Q ss_pred HHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeec
Q 003036 164 LKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (854)
Q Consensus 164 L~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a 219 (854)
|+++|++||+|..+....+.+++|||+|.+.++|++|++.|++..+.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999964444799999999999999999999999999999999985
No 94
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.83 E-value=3.5e-09 Score=101.35 Aligned_cols=76 Identities=24% Similarity=0.416 Sum_probs=70.9
Q ss_pred ceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCch
Q 003036 234 TLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 234 tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~ 308 (854)
.|||.++....++++|.+.|..||+|+.|.+ ++-.||||+|+|++.++|++|+.+|||..|.|..|.|.|+..++
T Consensus 74 Ii~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~g 153 (170)
T KOG0130|consen 74 IIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVKG 153 (170)
T ss_pred EEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEecC
Confidence 8999999999999999999999999999887 56678999999999999999999999999999999999987655
Q ss_pred h
Q 003036 309 L 309 (854)
Q Consensus 309 ~ 309 (854)
.
T Consensus 154 p 154 (170)
T KOG0130|consen 154 P 154 (170)
T ss_pred C
Confidence 3
No 95
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.82 E-value=9.9e-09 Score=105.51 Aligned_cols=75 Identities=28% Similarity=0.511 Sum_probs=70.1
Q ss_pred ccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 003036 232 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (854)
Q Consensus 232 ~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~p 306 (854)
..+|||+|||..+++++|+++|..||.|..|++ ++..+|+|||+|.+.++|..|+..++|..|.|++|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 479999999999999999999999999988765 467889999999999999999999999999999999999775
No 96
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.77 E-value=5.9e-09 Score=108.09 Aligned_cols=77 Identities=25% Similarity=0.328 Sum_probs=67.2
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~ 305 (854)
.-.+|||++|++.+..|+|++.|++||+|.+..+ ++++||||||+|.|.++|.+|++.-| -.|+||+..|.++.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccchhh
Confidence 3458999999999999999999999999998544 78899999999999999999988544 56999999999887
Q ss_pred Cch
Q 003036 306 LRG 308 (854)
Q Consensus 306 pk~ 308 (854)
-.+
T Consensus 90 lg~ 92 (247)
T KOG0149|consen 90 LGG 92 (247)
T ss_pred hcC
Confidence 644
No 97
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=3.7e-09 Score=108.18 Aligned_cols=80 Identities=25% Similarity=0.423 Sum_probs=74.0
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~ 305 (854)
..++|||++|...+++.-|...|-+||.|++|.+ +.+.|+||||+|.-.|+|.+||..||+.++.||.|+|.+++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 3469999999999999999999999999999887 56679999999999999999999999999999999999999
Q ss_pred Cchhh
Q 003036 306 LRGLR 310 (854)
Q Consensus 306 pk~~R 310 (854)
|...+
T Consensus 89 P~kik 93 (298)
T KOG0111|consen 89 PEKIK 93 (298)
T ss_pred Ccccc
Confidence 97644
No 98
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.77 E-value=1.1e-08 Score=116.44 Aligned_cols=77 Identities=22% Similarity=0.362 Sum_probs=72.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCC
Q 003036 148 RTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (854)
Q Consensus 148 rtLfVgNLP~~vTEedL~elFsqfG~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk 222 (854)
++|||||||++++|++|.++|+..|.|.+++ .+++.+||||++|.+.++|.+|++.|+|..+.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 8999999999999999999999999999988 68999999999999999999999999999999999999998655
Q ss_pred CC
Q 003036 223 DN 224 (854)
Q Consensus 223 ~~ 224 (854)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 99
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.75 E-value=1.4e-09 Score=108.59 Aligned_cols=75 Identities=17% Similarity=0.340 Sum_probs=70.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeec
Q 003036 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a 219 (854)
..+.-|||+|||.+.||.||..+|++||+|..|. .|++++||||+.|+|.++..-|+..|||..|.||.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 4578899999999999999999999999999886 58999999999999999999999999999999999999664
No 100
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.74 E-value=1.4e-08 Score=105.08 Aligned_cols=76 Identities=34% Similarity=0.559 Sum_probs=71.8
Q ss_pred cceeeecCCCCCCHHHHhh----hhcccCceeEeee--cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 003036 233 GTLVVFNLDSSVSNDELHH----IFGVYGEIKEIRE--TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (854)
Q Consensus 233 ~tLfV~NLp~svTeedLre----iFs~fG~I~~Vri--t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~p 306 (854)
+||||.||...+..++|+. +|++||+|.+|.. +++.+|.|||.|.+.+.|..|+++|+|..+.||+++|.||+.
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s 89 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKS 89 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccC
Confidence 4999999999999999999 9999999999876 777899999999999999999999999999999999999987
Q ss_pred ch
Q 003036 307 RG 308 (854)
Q Consensus 307 k~ 308 (854)
+.
T Consensus 90 ~s 91 (221)
T KOG4206|consen 90 DS 91 (221)
T ss_pred cc
Confidence 65
No 101
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.72 E-value=2e-08 Score=114.45 Aligned_cols=79 Identities=25% Similarity=0.336 Sum_probs=74.1
Q ss_pred cceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCc
Q 003036 233 GTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 307 (854)
Q Consensus 233 ~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk 307 (854)
..+||+|||+++++++|..+|+..|.|.++++ +++.+||||++|.+.++|.+|++.|||.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999876 7888999999999999999999999999999999999999876
Q ss_pred hhhh
Q 003036 308 GLRK 311 (854)
Q Consensus 308 ~~Rr 311 (854)
..+.
T Consensus 99 ~~~~ 102 (435)
T KOG0108|consen 99 KNAE 102 (435)
T ss_pred chhH
Confidence 6554
No 102
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.70 E-value=1.3e-08 Score=120.69 Aligned_cols=159 Identities=21% Similarity=0.318 Sum_probs=139.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeC----ccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeee
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRA----SKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~t----gksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~ 218 (854)
+...++|||++||+..+++.+|+..|..+|.|..|.+. +...-|+||.|.+...+-+|..++.+..|..-.+++.+
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 34568999999999999999999999999999988732 33456899999999999999999999888777777777
Q ss_pred cCCCCCCCcccccccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCC--
Q 003036 219 SIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAG-- 296 (854)
Q Consensus 219 a~pk~~~~~~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~G-- 296 (854)
..++ ......++|++|...+....|.+.|..||.|..|.+ .+..-|++|.|++...|..|...|-|..|++
T Consensus 448 G~~k------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy-~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~ 520 (975)
T KOG0112|consen 448 GQPK------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY-RHGQPYAYIQYESPPAAQAATHDMRGAPLGGPP 520 (975)
T ss_pred cccc------cccceeeccCCCCCCChHHHHHHHhhccCcceeeec-ccCCcceeeecccCccchhhHHHHhcCcCCCCC
Confidence 6653 234568999999999999999999999999999987 5566799999999999999999999999997
Q ss_pred eEEEEEeccCch
Q 003036 297 KQIKLEPSHLRG 308 (854)
Q Consensus 297 k~IkV~~a~pk~ 308 (854)
+++.|.|+.+..
T Consensus 521 ~r~rvdla~~~~ 532 (975)
T KOG0112|consen 521 RRLRVDLASPPG 532 (975)
T ss_pred cccccccccCCC
Confidence 889999998765
No 103
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.69 E-value=4.1e-09 Score=105.36 Aligned_cols=73 Identities=22% Similarity=0.384 Sum_probs=68.5
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 303 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~ 303 (854)
.+.-|||+|||+.+||.||.-+|++||+|..|.+ |++++||||+.|++..+..-|+..|||..|.||.|+|..
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 4568999999999999999999999999999765 889999999999999999999999999999999999975
No 104
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.68 E-value=2.9e-08 Score=104.13 Aligned_cols=96 Identities=17% Similarity=0.268 Sum_probs=79.3
Q ss_pred ceeeeeecCCCCCCCcccccccceeeecCCCCCCHHHHhhhhcccCceeEeee----cCCcccEEEEEeCCHHHHHHHHH
Q 003036 212 GKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALR 287 (854)
Q Consensus 212 r~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri----t~~skG~AFVeF~d~e~A~kAl~ 287 (854)
|+|.|+.+..... ....++|||+-|.+.-.|||++.+|..||.|.+|.+ .+.+|||+||+|.+..+|..||.
T Consensus 3 rpiqvkpadsesr----g~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~ 78 (371)
T KOG0146|consen 3 RPIQVKPADSESR----GGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAIN 78 (371)
T ss_pred CCccccccccccC----CccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHH
Confidence 5666655433222 224578999999999999999999999999999877 56789999999999999999999
Q ss_pred HhCCce-eCC--eEEEEEeccCchhhh
Q 003036 288 ELNSRY-IAG--KQIKLEPSHLRGLRK 311 (854)
Q Consensus 288 ~LNG~~-I~G--k~IkV~~a~pk~~Rr 311 (854)
.|+|.. +-| ..|.|+|+..+.+|.
T Consensus 79 aLHgSqTmpGASSSLVVK~ADTdkER~ 105 (371)
T KOG0146|consen 79 ALHGSQTMPGASSSLVVKFADTDKERT 105 (371)
T ss_pred HhcccccCCCCccceEEEeccchHHHH
Confidence 999964 444 789999999888775
No 105
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.67 E-value=3.4e-08 Score=115.59 Aligned_cols=77 Identities=25% Similarity=0.411 Sum_probs=72.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCCCC
Q 003036 147 SRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDN 224 (854)
Q Consensus 147 srtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk~~ 224 (854)
+|||||+.|+..++|.||..+|+.||+|.+|.. ...+|||||.+....+|.+|+.+|.+..+.++.|+|.|+..+.-
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~l-i~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ 497 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIIL-IPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGP 497 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEee-ccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCc
Confidence 799999999999999999999999999999986 67899999999999999999999999999999999999976643
No 106
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.67 E-value=3.1e-08 Score=94.93 Aligned_cols=78 Identities=13% Similarity=0.371 Sum_probs=71.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeec
Q 003036 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a 219 (854)
...-.|||.++-.+++|++|.+.|..||+|+.|. .++-.||||+|+|++.++|++|+.++||..|.|.+|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 3456899999999999999999999999999987 47888999999999999999999999999999999999997
Q ss_pred CCC
Q 003036 220 IPK 222 (854)
Q Consensus 220 ~pk 222 (854)
.-+
T Consensus 150 Fv~ 152 (170)
T KOG0130|consen 150 FVK 152 (170)
T ss_pred Eec
Confidence 544
No 107
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.66 E-value=1.2e-07 Score=103.75 Aligned_cols=164 Identities=12% Similarity=0.184 Sum_probs=118.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcc-----C--CeEEEE-eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeee
Q 003036 147 SRTLLLRKINSNIEDSELKALFEQY-----G--DVRTFY-RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (854)
Q Consensus 147 srtLfVgNLP~~vTEedL~elFsqf-----G--~I~sv~-~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~ 218 (854)
.-.|-+++||+++++.++.++|.+- | .|.-|+ ..++..|-|||.|..+++|+.|+.. +...|..|-|.+-.
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFR 239 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFR 239 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHH
Confidence 3467788999999999999999622 2 233333 4788999999999999999999964 33333333222210
Q ss_pred c----------------------CCC-----CCCCcccccccceeeecCCCCCCHHHHhhhhcccCc-eeE--eee----
Q 003036 219 S----------------------IPK-----DNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGE-IKE--IRE---- 264 (854)
Q Consensus 219 a----------------------~pk-----~~~~~~~~~~~tLfV~NLp~svTeedLreiFs~fG~-I~~--Vri---- 264 (854)
+ .|- ............|.+++||+..+.|+|.++|..|-. |+. |.+
T Consensus 240 STaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~ 319 (508)
T KOG1365|consen 240 STAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG 319 (508)
T ss_pred HhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC
Confidence 0 000 000111123568999999999999999999998865 322 444
Q ss_pred cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCchhhh
Q 003036 265 TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGLRK 311 (854)
Q Consensus 265 t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~~Rr 311 (854)
.++..|-|||+|.+.|+|..|....+.+..+.+.|.|-.+..++..+
T Consensus 320 qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eeln~ 366 (508)
T KOG1365|consen 320 QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEELNE 366 (508)
T ss_pred CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHHHH
Confidence 46677999999999999999999999888889999998887666544
No 108
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.63 E-value=2.8e-08 Score=105.60 Aligned_cols=72 Identities=28% Similarity=0.432 Sum_probs=68.9
Q ss_pred ceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCch
Q 003036 234 TLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 234 tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~ 308 (854)
+|||+|||..+++.+|+.+|++||+|.+|.| -|.||||..++...|+.||+.|||..|.|..|.|+-++.|.
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDI---vKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDI---VKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeee---ecccceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 6999999999999999999999999999998 57899999999999999999999999999999999998873
No 109
>smart00361 RRM_1 RNA recognition motif.
Probab=98.62 E-value=8.8e-08 Score=82.69 Aligned_cols=57 Identities=30% Similarity=0.564 Sum_probs=50.4
Q ss_pred HHHHhhhhc----ccCceeEee---e---c--CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003036 246 NDELHHIFG----VYGEIKEIR---E---T--PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLE 302 (854)
Q Consensus 246 eedLreiFs----~fG~I~~Vr---i---t--~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~ 302 (854)
+++|+++|+ .||.|.+|. + + +.++|+|||+|.+.++|.+|++.|||..+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888888 999999874 2 2 5679999999999999999999999999999999863
No 110
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.59 E-value=7.5e-08 Score=110.66 Aligned_cols=163 Identities=17% Similarity=0.272 Sum_probs=130.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcc-----------C-CeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCC
Q 003036 144 EHPSRTLLLRKINSNIEDSELKALFEQY-----------G-DVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRS 211 (854)
Q Consensus 144 e~psrtLfVgNLP~~vTEedL~elFsqf-----------G-~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~G 211 (854)
....+.+||+++|+.++++....+|..- | .|..+.. ...+.||||+|.+.++|..|+ .+++..+.|
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~-n~~~nfa~ie~~s~~~at~~~-~~~~~~f~g 249 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL-NLEKNFAFIEFRSISEATEAM-ALDGIIFEG 249 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee-cccccceeEEecCCCchhhhh-cccchhhCC
Confidence 3446899999999999999999888743 3 3666665 678899999999999999998 678888888
Q ss_pred ceeeeeecCCCCC------------------C-CcccccccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCC
Q 003036 212 GKLDIHYSIPKDN------------------P-SEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQ 267 (854)
Q Consensus 212 r~L~V~~a~pk~~------------------~-~~~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~ 267 (854)
.++++.-...... . .........++|++||..+++++++++...||.++..++ ++.
T Consensus 250 ~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~ 329 (500)
T KOG0120|consen 250 RPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGN 329 (500)
T ss_pred CCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccccccc
Confidence 8777632111100 0 000113348999999999999999999999999887443 467
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCch
Q 003036 268 KIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 268 skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~ 308 (854)
+++|||.+|.++.....|+..|||..+++++|.|..+....
T Consensus 330 skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~ 370 (500)
T KOG0120|consen 330 SKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGA 370 (500)
T ss_pred ccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccc
Confidence 89999999999999999999999999999999999987754
No 111
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.57 E-value=2.1e-08 Score=102.93 Aligned_cols=136 Identities=18% Similarity=0.197 Sum_probs=108.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecC
Q 003036 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~ 220 (854)
+..+||||.|+-..|+|+.|.++|-+.|+|..|. ...+.| ||||.|.++-...-|+..+||..+.++.+.|.+-.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 3469999999999999999999999999999988 234455 99999999999999999999999999988886532
Q ss_pred CCCCCCcccccccceeeecCCCCCCHHHHhhhhcccCceeEeee----cCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 003036 221 PKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYI 294 (854)
Q Consensus 221 pk~~~~~~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I 294 (854)
-..- .-|+..++++.+..+|+.-|.+..+++ .+..+.++|+.+....+.-.|+..-.+...
T Consensus 86 G~sh-------------apld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 86 GNSH-------------APLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred CCCc-------------chhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 1100 015567899999999999999988887 344677888888777777777665554433
No 112
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.57 E-value=5.5e-08 Score=97.54 Aligned_cols=74 Identities=27% Similarity=0.354 Sum_probs=68.9
Q ss_pred ccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 003036 232 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (854)
Q Consensus 232 ~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~ 305 (854)
..+|||+||+..++++.|+++|-+.|.|..+++ +...+|||||+|.+.|+|+-|++-||...+.||+|+|..+.
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 359999999999999999999999999999887 44568999999999999999999999999999999999886
No 113
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.54 E-value=1.3e-07 Score=110.91 Aligned_cols=82 Identities=26% Similarity=0.314 Sum_probs=76.4
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCchhh
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGLR 310 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~~R 310 (854)
.++||||+.|+..+++.||..+|+.||+|.+|.+ -..++||||+....++|.+|+.+|+...+.++.|+|.|+..++.|
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~l-i~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~k 498 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIIL-IPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPK 498 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEee-ccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcc
Confidence 6789999999999999999999999999999998 447899999999999999999999999999999999999998877
Q ss_pred hHh
Q 003036 311 KCL 313 (854)
Q Consensus 311 r~l 313 (854)
..+
T Consensus 499 se~ 501 (894)
T KOG0132|consen 499 SEY 501 (894)
T ss_pred hhh
Confidence 633
No 114
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.53 E-value=2.5e-07 Score=100.48 Aligned_cols=83 Identities=19% Similarity=0.340 Sum_probs=73.1
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhc-ceecCCceeeee
Q 003036 139 EHLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQ-NKLTRSGKLDIH 217 (854)
Q Consensus 139 e~p~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Ln-g~~L~Gr~L~V~ 217 (854)
..|..+...++|||++|-..++|.+|++.|.+||+|+++.. -..+++|||+|.+.++|+.|..++- ...|.|++|.|.
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~-~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRI-LPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEe-ecccccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 56677788899999999999999999999999999999996 3456799999999999999987654 456899999999
Q ss_pred ecCCC
Q 003036 218 YSIPK 222 (854)
Q Consensus 218 ~a~pk 222 (854)
|..++
T Consensus 299 Wg~~~ 303 (377)
T KOG0153|consen 299 WGRPK 303 (377)
T ss_pred eCCCc
Confidence 99884
No 115
>smart00361 RRM_1 RNA recognition motif.
Probab=98.50 E-value=2.5e-07 Score=79.91 Aligned_cols=57 Identities=18% Similarity=0.303 Sum_probs=50.6
Q ss_pred CHHHHHHHhh----ccCCeEEEE---e---C--ccccceEEEeeCCHHHHHHHHHHhcceecCCceeee
Q 003036 160 EDSELKALFE----QYGDVRTFY---R---A--SKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (854)
Q Consensus 160 TEedL~elFs----qfG~I~sv~---~---t--gksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V 216 (854)
.+++|+++|+ +||.|.++. . + +.++|||||+|.+.++|.+|++.|+|..+.|+.|++
T Consensus 1 ~~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 1 KDEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred CchhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 3678999998 999998873 1 2 778999999999999999999999999999999876
No 116
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.47 E-value=2.5e-07 Score=100.56 Aligned_cols=77 Identities=27% Similarity=0.400 Sum_probs=68.8
Q ss_pred cccccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHH-hCCceeCCeEEEEEeccC
Q 003036 229 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRE-LNSRYIAGKQIKLEPSHL 306 (854)
Q Consensus 229 ~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~-LNG~~I~Gk~IkV~~a~p 306 (854)
+....+|||++|-..+++.+|+++|.+||+|++|++.. .+++|||+|.+.++|++|..+ +|...|.|++|+|.|+++
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~-~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP-RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec-ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 34557999999999999999999999999999999844 567999999999999999866 477789999999999988
No 117
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.35 E-value=9.2e-08 Score=105.52 Aligned_cols=150 Identities=15% Similarity=0.301 Sum_probs=123.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcc--CCeEEEEeCccccceEEEeeCCHHHHHHHHHHhccee-cCCceeeeeecCCCCC
Q 003036 148 RTLLLRKINSNIEDSELKALFEQY--GDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKL-TRSGKLDIHYSIPKDN 224 (854)
Q Consensus 148 rtLfVgNLP~~vTEedL~elFsqf--G~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~-L~Gr~L~V~~a~pk~~ 224 (854)
.++|++||.+.++.++|+.+|... +--..+ -...||+||.+.+...|.+|++.++|+. +.|+++.|.++.++..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~f---l~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQF---LVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcce---eeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 468999999999999999999854 111111 1246899999999999999999999975 8999999999887754
Q ss_pred CCcccccccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCc--ccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003036 225 PSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQK--IHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLE 302 (854)
Q Consensus 225 ~~~~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~s--kG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~ 302 (854)
+ .+.+-|.|+|+...++.|..+...||.+..|..+... .-..-|+|...+.+..||..|+|..+....++|.
T Consensus 79 r------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~ 152 (584)
T KOG2193|consen 79 R------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVG 152 (584)
T ss_pred H------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcc
Confidence 4 3469999999999999999999999999887652222 2234578999999999999999999999999999
Q ss_pred eccC
Q 003036 303 PSHL 306 (854)
Q Consensus 303 ~a~p 306 (854)
|--.
T Consensus 153 YiPd 156 (584)
T KOG2193|consen 153 YIPD 156 (584)
T ss_pred cCch
Confidence 9643
No 118
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.33 E-value=5.2e-07 Score=98.46 Aligned_cols=163 Identities=21% Similarity=0.255 Sum_probs=129.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeec
Q 003036 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a 219 (854)
....++|++++.+.+.+.++..++..+|.+.... ....++|++.|.|...+.+..|+.....+.+.++.+.....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 3578999999999999999999999999665554 45678999999999999999999765555666665554443
Q ss_pred CCCCCCCc-----c-ccccccee-eecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHH
Q 003036 220 IPKDNPSE-----K-EINQGTLV-VFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALR 287 (854)
Q Consensus 220 ~pk~~~~~-----~-~~~~~tLf-V~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~ 287 (854)
........ . .....+++ |.+++..+++++|+..|..+|.|..+++ ++..+++|+|+|.....+..|+.
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhh
Confidence 33221110 0 11233555 9999999999999999999999999887 45568999999999999999998
Q ss_pred HhCCceeCCeEEEEEeccCch
Q 003036 288 ELNSRYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 288 ~LNG~~I~Gk~IkV~~a~pk~ 308 (854)
. ....+.++++.|.+..+..
T Consensus 246 ~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 246 D-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred c-ccCcccCcccccccCCCCc
Confidence 8 8889999999999988764
No 119
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.24 E-value=2.6e-06 Score=87.29 Aligned_cols=82 Identities=20% Similarity=0.338 Sum_probs=72.8
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcc-CCeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhcceecCCcee
Q 003036 141 LNDEHPSRTLLLRKINSNIEDSELKALFEQY-GDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKL 214 (854)
Q Consensus 141 p~~e~psrtLfVgNLP~~vTEedL~elFsqf-G~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L 214 (854)
........-+||..+|.-+.+.+|..+|.+| |.|+.++ .||.+||||||+|++++.|.-|.+.||++.+.++.|
T Consensus 43 ~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL 122 (214)
T KOG4208|consen 43 KPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLL 122 (214)
T ss_pred CCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhhee
Confidence 3445566789999999999999999999999 6777766 589999999999999999999999999999999999
Q ss_pred eeeecCCC
Q 003036 215 DIHYSIPK 222 (854)
Q Consensus 215 ~V~~a~pk 222 (854)
.|++-.|.
T Consensus 123 ~c~vmppe 130 (214)
T KOG4208|consen 123 ECHVMPPE 130 (214)
T ss_pred eeEEeCch
Confidence 99997654
No 120
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.20 E-value=1.8e-07 Score=110.95 Aligned_cols=139 Identities=9% Similarity=0.133 Sum_probs=119.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCC
Q 003036 147 SRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 221 (854)
Q Consensus 147 srtLfVgNLP~~vTEedL~elFsqfG~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~p 221 (854)
..++||+||+..+.+.+|...|..+|-+..+. ..++.+|+|||.|.++++|.+|+.....+ +.|
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~-~~g---------- 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSC-FFG---------- 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhh-hhh----------
Confidence 46899999999999999999999999776665 46788999999999999999999644433 333
Q ss_pred CCCCCcccccccceeeecCCCCCCHHHHhhhhcccCceeEeee----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 003036 222 KDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGK 297 (854)
Q Consensus 222 k~~~~~~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk 297 (854)
...++|.|.|+..|.++|+.++..+|.+++++. .++.+|.++|.|.+..+|.+++...+...+.-+
T Consensus 736 ----------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~ 805 (881)
T KOG0128|consen 736 ----------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKREN 805 (881)
T ss_pred ----------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhc
Confidence 246899999999999999999999999999765 467889999999999999999999888888877
Q ss_pred EEEEEeccC
Q 003036 298 QIKLEPSHL 306 (854)
Q Consensus 298 ~IkV~~a~p 306 (854)
.+.|..+.|
T Consensus 806 ~~~v~vsnp 814 (881)
T KOG0128|consen 806 NGEVQVSNP 814 (881)
T ss_pred CccccccCC
Confidence 777777665
No 121
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=2.1e-06 Score=93.34 Aligned_cols=79 Identities=16% Similarity=0.386 Sum_probs=73.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeee
Q 003036 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (854)
Q Consensus 144 e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~ 218 (854)
.+|...|||..|.+-+++++|.-+|+.||.|.+|. .++.+..||||+|++.+++++|.-.|++..|..+.|.|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 46778999999999999999999999999999987 5788899999999999999999999999999999999999
Q ss_pred cCCC
Q 003036 219 SIPK 222 (854)
Q Consensus 219 a~pk 222 (854)
+..-
T Consensus 316 SQSV 319 (479)
T KOG0415|consen 316 SQSV 319 (479)
T ss_pred hhhh
Confidence 8643
No 122
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=2e-06 Score=93.50 Aligned_cols=78 Identities=22% Similarity=0.388 Sum_probs=71.2
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a 304 (854)
++.+.|||..|.+-+++++|.-||+.||.|.+|.+ ++.+-.||||+|++.+++++|.-+|+...|.+++|.|.|+
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 35679999999999999999999999999999766 5666789999999999999999999999999999999998
Q ss_pred cCc
Q 003036 305 HLR 307 (854)
Q Consensus 305 ~pk 307 (854)
+.-
T Consensus 317 QSV 319 (479)
T KOG0415|consen 317 QSV 319 (479)
T ss_pred hhh
Confidence 753
No 123
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=98.15 E-value=2.2e-06 Score=87.45 Aligned_cols=91 Identities=19% Similarity=0.351 Sum_probs=60.6
Q ss_pred CcceeEEeecCCCCCCHHHHHHHHHhhCCCcceeEEec--cc--ccccceeEEEEEecCCccchHHHHHHhcCceecCCC
Q 003036 681 DNRTTLMIKNIPNKYTSKMLLAAIDERHKGTYDFIYLP--ID--FKNKCNVGYAFINMTDPSQIVPFYQSFNGKKWEKFN 756 (854)
Q Consensus 681 d~rTTvMirNIPnk~t~~~L~~~id~~~~g~yDf~Ylp--~D--f~~~~N~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~ 756 (854)
..++.|.||+||+.+|.+.+++.|+......++|-|.+ .+ --..+-...|||||.+.+++..|.+.|+|+.|..-.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 46889999999999999999998887666675555554 22 223445788999999999999999999999998765
Q ss_pred Cc-cEEEEEeeccccH
Q 003036 757 SE-KVASLAYARIQGK 771 (854)
Q Consensus 757 s~-K~~~v~yA~iQG~ 771 (854)
.. -++.|.||-.|-.
T Consensus 85 g~~~~~~VE~Apyqk~ 100 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQKV 100 (176)
T ss_dssp S-EEEEEEEE-SS---
T ss_pred CCCcceeEEEcchhcc
Confidence 44 6799999998753
No 124
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.15 E-value=4.6e-06 Score=91.77 Aligned_cols=114 Identities=17% Similarity=0.255 Sum_probs=85.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecC
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~ 220 (854)
.+++|||++||.++++++|++.|++||.|..+. .+.+.+||+||.|.+++++++++ ...-..|.++.+.|..+.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceec-ccceeeecCceeeEeecc
Confidence 578999999999999999999999999887765 46789999999999999999998 456788999999999999
Q ss_pred CCCCCCcccccc-cceeeecCCCCCCHHHHhhhhcccCcee
Q 003036 221 PKDNPSEKEINQ-GTLVVFNLDSSVSNDELHHIFGVYGEIK 260 (854)
Q Consensus 221 pk~~~~~~~~~~-~tLfV~NLp~svTeedLreiFs~fG~I~ 260 (854)
|++......... ...+..|+....+.-.|...|.-|+.+.
T Consensus 175 pk~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~g~~~~~ 215 (311)
T KOG4205|consen 175 PKEVMQSTKSSVSTRGKGNNLGNGRTGFFLKKYFKGYGPVG 215 (311)
T ss_pred chhhccccccccccccccccccccccccccchhccccCccc
Confidence 987543322111 1222224444444445556666666543
No 125
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.13 E-value=1.6e-06 Score=91.01 Aligned_cols=162 Identities=18% Similarity=0.232 Sum_probs=119.3
Q ss_pred CcEEEEcCCCCCCCHHH-H--HHHhhccCCeEEEE----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeec
Q 003036 147 SRTLLLRKINSNIEDSE-L--KALFEQYGDVRTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (854)
Q Consensus 147 srtLfVgNLP~~vTEed-L--~elFsqfG~I~sv~----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a 219 (854)
--..++.++-..+..+- | ...|+.|-.++..+ ..++-++++|+.|.....-.++-..-+++.+.-+++++.-.
T Consensus 96 vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~g 175 (290)
T KOG0226|consen 96 VFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAG 175 (290)
T ss_pred cccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccc
Confidence 34567777776666655 3 56777666554443 35677899999999887777777666777777776666444
Q ss_pred CCCCCCCcc--cccccceeeecCCCCCCHHHHhhhhcccCcee---Eeee--cCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 003036 220 IPKDNPSEK--EINQGTLVVFNLDSSVSNDELHHIFGVYGEIK---EIRE--TPQKIHQKYIEFYDTRAAEAALRELNSR 292 (854)
Q Consensus 220 ~pk~~~~~~--~~~~~tLfV~NLp~svTeedLreiFs~fG~I~---~Vri--t~~skG~AFVeF~d~e~A~kAl~~LNG~ 292 (854)
..-.+.... +.+.-+||.+.|..+++++.|-..|.+|-... .|+. +++++||+||.|.++.++.+|+++|||+
T Consensus 176 tswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gk 255 (290)
T KOG0226|consen 176 TSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGK 255 (290)
T ss_pred cccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccc
Confidence 333333221 22345899999999999999999999886532 2333 7889999999999999999999999999
Q ss_pred eeCCeEEEEEeccCch
Q 003036 293 YIAGKQIKLEPSHLRG 308 (854)
Q Consensus 293 ~I~Gk~IkV~~a~pk~ 308 (854)
.++.++|++.-+.-++
T Consensus 256 yVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 256 YVGSRPIKLRKSEWKE 271 (290)
T ss_pred ccccchhHhhhhhHHh
Confidence 9999999987654443
No 126
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.10 E-value=5.9e-06 Score=84.74 Aligned_cols=77 Identities=16% Similarity=0.238 Sum_probs=71.5
Q ss_pred cccceeeecCCCCCCHHHHhhhhccc-CceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVY-GEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~f-G~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a 304 (854)
..+.++|..+|.-+.+.++...|.+| |.|..+++ |+.++|||||+|++.+.|..|.+.||+..+.++.|.|.+-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 45689999999999999999999998 77888777 8889999999999999999999999999999999999998
Q ss_pred cCc
Q 003036 305 HLR 307 (854)
Q Consensus 305 ~pk 307 (854)
.|+
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 887
No 127
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.06 E-value=6.3e-06 Score=96.23 Aligned_cols=85 Identities=13% Similarity=0.285 Sum_probs=75.6
Q ss_pred cCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE--------eCccccceEEEeeCCHHHHHHHHHHhccee
Q 003036 137 AGEHLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY--------RASKHCGFVTISYYDIRAARNAMKSLQNKL 208 (854)
Q Consensus 137 ~ge~p~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~--------~tgksKGfAFVeF~d~edA~kAl~~Lng~~ 208 (854)
.|....+++.+++|||+||++.++++.|...|..||+|.+++ ...+.+.|+||.|-+..+|++|++.|+|..
T Consensus 164 ~gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~i 243 (877)
T KOG0151|consen 164 PGSFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGII 243 (877)
T ss_pred CCcCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhccee
Confidence 345555677789999999999999999999999999999988 245578899999999999999999999999
Q ss_pred cCCceeeeeecCC
Q 003036 209 TRSGKLDIHYSIP 221 (854)
Q Consensus 209 L~Gr~L~V~~a~p 221 (854)
+.+..+++.|+++
T Consensus 244 v~~~e~K~gWgk~ 256 (877)
T KOG0151|consen 244 VMEYEMKLGWGKA 256 (877)
T ss_pred eeeeeeeeccccc
Confidence 9999999999843
No 128
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.96 E-value=1.3e-05 Score=91.35 Aligned_cols=76 Identities=17% Similarity=0.256 Sum_probs=67.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeec
Q 003036 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a 219 (854)
.-.|+|||.+|...+-..+|+.+|++||+|.-.+ .+.-.++|+||++.+.++|.+||..|+.+.|.|+.|.|.-+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 4478999999999999999999999999998766 13345889999999999999999999999999999999776
Q ss_pred C
Q 003036 220 I 220 (854)
Q Consensus 220 ~ 220 (854)
+
T Consensus 483 K 483 (940)
T KOG4661|consen 483 K 483 (940)
T ss_pred c
Confidence 4
No 129
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.94 E-value=2.2e-05 Score=83.55 Aligned_cols=80 Identities=20% Similarity=0.341 Sum_probs=70.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeee
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~ 218 (854)
.+.-..+|+|.|||..|+++||+++|+.||.+..+- ..+.+.|.|-|.|...++|.+|++.+++..+.|++|.+..
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 344457899999999999999999999999877765 5788999999999999999999999999999999998877
Q ss_pred cCCC
Q 003036 219 SIPK 222 (854)
Q Consensus 219 a~pk 222 (854)
..+.
T Consensus 159 i~~~ 162 (243)
T KOG0533|consen 159 ISSP 162 (243)
T ss_pred ecCc
Confidence 6543
No 130
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.90 E-value=2.8e-05 Score=80.58 Aligned_cols=80 Identities=21% Similarity=0.270 Sum_probs=67.2
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeE--eeecCCc----ccEEEEEeCCHHHHHHHHHHhCCceeC---CeEEEE
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKE--IRETPQK----IHQKYIEFYDTRAAEAALRELNSRYIA---GKQIKL 301 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~--Vrit~~s----kG~AFVeF~d~e~A~kAl~~LNG~~I~---Gk~IkV 301 (854)
..+||||.+||.++...||..+|..|-.-+. ++.+.+. +-+|||.|.+.++|.+|+.+|||..|+ +..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 3579999999999999999999999865544 4555443 369999999999999999999999986 689999
Q ss_pred EeccCchhh
Q 003036 302 EPSHLRGLR 310 (854)
Q Consensus 302 ~~a~pk~~R 310 (854)
++++....+
T Consensus 113 ElAKSNtK~ 121 (284)
T KOG1457|consen 113 ELAKSNTKR 121 (284)
T ss_pred eehhcCccc
Confidence 999876533
No 131
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.90 E-value=1.5e-05 Score=90.99 Aligned_cols=76 Identities=18% Similarity=0.344 Sum_probs=68.3
Q ss_pred ccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 003036 232 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (854)
Q Consensus 232 ~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~p 306 (854)
.++|||.+|...+...+|+.+|++||.|+-.++ ++.-+.|+||++.+.++|.+||..|+.+++.|+.|.|+.++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 348999999999999999999999999988665 344578999999999999999999999999999999998765
Q ss_pred c
Q 003036 307 R 307 (854)
Q Consensus 307 k 307 (854)
.
T Consensus 485 E 485 (940)
T KOG4661|consen 485 E 485 (940)
T ss_pred C
Confidence 3
No 132
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.89 E-value=7.8e-06 Score=85.40 Aligned_cols=71 Identities=21% Similarity=0.403 Sum_probs=66.5
Q ss_pred ceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCc
Q 003036 234 TLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 307 (854)
Q Consensus 234 tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk 307 (854)
.+||++||+.+.+.+|..+|..||.|.++.+ ..+|+||+|.+..+|..|+..||+++|.|.++.|+|++.+
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m---k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADM---KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred ceeecccCCccchhHHHHHHhhcccccccee---ecccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 5899999999999999999999999999988 5689999999999999999999999999988999998753
No 133
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.82 E-value=2.1e-05 Score=91.97 Aligned_cols=78 Identities=24% Similarity=0.368 Sum_probs=70.5
Q ss_pred cccccceeeecCCCCCCHHHHhhhhcccCceeEeee--------cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003036 229 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE--------TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIK 300 (854)
Q Consensus 229 ~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri--------t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~Ik 300 (854)
+...++|||+||++.++++.|...|..||.|..|++ ....+.|+||-|-+..+|++|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 345679999999999999999999999999999887 223467999999999999999999999999999999
Q ss_pred EEeccC
Q 003036 301 LEPSHL 306 (854)
Q Consensus 301 V~~a~p 306 (854)
+.|++.
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999864
No 134
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.78 E-value=4.5e-05 Score=81.24 Aligned_cols=77 Identities=22% Similarity=0.363 Sum_probs=69.0
Q ss_pred ccceeeecCCCCCCHHHHhhhhcccCceeEeee----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCc
Q 003036 232 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 307 (854)
Q Consensus 232 ~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk 307 (854)
..+|+|.|||+.++++||+++|..||.++.+-+ .+.+.|.|-|.|...++|.+|++.+||..++|+++++....+.
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 357999999999999999999999998877655 5667799999999999999999999999999999999887664
Q ss_pred h
Q 003036 308 G 308 (854)
Q Consensus 308 ~ 308 (854)
.
T Consensus 163 ~ 163 (243)
T KOG0533|consen 163 S 163 (243)
T ss_pred c
Confidence 4
No 135
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.72 E-value=4e-05 Score=87.44 Aligned_cols=75 Identities=17% Similarity=0.304 Sum_probs=62.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecC
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~ 220 (854)
...+|||+|||.++++++|+++|.+||+|+...+ .++..+||||+|++.++++.|+.+ +-..|.+++|.|+--+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 3456999999999999999999999999988762 244458999999999999999976 4677889999997544
Q ss_pred C
Q 003036 221 P 221 (854)
Q Consensus 221 p 221 (854)
+
T Consensus 366 ~ 366 (419)
T KOG0116|consen 366 P 366 (419)
T ss_pred c
Confidence 3
No 136
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.60 E-value=0.00025 Score=65.68 Aligned_cols=73 Identities=19% Similarity=0.339 Sum_probs=59.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcc--CCeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhcceecC----Cceeee
Q 003036 148 RTLLLRKINSNIEDSELKALFEQY--GDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTR----SGKLDI 216 (854)
Q Consensus 148 rtLfVgNLP~~vTEedL~elFsqf--G~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~----Gr~L~V 216 (854)
+||.|+|||...+.++|.+++... |...-++ .+..+.|||||.|.+++.|.+..+.++|+.+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 699999999999999999888753 4444444 46778999999999999999999999998875 455667
Q ss_pred eecC
Q 003036 217 HYSI 220 (854)
Q Consensus 217 ~~a~ 220 (854)
.||.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 7664
No 137
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.59 E-value=7.9e-05 Score=85.09 Aligned_cols=74 Identities=23% Similarity=0.328 Sum_probs=63.5
Q ss_pred cceeeecCCCCCCHHHHhhhhcccCceeEeee---c--CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCc
Q 003036 233 GTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE---T--PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 307 (854)
Q Consensus 233 ~tLfV~NLp~svTeedLreiFs~fG~I~~Vri---t--~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk 307 (854)
.+|||.|||.+++.++|+++|..||.|+..+| . .....||||+|.+.++++.||.+- -..|++++|.|+-.++.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEecccc
Confidence 36999999999999999999999999998665 1 223389999999999999999865 77899999999886653
No 138
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.58 E-value=0.00023 Score=63.84 Aligned_cols=70 Identities=19% Similarity=0.281 Sum_probs=49.4
Q ss_pred cEEEEcCCCCCCCHHHHH----HHhhccC-CeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCC
Q 003036 148 RTLLLRKINSNIEDSELK----ALFEQYG-DVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (854)
Q Consensus 148 rtLfVgNLP~~vTEedL~----elFsqfG-~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk 222 (854)
..|||.|||.+.+...|+ +++..|| +|..|. .+.|+|.|.+.+.|++|.+.|+|..+.|++|.|.|....
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~ 77 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKN 77 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCc
Confidence 469999999999887655 6777786 777663 488999999999999999999999999999999997433
No 139
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.55 E-value=0.00013 Score=79.77 Aligned_cols=74 Identities=16% Similarity=0.284 Sum_probs=65.9
Q ss_pred ccceeeecCCCCCCHHHHhhhhcccCceeE--------eee----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 003036 232 QGTLVVFNLDSSVSNDELHHIFGVYGEIKE--------IRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQI 299 (854)
Q Consensus 232 ~~tLfV~NLp~svTeedLreiFs~fG~I~~--------Vri----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~I 299 (854)
+..|||.|||.++|.+++.++|+++|.|.. |++ .+.-+|=|++.|...++..-|++.|++..+.|+.|
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 346999999999999999999999999866 444 45668899999999999999999999999999999
Q ss_pred EEEecc
Q 003036 300 KLEPSH 305 (854)
Q Consensus 300 kV~~a~ 305 (854)
+|+-|+
T Consensus 214 rVerAk 219 (382)
T KOG1548|consen 214 RVERAK 219 (382)
T ss_pred EEehhh
Confidence 998654
No 140
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.53 E-value=0.00011 Score=78.16 Aligned_cols=77 Identities=21% Similarity=0.276 Sum_probs=68.5
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a 304 (854)
.....+||+|++..++.+++..+|+.||.|..|.+ .++.++|+||+|.+.+.++.|++ |||..|.|+.++|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 45568999999999999999999999999975544 55689999999999999999999 9999999999999997
Q ss_pred cCc
Q 003036 305 HLR 307 (854)
Q Consensus 305 ~pk 307 (854)
+-.
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 653
No 141
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.51 E-value=0.00016 Score=84.59 Aligned_cols=171 Identities=12% Similarity=0.032 Sum_probs=122.0
Q ss_pred cCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhc-cCCeEEE---EeCccccceEEEeeCCHHHHHHHHHHhcceecCCc
Q 003036 137 AGEHLNDEHPSRTLLLRKINSNIEDSELKALFEQ-YGDVRTF---YRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSG 212 (854)
Q Consensus 137 ~ge~p~~e~psrtLfVgNLP~~vTEedL~elFsq-fG~I~sv---~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr 212 (854)
.+..+.-......+-+++.+.+.++.|++++|.- +-.-..+ .+.+...|.++|.|....++++|++ -+...+..|
T Consensus 301 ggstpqvv~d~~y~~~~gm~fn~~~nd~rkfF~g~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R 379 (944)
T KOG4307|consen 301 GGSTPQVVSDKYYNNYKGMEFNNDFNDGRKFFPGRNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNR 379 (944)
T ss_pred CCCCCcccchhheeeecccccccccchhhhhcCcccccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhc
Confidence 3344444455667778899999999999999973 3222222 2445558999999999999999985 355555556
Q ss_pred eeeeeecCCC------------C-----------------CC--Cc----ccccccceeeecCCCCCCHHHHhhhhcccC
Q 003036 213 KLDIHYSIPK------------D-----------------NP--SE----KEINQGTLVVFNLDSSVSNDELHHIFGVYG 257 (854)
Q Consensus 213 ~L~V~~a~pk------------~-----------------~~--~~----~~~~~~tLfV~NLp~svTeedLreiFs~fG 257 (854)
.+.|...... . .. .. .......|||..||..+++.++.+.|...-
T Consensus 380 ~~q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~ 459 (944)
T KOG4307|consen 380 PFQTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAA 459 (944)
T ss_pred ceeecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhh
Confidence 6555221100 0 00 00 001234899999999999999999999877
Q ss_pred ceeE-eee----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCch
Q 003036 258 EIKE-IRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 258 ~I~~-Vri----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~ 308 (854)
.|++ |.+ +.+.++.|||+|..++++.+|+.--+.+.++-+.|+|.-...++
T Consensus 460 ~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~ 515 (944)
T KOG4307|consen 460 AVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYA 515 (944)
T ss_pred hhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhhHH
Confidence 7776 666 34456799999999999999998778888888999998765544
No 142
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.51 E-value=0.00012 Score=77.42 Aligned_cols=75 Identities=17% Similarity=0.284 Sum_probs=65.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE-----EEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeec
Q 003036 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRT-----FYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~elFsqfG~I~s-----v~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a 219 (854)
....+||.+.|.-+++++-|.+.|.+|-.... -+.+++++||+||.|.++.++.+|+++|+|+.+..++|++.-+
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 44679999999999999999999999874322 2267999999999999999999999999999999999887544
No 143
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.49 E-value=0.00088 Score=74.19 Aligned_cols=159 Identities=14% Similarity=0.152 Sum_probs=111.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhc-----cCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecC
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQ-----YGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsq-----fG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~ 220 (854)
....|-.++|||..++.+|..+|+- -|.+..+...++..|.+.|.|.|.+.-+.|++. +...+.++.|.|--+.
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYka~ 137 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYKAT 137 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeeccC
Confidence 3456777899999999999999983 344444446678889999999999999999864 5566777777764333
Q ss_pred CCCC---------CC---cccccccceeeecCCCCCCHHHHhhhhccc---C-c---eeEeee-cCCcccEEEEEeCCHH
Q 003036 221 PKDN---------PS---EKEINQGTLVVFNLDSSVSNDELHHIFGVY---G-E---IKEIRE-TPQKIHQKYIEFYDTR 280 (854)
Q Consensus 221 pk~~---------~~---~~~~~~~tLfV~NLp~svTeedLreiFs~f---G-~---I~~Vri-t~~skG~AFVeF~d~e 280 (854)
..+- .. ..+.++-.|..++||+++++.|+.++|.+- + . |.-|+- +++..|-|||.|..++
T Consensus 138 ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee 217 (508)
T KOG1365|consen 138 GEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEE 217 (508)
T ss_pred chhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHH
Confidence 2210 00 011234478889999999999999999632 1 2 222333 5667799999999999
Q ss_pred HHHHHHHHhCCceeCCeEEEEEeccC
Q 003036 281 AAEAALRELNSRYIAGKQIKLEPSHL 306 (854)
Q Consensus 281 ~A~kAl~~LNG~~I~Gk~IkV~~a~p 306 (854)
+|+.|+.+ |...|+-|.|.+-.+..
T Consensus 218 ~aq~aL~k-hrq~iGqRYIElFRSTa 242 (508)
T KOG1365|consen 218 DAQFALRK-HRQNIGQRYIELFRSTA 242 (508)
T ss_pred HHHHHHHH-HHHHHhHHHHHHHHHhH
Confidence 99999985 44555555555544433
No 144
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.48 E-value=0.00097 Score=76.08 Aligned_cols=153 Identities=10% Similarity=0.145 Sum_probs=102.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE-EE----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeee-
Q 003036 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRT-FY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY- 218 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~elFsqfG~I~s-v~----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~- 218 (854)
...-.|-+++||+.|+++||.++|+-.-.|.. |. ..++..|-|||+|++.+.|++|+.. +...|..|-|.|-.
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 35678999999999999999999996554433 21 3567889999999999999999954 33334333333310
Q ss_pred ----------------------------------cCCCCC------------------------C--------Cccc---
Q 003036 219 ----------------------------------SIPKDN------------------------P--------SEKE--- 229 (854)
Q Consensus 219 ----------------------------------a~pk~~------------------------~--------~~~~--- 229 (854)
...+.. . ..++
T Consensus 180 s~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~ 259 (510)
T KOG4211|consen 180 SRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNY 259 (510)
T ss_pred HHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccccccccccccccccc
Confidence 000000 0 0000
Q ss_pred ------------------ccc-cceeeecCCCCCCHHHHhhhhcccCce-eEeee--cCCcccEEEEEeCCHHHHHHHHH
Q 003036 230 ------------------INQ-GTLVVFNLDSSVSNDELHHIFGVYGEI-KEIRE--TPQKIHQKYIEFYDTRAAEAALR 287 (854)
Q Consensus 230 ------------------~~~-~tLfV~NLp~svTeedLreiFs~fG~I-~~Vri--t~~skG~AFVeF~d~e~A~kAl~ 287 (854)
... ..++.++||...++.++..+|+..-.+ ..|.+ +++..|-|+|+|.+.++|..|+.
T Consensus 260 ~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~~v~i~ig~dGr~TGEAdveF~t~edav~Ams 339 (510)
T KOG4211|consen 260 PVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPYRVHIEIGPDGRATGEADVEFATGEDAVGAMG 339 (510)
T ss_pred CCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCceeEEEEeCCCCccCCcceeecccchhhHhhhc
Confidence 011 256778999999999999999975444 22333 67778999999999999999975
Q ss_pred HhCCceeCCeEE
Q 003036 288 ELNSRYIAGKQI 299 (854)
Q Consensus 288 ~LNG~~I~Gk~I 299 (854)
+ ++..+..+-|
T Consensus 340 k-d~anm~hrYV 350 (510)
T KOG4211|consen 340 K-DGANMGHRYV 350 (510)
T ss_pred c-CCcccCccee
Confidence 2 4444444333
No 145
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.42 E-value=0.00011 Score=81.24 Aligned_cols=147 Identities=17% Similarity=0.134 Sum_probs=109.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe--------CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeec
Q 003036 148 RTLLLRKINSNIEDSELKALFEQYGDVRTFYR--------ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (854)
Q Consensus 148 rtLfVgNLP~~vTEedL~elFsqfG~I~sv~~--------tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a 219 (854)
..|-|.||.+.++.++++.||.-.|+|..+.. .......|||.|.|...+..|. .|.++++-++.|.|-..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 48999999999999999999999999988872 1234568999999999998887 57777766666555222
Q ss_pred -CCCCC----------------------------CCcc-----------------------cccccceeeecCCCCCCHH
Q 003036 220 -IPKDN----------------------------PSEK-----------------------EINQGTLVVFNLDSSVSND 247 (854)
Q Consensus 220 -~pk~~----------------------------~~~~-----------------------~~~~~tLfV~NLp~svTee 247 (854)
.+... +... .....+++|.+|+..+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 11100 0000 0022579999999999999
Q ss_pred HHhhhhcccCceeEeee-cCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 003036 248 ELHHIFGVYGEIKEIRE-TPQKIHQKYIEFYDTRAAEAALRELNSRYIAG 296 (854)
Q Consensus 248 dLreiFs~fG~I~~Vri-t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~G 296 (854)
++.+.|..+|+|...++ .+...-+|.|+|........|++ ++|.++.-
T Consensus 167 e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k~ 215 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERKR 215 (479)
T ss_pred hhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhhh
Confidence 99999999999988766 34445678899998888888887 56666653
No 146
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.36 E-value=0.00057 Score=61.41 Aligned_cols=68 Identities=19% Similarity=0.251 Sum_probs=48.2
Q ss_pred cceeeecCCCCCCHH----HHhhhhcccC-ceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 003036 233 GTLVVFNLDSSVSND----ELHHIFGVYG-EIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (854)
Q Consensus 233 ~tLfV~NLp~svTee----dLreiFs~fG-~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~ 305 (854)
..|+|.|||.+.+.. .|++++.-+| .|.+| ..+.|+|.|.+.+.|.+|.+.|+|..+.|.+|.|.|..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 469999999988765 4566777875 45555 25789999999999999999999999999999999974
No 147
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.33 E-value=0.00023 Score=75.73 Aligned_cols=78 Identities=12% Similarity=0.215 Sum_probs=68.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeee
Q 003036 142 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (854)
Q Consensus 142 ~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V 216 (854)
..+...+.+||+|+...++.+++...|+.||.|..+. ..+..|||+||+|.+.+.+++|+. |++..|.|+.+.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 3556778999999999999999999999999996444 455689999999999999999997 9999999999998
Q ss_pred eecC
Q 003036 217 HYSI 220 (854)
Q Consensus 217 ~~a~ 220 (854)
.+..
T Consensus 175 t~~r 178 (231)
T KOG4209|consen 175 TLKR 178 (231)
T ss_pred eeee
Confidence 7754
No 148
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.26 E-value=0.00045 Score=64.88 Aligned_cols=77 Identities=23% Similarity=0.343 Sum_probs=49.8
Q ss_pred ceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhC-----CceeCCeEEEEEeccCch
Q 003036 234 TLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELN-----SRYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 234 tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LN-----G~~I~Gk~IkV~~a~pk~ 308 (854)
.|.|.+++..++.++|++.|+.||.|..|.+.. ....|+|.|.+.++|++|+..+. +..|.+..++++.-.-.+
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~-G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vLeGee 81 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR-GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVLEGEE 81 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--T-T-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE---HHH
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecC-CCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEECCCHH
Confidence 578889999999999999999999999999843 45589999999999999998874 346788888888766655
Q ss_pred hhh
Q 003036 309 LRK 311 (854)
Q Consensus 309 ~Rr 311 (854)
+++
T Consensus 82 E~~ 84 (105)
T PF08777_consen 82 EEE 84 (105)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 149
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.21 E-value=0.00016 Score=74.83 Aligned_cols=76 Identities=18% Similarity=0.151 Sum_probs=67.1
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeeec----CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET----PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit----~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~p 306 (854)
..++|||.|+...++++-|.++|-+.|.|..|.|. .+.| ||||.|.+.-...-|++.|||..+.+..++|.+-..
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 34699999999999999999999999999998882 2234 999999999999999999999999999999988554
Q ss_pred c
Q 003036 307 R 307 (854)
Q Consensus 307 k 307 (854)
.
T Consensus 87 ~ 87 (267)
T KOG4454|consen 87 N 87 (267)
T ss_pred C
Confidence 3
No 150
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.75 E-value=0.00033 Score=84.04 Aligned_cols=154 Identities=14% Similarity=0.141 Sum_probs=117.5
Q ss_pred CcEEEEcCCCCCCCHH-HHHHHhhccCCeEEEEeCc----cc-cceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecC
Q 003036 147 SRTLLLRKINSNIEDS-ELKALFEQYGDVRTFYRAS----KH-CGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (854)
Q Consensus 147 srtLfVgNLP~~vTEe-dL~elFsqfG~I~sv~~tg----ks-KGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~ 220 (854)
.+...+.++.+...+. ..++.|+.+|.|..|+... .+ ..+.++.+....+++.|. ...+.-+.++.+.|..+.
T Consensus 571 ~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat-~pa~~~~a~~~~av~~ad 649 (881)
T KOG0128|consen 571 RREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESAT-VPAGGALANRSAAVGLAD 649 (881)
T ss_pred hhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcc-cccccccCCccccCCCCC
Confidence 4677888888887776 5678899999999998322 12 237889999998898887 467777888888887776
Q ss_pred CCCCCCccc------ccccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHh
Q 003036 221 PKDNPSEKE------INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALREL 289 (854)
Q Consensus 221 pk~~~~~~~------~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~L 289 (854)
++....... ....++||.||+..+.+++|...|..+|.+..+++ .++-+|+|+|+|..+++|.+|+...
T Consensus 650 ~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~ 729 (881)
T KOG0128|consen 650 AEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFR 729 (881)
T ss_pred chhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhh
Confidence 654322111 12348999999999999999999999999887655 4667899999999999999999876
Q ss_pred CCceeCCeEEEE
Q 003036 290 NSRYIAGKQIKL 301 (854)
Q Consensus 290 NG~~I~Gk~IkV 301 (854)
++..++...+.|
T Consensus 730 d~~~~gK~~v~i 741 (881)
T KOG0128|consen 730 DSCFFGKISVAI 741 (881)
T ss_pred hhhhhhhhhhhe
Confidence 666665333333
No 151
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.73 E-value=0.0022 Score=70.10 Aligned_cols=75 Identities=21% Similarity=0.338 Sum_probs=62.0
Q ss_pred cEEEEcCCCCCCCHHHHH------HHhhccCCeEEEEeCccc------cc--eEEEeeCCHHHHHHHHHHhcceecCCce
Q 003036 148 RTLLLRKINSNIEDSELK------ALFEQYGDVRTFYRASKH------CG--FVTISYYDIRAARNAMKSLQNKLTRSGK 213 (854)
Q Consensus 148 rtLfVgNLP~~vTEedL~------elFsqfG~I~sv~~tgks------KG--fAFVeF~d~edA~kAl~~Lng~~L~Gr~ 213 (854)
.-+||-+||+.+-.+++. ++|.+||+|..|.+..+- .+ -.||.|.+.++|.+||.+.+|..++||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 578999999998887733 799999999998843221 12 2499999999999999999999999999
Q ss_pred eeeeecCCC
Q 003036 214 LDIHYSIPK 222 (854)
Q Consensus 214 L~V~~a~pk 222 (854)
|+..|...|
T Consensus 195 lkatYGTTK 203 (480)
T COG5175 195 LKATYGTTK 203 (480)
T ss_pred EeeecCchH
Confidence 999987543
No 152
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.57 E-value=0.003 Score=67.10 Aligned_cols=87 Identities=23% Similarity=0.376 Sum_probs=74.2
Q ss_pred HHHHHHHHHhcceecCCceeeeeecCCCCCCCcccccccceeeecCCCCCCHHHHhhhhcccCceeE----eeecCCccc
Q 003036 195 RAARNAMKSLQNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKE----IRETPQKIH 270 (854)
Q Consensus 195 edA~kAl~~Lng~~L~Gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~----Vrit~~skG 270 (854)
.-|+.|..+|++....++.++|.|+.. ..|||.||...++.|.|.+.|+.||.|.. +...++..+
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~-----------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~ 73 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH-----------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTR 73 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc-----------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccc
Confidence 347788889999999999999999853 46999999999999999999999999865 333556677
Q ss_pred EEEEEeCCHHHHHHHHHHhCCc
Q 003036 271 QKYIEFYDTRAAEAALRELNSR 292 (854)
Q Consensus 271 ~AFVeF~d~e~A~kAl~~LNG~ 292 (854)
-++|+|...-.|.+|++.+.-.
T Consensus 74 eg~v~~~~k~~a~~a~rr~~~~ 95 (275)
T KOG0115|consen 74 EGIVEFAKKPNARKAARRCREG 95 (275)
T ss_pred cchhhhhcchhHHHHHHHhccC
Confidence 8999999999999999987533
No 153
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.55 E-value=0.0026 Score=71.57 Aligned_cols=76 Identities=30% Similarity=0.346 Sum_probs=60.0
Q ss_pred ccccccceeeecCCCCCCHHHHhhhhcccCceeEeeec-C---------C--------cccEEEEEeCCHHHHHHHHHHh
Q 003036 228 KEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET-P---------Q--------KIHQKYIEFYDTRAAEAALREL 289 (854)
Q Consensus 228 ~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit-~---------~--------skG~AFVeF~d~e~A~kAl~~L 289 (854)
.....++|++.|||.+-.-+.|.+||+.+|.|+.|+|- + . .+-+|+|+|+..+.|.+|.+.|
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 34567899999999999999999999999999999981 1 0 1458999999999999999988
Q ss_pred CCceeCCeEEEEEe
Q 003036 290 NSRYIAGKQIKLEP 303 (854)
Q Consensus 290 NG~~I~Gk~IkV~~ 303 (854)
+-..-.-.-++|.+
T Consensus 307 ~~e~~wr~glkvkL 320 (484)
T KOG1855|consen 307 NPEQNWRMGLKVKL 320 (484)
T ss_pred chhhhhhhcchhhh
Confidence 76544433344433
No 154
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.48 E-value=0.0088 Score=65.52 Aligned_cols=81 Identities=22% Similarity=0.418 Sum_probs=65.9
Q ss_pred cceeeecCCCCCCHHHH------hhhhcccCceeEeeecCCc------cc-E-EEEEeCCHHHHHHHHHHhCCceeCCeE
Q 003036 233 GTLVVFNLDSSVSNDEL------HHIFGVYGEIKEIRETPQK------IH-Q-KYIEFYDTRAAEAALRELNSRYIAGKQ 298 (854)
Q Consensus 233 ~tLfV~NLp~svTeedL------reiFs~fG~I~~Vrit~~s------kG-~-AFVeF~d~e~A~kAl~~LNG~~I~Gk~ 298 (854)
+-+||-+|++.+-.|++ .++|.+||.|+.|.+..+- .+ + .||+|.+.++|.+||.+.+|..++||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 56899999999887773 3689999999998873221 12 2 399999999999999999999999999
Q ss_pred EEEEeccCchhhhHh
Q 003036 299 IKLEPSHLRGLRKCL 313 (854)
Q Consensus 299 IkV~~a~pk~~Rr~l 313 (854)
|+..|...|-.-..+
T Consensus 195 lkatYGTTKYCtsYL 209 (480)
T COG5175 195 LKATYGTTKYCTSYL 209 (480)
T ss_pred EeeecCchHHHHHHH
Confidence 999999876644444
No 155
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=96.36 E-value=0.0019 Score=72.14 Aligned_cols=75 Identities=19% Similarity=0.418 Sum_probs=62.7
Q ss_pred CcceeEEeecCCCCCCHHHHHHHHHhhCCCcceeEEec-ccccccce-eEEEEEecCCccchHHHHHHhcCceecCCC
Q 003036 681 DNRTTLMIKNIPNKYTSKMLLAAIDERHKGTYDFIYLP-IDFKNKCN-VGYAFINMTDPSQIVPFYQSFNGKKWEKFN 756 (854)
Q Consensus 681 d~rTTvMirNIPnk~t~~~L~~~id~~~~g~yDf~Ylp-~Df~~~~N-~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~ 756 (854)
+....|.||++|+++|...|+..||- +...+.|-|+- -|+....+ .+.|||||..+.++..|...|+|+.+-.-.
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p-~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~K 81 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINP-FPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDNK 81 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCC-CccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecCC
Confidence 34568999999999999999999999 88888887654 66654443 667999999999999999999999986533
No 156
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.34 E-value=0.0033 Score=69.64 Aligned_cols=79 Identities=16% Similarity=0.217 Sum_probs=69.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-------------eCccccceEEEeeCCHHHHHHHHHHhcceecC
Q 003036 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-------------RASKHCGFVTISYYDIRAARNAMKSLQNKLTR 210 (854)
Q Consensus 144 e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~-------------~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~ 210 (854)
....-+|||-+||..+++++|.++|.++|.|..=+ .|.+.|+-|.|.|.|...|+.|+.-++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 44457999999999999999999999999885432 46789999999999999999999999999999
Q ss_pred CceeeeeecCCC
Q 003036 211 SGKLDIHYSIPK 222 (854)
Q Consensus 211 Gr~L~V~~a~pk 222 (854)
+.+|+|.++..+
T Consensus 143 gn~ikvs~a~~r 154 (351)
T KOG1995|consen 143 GNTIKVSLAERR 154 (351)
T ss_pred CCCchhhhhhhc
Confidence 999999877644
No 157
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.26 E-value=0.011 Score=55.63 Aligned_cols=59 Identities=19% Similarity=0.239 Sum_probs=39.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcce
Q 003036 148 RTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNK 207 (854)
Q Consensus 148 rtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~ 207 (854)
..|.|.+++..++.++|+++|++||.|..|.. .+...-|+|.|.+.++|++|+..+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~-~~G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDF-SRGDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE---TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEe-cCCCCEEEEEECCcchHHHHHHHHHhc
Confidence 46889999999999999999999999999885 344558999999999999999887644
No 158
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.25 E-value=0.0033 Score=69.60 Aligned_cols=77 Identities=26% Similarity=0.345 Sum_probs=68.5
Q ss_pred ccceeeecCCCCCCHHHHhhhhcccCceeE--------ee-----ecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 003036 232 QGTLVVFNLDSSVSNDELHHIFGVYGEIKE--------IR-----ETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQ 298 (854)
Q Consensus 232 ~~tLfV~NLp~svTeedLreiFs~fG~I~~--------Vr-----it~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~ 298 (854)
..+|||-+||..+++.+|.++|.++|.|+. |. ++...|+-|.|.|.+...|+.|+.-++++.+.+.+
T Consensus 66 ~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ 145 (351)
T KOG1995|consen 66 NETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNT 145 (351)
T ss_pred cccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCC
Confidence 458999999999999999999999999865 22 26678899999999999999999999999999999
Q ss_pred EEEEeccCch
Q 003036 299 IKLEPSHLRG 308 (854)
Q Consensus 299 IkV~~a~pk~ 308 (854)
|+|.++..+.
T Consensus 146 ikvs~a~~r~ 155 (351)
T KOG1995|consen 146 IKVSLAERRT 155 (351)
T ss_pred chhhhhhhcc
Confidence 9999887544
No 159
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.24 E-value=0.0045 Score=69.74 Aligned_cols=76 Identities=21% Similarity=0.313 Sum_probs=60.3
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCcc-------------------ccceEEEeeCCHHHHHHH
Q 003036 140 HLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASK-------------------HCGFVTISYYDIRAARNA 200 (854)
Q Consensus 140 ~p~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgk-------------------sKGfAFVeF~d~edA~kA 200 (854)
.+..+-++|+|.+-|||.+-.-+-|.++|..+|.|..|++ ++ .+-+|+|+|...+.|.+|
T Consensus 224 ~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRI-ckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA 302 (484)
T KOG1855|consen 224 FDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRI-CKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKA 302 (484)
T ss_pred ccccccccceEEEecCCcchHHHHHHHHhhcccceeeeee-cCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHH
Confidence 3345568999999999999999999999999999999983 11 256899999999999999
Q ss_pred HHHhcceecCCceeee
Q 003036 201 MKSLQNKLTRSGKLDI 216 (854)
Q Consensus 201 l~~Lng~~L~Gr~L~V 216 (854)
.+.|+...-...-|+|
T Consensus 303 ~e~~~~e~~wr~glkv 318 (484)
T KOG1855|consen 303 RELLNPEQNWRMGLKV 318 (484)
T ss_pred HHhhchhhhhhhcchh
Confidence 9887654433333333
No 160
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.22 E-value=0.0096 Score=49.16 Aligned_cols=52 Identities=12% Similarity=0.358 Sum_probs=43.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHH
Q 003036 148 RTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAM 201 (854)
Q Consensus 148 rtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl 201 (854)
+.|-|.+.+++..+. +.+.|..||+|..+..+ ....+.+|.|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 678899999776654 55588899999999874 55779999999999999985
No 161
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.15 E-value=0.0079 Score=49.66 Aligned_cols=52 Identities=23% Similarity=0.392 Sum_probs=43.0
Q ss_pred cceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHH
Q 003036 233 GTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAAL 286 (854)
Q Consensus 233 ~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl 286 (854)
+.|.|.+.+++..+ ++...|..||+|..+.++ ......+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 45788888877664 455588899999999984 55779999999999999985
No 162
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.81 E-value=0.0075 Score=64.19 Aligned_cols=68 Identities=19% Similarity=0.300 Sum_probs=58.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeC-------------ccccc----eEEEeeCCHHHHHHHHHHhccee
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRA-------------SKHCG----FVTISYYDIRAARNAMKSLQNKL 208 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~t-------------gksKG----fAFVeF~d~edA~kAl~~Lng~~ 208 (854)
.+-.||+++||+.+.-.-|+++|++||.|-.|+.. +..+. -|+|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 56789999999999999999999999999999821 12222 28899999999999999999999
Q ss_pred cCCce
Q 003036 209 TRSGK 213 (854)
Q Consensus 209 L~Gr~ 213 (854)
|.|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 163
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.81 E-value=0.02 Score=53.45 Aligned_cols=72 Identities=21% Similarity=0.330 Sum_probs=52.6
Q ss_pred ccceeeecCCCCCCHHHHhhhhcccCceeEee------------ecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 003036 232 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIR------------ETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQI 299 (854)
Q Consensus 232 ~~tLfV~NLp~svTeedLreiFs~fG~I~~Vr------------it~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~I 299 (854)
...|.|.+.|+. ....+.+.|++||+|.+.. -......+..|+|.++.+|.+||+ -||..|.|..+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 356889999988 5567888999999998875 123456799999999999999998 59999998644
Q ss_pred -EEEecc
Q 003036 300 -KLEPSH 305 (854)
Q Consensus 300 -kV~~a~ 305 (854)
-|.|.+
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 466663
No 164
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.63 E-value=0.02 Score=67.84 Aligned_cols=70 Identities=19% Similarity=0.223 Sum_probs=61.5
Q ss_pred ceeeecCCCCCCHHHHhhhhcccCceeE-eee----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003036 234 TLVVFNLDSSVSNDELHHIFGVYGEIKE-IRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 303 (854)
Q Consensus 234 tLfV~NLp~svTeedLreiFs~fG~I~~-Vri----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~ 303 (854)
.|-+.|+|++++-+||.++|..|-.+.. |++ .+...|-|.|-|++.++|.+|...|+++.|..++|+|..
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 7889999999999999999999976533 333 566779999999999999999999999999999999864
No 165
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=95.61 E-value=0.0098 Score=65.36 Aligned_cols=78 Identities=17% Similarity=0.352 Sum_probs=68.9
Q ss_pred CCcEEE-EcCCCCCCCHHHHHHHhhccCCeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeec
Q 003036 146 PSRTLL-LRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (854)
Q Consensus 146 psrtLf-VgNLP~~vTEedL~elFsqfG~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a 219 (854)
+..++| |++|+.++++++|+..|..+|.|..++ .++..+|||+|.|.....+..++.. +...+.++++.+.+.
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 455666 999999999999999999999999998 4678999999999999999999977 888899999999987
Q ss_pred CCCCC
Q 003036 220 IPKDN 224 (854)
Q Consensus 220 ~pk~~ 224 (854)
.+...
T Consensus 262 ~~~~~ 266 (285)
T KOG4210|consen 262 EPRPK 266 (285)
T ss_pred CCCcc
Confidence 76543
No 166
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.57 E-value=0.021 Score=66.75 Aligned_cols=81 Identities=17% Similarity=0.198 Sum_probs=68.7
Q ss_pred ccccceeeecCCCCCCHHHHhhhhc-ccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCcee---CCeEEEEEecc
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFG-VYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYI---AGKQIKLEPSH 305 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs-~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I---~Gk~IkV~~a~ 305 (854)
..++.|+|.||-..+|.-+|+.++. ..|.|.+..| .+-|.+|||.|.+.++|...+.+|||... ++|.|.+.|..
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm-DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~ 520 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM-DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVR 520 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHH-HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecc
Confidence 3567999999999999999999999 5566777755 55678999999999999999999999764 46999999998
Q ss_pred Cchhhh
Q 003036 306 LRGLRK 311 (854)
Q Consensus 306 pk~~Rr 311 (854)
..+..+
T Consensus 521 ~deld~ 526 (718)
T KOG2416|consen 521 ADELDK 526 (718)
T ss_pred hhHHHH
Confidence 877554
No 167
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.45 E-value=0.0063 Score=64.72 Aligned_cols=68 Identities=25% Similarity=0.451 Sum_probs=58.3
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeeecCC-------------ccc----EEEEEeCCHHHHHHHHHHhCCce
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQ-------------KIH----QKYIEFYDTRAAEAALRELNSRY 293 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~-------------skG----~AFVeF~d~e~A~kAl~~LNG~~ 293 (854)
..+.||+++||+.+....|+++|+.||+|-.|.+.+. .+. -|.|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4579999999999999999999999999998877321 111 27899999999999999999999
Q ss_pred eCCeE
Q 003036 294 IAGKQ 298 (854)
Q Consensus 294 I~Gk~ 298 (854)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99864
No 168
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.37 E-value=0.051 Score=66.26 Aligned_cols=80 Identities=18% Similarity=0.255 Sum_probs=70.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCC--ceeeeeecC
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRS--GKLDIHYSI 220 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~G--r~L~V~~a~ 220 (854)
...+++.+||++|+..+....|...|..||.|+.|.. .+..-||+|.|++...|+.|++.|.|..|.+ +.++|.|+.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy-~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY-RHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeec-ccCCcceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 4567899999999999999999999999999999875 4566799999999999999999999999975 678888886
Q ss_pred CCC
Q 003036 221 PKD 223 (854)
Q Consensus 221 pk~ 223 (854)
+..
T Consensus 530 ~~~ 532 (975)
T KOG0112|consen 530 PPG 532 (975)
T ss_pred CCC
Confidence 553
No 169
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.26 E-value=0.032 Score=60.36 Aligned_cols=64 Identities=23% Similarity=0.399 Sum_probs=52.5
Q ss_pred HHHHhhhhcccCceeEeee--cC----CcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCchh
Q 003036 246 NDELHHIFGVYGEIKEIRE--TP----QKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGL 309 (854)
Q Consensus 246 eedLreiFs~fG~I~~Vri--t~----~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~~ 309 (854)
++++++.+++||.|..|.+ .+ +..--.||+|..+++|.+|+-.|||..|+|+.++..|..-..-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ekf 369 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLEKF 369 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHHhh
Confidence 5688899999999988665 11 1123579999999999999999999999999999998766553
No 170
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.12 E-value=0.025 Score=63.77 Aligned_cols=76 Identities=22% Similarity=0.299 Sum_probs=63.2
Q ss_pred cceeeecCCCCCCHHHHhhhhccc--CceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCc-eeCCeEEEEEeccCchh
Q 003036 233 GTLVVFNLDSSVSNDELHHIFGVY--GEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSR-YIAGKQIKLEPSHLRGL 309 (854)
Q Consensus 233 ~tLfV~NLp~svTeedLreiFs~f--G~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~-~I~Gk~IkV~~a~pk~~ 309 (854)
..+|++||.+.++..+|..+|... +.-..+.+ ..+|+||.+.+...|.+|++.++|+ ++.|+++.|+++-++.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~---k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV---KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee---ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 468999999999999999999754 11111222 5689999999999999999999996 68999999999999886
Q ss_pred hh
Q 003036 310 RK 311 (854)
Q Consensus 310 Rr 311 (854)
|.
T Consensus 79 rs 80 (584)
T KOG2193|consen 79 RS 80 (584)
T ss_pred Hh
Confidence 64
No 171
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.11 E-value=0.0092 Score=63.62 Aligned_cols=65 Identities=31% Similarity=0.546 Sum_probs=53.2
Q ss_pred HHHhhhhc-ccCceeEeee----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCchhhh
Q 003036 247 DELHHIFG-VYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGLRK 311 (854)
Q Consensus 247 edLreiFs-~fG~I~~Vri----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~~Rr 311 (854)
++|...|+ +||+|+++.+ -.+-.|-++|+|...++|++|+..||+..+.|++|..++.--..-+.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~re 152 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFRE 152 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchhh
Confidence 45555555 9999999765 23346889999999999999999999999999999999986655554
No 172
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.03 E-value=0.12 Score=49.16 Aligned_cols=85 Identities=20% Similarity=0.326 Sum_probs=66.6
Q ss_pred cceeEEeecCCCCCCHHHHHHHHHhhCCCcceeEEecccccccceeEEEEEecCCccchHHHHHHhcCceecCCCCccEE
Q 003036 682 NRTTLMIKNIPNKYTSKMLLAAIDERHKGTYDFIYLPIDFKNKCNVGYAFINMTDPSQIVPFYQSFNGKKWEKFNSEKVA 761 (854)
Q Consensus 682 ~rTTvMirNIPnk~t~~~L~~~id~~~~g~yDf~Ylp~Df~~~~N~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~s~K~~ 761 (854)
.+|+|-+=-+|+.++..+++..+-+.+.....-+.+--|.. -|.-=+-|-|.+++++.+||+.|||++++..-. .+|
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEp-E~C 87 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNSLEP-ETC 87 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCCCCC-cee
Confidence 45666666899999988777677777777777666666643 466679999999999999999999999987765 459
Q ss_pred EEEe-eccc
Q 003036 762 SLAY-ARIQ 769 (854)
Q Consensus 762 ~v~y-A~iQ 769 (854)
.|.| .+||
T Consensus 88 hvvfV~~Ve 96 (110)
T PF07576_consen 88 HVVFVKSVE 96 (110)
T ss_pred EEEEEEEEE
Confidence 9999 4554
No 173
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.89 E-value=0.069 Score=49.96 Aligned_cols=72 Identities=8% Similarity=0.207 Sum_probs=52.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE------------eCccccceEEEeeCCHHHHHHHHHHhcceecCCce
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFY------------RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGK 213 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~------------~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~ 213 (854)
..+-|.|-+.|+. ....|.+.|++||.|.+.. .......+..|.|.++.+|++||. .||..+.|.-
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 3467899999987 6678889999999998886 223456789999999999999994 6999998864
Q ss_pred -eeeeec
Q 003036 214 -LDIHYS 219 (854)
Q Consensus 214 -L~V~~a 219 (854)
+-|.+.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 446665
No 174
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.69 E-value=0.059 Score=62.79 Aligned_cols=71 Identities=18% Similarity=0.275 Sum_probs=55.8
Q ss_pred CCcEEEEcCCCCCCC--H----HHHHHHhhccCCeEEEE----eCccccceEEEeeCCHHHHHHHHHHhcceecCC-cee
Q 003036 146 PSRTLLLRKINSNIE--D----SELKALFEQYGDVRTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRS-GKL 214 (854)
Q Consensus 146 psrtLfVgNLP~~vT--E----edL~elFsqfG~I~sv~----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~G-r~L 214 (854)
-...|+|-|+|---. . .-|.++|+++|+|..++ ..+..+||.|++|.+.++|+.|++.|+|+.|.- ..+
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 346899999984322 2 23458999999999988 357799999999999999999999999998763 344
Q ss_pred ee
Q 003036 215 DI 216 (854)
Q Consensus 215 ~V 216 (854)
.|
T Consensus 137 ~v 138 (698)
T KOG2314|consen 137 FV 138 (698)
T ss_pred Ee
Confidence 44
No 175
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.51 E-value=0.11 Score=59.39 Aligned_cols=81 Identities=28% Similarity=0.364 Sum_probs=71.1
Q ss_pred ceeEEeecCCCCCCHHHHHHHHHhhCCCcceeEEecccccccceeEEEEEecCCccchHHHHHHhcCceecCCCCccEEE
Q 003036 683 RTTLMIKNIPNKYTSKMLLAAIDERHKGTYDFIYLPIDFKNKCNVGYAFINMTDPSQIVPFYQSFNGKKWEKFNSEKVAS 762 (854)
Q Consensus 683 rTTvMirNIPnk~t~~~L~~~id~~~~g~yDf~Ylp~Df~~~~N~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~s~K~~~ 762 (854)
-|+|-|=-+|+.+|..+|+..+...++-=-|+-.++ ..--|.--+-|-|.+..++..||+.|||+.+...-.+ +|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivR---d~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e-~Ch 149 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVR---DGMPNRYMVLIKFRDQADADTFYEEFNGKQFNSLEPE-VCH 149 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEee---cCCCceEEEEEEeccchhHHHHHHHcCCCcCCCCCcc-cee
Confidence 788899999999999999999998888777888888 3445666699999999999999999999999887777 999
Q ss_pred EEeec
Q 003036 763 LAYAR 767 (854)
Q Consensus 763 v~yA~ 767 (854)
|-|+.
T Consensus 150 ll~V~ 154 (493)
T KOG0804|consen 150 LLYVD 154 (493)
T ss_pred EEEEE
Confidence 99965
No 176
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=94.42 E-value=0.036 Score=61.13 Aligned_cols=70 Identities=11% Similarity=0.153 Sum_probs=59.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccC--CeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeee
Q 003036 147 SRTLLLRKINSNIEDSELKALFEQYG--DVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (854)
Q Consensus 147 srtLfVgNLP~~vTEedL~elFsqfG--~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V 216 (854)
.-.+||+||-|.+|++||.+.+...| .+.+++ ..+.+||||+|...+..+.++.|+.|-.+.|.|..-.|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 35799999999999999999888766 344443 67899999999999999999999999999999876444
No 177
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.37 E-value=0.097 Score=52.01 Aligned_cols=76 Identities=29% Similarity=0.377 Sum_probs=52.8
Q ss_pred cccceeeecCCC-----CCCH----HHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 003036 231 NQGTLVVFNLDS-----SVSN----DELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKL 301 (854)
Q Consensus 231 ~~~tLfV~NLp~-----svTe----edLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV 301 (854)
+.+||.|.=+.+ ..-. .+|.+.|..||+|.-||+.. +.-.|+|.+-+.|.+|+. |+|..|.|+.|+|
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~---~~mwVTF~dg~sALaals-~dg~~v~g~~l~i 101 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG---DTMWVTFRDGQSALAALS-LDGIQVNGRTLKI 101 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET---TCEEEEESSCHHHHHHHH-GCCSEETTEEEEE
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC---CeEEEEECccHHHHHHHc-cCCcEECCEEEEE
Confidence 445666665541 1222 37788899999999898844 478999999999999987 9999999999999
Q ss_pred EeccCchhh
Q 003036 302 EPSHLRGLR 310 (854)
Q Consensus 302 ~~a~pk~~R 310 (854)
.+..|.-.+
T Consensus 102 ~LKtpdW~~ 110 (146)
T PF08952_consen 102 RLKTPDWLK 110 (146)
T ss_dssp EE-------
T ss_pred EeCCccHHH
Confidence 998886643
No 178
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=93.90 E-value=0.068 Score=62.30 Aligned_cols=72 Identities=17% Similarity=0.212 Sum_probs=55.7
Q ss_pred ccceeeecCCCC--CCH----HHHhhhhcccCceeEeee----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCC-eEEE
Q 003036 232 QGTLVVFNLDSS--VSN----DELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAG-KQIK 300 (854)
Q Consensus 232 ~~tLfV~NLp~s--vTe----edLreiFs~fG~I~~Vri----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~G-k~Ik 300 (854)
...|+|.|+|.- ..- .-|.++|+++|+|..+.+ .+..+||.|++|.+..+|+.|++.|||+.|+- ++..
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 357888888852 222 345678999999988665 35578999999999999999999999998864 5555
Q ss_pred EEe
Q 003036 301 LEP 303 (854)
Q Consensus 301 V~~ 303 (854)
|..
T Consensus 138 v~~ 140 (698)
T KOG2314|consen 138 VRL 140 (698)
T ss_pred eeh
Confidence 543
No 179
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=93.72 E-value=0.053 Score=63.47 Aligned_cols=78 Identities=21% Similarity=0.282 Sum_probs=64.6
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhh-ccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceec---CCceeee
Q 003036 141 LNDEHPSRTLLLRKINSNIEDSELKALFE-QYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLT---RSGKLDI 216 (854)
Q Consensus 141 p~~e~psrtLfVgNLP~~vTEedL~elFs-qfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L---~Gr~L~V 216 (854)
|....++..|+|.||-.-+|.-+|+.++. .+|.|...++ .+-|..|||.|.+.++|.+...+|+|..+ ..+.|.+
T Consensus 438 PsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm-DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 438 PSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM-DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHH-HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 44567789999999999999999999999 5667777654 56677899999999999999999999876 3566666
Q ss_pred eec
Q 003036 217 HYS 219 (854)
Q Consensus 217 ~~a 219 (854)
.|.
T Consensus 517 df~ 519 (718)
T KOG2416|consen 517 DFV 519 (718)
T ss_pred eec
Confidence 664
No 180
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=93.66 E-value=0.036 Score=59.21 Aligned_cols=57 Identities=18% Similarity=0.331 Sum_probs=47.1
Q ss_pred HHHHHhh-ccCCeEEEEe----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeec
Q 003036 163 ELKALFE-QYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (854)
Q Consensus 163 dL~elFs-qfG~I~sv~~----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a 219 (854)
+|...|+ +||+|+.+.+ ...-.|-+||.|..+++|++|+..||+..+.|++|...+.
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 3444444 9999998862 2335788999999999999999999999999999998875
No 181
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.45 E-value=0.3 Score=48.31 Aligned_cols=77 Identities=17% Similarity=0.305 Sum_probs=60.7
Q ss_pred CCCCCCCcEEEEcCCCCCCCH-HHHH---HHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeee
Q 003036 141 LNDEHPSRTLLLRKINSNIED-SELK---ALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (854)
Q Consensus 141 p~~e~psrtLfVgNLP~~vTE-edL~---elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V 216 (854)
...+.|-.||.|+-|..++.. +||+ ..++.||+|.+|...| +-.|.|.|+|..+|-+|+.+++. ...|..+++
T Consensus 80 ~~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qC 156 (166)
T PF15023_consen 80 NTKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG--RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQC 156 (166)
T ss_pred cCCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC--CceEEEEehhhHHHHHHHHhhcC-CCCCceEEe
Confidence 345778899999988877654 4444 5677999999998644 45799999999999999999886 667788888
Q ss_pred eecC
Q 003036 217 HYSI 220 (854)
Q Consensus 217 ~~a~ 220 (854)
.|-.
T Consensus 157 sWqq 160 (166)
T PF15023_consen 157 SWQQ 160 (166)
T ss_pred eccc
Confidence 7743
No 182
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=92.59 E-value=0.24 Score=57.59 Aligned_cols=62 Identities=18% Similarity=0.255 Sum_probs=53.5
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhh-ccCCeEEEE--e---CccccceEEEeeCCHHHHHHHHHH
Q 003036 142 NDEHPSRTLLLRKINSNIEDSELKALFE-QYGDVRTFY--R---ASKHCGFVTISYYDIRAARNAMKS 203 (854)
Q Consensus 142 ~~e~psrtLfVgNLP~~vTEedL~elFs-qfG~I~sv~--~---tgksKGfAFVeF~d~edA~kAl~~ 203 (854)
..-.|.+||||++||.-++.++|..+|+ -||.|..+- + -+-.||-|=|.|.+..+-.+||.+
T Consensus 365 q~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 365 QPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 3446789999999999999999999999 799997765 2 245799999999999999999964
No 183
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=92.56 E-value=0.31 Score=48.56 Aligned_cols=74 Identities=26% Similarity=0.333 Sum_probs=52.9
Q ss_pred CCCCcEEEEcCCC------CCCCH---HHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCcee
Q 003036 144 EHPSRTLLLRKIN------SNIED---SELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKL 214 (854)
Q Consensus 144 e~psrtLfVgNLP------~~vTE---edL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L 214 (854)
.+|..||.|.=+. ....+ ++|.+.|..||+|.-++. -.+.-+|+|.+-+.|.+|+ .++|..+.|+.|
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRf---v~~~mwVTF~dg~sALaal-s~dg~~v~g~~l 99 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRF---VGDTMWVTFRDGQSALAAL-SLDGIQVNGRTL 99 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEE---ETTCEEEEESSCHHHHHHH-HGCCSEETTEEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEE---eCCeEEEEECccHHHHHHH-ccCCcEECCEEE
Confidence 3567788888766 12332 367788999999887764 2357899999999999999 589999999999
Q ss_pred eeeecCC
Q 003036 215 DIHYSIP 221 (854)
Q Consensus 215 ~V~~a~p 221 (854)
+|....|
T Consensus 100 ~i~LKtp 106 (146)
T PF08952_consen 100 KIRLKTP 106 (146)
T ss_dssp EEEE---
T ss_pred EEEeCCc
Confidence 9987554
No 184
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=92.35 E-value=0.28 Score=55.21 Aligned_cols=72 Identities=25% Similarity=0.508 Sum_probs=58.4
Q ss_pred cceeeecCCCCCCHHHHhhhhcccCceeEeeecCC--------cccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 003036 233 GTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQ--------KIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (854)
Q Consensus 233 ~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~--------skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a 304 (854)
+.|.|.||.+.++.++++.+|.-.|+|.++++.+. ....|||.|.|...+..|.. |..+.+-++.|.|-.+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 47999999999999999999999999999887442 24589999999999988854 6667666766666554
Q ss_pred c
Q 003036 305 H 305 (854)
Q Consensus 305 ~ 305 (854)
-
T Consensus 87 ~ 87 (479)
T KOG4676|consen 87 G 87 (479)
T ss_pred C
Confidence 3
No 185
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=91.40 E-value=0.48 Score=46.98 Aligned_cols=74 Identities=19% Similarity=0.214 Sum_probs=56.5
Q ss_pred cccccceeeecCCCCC----CHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 003036 229 EINQGTLVVFNLDSSV----SNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (854)
Q Consensus 229 ~~~~~tLfV~NLp~sv----TeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a 304 (854)
+.+-.+|+|.=|...+ +-..+.+.++.||.|.+|..- .+..|.|.|.|..+|-+|+.++.. ..-|..+++.|.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c--GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC--GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec--CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 3455688886555543 334455567799999999864 466899999999999999999876 667888888885
Q ss_pred c
Q 003036 305 H 305 (854)
Q Consensus 305 ~ 305 (854)
.
T Consensus 160 q 160 (166)
T PF15023_consen 160 Q 160 (166)
T ss_pred c
Confidence 4
No 186
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=90.62 E-value=0.36 Score=49.98 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=44.9
Q ss_pred CHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhC--CceeCCeEEEEEeccCch
Q 003036 245 SNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELN--SRYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 245 TeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LN--G~~I~Gk~IkV~~a~pk~ 308 (854)
..+.|+++|..|+.+..+..-. +=+-..|.|.+.++|.+|...|+ +..+.|+.++|-|+.+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~-sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK-SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET-TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcC-CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 4578999999999887765422 23458899999999999999999 999999999999986543
No 187
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=90.50 E-value=0.43 Score=55.88 Aligned_cols=78 Identities=24% Similarity=0.249 Sum_probs=61.3
Q ss_pred cCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhh--ccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcc--eecCCc
Q 003036 137 AGEHLNDEHPSRTLLLRKINSNIEDSELKALFE--QYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQN--KLTRSG 212 (854)
Q Consensus 137 ~ge~p~~e~psrtLfVgNLP~~vTEedL~elFs--qfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng--~~L~Gr 212 (854)
.|++....+.-+.|+++-||..+-+|+++.||+ .|-++.+|... ...--||+|++..||++|.+.|.. +.|.|+
T Consensus 165 kgekVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa--~N~nWyITfesd~DAQqAykylreevk~fqgK 242 (684)
T KOG2591|consen 165 KGEKVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFA--HNDNWYITFESDTDAQQAYKYLREEVKTFQGK 242 (684)
T ss_pred CccccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeee--ecCceEEEeecchhHHHHHHHHHHHHHhhcCc
Confidence 445555556678899999999999999999998 47888888742 222468999999999999988876 447788
Q ss_pred eeee
Q 003036 213 KLDI 216 (854)
Q Consensus 213 ~L~V 216 (854)
+|..
T Consensus 243 pImA 246 (684)
T KOG2591|consen 243 PIMA 246 (684)
T ss_pred chhh
Confidence 7654
No 188
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=90.34 E-value=0.48 Score=51.69 Aligned_cols=74 Identities=19% Similarity=0.358 Sum_probs=55.7
Q ss_pred CCcEEEEcCC--CCCCCH---HHHHHHhhccCCeEEEEe---C---ccccceEEEeeCCHHHHHHHHHHhcceecCCcee
Q 003036 146 PSRTLLLRKI--NSNIED---SELKALFEQYGDVRTFYR---A---SKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKL 214 (854)
Q Consensus 146 psrtLfVgNL--P~~vTE---edL~elFsqfG~I~sv~~---t---gksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L 214 (854)
+++.|.++|. +-.+++ +++++..++||.|..|.+ . -...--.||+|...++|.+|+-.|||..|.||.+
T Consensus 280 ptkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v 359 (378)
T KOG1996|consen 280 PTKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVV 359 (378)
T ss_pred chHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceee
Confidence 3445666665 334444 577889999999988762 1 1123358999999999999999999999999999
Q ss_pred eeeec
Q 003036 215 DIHYS 219 (854)
Q Consensus 215 ~V~~a 219 (854)
+..|.
T Consensus 360 ~A~Fy 364 (378)
T KOG1996|consen 360 SACFY 364 (378)
T ss_pred eheec
Confidence 88774
No 189
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=89.97 E-value=0.28 Score=56.44 Aligned_cols=70 Identities=17% Similarity=0.162 Sum_probs=56.4
Q ss_pred eecCCCCC-CHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCch
Q 003036 237 VFNLDSSV-SNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 237 V~NLp~sv-TeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~ 308 (854)
+.-.+..+ +..+|...|.+||+|..|.+ ..+.-.|.|+|.+..+|-+|.+ .++..|+++.|+|.|-.+..
T Consensus 377 lek~~~glnt~a~ln~hfA~fG~i~n~qv-~~~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 377 LEKSPFGLNTIADLNPHFAQFGEIENIQV-DYSSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hhccCCCCchHhhhhhhhhhcCccccccc-cCchhhheeeeeccccccchhc-cccceecCceeEEEEecCCc
Confidence 33344433 56889999999999999887 3346689999999999977764 68999999999999987754
No 190
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=89.19 E-value=0.72 Score=54.09 Aligned_cols=94 Identities=12% Similarity=0.143 Sum_probs=65.2
Q ss_pred HHHHHHHHhcceecCCceeeeeecCCCCCCCcccccccceeeecCCCCCCHHHHhhhhcc--cCceeEeeecCCcccEEE
Q 003036 196 AARNAMKSLQNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGV--YGEIKEIRETPQKIHQKY 273 (854)
Q Consensus 196 dA~kAl~~Lng~~L~Gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~svTeedLreiFs~--fG~I~~Vrit~~skG~AF 273 (854)
-...+++..-+..++.+-++|... ...+.|.++-||..+..|+++.+|.. +-.+++|.+ .... --|
T Consensus 149 LI~Evlresp~VqvDekgekVrp~----------~kRcIvilREIpettp~e~Vk~lf~~encPk~iscef-a~N~-nWy 216 (684)
T KOG2591|consen 149 LIVEVLRESPNVQVDEKGEKVRPN----------HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEF-AHND-NWY 216 (684)
T ss_pred HHHHHHhcCCCceeccCccccccC----------cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeee-eecC-ceE
Confidence 334455555555555555444322 12357889999999999999999974 667777776 2222 358
Q ss_pred EEeCCHHHHHHHHHHhCC--ceeCCeEEEE
Q 003036 274 IEFYDTRAAEAALRELNS--RYIAGKQIKL 301 (854)
Q Consensus 274 VeF~d~e~A~kAl~~LNG--~~I~Gk~IkV 301 (854)
|+|++..+|+.|.+.|.. ++|.||+|..
T Consensus 217 ITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 217 ITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred EEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 999999999999988854 5677776654
No 191
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=87.73 E-value=0.27 Score=54.59 Aligned_cols=76 Identities=14% Similarity=0.246 Sum_probs=60.6
Q ss_pred cEEEEcCCCCCCCHHHHH---HHhhccCCeEEEEeCccc--------cceEEEeeCCHHHHHHHHHHhcceecCCceeee
Q 003036 148 RTLLLRKINSNIEDSELK---ALFEQYGDVRTFYRASKH--------CGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (854)
Q Consensus 148 rtLfVgNLP~~vTEedL~---elFsqfG~I~sv~~tgks--------KGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V 216 (854)
.-+||-+|+..+.++++. +.|.+||.|..|...+.. -.-++|+|...++|..||...+|..+.|+.+++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 467888898887665554 689999999998842211 123899999999999999999999999999998
Q ss_pred eecCCCC
Q 003036 217 HYSIPKD 223 (854)
Q Consensus 217 ~~a~pk~ 223 (854)
.+...+.
T Consensus 158 ~~gttky 164 (327)
T KOG2068|consen 158 SLGTTKY 164 (327)
T ss_pred hhCCCcc
Confidence 8876653
No 192
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=87.30 E-value=0.57 Score=52.04 Aligned_cols=71 Identities=14% Similarity=0.106 Sum_probs=58.5
Q ss_pred ceeeecCCCCCCHHHHhhhhcccCc--eeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 003036 234 TLVVFNLDSSVSNDELHHIFGVYGE--IKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (854)
Q Consensus 234 tLfV~NLp~svTeedLreiFs~fG~--I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a 304 (854)
.+||+||-+.+|++||.+.....|. |.++++ .+.+||||+|-..+..+.++-++.|-.++|.|+.-.|.-.
T Consensus 82 ~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 82 CCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred EEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 6899999999999999998886663 344443 6789999999999999999999999999999976555443
No 193
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=87.15 E-value=1.6 Score=44.96 Aligned_cols=74 Identities=11% Similarity=0.149 Sum_probs=50.0
Q ss_pred ccceeeecCCCCCCHHHHhhhhcc-cCce---eEee--e-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCC----
Q 003036 232 QGTLVVFNLDSSVSNDELHHIFGV-YGEI---KEIR--E-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAG---- 296 (854)
Q Consensus 232 ~~tLfV~NLp~svTeedLreiFs~-fG~I---~~Vr--i-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~G---- 296 (854)
..+|+|++||+.+|++++.+.+.. ++.. ..+. . ....-.-|+|.|.+.++...-...++|..+-+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 348999999999999999998887 6655 2333 1 11112469999999999999999999987643
Q ss_pred -eEEEEEecc
Q 003036 297 -KQIKLEPSH 305 (854)
Q Consensus 297 -k~IkV~~a~ 305 (854)
.+..|++|-
T Consensus 87 ~~~~~VE~Ap 96 (176)
T PF03467_consen 87 EYPAVVEFAP 96 (176)
T ss_dssp EEEEEEEE-S
T ss_pred CcceeEEEcc
Confidence 355666654
No 194
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=85.76 E-value=2.2 Score=38.86 Aligned_cols=55 Identities=15% Similarity=0.265 Sum_probs=42.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcc
Q 003036 148 RTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQN 206 (854)
Q Consensus 148 rtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng 206 (854)
...+|. .|..+...||.++|+.||.|.--.+ ....|||...+.+.|..|+..+..
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi---~dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI---NDTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEE---CTTEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEE---cCCcEEEEeecHHHHHHHHHHhcc
Confidence 355666 9999999999999999999987665 345799999999999999988753
No 195
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=85.53 E-value=1.4 Score=45.60 Aligned_cols=61 Identities=20% Similarity=0.286 Sum_probs=45.8
Q ss_pred CHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhc--ceecCCceeeeeecCC
Q 003036 160 EDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQ--NKLTRSGKLDIHYSIP 221 (854)
Q Consensus 160 TEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Ln--g~~L~Gr~L~V~~a~p 221 (854)
..+.|+++|..|+.+..+.. -++-+-..|.|.+.++|.+|...|+ +..+.|..++|.|+.+
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~-L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSP-LKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEE-ETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEE-cCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 35789999999999888875 3555678999999999999999999 8999999999988743
No 196
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=85.06 E-value=3.2 Score=37.85 Aligned_cols=55 Identities=9% Similarity=0.245 Sum_probs=41.8
Q ss_pred ceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCC
Q 003036 234 TLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNS 291 (854)
Q Consensus 234 tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG 291 (854)
.+|---.|..+...||.++|+.||.|.--.+ ...-|||...+.+.|..|+..+.-
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I~VsWi---~dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQIYVSWI---NDTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCEEEEEE---CTTEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcEEEEEE---cCCcEEEEeecHHHHHHHHHHhcc
Confidence 3444449999999999999999999876555 345799999999999999998864
No 197
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=84.71 E-value=0.38 Score=53.45 Aligned_cols=79 Identities=16% Similarity=0.314 Sum_probs=63.3
Q ss_pred cceeeecCCCCCCHHHHh---hhhcccCceeEeeecCCc--------ccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 003036 233 GTLVVFNLDSSVSNDELH---HIFGVYGEIKEIRETPQK--------IHQKYIEFYDTRAAEAALRELNSRYIAGKQIKL 301 (854)
Q Consensus 233 ~tLfV~NLp~svTeedLr---eiFs~fG~I~~Vrit~~s--------kG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV 301 (854)
.-+||-+|+..+..+.+. +.|.+||.|..|.+.... ..-++|+|...++|..||...+|..++|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 467888888877666554 378899999998873322 124899999999999999999999999999999
Q ss_pred EeccCchhhh
Q 003036 302 EPSHLRGLRK 311 (854)
Q Consensus 302 ~~a~pk~~Rr 311 (854)
.+...+-.-.
T Consensus 158 ~~gttkycs~ 167 (327)
T KOG2068|consen 158 SLGTTKYCSF 167 (327)
T ss_pred hhCCCcchhH
Confidence 9988876544
No 198
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=83.81 E-value=4.5 Score=34.84 Aligned_cols=51 Identities=20% Similarity=0.400 Sum_probs=40.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcc----CCe--EEEEeCccccceEEEeeCCHHHHHHHHHHh
Q 003036 148 RTLLLRKINSNIEDSELKALFEQY----GDV--RTFYRASKHCGFVTISYYDIRAARNAMKSL 204 (854)
Q Consensus 148 rtLfVgNLP~~vTEedL~elFsqf----G~I--~sv~~tgksKGfAFVeF~d~edA~kAl~~L 204 (854)
.+|+|+++. +++.++|+.+|..| ++. +-|.. -.|=|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdD-----tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDD-----TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecC-----CcEEEEECCHHHHHHHHHcC
Confidence 589999996 69999999999999 532 33322 35779999999999999765
No 199
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=82.47 E-value=0.74 Score=56.30 Aligned_cols=74 Identities=14% Similarity=0.209 Sum_probs=61.5
Q ss_pred ceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCcee--CCeEEEEEeccCch
Q 003036 234 TLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYI--AGKQIKLEPSHLRG 308 (854)
Q Consensus 234 tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I--~Gk~IkV~~a~pk~ 308 (854)
+.++.|.+-..+-.-|..+|.+||.|.+.+. -+.-..|.|+|...+.|..|+.+|+|+++ -|-+.+|.+++.-.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wt-lr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWT-LRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhhee-cccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 4455666667788899999999999999885 33456899999999999999999999885 47889999988744
No 200
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=82.17 E-value=1.3 Score=47.76 Aligned_cols=60 Identities=13% Similarity=0.200 Sum_probs=52.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEE----eCccccceEEEeeCCHHHHHHHHHHhcce
Q 003036 148 RTLLLRKINSNIEDSELKALFEQYGDVRTFY----RASKHCGFVTISYYDIRAARNAMKSLQNK 207 (854)
Q Consensus 148 rtLfVgNLP~~vTEedL~elFsqfG~I~sv~----~tgksKGfAFVeF~d~edA~kAl~~Lng~ 207 (854)
..|||.||..-++-+.|.+.|++||+|.... ..++..+-++|.|...-.|.+|++.+...
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~ 95 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREG 95 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccC
Confidence 7899999999999999999999999885533 56778888999999999999999887543
No 201
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=79.69 E-value=3 Score=38.31 Aligned_cols=68 Identities=12% Similarity=0.120 Sum_probs=44.9
Q ss_pred EEEeeCCHHHHHHHHHHhcc-eecCCceeeeeecCCCCCCC-----cccccccceeeecCCCCCCHHHHhhhhc
Q 003036 187 VTISYYDIRAARNAMKSLQN-KLTRSGKLDIHYSIPKDNPS-----EKEINQGTLVVFNLDSSVSNDELHHIFG 254 (854)
Q Consensus 187 AFVeF~d~edA~kAl~~Lng-~~L~Gr~L~V~~a~pk~~~~-----~~~~~~~tLfV~NLp~svTeedLreiFs 254 (854)
|+|+|.+++-|++-++.-.- ..+.+..+.|....-..... ......++|.|.|||..+++++|++..+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 68999999999998864222 23556666554332111111 1123556899999999999999998653
No 202
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.48 E-value=2.9 Score=47.54 Aligned_cols=52 Identities=15% Similarity=0.258 Sum_probs=43.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccC----CeEEEEeCccccceEEEeeCCHHHHHHHHH
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQYG----DVRTFYRASKHCGFVTISYYDIRAARNAMK 202 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsqfG----~I~sv~~tgksKGfAFVeF~d~edA~kAl~ 202 (854)
-...|=|.++|.....+||..+|+.|+ +|..|.. -.||..|.+...|..|+.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-----thalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-----THALAVFSSVNRAAEALT 445 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-----ceeEEeecchHHHHHHhh
Confidence 347899999999999999999999998 4555442 468999999999999984
No 203
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=77.82 E-value=6 Score=34.08 Aligned_cols=53 Identities=25% Similarity=0.313 Sum_probs=39.8
Q ss_pred cceeeecCCCCCCHHHHhhhhccc----CceeEeeecCCcccEEEEEeCCHHHHHHHHHHh
Q 003036 233 GTLVVFNLDSSVSNDELHHIFGVY----GEIKEIRETPQKIHQKYIEFYDTRAAEAALREL 289 (854)
Q Consensus 233 ~tLfV~NLp~svTeedLreiFs~f----G~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~L 289 (854)
..|+|.+++ .++.++|+.+|..| +. ..|.... -.-|=|.|.+.+.|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEWId--DtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEWID--DTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEEec--CCcEEEEECCHHHHHHHHHcC
Confidence 469999985 58999999999998 43 2232212 135779999999999999875
No 204
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=75.56 E-value=35 Score=37.85 Aligned_cols=147 Identities=16% Similarity=0.248 Sum_probs=93.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeC------------ccccceEEEeeCCHHHHHHH----HHHhcc
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRA------------SKHCGFVTISYYDIRAARNA----MKSLQN 206 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~t------------gksKGfAFVeF~d~edA~kA----l~~Lng 206 (854)
++--+|.|.+.|+..+++-..+...|-+||+|++|+.- .+......+.|-+.+.|-.. ++.|..
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 45568999999999999999999999999999999931 12356899999998887653 233333
Q ss_pred --eecCCceeeeeecCCCCCC----Cc--c----------------cccccceeeecCCCCCCHHHH-hhhh---cccCc
Q 003036 207 --KLTRSGKLDIHYSIPKDNP----SE--K----------------EINQGTLVVFNLDSSVSNDEL-HHIF---GVYGE 258 (854)
Q Consensus 207 --~~L~Gr~L~V~~a~pk~~~----~~--~----------------~~~~~tLfV~NLp~svTeedL-reiF---s~fG~ 258 (854)
+.+....|.+.|..-+... .. . ....+.|.|.=- ..+.++++ .+.+ ..-+.
T Consensus 91 fK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~~n 169 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNSNN 169 (309)
T ss_pred HHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccCCC
Confidence 3467777887776422111 00 0 012334555422 33333333 2222 22232
Q ss_pred ----eeEeee-------cCCcccEEEEEeCCHHHHHHHHHHhC
Q 003036 259 ----IKEIRE-------TPQKIHQKYIEFYDTRAAEAALRELN 290 (854)
Q Consensus 259 ----I~~Vri-------t~~skG~AFVeF~d~e~A~kAl~~LN 290 (854)
|++|.+ ..-++.||.++|-++..|...+..|.
T Consensus 170 ~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 170 KRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred ceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 344554 11246899999999999999998775
No 205
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=75.12 E-value=1.9 Score=52.97 Aligned_cols=71 Identities=20% Similarity=0.316 Sum_probs=58.2
Q ss_pred EcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceec--CCceeeeeecCCCC
Q 003036 152 LRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLT--RSGKLDIHYSIPKD 223 (854)
Q Consensus 152 VgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L--~Gr~L~V~~a~pk~ 223 (854)
+-|.+-..+-.-|..+|.+||.|.+.+. -+.-..|.|+|...+.|..|+++|+|+++ -|.+.+|.++++-.
T Consensus 303 ~~nn~v~~tSssL~~l~s~yg~v~s~wt-lr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 303 LENNAVNLTSSSLATLCSDYGSVASAWT-LRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhcccccchHHHHHHHHHhhcchhhhee-cccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 3344456777888899999999999885 45556899999999999999999999885 58888998887543
No 206
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=75.11 E-value=4.5 Score=44.62 Aligned_cols=63 Identities=14% Similarity=0.192 Sum_probs=49.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCce
Q 003036 148 RTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGK 213 (854)
Q Consensus 148 rtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~ 213 (854)
.=|-|-++|+. .-..|..+|++||+|.+.... ..-.+-.|.|..+-+|++||. .+|+.|.|..
T Consensus 198 ~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~-~ngNwMhirYssr~~A~KALs-kng~ii~g~v 260 (350)
T KOG4285|consen 198 TWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTP-SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDV 260 (350)
T ss_pred ceEEEeccCcc-chhHHHHHHHhhCeeeeeecC-CCCceEEEEecchhHHHHhhh-hcCeeeccce
Confidence 34556677654 345677899999999998864 666789999999999999995 5888887653
No 207
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=74.43 E-value=6 Score=34.70 Aligned_cols=58 Identities=21% Similarity=0.290 Sum_probs=34.5
Q ss_pred CCCHHHHhhhhcccCce-----eEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 003036 243 SVSNDELHHIFGVYGEI-----KEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (854)
Q Consensus 243 svTeedLreiFs~fG~I-----~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a 304 (854)
.++..+|..++...+.| -.|++ ...|+||+-... .|.++++.|++..+.|++|+|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I---~~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDI---FDNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEE---eeeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 56777788877766544 44666 456899987654 889999999999999999999865
No 208
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=73.91 E-value=3.3 Score=40.43 Aligned_cols=105 Identities=19% Similarity=0.113 Sum_probs=71.3
Q ss_pred CCCHHHHHHHhh----ccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCCCCCCccccc--
Q 003036 158 NIEDSELKALFE----QYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDNPSEKEIN-- 231 (854)
Q Consensus 158 ~vTEedL~elFs----qfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk~~~~~~~~~-- 231 (854)
..+-..|...+. ..|.+.-. .-..++..+.|.+.+++.++++ .....+.+..+.++.-.|.....+....
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~---~l~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~ 103 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIR---DLGDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKFEHI 103 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEE---EeCCCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccccceecc
Confidence 355666665554 34444333 3367899999999999999885 3344567777777665554443332222
Q ss_pred ccceeeecCCCC-CCHHHHhhhhcccCceeEeeecC
Q 003036 232 QGTLVVFNLDSS-VSNDELHHIFGVYGEIKEIRETP 266 (854)
Q Consensus 232 ~~tLfV~NLp~s-vTeedLreiFs~fG~I~~Vrit~ 266 (854)
.--|.|.|||.. .+++-|+++-+.+|++.++....
T Consensus 104 ~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 104 PVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred chhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 224778899986 78889999999999999988743
No 209
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=73.79 E-value=2.5 Score=48.98 Aligned_cols=78 Identities=13% Similarity=0.221 Sum_probs=64.0
Q ss_pred CCCCCcEEEEcCCCCCCCH-HHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCC
Q 003036 143 DEHPSRTLLLRKINSNIED-SELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 221 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTE-edL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~p 221 (854)
.+...+.|-+.-+|..... .+|...|.+||+|..|.+... --.|.|+|.+..+|-+|. ...+..|.+|.|+|.|-.+
T Consensus 368 ~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 368 AVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc-hhhheeeeeccccccchh-ccccceecCceeEEEEecC
Confidence 3455677888888888655 899999999999999986333 457999999999997776 4689999999999999776
Q ss_pred C
Q 003036 222 K 222 (854)
Q Consensus 222 k 222 (854)
.
T Consensus 446 s 446 (526)
T KOG2135|consen 446 S 446 (526)
T ss_pred C
Confidence 4
No 210
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=73.36 E-value=7 Score=43.20 Aligned_cols=74 Identities=20% Similarity=0.282 Sum_probs=57.5
Q ss_pred ccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeE-EEEEeccCch
Q 003036 232 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQ-IKLEPSHLRG 308 (854)
Q Consensus 232 ~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~-IkV~~a~pk~ 308 (854)
..-|.|.+.|+.-. .-|..+|++||+|..... +....+-+|.|.++-+|.+||. -||+.|+|.. |-|.....+.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~-~~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtDks 271 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVT-PSNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTDKS 271 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeec-CCCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCCHH
Confidence 34677888887644 456788999999988765 4667799999999999999997 5899998854 4566655554
No 211
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=68.58 E-value=15 Score=32.03 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=42.8
Q ss_pred CCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeee
Q 003036 158 NIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (854)
Q Consensus 158 ~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V 216 (854)
.++-++++..+.+|+-.+-+.. ..| -||.|.+.++|+++....+++.+....|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~~I~~d---~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDRIRDD---RTG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcceEEec---CCE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4788999999999985443321 223 479999999999999999999887776654
No 212
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=68.46 E-value=25 Score=33.57 Aligned_cols=65 Identities=12% Similarity=0.042 Sum_probs=45.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCC-eEEEE---eCccccceEEEeeCCHHHHHHHHHHhcceecC
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQYGD-VRTFY---RASKHCGFVTISYYDIRAARNAMKSLQNKLTR 210 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsqfG~-I~sv~---~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~ 210 (854)
.+..+.+...|.-++.++|..+.+.+-+ |..++ ....++-.+++.|.+.++|+...+.+||+.+.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3455555555556666777777666653 33333 33335667999999999999999999999875
No 213
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=67.60 E-value=3.7 Score=49.46 Aligned_cols=70 Identities=19% Similarity=0.146 Sum_probs=61.4
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 303 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~ 303 (854)
....++||+|+-..+..+-++.+...+|.|..++... |||.+|..+..+.+|+..|+-..++|+.+.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 3556999999999999999999999999998876532 999999999999999999999999888776544
No 214
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=62.24 E-value=5.8 Score=47.85 Aligned_cols=73 Identities=16% Similarity=0.150 Sum_probs=62.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeee
Q 003036 142 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (854)
Q Consensus 142 ~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~ 218 (854)
..-.+.-++||+|+...+.++-++.+...+|-|.+++... |+|..|.....+.+|+..+....+++..+.+..
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 3456778999999999999999999999999998876322 999999999999999999988888888776643
No 215
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.19 E-value=31 Score=41.33 Aligned_cols=130 Identities=13% Similarity=0.163 Sum_probs=75.2
Q ss_pred CCCCCCCcEEEEcCCCCC-CCHHHHHHHhhcc----CCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceee
Q 003036 141 LNDEHPSRTLLLRKINSN-IEDSELKALFEQY----GDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 215 (854)
Q Consensus 141 p~~e~psrtLfVgNLP~~-vTEedL~elFsqf----G~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~ 215 (854)
+....+++.|-|-|+.|+ +...+|..+|..| |.|.+|.+ ..+ +|-. ..|....+.|.++.
T Consensus 168 ~~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~I-YpS------eFGk--------eRM~eEeV~GP~~e 232 (650)
T KOG2318|consen 168 PVLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKI-YPS------EFGK--------ERMKEEEVHGPPKE 232 (650)
T ss_pred cccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEe-chh------hhhH--------HHhhhhcccCChhh
Confidence 344668899999999998 7889999999865 47877774 111 1111 22333344554433
Q ss_pred eeecCCCCCCCcccccccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 003036 216 IHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIA 295 (854)
Q Consensus 216 V~~a~pk~~~~~~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~ 295 (854)
+ ..+........ .+...-++-.++-+..|+. ....--||.|+|.+++.|.+....++|.++.
T Consensus 233 l--~~~~e~~~~s~----------sD~ee~~~~~~~kLR~Yq~------~rLkYYyAVvecDsi~tA~~vYe~CDG~EfE 294 (650)
T KOG2318|consen 233 L--FKPVEEYKESE----------SDDEEEEDVDREKLRQYQL------NRLKYYYAVVECDSIETAKAVYEECDGIEFE 294 (650)
T ss_pred h--ccccccCcccc----------cchhhhhhHHHHHHHHHHh------hhheeEEEEEEecCchHHHHHHHhcCcceec
Confidence 3 12222111110 0111111112333334432 1223358999999999999999999999987
Q ss_pred C--eEEEEEe
Q 003036 296 G--KQIKLEP 303 (854)
Q Consensus 296 G--k~IkV~~ 303 (854)
. ..|-+.|
T Consensus 295 sS~~~~DLRF 304 (650)
T KOG2318|consen 295 SSANKLDLRF 304 (650)
T ss_pred cccceeeeee
Confidence 5 4444444
No 216
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=53.71 E-value=56 Score=38.24 Aligned_cols=65 Identities=17% Similarity=0.195 Sum_probs=53.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccC----CeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCC
Q 003036 147 SRTLLLRKINSNIEDSELKALFEQYG----DVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRS 211 (854)
Q Consensus 147 srtLfVgNLP~~vTEedL~elFsqfG----~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~G 211 (854)
++.|+|--+|..++-.||..+...+- .|+-|+..-..+-.++|.|.+.++|....+.+||+.+..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 78999999999999999998887543 445555444456669999999999999999999998753
No 217
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=53.21 E-value=46 Score=29.04 Aligned_cols=55 Identities=20% Similarity=0.378 Sum_probs=43.4
Q ss_pred CCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 003036 243 SVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKL 301 (854)
Q Consensus 243 svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV 301 (854)
.++-++++..+..|+- ..|+. +..| =||.|.+.++|+++.+..+|..+.+.++.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~--d~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRD--DRTG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEe--cCCE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 5778899999999975 33333 2333 379999999999999999999988877765
No 218
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=49.66 E-value=21 Score=36.96 Aligned_cols=73 Identities=19% Similarity=0.251 Sum_probs=49.1
Q ss_pred ceeeecCCCCCC-----HHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe-EEEEEeccCc
Q 003036 234 TLVVFNLDSSVS-----NDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGK-QIKLEPSHLR 307 (854)
Q Consensus 234 tLfV~NLp~svT-----eedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk-~IkV~~a~pk 307 (854)
++.+.+++..+- ......+|.+|-+..-.++ -++.+..-|-|.+++.|..|...+++..+.|+ .++.-++.+.
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~-lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQL-LRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHH-HHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCC
Confidence 456666665432 2233445555554433332 22445677999999999999999999999998 8888777653
No 219
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=48.76 E-value=57 Score=28.54 Aligned_cols=58 Identities=10% Similarity=0.182 Sum_probs=34.4
Q ss_pred CCCHHHHHHHhhccC-----CeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeec
Q 003036 158 NIEDSELKALFEQYG-----DVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (854)
Q Consensus 158 ~vTEedL~elFsqfG-----~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a 219 (854)
.++..+|..++...+ .|-.|.. ...|.||+-.. +.|+++++.|++..+.|+++.|+.+
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I---~~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDI---FDNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEE---eeeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 477788888888665 4445554 44588888764 5889999999999999999998753
No 220
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=29.97 E-value=38 Score=35.18 Aligned_cols=73 Identities=19% Similarity=0.262 Sum_probs=53.2
Q ss_pred cEEEEcCCCCCCCH-----HHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCc-eeeeeecCC
Q 003036 148 RTLLLRKINSNIED-----SELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSG-KLDIHYSIP 221 (854)
Q Consensus 148 rtLfVgNLP~~vTE-----edL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr-~L~V~~a~p 221 (854)
.++++.+|+.++-. .....+|.+|-+...... -++.+..-|.|.+++.|..|...++...+.|+ .++.-|+.+
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~-lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQL-LRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHH-HHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 56788888766433 233456777665544432 35667788999999999999999999999988 777766654
No 221
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=29.07 E-value=52 Score=36.38 Aligned_cols=48 Identities=13% Similarity=0.194 Sum_probs=37.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCe-EEEEeCccccceEEEeeCCHH
Q 003036 147 SRTLLLRKINSNIEDSELKALFEQYGDV-RTFYRASKHCGFVTISYYDIR 195 (854)
Q Consensus 147 srtLfVgNLP~~vTEedL~elFsqfG~I-~sv~~tgksKGfAFVeF~d~e 195 (854)
..-|+|+||+.++.-.||+..+.+-+-+ .++.- .-+.|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw-kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW-KGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEee-ecCCcceeEecCCcc
Confidence 3569999999999999999999987754 23332 456788999998754
No 222
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=28.65 E-value=38 Score=37.12 Aligned_cols=62 Identities=23% Similarity=0.413 Sum_probs=43.6
Q ss_pred cEEEEcCCCCC------------CCHHHHHHHhhccCCeEEEE----------eCccc-----cce---------EEEee
Q 003036 148 RTLLLRKINSN------------IEDSELKALFEQYGDVRTFY----------RASKH-----CGF---------VTISY 191 (854)
Q Consensus 148 rtLfVgNLP~~------------vTEedL~elFsqfG~I~sv~----------~tgks-----KGf---------AFVeF 191 (854)
.||++.+||-. -+++-|+..|+.||.|+.|. ++++. +|| |||+|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 58999988832 36788999999999998876 23333 333 45666
Q ss_pred CCHHHHHHHHHHhcceec
Q 003036 192 YDIRAARNAMKSLQNKLT 209 (854)
Q Consensus 192 ~d~edA~kAl~~Lng~~L 209 (854)
..-..-..|+.+|.|..+
T Consensus 230 meykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHhHHHHHHHHhcchH
Confidence 666666677877777653
No 223
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=24.20 E-value=23 Score=38.81 Aligned_cols=75 Identities=19% Similarity=0.347 Sum_probs=48.0
Q ss_pred cceeeecCCCC------------CCHHHHhhhhcccCceeEeee----------cCCc-----ccE---------EEEEe
Q 003036 233 GTLVVFNLDSS------------VSNDELHHIFGVYGEIKEIRE----------TPQK-----IHQ---------KYIEF 276 (854)
Q Consensus 233 ~tLfV~NLp~s------------vTeedLreiFs~fG~I~~Vri----------t~~s-----kG~---------AFVeF 276 (854)
.||++.+||-. -+++.|+..|+.||+|..|.+ +++. +|| |||+|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 47888888743 367889999999999988775 2222 233 34555
Q ss_pred CCHHHHHHHHHHhCCcee----CC----eEEEEEeccCc
Q 003036 277 YDTRAAEAALRELNSRYI----AG----KQIKLEPSHLR 307 (854)
Q Consensus 277 ~d~e~A~kAl~~LNG~~I----~G----k~IkV~~a~pk 307 (854)
-...--..|+.+|.|..+ .| -.++|.|.+..
T Consensus 230 meykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred HHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 555555666666766543 22 35677765543
No 224
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.42 E-value=1.4e+02 Score=34.60 Aligned_cols=56 Identities=16% Similarity=0.207 Sum_probs=42.9
Q ss_pred ccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHH
Q 003036 232 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRE 288 (854)
Q Consensus 232 ~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~ 288 (854)
...|-|.++|.....+||...|+.|+. +.++|.-.-..++|-.|.+...|..||-.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~-kgfdIkWvDdthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQN-KGFDIKWVDDTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhc-CCceeEEeecceeEEeecchHHHHHHhhc
Confidence 347889999999999999999999975 12222111245899999999999999864
No 225
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=20.01 E-value=1.9e+02 Score=26.48 Aligned_cols=54 Identities=13% Similarity=0.140 Sum_probs=0.0
Q ss_pred EEcCCCCCCCHHHHHHHhhc-cC-CeEEEEeCccccce--EEEeeCCHHHHHHHHHHh
Q 003036 151 LLRKINSNIEDSELKALFEQ-YG-DVRTFYRASKHCGF--VTISYYDIRAARNAMKSL 204 (854)
Q Consensus 151 fVgNLP~~vTEedL~elFsq-fG-~I~sv~~tgksKGf--AFVeF~d~edA~kAl~~L 204 (854)
|+=.++.+++..+|++.++. || +|..|.+.....++ |||.+....+|......+
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Done!