Query 003036
Match_columns 854
No_of_seqs 691 out of 2123
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 10:58:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003036.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003036hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 5.7E-30 2E-34 262.2 18.0 167 143-311 11-185 (213)
2 3md3_A Nuclear and cytoplasmic 100.0 7.7E-29 2.6E-33 239.6 19.2 157 148-306 1-166 (166)
3 1b7f_A Protein (SXL-lethal pro 100.0 2.9E-28 9.9E-33 236.8 19.3 155 146-304 2-168 (168)
4 1fxl_A Paraneoplastic encephal 100.0 4E-28 1.4E-32 234.8 18.3 155 146-304 1-167 (167)
5 1l3k_A Heterogeneous nuclear r 100.0 4.5E-28 1.5E-32 241.6 18.0 169 141-311 7-187 (196)
6 1fje_B Nucleolin RBD12, protei 100.0 2.1E-28 7.3E-33 240.4 14.9 162 143-307 9-174 (175)
7 2qfj_A FBP-interacting repress 100.0 7E-28 2.4E-32 243.8 18.3 165 144-308 25-206 (216)
8 2adc_A Polypyrimidine tract-bi 100.0 1.5E-27 5.3E-32 246.8 20.5 165 143-307 30-228 (229)
9 3pgw_A U1-A; protein-RNA compl 100.0 1.7E-27 5.7E-32 252.3 20.5 163 143-305 5-281 (282)
10 2g4b_A Splicing factor U2AF 65 100.0 2E-27 6.7E-32 232.2 18.1 154 145-304 2-171 (172)
11 2cjk_A Nuclear polyadenylated 100.0 5.7E-28 1.9E-32 234.9 14.0 155 146-307 2-166 (167)
12 3nmr_A Cugbp ELAV-like family 99.9 3.8E-27 1.3E-31 230.0 18.3 157 146-305 2-175 (175)
13 2yh0_A Splicing factor U2AF 65 99.9 3.1E-27 1.1E-31 235.9 17.7 161 146-308 3-195 (198)
14 1qm9_A Polypyrimidine tract-bi 99.9 2.3E-27 7.9E-32 238.2 15.9 161 147-307 3-197 (198)
15 3tyt_A Heterogeneous nuclear r 99.9 6E-27 2.1E-31 240.1 18.6 159 146-304 3-204 (205)
16 3smz_A Protein raver-1, ribonu 99.9 8.2E-27 2.8E-31 247.2 18.1 170 145-315 93-273 (284)
17 2ghp_A U4/U6 snRNA-associated 99.9 1.8E-25 6.1E-30 237.9 17.9 161 146-307 116-291 (292)
18 3smz_A Protein raver-1, ribonu 99.9 4.2E-25 1.4E-29 234.1 20.2 152 145-308 20-176 (284)
19 3sde_A Paraspeckle component 1 99.9 3.9E-25 1.3E-29 233.3 18.0 155 145-310 20-182 (261)
20 2ghp_A U4/U6 snRNA-associated 99.9 1.6E-24 5.6E-29 230.5 17.2 156 141-308 35-198 (292)
21 2i2y_A Fusion protein consists 99.8 3.8E-19 1.3E-23 172.4 11.4 127 180-307 9-148 (150)
22 2kn4_A Immunoglobulin G-bindin 99.8 2.4E-18 8.2E-23 167.5 13.9 131 178-308 7-151 (158)
23 4f25_A Polyadenylate-binding p 99.7 3.2E-18 1.1E-22 159.2 10.4 103 146-248 4-113 (115)
24 3lqv_A PRE-mRNA branch site pr 99.6 2.6E-16 8.8E-21 145.4 6.8 103 144-258 5-109 (115)
25 4fxv_A ELAV-like protein 1; RN 99.6 7.1E-16 2.4E-20 140.2 9.5 76 146-221 18-98 (99)
26 4fxv_A ELAV-like protein 1; RN 99.6 1.1E-15 3.7E-20 139.0 9.8 74 233-306 20-98 (99)
27 2lea_A Serine/arginine-rich sp 99.6 7.7E-16 2.6E-20 147.6 6.4 119 185-308 5-128 (135)
28 2hvz_A Splicing factor, argini 99.6 2.8E-15 9.4E-20 135.3 9.3 94 148-241 1-100 (101)
29 3s8s_A Histone-lysine N-methyl 99.6 4.6E-15 1.6E-19 137.5 10.9 83 231-313 5-92 (110)
30 2do4_A Squamous cell carcinoma 99.6 7.3E-15 2.5E-19 132.3 11.9 84 141-224 11-98 (100)
31 2lxi_A RNA-binding protein 10; 99.6 1.6E-15 5.6E-20 135.5 7.4 80 147-226 1-87 (91)
32 1whw_A Hypothetical protein ri 99.6 1.1E-14 3.8E-19 130.7 12.5 82 144-225 5-91 (99)
33 3r27_A HnRNP L, heterogeneous 99.6 5.5E-15 1.9E-19 135.4 10.5 80 143-223 17-98 (100)
34 3s8s_A Histone-lysine N-methyl 99.6 4.8E-15 1.6E-19 137.4 10.1 79 144-222 3-86 (110)
35 1rk8_A CG8781-PA, CG8781-PA pr 99.6 4.2E-15 1.5E-19 146.5 9.6 123 189-311 11-156 (165)
36 4f25_A Polyadenylate-binding p 99.6 5.4E-15 1.8E-19 137.4 9.4 80 232-311 5-87 (115)
37 1sjq_A Polypyrimidine tract-bi 99.6 9.1E-15 3.1E-19 135.1 10.6 83 143-226 12-96 (105)
38 2cpz_A CUG triplet repeat RNA- 99.6 1.2E-14 4E-19 134.4 11.3 85 141-225 19-108 (115)
39 1wex_A Hypothetical protein (r 99.6 1.5E-14 5.2E-19 133.1 11.8 83 141-224 9-93 (104)
40 1x5u_A Splicing factor 3B subu 99.6 2E-14 6.9E-19 130.4 12.3 84 142-225 10-98 (105)
41 2dnz_A Probable RNA-binding pr 99.6 1.7E-14 5.8E-19 128.3 11.4 81 145-225 3-88 (95)
42 2dnm_A SRP46 splicing factor; 99.6 1.2E-14 4.3E-19 131.5 10.5 85 141-225 7-96 (103)
43 2cph_A RNA binding motif prote 99.6 2.3E-14 7.9E-19 130.2 12.3 84 142-225 10-100 (107)
44 1x4a_A Splicing factor, argini 99.6 2.1E-14 7E-19 131.5 11.9 84 142-225 17-102 (109)
45 2dgs_A DAZ-associated protein 99.6 2.2E-14 7.4E-19 129.0 11.8 83 143-226 6-93 (99)
46 2x1f_A MRNA 3'-END-processing 99.6 1.4E-14 4.6E-19 129.7 10.4 79 146-224 1-84 (96)
47 2dgv_A HnRNP M, heterogeneous 99.5 1.6E-14 5.6E-19 127.7 10.7 82 144-225 5-89 (92)
48 2cqi_A Nucleolysin TIAR; RNA r 99.5 2.8E-14 9.5E-19 129.2 12.4 84 142-225 10-96 (103)
49 3bs9_A Nucleolysin TIA-1 isofo 99.5 9.9E-15 3.4E-19 127.6 9.1 78 145-222 4-86 (87)
50 2d9p_A Polyadenylate-binding p 99.5 1.8E-14 6.2E-19 130.4 11.1 85 142-226 10-97 (103)
51 2lxi_A RNA-binding protein 10; 99.5 3.1E-15 1.1E-19 133.6 5.9 77 232-308 1-84 (91)
52 2ad9_A Polypyrimidine tract-bi 99.5 1.6E-14 5.4E-19 136.4 11.1 89 137-226 21-111 (119)
53 2e5h_A Zinc finger CCHC-type a 99.5 1.9E-14 6.4E-19 127.8 10.9 78 143-220 12-94 (94)
54 2cq3_A RNA-binding protein 9; 99.5 3.2E-14 1.1E-18 128.7 12.6 84 142-225 10-96 (103)
55 2dgo_A Cytotoxic granule-assoc 99.5 2.5E-14 8.5E-19 132.0 12.1 84 142-225 10-98 (115)
56 3md1_A Nuclear and cytoplasmic 99.5 1.4E-14 4.7E-19 125.6 9.8 77 147-223 1-82 (83)
57 1why_A Hypothetical protein ri 99.5 3.2E-14 1.1E-18 127.6 12.3 81 143-224 13-95 (97)
58 2wbr_A GW182, gawky, LD47780P; 99.5 9.6E-15 3.3E-19 130.7 8.7 81 232-313 7-87 (89)
59 2cq0_A Eukaryotic translation 99.5 1.7E-14 5.9E-19 130.5 10.5 83 143-225 11-98 (103)
60 1x4h_A RNA-binding protein 28; 99.5 3.7E-14 1.3E-18 129.7 12.6 84 142-225 10-104 (111)
61 3mdf_A Peptidyl-prolyl CIS-tra 99.5 1.9E-14 6.5E-19 125.3 10.1 77 144-220 4-85 (85)
62 2cqb_A Peptidyl-prolyl CIS-tra 99.5 1.9E-14 6.5E-19 129.9 10.3 82 144-225 9-95 (102)
63 2cq1_A PTB-like protein L; RRM 99.5 2.9E-14 9.9E-19 130.5 11.6 84 141-225 9-94 (101)
64 1x5s_A Cold-inducible RNA-bind 99.5 2.1E-14 7.1E-19 129.6 10.4 83 143-225 8-95 (102)
65 2dnh_A Bruno-like 5, RNA bindi 99.5 3.6E-14 1.2E-18 128.7 11.9 82 144-225 12-100 (105)
66 1p27_B RNA-binding protein 8A; 99.5 1.8E-14 6.1E-19 130.9 9.8 83 141-223 17-104 (106)
67 2cqc_A Arginine/serine-rich sp 99.5 2.4E-14 8.1E-19 127.2 10.1 79 143-221 11-94 (95)
68 2cpf_A RNA binding motif prote 99.5 2.6E-14 8.9E-19 128.0 10.3 81 145-225 3-91 (98)
69 1x4d_A Matrin 3; structural ge 99.5 1.8E-14 6.2E-19 132.4 9.4 80 143-223 11-93 (102)
70 3bs9_A Nucleolysin TIA-1 isofo 99.5 2.4E-14 8.3E-19 125.1 9.8 77 231-307 5-86 (87)
71 1x5t_A Splicing factor 3B subu 99.5 1.7E-14 5.7E-19 128.6 8.9 82 145-226 3-90 (96)
72 2dgt_A RNA-binding protein 30; 99.5 4.1E-14 1.4E-18 125.6 11.4 82 141-225 4-85 (92)
73 2do4_A Squamous cell carcinoma 99.5 2.8E-14 9.6E-19 128.5 10.4 79 230-308 15-97 (100)
74 2jrs_A RNA-binding protein 39; 99.5 2.4E-14 8.3E-19 131.8 10.2 82 142-223 21-107 (108)
75 2dgp_A Bruno-like 4, RNA bindi 99.5 3.1E-14 1.1E-18 129.3 10.6 84 142-225 8-99 (106)
76 3md1_A Nuclear and cytoplasmic 99.5 2.8E-14 9.6E-19 123.6 9.9 76 233-308 2-82 (83)
77 2ywk_A Putative RNA-binding pr 99.5 1.8E-14 6.1E-19 128.2 8.8 80 141-220 10-93 (95)
78 1whw_A Hypothetical protein ri 99.5 2.3E-14 7.8E-19 128.6 9.5 79 231-309 7-90 (99)
79 2cqd_A RNA-binding region cont 99.5 4.4E-14 1.5E-18 130.7 11.7 83 142-225 12-99 (116)
80 2dnq_A RNA-binding protein 4B; 99.5 4.6E-14 1.6E-18 124.8 11.2 79 144-225 5-83 (90)
81 2d9p_A Polyadenylate-binding p 99.5 2.8E-14 9.6E-19 129.1 10.0 81 230-310 13-96 (103)
82 2kxn_B Transformer-2 protein h 99.5 2.6E-14 8.7E-19 136.1 10.0 83 141-223 40-127 (129)
83 1wi8_A EIF-4B, eukaryotic tran 99.5 5.1E-14 1.7E-18 127.8 11.5 83 141-225 9-97 (104)
84 2fc9_A NCL protein; structure 99.5 3.2E-14 1.1E-18 128.3 10.2 83 143-225 11-94 (101)
85 2ytc_A PRE-mRNA-splicing facto 99.5 3.6E-14 1.2E-18 123.7 10.1 79 141-220 6-85 (85)
86 1x4a_A Splicing factor, argini 99.5 3.6E-14 1.2E-18 129.9 10.5 79 230-308 20-100 (109)
87 3r27_A HnRNP L, heterogeneous 99.5 2.2E-14 7.5E-19 131.5 8.9 78 230-308 19-98 (100)
88 2cqi_A Nucleolysin TIAR; RNA r 99.5 4.2E-14 1.4E-18 128.0 10.7 81 230-310 13-96 (103)
89 1x4f_A Matrin 3; structural ge 99.5 2.5E-14 8.6E-19 133.6 9.4 81 143-224 21-104 (112)
90 2cpj_A Non-POU domain-containi 99.5 3.7E-14 1.3E-18 127.6 10.2 81 143-224 11-91 (99)
91 1oo0_B CG8781-PA, drosophila Y 99.5 3.6E-14 1.2E-18 130.0 10.1 82 142-223 21-107 (110)
92 3mdf_A Peptidyl-prolyl CIS-tra 99.5 3.9E-14 1.3E-18 123.3 9.8 75 231-305 6-85 (85)
93 2x1f_A MRNA 3'-END-processing 99.5 4.4E-14 1.5E-18 126.4 10.3 79 232-310 2-85 (96)
94 1fjc_A Nucleolin RBD2, protein 99.5 2.3E-14 7.9E-19 127.9 8.5 82 143-224 12-93 (96)
95 2cq0_A Eukaryotic translation 99.5 3.7E-14 1.3E-18 128.3 9.9 79 230-308 13-96 (103)
96 2cpz_A CUG triplet repeat RNA- 99.5 2.8E-14 9.7E-19 131.8 9.3 80 230-309 23-107 (115)
97 2lkz_A RNA-binding protein 5; 99.5 1.6E-14 5.4E-19 130.8 7.4 76 231-306 8-94 (95)
98 1oo0_B CG8781-PA, drosophila Y 99.5 3.9E-14 1.3E-18 129.7 10.1 81 230-310 24-109 (110)
99 2cqc_A Arginine/serine-rich sp 99.5 6.3E-14 2.1E-18 124.5 11.1 77 230-306 13-94 (95)
100 4a8x_A RNA-binding protein wit 99.5 4.8E-14 1.6E-18 123.3 10.1 78 146-223 3-86 (88)
101 2dh8_A DAZ-associated protein 99.5 3.5E-14 1.2E-18 128.9 9.5 85 141-226 10-99 (105)
102 2a3j_A U1 small nuclear ribonu 99.5 4.4E-14 1.5E-18 134.6 10.6 82 143-224 25-112 (127)
103 1nu4_A U1A RNA binding domain; 99.5 3E-14 1E-18 127.2 8.8 82 143-224 4-91 (97)
104 2cph_A RNA binding motif prote 99.5 4.7E-14 1.6E-18 128.2 10.2 81 229-309 12-99 (107)
105 2dhg_A TRNA selenocysteine ass 99.5 4.8E-14 1.6E-18 127.7 10.0 83 143-225 5-93 (104)
106 1x5u_A Splicing factor 3B subu 99.5 3.9E-14 1.3E-18 128.5 9.4 80 230-309 13-97 (105)
107 2div_A TRNA selenocysteine ass 99.5 4.8E-14 1.6E-18 126.5 9.8 80 144-223 6-95 (99)
108 2e5j_A Methenyltetrahydrofolat 99.5 6.6E-14 2.3E-18 125.6 10.7 81 143-223 15-95 (97)
109 2dnz_A Probable RNA-binding pr 99.5 4.1E-14 1.4E-18 125.9 9.2 78 231-308 4-86 (95)
110 2dnh_A Bruno-like 5, RNA bindi 99.5 4.7E-14 1.6E-18 127.9 9.7 81 230-310 13-100 (105)
111 2cqb_A Peptidyl-prolyl CIS-tra 99.5 2.8E-14 9.7E-19 128.7 8.2 79 231-309 11-94 (102)
112 2la4_A Nuclear and cytoplasmic 99.5 4E-14 1.4E-18 127.7 9.2 77 145-222 25-101 (101)
113 2e5h_A Zinc finger CCHC-type a 99.5 8.8E-14 3E-18 123.5 11.2 76 230-305 14-94 (94)
114 2dng_A Eukaryotic translation 99.5 7.6E-14 2.6E-18 126.4 10.9 83 141-225 9-96 (103)
115 2lkz_A RNA-binding protein 5; 99.5 2.5E-14 8.5E-19 129.5 7.6 78 144-221 6-94 (95)
116 2wbr_A GW182, gawky, LD47780P; 99.5 4.1E-14 1.4E-18 126.6 8.8 73 146-219 6-78 (89)
117 3p5t_L Cleavage and polyadenyl 99.5 1.6E-14 5.3E-19 128.2 6.0 77 148-224 2-85 (90)
118 2cq1_A PTB-like protein L; RRM 99.5 6.8E-14 2.3E-18 128.1 10.5 80 230-310 13-94 (101)
119 2fy1_A RNA-binding motif prote 99.5 6.3E-14 2.1E-18 130.7 10.4 82 144-225 4-89 (116)
120 2err_A Ataxin-2-binding protei 99.5 4.3E-14 1.5E-18 130.1 9.1 81 142-222 24-107 (109)
121 1sjq_A Polypyrimidine tract-bi 99.5 2E-14 6.7E-19 132.9 6.8 79 231-310 15-95 (105)
122 2dgu_A Heterogeneous nuclear r 99.5 1.1E-13 3.7E-18 125.6 11.7 79 144-225 8-86 (103)
123 2cq3_A RNA-binding protein 9; 99.5 9.1E-14 3.1E-18 125.8 11.1 79 230-308 13-94 (103)
124 2do0_A HnRNP M, heterogeneous 99.5 1.1E-13 3.6E-18 127.4 11.7 81 143-223 11-95 (114)
125 2fc8_A NCL protein; structure 99.5 5.8E-14 2E-18 126.7 9.8 83 143-225 11-95 (102)
126 2cpe_A RNA-binding protein EWS 99.5 6E-14 2.1E-18 129.0 10.1 84 142-225 10-106 (113)
127 1u6f_A Tcubp1, RNA-binding pro 99.5 8E-14 2.7E-18 132.8 11.3 83 143-225 38-125 (139)
128 2dgo_A Cytotoxic granule-assoc 99.5 6.7E-14 2.3E-18 129.1 10.4 81 230-310 13-98 (115)
129 1p27_B RNA-binding protein 8A; 99.5 4.3E-14 1.5E-18 128.4 8.9 79 230-308 21-104 (106)
130 2khc_A Testis-specific RNP-typ 99.5 5.4E-14 1.8E-18 130.3 9.7 80 141-220 34-118 (118)
131 4a8x_A RNA-binding protein wit 99.5 4.2E-14 1.5E-18 123.6 8.5 77 232-308 4-86 (88)
132 1x4c_A Splicing factor, argini 99.5 1.5E-13 5E-18 126.1 12.4 81 143-225 11-96 (108)
133 3ex7_B RNA-binding protein 8A; 99.5 7.2E-14 2.5E-18 131.0 10.5 85 141-225 16-105 (126)
134 2la6_A RNA-binding protein FUS 99.5 6.1E-14 2.1E-18 126.2 9.6 79 142-220 8-99 (99)
135 3pgw_S U1-70K; protein-RNA com 99.5 1.2E-14 4.1E-19 165.0 6.1 145 164-308 9-183 (437)
136 2jvr_A Nucleolar protein 3; RN 99.5 4.7E-14 1.6E-18 131.4 9.0 77 232-308 28-106 (111)
137 2cpx_A Hypothetical protein FL 99.5 6E-14 2.1E-18 129.3 9.7 83 143-225 21-108 (115)
138 1wf1_A RNA-binding protein RAL 99.5 1.2E-13 4.2E-18 126.7 11.7 78 143-223 23-101 (110)
139 1x5t_A Splicing factor 3B subu 99.5 3.3E-14 1.1E-18 126.7 7.6 79 231-309 4-88 (96)
140 1x4h_A RNA-binding protein 28; 99.5 8.3E-14 2.8E-18 127.4 10.5 81 230-310 13-104 (111)
141 1wf1_A RNA-binding protein RAL 99.5 4E-14 1.4E-18 129.9 8.3 95 210-308 6-101 (110)
142 1why_A Hypothetical protein ri 99.5 7.4E-14 2.5E-18 125.2 9.8 77 231-308 16-94 (97)
143 2dgs_A DAZ-associated protein 99.5 6.2E-14 2.1E-18 126.0 9.3 78 231-309 9-91 (99)
144 3ns6_A Eukaryotic translation 99.5 1.8E-14 6.3E-19 130.6 5.8 78 145-222 4-93 (100)
145 1x5s_A Cold-inducible RNA-bind 99.5 2.9E-14 9.9E-19 128.7 7.1 79 231-309 11-94 (102)
146 1p1t_A Cleavage stimulation fa 99.5 2E-14 6.8E-19 130.0 6.0 82 143-224 4-90 (104)
147 1whx_A Hypothetical protein ri 99.5 5E-14 1.7E-18 130.3 8.7 78 144-222 7-84 (111)
148 2dnp_A RNA-binding protein 14; 99.5 1.3E-13 4.3E-18 122.0 10.8 80 143-225 5-84 (90)
149 3ulh_A THO complex subunit 4; 99.5 8.2E-14 2.8E-18 126.7 9.8 79 142-220 24-106 (107)
150 1fjc_A Nucleolin RBD2, protein 99.5 5E-14 1.7E-18 125.7 8.3 80 230-309 14-93 (96)
151 2cpd_A Apobec-1 stimulating pr 99.5 1.9E-13 6.5E-18 122.9 12.1 80 143-225 11-92 (99)
152 1x4d_A Matrin 3; structural ge 99.5 5.6E-14 1.9E-18 129.1 8.7 76 231-307 14-92 (102)
153 2dgx_A KIAA0430 protein; RRM d 99.5 1.2E-13 4.2E-18 123.9 10.8 81 145-225 7-93 (96)
154 2lea_A Serine/arginine-rich sp 99.5 3.8E-14 1.3E-18 135.8 7.8 87 139-225 39-130 (135)
155 2dnm_A SRP46 splicing factor; 99.5 6E-14 2E-18 127.0 8.6 78 231-308 12-94 (103)
156 2cq4_A RNA binding motif prote 99.5 5.4E-14 1.8E-18 129.7 8.5 80 230-310 23-107 (114)
157 2xnq_A Nuclear polyadenylated 99.5 1.4E-13 4.8E-18 124.2 11.0 77 143-222 18-95 (97)
158 2cpf_A RNA binding motif prote 99.5 4.9E-14 1.7E-18 126.2 7.9 78 231-308 4-89 (98)
159 2m2b_A RNA-binding protein 10; 99.5 4.2E-14 1.4E-18 134.2 7.9 84 141-225 17-111 (131)
160 2cqh_A IGF-II mRNA-binding pro 99.5 6.2E-14 2.1E-18 124.5 8.4 80 144-225 5-86 (93)
161 3p5t_L Cleavage and polyadenyl 99.5 2.1E-14 7.1E-19 127.3 5.2 76 233-308 2-84 (90)
162 2ywk_A Putative RNA-binding pr 99.5 9.2E-14 3.1E-18 123.6 9.5 76 231-306 15-94 (95)
163 2dnq_A RNA-binding protein 4B; 99.5 6.4E-14 2.2E-18 123.9 8.4 75 231-308 7-81 (90)
164 2nlw_A Eukaryotic translation 99.5 1.3E-13 4.4E-18 125.9 10.6 80 143-222 11-100 (105)
165 2jvo_A Nucleolar protein 3; nu 99.5 8.9E-14 3.1E-18 128.1 9.6 81 141-224 25-105 (108)
166 2dgt_A RNA-binding protein 30; 99.5 1E-13 3.4E-18 123.1 9.5 76 230-308 8-83 (92)
167 2do0_A HnRNP M, heterogeneous 99.5 1.9E-13 6.3E-18 125.8 11.7 78 231-308 14-95 (114)
168 2kvi_A Nuclear polyadenylated 99.5 7.8E-14 2.7E-18 125.1 8.9 80 143-225 6-86 (96)
169 2dgx_A KIAA0430 protein; RRM d 99.5 7.9E-14 2.7E-18 125.2 8.9 78 231-308 8-91 (96)
170 1p1t_A Cleavage stimulation fa 99.5 4.9E-14 1.7E-18 127.4 7.6 84 230-313 6-94 (104)
171 1wex_A Hypothetical protein (r 99.5 6.1E-14 2.1E-18 129.0 8.3 78 230-308 13-92 (104)
172 2ad9_A Polypyrimidine tract-bi 99.5 5E-14 1.7E-18 133.0 7.8 79 231-310 30-110 (119)
173 1x5o_A RNA binding motif, sing 99.5 2.2E-13 7.6E-18 125.4 12.0 80 143-222 21-112 (114)
174 1x4e_A RNA binding motif, sing 99.5 4.5E-14 1.5E-18 123.2 6.9 76 145-220 3-83 (85)
175 2err_A Ataxin-2-binding protei 99.5 8.6E-14 3E-18 128.1 9.2 79 229-307 26-107 (109)
176 1x4g_A Nucleolysin TIAR; struc 99.5 1.4E-13 4.9E-18 126.0 10.6 82 143-225 21-102 (109)
177 1u6f_A Tcubp1, RNA-binding pro 99.5 7.3E-14 2.5E-18 133.1 8.9 81 230-310 40-125 (139)
178 2jvo_A Nucleolar protein 3; nu 99.5 7.9E-14 2.7E-18 128.5 8.7 79 229-310 28-106 (108)
179 2cpj_A Non-POU domain-containi 99.5 8.6E-14 2.9E-18 125.2 8.8 78 230-308 13-90 (99)
180 2ytc_A PRE-mRNA-splicing facto 99.5 1E-13 3.5E-18 120.8 8.9 75 230-305 10-85 (85)
181 2dgp_A Bruno-like 4, RNA bindi 99.5 7.1E-14 2.4E-18 127.0 8.3 80 230-309 11-98 (106)
182 2cpd_A Apobec-1 stimulating pr 99.5 1.6E-13 5.5E-18 123.4 10.5 76 230-308 13-90 (99)
183 2dgv_A HnRNP M, heterogeneous 99.5 5.4E-14 1.8E-18 124.4 7.2 78 231-308 7-87 (92)
184 2khc_A Testis-specific RNP-typ 99.5 1.1E-13 3.8E-18 128.2 9.6 76 230-305 38-118 (118)
185 3ucg_A Polyadenylate-binding p 99.5 1.1E-13 3.7E-18 121.4 9.0 76 146-222 5-85 (89)
186 2dnp_A RNA-binding protein 14; 99.5 1.1E-13 3.6E-18 122.4 8.9 76 230-308 7-82 (90)
187 2dgu_A Heterogeneous nuclear r 99.5 8.6E-14 3E-18 126.2 8.5 77 231-310 10-86 (103)
188 2cpi_A CCR4-NOT transcription 99.5 8.6E-14 2.9E-18 128.4 8.6 81 143-223 11-102 (111)
189 2jrs_A RNA-binding protein 39; 99.5 1E-13 3.5E-18 127.6 9.0 79 230-308 24-107 (108)
190 2xnq_A Nuclear polyadenylated 99.5 1.7E-13 5.7E-18 123.7 10.3 76 230-308 20-96 (97)
191 3ns6_A Eukaryotic translation 99.5 3.6E-14 1.2E-18 128.6 5.8 77 232-308 6-94 (100)
192 2cqg_A TDP-43, TAR DNA-binding 99.5 2.9E-13 1E-17 122.4 11.8 82 142-225 10-96 (103)
193 2j76_E EIF-4B, EIF4B, eukaryot 99.5 7.9E-14 2.7E-18 126.1 8.0 79 143-223 15-99 (100)
194 2fc8_A NCL protein; structure 99.5 2E-13 6.7E-18 123.2 10.5 81 229-309 12-94 (102)
195 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 2.2E-13 7.6E-18 129.2 11.4 77 143-219 59-140 (140)
196 1x5p_A Negative elongation fac 99.5 3.8E-13 1.3E-17 120.7 12.2 80 143-225 11-90 (97)
197 2jvr_A Nucleolar protein 3; RN 99.5 1.1E-13 3.9E-18 128.8 9.1 78 145-222 26-105 (111)
198 1whx_A Hypothetical protein ri 99.5 1E-13 3.4E-18 128.3 8.7 77 231-308 9-85 (111)
199 2cqp_A RNA-binding protein 12; 99.5 7E-14 2.4E-18 125.2 7.4 79 144-222 12-95 (98)
200 2cpi_A CCR4-NOT transcription 99.5 1.8E-13 6.1E-18 126.2 10.3 79 230-308 13-102 (111)
201 2la4_A Nuclear and cytoplasmic 99.5 7.5E-14 2.6E-18 125.9 7.6 76 231-307 26-101 (101)
202 2cpe_A RNA-binding protein EWS 99.5 1.2E-13 4.2E-18 127.0 9.1 80 230-309 13-105 (113)
203 2kxn_B Transformer-2 protein h 99.5 1.1E-13 3.7E-18 131.7 9.0 78 231-308 45-127 (129)
204 2kt5_A RNA and export factor-b 99.5 2.3E-13 7.9E-18 127.5 11.0 83 143-225 31-117 (124)
205 1h2v_Z 20 kDa nuclear CAP bind 99.5 2.2E-13 7.5E-18 132.6 11.3 82 143-224 35-121 (156)
206 1x4g_A Nucleolysin TIAR; struc 99.5 1.1E-13 3.9E-18 126.7 8.7 77 231-308 24-100 (109)
207 3ucg_A Polyadenylate-binding p 99.5 1.1E-13 3.7E-18 121.4 8.2 76 231-307 5-85 (89)
208 2fc9_A NCL protein; structure 99.5 1.4E-13 4.9E-18 124.0 9.1 79 230-308 13-92 (101)
209 3s7r_A Heterogeneous nuclear r 99.5 1.5E-13 5.2E-18 120.4 9.0 76 143-219 7-87 (87)
210 1wi8_A EIF-4B, eukaryotic tran 99.5 1.5E-13 5E-18 124.8 9.2 77 231-309 14-96 (104)
211 2kn4_A Immunoglobulin G-bindin 99.5 2.8E-13 9.5E-18 131.7 11.8 83 143-225 66-153 (158)
212 2e5j_A Methenyltetrahydrofolat 99.5 9.6E-14 3.3E-18 124.6 7.8 78 231-308 18-95 (97)
213 2dis_A Unnamed protein product 99.5 2E-13 6.7E-18 124.6 10.0 81 145-225 6-95 (109)
214 2la6_A RNA-binding protein FUS 99.5 1.6E-13 5.6E-18 123.3 9.4 75 231-305 12-99 (99)
215 2krb_A Eukaryotic translation 99.5 1.1E-13 3.9E-18 120.0 8.0 70 147-216 1-80 (81)
216 2i2y_A Fusion protein consists 99.5 2.7E-13 9.2E-18 131.1 11.5 81 143-223 69-149 (150)
217 1nu4_A U1A RNA binding domain; 99.4 1.1E-13 3.8E-18 123.5 8.0 80 231-310 7-92 (97)
218 1x4c_A Splicing factor, argini 99.4 1.7E-13 5.8E-18 125.7 9.3 76 231-308 14-94 (108)
219 2cqp_A RNA-binding protein 12; 99.4 1.6E-13 5.5E-18 122.9 9.0 77 231-307 14-95 (98)
220 2dgw_A Probable RNA-binding pr 99.4 2.3E-13 7.8E-18 120.4 9.8 79 143-223 6-88 (91)
221 2a3j_A U1 small nuclear ribonu 99.4 1.1E-13 3.8E-18 131.8 8.4 81 231-311 28-114 (127)
222 2ek1_A RNA-binding protein 12; 99.4 5.1E-14 1.7E-18 125.3 5.5 77 144-220 12-93 (95)
223 2rs2_A Musashi-1, RNA-binding 99.4 2.1E-13 7.2E-18 125.6 9.7 82 143-225 21-107 (109)
224 2dng_A Eukaryotic translation 99.4 2.2E-13 7.5E-18 123.4 9.6 77 231-309 14-95 (103)
225 3ulh_A THO complex subunit 4; 99.4 2.2E-13 7.7E-18 123.9 9.7 75 231-305 28-106 (107)
226 2fy1_A RNA-binding motif prote 99.4 1.1E-13 3.8E-18 128.9 7.8 78 231-308 6-87 (116)
227 2cpx_A Hypothetical protein FL 99.4 1.2E-13 4.1E-18 127.3 7.8 80 231-310 24-108 (115)
228 3ex7_B RNA-binding protein 8A; 99.4 1.4E-13 4.7E-18 129.1 8.3 80 231-310 21-105 (126)
229 2jwn_A Embryonic polyadenylate 99.4 4.8E-14 1.6E-18 131.8 5.0 76 231-307 35-115 (124)
230 2cqh_A IGF-II mRNA-binding pro 99.4 9.5E-14 3.2E-18 123.4 6.7 77 231-309 7-85 (93)
231 2kvi_A Nuclear polyadenylated 99.4 1.1E-13 3.8E-18 124.0 7.2 77 230-309 8-85 (96)
232 1h2v_Z 20 kDa nuclear CAP bind 99.4 2.3E-13 7.8E-18 132.5 9.9 80 231-310 38-122 (156)
233 1wg5_A Heterogeneous nuclear r 99.4 3.6E-13 1.2E-17 122.7 10.6 80 143-223 11-95 (104)
234 2cqd_A RNA-binding region cont 99.4 1.8E-13 6.2E-18 126.6 8.7 79 229-308 14-97 (116)
235 3zzy_A Polypyrimidine tract-bi 99.4 2.1E-13 7.1E-18 130.6 9.1 75 234-308 30-107 (130)
236 2hvz_A Splicing factor, argini 99.4 7.1E-14 2.4E-18 126.0 5.6 76 233-308 1-76 (101)
237 2ek1_A RNA-binding protein 12; 99.4 1.5E-13 5.2E-18 122.1 7.6 76 231-306 14-94 (95)
238 2dhg_A TRNA selenocysteine ass 99.4 1E-13 3.5E-18 125.4 6.5 80 231-310 8-93 (104)
239 1s79_A Lupus LA protein; RRM, 99.4 1.9E-13 6.6E-18 125.2 8.4 78 143-221 7-88 (103)
240 1x4b_A Heterogeneous nuclear r 99.4 1.6E-13 5.6E-18 126.9 7.9 80 145-225 25-109 (116)
241 1wg1_A KIAA1579 protein, homol 99.4 2.2E-13 7.4E-18 120.2 8.3 76 145-222 3-78 (88)
242 3lqv_A PRE-mRNA branch site pr 99.4 2.1E-13 7.2E-18 125.8 8.6 79 231-309 7-87 (115)
243 3n9u_C Cleavage and polyadenyl 99.4 1.5E-13 5E-18 135.2 7.9 77 146-222 54-137 (156)
244 3n9u_C Cleavage and polyadenyl 99.4 2.2E-13 7.4E-18 134.0 9.0 80 232-311 55-141 (156)
245 2div_A TRNA selenocysteine ass 99.4 1.3E-13 4.4E-18 123.7 6.8 78 231-308 8-95 (99)
246 2cq4_A RNA binding motif prote 99.4 1.2E-13 4.3E-18 127.3 6.9 78 144-222 22-104 (114)
247 2nlw_A Eukaryotic translation 99.4 2.2E-13 7.6E-18 124.4 8.2 77 231-307 14-100 (105)
248 1x4f_A Matrin 3; structural ge 99.4 1.1E-13 3.9E-18 129.2 6.4 77 231-308 24-103 (112)
249 1x4b_A Heterogeneous nuclear r 99.4 1.8E-13 6E-18 126.7 7.6 80 229-309 24-108 (116)
250 2kt5_A RNA and export factor-b 99.4 5.9E-13 2E-17 124.7 11.3 78 231-308 34-115 (124)
251 1fj7_A Nucleolin RBD1, protein 99.4 1.1E-13 3.7E-18 124.8 5.9 81 144-225 14-98 (101)
252 1x5p_A Negative elongation fac 99.4 5.1E-13 1.7E-17 119.8 10.1 75 231-308 14-88 (97)
253 2e44_A Insulin-like growth fac 99.4 6.1E-13 2.1E-17 118.6 10.5 79 145-223 13-93 (96)
254 1wg1_A KIAA1579 protein, homol 99.4 3E-13 1E-17 119.4 8.3 75 231-307 4-78 (88)
255 2cq2_A Hypothetical protein LO 99.4 4.3E-13 1.5E-17 125.7 9.8 80 143-223 21-107 (114)
256 2ki2_A SS-DNA binding protein 99.4 7.1E-14 2.4E-18 123.3 4.2 76 148-224 2-82 (90)
257 2mss_A Protein (musashi1); RNA 99.4 1.8E-13 6E-18 116.6 6.5 70 149-219 1-75 (75)
258 2dh8_A DAZ-associated protein 99.4 2E-13 7E-18 123.9 7.3 79 230-309 14-97 (105)
259 1sjr_A Polypyrimidine tract-bi 99.4 3.7E-13 1.3E-17 133.6 9.5 76 233-308 47-125 (164)
260 1x4e_A RNA binding motif, sing 99.4 1E-13 3.5E-18 120.9 4.9 76 231-306 4-84 (85)
261 1s79_A Lupus LA protein; RRM, 99.4 2.7E-13 9.3E-18 124.2 7.8 81 230-311 9-93 (103)
262 2rs2_A Musashi-1, RNA-binding 99.4 3.4E-13 1.2E-17 124.2 8.4 80 230-310 23-107 (109)
263 3s7r_A Heterogeneous nuclear r 99.4 5.3E-13 1.8E-17 116.9 9.3 74 230-304 9-87 (87)
264 2mss_A Protein (musashi1); RNA 99.4 2.1E-13 7.2E-18 116.2 6.5 70 234-304 1-75 (75)
265 1x5o_A RNA binding motif, sing 99.4 6.9E-13 2.4E-17 122.1 10.4 78 230-307 23-112 (114)
266 2diu_A KIAA0430 protein; struc 99.4 7.5E-13 2.6E-17 119.7 10.3 77 145-226 6-88 (96)
267 1rk8_A CG8781-PA, CG8781-PA pr 99.4 4.5E-13 1.6E-17 132.0 9.6 85 141-225 66-155 (165)
268 1uaw_A Mouse-musashi-1; RNP-ty 99.4 1.7E-13 5.7E-18 117.0 5.6 71 148-219 1-76 (77)
269 1sjr_A Polypyrimidine tract-bi 99.4 7.1E-13 2.4E-17 131.6 10.9 81 144-224 43-126 (164)
270 3egn_A RNA-binding protein 40; 99.4 5.6E-13 1.9E-17 127.9 9.9 81 144-224 42-132 (143)
271 2cpy_A RNA-binding protein 12; 99.4 4.4E-13 1.5E-17 124.2 8.6 82 231-313 14-100 (114)
272 2hgl_A HNRPF protein, heteroge 99.4 3.2E-13 1.1E-17 130.2 7.8 82 231-313 43-131 (136)
273 2j76_E EIF-4B, EIF4B, eukaryot 99.4 2.2E-13 7.6E-18 123.1 6.3 76 231-308 18-99 (100)
274 2e44_A Insulin-like growth fac 99.4 5.7E-13 1.9E-17 118.8 8.8 78 231-308 14-93 (96)
275 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 8.5E-13 2.9E-17 125.2 10.5 75 230-304 61-140 (140)
276 2ki2_A SS-DNA binding protein 99.4 1.3E-13 4.4E-18 121.6 4.4 75 233-308 2-81 (90)
277 2dis_A Unnamed protein product 99.4 3.5E-13 1.2E-17 122.9 7.4 79 231-309 7-94 (109)
278 2e5g_A U6 snRNA-specific termi 99.4 1.4E-12 4.7E-17 116.3 11.0 80 145-225 6-85 (94)
279 1fj7_A Nucleolin RBD1, protein 99.4 1.5E-13 5.2E-18 123.9 4.7 79 231-310 16-98 (101)
280 2jwn_A Embryonic polyadenylate 99.4 6.2E-13 2.1E-17 124.2 9.0 77 146-223 35-116 (124)
281 1wel_A RNA-binding protein 12; 99.4 4.9E-13 1.7E-17 125.5 8.3 79 143-222 21-104 (124)
282 3zzy_A Polypyrimidine tract-bi 99.4 6.7E-13 2.3E-17 127.1 9.3 79 146-224 27-108 (130)
283 2dgw_A Probable RNA-binding pr 99.4 7.4E-13 2.5E-17 117.1 8.9 76 231-308 9-88 (91)
284 2m2b_A RNA-binding protein 10; 99.4 1.8E-13 6.3E-18 129.8 5.3 78 230-308 21-109 (131)
285 2cpy_A RNA-binding protein 12; 99.4 3.3E-13 1.1E-17 125.1 6.7 79 143-222 11-94 (114)
286 2krb_A Eukaryotic translation 99.4 2.3E-13 7.9E-18 118.1 5.3 69 233-301 2-80 (81)
287 3d2w_A TAR DNA-binding protein 99.4 7.8E-13 2.7E-17 117.7 8.7 78 143-224 7-86 (89)
288 2db1_A Heterogeneous nuclear r 99.4 7.9E-13 2.7E-17 123.5 9.0 82 231-313 16-104 (118)
289 2cqg_A TDP-43, TAR DNA-binding 99.4 1.9E-12 6.3E-17 117.1 10.9 77 230-308 13-94 (103)
290 2e5i_A Heterogeneous nuclear r 99.4 9.3E-13 3.2E-17 125.1 9.0 74 234-308 27-103 (124)
291 2db1_A Heterogeneous nuclear r 99.4 4.6E-13 1.6E-17 125.1 6.7 78 144-222 14-98 (118)
292 1uaw_A Mouse-musashi-1; RNP-ty 99.4 3.6E-13 1.2E-17 115.0 5.5 71 233-304 1-76 (77)
293 1wel_A RNA-binding protein 12; 99.4 4.2E-13 1.4E-17 126.0 6.4 80 231-311 24-108 (124)
294 2hzc_A Splicing factor U2AF 65 99.4 1.1E-12 3.8E-17 114.5 8.5 72 145-218 4-86 (87)
295 2lcw_A RNA-binding protein FUS 99.1 5.2E-14 1.8E-18 130.4 0.0 83 143-225 3-98 (116)
296 2e5i_A Heterogeneous nuclear r 99.4 2.3E-12 8E-17 122.4 11.4 79 145-224 21-104 (124)
297 1wg5_A Heterogeneous nuclear r 99.4 1.3E-12 4.4E-17 119.1 9.0 77 231-308 14-95 (104)
298 1wez_A HnRNP H', FTP-3, hetero 99.4 9.5E-13 3.3E-17 120.1 8.1 78 144-223 12-93 (102)
299 2xs2_A Deleted in azoospermia- 99.4 2.5E-13 8.6E-18 122.6 4.2 82 142-225 4-89 (102)
300 3egn_A RNA-binding protein 40; 99.4 7.2E-13 2.5E-17 127.1 7.6 80 231-310 44-133 (143)
301 3d2w_A TAR DNA-binding protein 99.4 1.8E-12 6.1E-17 115.3 9.6 76 230-309 9-86 (89)
302 3tyt_A Heterogeneous nuclear r 99.4 1.5E-12 5E-17 133.3 10.1 76 231-306 3-79 (205)
303 2cq2_A Hypothetical protein LO 99.4 8.1E-13 2.8E-17 123.8 7.5 75 231-306 24-105 (114)
304 1wf0_A TDP-43, TAR DNA-binding 99.4 8.7E-13 3E-17 116.1 7.3 79 145-225 3-81 (88)
305 1iqt_A AUF1, heterogeneous nuc 99.3 5.6E-13 1.9E-17 113.4 5.4 70 149-219 1-75 (75)
306 2lmi_A GRSF-1, G-rich sequence 99.3 7.2E-13 2.5E-17 121.4 6.6 82 231-313 10-98 (107)
307 1fje_B Nucleolin RBD12, protei 99.3 1.8E-12 6.2E-17 126.7 9.3 80 143-222 95-174 (175)
308 3beg_B Splicing factor, argini 99.3 1.3E-12 4.5E-17 121.4 7.9 74 231-306 15-93 (115)
309 3beg_B Splicing factor, argini 99.3 1.6E-12 5.5E-17 120.8 8.2 76 145-222 14-94 (115)
310 3q2s_C Cleavage and polyadenyl 99.3 9.3E-13 3.2E-17 137.2 7.2 80 232-311 68-154 (229)
311 2hgl_A HNRPF protein, heteroge 99.3 1E-12 3.5E-17 126.6 6.7 78 143-221 40-124 (136)
312 2f3j_A RNA and export factor b 99.3 2.1E-12 7.1E-17 129.5 9.2 80 143-222 84-167 (177)
313 2e5g_A U6 snRNA-specific termi 99.3 1.7E-12 6E-17 115.7 7.7 77 231-308 7-83 (94)
314 3md3_A Nuclear and cytoplasmic 99.3 3.9E-12 1.3E-16 122.2 10.6 79 143-221 83-166 (166)
315 2lcw_A RNA-binding protein FUS 99.0 1.3E-13 4.3E-18 127.8 0.0 80 231-310 6-98 (116)
316 2bz2_A Negative elongation fac 99.3 2.9E-12 1E-16 120.6 9.1 79 143-224 35-113 (121)
317 3q2s_C Cleavage and polyadenyl 99.3 1.1E-12 3.9E-17 136.5 6.9 76 146-221 67-149 (229)
318 2diu_A KIAA0430 protein; struc 99.3 2.2E-12 7.5E-17 116.7 7.6 70 234-308 11-85 (96)
319 1wez_A HnRNP H', FTP-3, hetero 99.3 1.4E-12 4.9E-17 118.9 6.4 76 231-308 14-93 (102)
320 2lmi_A GRSF-1, G-rich sequence 99.3 9.8E-13 3.3E-17 120.5 5.3 78 144-222 8-92 (107)
321 2dnn_A RNA-binding protein 12; 99.3 4.4E-12 1.5E-16 117.6 9.6 75 232-308 16-94 (109)
322 1iqt_A AUF1, heterogeneous nuc 99.3 8.4E-13 2.9E-17 112.2 4.3 70 234-304 1-75 (75)
323 2dnn_A RNA-binding protein 12; 99.3 1.6E-12 5.6E-17 120.5 6.5 75 145-221 14-92 (109)
324 2hgn_A Heterogeneous nuclear r 99.3 6.2E-13 2.1E-17 128.6 3.8 121 184-309 1-125 (139)
325 1fxl_A Paraneoplastic encephal 99.3 5E-12 1.7E-16 121.6 10.0 77 232-308 2-83 (167)
326 2hzc_A Splicing factor U2AF 65 99.3 4.3E-12 1.5E-16 110.7 8.5 71 231-303 5-86 (87)
327 1b7f_A Protein (SXL-lethal pro 99.3 4.8E-12 1.6E-16 122.3 9.6 77 232-308 3-84 (168)
328 2voo_A Lupus LA protein; RNA-b 99.3 9.8E-12 3.4E-16 126.1 12.3 115 193-308 63-188 (193)
329 2qfj_A FBP-interacting repress 99.3 5.2E-12 1.8E-16 127.2 10.3 81 145-225 123-208 (216)
330 4f02_A Polyadenylate-binding p 99.3 4.1E-12 1.4E-16 129.6 9.4 78 146-223 102-182 (213)
331 2bz2_A Negative elongation fac 99.3 2.9E-12 1E-16 120.6 7.5 78 231-311 38-115 (121)
332 1wf0_A TDP-43, TAR DNA-binding 99.3 1.3E-12 4.4E-17 114.9 4.7 76 231-308 4-79 (88)
333 2hgn_A Heterogeneous nuclear r 99.3 1.7E-12 5.8E-17 125.6 5.7 80 143-224 42-125 (139)
334 2xs2_A Deleted in azoospermia- 99.3 2.7E-12 9.3E-17 115.8 5.9 77 230-308 7-87 (102)
335 2cjk_A Nuclear polyadenylated 99.3 5E-12 1.7E-16 122.3 8.0 77 145-222 85-166 (167)
336 2f3j_A RNA and export factor b 99.3 5.2E-12 1.8E-16 126.5 8.4 78 231-308 87-168 (177)
337 2yh0_A Splicing factor U2AF 65 99.3 7.6E-12 2.6E-16 124.3 9.5 81 144-224 111-196 (198)
338 2dit_A HIV TAT specific factor 99.3 1.9E-11 6.5E-16 112.9 11.3 83 143-225 11-105 (112)
339 2dha_A FLJ20171 protein; RRM d 99.3 2.5E-12 8.4E-17 121.9 5.4 81 232-313 23-111 (123)
340 2hgm_A HNRPF protein, heteroge 99.3 4.4E-12 1.5E-16 120.8 7.1 77 143-221 38-120 (126)
341 2dnl_A Cytoplasmic polyadenyla 99.3 1E-11 3.6E-16 114.9 9.4 73 145-220 6-86 (114)
342 2g4b_A Splicing factor U2AF 65 99.3 1.1E-11 3.7E-16 120.5 9.4 75 145-219 92-171 (172)
343 3u1l_A PRE-mRNA-splicing facto 99.3 7.3E-12 2.5E-16 131.5 8.6 82 143-225 130-232 (240)
344 2dha_A FLJ20171 protein; RRM d 99.3 3.4E-12 1.1E-16 121.0 5.5 76 145-221 21-104 (123)
345 1l3k_A Heterogeneous nuclear r 99.2 1E-11 3.5E-16 123.2 9.0 82 144-226 101-187 (196)
346 3u1l_A PRE-mRNA-splicing facto 99.2 8.7E-12 3E-16 131.0 8.8 102 207-309 109-231 (240)
347 3nmr_A Cugbp ELAV-like family 99.2 1.5E-11 5.1E-16 119.4 9.1 77 143-219 91-174 (175)
348 1qm9_A Polypyrimidine tract-bi 99.2 1.8E-11 6.1E-16 122.4 9.5 79 144-222 117-197 (198)
349 3pgw_S U1-70K; protein-RNA com 99.2 1.8E-11 6.2E-16 139.0 10.7 80 144-223 99-183 (437)
350 2adc_A Polypyrimidine tract-bi 99.2 2.8E-11 9.7E-16 124.8 10.8 79 144-222 148-228 (229)
351 2hgm_A HNRPF protein, heteroge 99.2 6.9E-12 2.3E-16 119.4 5.4 76 231-308 41-122 (126)
352 3pgw_A U1-A; protein-RNA compl 99.2 2.8E-11 9.7E-16 127.7 10.4 78 143-220 203-281 (282)
353 2dit_A HIV TAT specific factor 99.2 4E-11 1.4E-15 110.7 10.0 79 230-308 13-103 (112)
354 2pe8_A Splicing factor 45; RRM 99.2 4E-11 1.4E-15 110.4 9.5 78 231-308 7-95 (105)
355 2pe8_A Splicing factor 45; RRM 99.2 3.6E-11 1.2E-15 110.7 9.2 77 145-221 6-93 (105)
356 3sde_A Paraspeckle component 1 99.2 3.9E-11 1.3E-15 126.3 10.3 76 230-306 20-95 (261)
357 2dnl_A Cytoplasmic polyadenyla 99.2 3.8E-11 1.3E-15 111.1 7.9 77 231-310 7-91 (114)
358 2j8a_A Histone-lysine N-methyl 99.1 3E-11 1E-15 115.2 5.6 79 233-311 3-100 (136)
359 2voo_A Lupus LA protein; RNA-b 99.1 9.9E-11 3.4E-15 118.7 8.9 75 146-221 108-186 (193)
360 2j8a_A Histone-lysine N-methyl 99.1 5.5E-11 1.9E-15 113.4 5.8 73 148-220 3-94 (136)
361 3v4m_A Splicing factor U2AF 65 99.1 1.9E-10 6.5E-15 105.7 8.7 77 144-220 2-95 (105)
362 2d9o_A DNAJ (HSP40) homolog, s 99.1 1.9E-10 6.5E-15 105.2 8.0 65 242-308 27-91 (100)
363 3v4m_A Splicing factor U2AF 65 99.1 2.2E-10 7.7E-15 105.3 8.2 78 231-308 4-98 (105)
364 2d9o_A DNAJ (HSP40) homolog, s 99.0 1.1E-09 3.8E-14 100.1 11.7 76 147-224 10-92 (100)
365 3tht_A Alkylated DNA repair pr 99.0 4.1E-10 1.4E-14 124.1 9.3 76 143-219 14-96 (345)
366 1jmt_A Splicing factor U2AF 35 99.0 1.4E-10 4.6E-15 106.5 3.7 68 237-304 20-103 (104)
367 3ue2_A Poly(U)-binding-splicin 99.0 6.8E-10 2.3E-14 104.4 8.5 76 145-220 18-107 (118)
368 3tht_A Alkylated DNA repair pr 99.0 6.3E-10 2.1E-14 122.6 8.7 75 230-305 16-97 (345)
369 1jmt_A Splicing factor U2AF 35 99.0 2.6E-10 8.9E-15 104.6 3.6 68 152-219 20-103 (104)
370 3s6e_A RNA-binding protein 39; 99.0 1.5E-09 5.2E-14 101.5 8.9 81 231-311 6-97 (114)
371 3ue2_A Poly(U)-binding-splicin 98.9 1.6E-09 5.5E-14 101.9 8.1 77 231-307 19-109 (118)
372 1uw4_A UPF3X; nonsense mediate 98.9 2.6E-09 8.9E-14 96.1 8.6 84 684-769 2-88 (91)
373 3s6e_A RNA-binding protein 39; 98.9 5.8E-09 2E-13 97.5 9.2 77 144-220 4-91 (114)
374 2l08_A Regulator of nonsense t 98.8 3.2E-09 1.1E-13 96.3 3.8 84 684-769 10-96 (97)
375 2dnr_A Synaptojanin-1; RRM dom 98.7 4.9E-08 1.7E-12 87.5 8.0 74 231-308 6-87 (91)
376 1owx_A Lupus LA protein, SS-B, 98.6 8.8E-08 3E-12 90.5 9.0 80 231-311 17-100 (121)
377 2dnr_A Synaptojanin-1; RRM dom 98.4 3.2E-07 1.1E-11 82.3 7.4 74 145-222 5-86 (91)
378 1owx_A Lupus LA protein, SS-B, 98.4 9E-07 3.1E-11 83.6 9.6 76 143-219 14-93 (121)
379 1ufw_A Synaptojanin 2; RNP dom 98.4 3.6E-07 1.2E-11 82.4 6.3 73 230-306 13-94 (95)
380 3dxb_A Thioredoxin N-terminall 98.3 8E-07 2.8E-11 90.9 7.1 66 243-308 140-214 (222)
381 1ufw_A Synaptojanin 2; RNP dom 98.2 2.5E-06 8.7E-11 76.9 6.5 73 144-220 12-93 (95)
382 3dxb_A Thioredoxin N-terminall 98.1 3.4E-06 1.2E-10 86.2 7.3 74 147-220 124-211 (222)
383 2l9w_A U4/U6 snRNA-associated- 97.9 2.2E-05 7.6E-10 72.5 8.0 71 232-303 21-96 (117)
384 2l9w_A U4/U6 snRNA-associated- 97.6 0.00017 5.6E-09 66.7 8.3 71 146-217 20-95 (117)
385 2dhx_A Poly (ADP-ribose) polym 97.3 0.0014 4.7E-08 60.0 10.9 88 146-245 7-99 (104)
386 2dhx_A Poly (ADP-ribose) polym 96.9 0.0029 1E-07 57.8 8.6 78 232-313 8-90 (104)
387 1wey_A Calcipressin 1; structu 96.9 0.0013 4.4E-08 60.3 5.9 75 147-222 5-84 (104)
388 1wey_A Calcipressin 1; structu 96.7 0.0015 5.1E-08 59.9 4.9 75 233-308 6-85 (104)
389 1wwh_A Nucleoporin 35, nucleop 96.0 0.022 7.4E-07 53.5 8.6 77 231-310 23-100 (119)
390 1whv_A Poly(A)-specific ribonu 95.6 0.039 1.3E-06 50.0 8.4 54 148-205 17-70 (100)
391 1uw4_A UPF3X; nonsense mediate 95.6 0.041 1.4E-06 49.3 8.4 72 233-304 2-85 (91)
392 1wwh_A Nucleoporin 35, nucleop 94.4 0.12 4.2E-06 48.4 8.3 70 146-218 23-93 (119)
393 2l08_A Regulator of nonsense t 93.7 0.19 6.6E-06 45.5 8.0 72 233-304 10-93 (97)
394 1whv_A Poly(A)-specific ribonu 93.2 0.18 6.1E-06 45.7 6.8 53 234-290 18-70 (100)
395 3pq1_A Poly(A) RNA polymerase; 92.8 0.041 1.4E-06 62.8 2.7 57 145-202 51-107 (464)
396 3ctr_A Poly(A)-specific ribonu 92.6 0.11 3.6E-06 47.3 4.5 53 234-290 8-60 (101)
397 3p3d_A Nucleoporin 53; structu 92.4 0.17 5.9E-06 48.1 5.9 72 233-306 8-98 (132)
398 3ctr_A Poly(A)-specific ribonu 92.2 0.095 3.3E-06 47.6 3.6 54 148-205 7-60 (101)
399 3pq1_A Poly(A) RNA polymerase; 91.7 0.071 2.4E-06 60.8 2.8 56 231-287 52-107 (464)
400 3p3d_A Nucleoporin 53; structu 87.8 0.47 1.6E-05 45.2 4.5 70 148-219 8-96 (132)
401 3d45_A Poly(A)-specific ribonu 72.1 7.8 0.00027 44.6 8.4 55 147-205 440-494 (507)
402 3d45_A Poly(A)-specific ribonu 63.3 11 0.00037 43.4 7.2 54 234-291 442-495 (507)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=5.7e-30 Score=262.21 Aligned_cols=167 Identities=17% Similarity=0.317 Sum_probs=147.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeee
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~ 217 (854)
...|.+||||+|||+++++++|+++|++||+|.+|+. +++++|||||+|.+.++|++|++.+++..+.|+.|++.
T Consensus 11 p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 11 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 3457899999999999999999999999999999872 57889999999999999999999999999999999999
Q ss_pred ecCCCCCCCcccccccceeeecCCCCCCHHHHhhhhcccCceeEeee---cCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 003036 218 YSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE---TPQKIHQKYIEFYDTRAAEAALRELNSRYI 294 (854)
Q Consensus 218 ~a~pk~~~~~~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri---t~~skG~AFVeF~d~e~A~kAl~~LNG~~I 294 (854)
++...... ......+|||+|||..+++++|+++|++||.|.+|++ ...++|||||+|.+.++|.+|++.|||..|
T Consensus 91 ~~~~~~~~--~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~ 168 (213)
T 4f02_A 91 WSQRDPSL--RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 168 (213)
T ss_dssp ECCCCTHH--HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred cccccccc--cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 98654322 2234568999999999999999999999999999887 344689999999999999999999999999
Q ss_pred CCeEEEEEeccCchhhh
Q 003036 295 AGKQIKLEPSHLRGLRK 311 (854)
Q Consensus 295 ~Gk~IkV~~a~pk~~Rr 311 (854)
.|++|+|.+++++.+|+
T Consensus 169 ~g~~i~V~~a~~~~~~~ 185 (213)
T 4f02_A 169 NDRKVFVGRFKSRKERE 185 (213)
T ss_dssp TTEECEEEECCCHHHHH
T ss_pred CCEEEEEEEcCCCcccc
Confidence 99999999999987665
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.7e-29 Score=239.58 Aligned_cols=157 Identities=16% Similarity=0.280 Sum_probs=142.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCCC
Q 003036 148 RTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKD 223 (854)
Q Consensus 148 rtLfVgNLP~~vTEedL~elFsqfG~I~sv~~----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk~ 223 (854)
|+|||+|||+++++++|+++|++||+|..++. .++++|||||+|.+.++|++|++.|++..+.|+.|.|.++.++.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 69999999999999999999999999999883 46689999999999999999999999999999999999987765
Q ss_pred CCCcccccccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 003036 224 NPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQ 298 (854)
Q Consensus 224 ~~~~~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~ 298 (854)
.. ......+|||+|||..+++++|+++|++||.|..+++ ++.++|+|||+|.+.++|.+|++.|||..+.|++
T Consensus 81 ~~--~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 158 (166)
T 3md3_A 81 QS--SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 158 (166)
T ss_dssp CC--CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CC--CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Confidence 43 2335569999999999999999999999999999877 3556899999999999999999999999999999
Q ss_pred EEEEeccC
Q 003036 299 IKLEPSHL 306 (854)
Q Consensus 299 IkV~~a~p 306 (854)
|+|.|+++
T Consensus 159 i~v~~a~~ 166 (166)
T 3md3_A 159 LRINWAAK 166 (166)
T ss_dssp CEEEESCC
T ss_pred EEEEecCC
Confidence 99999864
No 3
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.96 E-value=2.9e-28 Score=236.79 Aligned_cols=155 Identities=23% Similarity=0.419 Sum_probs=142.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecC
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~ 220 (854)
++++|||+|||+++++++|+++|++||+|..++. +++++|||||+|.+.++|++|++.|++..+.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 5789999999999999999999999999999982 56688999999999999999999999999999999999998
Q ss_pred CCCCCCcccccccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 003036 221 PKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIA 295 (854)
Q Consensus 221 pk~~~~~~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~ 295 (854)
++... ....+|||+|||..+++++|+++|++||.|..+++ ++.++|+|||+|.+.++|.+|++.|||..+.
T Consensus 82 ~~~~~----~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 157 (168)
T 1b7f_A 82 PGGES----IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPE 157 (168)
T ss_dssp CCSST----TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred CCccc----CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEec
Confidence 76543 34578999999999999999999999999999877 3455799999999999999999999999998
Q ss_pred C--eEEEEEec
Q 003036 296 G--KQIKLEPS 304 (854)
Q Consensus 296 G--k~IkV~~a 304 (854)
| ++|+|.||
T Consensus 158 g~~~~l~V~~A 168 (168)
T 1b7f_A 158 GGSQPLSVRLA 168 (168)
T ss_dssp TCSSCCEEEEC
T ss_pred CCCeEEEEEeC
Confidence 8 99999986
No 4
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.96 E-value=4e-28 Score=234.78 Aligned_cols=155 Identities=23% Similarity=0.408 Sum_probs=140.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecC
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~ 220 (854)
++++|||+|||+++++++|+++|++||+|..++. +++++|||||+|.+.++|++|++.|++..+.|++|+|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 4689999999999999999999999999999883 67788999999999999999999999999999999999988
Q ss_pred CCCCCCcccccccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 003036 221 PKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIA 295 (854)
Q Consensus 221 pk~~~~~~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~ 295 (854)
++.. .....+|||+|||..+++++|+++|++||.|..+++ ++.++|+|||+|.+.++|.+|++.|||..+.
T Consensus 81 ~~~~----~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 156 (167)
T 1fxl_A 81 PSSA----SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPS 156 (167)
T ss_dssp CCCG----GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred CCcc----cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccC
Confidence 6543 234568999999999999999999999999999887 3446899999999999999999999999999
Q ss_pred Ce--EEEEEec
Q 003036 296 GK--QIKLEPS 304 (854)
Q Consensus 296 Gk--~IkV~~a 304 (854)
|+ +|+|.||
T Consensus 157 g~~~~i~v~~A 167 (167)
T 1fxl_A 157 GATEPITVKFA 167 (167)
T ss_dssp TCSSCCEEEEC
T ss_pred CCccceEEEeC
Confidence 96 4888886
No 5
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.95 E-value=4.5e-28 Score=241.59 Aligned_cols=169 Identities=14% Similarity=0.288 Sum_probs=140.6
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceee
Q 003036 141 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 215 (854)
Q Consensus 141 p~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~ 215 (854)
+....+.++|||+|||+++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++. ++..+.|+.|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~ 85 (196)
T 1l3k_A 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVE 85 (196)
T ss_dssp -CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEee
Confidence 345567899999999999999999999999999999882 467899999999999999999975 89999999999
Q ss_pred eeecCCCCCCCc--ccccccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHH
Q 003036 216 IHYSIPKDNPSE--KEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRE 288 (854)
Q Consensus 216 V~~a~pk~~~~~--~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~ 288 (854)
|.++.++..... ......+|||+|||..+++++|+++|+.||.|..|++ ++.++|||||+|.+.++|.+|++.
T Consensus 86 v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 165 (196)
T 1l3k_A 86 PKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165 (196)
T ss_dssp EEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred eecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh
Confidence 999876644322 1224569999999999999999999999999999877 355789999999999999999986
Q ss_pred hCCceeCCeEEEEEeccCchhhh
Q 003036 289 LNSRYIAGKQIKLEPSHLRGLRK 311 (854)
Q Consensus 289 LNG~~I~Gk~IkV~~a~pk~~Rr 311 (854)
+|..|.|++|+|.|+.++.+.+
T Consensus 166 -~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 166 -KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp -SCCEETTEECEEEECC------
T ss_pred -CCcEECCEEEEEEecCChhHhc
Confidence 8999999999999999987554
No 6
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.95 E-value=2.1e-28 Score=240.39 Aligned_cols=162 Identities=20% Similarity=0.251 Sum_probs=144.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEE----EeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeee
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTF----YRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv----~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~ 218 (854)
...+.++|||+|||+++++++|+++|++||.|..+ ..+++++|||||+|.+.++|++|+ +|++..+.|++|+|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEec
Confidence 34578999999999999999999999999865431 145789999999999999999999 5999999999999999
Q ss_pred cCCCCCCCcccccccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 003036 219 SIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQ 298 (854)
Q Consensus 219 a~pk~~~~~~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~ 298 (854)
+.++.... .....+|||+|||..+++++|+++|++||.|..+..++.++|||||+|.+.++|.+|++.|||..|.|++
T Consensus 88 ~~~~~~~~--~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 165 (175)
T 1fje_B 88 PKGRDSKK--VRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 165 (175)
T ss_dssp CCCSSCST--TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEE
T ss_pred CCCccccc--cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 98765432 3356799999999999999999999999999988557788999999999999999999999999999999
Q ss_pred EEEEeccCc
Q 003036 299 IKLEPSHLR 307 (854)
Q Consensus 299 IkV~~a~pk 307 (854)
|+|+|++++
T Consensus 166 i~v~~a~~k 174 (175)
T 1fje_B 166 VSLYYTGEK 174 (175)
T ss_dssp EEEEECSSC
T ss_pred EEEEecCCC
Confidence 999999876
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.95 E-value=7e-28 Score=243.79 Aligned_cols=165 Identities=15% Similarity=0.279 Sum_probs=144.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeee
Q 003036 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (854)
Q Consensus 144 e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~ 218 (854)
..+.++|||+|||+++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|++..+.|+.|.|.+
T Consensus 25 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 104 (216)
T 2qfj_A 25 LAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 104 (216)
T ss_dssp HHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEEC
T ss_pred cCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEec
Confidence 345789999999999999999999999999999984 567899999999999999999999999999999999998
Q ss_pred cCCCCCCCc-------ccccccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHH
Q 003036 219 SIPKDNPSE-------KEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAAL 286 (854)
Q Consensus 219 a~pk~~~~~-------~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl 286 (854)
+..+..... ......+|||+|||..+++++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 184 (216)
T 2qfj_A 105 PSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAV 184 (216)
T ss_dssp CSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred CCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHH
Confidence 765532211 1124469999999999999999999999999999887 3456899999999999999999
Q ss_pred HHhCCceeCCeEEEEEeccCch
Q 003036 287 RELNSRYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 287 ~~LNG~~I~Gk~IkV~~a~pk~ 308 (854)
+.|||..|.|++|+|.|+.++.
T Consensus 185 ~~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 185 SSMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp HHHTTCBCSSSBCEEEECSSCS
T ss_pred HHccCCEeCCcEEEEEEecCCC
Confidence 9999999999999999998753
No 8
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.95 E-value=1.5e-27 Score=246.78 Aligned_cols=165 Identities=20% Similarity=0.226 Sum_probs=147.5
Q ss_pred CCCCCcEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCC
Q 003036 143 DEHPSRTLLLRKINS-NIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 221 (854)
Q Consensus 143 ~e~psrtLfVgNLP~-~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~p 221 (854)
...++++|||+|||+ ++++++|+++|++||.|..|+.....+|||||+|.+.++|++|++.|++..+.|++|+|.++.+
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 446789999999999 9999999999999999999996555689999999999999999999999999999999999876
Q ss_pred CCCCCcc-------------------------------cccccceeeecCCCCCCHHHHhhhhcccC-ceeEeeecCCcc
Q 003036 222 KDNPSEK-------------------------------EINQGTLVVFNLDSSVSNDELHHIFGVYG-EIKEIRETPQKI 269 (854)
Q Consensus 222 k~~~~~~-------------------------------~~~~~tLfV~NLp~svTeedLreiFs~fG-~I~~Vrit~~sk 269 (854)
+.....+ ..+..+|||+|||..+++++|+++|++|| .|..|++....+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~ 189 (229)
T 2adc_A 110 QNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDR 189 (229)
T ss_dssp CCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSST
T ss_pred ccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCC
Confidence 5211100 11246899999999999999999999999 999999977779
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEEeccCc
Q 003036 270 HQKYIEFYDTRAAEAALRELNSRYIA-GKQIKLEPSHLR 307 (854)
Q Consensus 270 G~AFVeF~d~e~A~kAl~~LNG~~I~-Gk~IkV~~a~pk 307 (854)
++|||+|.+.++|.+|++.|||..+. |++|+|.|++++
T Consensus 190 g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 190 KMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred cEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 99999999999999999999999999 999999999874
No 9
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.95 E-value=1.7e-27 Score=252.33 Aligned_cols=163 Identities=23% Similarity=0.365 Sum_probs=145.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH----HHhhccCCeEEEEe--CccccceEEEeeCCHHHHHHHHHHhcceecCCceeee
Q 003036 143 DEHPSRTLLLRKINSNIEDSELK----ALFEQYGDVRTFYR--ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~----elFsqfG~I~sv~~--tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V 216 (854)
+..++++|||+|||+++++++|+ ++|++||.|..|+. +++++|||||+|.+.++|++|++.|+|..|.|+.|+|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 45678999999999999999976 89999999999983 6789999999999999999999999999999999999
Q ss_pred eecCCCCCCC----------------------------------------------------------------------
Q 003036 217 HYSIPKDNPS---------------------------------------------------------------------- 226 (854)
Q Consensus 217 ~~a~pk~~~~---------------------------------------------------------------------- 226 (854)
.|+..+....
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 9987654210
Q ss_pred -------------------------------------cccccccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcc
Q 003036 227 -------------------------------------EKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKI 269 (854)
Q Consensus 227 -------------------------------------~~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~sk 269 (854)
.......+|||+|||..+++++|+++|++||.|++|++....+
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~ 244 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRH 244 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCC
Confidence 0111345799999999999999999999999999999976667
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEEecc
Q 003036 270 HQKYIEFYDTRAAEAALRELNSRYIA-GKQIKLEPSH 305 (854)
Q Consensus 270 G~AFVeF~d~e~A~kAl~~LNG~~I~-Gk~IkV~~a~ 305 (854)
|||||+|.+.++|.+|++.|||..|. |++|+|+|++
T Consensus 245 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 245 DIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred cEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 99999999999999999999999999 9999999986
No 10
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.95 E-value=2e-27 Score=232.18 Aligned_cols=154 Identities=16% Similarity=0.272 Sum_probs=140.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcc----C-------CeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCce
Q 003036 145 HPSRTLLLRKINSNIEDSELKALFEQY----G-------DVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGK 213 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~elFsqf----G-------~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~ 213 (854)
+++++|||+|||+++++++|+++|++| | .|..++. ++++|||||+|.+.++|++|+ .|++..+.|++
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~-~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~ 79 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 79 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE-ETTTTEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe-cCCCCEEEEEeCCHHHHHHHH-HhCCcEecCce
Confidence 357999999999999999999999999 7 7787776 678999999999999999999 89999999999
Q ss_pred eeeeecCCCCCCCcccccccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHH
Q 003036 214 LDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRE 288 (854)
Q Consensus 214 L~V~~a~pk~~~~~~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~ 288 (854)
|+|.++.+.... ....+|||+|||..+++++|+++|++||.|..|++ ++.++|+|||+|.+.++|.+|++.
T Consensus 80 i~v~~~~~~~~~----~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (172)
T 2g4b_A 80 LKIRRPHDYQPL----PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 155 (172)
T ss_dssp CEEECCSSCCCC----TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHH
T ss_pred eeecCCcccCCC----CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 999987654332 23579999999999999999999999999999887 455689999999999999999999
Q ss_pred hCCceeCCeEEEEEec
Q 003036 289 LNSRYIAGKQIKLEPS 304 (854)
Q Consensus 289 LNG~~I~Gk~IkV~~a 304 (854)
|||..+.|++|+|+||
T Consensus 156 l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 156 LNGMQLGDKKLLVQRA 171 (172)
T ss_dssp HTTCEETTEECEEEEC
T ss_pred cCCCEECCeEEEEEeC
Confidence 9999999999999997
No 11
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.95 E-value=5.7e-28 Score=234.88 Aligned_cols=155 Identities=17% Similarity=0.324 Sum_probs=139.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecC
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~ 220 (854)
++++|||+|||+++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++. +..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 5789999999999999999999999999999982 577899999999999999999984 578999999999987
Q ss_pred CCCCCCcccccccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 003036 221 PKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIA 295 (854)
Q Consensus 221 pk~~~~~~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~ 295 (854)
++. ......+|||+|||..+++++|+++|++||.|.++++ ++.++|||||+|.+.++|.+|++ ++|..+.
T Consensus 80 ~~~----~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~ 154 (167)
T 2cjk_A 80 PRD----EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFK 154 (167)
T ss_dssp CHH----HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSS
T ss_pred chh----hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeC
Confidence 542 2234569999999999999999999999999999887 35568999999999999999998 8999999
Q ss_pred CeEEEEEeccCc
Q 003036 296 GKQIKLEPSHLR 307 (854)
Q Consensus 296 Gk~IkV~~a~pk 307 (854)
|++|+|.|+.++
T Consensus 155 g~~i~V~~a~pk 166 (167)
T 2cjk_A 155 DRKIEIKRAEPR 166 (167)
T ss_dssp SSCEEEEECCCC
T ss_pred CeEEEEeecCCC
Confidence 999999999886
No 12
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.95 E-value=3.8e-27 Score=230.00 Aligned_cols=157 Identities=16% Similarity=0.316 Sum_probs=137.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----Cc--cccceEEEeeCCHHHHHHHHHHhcceecC---Cceee
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----AS--KHCGFVTISYYDIRAARNAMKSLQNKLTR---SGKLD 215 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tg--ksKGfAFVeF~d~edA~kAl~~Lng~~L~---Gr~L~ 215 (854)
.+++|||+|||+++++++|+++|++||+|..++. ++ +++|||||+|.+.++|++|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 4689999999999999999999999999999882 22 78999999999999999999999998775 67788
Q ss_pred eeecCCCCCCCcccccccceeeecCCCCCCHHHHhhhhcccCceeEeee----cCCcccEEEEEeCCHHHHHHHHHHhCC
Q 003036 216 IHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNS 291 (854)
Q Consensus 216 V~~a~pk~~~~~~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri----t~~skG~AFVeF~d~e~A~kAl~~LNG 291 (854)
+.++.++... .....+|||+|||..+++++|+++|++||.|.+|++ ++.++|||||+|.+.++|.+|++.|||
T Consensus 82 ~~~~~~~~~~---~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 3nmr_A 82 MKPADSEKNN---AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQ 158 (175)
T ss_dssp EEECGGGCCS---CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred Eccccccccc---cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcC
Confidence 8777654432 235579999999999999999999999999999887 344689999999999999999999999
Q ss_pred ceeC---CeEEEEEecc
Q 003036 292 RYIA---GKQIKLEPSH 305 (854)
Q Consensus 292 ~~I~---Gk~IkV~~a~ 305 (854)
..+. +++|+|.|+.
T Consensus 159 ~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 159 AQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SCCCTTCSSCCEEEECC
T ss_pred CcccCCCCCCeEEEecC
Confidence 8776 4999999973
No 13
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=3.1e-27 Score=235.91 Aligned_cols=161 Identities=15% Similarity=0.253 Sum_probs=142.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcc----C-------CeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCcee
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQY----G-------DVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKL 214 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsqf----G-------~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L 214 (854)
.+++|||+|||+++++++|+++|++| | .|..+.. ++++|||||+|.+.++|++|+ .|++..+.|++|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i 80 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-ETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-cCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceE
Confidence 57999999999999999999999999 5 6777766 778999999999999999999 899999999999
Q ss_pred eeeecCCCCCCCc----------------ccccccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEE
Q 003036 215 DIHYSIPKDNPSE----------------KEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKY 273 (854)
Q Consensus 215 ~V~~a~pk~~~~~----------------~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AF 273 (854)
+|.++.++..... ......+|||+|||..+++++|+++|++||.|..|++ ++.++||||
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~af 160 (198)
T 2yh0_A 81 KIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAF 160 (198)
T ss_dssp EEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEE
T ss_pred EEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEE
Confidence 9999876532110 1124569999999999999999999999999999887 344589999
Q ss_pred EEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCch
Q 003036 274 IEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 274 VeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~ 308 (854)
|+|.+.++|.+|++.|||..|.|++|+|.|++++.
T Consensus 161 V~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 161 CEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred EEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 99999999999999999999999999999998865
No 14
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.95 E-value=2.3e-27 Score=238.23 Aligned_cols=161 Identities=20% Similarity=0.238 Sum_probs=144.8
Q ss_pred CcEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCCCCC
Q 003036 147 SRTLLLRKINS-NIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDNP 225 (854)
Q Consensus 147 srtLfVgNLP~-~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk~~~ 225 (854)
+++|||+|||+ ++++++|+++|++||.|..|+.....+|||||+|.+.++|++|++.|++..+.|++|+|.++.++...
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 82 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQ 82 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcC
Confidence 58999999999 99999999999999999999965556899999999999999999999999999999999998755211
Q ss_pred Ccc-------------------------------cccccceeeecCCCCCCHHHHhhhhcccC-ceeEeeecCCcccEEE
Q 003036 226 SEK-------------------------------EINQGTLVVFNLDSSVSNDELHHIFGVYG-EIKEIRETPQKIHQKY 273 (854)
Q Consensus 226 ~~~-------------------------------~~~~~tLfV~NLp~svTeedLreiFs~fG-~I~~Vrit~~skG~AF 273 (854)
..+ ..+..+|||+|||..+++++|+++|++|| .|.+|++....+|+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~af 162 (198)
T 1qm9_A 83 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMAL 162 (198)
T ss_dssp CSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEE
T ss_pred CCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEE
Confidence 100 11356899999999999999999999999 9999999777799999
Q ss_pred EEeCCHHHHHHHHHHhCCceeC-CeEEEEEeccCc
Q 003036 274 IEFYDTRAAEAALRELNSRYIA-GKQIKLEPSHLR 307 (854)
Q Consensus 274 VeF~d~e~A~kAl~~LNG~~I~-Gk~IkV~~a~pk 307 (854)
|+|.+.++|.+|++.|||..+. |++|+|.|++++
T Consensus 163 V~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 163 IQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp EECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 9999999999999999999999 999999999864
No 15
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.95 E-value=6e-27 Score=240.11 Aligned_cols=159 Identities=18% Similarity=0.202 Sum_probs=137.1
Q ss_pred CCcEEEEcCCC-CCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCCCC
Q 003036 146 PSRTLLLRKIN-SNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDN 224 (854)
Q Consensus 146 psrtLfVgNLP-~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk~~ 224 (854)
++++|||+||| +.+++++|+++|++||.|.+|+.....+|||||+|.+.++|++|++.|||..+.|++|+|.++..+..
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~ 82 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAI 82 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCcc
Confidence 57899999999 89999999999999999999997666799999999999999999999999999999999999864321
Q ss_pred CCc------------c---------------------cccccceeeecCCCCCCHHHHhhhhcccCce--eEeeecC---
Q 003036 225 PSE------------K---------------------EINQGTLVVFNLDSSVSNDELHHIFGVYGEI--KEIRETP--- 266 (854)
Q Consensus 225 ~~~------------~---------------------~~~~~tLfV~NLp~svTeedLreiFs~fG~I--~~Vrit~--- 266 (854)
... + ..+..+|||+|||+++++++|+++|++||.| .+|++..
T Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~ 162 (205)
T 3tyt_A 83 MPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKS 162 (205)
T ss_dssp CCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCS
T ss_pred CCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCC
Confidence 000 0 0123479999999999999999999999999 7888732
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCceeCCe----EEEEEec
Q 003036 267 QKIHQKYIEFYDTRAAEAALRELNSRYIAGK----QIKLEPS 304 (854)
Q Consensus 267 ~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk----~IkV~~a 304 (854)
.++|+|||+|.+.++|.+||..|||..|.|+ ++.|.|+
T Consensus 163 ~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 163 ERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 3469999999999999999999999999885 5666664
No 16
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.94 E-value=8.2e-27 Score=247.25 Aligned_cols=170 Identities=15% Similarity=0.185 Sum_probs=151.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeec
Q 003036 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a 219 (854)
.+.++|||+|||+++++++|+++|++||.|..++ .+++++|||||+|.+.++|.+|++.|++..+.|++|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 3568999999999999999999999999999887 25778999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccccceeeecCCCCC-CHHHHhhhhcccCceeEeee----cCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 003036 220 IPKDNPSEKEINQGTLVVFNLDSSV-SNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYI 294 (854)
Q Consensus 220 ~pk~~~~~~~~~~~tLfV~NLp~sv-TeedLreiFs~fG~I~~Vri----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I 294 (854)
.++.... ......+|||+|||..+ ++++|+++|+.||.|.+|++ ++.++|+|||+|.+.++|.+|++.|||..|
T Consensus 173 ~~~~~~~-~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 251 (284)
T 3smz_A 173 DAGQLTP-ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSL 251 (284)
T ss_dssp CGGGCCT-TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCCCCc-ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Confidence 8765432 22355789999999996 99999999999999999876 345689999999999999999999999999
Q ss_pred CCeEEEEEeccCchhhh-Hhhh
Q 003036 295 AGKQIKLEPSHLRGLRK-CLAN 315 (854)
Q Consensus 295 ~Gk~IkV~~a~pk~~Rr-~l~q 315 (854)
.|++|+|.|+.++..++ ++++
T Consensus 252 ~g~~l~v~~a~~~~~~~~~~~~ 273 (284)
T 3smz_A 252 GGSHLRVSFCAPGPPGRSMLAA 273 (284)
T ss_dssp TTEECEEEECCSSSCHHHHHHH
T ss_pred CCeEEEEEEecCCCcccchhhh
Confidence 99999999999998776 4433
No 17
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.93 E-value=1.8e-25 Score=237.89 Aligned_cols=161 Identities=16% Similarity=0.240 Sum_probs=141.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEe----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecC
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQYG-DVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsqfG-~I~sv~~----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~ 220 (854)
..++|||+|||+++++++|+++|++|| .|..|+. .++++|||||+|.+.++|.+|++.|++..+.|++|.|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 9999983 35689999999999999999999999999999999999998
Q ss_pred CCCCCCc---ccccccceeeecCCCC-CCHHHHhhhhcccCceeEeeec------CCcccEEEEEeCCHHHHHHHHHHhC
Q 003036 221 PKDNPSE---KEINQGTLVVFNLDSS-VSNDELHHIFGVYGEIKEIRET------PQKIHQKYIEFYDTRAAEAALRELN 290 (854)
Q Consensus 221 pk~~~~~---~~~~~~tLfV~NLp~s-vTeedLreiFs~fG~I~~Vrit------~~skG~AFVeF~d~e~A~kAl~~LN 290 (854)
++..... ......+|||+|||.. +++++|+++|+.||.|..|++. +.++|||||+|.+.++|.+|+ .||
T Consensus 196 ~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~ 274 (292)
T 2ghp_A 196 PLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMN 274 (292)
T ss_dssp CC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGT
T ss_pred CCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hhc
Confidence 7754432 2234569999999999 9999999999999999999882 566899999999999999999 999
Q ss_pred CceeCCeEEEEEeccCc
Q 003036 291 SRYIAGKQIKLEPSHLR 307 (854)
Q Consensus 291 G~~I~Gk~IkV~~a~pk 307 (854)
|..|.|++|+|.|++++
T Consensus 275 g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 275 RSLLGNREISVSLADKK 291 (292)
T ss_dssp TEEETTEEEEEEECCCC
T ss_pred CCEECCcEEEEEEecCC
Confidence 99999999999999886
No 18
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.93 E-value=4.2e-25 Score=234.13 Aligned_cols=152 Identities=16% Similarity=0.285 Sum_probs=140.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCCCC
Q 003036 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDN 224 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk~~ 224 (854)
.++++|||+|||+++++++|+++|++|| |..++. ++++|||||+|.+.++|++|++.|++..+.|++|.|.++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~---- 93 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV-DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP---- 93 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE-ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE-ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC----
Confidence 3678999999999999999999999999 999887 8899999999999999999999999999999999999854
Q ss_pred CCcccccccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 003036 225 PSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQI 299 (854)
Q Consensus 225 ~~~~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~I 299 (854)
...+|||+|||..+++++|+++|+.||.|..+++ ++.++|||||+|.+.++|.+|++.|+|..+.|++|
T Consensus 94 ------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i 167 (284)
T 3smz_A 94 ------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTL 167 (284)
T ss_dssp ------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred ------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 2368999999999999999999999999999876 45568999999999999999999999999999999
Q ss_pred EEEeccCch
Q 003036 300 KLEPSHLRG 308 (854)
Q Consensus 300 kV~~a~pk~ 308 (854)
+|.|+.++.
T Consensus 168 ~v~~a~~~~ 176 (284)
T 3smz_A 168 YVHWTDAGQ 176 (284)
T ss_dssp EEEECCGGG
T ss_pred EEEECCCCC
Confidence 999997643
No 19
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.93 E-value=3.9e-25 Score=233.31 Aligned_cols=155 Identities=22% Similarity=0.362 Sum_probs=141.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCCCC
Q 003036 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDN 224 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk~~ 224 (854)
.+.++|||+|||+++|+++|+++|++||.|..|+. .+.+|||||+|.+.++|++|+..|++..+.|+.|+|.++.+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~--- 95 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFI-NRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH--- 95 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC---
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE-eCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc---
Confidence 45689999999999999999999999999999987 57799999999999999999999999999999999999864
Q ss_pred CCcccccccceeeecCCCCCCHHHHhhhhcccCceeEeee----cCCcccEEEEEeCCHHHHHHHHHHhC-CceeC---C
Q 003036 225 PSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELN-SRYIA---G 296 (854)
Q Consensus 225 ~~~~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri----t~~skG~AFVeF~d~e~A~kAl~~LN-G~~I~---G 296 (854)
..+|||+|||..+++++|+++|+.||.|..|++ ++.++|||||+|.+.++|.+|++.|| +..+. +
T Consensus 96 -------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~ 168 (261)
T 3sde_A 96 -------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTP 168 (261)
T ss_dssp -------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSC
T ss_pred -------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCC
Confidence 358999999999999999999999999999877 45578999999999999999999995 55554 8
Q ss_pred eEEEEEeccCchhh
Q 003036 297 KQIKLEPSHLRGLR 310 (854)
Q Consensus 297 k~IkV~~a~pk~~R 310 (854)
++|.|.++.+...+
T Consensus 169 r~i~v~~~~~~~~~ 182 (261)
T 3sde_A 169 RPVIVEPMEQFDDE 182 (261)
T ss_dssp CBCEEEECCCEESS
T ss_pred ceEEEeeccccCcc
Confidence 99999999887643
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.92 E-value=1.6e-24 Score=230.46 Aligned_cols=156 Identities=16% Similarity=0.206 Sum_probs=135.3
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe---CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeee
Q 003036 141 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR---ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (854)
Q Consensus 141 p~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~---tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~ 217 (854)
+..+.+.++|||+|||+++++++|+++|++||+|..|+. ...++|||||+|.+.++|++|+ .+++..+.|++|.|.
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAI-TKTHKVVGQNEIIVS 113 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHH-TTTTCEETTEECEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHH-HhCCcEeCCcEEEEE
Confidence 345677899999999999999999999999999999883 2235899999999999999999 599999999999999
Q ss_pred ecCCCCCCCcccccccceeeecCCCCCCHHHHhhhhcccC-ceeEeeec----CCcccEEEEEeCCHHHHHHHHHHhCCc
Q 003036 218 YSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYG-EIKEIRET----PQKIHQKYIEFYDTRAAEAALRELNSR 292 (854)
Q Consensus 218 ~a~pk~~~~~~~~~~~tLfV~NLp~svTeedLreiFs~fG-~I~~Vrit----~~skG~AFVeF~d~e~A~kAl~~LNG~ 292 (854)
++. ..+|||+|||..+++++|+++|+.|| .|..|++. +.++|||||+|.+.++|.+|++.|||.
T Consensus 114 ~~~-----------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 182 (292)
T 2ghp_A 114 HLT-----------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGL 182 (292)
T ss_dssp ECC-----------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTC
T ss_pred ECC-----------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 862 46899999999999999999999999 99998873 346899999999999999999999999
Q ss_pred eeCCeEEEEEeccCch
Q 003036 293 YIAGKQIKLEPSHLRG 308 (854)
Q Consensus 293 ~I~Gk~IkV~~a~pk~ 308 (854)
.|.|++|+|.++.++.
T Consensus 183 ~~~g~~l~v~~a~~~~ 198 (292)
T 2ghp_A 183 KIEGYTLVTKVSNPLE 198 (292)
T ss_dssp EETTEECEEEECCCC-
T ss_pred EeCCcEEEEEECCCCc
Confidence 9999999999998765
No 21
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.78 E-value=3.8e-19 Score=172.39 Aligned_cols=127 Identities=21% Similarity=0.258 Sum_probs=112.8
Q ss_pred CccccceEEEeeCCHHHHHHHHHHh-cceecCCceeeeeecCCCC------------CCCcccccccceeeecCCCCCCH
Q 003036 180 ASKHCGFVTISYYDIRAARNAMKSL-QNKLTRSGKLDIHYSIPKD------------NPSEKEINQGTLVVFNLDSSVSN 246 (854)
Q Consensus 180 tgksKGfAFVeF~d~edA~kAl~~L-ng~~L~Gr~L~V~~a~pk~------------~~~~~~~~~~tLfV~NLp~svTe 246 (854)
..+.+|+++|+|.+.++|++|++++ ++..+.| .+.+.++.++. .........++|||+|||+.+++
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCH
Confidence 3467999999999999999999999 9999999 99999886531 11122235579999999999999
Q ss_pred HHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCc
Q 003036 247 DELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 307 (854)
Q Consensus 247 edLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk 307 (854)
++|+++|++||.|.+|++...++|||||+|.+.++|.+|++.|||..|.|++|+|+|++++
T Consensus 88 ~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 88 TELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 9999999999999999997778999999999999999999999999999999999999875
No 22
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.77 E-value=2.4e-18 Score=167.55 Aligned_cols=131 Identities=18% Similarity=0.245 Sum_probs=104.0
Q ss_pred EeCccccceEEEeeCCHHHHHHHHHHhcceecC-------CceeeeeecCCCCC--CCcccccccceeeecCCCCCCHHH
Q 003036 178 YRASKHCGFVTISYYDIRAARNAMKSLQNKLTR-------SGKLDIHYSIPKDN--PSEKEINQGTLVVFNLDSSVSNDE 248 (854)
Q Consensus 178 ~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~-------Gr~L~V~~a~pk~~--~~~~~~~~~tLfV~NLp~svTeed 248 (854)
....+.+|||||+|.+.++|++|++.+++.... +............. .........+|||+|||+.+++++
T Consensus 7 ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~ 86 (158)
T 2kn4_A 7 LNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDT 86 (158)
T ss_dssp EECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHH
T ss_pred ecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHH
Confidence 344578999999999999999999988764322 22222222221111 111223456999999999999999
Q ss_pred HhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCch
Q 003036 249 LHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 249 LreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~ 308 (854)
|+++|+.||.|.+|++ ++.++|||||+|.+.++|.+|++.|||..|.|++|+|.|++++.
T Consensus 87 l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 87 LRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp HHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred HHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 9999999999999887 45678999999999999999999999999999999999998764
No 23
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.75 E-value=3.2e-18 Score=159.23 Aligned_cols=103 Identities=12% Similarity=0.241 Sum_probs=72.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE---eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCC
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFY---RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~---~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk 222 (854)
.+.+|||+|||+++++++|+++|++||.|.+|+ ..+.+||||||+|.+.++|++|++.|++..|.|++|+|.++.++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 357899999999999999999999999999887 34567999999999999999999999999999999999999877
Q ss_pred CCCCcc----cccccceeeecCCCCCCHHH
Q 003036 223 DNPSEK----EINQGTLVVFNLDSSVSNDE 248 (854)
Q Consensus 223 ~~~~~~----~~~~~tLfV~NLp~svTeed 248 (854)
...... .....+|||+|||+++|++.
T Consensus 84 ~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC----------------------------
T ss_pred cccccccccccCCCCceEeCCCCCCccccc
Confidence 543221 22345899999999999863
No 24
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.62 E-value=2.6e-16 Score=145.39 Aligned_cols=103 Identities=22% Similarity=0.330 Sum_probs=92.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe--CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCC
Q 003036 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR--ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 221 (854)
Q Consensus 144 e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~--tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~p 221 (854)
..++++|||+|||+++++++|+++|++||.|..|.. .+..+|||||+|.+.++|++|++.|+|..+.|+.|.|.|+.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 457899999999999999999999999999999983 567799999999999999999999999999999999999875
Q ss_pred CCCCCcccccccceeeecCCCCCCHHHHhhhhcccCc
Q 003036 222 KDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGE 258 (854)
Q Consensus 222 k~~~~~~~~~~~tLfV~NLp~svTeedLreiFs~fG~ 258 (854)
+... .+++...++++|.++|++||.
T Consensus 85 ~~~~------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 85 NRAF------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHT------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred Chhh------------hhhhHhHhHHHHHHHHHHhCC
Confidence 4321 567778899999999999985
No 25
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.62 E-value=7.1e-16 Score=140.16 Aligned_cols=76 Identities=22% Similarity=0.441 Sum_probs=71.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecC
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~ 220 (854)
..++|||+|||+++|+++|+++|++||+|..|+ .+++++|||||+|.+.++|++|++.|+|..|.|++|+|.|++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 357999999999999999999999999999987 357889999999999999999999999999999999999997
Q ss_pred C
Q 003036 221 P 221 (854)
Q Consensus 221 p 221 (854)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 6
No 26
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=138.96 Aligned_cols=74 Identities=23% Similarity=0.408 Sum_probs=70.1
Q ss_pred cceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 003036 233 GTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (854)
Q Consensus 233 ~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~p 306 (854)
.+|||+|||.++|+++|+++|++||.|.+|++ ++.++|||||+|.+.++|.+|++.|||..|.|++|+|+|++|
T Consensus 20 t~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 48999999999999999999999999999876 466789999999999999999999999999999999999987
No 27
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.59 E-value=7.7e-16 Score=147.58 Aligned_cols=119 Identities=18% Similarity=0.284 Sum_probs=76.1
Q ss_pred ceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCCCCCCcccccccceeeecCCCCCCHHHHhhhhcccCceeEeee
Q 003036 185 GFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE 264 (854)
Q Consensus 185 GfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri 264 (854)
-++|++|.|...|..|+..+++....|+. .+.+..+. .......+|||+|||..+++++|+++|++||.|..|++
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~~~----~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i 79 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGRPP----PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYI 79 (135)
T ss_dssp -------------------------------CCSCCSC----SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEEC
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCC-CCCcCCCC----CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 36788999999999999999887766654 22333332 22345679999999999999999999999999999887
Q ss_pred -----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCch
Q 003036 265 -----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 265 -----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~ 308 (854)
++..+|||||+|.+.++|++|++.|||..|.|++|+|+|++++.
T Consensus 80 ~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 80 PRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 128 (135)
T ss_dssp CCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCC
T ss_pred EecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 34578999999999999999999999999999999999998764
No 28
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=2.8e-15 Score=135.32 Aligned_cols=94 Identities=21% Similarity=0.314 Sum_probs=81.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCCCCCCc
Q 003036 148 RTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDNPSE 227 (854)
Q Consensus 148 rtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk~~~~~ 227 (854)
++|||+|||+++++++|+++|++||+|..|+....++|||||+|.+.++|++|++.|++..+.|++|+|.++.++.....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 80 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSR 80 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCccc
Confidence 48999999999999999999999999999985333899999999999999999999999999999999999987754322
Q ss_pred cc------ccccceeeecCC
Q 003036 228 KE------INQGTLVVFNLD 241 (854)
Q Consensus 228 ~~------~~~~tLfV~NLp 241 (854)
.. ....+|||+||+
T Consensus 81 ~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 81 FDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSCCCSCCCCSCCCSCCCC
T ss_pred CCCCCccccCCCceecCCCC
Confidence 11 124589999997
No 29
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.58 E-value=4.6e-15 Score=137.55 Aligned_cols=83 Identities=19% Similarity=0.259 Sum_probs=76.2
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~ 305 (854)
+.++|||+||++.+++++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++.|||..|.|++|+|+++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 4568999999999999999999999999999887 46788999999999999999999999999999999999998
Q ss_pred CchhhhHh
Q 003036 306 LRGLRKCL 313 (854)
Q Consensus 306 pk~~Rr~l 313 (854)
.+..|+++
T Consensus 85 ~~~~~~~~ 92 (110)
T 3s8s_A 85 KGQQRMKY 92 (110)
T ss_dssp TTHHHHHH
T ss_pred CCcHHHHH
Confidence 88776633
No 30
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=7.3e-15 Score=132.30 Aligned_cols=84 Identities=14% Similarity=0.218 Sum_probs=76.2
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeee
Q 003036 141 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (854)
Q Consensus 141 p~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V 216 (854)
.....+.++|||+|||+++++++|+++|++||.|..|+. +++++|||||+|.+.++|++|++.|++..+.|++|+|
T Consensus 11 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 11 YSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp CSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345567899999999999999999999999999999883 4677899999999999999999999999999999999
Q ss_pred eecCCCCC
Q 003036 217 HYSIPKDN 224 (854)
Q Consensus 217 ~~a~pk~~ 224 (854)
.++.++..
T Consensus 91 ~~a~~~~~ 98 (100)
T 2do4_A 91 AISNSGPS 98 (100)
T ss_dssp EECCCCSC
T ss_pred EECCCCCC
Confidence 99987653
No 31
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.58 E-value=1.6e-15 Score=135.47 Aligned_cols=80 Identities=20% Similarity=0.364 Sum_probs=71.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccC-CeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhc-ceecCCceeeeeec
Q 003036 147 SRTLLLRKINSNIEDSELKALFEQYG-DVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQ-NKLTRSGKLDIHYS 219 (854)
Q Consensus 147 srtLfVgNLP~~vTEedL~elFsqfG-~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Ln-g~~L~Gr~L~V~~a 219 (854)
+++|||+|||+++|+++|+++|++|| .|.+|+ .+++++|||||+|.+.++|++|++.++ +..+.|++|+|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57999999999999999999999999 788887 357899999999999999999999874 56799999999999
Q ss_pred CCCCCCC
Q 003036 220 IPKDNPS 226 (854)
Q Consensus 220 ~pk~~~~ 226 (854)
.|+....
T Consensus 81 ~~~~~~~ 87 (91)
T 2lxi_A 81 DPKPKIN 87 (91)
T ss_dssp CSCCCCS
T ss_pred CCCCCCC
Confidence 8876543
No 32
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.1e-14 Score=130.72 Aligned_cols=82 Identities=20% Similarity=0.306 Sum_probs=76.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeee
Q 003036 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (854)
Q Consensus 144 e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~ 218 (854)
..+.++|||+|||+++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|++..|.|++|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356799999999999999999999999999999983 677899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 003036 219 SIPKDNP 225 (854)
Q Consensus 219 a~pk~~~ 225 (854)
+.++...
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9887654
No 33
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.58 E-value=5.5e-15 Score=135.45 Aligned_cols=80 Identities=13% Similarity=0.204 Sum_probs=73.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhccee--cCCceeeeeecC
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKL--TRSGKLDIHYSI 220 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~--L~Gr~L~V~~a~ 220 (854)
...|+++|||+|||.++++++|+++|++||.|..++. .+.||||||+|.+.++|.+|++.|++.. +.|++|+|.|+.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i-~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVV-MPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEE-EcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 4468999999999999999999999999999999986 3578999999999999999999999876 789999999998
Q ss_pred CCC
Q 003036 221 PKD 223 (854)
Q Consensus 221 pk~ 223 (854)
++.
T Consensus 96 ~k~ 98 (100)
T 3r27_A 96 SQK 98 (100)
T ss_dssp CSC
T ss_pred ccc
Confidence 753
No 34
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.58 E-value=4.8e-15 Score=137.39 Aligned_cols=79 Identities=20% Similarity=0.403 Sum_probs=73.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeee
Q 003036 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (854)
Q Consensus 144 e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~ 218 (854)
+.|.++|||+|||+++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|||..|.|++|+|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 457899999999999999999999999999999882 578999999999999999999999999999999999999
Q ss_pred cCCC
Q 003036 219 SIPK 222 (854)
Q Consensus 219 a~pk 222 (854)
+..+
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8654
No 35
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.57 E-value=4.2e-15 Score=146.51 Aligned_cols=123 Identities=20% Similarity=0.263 Sum_probs=72.9
Q ss_pred EeeCCHHHHHHHHHHhcceecC--CceeeeeecCCCC----------------CCCcccccccceeeecCCCCCCHHHHh
Q 003036 189 ISYYDIRAARNAMKSLQNKLTR--SGKLDIHYSIPKD----------------NPSEKEINQGTLVVFNLDSSVSNDELH 250 (854)
Q Consensus 189 VeF~d~edA~kAl~~Lng~~L~--Gr~L~V~~a~pk~----------------~~~~~~~~~~tLfV~NLp~svTeedLr 250 (854)
.+|.+.++|+.|+..|++.... |+.+...+..... ..........+|||+|||..+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6889999999999999887654 5555554422110 001112244589999999999999999
Q ss_pred hhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCchhhh
Q 003036 251 HIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGLRK 311 (854)
Q Consensus 251 eiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~~Rr 311 (854)
++|++||.|..|++ ++.++|||||+|.+.++|.+||+.|||..|.|++|+|.|+.++..++
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 99999999999887 34468999999999999999999999999999999999998877554
No 36
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.56 E-value=5.4e-15 Score=137.44 Aligned_cols=80 Identities=23% Similarity=0.378 Sum_probs=72.1
Q ss_pred ccceeeecCCCCCCHHHHhhhhcccCceeEeee---cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCch
Q 003036 232 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE---TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 232 ~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri---t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~ 308 (854)
..+|||+|||+++++++|+++|++||.|.+|++ ...++|||||+|.+.++|++|++.|||..|.|++|+|.+++++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence 458999999999999999999999999999887 34468999999999999999999999999999999999998876
Q ss_pred hhh
Q 003036 309 LRK 311 (854)
Q Consensus 309 ~Rr 311 (854)
.++
T Consensus 85 ~~~ 87 (115)
T 4f25_A 85 ERE 87 (115)
T ss_dssp C--
T ss_pred ccc
Confidence 554
No 37
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=9.1e-15 Score=135.12 Aligned_cols=83 Identities=20% Similarity=0.257 Sum_probs=73.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcc--eecCCceeeeeecC
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQN--KLTRSGKLDIHYSI 220 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng--~~L~Gr~L~V~~a~ 220 (854)
...+.++|||+|||+++++++|+++|++||+|..|++ .+.||||||+|.+.++|++|++.|++ ..|.|++|+|.|+.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i-~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLM-LKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 3457899999999999999999999999999999995 23589999999999999999998864 78999999999998
Q ss_pred CCCCCC
Q 003036 221 PKDNPS 226 (854)
Q Consensus 221 pk~~~~ 226 (854)
++....
T Consensus 91 ~~~~~~ 96 (105)
T 1sjq_A 91 HKELKT 96 (105)
T ss_dssp SSSCCC
T ss_pred CCCCCc
Confidence 776543
No 38
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.56 E-value=1.2e-14 Score=134.40 Aligned_cols=85 Identities=16% Similarity=0.266 Sum_probs=77.0
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceee
Q 003036 141 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 215 (854)
Q Consensus 141 p~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~ 215 (854)
.....+.++|||+|||+++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 345567799999999999999999999999999988872 677899999999999999999999999999999999
Q ss_pred eeecCCCCCC
Q 003036 216 IHYSIPKDNP 225 (854)
Q Consensus 216 V~~a~pk~~~ 225 (854)
|.|+.++...
T Consensus 99 V~~a~~~~~~ 108 (115)
T 2cpz_A 99 VQLKRSKNDS 108 (115)
T ss_dssp EECCCCSCCC
T ss_pred EEEcCCCCcC
Confidence 9999887654
No 39
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.5e-14 Score=133.06 Aligned_cols=83 Identities=12% Similarity=0.175 Sum_probs=73.9
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcce--ecCCceeeeee
Q 003036 141 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNK--LTRSGKLDIHY 218 (854)
Q Consensus 141 p~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~--~L~Gr~L~V~~ 218 (854)
+....|+++|||+|||+++++++|+++|++||.|..|.+ .+.||||||+|.+.++|++|++.|++. .+.|++|+|.|
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i-~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 9 HHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMM-MPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp CCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEE-ECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 345678899999999999999999999999999999985 346899999999999999999999775 48999999999
Q ss_pred cCCCCC
Q 003036 219 SIPKDN 224 (854)
Q Consensus 219 a~pk~~ 224 (854)
+.++..
T Consensus 88 a~~~~~ 93 (104)
T 1wex_A 88 STSKRI 93 (104)
T ss_dssp CSSSSC
T ss_pred ccCccc
Confidence 987654
No 40
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2e-14 Score=130.38 Aligned_cols=84 Identities=14% Similarity=0.220 Sum_probs=76.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeee
Q 003036 142 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (854)
Q Consensus 142 ~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V 216 (854)
....+.++|||+|||+++++++|+++|++||.|..|+. +++++|||||+|.+.++|++|++.|++..|.|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34567899999999999999999999999999999983 6778999999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 003036 217 HYSIPKDNP 225 (854)
Q Consensus 217 ~~a~pk~~~ 225 (854)
.++.++...
T Consensus 90 ~~a~~~~~~ 98 (105)
T 1x5u_A 90 NKASAHNKN 98 (105)
T ss_dssp EETTTTSCC
T ss_pred EECCCCCcC
Confidence 999877543
No 41
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.7e-14 Score=128.35 Aligned_cols=81 Identities=19% Similarity=0.315 Sum_probs=74.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeec
Q 003036 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a 219 (854)
.++++|||+|||.++++++|+++|++||.|..|+. +++++|||||+|.+.++|++|++.|++..+.|++|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 46799999999999999999999999999999883 4678999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 003036 220 IPKDNP 225 (854)
Q Consensus 220 ~pk~~~ 225 (854)
.++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 887654
No 42
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.2e-14 Score=131.47 Aligned_cols=85 Identities=20% Similarity=0.281 Sum_probs=77.0
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceee
Q 003036 141 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 215 (854)
Q Consensus 141 p~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~ 215 (854)
+....+.++|||+|||+++++++|+++|++||.|..|.. +++++|||||+|.+.++|++|++.|++..|.|++|+
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 345567899999999999999999999999999999983 367899999999999999999999999999999999
Q ss_pred eeecCCCCCC
Q 003036 216 IHYSIPKDNP 225 (854)
Q Consensus 216 V~~a~pk~~~ 225 (854)
|.++.++...
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2dnm_A 87 VQVARYGRRD 96 (103)
T ss_dssp EEECSSCCSC
T ss_pred EEECCcCCCC
Confidence 9999876543
No 43
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=2.3e-14 Score=130.23 Aligned_cols=84 Identities=18% Similarity=0.378 Sum_probs=76.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe------CccccceEEEeeCCHHHHHHHHHHh-cceecCCcee
Q 003036 142 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR------ASKHCGFVTISYYDIRAARNAMKSL-QNKLTRSGKL 214 (854)
Q Consensus 142 ~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~------tgksKGfAFVeF~d~edA~kAl~~L-ng~~L~Gr~L 214 (854)
....+.++|||+|||+++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.| ++..|.|++|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 45567899999999999999999999999999999984 5567999999999999999999999 9999999999
Q ss_pred eeeecCCCCCC
Q 003036 215 DIHYSIPKDNP 225 (854)
Q Consensus 215 ~V~~a~pk~~~ 225 (854)
+|.|+.++...
T Consensus 90 ~v~~a~~~~~~ 100 (107)
T 2cph_A 90 VLEWADSEVTV 100 (107)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999887554
No 44
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.1e-14 Score=131.52 Aligned_cols=84 Identities=13% Similarity=0.241 Sum_probs=76.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE--eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeec
Q 003036 142 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY--RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (854)
Q Consensus 142 ~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~--~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a 219 (854)
....+.++|||+|||+++++++|+++|++||.|..|+ .+++++|||||+|.+.++|++|++.|++..|.|++|+|.|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 3456789999999999999999999999999999988 35567999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 003036 220 IPKDNP 225 (854)
Q Consensus 220 ~pk~~~ 225 (854)
.++...
T Consensus 97 ~~~~~~ 102 (109)
T 1x4a_A 97 RSGRGT 102 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 876543
No 45
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2.2e-14 Score=128.96 Aligned_cols=83 Identities=20% Similarity=0.360 Sum_probs=75.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeee
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~ 217 (854)
...+.++|||+|||.++++++|+++|++||.|..|+. +++++|||||+|.+.++|++|++ |++..|.|++|+|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 4457899999999999999999999999999999984 46789999999999999999998 99999999999999
Q ss_pred ecCCCCCCC
Q 003036 218 YSIPKDNPS 226 (854)
Q Consensus 218 ~a~pk~~~~ 226 (854)
++.++....
T Consensus 85 ~a~~~~~~~ 93 (99)
T 2dgs_A 85 RAEPRDSKS 93 (99)
T ss_dssp ECCCCCCCC
T ss_pred ECCCCcccC
Confidence 998876543
No 46
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.55 E-value=1.4e-14 Score=129.75 Aligned_cols=79 Identities=23% Similarity=0.333 Sum_probs=73.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecC
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~ 220 (854)
|+++|||+|||.++++++|+++|++||.|..++. +++++|||||+|.+.++|++|++.|+|..+.|+.|+|.|+.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 5789999999999999999999999999999983 46779999999999999999999999999999999999998
Q ss_pred CCCC
Q 003036 221 PKDN 224 (854)
Q Consensus 221 pk~~ 224 (854)
++..
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7654
No 47
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.55 E-value=1.6e-14 Score=127.72 Aligned_cols=82 Identities=15% Similarity=0.186 Sum_probs=75.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe---CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecC
Q 003036 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR---ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (854)
Q Consensus 144 e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~---tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~ 220 (854)
..+.++|||+|||+++++++|+++|++||+|..++. +++++|||||+|.+.++|++|++.|++..+.|++|+|.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 456799999999999999999999999999999883 56789999999999999999999999999999999999998
Q ss_pred CCCCC
Q 003036 221 PKDNP 225 (854)
Q Consensus 221 pk~~~ 225 (854)
+....
T Consensus 85 ~~~~~ 89 (92)
T 2dgv_A 85 NASGP 89 (92)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 76543
No 48
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.8e-14 Score=129.19 Aligned_cols=84 Identities=14% Similarity=0.356 Sum_probs=75.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe---CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeee
Q 003036 142 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR---ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (854)
Q Consensus 142 ~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~---tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~ 218 (854)
....+.++|||+|||+++++++|+++|++||.|..|+. ...++|||||+|.+.++|++|++.|++..|.|++|+|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 35567899999999999999999999999999999883 334789999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 003036 219 SIPKDNP 225 (854)
Q Consensus 219 a~pk~~~ 225 (854)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqi_A 90 ATTPSSQ 96 (103)
T ss_dssp CCCTTCC
T ss_pred CCCCccc
Confidence 9886543
No 49
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.55 E-value=9.9e-15 Score=127.61 Aligned_cols=78 Identities=14% Similarity=0.322 Sum_probs=70.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeec
Q 003036 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a 219 (854)
.+.++|||+|||.++++++|+++|++||.|..++. +++++|||||+|.+.++|++|++.|++..+.|++|+|.|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 46789999999999999999999999999999883 5678999999999999999999999999999999999999
Q ss_pred CCC
Q 003036 220 IPK 222 (854)
Q Consensus 220 ~pk 222 (854)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 765
No 50
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.8e-14 Score=130.41 Aligned_cols=85 Identities=14% Similarity=0.311 Sum_probs=77.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe---CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeee
Q 003036 142 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR---ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (854)
Q Consensus 142 ~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~---tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~ 218 (854)
....+.++|||+|||+++++++|+++|++||.|..|+. +++++|||||+|.+.++|++|++.|++..|.|++|+|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34557899999999999999999999999999999883 467899999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 003036 219 SIPKDNPS 226 (854)
Q Consensus 219 a~pk~~~~ 226 (854)
+.++....
T Consensus 90 a~~~~~~~ 97 (103)
T 2d9p_A 90 AQRKEERQ 97 (103)
T ss_dssp CSSCCCCC
T ss_pred ecccccCC
Confidence 98876543
No 51
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.55 E-value=3.1e-15 Score=133.63 Aligned_cols=77 Identities=17% Similarity=0.256 Sum_probs=69.8
Q ss_pred ccceeeecCCCCCCHHHHhhhhcccC-ceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhC-CceeCCeEEEEEec
Q 003036 232 QGTLVVFNLDSSVSNDELHHIFGVYG-EIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELN-SRYIAGKQIKLEPS 304 (854)
Q Consensus 232 ~~tLfV~NLp~svTeedLreiFs~fG-~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LN-G~~I~Gk~IkV~~a 304 (854)
+++|||+|||+++|+++|+++|++|| .|++|++ ++.++|||||+|.+.++|.+|++.|+ +..|.|++|+|+|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 7999876 46678999999999999999999884 57899999999999
Q ss_pred cCch
Q 003036 305 HLRG 308 (854)
Q Consensus 305 ~pk~ 308 (854)
.++.
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8865
No 52
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.6e-14 Score=136.37 Aligned_cols=89 Identities=20% Similarity=0.263 Sum_probs=76.9
Q ss_pred cCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcc--eecCCcee
Q 003036 137 AGEHLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQN--KLTRSGKL 214 (854)
Q Consensus 137 ~ge~p~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng--~~L~Gr~L 214 (854)
.++......++++|||+|||+++++++|+++|++||.|..|++ .+.||||||+|.+.++|++|++.|++ ..|.|++|
T Consensus 21 ~~~~~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i-~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 21 MGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLM-LKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp -CCTTSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEE-EGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred cccccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-eCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 3444455678899999999999999999999999999999985 34589999999999999999999985 57999999
Q ss_pred eeeecCCCCCCC
Q 003036 215 DIHYSIPKDNPS 226 (854)
Q Consensus 215 ~V~~a~pk~~~~ 226 (854)
+|.|+.++....
T Consensus 100 ~V~~a~~k~~~~ 111 (119)
T 2ad9_A 100 YIQFSNHKELKT 111 (119)
T ss_dssp EEEECSSSSCCC
T ss_pred EEEEccCCCCCc
Confidence 999998776543
No 53
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.9e-14 Score=127.84 Aligned_cols=78 Identities=19% Similarity=0.306 Sum_probs=72.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeee
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~ 217 (854)
...+.++|||+|||+++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|++..|.|++|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 4457799999999999999999999999999999983 36789999999999999999999999999999999999
Q ss_pred ecC
Q 003036 218 YSI 220 (854)
Q Consensus 218 ~a~ 220 (854)
|++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 974
No 54
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=3.2e-14 Score=128.74 Aligned_cols=84 Identities=15% Similarity=0.311 Sum_probs=75.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe---CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeee
Q 003036 142 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR---ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (854)
Q Consensus 142 ~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~---tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~ 218 (854)
....+.++|||+|||+++++++|+++|++||.|..|++ ...++|||||+|.+.++|++|++.|++..|.|++|+|.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34567899999999999999999999999999999883 234699999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 003036 219 SIPKDNP 225 (854)
Q Consensus 219 a~pk~~~ 225 (854)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 9887654
No 55
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.55 E-value=2.5e-14 Score=132.04 Aligned_cols=84 Identities=15% Similarity=0.336 Sum_probs=76.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeee
Q 003036 142 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (854)
Q Consensus 142 ~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V 216 (854)
....+.++|||+|||+++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567899999999999999999999999999999883 5677999999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 003036 217 HYSIPKDNP 225 (854)
Q Consensus 217 ~~a~pk~~~ 225 (854)
.|+.++...
T Consensus 90 ~~a~~~~~~ 98 (115)
T 2dgo_A 90 NWATRKPPA 98 (115)
T ss_dssp EESSCCCCC
T ss_pred EEccCCCCC
Confidence 999887654
No 56
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.55 E-value=1.4e-14 Score=125.56 Aligned_cols=77 Identities=21% Similarity=0.331 Sum_probs=71.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCC
Q 003036 147 SRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 221 (854)
Q Consensus 147 srtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~p 221 (854)
+.+|||+|||+++++++|+++|++||+|..++. +++++|||||+|.+.++|++|++.|+|..+.|++|+|.|+.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 468999999999999999999999999999872 567799999999999999999999999999999999999987
Q ss_pred CC
Q 003036 222 KD 223 (854)
Q Consensus 222 k~ 223 (854)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 57
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=3.2e-14 Score=127.57 Aligned_cols=81 Identities=20% Similarity=0.346 Sum_probs=73.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecC--CceeeeeecC
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTR--SGKLDIHYSI 220 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~--Gr~L~V~~a~ 220 (854)
...++++|||+|||+++++++|+++|++||.|..|... ..+|||||+|.+.++|++|++.|++..+. |++|+|.|+.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHV-KGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEEC-SSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe-CCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 34567999999999999999999999999999999863 34899999999999999999999999999 9999999998
Q ss_pred CCCC
Q 003036 221 PKDN 224 (854)
Q Consensus 221 pk~~ 224 (854)
++..
T Consensus 92 ~~~~ 95 (97)
T 1why_A 92 SGPS 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 58
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.54 E-value=9.6e-15 Score=130.65 Aligned_cols=81 Identities=15% Similarity=0.147 Sum_probs=73.3
Q ss_pred ccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCchhhh
Q 003036 232 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGLRK 311 (854)
Q Consensus 232 ~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~~Rr 311 (854)
+..|||+||++.+|+++|+++|.+||+|+++++. .+||||||+|.+.++|.+|++.||+..+.|++|+|.++...+..+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~-~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e~~~~~ 85 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPY-LNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSENEVQS 85 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCHHHHHH
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEc-CCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCHHHHHH
Confidence 4679999999999999999999999999999983 489999999999999999999999999999999999996544444
Q ss_pred Hh
Q 003036 312 CL 313 (854)
Q Consensus 312 ~l 313 (854)
.+
T Consensus 86 ~~ 87 (89)
T 2wbr_A 86 IM 87 (89)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 59
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.7e-14 Score=130.54 Aligned_cols=83 Identities=18% Similarity=0.368 Sum_probs=76.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeee
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~ 217 (854)
...+.++|||+|||+++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|++..|.|++|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 4567899999999999999999999999999999883 56789999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 003036 218 YSIPKDNP 225 (854)
Q Consensus 218 ~a~pk~~~ 225 (854)
|+.++...
T Consensus 91 ~a~~~~~~ 98 (103)
T 2cq0_A 91 WAKPSTNS 98 (103)
T ss_dssp ESSCCCCS
T ss_pred ECCCCCCC
Confidence 99887544
No 60
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=3.7e-14 Score=129.73 Aligned_cols=84 Identities=15% Similarity=0.343 Sum_probs=76.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhc------ceecC
Q 003036 142 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQ------NKLTR 210 (854)
Q Consensus 142 ~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Ln------g~~L~ 210 (854)
....+.++|||+|||+++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+ +..|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 34567899999999999999999999999999999983 46789999999999999999999999 99999
Q ss_pred CceeeeeecCCCCCC
Q 003036 211 SGKLDIHYSIPKDNP 225 (854)
Q Consensus 211 Gr~L~V~~a~pk~~~ 225 (854)
|++|+|.|+.++...
T Consensus 90 g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEA 104 (111)
T ss_dssp SCEEEEECCCCCCCC
T ss_pred CEEEEEEECCCCccC
Confidence 999999999887654
No 61
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.54 E-value=1.9e-14 Score=125.26 Aligned_cols=77 Identities=18% Similarity=0.348 Sum_probs=71.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeee
Q 003036 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (854)
Q Consensus 144 e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~ 218 (854)
..+.++|||+|||+++++++|+++|++||+|..++ .+++++|||||+|.+.++|++|++.|++..+.|++|+|.|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 35779999999999999999999999999999998 3566899999999999999999999999999999999998
Q ss_pred cC
Q 003036 219 SI 220 (854)
Q Consensus 219 a~ 220 (854)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 62
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.9e-14 Score=129.88 Aligned_cols=82 Identities=18% Similarity=0.326 Sum_probs=75.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeee
Q 003036 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (854)
Q Consensus 144 e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~ 218 (854)
..+.++|||+|||+++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|++..|.|++|+|.|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 457899999999999999999999999999999883 466899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 003036 219 SIPKDNP 225 (854)
Q Consensus 219 a~pk~~~ 225 (854)
+.++...
T Consensus 89 a~~~~~~ 95 (102)
T 2cqb_A 89 AKPMRIK 95 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9887654
No 63
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.9e-14 Score=130.55 Aligned_cols=84 Identities=24% Similarity=0.246 Sum_probs=74.0
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhc--ceecCCceeeeee
Q 003036 141 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQ--NKLTRSGKLDIHY 218 (854)
Q Consensus 141 p~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Ln--g~~L~Gr~L~V~~ 218 (854)
+....++++|||+|||+++++++|+++|++||.|..|.. .+.||||||+|.+.++|++|++.|+ +..+.|++|+|.|
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i-~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 87 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILM-LKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQY 87 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-ECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEE
Confidence 345568899999999999999999999999999999985 3459999999999999999999875 5679999999999
Q ss_pred cCCCCCC
Q 003036 219 SIPKDNP 225 (854)
Q Consensus 219 a~pk~~~ 225 (854)
+.++...
T Consensus 88 a~~~~~~ 94 (101)
T 2cq1_A 88 SNHKELK 94 (101)
T ss_dssp CSCSSCC
T ss_pred cCcccCc
Confidence 9876543
No 64
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.1e-14 Score=129.61 Aligned_cols=83 Identities=14% Similarity=0.329 Sum_probs=75.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeee
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~ 217 (854)
...+.++|||+|||+++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|++..|.|++|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456799999999999999999999999999999883 45689999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 003036 218 YSIPKDNP 225 (854)
Q Consensus 218 ~a~pk~~~ 225 (854)
|+.++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x5s_A 88 QAGKSSDN 95 (102)
T ss_dssp EEECCCCC
T ss_pred ECCCCCCC
Confidence 99877543
No 65
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.53 E-value=3.6e-14 Score=128.70 Aligned_cols=82 Identities=15% Similarity=0.279 Sum_probs=74.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CccccceEEEeeCCHHHHHHHHHHhcceecCC---ceeee
Q 003036 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRS---GKLDI 216 (854)
Q Consensus 144 e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~G---r~L~V 216 (854)
..+.++|||+|||+++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..+.| ++|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 456899999999999999999999999999999882 46679999999999999999999999999998 99999
Q ss_pred eecCCCCCC
Q 003036 217 HYSIPKDNP 225 (854)
Q Consensus 217 ~~a~pk~~~ 225 (854)
.|+.++...
T Consensus 92 ~~a~~~~~~ 100 (105)
T 2dnh_A 92 KFADTDKES 100 (105)
T ss_dssp EESCSSCCC
T ss_pred EECccCccc
Confidence 999877654
No 66
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.8e-14 Score=130.94 Aligned_cols=83 Identities=12% Similarity=0.317 Sum_probs=75.2
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceee
Q 003036 141 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 215 (854)
Q Consensus 141 p~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~ 215 (854)
+....++++|||+|||+++++++|+++|++||.|..|.. +++++|||||+|.+.++|++|++.|++..|.|++|+
T Consensus 17 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 96 (106)
T 1p27_B 17 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 96 (106)
T ss_dssp BCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence 334556799999999999999999999999999999883 477899999999999999999999999999999999
Q ss_pred eeecCCCC
Q 003036 216 IHYSIPKD 223 (854)
Q Consensus 216 V~~a~pk~ 223 (854)
|.|+.++.
T Consensus 97 V~~a~~~~ 104 (106)
T 1p27_B 97 VDWCFVRG 104 (106)
T ss_dssp EEESEESS
T ss_pred EEeecCCC
Confidence 99997754
No 67
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.4e-14 Score=127.23 Aligned_cols=79 Identities=13% Similarity=0.274 Sum_probs=72.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeee
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~ 217 (854)
...+.++|||+|||+++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|++..+.|++|+|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4567899999999999999999999999999999883 36789999999999999999999999999999999999
Q ss_pred ecCC
Q 003036 218 YSIP 221 (854)
Q Consensus 218 ~a~p 221 (854)
|+..
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9864
No 68
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=2.6e-14 Score=128.03 Aligned_cols=81 Identities=23% Similarity=0.379 Sum_probs=74.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe--------CccccceEEEeeCCHHHHHHHHHHhcceecCCceeee
Q 003036 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR--------ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~--------tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V 216 (854)
.+.++|||+|||+++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|++..|.|++|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 46799999999999999999999999999999883 3378999999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 003036 217 HYSIPKDNP 225 (854)
Q Consensus 217 ~~a~pk~~~ 225 (854)
.++.++...
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999877544
No 69
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=1.8e-14 Score=132.35 Aligned_cols=80 Identities=14% Similarity=0.120 Sum_probs=72.2
Q ss_pred CCCCCcEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcce--ecCCceeeeeec
Q 003036 143 DEHPSRTLLLRKINS-NIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNK--LTRSGKLDIHYS 219 (854)
Q Consensus 143 ~e~psrtLfVgNLP~-~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~--~L~Gr~L~V~~a 219 (854)
...++++|||+|||+ ++++++|+++|++||.|..|++ .+.+|||||+|.+.++|++|++.|++. .|.|++|+|.|+
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i-~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 89 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLI-LNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLS 89 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEE-CSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEE
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEE-EcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEEC
Confidence 345789999999999 9999999999999999999996 356799999999999999999999875 499999999999
Q ss_pred CCCC
Q 003036 220 IPKD 223 (854)
Q Consensus 220 ~pk~ 223 (854)
.++.
T Consensus 90 ~~~~ 93 (102)
T 1x4d_A 90 QKYK 93 (102)
T ss_dssp CCCT
T ss_pred CCCC
Confidence 8654
No 70
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.53 E-value=2.4e-14 Score=125.13 Aligned_cols=77 Identities=18% Similarity=0.409 Sum_probs=69.6
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~ 305 (854)
+..+|||+|||..+++++|+++|++||.|.+|++ ++.++|||||+|.+.++|.+|++.|||..+.|++|+|+|++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 3468999999999999999999999999999887 44568999999999999999999999999999999999998
Q ss_pred Cc
Q 003036 306 LR 307 (854)
Q Consensus 306 pk 307 (854)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 75
No 71
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.7e-14 Score=128.64 Aligned_cols=82 Identities=15% Similarity=0.344 Sum_probs=74.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEE-E-----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeee
Q 003036 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTF-Y-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv-~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~ 218 (854)
.+.++|||+|||+++++++|+++|++||.|..+ + .+++++|||||+|.+.++|++|++.|++..+.|++|+|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467999999999999999999999999999877 5 3566899999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 003036 219 SIPKDNPS 226 (854)
Q Consensus 219 a~pk~~~~ 226 (854)
+.++....
T Consensus 83 a~~~~~~~ 90 (96)
T 1x5t_A 83 AFKKDSKG 90 (96)
T ss_dssp SCCCCCCC
T ss_pred ecccCCCC
Confidence 98876543
No 72
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=4.1e-14 Score=125.62 Aligned_cols=82 Identities=20% Similarity=0.270 Sum_probs=74.8
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecC
Q 003036 141 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (854)
Q Consensus 141 p~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~ 220 (854)
+....+.++|||+|||+++++++|+++|++||.|..|+.. ++||||+|.+.++|++|++.|++..+.|++|+|.++.
T Consensus 4 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 4 GSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp SCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 4456678999999999999999999999999999999863 6699999999999999999999999999999999998
Q ss_pred CCCCC
Q 003036 221 PKDNP 225 (854)
Q Consensus 221 pk~~~ 225 (854)
++...
T Consensus 81 ~~~~~ 85 (92)
T 2dgt_A 81 SRLRT 85 (92)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 77543
No 73
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=2.8e-14 Score=128.47 Aligned_cols=79 Identities=22% Similarity=0.308 Sum_probs=72.8
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCceeEeee----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~ 305 (854)
...++|||+|||..+++++|+++|++||.|.+|++ ++..++||||+|.+.++|.+|++.|||..|.|++|+|+|++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 45679999999999999999999999999999887 34567999999999999999999999999999999999998
Q ss_pred Cch
Q 003036 306 LRG 308 (854)
Q Consensus 306 pk~ 308 (854)
++.
T Consensus 95 ~~~ 97 (100)
T 2do4_A 95 SGP 97 (100)
T ss_dssp CCS
T ss_pred CCC
Confidence 865
No 74
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.53 E-value=2.4e-14 Score=131.78 Aligned_cols=82 Identities=16% Similarity=0.316 Sum_probs=75.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeee
Q 003036 142 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (854)
Q Consensus 142 ~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V 216 (854)
....+.++|||+|||+++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|+|..|.|++|+|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34567899999999999999999999999999999882 4678999999999999999999999999999999999
Q ss_pred eecCCCC
Q 003036 217 HYSIPKD 223 (854)
Q Consensus 217 ~~a~pk~ 223 (854)
.++.++.
T Consensus 101 ~~a~~k~ 107 (108)
T 2jrs_A 101 GHVTERT 107 (108)
T ss_dssp ECSCSSC
T ss_pred EEcccCC
Confidence 9998764
No 75
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.52 E-value=3.1e-14 Score=129.33 Aligned_cols=84 Identities=20% Similarity=0.394 Sum_probs=76.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceec---CCce
Q 003036 142 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLT---RSGK 213 (854)
Q Consensus 142 ~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L---~Gr~ 213 (854)
..+.+.++|||+|||.++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|++..+ .|++
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 35567899999999999999999999999999999983 467899999999999999999999999987 8999
Q ss_pred eeeeecCCCCCC
Q 003036 214 LDIHYSIPKDNP 225 (854)
Q Consensus 214 L~V~~a~pk~~~ 225 (854)
|+|.++.++...
T Consensus 88 l~v~~a~~~~~~ 99 (106)
T 2dgp_A 88 IQVKPADSESRG 99 (106)
T ss_dssp CEEEECCCCSCC
T ss_pred EEEEECCccccc
Confidence 999999876543
No 76
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.52 E-value=2.8e-14 Score=123.61 Aligned_cols=76 Identities=14% Similarity=0.214 Sum_probs=70.7
Q ss_pred cceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCc
Q 003036 233 GTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 307 (854)
Q Consensus 233 ~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk 307 (854)
.+|||+|||..+++++|+++|++||.|.++++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|.|++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 47999999999999999999999999999876 3556899999999999999999999999999999999999876
Q ss_pred h
Q 003036 308 G 308 (854)
Q Consensus 308 ~ 308 (854)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 77
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.52 E-value=1.8e-14 Score=128.20 Aligned_cols=80 Identities=15% Similarity=0.191 Sum_probs=72.3
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeee
Q 003036 141 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (854)
Q Consensus 141 p~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V 216 (854)
+..+.+.++|||+|||+++++++|+++|++||+|..|+. .++++|||||+|.+.++|++|++.|++..+.|++|+|
T Consensus 10 ~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 10 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp --CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 445567899999999999999999999999999999883 3567999999999999999999999999999999999
Q ss_pred eecC
Q 003036 217 HYSI 220 (854)
Q Consensus 217 ~~a~ 220 (854)
.|+.
T Consensus 90 ~~a~ 93 (95)
T 2ywk_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred EEcC
Confidence 9975
No 78
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=2.3e-14 Score=128.65 Aligned_cols=79 Identities=24% Similarity=0.433 Sum_probs=73.3
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~ 305 (854)
..++|||+|||..+++++|+++|++||.|.+|++ ++..++||||+|.+.++|.+|++.|||..|.|++|+|.+++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 86 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 86 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 4579999999999999999999999999999988 45568999999999999999999999999999999999998
Q ss_pred Cchh
Q 003036 306 LRGL 309 (854)
Q Consensus 306 pk~~ 309 (854)
++..
T Consensus 87 ~~~~ 90 (99)
T 1whw_A 87 IKKE 90 (99)
T ss_dssp CCST
T ss_pred CCcc
Confidence 8653
No 79
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4.4e-14 Score=130.71 Aligned_cols=83 Identities=18% Similarity=0.311 Sum_probs=75.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeee
Q 003036 142 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (854)
Q Consensus 142 ~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V 216 (854)
..+.+.++|||+|||+++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.+++ .|.|++|+|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 45667899999999999999999999999999999983 467899999999999999999999998 899999999
Q ss_pred eecCCCCCC
Q 003036 217 HYSIPKDNP 225 (854)
Q Consensus 217 ~~a~pk~~~ 225 (854)
.++.++...
T Consensus 91 ~~a~~~~~~ 99 (116)
T 2cqd_A 91 NLAYLGAKP 99 (116)
T ss_dssp EESTTTCCC
T ss_pred EEcccCCCc
Confidence 999766443
No 80
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=4.6e-14 Score=124.81 Aligned_cols=79 Identities=20% Similarity=0.296 Sum_probs=73.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCCC
Q 003036 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKD 223 (854)
Q Consensus 144 e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk~ 223 (854)
..+.++|||+|||+++++++|+++|++||+|..++.. +|||||+|.+.++|++|++.|++..+.|++|+|.|+.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKS 81 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCC
Confidence 4577999999999999999999999999999999863 8999999999999999999999999999999999998876
Q ss_pred CC
Q 003036 224 NP 225 (854)
Q Consensus 224 ~~ 225 (854)
..
T Consensus 82 ~~ 83 (90)
T 2dnq_A 82 KA 83 (90)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 81
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=2.8e-14 Score=129.14 Aligned_cols=81 Identities=22% Similarity=0.340 Sum_probs=74.1
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCceeEeeec---CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET---PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit---~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~p 306 (854)
....+|||+|||+.+++++|+++|++||.|..|++. +..++||||+|.+.++|.+|++.|||..|.|++|+|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 92 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecc
Confidence 356799999999999999999999999999998873 46789999999999999999999999999999999999998
Q ss_pred chhh
Q 003036 307 RGLR 310 (854)
Q Consensus 307 k~~R 310 (854)
+..+
T Consensus 93 ~~~~ 96 (103)
T 2d9p_A 93 KEER 96 (103)
T ss_dssp CCCC
T ss_pred cccC
Confidence 7644
No 82
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.52 E-value=2.6e-14 Score=136.06 Aligned_cols=83 Identities=16% Similarity=0.330 Sum_probs=76.0
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceee
Q 003036 141 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 215 (854)
Q Consensus 141 p~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~ 215 (854)
+....+.++|||+|||+++++++|+++|++||+|..|+. +++.+|||||+|.+.++|++|++.|++..|.|++|+
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 345567899999999999999999999999999999983 467899999999999999999999999999999999
Q ss_pred eeecCCCC
Q 003036 216 IHYSIPKD 223 (854)
Q Consensus 216 V~~a~pk~ 223 (854)
|.|+.++.
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99998764
No 83
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=5.1e-14 Score=127.81 Aligned_cols=83 Identities=13% Similarity=0.248 Sum_probs=75.3
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----C-ccccceEEEeeCCHHHHHHHHHHhcceecCCcee
Q 003036 141 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----A-SKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKL 214 (854)
Q Consensus 141 p~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----t-gksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L 214 (854)
+....+.++|||+|||+++++++|+++|++|| |..|++ + ++++|||||+|.+.++|++|+ .|++..|.|++|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 86 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRI 86 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEE
Confidence 44556789999999999999999999999999 999983 2 778999999999999999999 999999999999
Q ss_pred eeeecCCCCCC
Q 003036 215 DIHYSIPKDNP 225 (854)
Q Consensus 215 ~V~~a~pk~~~ 225 (854)
+|.++.++...
T Consensus 87 ~V~~a~~~~~~ 97 (104)
T 1wi8_A 87 RVDVADQAQDK 97 (104)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEccCCCCC
Confidence 99999887654
No 84
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=3.2e-14 Score=128.27 Aligned_cols=83 Identities=18% Similarity=0.326 Sum_probs=74.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCC
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 221 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~-~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~p 221 (854)
...+.++|||+|||+++++++|+++|++||.|..++ .+++.+|||||+|.+.++|++|++.|++..|.|++|+|.|+.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 456789999999999999999999999999995554 3678899999999999999999999999999999999999988
Q ss_pred CCCC
Q 003036 222 KDNP 225 (854)
Q Consensus 222 k~~~ 225 (854)
+...
T Consensus 91 ~~~~ 94 (101)
T 2fc9_A 91 RGSP 94 (101)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 85
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=3.6e-14 Score=123.68 Aligned_cols=79 Identities=18% Similarity=0.332 Sum_probs=72.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHh-cceecCCceeeeeec
Q 003036 141 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSL-QNKLTRSGKLDIHYS 219 (854)
Q Consensus 141 p~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~L-ng~~L~Gr~L~V~~a 219 (854)
+..+.+.++|||+|||+++++++|+++|++||.|..++. .+.+|||||+|.+.++|++|++.| ++..+.|++|+|.|+
T Consensus 6 ~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~-~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 6 SGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITV-VQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp CCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEE-EGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEE-ECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 345567899999999999999999999999999999986 346899999999999999999999 999999999999997
Q ss_pred C
Q 003036 220 I 220 (854)
Q Consensus 220 ~ 220 (854)
+
T Consensus 85 k 85 (85)
T 2ytc_A 85 R 85 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 86
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.6e-14 Score=129.85 Aligned_cols=79 Identities=23% Similarity=0.315 Sum_probs=72.4
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCceeEeee--cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCc
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE--TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 307 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri--t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk 307 (854)
....+|||+|||..+++++|+++|++||.|..|++ +..+++||||+|.+.++|++|++.||+..|.|++|+|+|++++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 99 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSG 99 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccC
Confidence 35579999999999999999999999999999887 4446899999999999999999999999999999999999875
Q ss_pred h
Q 003036 308 G 308 (854)
Q Consensus 308 ~ 308 (854)
.
T Consensus 100 ~ 100 (109)
T 1x4a_A 100 R 100 (109)
T ss_dssp C
T ss_pred C
Confidence 4
No 87
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.52 E-value=2.2e-14 Score=131.46 Aligned_cols=78 Identities=21% Similarity=0.172 Sum_probs=71.4
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCce--eCCeEEEEEeccCc
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRY--IAGKQIKLEPSHLR 307 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~--I~Gk~IkV~~a~pk 307 (854)
.++.+|||+|||.++++++|+++|++||.|.+|++. +.||+|||+|.+.++|.+|++.|++.. |.|++|+|+|++++
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~-~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVM-PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecccc
Confidence 356799999999999999999999999999999984 468999999999999999999999875 88999999999875
Q ss_pred h
Q 003036 308 G 308 (854)
Q Consensus 308 ~ 308 (854)
+
T Consensus 98 ~ 98 (100)
T 3r27_A 98 K 98 (100)
T ss_dssp C
T ss_pred c
Confidence 3
No 88
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4.2e-14 Score=127.97 Aligned_cols=81 Identities=28% Similarity=0.359 Sum_probs=73.5
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCceeEeeec---CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET---PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit---~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~p 306 (854)
....+|||+|||..+++++|+++|++||.|..|++. ..+++||||+|.+.++|.+|++.|||..|.|++|+|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence 356799999999999999999999999999998873 33679999999999999999999999999999999999988
Q ss_pred chhh
Q 003036 307 RGLR 310 (854)
Q Consensus 307 k~~R 310 (854)
+..+
T Consensus 93 ~~~~ 96 (103)
T 2cqi_A 93 PSSQ 96 (103)
T ss_dssp TTCC
T ss_pred Cccc
Confidence 6543
No 89
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=2.5e-14 Score=133.63 Aligned_cols=81 Identities=14% Similarity=0.150 Sum_probs=73.1
Q ss_pred CCCCCcEEEEcCCCCC-CCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcc--eecCCceeeeeec
Q 003036 143 DEHPSRTLLLRKINSN-IEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQN--KLTRSGKLDIHYS 219 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~-vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng--~~L~Gr~L~V~~a 219 (854)
...++++|||+|||++ +++++|+++|++||+|..|++ .+.||||||+|.+.++|++|++.|++ ..|.|++|+|.|+
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i-~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a 99 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYIL-MRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLS 99 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEE-ETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEE
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEE-ecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEC
Confidence 3567899999999998 999999999999999999997 46799999999999999999999875 4599999999999
Q ss_pred CCCCC
Q 003036 220 IPKDN 224 (854)
Q Consensus 220 ~pk~~ 224 (854)
.++..
T Consensus 100 ~~~~~ 104 (112)
T 1x4f_A 100 EKYKK 104 (112)
T ss_dssp CSCSS
T ss_pred ccccc
Confidence 87654
No 90
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=3.7e-14 Score=127.58 Aligned_cols=81 Identities=22% Similarity=0.340 Sum_probs=74.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCC
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk 222 (854)
...+.++|||+|||+++++++|+++|++||+|..|+. .+.+|||||+|.+.++|++|++.|++..|.|++|+|.|+.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~-~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFI-HKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEE-ETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEE-ecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 3457799999999999999999999999999999986 456899999999999999999999999999999999999876
Q ss_pred CC
Q 003036 223 DN 224 (854)
Q Consensus 223 ~~ 224 (854)
..
T Consensus 90 ~~ 91 (99)
T 2cpj_A 90 AS 91 (99)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 91
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.51 E-value=3.6e-14 Score=129.96 Aligned_cols=82 Identities=15% Similarity=0.307 Sum_probs=75.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeee
Q 003036 142 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (854)
Q Consensus 142 ~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V 216 (854)
....+.++|||+|||.++++++|+++|++||.|..|+. +++++|||||+|.+.++|++|++.|+|..|.|++|+|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34567799999999999999999999999999999983 4677999999999999999999999999999999999
Q ss_pred eecCCCC
Q 003036 217 HYSIPKD 223 (854)
Q Consensus 217 ~~a~pk~ 223 (854)
.|+.++.
T Consensus 101 ~~a~~~~ 107 (110)
T 1oo0_B 101 DWCFVKG 107 (110)
T ss_dssp EESEESS
T ss_pred EEcccCC
Confidence 9997764
No 92
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.51 E-value=3.9e-14 Score=123.30 Aligned_cols=75 Identities=25% Similarity=0.391 Sum_probs=69.8
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~ 305 (854)
..++|||+|||..+++++|+++|++||.|..|++ ++..+|||||+|.+.++|.+|++.|||..+.|++|+|+|++
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 4579999999999999999999999999999887 34478999999999999999999999999999999999985
No 93
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.51 E-value=4.4e-14 Score=126.42 Aligned_cols=79 Identities=15% Similarity=0.245 Sum_probs=73.1
Q ss_pred ccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 003036 232 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (854)
Q Consensus 232 ~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~p 306 (854)
.++|||+|||..+++++|+++|++||.|.+|++ ++.++|||||+|.+.++|.+|++.|||..|.|++|+|+|+++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 468999999999999999999999999999887 345689999999999999999999999999999999999998
Q ss_pred chhh
Q 003036 307 RGLR 310 (854)
Q Consensus 307 k~~R 310 (854)
+...
T Consensus 82 ~~~~ 85 (96)
T 2x1f_A 82 SDIS 85 (96)
T ss_dssp SSGG
T ss_pred CCCC
Confidence 7644
No 94
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.51 E-value=2.3e-14 Score=127.90 Aligned_cols=82 Identities=23% Similarity=0.332 Sum_probs=76.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCC
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk 222 (854)
.+.+.++|||+|||+++++++|+++|++||.|..+..+++++|||||+|.+.++|++|++.|++..|.|++|+|.++.++
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 45578999999999999999999999999999888777889999999999999999999999999999999999999876
Q ss_pred CC
Q 003036 223 DN 224 (854)
Q Consensus 223 ~~ 224 (854)
..
T Consensus 92 ~~ 93 (96)
T 1fjc_A 92 GG 93 (96)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 95
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.7e-14 Score=128.32 Aligned_cols=79 Identities=20% Similarity=0.225 Sum_probs=72.9
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a 304 (854)
....+|||+|||..+++++|+++|++||.|..|++ ++..+|||||+|.+.++|.+|++.|||..|.|++|+|+|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 35579999999999999999999999999999887 3456899999999999999999999999999999999999
Q ss_pred cCch
Q 003036 305 HLRG 308 (854)
Q Consensus 305 ~pk~ 308 (854)
+++.
T Consensus 93 ~~~~ 96 (103)
T 2cq0_A 93 KPST 96 (103)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8865
No 96
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.51 E-value=2.8e-14 Score=131.82 Aligned_cols=80 Identities=16% Similarity=0.313 Sum_probs=73.2
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a 304 (854)
....+|||+|||..+++++|+++|++||.|.+|++ ++..++||||+|.+.++|++|++.|||..|.|++|+|+|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 34579999999999999999999999999999877 4556799999999999999999999999999999999999
Q ss_pred cCchh
Q 003036 305 HLRGL 309 (854)
Q Consensus 305 ~pk~~ 309 (854)
+++..
T Consensus 103 ~~~~~ 107 (115)
T 2cpz_A 103 RSKND 107 (115)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 88653
No 97
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.51 E-value=1.6e-14 Score=130.80 Aligned_cols=76 Identities=21% Similarity=0.296 Sum_probs=68.0
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCc--eeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCc----eeCCeEE
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGE--IKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSR----YIAGKQI 299 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~--I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~----~I~Gk~I 299 (854)
.-.+|||+|||+.+|+++|+++|++||. |.+|++ ++.+||||||+|.+.++|.+|++.|||. .|+||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3468999999999999999999999995 556765 4667899999999999999999999997 5999999
Q ss_pred EEEeccC
Q 003036 300 KLEPSHL 306 (854)
Q Consensus 300 kV~~a~p 306 (854)
+|+|++.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999975
No 98
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.51 E-value=3.9e-14 Score=129.74 Aligned_cols=81 Identities=27% Similarity=0.370 Sum_probs=74.0
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a 304 (854)
....+|||+|||..+++++|+++|+.||.|..|++ ++.++|||||+|.+.++|.+|++.|||..|.|++|+|.|+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 34569999999999999999999999999999887 3456899999999999999999999999999999999999
Q ss_pred cCchhh
Q 003036 305 HLRGLR 310 (854)
Q Consensus 305 ~pk~~R 310 (854)
+++..+
T Consensus 104 ~~~~~~ 109 (110)
T 1oo0_B 104 FVKGPK 109 (110)
T ss_dssp EESSCC
T ss_pred ccCCCC
Confidence 887654
No 99
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=6.3e-14 Score=124.49 Aligned_cols=77 Identities=19% Similarity=0.318 Sum_probs=71.3
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a 304 (854)
....+|||+|||..+++++|+++|++||.|..|++ ++..++||||+|.+.++|.+|++.|||..|.|++|+|+|+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 35679999999999999999999999999999887 2566899999999999999999999999999999999998
Q ss_pred cC
Q 003036 305 HL 306 (854)
Q Consensus 305 ~p 306 (854)
+.
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 75
No 100
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.51 E-value=4.8e-14 Score=123.33 Aligned_cols=78 Identities=10% Similarity=0.267 Sum_probs=71.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe------CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeec
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR------ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~------tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a 219 (854)
..++|||+|||+++++++|+++|++||.|..+.. .++.+|||||+|.+.++|++|++.|+|..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 4689999999999999999999999999999983 1238999999999999999999999999999999999999
Q ss_pred CCCC
Q 003036 220 IPKD 223 (854)
Q Consensus 220 ~pk~ 223 (854)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 101
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=3.5e-14 Score=128.94 Aligned_cols=85 Identities=15% Similarity=0.263 Sum_probs=76.3
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceee
Q 003036 141 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 215 (854)
Q Consensus 141 p~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~ 215 (854)
+....+.++|||+|||+++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++. ++..|.|+.|.
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 10 NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp CCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 335567899999999999999999999999999999882 567899999999999999999998 99999999999
Q ss_pred eeecCCCCCCC
Q 003036 216 IHYSIPKDNPS 226 (854)
Q Consensus 216 V~~a~pk~~~~ 226 (854)
|.++.++....
T Consensus 89 V~~a~~~~~~~ 99 (105)
T 2dh8_A 89 PKPCTPRGMQP 99 (105)
T ss_dssp CCCSCCSSCCT
T ss_pred EEEccCCCCCC
Confidence 99998876543
No 102
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=4.4e-14 Score=134.57 Aligned_cols=82 Identities=21% Similarity=0.325 Sum_probs=74.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH----HHhhccCCeEEEEe--CccccceEEEeeCCHHHHHHHHHHhcceecCCceeee
Q 003036 143 DEHPSRTLLLRKINSNIEDSELK----ALFEQYGDVRTFYR--ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~----elFsqfG~I~sv~~--tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V 216 (854)
...++++|||+|||+.+++++|+ ++|++||+|..|.. +++++|||||+|.+.++|++|++.|+|..|.|++|+|
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 34578999999999999999876 69999999999884 5688999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 003036 217 HYSIPKDN 224 (854)
Q Consensus 217 ~~a~pk~~ 224 (854)
.|+.++..
T Consensus 105 ~~a~~~~~ 112 (127)
T 2a3j_A 105 TFSETPQS 112 (127)
T ss_dssp EECCCCCH
T ss_pred EEccCcch
Confidence 99987643
No 103
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.51 E-value=3e-14 Score=127.22 Aligned_cols=82 Identities=23% Similarity=0.461 Sum_probs=74.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH----HHhhccCCeEEEEe--CccccceEEEeeCCHHHHHHHHHHhcceecCCceeee
Q 003036 143 DEHPSRTLLLRKINSNIEDSELK----ALFEQYGDVRTFYR--ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~----elFsqfG~I~sv~~--tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V 216 (854)
...++++|||+|||+++++++|+ ++|++||.|..|+. +++++|||||+|.+.++|++|++.|+|..+.|++|+|
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 45678999999999999999999 99999999999984 3578999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 003036 217 HYSIPKDN 224 (854)
Q Consensus 217 ~~a~pk~~ 224 (854)
.|+.++..
T Consensus 84 ~~a~~~~~ 91 (97)
T 1nu4_A 84 QYAKTDSD 91 (97)
T ss_dssp EECSSCCT
T ss_pred EEccCCCc
Confidence 99987643
No 104
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=4.7e-14 Score=128.16 Aligned_cols=81 Identities=20% Similarity=0.358 Sum_probs=73.4
Q ss_pred cccccceeeecCCCCCCHHHHhhhhcccCceeEeeec------CCcccEEEEEeCCHHHHHHHHHHh-CCceeCCeEEEE
Q 003036 229 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET------PQKIHQKYIEFYDTRAAEAALREL-NSRYIAGKQIKL 301 (854)
Q Consensus 229 ~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit------~~skG~AFVeF~d~e~A~kAl~~L-NG~~I~Gk~IkV 301 (854)
.....+|||+|||..+++++|+++|++||.|..|++. +..++||||+|.+.++|.+|++.| |+..|.|++|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 3456799999999999999999999999999998873 335899999999999999999999 999999999999
Q ss_pred EeccCchh
Q 003036 302 EPSHLRGL 309 (854)
Q Consensus 302 ~~a~pk~~ 309 (854)
+|++++..
T Consensus 92 ~~a~~~~~ 99 (107)
T 2cph_A 92 EWADSEVT 99 (107)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99988653
No 105
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=4.8e-14 Score=127.66 Aligned_cols=83 Identities=18% Similarity=0.312 Sum_probs=75.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhc-cCCeEEEEe----CccccceEEEeeCCHHHHHHHHHHhccee-cCCceeee
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQ-YGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKL-TRSGKLDI 216 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsq-fG~I~sv~~----tgksKGfAFVeF~d~edA~kAl~~Lng~~-L~Gr~L~V 216 (854)
...+.++|||+|||+++++++|+++|++ ||.|..|+. +++++|||||+|.+.++|++|++.|++.. +.|++|+|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 4457899999999999999999999999 999999883 56789999999999999999999999999 99999999
Q ss_pred eecCCCCCC
Q 003036 217 HYSIPKDNP 225 (854)
Q Consensus 217 ~~a~pk~~~ 225 (854)
.++.++...
T Consensus 85 ~~a~~~~~~ 93 (104)
T 2dhg_A 85 SVAIPKASR 93 (104)
T ss_dssp CBCCCCCSC
T ss_pred EEccCCCcC
Confidence 999877544
No 106
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3.9e-14 Score=128.48 Aligned_cols=80 Identities=23% Similarity=0.281 Sum_probs=73.4
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a 304 (854)
....+|||+|||..+++++|+++|++||.|..|++ ++..+|||||+|.+.++|.+|++.|||..|.|++|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 35579999999999999999999999999999887 4557899999999999999999999999999999999999
Q ss_pred cCchh
Q 003036 305 HLRGL 309 (854)
Q Consensus 305 ~pk~~ 309 (854)
+++..
T Consensus 93 ~~~~~ 97 (105)
T 1x5u_A 93 SAHNK 97 (105)
T ss_dssp TTTSC
T ss_pred CCCCc
Confidence 88653
No 107
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=4.8e-14 Score=126.52 Aligned_cols=80 Identities=10% Similarity=0.287 Sum_probs=73.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeE-EEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCce----
Q 003036 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVR-TFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGK---- 213 (854)
Q Consensus 144 e~psrtLfVgNLP~~vTEedL~elFsqfG~I~-sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~---- 213 (854)
..++++|||+|||+++++++|+++|++||+|. .++. +++++|||||+|.+.++|++|++.|++..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 35689999999999999999999999999998 8772 5678999999999999999999999999999999
Q ss_pred eeeeecCCCC
Q 003036 214 LDIHYSIPKD 223 (854)
Q Consensus 214 L~V~~a~pk~ 223 (854)
|+|.|+.+..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999997654
No 108
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=6.6e-14 Score=125.65 Aligned_cols=81 Identities=16% Similarity=0.146 Sum_probs=72.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCC
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk 222 (854)
.....++|||+|||+++++++|+++|++||.|.....+++++|||||+|.+.++|++|++.|++..|.|++|+|.++.++
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 34557899999999999999999999999999633345788999999999999999999999999999999999999876
Q ss_pred C
Q 003036 223 D 223 (854)
Q Consensus 223 ~ 223 (854)
.
T Consensus 95 ~ 95 (97)
T 2e5j_A 95 R 95 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 109
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=4.1e-14 Score=125.89 Aligned_cols=78 Identities=28% Similarity=0.376 Sum_probs=71.9
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~ 305 (854)
...+|||+|||..+++++|+++|++||.|..|++ ++.+++||||+|.+.++|.+|++.|||..|.|++|+|++++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 3568999999999999999999999999999887 34568999999999999999999999999999999999998
Q ss_pred Cch
Q 003036 306 LRG 308 (854)
Q Consensus 306 pk~ 308 (854)
++.
T Consensus 84 ~~~ 86 (95)
T 2dnz_A 84 ERL 86 (95)
T ss_dssp CCC
T ss_pred ccc
Confidence 754
No 110
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.50 E-value=4.7e-14 Score=127.93 Aligned_cols=81 Identities=16% Similarity=0.199 Sum_probs=73.4
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCceeEeee----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCC---eEEEEE
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAG---KQIKLE 302 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~G---k~IkV~ 302 (854)
....+|||+|||..+++++|+++|++||.|..|++ ++.+++||||+|.+.++|++|++.|||..+.| ++|+|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 34679999999999999999999999999999887 34458999999999999999999999999998 999999
Q ss_pred eccCchhh
Q 003036 303 PSHLRGLR 310 (854)
Q Consensus 303 ~a~pk~~R 310 (854)
|++++..+
T Consensus 93 ~a~~~~~~ 100 (105)
T 2dnh_A 93 FADTDKES 100 (105)
T ss_dssp ESCSSCCC
T ss_pred ECccCccc
Confidence 99987644
No 111
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.8e-14 Score=128.72 Aligned_cols=79 Identities=24% Similarity=0.362 Sum_probs=72.8
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~ 305 (854)
...+|||+|||..+++++|+++|++||.|..|++ ++..++||||+|.+.++|++|++.|||..|.|++|+|.|++
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 90 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCC
Confidence 4579999999999999999999999999999887 34578999999999999999999999999999999999998
Q ss_pred Cchh
Q 003036 306 LRGL 309 (854)
Q Consensus 306 pk~~ 309 (854)
++..
T Consensus 91 ~~~~ 94 (102)
T 2cqb_A 91 PMRI 94 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8653
No 112
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.50 E-value=4e-14 Score=127.66 Aligned_cols=77 Identities=18% Similarity=0.222 Sum_probs=72.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCC
Q 003036 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk 222 (854)
...++|||+|||.++++++|+++|++||.|..++. .+++|||||+|.+.++|++|++.|++..+.|++|+|.|+.++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~-~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKH-YPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEE-ecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 45689999999999999999999999999999986 378999999999999999999999999999999999998764
No 113
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=8.8e-14 Score=123.46 Aligned_cols=76 Identities=26% Similarity=0.412 Sum_probs=70.2
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCceeEeeec-----CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET-----PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit-----~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a 304 (854)
...++|||+|||..+++++|+++|++||.|..|++. +..++||||+|.+.++|.+|++.|||..|.|++|+|+|+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 355799999999999999999999999999998872 456799999999999999999999999999999999998
Q ss_pred c
Q 003036 305 H 305 (854)
Q Consensus 305 ~ 305 (854)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 5
No 114
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.50 E-value=7.6e-14 Score=126.45 Aligned_cols=83 Identities=14% Similarity=0.298 Sum_probs=74.5
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceee
Q 003036 141 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 215 (854)
Q Consensus 141 p~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~ 215 (854)
+....+.++|||+|||+++++++|+++|++|| |..|++ +++++|||||+|.+.++|++|+ .|++..|.|++|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 86 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLR 86 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEE
Confidence 34556789999999999999999999999997 988872 4678999999999999999999 8999999999999
Q ss_pred eeecCCCCCC
Q 003036 216 IHYSIPKDNP 225 (854)
Q Consensus 216 V~~a~pk~~~ 225 (854)
|.++.++...
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2dng_A 87 VDIAEGRKQD 96 (103)
T ss_dssp EEECCCCCCC
T ss_pred EEEecCCCCC
Confidence 9999887544
No 115
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.50 E-value=2.5e-14 Score=129.53 Aligned_cols=78 Identities=15% Similarity=0.289 Sum_probs=69.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCC--eEEEE-----eCccccceEEEeeCCHHHHHHHHHHhcce----ecCCc
Q 003036 144 EHPSRTLLLRKINSNIEDSELKALFEQYGD--VRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNK----LTRSG 212 (854)
Q Consensus 144 e~psrtLfVgNLP~~vTEedL~elFsqfG~--I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~----~L~Gr 212 (854)
+..-.||||+|||+++|+++|+++|++||. |..|+ .++++||||||+|.+.++|++|++.|++. .|.||
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 445689999999999999999999999995 45665 36889999999999999999999999997 48999
Q ss_pred eeeeeecCC
Q 003036 213 KLDIHYSIP 221 (854)
Q Consensus 213 ~L~V~~a~p 221 (854)
+|.|.|++.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999864
No 116
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.50 E-value=4.1e-14 Score=126.60 Aligned_cols=73 Identities=22% Similarity=0.254 Sum_probs=69.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeec
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a 219 (854)
.+.-|||+||++.+||++|+++|.+||+|.+++. ..+||||||+|.++++|++|++.||+..+.|++|+|.++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l-~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHP-YLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEE-cCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 4678999999999999999999999999999996 458999999999999999999999999999999999987
No 117
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.50 E-value=1.6e-14 Score=128.15 Aligned_cols=77 Identities=13% Similarity=0.154 Sum_probs=65.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccC--CeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecC
Q 003036 148 RTLLLRKINSNIEDSELKALFEQYG--DVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (854)
Q Consensus 148 rtLfVgNLP~~vTEedL~elFsqfG--~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~ 220 (854)
.+|||+|||+++++++|+++|++|| .|..++ .+++++|||||+|.+.++|++|++.|+|..+.|++|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 888877 267899999999999999999999999999999999999998
Q ss_pred CCCC
Q 003036 221 PKDN 224 (854)
Q Consensus 221 pk~~ 224 (854)
++..
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7644
No 118
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=6.8e-14 Score=128.10 Aligned_cols=80 Identities=16% Similarity=0.191 Sum_probs=71.7
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHh--CCceeCCeEEEEEeccCc
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALREL--NSRYIAGKQIKLEPSHLR 307 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~L--NG~~I~Gk~IkV~~a~pk 307 (854)
.+..+|||+|||+.+++++|+++|++||.|.+|++.. .||||||+|.+.++|.+|++.| ++..|.|++|+|.|++++
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 91 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK-GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHK 91 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcc
Confidence 3567999999999999999999999999999998844 4899999999999999999987 567899999999999876
Q ss_pred hhh
Q 003036 308 GLR 310 (854)
Q Consensus 308 ~~R 310 (854)
..+
T Consensus 92 ~~~ 94 (101)
T 2cq1_A 92 ELK 94 (101)
T ss_dssp SCC
T ss_pred cCc
Confidence 533
No 119
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.50 E-value=6.3e-14 Score=130.65 Aligned_cols=82 Identities=21% Similarity=0.313 Sum_probs=75.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeec
Q 003036 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (854)
Q Consensus 144 e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a 219 (854)
..+.++|||+|||.++++++|+++|++||.|..|.. +++++|||||+|.+.++|++|++.|++..|.|++|+|.++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 456789999999999999999999999999988883 5678999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 003036 220 IPKDNP 225 (854)
Q Consensus 220 ~pk~~~ 225 (854)
.++...
T Consensus 84 ~~~~~~ 89 (116)
T 2fy1_A 84 KKPSFQ 89 (116)
T ss_dssp CCSSCS
T ss_pred CCCCCC
Confidence 876543
No 120
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4.3e-14 Score=130.13 Aligned_cols=81 Identities=16% Similarity=0.349 Sum_probs=74.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe---CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeee
Q 003036 142 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR---ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (854)
Q Consensus 142 ~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~---tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~ 218 (854)
....+.++|||+|||.++++++|+++|++||+|..|+. .+.++|||||+|.+.++|++|++.|+|..+.|++|+|.+
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34567899999999999999999999999999988883 345799999999999999999999999999999999999
Q ss_pred cCCC
Q 003036 219 SIPK 222 (854)
Q Consensus 219 a~pk 222 (854)
+.++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9875
No 121
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=2e-14 Score=132.91 Aligned_cols=79 Identities=18% Similarity=0.246 Sum_probs=71.6
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCC--ceeCCeEEEEEeccCch
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNS--RYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG--~~I~Gk~IkV~~a~pk~ 308 (854)
...+|||+|||+++++++|+++|++||+|++|++.. .||||||+|.+.++|++|++.|++ ..|.|++|+|.|++++.
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~-~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~ 93 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK-GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 93 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCC
Confidence 457899999999999999999999999999999854 489999999999999999999864 78999999999998865
Q ss_pred hh
Q 003036 309 LR 310 (854)
Q Consensus 309 ~R 310 (854)
.+
T Consensus 94 ~~ 95 (105)
T 1sjq_A 94 LK 95 (105)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 122
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.49 E-value=1.1e-13 Score=125.55 Aligned_cols=79 Identities=18% Similarity=0.370 Sum_probs=73.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCCC
Q 003036 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKD 223 (854)
Q Consensus 144 e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk~ 223 (854)
..+.++|||+|||+++++++|+++|++||.|..|+. .++||||+|.+.++|++|++.|++..|.|++|+|.|+.++.
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~---~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 84 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKK---LKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPD 84 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEE---CSSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE---ECCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCc
Confidence 456799999999999999999999999999999986 37899999999999999999999999999999999998876
Q ss_pred CC
Q 003036 224 NP 225 (854)
Q Consensus 224 ~~ 225 (854)
..
T Consensus 85 ~~ 86 (103)
T 2dgu_A 85 QK 86 (103)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 123
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=9.1e-14 Score=125.77 Aligned_cols=79 Identities=19% Similarity=0.354 Sum_probs=72.5
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCceeEeeec---CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET---PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit---~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~p 306 (854)
....+|||+|||..+++++|+++|++||.|..|++. ...++||||+|.+.++|.+|++.|||..|.|++|+|+++++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 456799999999999999999999999999998883 23589999999999999999999999999999999999988
Q ss_pred ch
Q 003036 307 RG 308 (854)
Q Consensus 307 k~ 308 (854)
+.
T Consensus 93 ~~ 94 (103)
T 2cq3_A 93 RV 94 (103)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 124
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.1e-13 Score=127.45 Aligned_cols=81 Identities=15% Similarity=0.153 Sum_probs=73.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeee
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~ 218 (854)
...+.++|||+|||+++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 4467899999999999999999999999999998872 456789999999999999999999999999999999999
Q ss_pred cCCCC
Q 003036 219 SIPKD 223 (854)
Q Consensus 219 a~pk~ 223 (854)
+.+..
T Consensus 91 a~~~~ 95 (114)
T 2do0_A 91 DERAL 95 (114)
T ss_dssp CSCCC
T ss_pred cccCC
Confidence 87543
No 125
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=5.8e-14 Score=126.67 Aligned_cols=83 Identities=18% Similarity=0.357 Sum_probs=75.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE--eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecC
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY--RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~--~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~ 220 (854)
...+.++|||+|||+++++++|+++|+.|+.|..++ .+++++|||||+|.+.++|++|++.|++..|.|++|+|.|+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 456789999999999999999999999999888777 467889999999999999999999999999999999999998
Q ss_pred CCCCC
Q 003036 221 PKDNP 225 (854)
Q Consensus 221 pk~~~ 225 (854)
++...
T Consensus 91 ~~~~~ 95 (102)
T 2fc8_A 91 PKGEG 95 (102)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 87654
No 126
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=6e-14 Score=129.05 Aligned_cols=84 Identities=21% Similarity=0.326 Sum_probs=75.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeE--------EEE-----eCccccceEEEeeCCHHHHHHHHHHhccee
Q 003036 142 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVR--------TFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKL 208 (854)
Q Consensus 142 ~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~--------sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~ 208 (854)
..+.+.++|||+|||+++++++|+++|++||.|. .|+ .+++++|||||+|.+.++|++|++.|++..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3456789999999999999999999999999998 466 246789999999999999999999999999
Q ss_pred cCCceeeeeecCCCCCC
Q 003036 209 TRSGKLDIHYSIPKDNP 225 (854)
Q Consensus 209 L~Gr~L~V~~a~pk~~~ 225 (854)
|.|++|+|.++.++...
T Consensus 90 ~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPPM 106 (113)
T ss_dssp ETTEECEEECSSCCCCS
T ss_pred cCCCEEEEEECCCCCCC
Confidence 99999999999887654
No 127
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.49 E-value=8e-14 Score=132.83 Aligned_cols=83 Identities=17% Similarity=0.346 Sum_probs=76.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeee
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~ 217 (854)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4567899999999999999999999999999999883 46789999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 003036 218 YSIPKDNP 225 (854)
Q Consensus 218 ~a~pk~~~ 225 (854)
++.++...
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99887554
No 128
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.49 E-value=6.7e-14 Score=129.12 Aligned_cols=81 Identities=19% Similarity=0.404 Sum_probs=73.6
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a 304 (854)
....+|||+|||..+++++|+++|+.||.|..|++ ++..+|||||+|.+.++|++|++.|||..|.|++|+|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 35579999999999999999999999999999887 3456899999999999999999999999999999999999
Q ss_pred cCchhh
Q 003036 305 HLRGLR 310 (854)
Q Consensus 305 ~pk~~R 310 (854)
+++..+
T Consensus 93 ~~~~~~ 98 (115)
T 2dgo_A 93 TRKPPA 98 (115)
T ss_dssp SCCCCC
T ss_pred cCCCCC
Confidence 886543
No 129
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=4.3e-14 Score=128.41 Aligned_cols=79 Identities=27% Similarity=0.431 Sum_probs=72.7
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a 304 (854)
....+|||+|||..+++++|+++|+.||.|..|++ ++.++|||||+|.+.++|.+|++.|||..|.|++|+|+|+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 34568999999999999999999999999999887 3556899999999999999999999999999999999999
Q ss_pred cCch
Q 003036 305 HLRG 308 (854)
Q Consensus 305 ~pk~ 308 (854)
+++.
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 8764
No 130
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.49 E-value=5.4e-14 Score=130.35 Aligned_cols=80 Identities=16% Similarity=0.237 Sum_probs=72.8
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceee
Q 003036 141 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 215 (854)
Q Consensus 141 p~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~ 215 (854)
+....+.++|||+|||+++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|++..|.|++|+
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 345567899999999999999999999999999999983 467899999999999999999999999999999999
Q ss_pred eeecC
Q 003036 216 IHYSI 220 (854)
Q Consensus 216 V~~a~ 220 (854)
|+|++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99863
No 131
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.49 E-value=4.2e-14 Score=123.64 Aligned_cols=77 Identities=27% Similarity=0.424 Sum_probs=70.7
Q ss_pred ccceeeecCCCCCCHHHHhhhhcccCceeEeeec-----CC-cccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 003036 232 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET-----PQ-KIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (854)
Q Consensus 232 ~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit-----~~-skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~ 305 (854)
..+|||+|||.++++++|+++|++||.|.+|++. +. .+|||||+|.+.++|.+|++.|||..|.|++|+|+++.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999998872 12 68999999999999999999999999999999999998
Q ss_pred Cch
Q 003036 306 LRG 308 (854)
Q Consensus 306 pk~ 308 (854)
+..
T Consensus 84 ~~~ 86 (88)
T 4a8x_A 84 APW 86 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 132
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=1.5e-13 Score=126.07 Aligned_cols=81 Identities=15% Similarity=0.178 Sum_probs=73.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCC-----ceeeee
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRS-----GKLDIH 217 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~G-----r~L~V~ 217 (854)
.....++|||+|||+++++++|+++|++||+|..|++... |||||+|.+.++|++|++.|++..|.| ++|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 3456799999999999999999999999999999985333 999999999999999999999999999 999999
Q ss_pred ecCCCCCC
Q 003036 218 YSIPKDNP 225 (854)
Q Consensus 218 ~a~pk~~~ 225 (854)
++.++...
T Consensus 89 ~a~~~~~~ 96 (108)
T 1x4c_A 89 VDGPRSPS 96 (108)
T ss_dssp ESSCCSCC
T ss_pred eCCCCCCC
Confidence 99887543
No 133
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.49 E-value=7.2e-14 Score=130.97 Aligned_cols=85 Identities=13% Similarity=0.336 Sum_probs=76.9
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceee
Q 003036 141 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 215 (854)
Q Consensus 141 p~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~ 215 (854)
+....+.++|||+|||+++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..|.|+.|.
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 345566899999999999999999999999999999983 677899999999999999999999999999999999
Q ss_pred eeecCCCCCC
Q 003036 216 IHYSIPKDNP 225 (854)
Q Consensus 216 V~~a~pk~~~ 225 (854)
|.|+.++...
T Consensus 96 v~~a~~~~~~ 105 (126)
T 3ex7_B 96 VDWCFVRGPP 105 (126)
T ss_dssp EEESEESSSC
T ss_pred EEEecCCCCC
Confidence 9999876543
No 134
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.49 E-value=6.1e-14 Score=126.15 Aligned_cols=79 Identities=18% Similarity=0.322 Sum_probs=71.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE--------EE-----eCccccceEEEeeCCHHHHHHHHHHhccee
Q 003036 142 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRT--------FY-----RASKHCGFVTISYYDIRAARNAMKSLQNKL 208 (854)
Q Consensus 142 ~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~s--------v~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~ 208 (854)
....+.++|||+|||+++++++|+++|++||.|.. ++ .+++++|||||+|.+.++|++|++.|+|..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34567899999999999999999999999999987 66 246789999999999999999999999999
Q ss_pred cCCceeeeeecC
Q 003036 209 TRSGKLDIHYSI 220 (854)
Q Consensus 209 L~Gr~L~V~~a~ 220 (854)
+.|++|+|.++.
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999873
No 135
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.49 E-value=1.2e-14 Score=165.04 Aligned_cols=145 Identities=19% Similarity=0.288 Sum_probs=103.3
Q ss_pred HHHHhhccCCeEEEEe-------CccccceE-----EEeeCCHHHHHHHHHHhcceecCCc-----------ee--eeee
Q 003036 164 LKALFEQYGDVRTFYR-------ASKHCGFV-----TISYYDIRAARNAMKSLQNKLTRSG-----------KL--DIHY 218 (854)
Q Consensus 164 L~elFsqfG~I~sv~~-------tgksKGfA-----FVeF~d~edA~kAl~~Lng~~L~Gr-----------~L--~V~~ 218 (854)
|.++|.++|+|..|.. ..+..+|+ |+.|....++..++..++......+ .+ .+..
T Consensus 9 L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~~ 88 (437)
T 3pgw_S 9 LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKM 88 (437)
T ss_pred HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 7899999999988731 11234444 7788776655544433222211111 00 0111
Q ss_pred cCCCCCCCcccccccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 003036 219 SIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRY 293 (854)
Q Consensus 219 a~pk~~~~~~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~ 293 (854)
..+............+|||+|||..+|+++|+++|+.||.|+.|.+ ++.++|||||+|.+.++|.+||+.|||..
T Consensus 89 ~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~ 168 (437)
T 3pgw_S 89 WDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKK 168 (437)
T ss_pred cCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCE
Confidence 1222222222234569999999999999999999999999999887 45578999999999999999999999999
Q ss_pred eCCeEEEEEeccCch
Q 003036 294 IAGKQIKLEPSHLRG 308 (854)
Q Consensus 294 I~Gk~IkV~~a~pk~ 308 (854)
|.|++|+|.|+.++.
T Consensus 169 i~gr~i~V~~a~~~~ 183 (437)
T 3pgw_S 169 IDGRRVLVDVERGRT 183 (437)
T ss_pred ECCEEEEEEEeCCCC
Confidence 999999999998754
No 136
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.49 E-value=4.7e-14 Score=131.44 Aligned_cols=77 Identities=19% Similarity=0.104 Sum_probs=70.7
Q ss_pred ccceeeecCCCCCCHHHHhhhhcccC-ceeEeee-cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCch
Q 003036 232 QGTLVVFNLDSSVSNDELHHIFGVYG-EIKEIRE-TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 232 ~~tLfV~NLp~svTeedLreiFs~fG-~I~~Vri-t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~ 308 (854)
..+|||+|||+++++++|+++|++|| +|..+++ ...++|||||+|.+.++|++|++.|||..|.|++|+|++++.+.
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~p 106 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNPP 106 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC--
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 35899999999999999999999999 8999888 35689999999999999999999999999999999999997654
No 137
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=6e-14 Score=129.27 Aligned_cols=83 Identities=17% Similarity=0.303 Sum_probs=75.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCe----EEEE-eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeee
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDV----RTFY-RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I----~sv~-~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~ 217 (854)
...++++|||+|||+++++++|+++|++||.| ..+. .+++++|||||+|.+.++|++|++.|++..|.|++|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 44578999999999999999999999999988 4444 578899999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 003036 218 YSIPKDNP 225 (854)
Q Consensus 218 ~a~pk~~~ 225 (854)
|+.++...
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpx_A 101 FGKNKKQR 108 (115)
T ss_dssp ECCCCSCC
T ss_pred EccCCCCC
Confidence 99887654
No 138
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.49 E-value=1.2e-13 Score=126.66 Aligned_cols=78 Identities=21% Similarity=0.398 Sum_probs=72.5
Q ss_pred CCCCCcEEEEcCCCCC-CCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCC
Q 003036 143 DEHPSRTLLLRKINSN-IEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 221 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~-vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~p 221 (854)
...+.++|||+|||++ +++++|+++|++||+|..|.. .+|||||+|.+.++|++|++.|++..|.|++|+|.++.+
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 4456789999999999 999999999999999999988 789999999999999999999999999999999999975
Q ss_pred CC
Q 003036 222 KD 223 (854)
Q Consensus 222 k~ 223 (854)
+.
T Consensus 100 ~~ 101 (110)
T 1wf1_A 100 PK 101 (110)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 139
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=3.3e-14 Score=126.70 Aligned_cols=79 Identities=20% Similarity=0.365 Sum_probs=72.2
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEe-ee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEI-RE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~V-ri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a 304 (854)
...+|||+|||..+++++|+++|++||.|..| ++ ++..++||||+|.+.++|++|++.|||..|.|++|+|+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 35689999999999999999999999999888 76 3446899999999999999999999999999999999999
Q ss_pred cCchh
Q 003036 305 HLRGL 309 (854)
Q Consensus 305 ~pk~~ 309 (854)
+++..
T Consensus 84 ~~~~~ 88 (96)
T 1x5t_A 84 FKKDS 88 (96)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 88653
No 140
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=8.3e-14 Score=127.37 Aligned_cols=81 Identities=19% Similarity=0.314 Sum_probs=74.0
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCceeEeeec-----CCcccEEEEEeCCHHHHHHHHHHhC------CceeCCeE
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET-----PQKIHQKYIEFYDTRAAEAALRELN------SRYIAGKQ 298 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit-----~~skG~AFVeF~d~e~A~kAl~~LN------G~~I~Gk~ 298 (854)
....+|||+|||..+++++|+++|+.||.|..|++. +.++|||||+|.+.++|.+|++.|| +..|.|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 345799999999999999999999999999998873 4578999999999999999999999 99999999
Q ss_pred EEEEeccCchhh
Q 003036 299 IKLEPSHLRGLR 310 (854)
Q Consensus 299 IkV~~a~pk~~R 310 (854)
|+|.|+.++..+
T Consensus 93 l~v~~a~~~~~~ 104 (111)
T 1x4h_A 93 LKVDLAVTRDEA 104 (111)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEECCCCccC
Confidence 999999887643
No 141
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.49 E-value=4e-14 Score=129.95 Aligned_cols=95 Identities=18% Similarity=0.303 Sum_probs=80.8
Q ss_pred CCceeeeeecCCCCCCCcccccccceeeecCCCC-CCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHH
Q 003036 210 RSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSS-VSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRE 288 (854)
Q Consensus 210 ~Gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~s-vTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~ 288 (854)
.|.+|.+..+.+.... .......+|||+|||.. +++++|+++|++||.|.+|++ .++||||+|.+.++|++|++.
T Consensus 6 ~g~~~~~~~s~~~~~~-~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~ 81 (110)
T 1wf1_A 6 SGMSLKLQASNVTNKN-DPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLG 81 (110)
T ss_dssp CSCCCCCCCCCSCCSC-CCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHH
T ss_pred CCcccccccCCCCCCC-CCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHH
Confidence 4667777666543322 22234579999999999 999999999999999999998 789999999999999999999
Q ss_pred hCCceeCCeEEEEEeccCch
Q 003036 289 LNSRYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 289 LNG~~I~Gk~IkV~~a~pk~ 308 (854)
|||..|.|++|+|+|++++.
T Consensus 82 l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 82 ENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp HTTCEETTEECCEEESCCCC
T ss_pred cCCCEECCeEEEEEECCCCC
Confidence 99999999999999998543
No 142
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=7.4e-14 Score=125.16 Aligned_cols=77 Identities=19% Similarity=0.242 Sum_probs=71.8
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeC--CeEEEEEeccCch
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIA--GKQIKLEPSHLRG 308 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~--Gk~IkV~~a~pk~ 308 (854)
...+|||+|||..+++++|+++|++||.|.+|++.. .++||||+|.+.++|++|++.|||..|. |++|+|+|++++.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~ 94 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVK-GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGP 94 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECS-SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeC-CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCC
Confidence 457999999999999999999999999999999844 4899999999999999999999999999 9999999998864
No 143
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=6.2e-14 Score=125.96 Aligned_cols=78 Identities=18% Similarity=0.333 Sum_probs=71.9
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~ 305 (854)
..++|||+|||..+++++|+++|++||.|.+|++ ++.++|||||+|.+.++|.+|++ ||+..|.|++|+|.+++
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~ 87 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAE 87 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECC
Confidence 4579999999999999999999999999999887 34578999999999999999998 99999999999999998
Q ss_pred Cchh
Q 003036 306 LRGL 309 (854)
Q Consensus 306 pk~~ 309 (854)
++..
T Consensus 88 ~~~~ 91 (99)
T 2dgs_A 88 PRDS 91 (99)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 8653
No 144
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.49 E-value=1.8e-14 Score=130.56 Aligned_cols=78 Identities=17% Similarity=0.198 Sum_probs=72.4
Q ss_pred CCCcEEEEcCCCC------CCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCC-c
Q 003036 145 HPSRTLLLRKINS------NIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRS-G 212 (854)
Q Consensus 145 ~psrtLfVgNLP~------~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~G-r 212 (854)
..+++|||+|||. ++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3468999999999 9999999999999999999982 48899999999999999999999999999999 9
Q ss_pred eeeeeecCCC
Q 003036 213 KLDIHYSIPK 222 (854)
Q Consensus 213 ~L~V~~a~pk 222 (854)
+|+|.++.++
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999998754
No 145
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=2.9e-14 Score=128.65 Aligned_cols=79 Identities=23% Similarity=0.422 Sum_probs=72.5
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~ 305 (854)
...+|||+|||..+++++|+++|++||.|..|++ ++..++||||+|.+.++|.+|++.|||..|.|++|+|+|++
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 90 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAG 90 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 4579999999999999999999999999999887 33468999999999999999999999999999999999998
Q ss_pred Cchh
Q 003036 306 LRGL 309 (854)
Q Consensus 306 pk~~ 309 (854)
++..
T Consensus 91 ~~~~ 94 (102)
T 1x5s_A 91 KSSD 94 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 146
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=2e-14 Score=130.00 Aligned_cols=82 Identities=22% Similarity=0.351 Sum_probs=74.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeee
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~ 217 (854)
.+.+.++|||+|||+++++++|+++|++||.|..++. +++++|||||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 83 (104)
T 1p1t_A 4 VDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 83 (104)
T ss_dssp SHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEE
T ss_pred cCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 3456799999999999999999999999999988872 56779999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 003036 218 YSIPKDN 224 (854)
Q Consensus 218 ~a~pk~~ 224 (854)
++.++..
T Consensus 84 ~a~~~~~ 90 (104)
T 1p1t_A 84 NAASEKN 90 (104)
T ss_dssp ETTCTTH
T ss_pred eCCCccc
Confidence 9987643
No 147
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=5e-14 Score=130.29 Aligned_cols=78 Identities=12% Similarity=0.197 Sum_probs=72.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCC
Q 003036 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (854)
Q Consensus 144 e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk 222 (854)
++..++|||+|||+++++++|+++|++||.|..|.+ .+.+|||||+|.+.++|++|++.|+|..+.|++|+|.|+...
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i-~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLL-PEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEC-CSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-eCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 345689999999999999999999999999999986 368999999999999999999999999999999999998653
No 148
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.3e-13 Score=121.97 Aligned_cols=80 Identities=15% Similarity=0.264 Sum_probs=73.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCC
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk 222 (854)
...+.++|||+|||+++++++|+++|++||.|..++.. ++||||+|.+.++|++|++.|++..+.|++|+|.++.++
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 34567999999999999999999999999999999873 669999999999999999999999999999999999877
Q ss_pred CCC
Q 003036 223 DNP 225 (854)
Q Consensus 223 ~~~ 225 (854)
...
T Consensus 82 ~~~ 84 (90)
T 2dnp_A 82 QKK 84 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 149
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.48 E-value=8.2e-14 Score=126.75 Aligned_cols=79 Identities=15% Similarity=0.307 Sum_probs=72.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeee
Q 003036 142 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (854)
Q Consensus 142 ~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~ 217 (854)
....+.++|||+|||+++++++|+++|++||.|..|+. +++++|||||+|.+.++|++|++.|++..|.|++|+|.
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999999998872 56789999999999999999999999999999999999
Q ss_pred ecC
Q 003036 218 YSI 220 (854)
Q Consensus 218 ~a~ 220 (854)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 974
No 150
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.48 E-value=5e-14 Score=125.69 Aligned_cols=80 Identities=28% Similarity=0.327 Sum_probs=74.2
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCchh
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGL 309 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~~ 309 (854)
....+|||+|||..+++++|+++|+.||.|..+..++.++|||||+|.+.++|.+|++.|||..|.|++|+|.+++++..
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 93 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGG 93 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 35679999999999999999999999999988866778899999999999999999999999999999999999987653
No 151
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.9e-13 Score=122.92 Aligned_cols=80 Identities=16% Similarity=0.308 Sum_probs=73.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcc--CCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecC
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQY--GDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqf--G~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~ 220 (854)
...+.++|||+|||+++++++|+++|++| |.|..++. .+|||||+|.+.++|++|++.|++..|.|++|+|.|+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK---IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE---CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE---eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 44578999999999999999999999999 99999875 57899999999999999999999999999999999998
Q ss_pred CCCCC
Q 003036 221 PKDNP 225 (854)
Q Consensus 221 pk~~~ 225 (854)
++...
T Consensus 88 ~~~~~ 92 (99)
T 2cpd_A 88 PVDKD 92 (99)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87543
No 152
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=5.6e-14 Score=129.07 Aligned_cols=76 Identities=18% Similarity=0.289 Sum_probs=69.5
Q ss_pred cccceeeecCCC-CCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCc--eeCCeEEEEEeccCc
Q 003036 231 NQGTLVVFNLDS-SVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSR--YIAGKQIKLEPSHLR 307 (854)
Q Consensus 231 ~~~tLfV~NLp~-svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~--~I~Gk~IkV~~a~pk 307 (854)
+..+|||+|||+ .+++++|+++|++||.|.+|++. ..++||||+|.+.++|.+|++.||+. .|.|++|+|.|++..
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLIL-NKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEEC-SSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 567999999999 99999999999999999999984 45799999999999999999999864 599999999999864
No 153
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.2e-13 Score=123.91 Aligned_cols=81 Identities=16% Similarity=0.204 Sum_probs=72.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHH----HHhhccCCeEEEEeC--ccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeee
Q 003036 145 HPSRTLLLRKINSNIEDSELK----ALFEQYGDVRTFYRA--SKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~----elFsqfG~I~sv~~t--gksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~ 218 (854)
...++|||+|||+++++++|+ ++|++||+|..|+.. ...+|||||+|.+.++|++|++.|+|..+.|++|+|.+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346899999999999999999 999999999999842 22289999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 003036 219 SIPKDNP 225 (854)
Q Consensus 219 a~pk~~~ 225 (854)
+.++...
T Consensus 87 a~~~~~~ 93 (96)
T 2dgx_A 87 ATGASGP 93 (96)
T ss_dssp CCCSSCC
T ss_pred cCCCCCC
Confidence 9876543
No 154
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.48 E-value=3.8e-14 Score=135.75 Aligned_cols=87 Identities=21% Similarity=0.366 Sum_probs=78.2
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCce
Q 003036 139 EHLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGK 213 (854)
Q Consensus 139 e~p~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~ 213 (854)
..+....+.++|||+|||+++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|++..|.|++
T Consensus 39 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 118 (135)
T 2lea_A 39 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 118 (135)
T ss_dssp CSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 33455667899999999999999999999999999999983 5678999999999999999999999999999999
Q ss_pred eeeeecCCCCCC
Q 003036 214 LDIHYSIPKDNP 225 (854)
Q Consensus 214 L~V~~a~pk~~~ 225 (854)
|+|.|+.++...
T Consensus 119 l~V~~a~~~~~~ 130 (135)
T 2lea_A 119 LRVQMARYGRPP 130 (135)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEECCCCCCC
Confidence 999999876544
No 155
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=6e-14 Score=126.97 Aligned_cols=78 Identities=23% Similarity=0.357 Sum_probs=72.3
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~ 305 (854)
...+|||+|||..+++++|+++|++||.|..|++ ++..++||||+|.+.++|++|++.|||..|.|++|+|++++
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVAR 91 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECS
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECC
Confidence 4579999999999999999999999999999887 25578999999999999999999999999999999999998
Q ss_pred Cch
Q 003036 306 LRG 308 (854)
Q Consensus 306 pk~ 308 (854)
++.
T Consensus 92 ~~~ 94 (103)
T 2dnm_A 92 YGR 94 (103)
T ss_dssp SCC
T ss_pred cCC
Confidence 754
No 156
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=5.4e-14 Score=129.75 Aligned_cols=80 Identities=19% Similarity=0.378 Sum_probs=73.3
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCceeEeeec-----CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET-----PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit-----~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a 304 (854)
...++|||+|||..+++++|+++|+.||.|..|++. +..+|||||+|.+.++|.+|+ .|||..|.|++|+|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 355699999999999999999999999999999883 567899999999999999999 99999999999999999
Q ss_pred cCchhh
Q 003036 305 HLRGLR 310 (854)
Q Consensus 305 ~pk~~R 310 (854)
+++..+
T Consensus 102 ~~~~~~ 107 (114)
T 2cq4_A 102 QAEKNR 107 (114)
T ss_dssp HHHHHH
T ss_pred CCCccC
Confidence 876644
No 157
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.48 E-value=1.4e-13 Score=124.17 Aligned_cols=77 Identities=18% Similarity=0.325 Sum_probs=71.8
Q ss_pred CCCCCcEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCC
Q 003036 143 DEHPSRTLLLRKINS-NIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 221 (854)
Q Consensus 143 ~e~psrtLfVgNLP~-~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~p 221 (854)
...++++|||+|||+ ++++++|+++|++||.|..++. .+|||||+|.+.++|++|++.|+|..+.|++|+|.++.+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE---CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 456789999999998 9999999999999999999987 489999999999999999999999999999999999876
Q ss_pred C
Q 003036 222 K 222 (854)
Q Consensus 222 k 222 (854)
+
T Consensus 95 ~ 95 (97)
T 2xnq_A 95 N 95 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 158
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=4.9e-14 Score=126.23 Aligned_cols=78 Identities=21% Similarity=0.354 Sum_probs=71.4
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeeec------C--CcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET------P--QKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLE 302 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit------~--~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~ 302 (854)
...+|||+|||..+++++|+++|++||.|..|++. + ..++||||+|.+.++|++|++.|||..|.|++|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 35689999999999999999999999999998873 1 567999999999999999999999999999999999
Q ss_pred eccCch
Q 003036 303 PSHLRG 308 (854)
Q Consensus 303 ~a~pk~ 308 (854)
+++++.
T Consensus 84 ~a~~~~ 89 (98)
T 2cpf_A 84 ISERAT 89 (98)
T ss_dssp CSSCSS
T ss_pred EccCCC
Confidence 998754
No 159
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.48 E-value=4.2e-14 Score=134.19 Aligned_cols=84 Identities=15% Similarity=0.273 Sum_probs=75.3
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE--EE-----eCccccceEEEeeCCHHHHHHHHHHhcce----ec
Q 003036 141 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRT--FY-----RASKHCGFVTISYYDIRAARNAMKSLQNK----LT 209 (854)
Q Consensus 141 p~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~s--v~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~----~L 209 (854)
+..+.+.++|||+|||+++++++|+++|++||.|.. |+ .++++||||||+|.+. +|.+|++.|++. .+
T Consensus 17 ~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 17 PSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 345567899999999999999999999999999965 65 3688999999999999 999999999999 99
Q ss_pred CCceeeeeecCCCCCC
Q 003036 210 RSGKLDIHYSIPKDNP 225 (854)
Q Consensus 210 ~Gr~L~V~~a~pk~~~ 225 (854)
.|++|+|.++.++...
T Consensus 96 ~gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 96 DGKTINVEFAKGSKRD 111 (131)
T ss_dssp GGCCCCCEECCCSCCC
T ss_pred CCEEEEEEECCCCCCC
Confidence 9999999999887543
No 160
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=6.2e-14 Score=124.53 Aligned_cols=80 Identities=16% Similarity=0.257 Sum_probs=72.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCC-eEEEEeCccccceEEEeeCCHHHHHHHHHHhcc-eecCCceeeeeecCC
Q 003036 144 EHPSRTLLLRKINSNIEDSELKALFEQYGD-VRTFYRASKHCGFVTISYYDIRAARNAMKSLQN-KLTRSGKLDIHYSIP 221 (854)
Q Consensus 144 e~psrtLfVgNLP~~vTEedL~elFsqfG~-I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng-~~L~Gr~L~V~~a~p 221 (854)
..+.++|||+|||+++++++|+++|++||. |..+.. .++|||||+|.+.++|++|++.|++ ..+.|++|+|.|+.+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL--LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE--EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE--cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 346789999999999999999999999999 665554 5789999999999999999999999 999999999999988
Q ss_pred CCCC
Q 003036 222 KDNP 225 (854)
Q Consensus 222 k~~~ 225 (854)
+...
T Consensus 83 ~~~~ 86 (93)
T 2cqh_A 83 KKLR 86 (93)
T ss_dssp CCCC
T ss_pred cccc
Confidence 7654
No 161
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.48 E-value=2.1e-14 Score=127.34 Aligned_cols=76 Identities=18% Similarity=0.177 Sum_probs=65.8
Q ss_pred cceeeecCCCCCCHHHHhhhhcccC--ceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 003036 233 GTLVVFNLDSSVSNDELHHIFGVYG--EIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (854)
Q Consensus 233 ~tLfV~NLp~svTeedLreiFs~fG--~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~ 305 (854)
.+|||+|||.++++++|+++|++|| .|.+|++ ++.++|||||+|.+.++|++|++.|||..|.|++|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 3799999999999999999999999 8988876 55678999999999999999999999999999999999998
Q ss_pred Cch
Q 003036 306 LRG 308 (854)
Q Consensus 306 pk~ 308 (854)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 754
No 162
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.48 E-value=9.2e-14 Score=123.58 Aligned_cols=76 Identities=18% Similarity=0.239 Sum_probs=70.3
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeee----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~p 306 (854)
...+|||+|||..+++++|+++|++||.|..|++ .+.+++||||+|.+.++|.+|++.|||..|.|++|+|+|++.
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPSS 94 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcCC
Confidence 4579999999999999999999999999999887 234579999999999999999999999999999999999875
No 163
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=6.4e-14 Score=123.87 Aligned_cols=75 Identities=25% Similarity=0.389 Sum_probs=71.0
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCch
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~ 308 (854)
..++|||+|||.++++++|+++|++||.|.+|++. ++||||+|.+.++|++|++.|||..|.|++|+|+|++++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKS 81 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCC
Confidence 45799999999999999999999999999999984 8999999999999999999999999999999999998764
No 164
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.47 E-value=1.3e-13 Score=125.92 Aligned_cols=80 Identities=10% Similarity=0.200 Sum_probs=73.1
Q ss_pred CCCCCcEEEEcCCCCCC------CHHHHHHHhhccCCeEEEEe---CccccceEEEeeCCHHHHHHHHHHhcceecCCc-
Q 003036 143 DEHPSRTLLLRKINSNI------EDSELKALFEQYGDVRTFYR---ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSG- 212 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~v------TEedL~elFsqfG~I~sv~~---tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr- 212 (854)
.+..+++|||+|||+.+ ++++|+++|++||.|..|+. +++++|||||+|.+.++|++|++.|+|..|.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 44567999999999999 78999999999999999983 567899999999999999999999999999999
Q ss_pred eeeeeecCCC
Q 003036 213 KLDIHYSIPK 222 (854)
Q Consensus 213 ~L~V~~a~pk 222 (854)
+|+|.++...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999998754
No 165
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.47 E-value=8.9e-14 Score=128.12 Aligned_cols=81 Identities=20% Similarity=0.382 Sum_probs=72.8
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecC
Q 003036 141 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (854)
Q Consensus 141 p~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~ 220 (854)
...+.+.++|||+|||+++++++|+++|++||.|..|+.. +|||||+|.+.++|++|++.|+|..+.|++|+|.|+.
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 101 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSK 101 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCS
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 3456778999999999999999999999999999999864 8999999999999999999999999999999999998
Q ss_pred CCCC
Q 003036 221 PKDN 224 (854)
Q Consensus 221 pk~~ 224 (854)
++..
T Consensus 102 ~~~~ 105 (108)
T 2jvo_A 102 LPAK 105 (108)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 7643
No 166
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1e-13 Score=123.13 Aligned_cols=76 Identities=24% Similarity=0.311 Sum_probs=70.9
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCch
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~ 308 (854)
....+|||+|||..+++++|+++|++||.|.+|++. ++||||+|.+.++|.+|++.|||..|.|++|+|+|++++.
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 355799999999999999999999999999999984 6699999999999999999999999999999999998764
No 167
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1.9e-13 Score=125.81 Aligned_cols=78 Identities=17% Similarity=0.182 Sum_probs=71.4
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeee----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~p 306 (854)
...+|||+|||..+++++|+++|++||.|.+|++ ++..++||||+|.+.++|++|++.|||..|.|++|+|++++.
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 93 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDER 93 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence 4579999999999999999999999999999877 344578999999999999999999999999999999999976
Q ss_pred ch
Q 003036 307 RG 308 (854)
Q Consensus 307 k~ 308 (854)
..
T Consensus 94 ~~ 95 (114)
T 2do0_A 94 AL 95 (114)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 168
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.47 E-value=7.8e-14 Score=125.08 Aligned_cols=80 Identities=19% Similarity=0.351 Sum_probs=71.9
Q ss_pred CCCCCcEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCC
Q 003036 143 DEHPSRTLLLRKINS-NIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 221 (854)
Q Consensus 143 ~e~psrtLfVgNLP~-~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~p 221 (854)
...++++|||+|||+ ++++++|+++|++||.|..+.. .+|||||+|.+.++|++|++.|++..+.|++|+|.++.+
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE---ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 346789999999998 9999999999999999999987 489999999999999999999999999999999999987
Q ss_pred CCCC
Q 003036 222 KDNP 225 (854)
Q Consensus 222 k~~~ 225 (854)
+...
T Consensus 83 ~~~~ 86 (96)
T 2kvi_A 83 NARP 86 (96)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 6543
No 169
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=7.9e-14 Score=125.20 Aligned_cols=78 Identities=22% Similarity=0.293 Sum_probs=71.0
Q ss_pred cccceeeecCCCCCCHHHHh----hhhcccCceeEeeecC--CcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 003036 231 NQGTLVVFNLDSSVSNDELH----HIFGVYGEIKEIRETP--QKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLr----eiFs~fG~I~~Vrit~--~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a 304 (854)
...+|||+|||..+++++|+ ++|++||.|.+|++.. ..++||||+|.+.++|.+|++.|||..|.|++|+|+++
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 34689999999999999999 9999999999998842 22899999999999999999999999999999999999
Q ss_pred cCch
Q 003036 305 HLRG 308 (854)
Q Consensus 305 ~pk~ 308 (854)
+++.
T Consensus 88 ~~~~ 91 (96)
T 2dgx_A 88 TGAS 91 (96)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 8754
No 170
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=4.9e-14 Score=127.41 Aligned_cols=84 Identities=21% Similarity=0.343 Sum_probs=75.9
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a 304 (854)
...++|||+|||..+++++|+++|+.||.|..|++ ++.++|||||+|.+.++|.+|++.|||..|.|++|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 35579999999999999999999999999999877 3456899999999999999999999999999999999999
Q ss_pred cCchhhhHh
Q 003036 305 HLRGLRKCL 313 (854)
Q Consensus 305 ~pk~~Rr~l 313 (854)
.++..++..
T Consensus 86 ~~~~~~~~~ 94 (104)
T 1p1t_A 86 ASEKNKEEL 94 (104)
T ss_dssp TCTTHHHHH
T ss_pred CCccchhhh
Confidence 998866533
No 171
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=6.1e-14 Score=128.99 Aligned_cols=78 Identities=23% Similarity=0.230 Sum_probs=70.5
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCc--eeCCeEEEEEeccCc
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSR--YIAGKQIKLEPSHLR 307 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~--~I~Gk~IkV~~a~pk 307 (854)
.+..+|||+|||+.+++++|+++|++||.|.+|++.. .|+||||+|.+.++|.+|++.|++. .|.|++|+|+|++++
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~ 91 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP-FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSK 91 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCc
Confidence 3567999999999999999999999999999998844 5899999999999999999999764 599999999999875
Q ss_pred h
Q 003036 308 G 308 (854)
Q Consensus 308 ~ 308 (854)
.
T Consensus 92 ~ 92 (104)
T 1wex_A 92 R 92 (104)
T ss_dssp S
T ss_pred c
Confidence 5
No 172
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=5e-14 Score=132.96 Aligned_cols=79 Identities=18% Similarity=0.246 Sum_probs=71.7
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCC--ceeCCeEEEEEeccCch
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNS--RYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG--~~I~Gk~IkV~~a~pk~ 308 (854)
+..+|||+|||+++++++|+++|++||.|++|++.. .||||||+|.+.++|.+|++.|++ ..|.|++|+|.|++++.
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~-~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~ 108 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK-GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 108 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEG-GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCC
Confidence 457899999999999999999999999999999843 489999999999999999999984 68999999999998866
Q ss_pred hh
Q 003036 309 LR 310 (854)
Q Consensus 309 ~R 310 (854)
.+
T Consensus 109 ~~ 110 (119)
T 2ad9_A 109 LK 110 (119)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 173
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=2.2e-13 Score=125.43 Aligned_cols=80 Identities=14% Similarity=0.252 Sum_probs=72.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CccccceEEEeeCCHHHHHHHHHHhcceec--------C
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLT--------R 210 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~----tgksKGfAFVeF~d~edA~kAl~~Lng~~L--------~ 210 (854)
.+.+.++|||+|||+++++++|+++|++||.|..|+. +++++|||||+|.+.++|++|++.|+|..| .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 4556799999999999999999999999999999883 567899999999999999999999999999 5
Q ss_pred CceeeeeecCCC
Q 003036 211 SGKLDIHYSIPK 222 (854)
Q Consensus 211 Gr~L~V~~a~pk 222 (854)
+++|.|.|+.|+
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999998764
No 174
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=4.5e-14 Score=123.20 Aligned_cols=76 Identities=18% Similarity=0.247 Sum_probs=70.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeec
Q 003036 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a 219 (854)
.++++|||+|||+++++++|+++|++||+|..++ .+++++|||||+|.+.++|++|++.|+|..+.|+.|++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 4679999999999999999999999999999988 25677999999999999999999999999999999998875
Q ss_pred C
Q 003036 220 I 220 (854)
Q Consensus 220 ~ 220 (854)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 175
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=8.6e-14 Score=128.07 Aligned_cols=79 Identities=19% Similarity=0.374 Sum_probs=72.3
Q ss_pred cccccceeeecCCCCCCHHHHhhhhcccCceeEeeec---CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 003036 229 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET---PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (854)
Q Consensus 229 ~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit---~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~ 305 (854)
....++|||+|||..+++++|+++|++||.|.+|++. ..++|||||+|.+.++|++|++.|||..|.|++|+|++++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 105 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 105 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 3456799999999999999999999999999998873 3358999999999999999999999999999999999998
Q ss_pred Cc
Q 003036 306 LR 307 (854)
Q Consensus 306 pk 307 (854)
++
T Consensus 106 ~~ 107 (109)
T 2err_A 106 AR 107 (109)
T ss_dssp CS
T ss_pred CC
Confidence 75
No 176
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.4e-13 Score=126.03 Aligned_cols=82 Identities=12% Similarity=0.195 Sum_probs=74.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCC
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk 222 (854)
...+.++|||+|||.++++++|+++|++||.|..|+.. ..+|||||+|.+.++|++|++.|++..|.|++|+|.|+.++
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF-PEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 34567999999999999999999999999999999863 34899999999999999999999999999999999999877
Q ss_pred CCC
Q 003036 223 DNP 225 (854)
Q Consensus 223 ~~~ 225 (854)
...
T Consensus 100 ~~~ 102 (109)
T 1x4g_A 100 PDM 102 (109)
T ss_dssp CSS
T ss_pred CCC
Confidence 543
No 177
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.47 E-value=7.3e-14 Score=133.12 Aligned_cols=81 Identities=23% Similarity=0.317 Sum_probs=73.8
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a 304 (854)
...++|||+|||.++++++|+++|+.||.|++|++ ++.++|||||+|.+.++|.+|++.|||..|.|++|+|+++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45579999999999999999999999999999887 3456899999999999999999999999999999999999
Q ss_pred cCchhh
Q 003036 305 HLRGLR 310 (854)
Q Consensus 305 ~pk~~R 310 (854)
+++..+
T Consensus 120 ~~~~~~ 125 (139)
T 1u6f_A 120 ASGHQR 125 (139)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 886543
No 178
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.47 E-value=7.9e-14 Score=128.46 Aligned_cols=79 Identities=27% Similarity=0.449 Sum_probs=72.5
Q ss_pred cccccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCch
Q 003036 229 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 229 ~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~ 308 (854)
.....+|||+|||..+++++|+++|++||.|..|++. +|||||+|.+.++|++|++.|||..|.|++|+|+|++++.
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 104 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPA 104 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCC
Confidence 3456799999999999999999999999999999985 8999999999999999999999999999999999998865
Q ss_pred hh
Q 003036 309 LR 310 (854)
Q Consensus 309 ~R 310 (854)
.|
T Consensus 105 ~r 106 (108)
T 2jvo_A 105 KR 106 (108)
T ss_dssp --
T ss_pred CC
Confidence 43
No 179
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=8.6e-14 Score=125.21 Aligned_cols=78 Identities=23% Similarity=0.333 Sum_probs=72.2
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCch
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~ 308 (854)
....+|||+|||..+++++|+++|++||.|..|++. ..++||||+|.+.++|.+|++.|||..|.|++|+|.|++++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEE-TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 355799999999999999999999999999999984 458999999999999999999999999999999999998754
No 180
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1e-13 Score=120.81 Aligned_cols=75 Identities=25% Similarity=0.391 Sum_probs=69.8
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHh-CCceeCCeEEEEEecc
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALREL-NSRYIAGKQIKLEPSH 305 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~L-NG~~I~Gk~IkV~~a~ 305 (854)
....+|||+|||..+++++|+++|++||.|.+|++. ..++||||+|.+.++|.+|++.| +|..+.|++|+|+|++
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~-~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVV-QRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEE-GGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEE-CCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 355799999999999999999999999999999984 36899999999999999999999 9999999999999985
No 181
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.47 E-value=7.1e-14 Score=126.96 Aligned_cols=80 Identities=15% Similarity=0.284 Sum_probs=72.8
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCcee---CCeEEEE
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYI---AGKQIKL 301 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I---~Gk~IkV 301 (854)
....+|||+|||..+++++|+++|++||.|.+|++ ++.+++||||+|.+.++|.+|++.|||..+ .|++|+|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 35579999999999999999999999999999887 345789999999999999999999999988 8999999
Q ss_pred EeccCchh
Q 003036 302 EPSHLRGL 309 (854)
Q Consensus 302 ~~a~pk~~ 309 (854)
.|++++..
T Consensus 91 ~~a~~~~~ 98 (106)
T 2dgp_A 91 KPADSESR 98 (106)
T ss_dssp EECCCCSC
T ss_pred EECCcccc
Confidence 99987653
No 182
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.6e-13 Score=123.44 Aligned_cols=76 Identities=20% Similarity=0.311 Sum_probs=71.1
Q ss_pred ccccceeeecCCCCCCHHHHhhhhccc--CceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCc
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVY--GEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 307 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~f--G~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk 307 (854)
....+|||+|||..+++++|+++|++| |.|..|++ .++||||+|.+.++|.+|++.|||..|.|++|+|+|++++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK---IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV 89 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE---CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE---eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 356799999999999999999999999 99999987 4789999999999999999999999999999999999876
Q ss_pred h
Q 003036 308 G 308 (854)
Q Consensus 308 ~ 308 (854)
.
T Consensus 90 ~ 90 (99)
T 2cpd_A 90 D 90 (99)
T ss_dssp C
T ss_pred C
Confidence 5
No 183
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.47 E-value=5.4e-14 Score=124.36 Aligned_cols=78 Identities=18% Similarity=0.187 Sum_probs=72.1
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeee---cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCc
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE---TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 307 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri---t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk 307 (854)
...+|||+|||..+++++|+++|++||.|..|++ ++..++||||+|.+.++|++|++.|||..|.|++|+|++++++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 86 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNA 86 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 4569999999999999999999999999999877 4557899999999999999999999999999999999999876
Q ss_pred h
Q 003036 308 G 308 (854)
Q Consensus 308 ~ 308 (854)
.
T Consensus 87 ~ 87 (92)
T 2dgv_A 87 S 87 (92)
T ss_dssp S
T ss_pred C
Confidence 4
No 184
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.47 E-value=1.1e-13 Score=128.19 Aligned_cols=76 Identities=14% Similarity=0.313 Sum_probs=69.6
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCceeEeeec-----CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET-----PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit-----~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a 304 (854)
....+|||+|||.++++++|+++|++||.|.+|++. +..+|||||+|.+.++|++|++.|||..|.|++|+|+|+
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 355799999999999999999999999999998872 456899999999999999999999999999999999997
Q ss_pred c
Q 003036 305 H 305 (854)
Q Consensus 305 ~ 305 (854)
+
T Consensus 118 k 118 (118)
T 2khc_A 118 K 118 (118)
T ss_dssp -
T ss_pred C
Confidence 5
No 185
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.46 E-value=1.1e-13 Score=121.44 Aligned_cols=76 Identities=20% Similarity=0.353 Sum_probs=70.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecC
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~ 220 (854)
..++|||+|||+++++++|+++|++||.|..++. +++++|||||+|.+.++|++|+ .|++..+.|++|+|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3589999999999999999999999999999872 5778999999999999999999 999999999999999987
Q ss_pred CC
Q 003036 221 PK 222 (854)
Q Consensus 221 pk 222 (854)
++
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 186
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.1e-13 Score=122.45 Aligned_cols=76 Identities=24% Similarity=0.322 Sum_probs=70.8
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCch
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~ 308 (854)
....+|||+|||..+++++|+++|++||.|..|++. ++||||+|.+.++|++|++.|||..|.|++|+|++++++.
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 345799999999999999999999999999999984 6699999999999999999999999999999999998754
No 187
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.46 E-value=8.6e-14 Score=126.23 Aligned_cols=77 Identities=21% Similarity=0.405 Sum_probs=72.0
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCchhh
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGLR 310 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~~R 310 (854)
..++|||+|||..+++++|+++|++||.|..|++. ++||||+|.+.++|.+|++.|||..|.|++|+|+|++++..+
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQK 86 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCccc
Confidence 45799999999999999999999999999999984 779999999999999999999999999999999999887644
No 188
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=8.6e-14 Score=128.36 Aligned_cols=81 Identities=12% Similarity=0.224 Sum_probs=73.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH---HHhhccCCeEEEEe--------CccccceEEEeeCCHHHHHHHHHHhcceecCC
Q 003036 143 DEHPSRTLLLRKINSNIEDSELK---ALFEQYGDVRTFYR--------ASKHCGFVTISYYDIRAARNAMKSLQNKLTRS 211 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~---elFsqfG~I~sv~~--------tgksKGfAFVeF~d~edA~kAl~~Lng~~L~G 211 (854)
.....++|||+|||+++++++|+ ++|++||+|..|+. .++++|||||+|.+.++|++|++.|++..|.|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34567899999999999999999 99999999999883 12456999999999999999999999999999
Q ss_pred ceeeeeecCCCC
Q 003036 212 GKLDIHYSIPKD 223 (854)
Q Consensus 212 r~L~V~~a~pk~ 223 (854)
++|+|.|+.++.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998875
No 189
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.46 E-value=1e-13 Score=127.63 Aligned_cols=79 Identities=29% Similarity=0.385 Sum_probs=72.5
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a 304 (854)
....+|||+|||..+++++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|++.|||..|.|++|+|+++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 35579999999999999999999999999999887 3456899999999999999999999999999999999999
Q ss_pred cCch
Q 003036 305 HLRG 308 (854)
Q Consensus 305 ~pk~ 308 (854)
+++.
T Consensus 104 ~~k~ 107 (108)
T 2jrs_A 104 TERT 107 (108)
T ss_dssp CSSC
T ss_pred ccCC
Confidence 8764
No 190
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.46 E-value=1.7e-13 Score=123.67 Aligned_cols=76 Identities=28% Similarity=0.378 Sum_probs=71.2
Q ss_pred ccccceeeecCCC-CCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCch
Q 003036 230 INQGTLVVFNLDS-SVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 230 ~~~~tLfV~NLp~-svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~ 308 (854)
...++|||+|||. .+++++|+++|+.||.|.+|++ .+|||||+|.+.++|.+|++.|||..+.|++|+|++++++.
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSNA 96 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE---CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCCC
Confidence 3567999999998 9999999999999999999998 48999999999999999999999999999999999998753
No 191
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.46 E-value=3.6e-14 Score=128.64 Aligned_cols=77 Identities=13% Similarity=0.137 Sum_probs=71.9
Q ss_pred ccceeeecCCC------CCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCC-eEE
Q 003036 232 QGTLVVFNLDS------SVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAG-KQI 299 (854)
Q Consensus 232 ~~tLfV~NLp~------svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~G-k~I 299 (854)
.++|||+|||. .+++++|+++|++||.|.+|++ ++.++|||||+|.+.++|.+|++.|||..|.| ++|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 46899999999 9999999999999999999887 36688999999999999999999999999999 999
Q ss_pred EEEeccCch
Q 003036 300 KLEPSHLRG 308 (854)
Q Consensus 300 kV~~a~pk~ 308 (854)
+|.++.++.
T Consensus 86 ~V~~a~~~~ 94 (100)
T 3ns6_A 86 FLYTMKDVE 94 (100)
T ss_dssp EEEESHHHH
T ss_pred EEEECchhh
Confidence 999998754
No 192
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2.9e-13 Score=122.42 Aligned_cols=82 Identities=15% Similarity=0.250 Sum_probs=73.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeee
Q 003036 142 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (854)
Q Consensus 142 ~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V 216 (854)
....+.++|||+|||+++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++ ++..|.|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 34567899999999999999999999999999999872 47789999999999999999998 477899999999
Q ss_pred eecCCCCCC
Q 003036 217 HYSIPKDNP 225 (854)
Q Consensus 217 ~~a~pk~~~ 225 (854)
.++.++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqg_A 88 KLPNSKQSQ 96 (103)
T ss_dssp ECCCTTCCC
T ss_pred EecCCCCcC
Confidence 999887654
No 193
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.46 E-value=7.9e-14 Score=126.12 Aligned_cols=79 Identities=14% Similarity=0.279 Sum_probs=69.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe------CccccceEEEeeCCHHHHHHHHHHhcceecCCceeee
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR------ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~------tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V 216 (854)
.....++|||+|||+++++++|+++|++|| |..|+. +++++|||||+|.+.++|++|+ .|++..|.|+.|+|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345679999999999999999999999999 999983 5668999999999999999999 89999999999999
Q ss_pred eecCCCC
Q 003036 217 HYSIPKD 223 (854)
Q Consensus 217 ~~a~pk~ 223 (854)
.++.++.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9998764
No 194
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=2e-13 Score=123.17 Aligned_cols=81 Identities=19% Similarity=0.258 Sum_probs=72.6
Q ss_pred cccccceeeecCCCCCCHHHHhhhhcccCceeEeee--cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 003036 229 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE--TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (854)
Q Consensus 229 ~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri--t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~p 306 (854)
.....+|||+|||..+++++|+++|+.|+.|.-++. ++..++||||+|.+.++|.+|++.|||..|.|++|+|+|+++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 91 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 345679999999999999999999999987766654 566789999999999999999999999999999999999988
Q ss_pred chh
Q 003036 307 RGL 309 (854)
Q Consensus 307 k~~ 309 (854)
+..
T Consensus 92 ~~~ 94 (102)
T 2fc8_A 92 KGE 94 (102)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 195
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.46 E-value=2.2e-13 Score=129.23 Aligned_cols=77 Identities=18% Similarity=0.347 Sum_probs=71.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeee
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~ 217 (854)
...+.++|||+|||+++++++|+++|++||+|..++. +++++|||||+|.+.++|++|++.|++..|.|++|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4457899999999999999999999999999999983 46789999999999999999999999999999999998
Q ss_pred ec
Q 003036 218 YS 219 (854)
Q Consensus 218 ~a 219 (854)
|+
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 85
No 196
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=3.8e-13 Score=120.69 Aligned_cols=80 Identities=14% Similarity=0.223 Sum_probs=73.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCC
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk 222 (854)
...+.++|||+|| ++++++|+++|++||+|..|.+ .+.+|||||+|.+.++|++|++.|++..|.|++|+|.|+.++
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i-~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe-cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 3457799999996 8999999999999999999997 688999999999999999999999999999999999999877
Q ss_pred CCC
Q 003036 223 DNP 225 (854)
Q Consensus 223 ~~~ 225 (854)
...
T Consensus 88 ~~~ 90 (97)
T 1x5p_A 88 PML 90 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 197
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.46 E-value=1.1e-13 Score=128.82 Aligned_cols=78 Identities=10% Similarity=0.076 Sum_probs=71.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEe-CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCC
Q 003036 145 HPSRTLLLRKINSNIEDSELKALFEQYG-DVRTFYR-ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~elFsqfG-~I~sv~~-tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk 222 (854)
...++|||+|||+++++++|+++|++|| +|..+.+ ..+++|||||+|.+.++|++|++.|+|..|.|++|+|.++...
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 3568999999999999999999999999 8999885 4678999999999999999999999999999999999998644
No 198
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=1e-13 Score=128.28 Aligned_cols=77 Identities=17% Similarity=0.222 Sum_probs=71.7
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCch
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~ 308 (854)
..++|||+|||..+++++|+++|++||.|..|++. ..++||||+|.+.++|.+|++.|||..|.|++|+|+|++...
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP-EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC-SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 45699999999999999999999999999999984 578999999999999999999999999999999999997643
No 199
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=7e-14 Score=125.22 Aligned_cols=79 Identities=11% Similarity=0.131 Sum_probs=70.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeee
Q 003036 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (854)
Q Consensus 144 e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~ 218 (854)
....++|||+|||+++++++|+++|++||.|..++ .+++++|||||+|.+.++|++|++.|++..|.|++|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 44578999999999999999999999999885332 4567899999999999999999999999999999999999
Q ss_pred cCCC
Q 003036 219 SIPK 222 (854)
Q Consensus 219 a~pk 222 (854)
+..+
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8654
No 200
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=1.8e-13 Score=126.22 Aligned_cols=79 Identities=16% Similarity=0.345 Sum_probs=71.5
Q ss_pred ccccceeeecCCCCCCHHHHh---hhhcccCceeEeeecC--------CcccEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 003036 230 INQGTLVVFNLDSSVSNDELH---HIFGVYGEIKEIRETP--------QKIHQKYIEFYDTRAAEAALRELNSRYIAGKQ 298 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLr---eiFs~fG~I~~Vrit~--------~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~ 298 (854)
....+|||+|||+.+++++|+ ++|++||.|.+|++.. .++|||||+|.+.++|++|++.|||..|.|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 345799999999999999999 9999999999988732 34589999999999999999999999999999
Q ss_pred EEEEeccCch
Q 003036 299 IKLEPSHLRG 308 (854)
Q Consensus 299 IkV~~a~pk~ 308 (854)
|+|+|+.++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998764
No 201
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.46 E-value=7.5e-14 Score=125.88 Aligned_cols=76 Identities=14% Similarity=0.197 Sum_probs=71.3
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCc
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 307 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk 307 (854)
..++|||+|||..+++++|+++|++||.|.+|++. ..+|||||+|.+.++|.+|++.|||..|.|++|+|.|++++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 34689999999999999999999999999999984 67899999999999999999999999999999999999864
No 202
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.2e-13 Score=126.95 Aligned_cols=80 Identities=21% Similarity=0.308 Sum_probs=72.4
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCcee--------Eeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIK--------EIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAG 296 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~--------~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~G 296 (854)
....+|||+|||..+++++|+++|++||.|. .|++ ++..+|||||+|.+.++|.+|++.|||..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 3567999999999999999999999999998 5666 35568999999999999999999999999999
Q ss_pred eEEEEEeccCchh
Q 003036 297 KQIKLEPSHLRGL 309 (854)
Q Consensus 297 k~IkV~~a~pk~~ 309 (854)
++|+|.+++++..
T Consensus 93 ~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 93 SKLKVSLARKKPP 105 (113)
T ss_dssp EECEEECSSCCCC
T ss_pred CEEEEEECCCCCC
Confidence 9999999988653
No 203
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.46 E-value=1.1e-13 Score=131.68 Aligned_cols=78 Identities=21% Similarity=0.341 Sum_probs=72.5
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~ 305 (854)
...+|||+|||..+++++|+++|++||.|..|++ ++..+|||||+|.+.++|++|++.|||..|.|++|+|+|++
T Consensus 45 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~ 124 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSI 124 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 4579999999999999999999999999999887 34678999999999999999999999999999999999998
Q ss_pred Cch
Q 003036 306 LRG 308 (854)
Q Consensus 306 pk~ 308 (854)
++.
T Consensus 125 ~~~ 127 (129)
T 2kxn_B 125 TKR 127 (129)
T ss_dssp SSS
T ss_pred CCC
Confidence 764
No 204
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.46 E-value=2.3e-13 Score=127.49 Aligned_cols=83 Identities=16% Similarity=0.299 Sum_probs=75.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeee
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~ 218 (854)
...++++|||+|||+++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|++..+.|++|+|.+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3456799999999999999999999999999998883 466899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 003036 219 SIPKDNP 225 (854)
Q Consensus 219 a~pk~~~ 225 (854)
+.+....
T Consensus 111 a~~~~~~ 117 (124)
T 2kt5_A 111 VASQIDL 117 (124)
T ss_dssp ECCTTCC
T ss_pred eCCCCCC
Confidence 9876543
No 205
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.46 E-value=2.2e-13 Score=132.61 Aligned_cols=82 Identities=20% Similarity=0.344 Sum_probs=75.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeee
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~ 217 (854)
...+.++|||+|||+++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3457899999999999999999999999999999984 57789999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 003036 218 YSIPKDN 224 (854)
Q Consensus 218 ~a~pk~~ 224 (854)
|+.++..
T Consensus 115 ~a~~~~~ 121 (156)
T 1h2v_Z 115 WDAGFKE 121 (156)
T ss_dssp EESCCCT
T ss_pred ECCCCCC
Confidence 9987654
No 206
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.1e-13 Score=126.73 Aligned_cols=77 Identities=21% Similarity=0.311 Sum_probs=72.1
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCch
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~ 308 (854)
...+|||+|||..+++++|+++|++||.|..|++... ++||||+|.+.++|.+|++.|||..|.|++|+|.|++++.
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCC
Confidence 4569999999999999999999999999999998543 8999999999999999999999999999999999998865
No 207
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.45 E-value=1.1e-13 Score=121.45 Aligned_cols=76 Identities=25% Similarity=0.407 Sum_probs=70.1
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~ 305 (854)
..++|||+|||..+++++|+++|+.||.|..|++ ++.++|||||+|.+.++|.+|+ .|||..|.|++|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4578999999999999999999999999999877 4556899999999999999999 999999999999999997
Q ss_pred Cc
Q 003036 306 LR 307 (854)
Q Consensus 306 pk 307 (854)
++
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 63
No 208
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=1.4e-13 Score=124.02 Aligned_cols=79 Identities=32% Similarity=0.372 Sum_probs=71.4
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCceeEeee-cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCch
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~ 308 (854)
....+|||+|||..+++++|+++|++||.|.-++. ++..++||||+|.+.++|++|++.|||..|.|++|+|+|++++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRG 92 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCC
Confidence 35679999999999999999999999999955443 56678999999999999999999999999999999999998764
No 209
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.45 E-value=1.5e-13 Score=120.37 Aligned_cols=76 Identities=14% Similarity=0.286 Sum_probs=69.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeee
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~ 217 (854)
.+.+.++|||+|||+++++++|+++|++||.|..++. +++++|||||+|.+.++|++|++ +++..+.|++|+|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 4567899999999999999999999999999999883 47789999999999999999995 58888999999998
Q ss_pred ec
Q 003036 218 YS 219 (854)
Q Consensus 218 ~a 219 (854)
++
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 210
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.5e-13 Score=124.77 Aligned_cols=77 Identities=22% Similarity=0.251 Sum_probs=71.1
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeeec------CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET------PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit------~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a 304 (854)
...+|||+|||..+++++|+++|+.|| |.+|++. +..+|||||+|.+.++|++|+ .||+..|.|++|+|+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEc
Confidence 457999999999999999999999999 9998873 566899999999999999999 99999999999999999
Q ss_pred cCchh
Q 003036 305 HLRGL 309 (854)
Q Consensus 305 ~pk~~ 309 (854)
+++..
T Consensus 92 ~~~~~ 96 (104)
T 1wi8_A 92 DQAQD 96 (104)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 88654
No 211
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.45 E-value=2.8e-13 Score=131.70 Aligned_cols=83 Identities=22% Similarity=0.399 Sum_probs=76.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeee
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~ 217 (854)
...+.++|||+|||+++++++|+++|++||.|..|+. +++++|||||+|.+.++|++|++.|+|..|.|++|+|.
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456799999999999999999999999999999982 67899999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 003036 218 YSIPKDNP 225 (854)
Q Consensus 218 ~a~pk~~~ 225 (854)
|+.++...
T Consensus 146 ~a~~~~~~ 153 (158)
T 2kn4_A 146 MARYGRPP 153 (158)
T ss_dssp EECCSSCC
T ss_pred ECCCCCCC
Confidence 99876544
No 212
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=9.6e-14 Score=124.58 Aligned_cols=78 Identities=13% Similarity=0.158 Sum_probs=70.5
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCch
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~ 308 (854)
...+|||+|||..+++++|+++|++||.|....+++..+|||||+|.+.++|.+|++.|||..|.|++|+|++++++.
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 456999999999999999999999999996322356789999999999999999999999999999999999998764
No 213
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=2e-13 Score=124.64 Aligned_cols=81 Identities=17% Similarity=0.193 Sum_probs=73.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCC-eEEEEe------CccccceEEEeeCCHHHHHHHHHHhc--ceecCCceee
Q 003036 145 HPSRTLLLRKINSNIEDSELKALFEQYGD-VRTFYR------ASKHCGFVTISYYDIRAARNAMKSLQ--NKLTRSGKLD 215 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~elFsqfG~-I~sv~~------tgksKGfAFVeF~d~edA~kAl~~Ln--g~~L~Gr~L~ 215 (854)
.+.++|||+|||+++++++|+++|++||. |..+.. +++++|||||+|.+.++|++|++.|+ +..+.|++|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 46799999999999999999999999998 999984 24789999999999999999999996 5899999999
Q ss_pred eeecCCCCCC
Q 003036 216 IHYSIPKDNP 225 (854)
Q Consensus 216 V~~a~pk~~~ 225 (854)
|.|+.++...
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999887654
No 214
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.45 E-value=1.6e-13 Score=123.35 Aligned_cols=75 Identities=24% Similarity=0.323 Sum_probs=69.3
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeE--------eee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKE--------IRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGK 297 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~--------Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk 297 (854)
...+|||+|||.++++++|+++|++||.|.+ |++ ++..+|||||+|.+.++|.+|++.|||..+.|+
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~ 91 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 91 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 4579999999999999999999999999998 776 355689999999999999999999999999999
Q ss_pred EEEEEecc
Q 003036 298 QIKLEPSH 305 (854)
Q Consensus 298 ~IkV~~a~ 305 (854)
+|+|++++
T Consensus 92 ~l~V~~A~ 99 (99)
T 2la6_A 92 PIKVSFAT 99 (99)
T ss_dssp BCEEEECC
T ss_pred EEEEEecC
Confidence 99999974
No 215
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.45 E-value=1.1e-13 Score=120.03 Aligned_cols=70 Identities=11% Similarity=0.276 Sum_probs=65.2
Q ss_pred CcEEEEcCCCCCC------CHHHHHHHhhccCCeEEEE---eCccccceEEEeeCCHHHHHHHHHHhcceecCCc-eeee
Q 003036 147 SRTLLLRKINSNI------EDSELKALFEQYGDVRTFY---RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSG-KLDI 216 (854)
Q Consensus 147 srtLfVgNLP~~v------TEedL~elFsqfG~I~sv~---~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr-~L~V 216 (854)
+++|||+|||..+ ++++|+++|++||+|..++ .+++++|||||+|.+.++|++|++.|+|..+.|+ +|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4799999999999 7799999999999999998 3567899999999999999999999999999999 8887
No 216
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.45 E-value=2.7e-13 Score=131.14 Aligned_cols=81 Identities=20% Similarity=0.330 Sum_probs=75.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCC
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk 222 (854)
...+.++|||+|||+++++++|+++|++||.|..|+....++|||||+|.+.++|++|++.|+|..|.|++|+|.|+.++
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 44577999999999999999999999999999999976668999999999999999999999999999999999999876
Q ss_pred C
Q 003036 223 D 223 (854)
Q Consensus 223 ~ 223 (854)
.
T Consensus 149 ~ 149 (150)
T 2i2y_A 149 K 149 (150)
T ss_dssp C
T ss_pred C
Confidence 3
No 217
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.45 E-value=1.1e-13 Score=123.51 Aligned_cols=80 Identities=23% Similarity=0.341 Sum_probs=73.3
Q ss_pred cccceeeecCCCCCCHHHHh----hhhcccCceeEeeec--CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 003036 231 NQGTLVVFNLDSSVSNDELH----HIFGVYGEIKEIRET--PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLr----eiFs~fG~I~~Vrit--~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a 304 (854)
+..+|||+|||..+++++|+ ++|++||.|..|++. +..+|||||+|.+.++|.+|++.|||..+.|++|+|+|+
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA 86 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45799999999999999999 999999999999873 356899999999999999999999999999999999999
Q ss_pred cCchhh
Q 003036 305 HLRGLR 310 (854)
Q Consensus 305 ~pk~~R 310 (854)
+++..+
T Consensus 87 ~~~~~~ 92 (97)
T 1nu4_A 87 KTDSDI 92 (97)
T ss_dssp SSCCTH
T ss_pred cCCCcc
Confidence 987643
No 218
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=1.7e-13 Score=125.65 Aligned_cols=76 Identities=18% Similarity=0.197 Sum_probs=70.9
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCC-----eEEEEEecc
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAG-----KQIKLEPSH 305 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~G-----k~IkV~~a~ 305 (854)
...+|||+|||.++++++|+++|++||.|..|++... +||||+|.+.++|++||+.|||..|.| ++|+|++++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~ 91 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 91 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCC
Confidence 4569999999999999999999999999999998544 999999999999999999999999999 999999998
Q ss_pred Cch
Q 003036 306 LRG 308 (854)
Q Consensus 306 pk~ 308 (854)
++.
T Consensus 92 ~~~ 94 (108)
T 1x4c_A 92 PRS 94 (108)
T ss_dssp CCS
T ss_pred CCC
Confidence 854
No 219
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=1.6e-13 Score=122.86 Aligned_cols=77 Identities=25% Similarity=0.224 Sum_probs=69.4
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~ 305 (854)
...+|||+|||..+++++|+++|++||.|..+++ ++.++|||||+|.+.++|++|++.|||..|.|++|+|++++
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 4568999999999999999999999999976443 45578999999999999999999999999999999999987
Q ss_pred Cc
Q 003036 306 LR 307 (854)
Q Consensus 306 pk 307 (854)
.+
T Consensus 94 ~~ 95 (98)
T 2cqp_A 94 GP 95 (98)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 220
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=2.3e-13 Score=120.41 Aligned_cols=79 Identities=9% Similarity=0.203 Sum_probs=71.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeee
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~ 218 (854)
.....++|||+|||+++++++|+++|++| .|..|+ .+++++|||||+|.+.++|++|++ |++..|.|+.|.|.+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 34567999999999999999999999999 888877 256789999999999999999999 999999999999999
Q ss_pred cCCCC
Q 003036 219 SIPKD 223 (854)
Q Consensus 219 a~pk~ 223 (854)
+.++.
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 98764
No 221
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.45 E-value=1.1e-13 Score=131.80 Aligned_cols=81 Identities=16% Similarity=0.263 Sum_probs=73.3
Q ss_pred cccceeeecCCCCCCHHHHh----hhhcccCceeEeee--cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 003036 231 NQGTLVVFNLDSSVSNDELH----HIFGVYGEIKEIRE--TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLr----eiFs~fG~I~~Vri--t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a 304 (854)
+..+|||+|||+.+++++|+ ++|++||.|.+|.+ ++.++|||||+|.+.++|.+|++.|||..|.|++|+|.|+
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a 107 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFS 107 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEc
Confidence 45689999999999999876 69999999999887 4578999999999999999999999999999999999999
Q ss_pred cCchhhh
Q 003036 305 HLRGLRK 311 (854)
Q Consensus 305 ~pk~~Rr 311 (854)
+++..+.
T Consensus 108 ~~~~~~~ 114 (127)
T 2a3j_A 108 ETPQSQV 114 (127)
T ss_dssp CCCCHHH
T ss_pred cCcchhc
Confidence 9876543
No 222
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.45 E-value=5.1e-14 Score=125.26 Aligned_cols=77 Identities=12% Similarity=0.137 Sum_probs=67.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeee
Q 003036 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (854)
Q Consensus 144 e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~ 218 (854)
..+.++|||+|||+++++++|+++|++||.|..++ .+++++|||||+|.+.++|++|++.|++..|.|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 34569999999999999999999999999885433 3567899999999999999999999999999999999998
Q ss_pred cC
Q 003036 219 SI 220 (854)
Q Consensus 219 a~ 220 (854)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 223
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.44 E-value=2.1e-13 Score=125.59 Aligned_cols=82 Identities=13% Similarity=0.287 Sum_probs=70.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeee
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~ 217 (854)
...+.++|||+|||+++++++|+++|++||.|..|+. +++++|||||+|.+.++|++|++.+ +..+.|+.|+|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 4456799999999999999999999999999999983 4778999999999999999999876 599999999999
Q ss_pred ecCCCCCC
Q 003036 218 YSIPKDNP 225 (854)
Q Consensus 218 ~a~pk~~~ 225 (854)
++.++...
T Consensus 100 ~a~~~~~~ 107 (109)
T 2rs2_A 100 VAFPRRAQ 107 (109)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99877543
No 224
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.44 E-value=2.2e-13 Score=123.41 Aligned_cols=77 Identities=19% Similarity=0.249 Sum_probs=70.2
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~ 305 (854)
...+|||+|||..+++++|+++|++|| |..|++ ++..+|||||+|.+.++|.+|+ .|||..|.|++|+|++++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAE 91 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEec
Confidence 457999999999999999999999997 998877 3556899999999999999999 899999999999999998
Q ss_pred Cchh
Q 003036 306 LRGL 309 (854)
Q Consensus 306 pk~~ 309 (854)
++..
T Consensus 92 ~~~~ 95 (103)
T 2dng_A 92 GRKQ 95 (103)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 225
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.44 E-value=2.2e-13 Score=123.85 Aligned_cols=75 Identities=21% Similarity=0.407 Sum_probs=69.7
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeee----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~ 305 (854)
...+|||+|||..+++++|+++|++||.|..|++ ++..++||||+|.+.++|++|++.|||..|.|++|+|+++.
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 4569999999999999999999999999999877 34568999999999999999999999999999999999985
No 226
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.44 E-value=1.1e-13 Score=128.94 Aligned_cols=78 Identities=26% Similarity=0.421 Sum_probs=71.9
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeee----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~p 306 (854)
...+|||+|||.++++++|+++|++||.|..|++ ++..+|||||+|.+.++|++|++.|||..|.|++|+|+++++
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 85 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKK 85 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 3468999999999999999999999999999887 345679999999999999999999999999999999999987
Q ss_pred ch
Q 003036 307 RG 308 (854)
Q Consensus 307 k~ 308 (854)
+.
T Consensus 86 ~~ 87 (116)
T 2fy1_A 86 PS 87 (116)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 227
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.2e-13 Score=127.27 Aligned_cols=80 Identities=26% Similarity=0.312 Sum_probs=71.9
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCcee----Eeee-cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIK----EIRE-TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~----~Vri-t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~ 305 (854)
...+|||+|||..+++++|+++|++||.|. .+++ ++..+|||||+|.+.++|.+|++.|||..|.|++|+|+|++
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 103 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGK 103 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEcc
Confidence 557999999999999999999999999983 4443 67789999999999999999999999999999999999998
Q ss_pred Cchhh
Q 003036 306 LRGLR 310 (854)
Q Consensus 306 pk~~R 310 (854)
++..+
T Consensus 104 ~~~~~ 108 (115)
T 2cpx_A 104 NKKQR 108 (115)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 86533
No 228
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.44 E-value=1.4e-13 Score=129.07 Aligned_cols=80 Identities=26% Similarity=0.400 Sum_probs=73.3
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~ 305 (854)
...+|||+|||..+++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..|.|++|+|+|+.
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 100 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 100 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEec
Confidence 4569999999999999999999999999999887 45568999999999999999999999999999999999998
Q ss_pred Cchhh
Q 003036 306 LRGLR 310 (854)
Q Consensus 306 pk~~R 310 (854)
++..+
T Consensus 101 ~~~~~ 105 (126)
T 3ex7_B 101 VRGPP 105 (126)
T ss_dssp ESSSC
T ss_pred CCCCC
Confidence 76543
No 229
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.44 E-value=4.8e-14 Score=131.83 Aligned_cols=76 Identities=24% Similarity=0.403 Sum_probs=70.3
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~ 305 (854)
...+|||+|||..+++++|+++|++||.|.+|++ ++.++|||||+|.+.++|.+|+ .|||..|.|++|+|++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4569999999999999999999999999999877 4567899999999999999999 899999999999999997
Q ss_pred Cc
Q 003036 306 LR 307 (854)
Q Consensus 306 pk 307 (854)
+.
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 230
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=9.5e-14 Score=123.36 Aligned_cols=77 Identities=22% Similarity=0.285 Sum_probs=69.8
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCc-eeEeeecCCcccEEEEEeCCHHHHHHHHHHhCC-ceeCCeEEEEEeccCch
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGE-IKEIRETPQKIHQKYIEFYDTRAAEAALRELNS-RYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~-I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG-~~I~Gk~IkV~~a~pk~ 308 (854)
..++|||+|||..+++++|+++|++||. |..+.+ .+++||||+|.+.++|++|++.||| ..|.|++|+|+|++++.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL--LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKK 84 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE--EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE--cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCcc
Confidence 4569999999999999999999999999 666655 3689999999999999999999999 99999999999998865
Q ss_pred h
Q 003036 309 L 309 (854)
Q Consensus 309 ~ 309 (854)
.
T Consensus 85 ~ 85 (93)
T 2cqh_A 85 L 85 (93)
T ss_dssp C
T ss_pred c
Confidence 3
No 231
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.44 E-value=1.1e-13 Score=124.05 Aligned_cols=77 Identities=27% Similarity=0.352 Sum_probs=71.3
Q ss_pred ccccceeeecCCC-CCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCch
Q 003036 230 INQGTLVVFNLDS-SVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 230 ~~~~tLfV~NLp~-svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~ 308 (854)
....+|||+|||. .+++++|+++|++||.|.+|++ .+|||||+|.+.++|.+|++.|||..+.|++|+|++++++.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE---ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 3567999999998 9999999999999999999998 48999999999999999999999999999999999998765
Q ss_pred h
Q 003036 309 L 309 (854)
Q Consensus 309 ~ 309 (854)
.
T Consensus 85 ~ 85 (96)
T 2kvi_A 85 R 85 (96)
T ss_dssp C
T ss_pred C
Confidence 3
No 232
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.44 E-value=2.3e-13 Score=132.49 Aligned_cols=80 Identities=23% Similarity=0.272 Sum_probs=73.7
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~ 305 (854)
...+|||+|||..+++++|+++|++||.|..|++ ++..++||||+|.+.++|++|++.||+..|.|++|+|+|++
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 117 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDA 117 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 5579999999999999999999999999999888 45578999999999999999999999999999999999998
Q ss_pred Cchhh
Q 003036 306 LRGLR 310 (854)
Q Consensus 306 pk~~R 310 (854)
+...+
T Consensus 118 ~~~~~ 122 (156)
T 1h2v_Z 118 GFKEG 122 (156)
T ss_dssp CCCTT
T ss_pred CCCCc
Confidence 76543
No 233
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=3.6e-13 Score=122.75 Aligned_cols=80 Identities=15% Similarity=0.164 Sum_probs=71.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE-EE----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeee
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRT-FY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~s-v~----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~ 217 (854)
.....++|||+|||+++++++|+++|++||.|.. |+ .+++++|||||+|.+.++|++|++. ++..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 3456789999999999999999999999999987 65 3678899999999999999999987 9999999999999
Q ss_pred ecCCCC
Q 003036 218 YSIPKD 223 (854)
Q Consensus 218 ~a~pk~ 223 (854)
++.++.
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 987654
No 234
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.8e-13 Score=126.58 Aligned_cols=79 Identities=22% Similarity=0.302 Sum_probs=71.8
Q ss_pred cccccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003036 229 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 303 (854)
Q Consensus 229 ~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~ 303 (854)
+...++|||+|||..+++++|+++|++||.|..|++ ++.+++||||+|.+.++|++|++.|++ .|.|++|+|++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 345679999999999999999999999999999887 345689999999999999999999998 89999999999
Q ss_pred ccCch
Q 003036 304 SHLRG 308 (854)
Q Consensus 304 a~pk~ 308 (854)
+.++.
T Consensus 93 a~~~~ 97 (116)
T 2cqd_A 93 AYLGA 97 (116)
T ss_dssp STTTC
T ss_pred cccCC
Confidence 97654
No 235
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.43 E-value=2.1e-13 Score=130.62 Aligned_cols=75 Identities=24% Similarity=0.342 Sum_probs=70.2
Q ss_pred ceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccE-EEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEeccCch
Q 003036 234 TLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQ-KYIEFYDTRAAEAALRELNSRYIAG--KQIKLEPSHLRG 308 (854)
Q Consensus 234 tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~-AFVeF~d~e~A~kAl~~LNG~~I~G--k~IkV~~a~pk~ 308 (854)
.|||+||++.+|+++|+++|++||+|.+|++..+.+++ |||+|.+.++|.+|++.|||..|.| ++|+|+|++++.
T Consensus 30 ~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred EEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 78899999999999999999999999999886666787 9999999999999999999999998 999999999864
No 236
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.43 E-value=7.1e-14 Score=126.03 Aligned_cols=76 Identities=28% Similarity=0.417 Sum_probs=71.4
Q ss_pred cceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCch
Q 003036 233 GTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 233 ~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~ 308 (854)
++|||+|||..+++++|+++|++||.|.+|++...+++||||+|.+.++|++|++.|||..+.|++|+|++++++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 3799999999999999999999999999999855579999999999999999999999999999999999998865
No 237
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.43 E-value=1.5e-13 Score=122.13 Aligned_cols=76 Identities=25% Similarity=0.256 Sum_probs=68.0
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~ 305 (854)
...+|||+|||..+++++|+++|++||.|..+++ ++..++||||+|.+.++|++|++.|||..|.|++|+|+++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 3479999999999999999999999999976544 45678999999999999999999999999999999999986
Q ss_pred C
Q 003036 306 L 306 (854)
Q Consensus 306 p 306 (854)
.
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 4
No 238
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1e-13 Score=125.44 Aligned_cols=80 Identities=20% Similarity=0.235 Sum_probs=73.4
Q ss_pred cccceeeecCCCCCCHHHHhhhhcc-cCceeEeee----cCCcccEEEEEeCCHHHHHHHHHHhCCce-eCCeEEEEEec
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGV-YGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRY-IAGKQIKLEPS 304 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~-fG~I~~Vri----t~~skG~AFVeF~d~e~A~kAl~~LNG~~-I~Gk~IkV~~a 304 (854)
...+|||+|||..+++++|+++|++ ||.|.+|++ ++.++|||||+|.+.++|.+|++.|||.. |.|++|+|+++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a 87 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 87 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEc
Confidence 4569999999999999999999999 999999887 45578999999999999999999999999 99999999999
Q ss_pred cCchhh
Q 003036 305 HLRGLR 310 (854)
Q Consensus 305 ~pk~~R 310 (854)
.++..+
T Consensus 88 ~~~~~~ 93 (104)
T 2dhg_A 88 IPKASR 93 (104)
T ss_dssp CCCCSC
T ss_pred cCCCcC
Confidence 887644
No 239
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.9e-13 Score=125.20 Aligned_cols=78 Identities=13% Similarity=0.229 Sum_probs=70.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeee
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~ 218 (854)
.+.+.++|||+|||+++|+++|+++|++||+|..|++ .++++|||||+|.+.++|++|+. +++..+.|+.|.|.+
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 3456799999999999999999999999999999983 36789999999999999999998 899999999999988
Q ss_pred cCC
Q 003036 219 SIP 221 (854)
Q Consensus 219 a~p 221 (854)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 643
No 240
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.6e-13 Score=126.85 Aligned_cols=80 Identities=13% Similarity=0.311 Sum_probs=73.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeec
Q 003036 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a 219 (854)
.+.++|||+|||+++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++. ++..|.|+.|+|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 45689999999999999999999999999988872 467899999999999999999987 999999999999999
Q ss_pred CCCCCC
Q 003036 220 IPKDNP 225 (854)
Q Consensus 220 ~pk~~~ 225 (854)
.++...
T Consensus 104 ~~~~~~ 109 (116)
T 1x4b_A 104 VAREES 109 (116)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 887654
No 241
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.43 E-value=2.2e-13 Score=120.25 Aligned_cols=76 Identities=16% Similarity=0.272 Sum_probs=70.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCC
Q 003036 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk 222 (854)
...++|||+|||+++++++|+++|++| .|..++. .+++|||||+|.+.++|++|++.|++..+.|++|+|.++..+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i-~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYV-DRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEE-EGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEE-eCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 356899999999999999999999999 9999887 389999999999999999999999999999999999998643
No 242
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.43 E-value=2.1e-13 Score=125.77 Aligned_cols=79 Identities=24% Similarity=0.374 Sum_probs=72.9
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeee--cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCch
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE--TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri--t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~ 308 (854)
...+|||+|||..+++++|+++|+.||.|..|++ .+..+|||||+|.+.++|.+|++.|||..+.|+.|+|.|+.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 86 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANR 86 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCh
Confidence 3568999999999999999999999999999887 45668999999999999999999999999999999999998755
Q ss_pred h
Q 003036 309 L 309 (854)
Q Consensus 309 ~ 309 (854)
.
T Consensus 87 ~ 87 (115)
T 3lqv_A 87 A 87 (115)
T ss_dssp H
T ss_pred h
Confidence 3
No 243
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.43 E-value=1.5e-13 Score=135.19 Aligned_cols=77 Identities=13% Similarity=0.201 Sum_probs=70.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccC--CeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeee
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQYG--DVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsqfG--~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~ 218 (854)
..++|||+|||+++++++|+++|++|| .|..|++ +++++|||||+|.+.++|++|++.|+|..|.|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 8998883 688999999999999999999999999999999999999
Q ss_pred cCCC
Q 003036 219 SIPK 222 (854)
Q Consensus 219 a~pk 222 (854)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8754
No 244
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.43 E-value=2.2e-13 Score=133.97 Aligned_cols=80 Identities=13% Similarity=0.234 Sum_probs=73.3
Q ss_pred ccceeeecCCCCCCHHHHhhhhcccC--ceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 003036 232 QGTLVVFNLDSSVSNDELHHIFGVYG--EIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (854)
Q Consensus 232 ~~tLfV~NLp~svTeedLreiFs~fG--~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a 304 (854)
..+|||+|||+.+++++|+++|+.|| .|.+|++ ++.++|||||+|.+.++|.+||+.|||..|.|++|+|.++
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 46899999999999999999999999 8999887 5667899999999999999999999999999999999999
Q ss_pred cCchhhh
Q 003036 305 HLRGLRK 311 (854)
Q Consensus 305 ~pk~~Rr 311 (854)
.++..++
T Consensus 135 ~~~~~~~ 141 (156)
T 3n9u_C 135 TRQNLSQ 141 (156)
T ss_dssp CHHHHHH
T ss_pred CCCcchh
Confidence 8876543
No 245
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=1.3e-13 Score=123.74 Aligned_cols=78 Identities=22% Similarity=0.342 Sum_probs=71.4
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCcee-Eeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeE----EE
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIK-EIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQ----IK 300 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~-~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~----Ik 300 (854)
..++|||+|||..+++++|+++|++||.|. +|++ ++.++|||||+|.+.++|++|++.|||..|.|+. |+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~ 87 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFK 87 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEE
Confidence 457999999999999999999999999999 8876 3456799999999999999999999999999999 99
Q ss_pred EEeccCch
Q 003036 301 LEPSHLRG 308 (854)
Q Consensus 301 V~~a~pk~ 308 (854)
|.|+++..
T Consensus 88 v~~a~~~~ 95 (99)
T 2div_A 88 LNYATYSG 95 (99)
T ss_dssp EEETTCCS
T ss_pred EeecCCCC
Confidence 99998753
No 246
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.2e-13 Score=127.29 Aligned_cols=78 Identities=18% Similarity=0.312 Sum_probs=71.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeee
Q 003036 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (854)
Q Consensus 144 e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~ 218 (854)
+...++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|+ .|++..|.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 345689999999999999999999999999999984 3778999999999999999999 9999999999999999
Q ss_pred cCCC
Q 003036 219 SIPK 222 (854)
Q Consensus 219 a~pk 222 (854)
+.++
T Consensus 101 a~~~ 104 (114)
T 2cq4_A 101 SQAE 104 (114)
T ss_dssp HHHH
T ss_pred cCCC
Confidence 8754
No 247
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.42 E-value=2.2e-13 Score=124.38 Aligned_cols=77 Identities=14% Similarity=0.172 Sum_probs=70.5
Q ss_pred cccceeeecCCCCC------CHHHHhhhhcccCceeEeee---cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe-EEE
Q 003036 231 NQGTLVVFNLDSSV------SNDELHHIFGVYGEIKEIRE---TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGK-QIK 300 (854)
Q Consensus 231 ~~~tLfV~NLp~sv------TeedLreiFs~fG~I~~Vri---t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk-~Ik 300 (854)
..++|||+|||..+ ++++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|++.|||..|.|+ +|+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~ 93 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 93 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEE
Confidence 45689999999999 78999999999999999887 446789999999999999999999999999998 999
Q ss_pred EEeccCc
Q 003036 301 LEPSHLR 307 (854)
Q Consensus 301 V~~a~pk 307 (854)
|.++...
T Consensus 94 V~~a~~~ 100 (105)
T 2nlw_A 94 VNLFTDF 100 (105)
T ss_dssp EECSCCC
T ss_pred EEEcchH
Confidence 9998754
No 248
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=1.1e-13 Score=129.21 Aligned_cols=77 Identities=21% Similarity=0.219 Sum_probs=70.0
Q ss_pred cccceeeecCCCC-CCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCC--ceeCCeEEEEEeccCc
Q 003036 231 NQGTLVVFNLDSS-VSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNS--RYIAGKQIKLEPSHLR 307 (854)
Q Consensus 231 ~~~tLfV~NLp~s-vTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG--~~I~Gk~IkV~~a~pk 307 (854)
+..+|||+|||++ +++++|+++|++||.|.+|++. ..||||||+|.+.++|.+|++.|++ ..|.|++|+|.|++.+
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~ 102 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM-RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKY 102 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSC
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccc
Confidence 5679999999998 9999999999999999999984 5689999999999999999999864 5699999999999875
Q ss_pred h
Q 003036 308 G 308 (854)
Q Consensus 308 ~ 308 (854)
.
T Consensus 103 ~ 103 (112)
T 1x4f_A 103 K 103 (112)
T ss_dssp S
T ss_pred c
Confidence 4
No 249
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=1.8e-13 Score=126.65 Aligned_cols=80 Identities=13% Similarity=0.232 Sum_probs=72.3
Q ss_pred cccccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003036 229 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 303 (854)
Q Consensus 229 ~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~ 303 (854)
....++|||+|||..+++++|+++|+.||.|..|++ ++..+|||||+|.+.++|.+|++. ++..|.|++|+|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 345579999999999999999999999999999887 345689999999999999999998 99999999999999
Q ss_pred ccCchh
Q 003036 304 SHLRGL 309 (854)
Q Consensus 304 a~pk~~ 309 (854)
++++..
T Consensus 103 a~~~~~ 108 (116)
T 1x4b_A 103 AVAREE 108 (116)
T ss_dssp CSSCCC
T ss_pred CCCCcc
Confidence 988653
No 250
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.42 E-value=5.9e-13 Score=124.68 Aligned_cols=78 Identities=18% Similarity=0.326 Sum_probs=71.7
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeee----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~p 306 (854)
...+|||+|||..+++++|+++|+.||.|.+|++ ++..+|||||+|.+.++|.+|++.|||..|.|++|+|+|+.+
T Consensus 34 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 113 (124)
T 2kt5_A 34 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS 113 (124)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCC
Confidence 4569999999999999999999999999999887 345789999999999999999999999999999999999987
Q ss_pred ch
Q 003036 307 RG 308 (854)
Q Consensus 307 k~ 308 (854)
..
T Consensus 114 ~~ 115 (124)
T 2kt5_A 114 QI 115 (124)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 251
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.42 E-value=1.1e-13 Score=124.81 Aligned_cols=81 Identities=14% Similarity=0.185 Sum_probs=71.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeec
Q 003036 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (854)
Q Consensus 144 e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a 219 (854)
..+.++|||+|||+++++++|+++|++||.|..+. .+++++|||||+|.+.++|++|++ |++..|.|+.|+|.++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 34678999999999999999999999999775511 457899999999999999999998 9999999999999999
Q ss_pred CCCCCC
Q 003036 220 IPKDNP 225 (854)
Q Consensus 220 ~pk~~~ 225 (854)
.++...
T Consensus 93 ~~~~~~ 98 (101)
T 1fj7_A 93 KGRDGT 98 (101)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 877543
No 252
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=5.1e-13 Score=119.83 Aligned_cols=75 Identities=19% Similarity=0.323 Sum_probs=70.2
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCch
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~ 308 (854)
...+|||+|+ .+++++|+++|++||.|..|++ ...++||||+|.+.++|.+|++.|||..|.|++|+|.|++++.
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i-~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 88 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCC
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe-cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 4579999996 8999999999999999999998 5789999999999999999999999999999999999998765
No 253
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=6.1e-13 Score=118.61 Aligned_cols=79 Identities=23% Similarity=0.308 Sum_probs=71.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE--eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCC
Q 003036 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY--RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~--~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk 222 (854)
...++|||+|||+++++++|+++|++||.|..++ ...+..+.|||+|.+.++|++|++.|++..|.|++|+|.++.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 4578999999999999999999999999999994 34445566999999999999999999999999999999999887
Q ss_pred C
Q 003036 223 D 223 (854)
Q Consensus 223 ~ 223 (854)
+
T Consensus 93 ~ 93 (96)
T 2e44_A 93 M 93 (96)
T ss_dssp C
T ss_pred c
Confidence 4
No 254
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.42 E-value=3e-13 Score=119.36 Aligned_cols=75 Identities=15% Similarity=0.284 Sum_probs=70.0
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCc
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 307 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk 307 (854)
...+|||+|||+.+++++|+++|++| .|.++++. .++|||||+|.+.++|++|++.|||..+.|++|+|+|+..+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 34689999999999999999999999 99999884 78999999999999999999999999999999999998653
No 255
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=4.3e-13 Score=125.71 Aligned_cols=80 Identities=13% Similarity=0.210 Sum_probs=71.5
Q ss_pred CCCCCcEEEE--cCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceec-----CCceee
Q 003036 143 DEHPSRTLLL--RKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLT-----RSGKLD 215 (854)
Q Consensus 143 ~e~psrtLfV--gNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L-----~Gr~L~ 215 (854)
...|+++||| +||++++++++|+++|++||+|..|.+ ...||||||+|.+.++|++|++.|||+.+ .|++|.
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i-~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~ 99 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLM-PPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 99 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEEC-CTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEE-eCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEE
Confidence 4467899999 779999999999999999999999986 34689999999999999999999999988 689999
Q ss_pred eeecCCCC
Q 003036 216 IHYSIPKD 223 (854)
Q Consensus 216 V~~a~pk~ 223 (854)
|.|+....
T Consensus 100 v~~a~~~p 107 (114)
T 2cq2_A 100 LNFVEKVQ 107 (114)
T ss_dssp EEEESCCC
T ss_pred EEecccCc
Confidence 99986543
No 256
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.42 E-value=7.1e-14 Score=123.27 Aligned_cols=76 Identities=20% Similarity=0.293 Sum_probs=67.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCC
Q 003036 148 RTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (854)
Q Consensus 148 rtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk 222 (854)
++|||+|||.++++++|+++|++||+|..++. +++++|||||+|.+.+ |++|++.|++..+.|++|+|.++.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999883 4778999999999999 99999999999999999999999876
Q ss_pred CC
Q 003036 223 DN 224 (854)
Q Consensus 223 ~~ 224 (854)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 44
No 257
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.41 E-value=1.8e-13 Score=116.64 Aligned_cols=70 Identities=14% Similarity=0.286 Sum_probs=65.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeec
Q 003036 149 TLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (854)
Q Consensus 149 tLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a 219 (854)
+|||+|||+++++++|+++|++||+|..++. +++++|||||+|.+.++|++|++ +++..+.|++|+|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5999999999999999999999999999882 57789999999999999999997 9999999999999875
No 258
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=2e-13 Score=123.87 Aligned_cols=79 Identities=27% Similarity=0.414 Sum_probs=72.0
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a 304 (854)
...++|||+|||..+++++|+++|++||.|.+|++ ++..+|||||+|.+.++|.+|++. ++..|.|++|+|+++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEc
Confidence 35579999999999999999999999999999887 345679999999999999999999 999999999999999
Q ss_pred cCchh
Q 003036 305 HLRGL 309 (854)
Q Consensus 305 ~pk~~ 309 (854)
.++..
T Consensus 93 ~~~~~ 97 (105)
T 2dh8_A 93 TPRGM 97 (105)
T ss_dssp CCSSC
T ss_pred cCCCC
Confidence 88653
No 259
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.41 E-value=3.7e-13 Score=133.61 Aligned_cols=76 Identities=25% Similarity=0.333 Sum_probs=69.9
Q ss_pred cceeeecCCCCCCHHHHhhhhcccCceeEeeec-CCcccEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEeccCch
Q 003036 233 GTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET-PQKIHQKYIEFYDTRAAEAALRELNSRYIAG--KQIKLEPSHLRG 308 (854)
Q Consensus 233 ~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit-~~skG~AFVeF~d~e~A~kAl~~LNG~~I~G--k~IkV~~a~pk~ 308 (854)
.+|||+||++.+++++|+++|++||+|++|++. ..+++||||+|.+.++|++|++.|||..|.| ++|+|+|++++.
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 479999999999999999999999999999884 4457899999999999999999999999965 999999999864
No 260
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1e-13 Score=120.93 Aligned_cols=76 Identities=17% Similarity=0.268 Sum_probs=69.1
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~ 305 (854)
...+|||+|||..+++++|+++|++||.|..|++ ++..+|||||+|.+.++|.+|++.|||..|.|+.|+|.+.+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 3568999999999999999999999999999886 34568999999999999999999999999999999988765
Q ss_pred C
Q 003036 306 L 306 (854)
Q Consensus 306 p 306 (854)
.
T Consensus 84 s 84 (85)
T 1x4e_A 84 S 84 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 261
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=2.7e-13 Score=124.24 Aligned_cols=81 Identities=7% Similarity=0.086 Sum_probs=72.4
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCceeEeeec----CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET----PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit----~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~ 305 (854)
...++|||+|||.++|+++|+++|++||.|.+|++. +.++|||||+|.+.++|.+|+. ++|..|.|++|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 355799999999999999999999999999998873 5578999999999999999999 99999999999999987
Q ss_pred Cchhhh
Q 003036 306 LRGLRK 311 (854)
Q Consensus 306 pk~~Rr 311 (854)
.-..++
T Consensus 88 ~~~~~k 93 (103)
T 1s79_A 88 DYFAKK 93 (103)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 644433
No 262
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.41 E-value=3.4e-13 Score=124.20 Aligned_cols=80 Identities=19% Similarity=0.287 Sum_probs=70.4
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a 304 (854)
...++|||+|||..+++++|+++|+.||.|.+|++ ++.++|||||+|.+.++|.+|++.+ +..|.|++|+|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 35579999999999999999999999999999887 3556899999999999999999986 59999999999999
Q ss_pred cCchhh
Q 003036 305 HLRGLR 310 (854)
Q Consensus 305 ~pk~~R 310 (854)
.++..+
T Consensus 102 ~~~~~~ 107 (109)
T 2rs2_A 102 FPRRAQ 107 (109)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 887643
No 263
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.41 E-value=5.3e-13 Score=116.87 Aligned_cols=74 Identities=22% Similarity=0.320 Sum_probs=67.1
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a 304 (854)
....+|||+|||+.+++++|+++|++||.|.+|++ ++.++|||||+|.+.++|.+|++ +++..|.|++|+|++|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 35579999999999999999999999999999887 35568999999999999999996 5888999999999885
No 264
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.41 E-value=2.1e-13 Score=116.16 Aligned_cols=70 Identities=14% Similarity=0.274 Sum_probs=65.2
Q ss_pred ceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 003036 234 TLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (854)
Q Consensus 234 tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a 304 (854)
+|||+|||.++++++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++ |||..|.|++|+|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999887 35568999999999999999998 9999999999999885
No 265
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=6.9e-13 Score=122.12 Aligned_cols=78 Identities=18% Similarity=0.270 Sum_probs=70.6
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCceeEeee----cCCcccEEEEEeCCHHHHHHHHHHhCCcee--------CCe
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYI--------AGK 297 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I--------~Gk 297 (854)
....+|||+|||..+++++|+++|+.||.|..|++ ++.++|||||+|.+.++|.+|++.|||..| .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 34579999999999999999999999999999887 345689999999999999999999999999 578
Q ss_pred EEEEEeccCc
Q 003036 298 QIKLEPSHLR 307 (854)
Q Consensus 298 ~IkV~~a~pk 307 (854)
+|+|.|+.++
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999999865
No 266
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=7.5e-13 Score=119.70 Aligned_cols=77 Identities=14% Similarity=0.236 Sum_probs=68.6
Q ss_pred CCCcE-EEEcCCCCCCCHHH----HHHHhhcc-CCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeee
Q 003036 145 HPSRT-LLLRKINSNIEDSE----LKALFEQY-GDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (854)
Q Consensus 145 ~psrt-LfVgNLP~~vTEed----L~elFsqf-G~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~ 218 (854)
.|+.| |||+|||+++++++ |+++|++| |+|.+|. + |+|||.|.+.++|++|++.|+|..+.||+|+|.|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt--g---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT--G---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC--T---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe--c---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 45677 99999999999988 55899999 5999982 3 9999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 003036 219 SIPKDNPS 226 (854)
Q Consensus 219 a~pk~~~~ 226 (854)
+..+.+..
T Consensus 81 A~~~sd~~ 88 (96)
T 2diu_A 81 TPKNRELC 88 (96)
T ss_dssp SCCSCCCC
T ss_pred cCCCccee
Confidence 98876543
No 267
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.40 E-value=4.5e-13 Score=131.97 Aligned_cols=85 Identities=14% Similarity=0.282 Sum_probs=75.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceee
Q 003036 141 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 215 (854)
Q Consensus 141 p~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~ 215 (854)
+....+.++|||+|||+++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..|.|++|.
T Consensus 66 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 66 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 145 (165)
T ss_dssp CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 445567899999999999999999999999999999883 566899999999999999999999999999999999
Q ss_pred eeecCCCCCC
Q 003036 216 IHYSIPKDNP 225 (854)
Q Consensus 216 V~~a~pk~~~ 225 (854)
|.|+.++...
T Consensus 146 V~~a~~~~~~ 155 (165)
T 1rk8_A 146 VDWCFVKGPK 155 (165)
T ss_dssp EEESEECC--
T ss_pred EEEecCCCCC
Confidence 9999876543
No 268
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.40 E-value=1.7e-13 Score=117.05 Aligned_cols=71 Identities=14% Similarity=0.303 Sum_probs=66.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeec
Q 003036 148 RTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (854)
Q Consensus 148 rtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a 219 (854)
++|||+|||+++++++|+++|++||+|..+.. +++++|||||+|.+.++|++|++.++ ..+.|++|+|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 58999999999999999999999999988872 57789999999999999999999999 9999999999886
No 269
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.40 E-value=7.1e-13 Score=131.59 Aligned_cols=81 Identities=17% Similarity=0.224 Sum_probs=72.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-CccccceEEEeeCCHHHHHHHHHHhcceecCC--ceeeeeecC
Q 003036 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-ASKHCGFVTISYYDIRAARNAMKSLQNKLTRS--GKLDIHYSI 220 (854)
Q Consensus 144 e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-tgksKGfAFVeF~d~edA~kAl~~Lng~~L~G--r~L~V~~a~ 220 (854)
.....+|||+||++.+++++|+++|++||+|.+|++ +.+.+|||||+|.+.++|++|++.|+|..|.| ++|+|.|++
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 334567999999999999999999999999999985 34568899999999999999999999999965 999999998
Q ss_pred CCCC
Q 003036 221 PKDN 224 (854)
Q Consensus 221 pk~~ 224 (854)
++..
T Consensus 123 ~~~l 126 (164)
T 1sjr_A 123 LTSL 126 (164)
T ss_dssp SSSC
T ss_pred CCcc
Confidence 8753
No 270
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.40 E-value=5.6e-13 Score=127.86 Aligned_cols=81 Identities=15% Similarity=0.315 Sum_probs=73.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE--------E--EeCccccceEEEeeCCHHHHHHHHHHhcceecCCce
Q 003036 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRT--------F--YRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGK 213 (854)
Q Consensus 144 e~psrtLfVgNLP~~vTEedL~elFsqfG~I~s--------v--~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~ 213 (854)
..++++|||+|||+++++++|+++|++||.|.. + ..+++++|||||+|.+.++|.+|++.|+|..|.|++
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 457899999999999999999999999998754 2 256889999999999999999999999999999999
Q ss_pred eeeeecCCCCC
Q 003036 214 LDIHYSIPKDN 224 (854)
Q Consensus 214 L~V~~a~pk~~ 224 (854)
|.|.|+.+...
T Consensus 122 l~V~~a~~~~~ 132 (143)
T 3egn_A 122 MVVQFARSARP 132 (143)
T ss_dssp CEEEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999977544
No 271
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=4.4e-13 Score=124.19 Aligned_cols=82 Identities=12% Similarity=0.154 Sum_probs=73.5
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCce-eEeee----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEI-KEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I-~~Vri----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~ 305 (854)
...+|||+|||+++++++|+++|+.||.| ..|++ ++.++|||||+|.+.++|.+||+. |+..|.|++|+|.++.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~ 92 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVT 92 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEEC
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECC
Confidence 45799999999999999999999999999 67776 356789999999999999999987 9999999999999999
Q ss_pred CchhhhHh
Q 003036 306 LRGLRKCL 313 (854)
Q Consensus 306 pk~~Rr~l 313 (854)
++..++..
T Consensus 93 ~~~~~~~~ 100 (114)
T 2cpy_A 93 LEDMREIE 100 (114)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88766533
No 272
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.40 E-value=3.2e-13 Score=130.16 Aligned_cols=82 Identities=12% Similarity=0.123 Sum_probs=72.6
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCc---eeEeee----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGE---IKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 303 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~---I~~Vri----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~ 303 (854)
...+|||+|||+++|+++|+++|+.||. |.+|++ .++++|||||+|.+.++|++|++ ||+..|.|+.|+|.+
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~ 121 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFK 121 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEE
Confidence 4468999999999999999999999999 777766 35678999999999999999999 999999999999999
Q ss_pred ccCchhhhHh
Q 003036 304 SHLRGLRKCL 313 (854)
Q Consensus 304 a~pk~~Rr~l 313 (854)
+.+++..+.+
T Consensus 122 a~~~e~~~~~ 131 (136)
T 2hgl_A 122 SHRTEMDWVL 131 (136)
T ss_dssp CCHHHHHHHH
T ss_pred CChHHHHHHH
Confidence 9877655443
No 273
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.40 E-value=2.2e-13 Score=123.14 Aligned_cols=76 Identities=21% Similarity=0.269 Sum_probs=68.7
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeeec------CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET------PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit------~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a 304 (854)
..++|||+|||.++++++|+++|+.|| |.+|++. +.++|||||+|.+.++|.+|+ .|||..|.|++|+|+++
T Consensus 18 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a 95 (100)
T 2j76_E 18 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVA 95 (100)
T ss_dssp --CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEec
Confidence 557999999999999999999999999 9998873 445899999999999999999 89999999999999999
Q ss_pred cCch
Q 003036 305 HLRG 308 (854)
Q Consensus 305 ~pk~ 308 (854)
+++.
T Consensus 96 ~~~~ 99 (100)
T 2j76_E 96 DQAQ 99 (100)
T ss_dssp CCSC
T ss_pred cCCC
Confidence 8753
No 274
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=5.7e-13 Score=118.84 Aligned_cols=78 Identities=15% Similarity=0.152 Sum_probs=70.2
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEee-e-cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCch
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIR-E-TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vr-i-t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~ 308 (854)
...+|||+|||+.+++++|+++|++||.|.+|+ + .....+.|||+|.+.++|.+|++.|||..|.|++|+|+++.+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 93 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDEM 93 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCCC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCccc
Confidence 356899999999999999999999999999995 5 33345569999999999999999999999999999999999874
No 275
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.39 E-value=8.5e-13 Score=125.20 Aligned_cols=75 Identities=25% Similarity=0.385 Sum_probs=68.9
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a 304 (854)
....+|||+|||..+++++|+++|++||.|..|++ ++..+|||||+|.+.++|++|++.|||..|.|++|+|+||
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 35679999999999999999999999999999887 3457899999999999999999999999999999999985
No 276
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.39 E-value=1.3e-13 Score=121.61 Aligned_cols=75 Identities=15% Similarity=0.337 Sum_probs=67.1
Q ss_pred cceeeecCCCCCCHHHHhhhhcccCceeEeeec-----CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCc
Q 003036 233 GTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET-----PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 307 (854)
Q Consensus 233 ~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit-----~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk 307 (854)
++|||+|||..+++++|+++|++||.|.+|++. +.++|||||+|.+.+ |.+|++.|||..+.|++|+|+++.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 479999999999999999999999999998873 556899999999999 99999999999999999999999875
Q ss_pred h
Q 003036 308 G 308 (854)
Q Consensus 308 ~ 308 (854)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 277
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=3.5e-13 Score=122.94 Aligned_cols=79 Identities=16% Similarity=0.132 Sum_probs=71.8
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCc-eeEeeec------CCcccEEEEEeCCHHHHHHHHHHhC--CceeCCeEEEE
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGE-IKEIRET------PQKIHQKYIEFYDTRAAEAALRELN--SRYIAGKQIKL 301 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~-I~~Vrit------~~skG~AFVeF~d~e~A~kAl~~LN--G~~I~Gk~IkV 301 (854)
..++|||+|||..+++++|+++|+.||. |.+|++. +.++|||||+|.+.++|.+|++.|| +..+.|++|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4578999999999999999999999998 9998874 3678999999999999999999996 58999999999
Q ss_pred EeccCchh
Q 003036 302 EPSHLRGL 309 (854)
Q Consensus 302 ~~a~pk~~ 309 (854)
.|++++..
T Consensus 87 ~~a~~~~~ 94 (109)
T 2dis_A 87 DWAEPEID 94 (109)
T ss_dssp EESCSSCS
T ss_pred EEcCCCCC
Confidence 99988654
No 278
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=1.4e-12 Score=116.31 Aligned_cols=80 Identities=13% Similarity=0.213 Sum_probs=69.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCCCC
Q 003036 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDN 224 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk~~ 224 (854)
...++|||+|||+++++++|+++|++||.|..|........||||+|.+.++|++|++ |++..|.|+.|+|.++.++..
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCC
Confidence 4568999999999999999999999999999986432222299999999999999999 999999999999999876654
Q ss_pred C
Q 003036 225 P 225 (854)
Q Consensus 225 ~ 225 (854)
.
T Consensus 85 ~ 85 (94)
T 2e5g_A 85 Q 85 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 279
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.39 E-value=1.5e-13 Score=123.87 Aligned_cols=79 Identities=24% Similarity=0.229 Sum_probs=70.2
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeee----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~p 306 (854)
...+|||+|||..+++++|+++|+.||.|..+.+ ++.++|||||+|.+.++|.+|++ |||..|.|++|+|.++++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~ 94 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKG 94 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCC
Confidence 4569999999999999999999999998876221 46678999999999999999998 999999999999999988
Q ss_pred chhh
Q 003036 307 RGLR 310 (854)
Q Consensus 307 k~~R 310 (854)
+..+
T Consensus 95 ~~~~ 98 (101)
T 1fj7_A 95 RDGT 98 (101)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6543
No 280
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.39 E-value=6.2e-13 Score=124.22 Aligned_cols=77 Identities=12% Similarity=0.262 Sum_probs=71.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecC
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~ 220 (854)
+.++|||+|||.++++++|+++|++||.|..|+. +++++|||||+|.+.++|++|+ .|++..|.|+.|+|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999998873 5778999999999999999999 899999999999999987
Q ss_pred CCC
Q 003036 221 PKD 223 (854)
Q Consensus 221 pk~ 223 (854)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 281
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=4.9e-13 Score=125.55 Aligned_cols=79 Identities=11% Similarity=0.138 Sum_probs=70.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE---EE--eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeee
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRT---FY--RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~s---v~--~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~ 217 (854)
...+.++|||+|||+++++++|+++|++||.|.. +. .+++++|||||+|.+.++|++|++ |++..|.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 3456789999999999999999999999998754 22 467889999999999999999998 99999999999999
Q ss_pred ecCCC
Q 003036 218 YSIPK 222 (854)
Q Consensus 218 ~a~pk 222 (854)
++.++
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98653
No 282
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.39 E-value=6.7e-13 Score=127.09 Aligned_cols=79 Identities=20% Similarity=0.288 Sum_probs=71.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccce-EEEeeCCHHHHHHHHHHhcceecCC--ceeeeeecCCC
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGF-VTISYYDIRAARNAMKSLQNKLTRS--GKLDIHYSIPK 222 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGf-AFVeF~d~edA~kAl~~Lng~~L~G--r~L~V~~a~pk 222 (854)
+--.|||+||++.+|+++|+++|++||+|.+|++..+.+|| |||+|.+.++|++|++.|+|..|.| +.|+|+|++++
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 34567899999999999999999999999999865567888 9999999999999999999999988 89999999876
Q ss_pred CC
Q 003036 223 DN 224 (854)
Q Consensus 223 ~~ 224 (854)
..
T Consensus 107 ~l 108 (130)
T 3zzy_A 107 SL 108 (130)
T ss_dssp SC
T ss_pred ce
Confidence 43
No 283
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=7.4e-13 Score=117.10 Aligned_cols=76 Identities=16% Similarity=0.227 Sum_probs=69.6
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeee----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~p 306 (854)
...+|||+|||..+++++|+++|+.| .|.+|++ ++.++|||||+|.+.++|.+|++ |||..|.|++|+|.++.+
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~ 86 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKS 86 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESS
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCc
Confidence 45689999999999999999999999 8988876 45568999999999999999999 999999999999999987
Q ss_pred ch
Q 003036 307 RG 308 (854)
Q Consensus 307 k~ 308 (854)
+.
T Consensus 87 ~~ 88 (91)
T 2dgw_A 87 GP 88 (91)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 284
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.39 E-value=1.8e-13 Score=129.76 Aligned_cols=78 Identities=21% Similarity=0.255 Sum_probs=71.0
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCceeE--eee-----cCCcccEEEEEeCCHHHHHHHHHHhCCc----eeCCeE
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKE--IRE-----TPQKIHQKYIEFYDTRAAEAALRELNSR----YIAGKQ 298 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~~--Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~----~I~Gk~ 298 (854)
...++|||+|||+.+++++|+++|++||.|.. |++ ++.++|||||+|.+. +|.+|++.|||. .|.|++
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 35579999999999999999999999999966 666 566789999999999 999999999999 999999
Q ss_pred EEEEeccCch
Q 003036 299 IKLEPSHLRG 308 (854)
Q Consensus 299 IkV~~a~pk~ 308 (854)
|+|++++++.
T Consensus 100 l~V~~a~~~~ 109 (131)
T 2m2b_A 100 INVEFAKGSK 109 (131)
T ss_dssp CCCEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999998754
No 285
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=3.3e-13 Score=125.05 Aligned_cols=79 Identities=10% Similarity=0.070 Sum_probs=70.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCe-EEEE----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeee
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDV-RTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I-~sv~----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~ 217 (854)
...+.++|||+|||+++++++|+++|++||.| ..|+ .+++++|||||+|.+.++|++|++. ++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 34567999999999999999999999999999 5555 3577899999999999999999976 9999999999999
Q ss_pred ecCCC
Q 003036 218 YSIPK 222 (854)
Q Consensus 218 ~a~pk 222 (854)
++.++
T Consensus 90 ~a~~~ 94 (114)
T 2cpy_A 90 VVTLE 94 (114)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98754
No 286
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.38 E-value=2.3e-13 Score=118.10 Aligned_cols=69 Identities=16% Similarity=0.257 Sum_probs=63.8
Q ss_pred cceeeecCCCCC------CHHHHhhhhcccCceeEeee---cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe-EEEE
Q 003036 233 GTLVVFNLDSSV------SNDELHHIFGVYGEIKEIRE---TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGK-QIKL 301 (854)
Q Consensus 233 ~tLfV~NLp~sv------TeedLreiFs~fG~I~~Vri---t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk-~IkV 301 (854)
++|||+|||..+ ++++|+++|++||.|.+|++ ++.++|||||+|.+.++|.+|++.|||..|.|+ +|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 589999999999 67999999999999999887 446789999999999999999999999999999 8876
No 287
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.38 E-value=7.8e-13 Score=117.65 Aligned_cols=78 Identities=21% Similarity=0.388 Sum_probs=63.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhccee--cCCceeeeeecC
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKL--TRSGKLDIHYSI 220 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~--L~Gr~L~V~~a~ 220 (854)
...+..+|||+|||+++++++|+++|++||+|.+|+....+||||||+|.+.++|++ +++.. +.|++|.|.++.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 456789999999999999999999999999999999766799999999999999984 34544 569999999998
Q ss_pred CCCC
Q 003036 221 PKDN 224 (854)
Q Consensus 221 pk~~ 224 (854)
++..
T Consensus 83 ~k~~ 86 (89)
T 3d2w_A 83 PKHN 86 (89)
T ss_dssp ----
T ss_pred CCCc
Confidence 7653
No 288
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.38 E-value=7.9e-13 Score=123.53 Aligned_cols=82 Identities=12% Similarity=0.145 Sum_probs=72.3
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCc---eeEeee----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGE---IKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 303 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~---I~~Vri----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~ 303 (854)
...+|||+|||+++++++|+++|+.||. |..|++ .+.++|||||+|.+.++|++||+ ||+..|.|+.|+|.+
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 94 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFK 94 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEE
Confidence 4568999999999999999999999999 777776 35568999999999999999999 999999999999999
Q ss_pred ccCchhhhHh
Q 003036 304 SHLRGLRKCL 313 (854)
Q Consensus 304 a~pk~~Rr~l 313 (854)
+.+++..+.+
T Consensus 95 a~~~~~~~~~ 104 (118)
T 2db1_A 95 SHRTEMDWVL 104 (118)
T ss_dssp ECHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9876644433
No 289
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.9e-12 Score=117.11 Aligned_cols=77 Identities=14% Similarity=0.291 Sum_probs=69.8
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a 304 (854)
....+|||+|||..+++++|+++|+.||.|..|++ ++.++|||||+|.+.++|.+|++ ++..|.|++|+|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence 34579999999999999999999999999999877 35668999999999999999998 578999999999999
Q ss_pred cCch
Q 003036 305 HLRG 308 (854)
Q Consensus 305 ~pk~ 308 (854)
.++.
T Consensus 91 ~~~~ 94 (103)
T 2cqg_A 91 NSKQ 94 (103)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 8865
No 290
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.37 E-value=9.3e-13 Score=125.14 Aligned_cols=74 Identities=20% Similarity=0.154 Sum_probs=67.8
Q ss_pred ceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccE-EEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEeccCch
Q 003036 234 TLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQ-KYIEFYDTRAAEAALRELNSRYIAG--KQIKLEPSHLRG 308 (854)
Q Consensus 234 tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~-AFVeF~d~e~A~kAl~~LNG~~I~G--k~IkV~~a~pk~ 308 (854)
.|||+||++.+++++|+++|++||.|++|++..+ .|+ |||+|.+.++|.+|++.|||..|.| ++|+|.|++++.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 5789999999999999999999999999988443 585 9999999999999999999999988 699999999864
No 291
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.37 E-value=4.6e-13 Score=125.14 Aligned_cols=78 Identities=10% Similarity=0.078 Sum_probs=69.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCC---eEEEE----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeee
Q 003036 144 EHPSRTLLLRKINSNIEDSELKALFEQYGD---VRTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (854)
Q Consensus 144 e~psrtLfVgNLP~~vTEedL~elFsqfG~---I~sv~----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V 216 (854)
....++|||+|||+++++++|+++|++||. |..|+ ..++++|||||+|.+.++|++|++ +++..|.|+.|+|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 345789999999999999999999999998 66665 247789999999999999999998 9999999999999
Q ss_pred eecCCC
Q 003036 217 HYSIPK 222 (854)
Q Consensus 217 ~~a~pk 222 (854)
.++.++
T Consensus 93 ~~a~~~ 98 (118)
T 2db1_A 93 FKSHRT 98 (118)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 987543
No 292
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=3.6e-13 Score=114.98 Aligned_cols=71 Identities=20% Similarity=0.326 Sum_probs=66.0
Q ss_pred cceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 003036 233 GTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (854)
Q Consensus 233 ~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a 304 (854)
++|||+|||..+++++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|++.++ ..+.|++|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 37999999999999999999999999999877 34568999999999999999999999 9999999999987
No 293
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=4.2e-13 Score=125.98 Aligned_cols=80 Identities=15% Similarity=0.244 Sum_probs=71.4
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEe-ee----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEI-RE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~V-ri----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~ 305 (854)
...+|||+|||+.+++++|+++|+.||.|..+ .+ ++.++|||||+|.+.++|.+||+ |||..|.|++|+|.++.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 44699999999999999999999999998762 22 56678999999999999999999 99999999999999999
Q ss_pred Cchhhh
Q 003036 306 LRGLRK 311 (854)
Q Consensus 306 pk~~Rr 311 (854)
+++..+
T Consensus 103 ~~~~~~ 108 (124)
T 1wel_A 103 KKGMLE 108 (124)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877544
No 294
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.37 E-value=1.1e-12 Score=114.49 Aligned_cols=72 Identities=17% Similarity=0.300 Sum_probs=67.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcc----C-------CeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCce
Q 003036 145 HPSRTLLLRKINSNIEDSELKALFEQY----G-------DVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGK 213 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~elFsqf----G-------~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~ 213 (854)
.+.++|||+|||+++++++|+++|++| | .|..++. .+.+|||||+|.+.++|++|+ .|++..+.|++
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~-~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~ 81 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 81 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE-CSSSSEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEe-cCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeE
Confidence 467999999999999999999999999 8 9999986 456999999999999999999 99999999999
Q ss_pred eeeee
Q 003036 214 LDIHY 218 (854)
Q Consensus 214 L~V~~ 218 (854)
|+|+.
T Consensus 82 l~V~r 86 (87)
T 2hzc_A 82 LKIRR 86 (87)
T ss_dssp CEEEC
T ss_pred EEEeC
Confidence 99864
No 295
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.06 E-value=5.2e-14 Score=130.41 Aligned_cols=83 Identities=18% Similarity=0.320 Sum_probs=75.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE--------EE-----eCccccceEEEeeCCHHHHHHHHHHhcceec
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRT--------FY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLT 209 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~s--------v~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L 209 (854)
...+.++|||+|||+++++++|+++|++||.|.. |+ .+++++|||||+|.+.++|++|++.|++..|
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 3467899999999999999999999999999987 54 3467899999999999999999999999999
Q ss_pred CCceeeeeecCCCCCC
Q 003036 210 RSGKLDIHYSIPKDNP 225 (854)
Q Consensus 210 ~Gr~L~V~~a~pk~~~ 225 (854)
.|++|+|.++.++...
T Consensus 83 ~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 83 SGNPIKVSFATRRADF 98 (116)
Confidence 9999999999887554
No 296
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.36 E-value=2.3e-12 Score=122.38 Aligned_cols=79 Identities=16% Similarity=0.206 Sum_probs=69.2
Q ss_pred CCCcE--EEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccce-EEEeeCCHHHHHHHHHHhcceecCC--ceeeeeec
Q 003036 145 HPSRT--LLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGF-VTISYYDIRAARNAMKSLQNKLTRS--GKLDIHYS 219 (854)
Q Consensus 145 ~psrt--LfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGf-AFVeF~d~edA~kAl~~Lng~~L~G--r~L~V~~a 219 (854)
.|+++ |||+||++.+++++|+++|++||.|..|++..+ .|| |||+|.+.++|++|++.|+|..|.| ++|+|.|+
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 34554 679999999999999999999999999985333 496 9999999999999999999999987 69999999
Q ss_pred CCCCC
Q 003036 220 IPKDN 224 (854)
Q Consensus 220 ~pk~~ 224 (854)
.++..
T Consensus 100 k~~~l 104 (124)
T 2e5i_A 100 RPTRL 104 (124)
T ss_dssp SCSCC
T ss_pred cCCcc
Confidence 88753
No 297
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.3e-12 Score=119.10 Aligned_cols=77 Identities=18% Similarity=0.264 Sum_probs=70.0
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeE-eee----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKE-IRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~-Vri----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~ 305 (854)
...+|||+|||+.+++++|+++|+.||.|.+ |++ ++.++|||||+|.+.++|++|++. |+..|.|+.|+|.++.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~ 92 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSS 92 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECC
Confidence 4569999999999999999999999999987 766 566789999999999999999997 9999999999999987
Q ss_pred Cch
Q 003036 306 LRG 308 (854)
Q Consensus 306 pk~ 308 (854)
+++
T Consensus 93 ~~~ 95 (104)
T 1wg5_A 93 RAE 95 (104)
T ss_dssp TTT
T ss_pred HHH
Confidence 654
No 298
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=9.5e-13 Score=120.11 Aligned_cols=78 Identities=8% Similarity=0.152 Sum_probs=69.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeec
Q 003036 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (854)
Q Consensus 144 e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a 219 (854)
..+.++|||+|||+++++++|+++|++||.| .|+ .+++++|||||+|.+.++|++|+ .+++..|.+|.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEEC
Confidence 4566899999999999999999999999965 665 36788999999999999999999 57999999999999988
Q ss_pred CCCC
Q 003036 220 IPKD 223 (854)
Q Consensus 220 ~pk~ 223 (854)
.+..
T Consensus 90 ~~~~ 93 (102)
T 1wez_A 90 STAG 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 299
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.36 E-value=2.5e-13 Score=122.63 Aligned_cols=82 Identities=18% Similarity=0.355 Sum_probs=72.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeee
Q 003036 142 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (854)
Q Consensus 142 ~~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~ 217 (854)
..+.+.++|||+|||+++++++|+++|++||.|..|+. +++++|||||+|.+.++|++|++ ++..+.|+.|.|.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~ 81 (102)
T 2xs2_A 4 EGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLG 81 (102)
T ss_dssp CCEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEE
Confidence 34456799999999999999999999999999999883 56789999999999999999997 8999999999999
Q ss_pred ecCCCCCC
Q 003036 218 YSIPKDNP 225 (854)
Q Consensus 218 ~a~pk~~~ 225 (854)
++.++...
T Consensus 82 ~a~~~~~~ 89 (102)
T 2xs2_A 82 PAIRKQNL 89 (102)
T ss_dssp EEEECC--
T ss_pred ECCcCcch
Confidence 98876543
No 300
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.36 E-value=7.2e-13 Score=127.12 Aligned_cols=80 Identities=25% Similarity=0.333 Sum_probs=71.4
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEe--------e--ecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEI--------R--ETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIK 300 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~V--------r--it~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~Ik 300 (854)
...+|||+|||+.+++++|+++|+.||.|..+ + .++..+|||||+|.+.++|.+|++.|||..|.|++|+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 123 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 123 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 45789999999999999999999999998653 2 2678899999999999999999999999999999999
Q ss_pred EEeccCchhh
Q 003036 301 LEPSHLRGLR 310 (854)
Q Consensus 301 V~~a~pk~~R 310 (854)
|.|+++...+
T Consensus 124 V~~a~~~~~~ 133 (143)
T 3egn_A 124 VQFARSARPK 133 (143)
T ss_dssp EEECCCSCC-
T ss_pred EEECCCCCCc
Confidence 9999875543
No 301
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.36 E-value=1.8e-12 Score=115.31 Aligned_cols=76 Identities=17% Similarity=0.285 Sum_probs=63.9
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCce--eCCeEEEEEeccCc
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRY--IAGKQIKLEPSHLR 307 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~--I~Gk~IkV~~a~pk 307 (854)
....+|||+|||+++++++|+++|++||.|.+|++..++||||||+|.+.++|++ |++.. +.|++|.|.++.++
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEPK 84 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCCC
Confidence 3457999999999999999999999999999999977789999999999999983 56665 45999999999987
Q ss_pred hh
Q 003036 308 GL 309 (854)
Q Consensus 308 ~~ 309 (854)
..
T Consensus 85 ~~ 86 (89)
T 3d2w_A 85 HN 86 (89)
T ss_dssp --
T ss_pred Cc
Confidence 64
No 302
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.36 E-value=1.5e-12 Score=133.27 Aligned_cols=76 Identities=24% Similarity=0.476 Sum_probs=71.6
Q ss_pred cccceeeecCC-CCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 003036 231 NQGTLVVFNLD-SSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (854)
Q Consensus 231 ~~~tLfV~NLp-~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~p 306 (854)
...+|||+||| ..+++++|+++|++||.|.+|++...++|||||+|.+.++|++|++.|||..+.|++|+|.+++.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 34689999999 89999999999999999999999777899999999999999999999999999999999999864
No 303
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=8.1e-13 Score=123.80 Aligned_cols=75 Identities=17% Similarity=0.208 Sum_probs=68.8
Q ss_pred cccceee--ecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCcee-----CCeEEEEEe
Q 003036 231 NQGTLVV--FNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYI-----AGKQIKLEP 303 (854)
Q Consensus 231 ~~~tLfV--~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I-----~Gk~IkV~~ 303 (854)
+..+||| +||+..+++++|+++|++||+|.+|.+. ..||||||+|.+.++|++|++.|||.+| .|++|.|.|
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~-~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~ 102 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP-PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNF 102 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECC-TTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEe
Confidence 4568999 6699999999999999999999999884 4689999999999999999999999998 689999999
Q ss_pred ccC
Q 003036 304 SHL 306 (854)
Q Consensus 304 a~p 306 (854)
++.
T Consensus 103 a~~ 105 (114)
T 2cq2_A 103 VEK 105 (114)
T ss_dssp ESC
T ss_pred ccc
Confidence 875
No 304
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=8.7e-13 Score=116.07 Aligned_cols=79 Identities=20% Similarity=0.394 Sum_probs=68.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCCCC
Q 003036 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDN 224 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk~~ 224 (854)
.++++|||+|||+++++++|+++|++||.|..|+....++|||||+|.+.++|++|+.. ...+.|++|+|.++.++..
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCCC
Confidence 45799999999999999999999999999999997666899999999999999865422 3456899999999988765
Q ss_pred C
Q 003036 225 P 225 (854)
Q Consensus 225 ~ 225 (854)
.
T Consensus 81 ~ 81 (88)
T 1wf0_A 81 S 81 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 305
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.35 E-value=5.6e-13 Score=113.37 Aligned_cols=70 Identities=14% Similarity=0.355 Sum_probs=64.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeec
Q 003036 149 TLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (854)
Q Consensus 149 tLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a 219 (854)
+|||+|||+++++++|+++|++||+|..+.. +++++|||||+|.+.++|++|++ +++..+.|++|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 6999999999999999999999999999872 46789999999999999999997 4889999999999874
No 306
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.35 E-value=7.2e-13 Score=121.38 Aligned_cols=82 Identities=11% Similarity=0.108 Sum_probs=73.0
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCc---eeEeee----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGE---IKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 303 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~---I~~Vri----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~ 303 (854)
...+|||+|||+++++++|+++|+.||. |..|++ .+.++|||||+|.+.++|.+|++ ||+..|+|+.|+|.+
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYE 88 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEE
Confidence 4568999999999999999999999998 788777 34578999999999999999999 999999999999999
Q ss_pred ccCchhhhHh
Q 003036 304 SHLRGLRKCL 313 (854)
Q Consensus 304 a~pk~~Rr~l 313 (854)
+.+++.++.+
T Consensus 89 a~~~~~~~~~ 98 (107)
T 2lmi_A 89 INNEDVDALM 98 (107)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9887755544
No 307
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.34 E-value=1.8e-12 Score=126.72 Aligned_cols=80 Identities=24% Similarity=0.338 Sum_probs=74.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCC
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk 222 (854)
...+.++|||+|||.++++++|+++|++||.|..+..+++++|||||+|.+.++|.+|++.|+|..|.|++|+|.|+.++
T Consensus 95 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 95 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 34567999999999999999999999999999998667889999999999999999999999999999999999999876
No 308
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.34 E-value=1.3e-12 Score=121.36 Aligned_cols=74 Identities=18% Similarity=0.199 Sum_probs=65.2
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeE-----EEEEecc
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQ-----IKLEPSH 305 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~-----IkV~~a~ 305 (854)
...+|||+|||.++++++|+++|++||+|..|++... +||||+|.+.++|++||+.|||..|.|++ |+|..+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence 3468999999999999999999999999999998544 99999999999999999999999999998 5666555
Q ss_pred C
Q 003036 306 L 306 (854)
Q Consensus 306 p 306 (854)
+
T Consensus 93 ~ 93 (115)
T 3beg_B 93 P 93 (115)
T ss_dssp -
T ss_pred C
Confidence 4
No 309
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.33 E-value=1.6e-12 Score=120.77 Aligned_cols=76 Identities=16% Similarity=0.192 Sum_probs=65.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCce-----eeeeec
Q 003036 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGK-----LDIHYS 219 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~-----L~V~~a 219 (854)
...++|||+|||+++++++|+++|++||+|..|.+... |||||+|.+.++|++|++.|+++.|.|++ |+|..+
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~ 91 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 91 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccC
Confidence 45689999999999999999999999999999986333 99999999999999999999999999998 666655
Q ss_pred CCC
Q 003036 220 IPK 222 (854)
Q Consensus 220 ~pk 222 (854)
.++
T Consensus 92 ~~~ 94 (115)
T 3beg_B 92 GPR 94 (115)
T ss_dssp C--
T ss_pred CCC
Confidence 544
No 310
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.33 E-value=9.3e-13 Score=137.19 Aligned_cols=80 Identities=18% Similarity=0.181 Sum_probs=73.2
Q ss_pred ccceeeecCCCCCCHHHHhhhhcccC--ceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 003036 232 QGTLVVFNLDSSVSNDELHHIFGVYG--EIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (854)
Q Consensus 232 ~~tLfV~NLp~svTeedLreiFs~fG--~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a 304 (854)
..+|||+||++.+++++|+++|++|| .|++|++ ++.++|||||+|.+.++|++||+.|||..|.|++|+|.++
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a 147 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPV 147 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEEC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEEC
Confidence 45899999999999999999999999 9999887 5667899999999999999999999999999999999999
Q ss_pred cCchhhh
Q 003036 305 HLRGLRK 311 (854)
Q Consensus 305 ~pk~~Rr 311 (854)
++....+
T Consensus 148 ~~~~~~~ 154 (229)
T 3q2s_C 148 NKQFLSQ 154 (229)
T ss_dssp CHHHHHH
T ss_pred CCCccch
Confidence 8876543
No 311
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.33 E-value=1e-12 Score=126.62 Aligned_cols=78 Identities=9% Similarity=0.071 Sum_probs=69.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCC---eEEEE----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceee
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGD---VRTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 215 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~---I~sv~----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~ 215 (854)
.....++|||+|||+++|+++|+++|++||. |..|+ ..++++|||||+|.+.++|++|++ +++..|.||.|+
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 3456789999999999999999999999998 65555 247889999999999999999998 999999999999
Q ss_pred eeecCC
Q 003036 216 IHYSIP 221 (854)
Q Consensus 216 V~~a~p 221 (854)
|.++.+
T Consensus 119 V~~a~~ 124 (136)
T 2hgl_A 119 VFKSHR 124 (136)
T ss_dssp EEECCH
T ss_pred EEECCh
Confidence 988754
No 312
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.33 E-value=2.1e-12 Score=129.47 Aligned_cols=80 Identities=16% Similarity=0.326 Sum_probs=73.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeee
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~ 218 (854)
...++++|||+|||+++++++|+++|++||+|..|.+ +++++|||||+|.+.++|++|++.|++..|.|++|+|.|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456789999999999999999999999999999884 367899999999999999999999999999999999999
Q ss_pred cCCC
Q 003036 219 SIPK 222 (854)
Q Consensus 219 a~pk 222 (854)
+.+.
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 8754
No 313
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.7e-12 Score=115.66 Aligned_cols=77 Identities=18% Similarity=0.297 Sum_probs=67.1
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCch
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~ 308 (854)
...+|||+|||..+++++|+++|+.||.|.+|........||||+|.+.++|.+|++ |||..|.|++|+|.++.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 346899999999999999999999999999984432222299999999999999999 99999999999999886543
No 314
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.33 E-value=3.9e-12 Score=122.22 Aligned_cols=79 Identities=20% Similarity=0.322 Sum_probs=72.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeee
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~ 217 (854)
...+.++|||+|||.++++++|+++|++||.|..+.. +++++|||||+|.+.++|.+|++.|+|..+.|++|+|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 4567889999999999999999999999999999873 46789999999999999999999999999999999999
Q ss_pred ecCC
Q 003036 218 YSIP 221 (854)
Q Consensus 218 ~a~p 221 (854)
|+.+
T Consensus 163 ~a~~ 166 (166)
T 3md3_A 163 WAAK 166 (166)
T ss_dssp ESCC
T ss_pred ecCC
Confidence 9853
No 315
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.00 E-value=1.3e-13 Score=127.81 Aligned_cols=80 Identities=24% Similarity=0.286 Sum_probs=72.2
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeE--------eee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKE--------IRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGK 297 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~--------Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk 297 (854)
...+|||+|||..+++++|+++|++||.|.. |++ ++.++|||||+|.+.++|.+|++.|||..|.|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 4579999999999999999999999999988 665 345689999999999999999999999999999
Q ss_pred EEEEEeccCchhh
Q 003036 298 QIKLEPSHLRGLR 310 (854)
Q Consensus 298 ~IkV~~a~pk~~R 310 (854)
+|+|++++++..+
T Consensus 86 ~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 86 PIKVSFATRRADF 98 (116)
Confidence 9999999886543
No 316
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.32 E-value=2.9e-12 Score=120.58 Aligned_cols=79 Identities=14% Similarity=0.235 Sum_probs=72.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCC
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk 222 (854)
...+.++|||+|+ ++++++|+++|++||+|..|.. .+++|||||+|.+.++|++|++.|++..+.|++|+|.|+.++
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i-~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEE-eCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 3457899999996 6999999999999999999987 588999999999999999999999999999999999999876
Q ss_pred CC
Q 003036 223 DN 224 (854)
Q Consensus 223 ~~ 224 (854)
..
T Consensus 112 ~~ 113 (121)
T 2bz2_A 112 PM 113 (121)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 317
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.32 E-value=1.1e-12 Score=136.49 Aligned_cols=76 Identities=12% Similarity=0.119 Sum_probs=70.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccC--CeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeee
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQYG--DVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsqfG--~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~ 218 (854)
..++|||+|||+++++++|+++|++|| +|..|++ ++++||||||+|.+.++|++||+.|+++.|.|++|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 9999882 678999999999999999999999999999999999999
Q ss_pred cCC
Q 003036 219 SIP 221 (854)
Q Consensus 219 a~p 221 (854)
+.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 318
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=2.2e-12 Score=116.69 Aligned_cols=70 Identities=19% Similarity=0.297 Sum_probs=63.9
Q ss_pred ceeeecCCCCCCHHH----Hhhhhccc-CceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCch
Q 003036 234 TLVVFNLDSSVSNDE----LHHIFGVY-GEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 234 tLfV~NLp~svTeed----LreiFs~f-G~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~ 308 (854)
.|||.|||..+++++ |+++|++| |+|.+|. + |+|||+|.+.++|.+|++.|||..+.||+|+|.|++.+.
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt--g---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~s 85 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT--G---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNR 85 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC--T---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSC
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe--c---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCc
Confidence 499999999999988 55899999 5999982 3 999999999999999999999999999999999998753
No 319
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=1.4e-12 Score=118.94 Aligned_cols=76 Identities=12% Similarity=0.169 Sum_probs=67.3
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeee----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~p 306 (854)
...+|||+|||+++++++|+++|++||.| +|++ +++++|||||+|.+.++|++||+ +|+..|.|+.|+|.++.+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~~ 91 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNST 91 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCC
Confidence 44689999999999999999999999954 7666 45678999999999999999995 799999999999999876
Q ss_pred ch
Q 003036 307 RG 308 (854)
Q Consensus 307 k~ 308 (854)
.+
T Consensus 92 ~~ 93 (102)
T 1wez_A 92 AG 93 (102)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 320
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.31 E-value=9.8e-13 Score=120.48 Aligned_cols=78 Identities=8% Similarity=-0.002 Sum_probs=69.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCC---eEEEE----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeee
Q 003036 144 EHPSRTLLLRKINSNIEDSELKALFEQYGD---VRTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (854)
Q Consensus 144 e~psrtLfVgNLP~~vTEedL~elFsqfG~---I~sv~----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V 216 (854)
....++|||+|||+++++++|+++|++||. |..|+ ..++++|||||+|.+.++|++|++ +++..+.|+.|+|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 346789999999999999999999999998 77776 237789999999999999999998 9999999999999
Q ss_pred eecCCC
Q 003036 217 HYSIPK 222 (854)
Q Consensus 217 ~~a~pk 222 (854)
.++.++
T Consensus 87 ~~a~~~ 92 (107)
T 2lmi_A 87 YEINNE 92 (107)
T ss_dssp EECCHH
T ss_pred EECCHH
Confidence 987653
No 321
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=4.4e-12 Score=117.57 Aligned_cols=75 Identities=12% Similarity=0.209 Sum_probs=67.9
Q ss_pred ccceeeecCCCCCCHHHHhhhhcccCceeEeee----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCc
Q 003036 232 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 307 (854)
Q Consensus 232 ~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk 307 (854)
..+|||+|||+++++++|+++|+.| .|.+|++ .++++|||||+|.+.++|++|| .||+..|.|+.|+|..+.++
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence 4589999999999999999999999 8888877 3557899999999999999999 69999999999999988764
Q ss_pred h
Q 003036 308 G 308 (854)
Q Consensus 308 ~ 308 (854)
+
T Consensus 94 ~ 94 (109)
T 2dnn_A 94 Q 94 (109)
T ss_dssp H
T ss_pred c
Confidence 3
No 322
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.31 E-value=8.4e-13 Score=112.25 Aligned_cols=70 Identities=14% Similarity=0.323 Sum_probs=64.5
Q ss_pred ceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 003036 234 TLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (854)
Q Consensus 234 tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a 304 (854)
+|||+|||..+++++|+++|++||.|.+|++ ++.++|||||+|.+.++|.+|++. ++..+.|++|+|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 5899999999999999999999999999887 255689999999999999999985 899999999999875
No 323
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=1.6e-12 Score=120.49 Aligned_cols=75 Identities=7% Similarity=0.103 Sum_probs=67.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecC
Q 003036 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~ 220 (854)
...++|||+|||+++++++|+++|++| .|..|++ .++++|||||+|.+.++|++|+ .+++..|.||.|.|..+.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 345899999999999999999999999 8888873 4778999999999999999999 799999999999997765
Q ss_pred C
Q 003036 221 P 221 (854)
Q Consensus 221 p 221 (854)
+
T Consensus 92 ~ 92 (109)
T 2dnn_A 92 E 92 (109)
T ss_dssp H
T ss_pred c
Confidence 3
No 324
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.31 E-value=6.2e-13 Score=128.61 Aligned_cols=121 Identities=10% Similarity=0.043 Sum_probs=69.0
Q ss_pred cceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCCCCCCcccccccceeeecCCCCCCHHHHhhhhcccCceeEee
Q 003036 184 CGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIR 263 (854)
Q Consensus 184 KGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vr 263 (854)
+|+||.+|.-++.+..++..+... ..|....-..... ..........+|||+|||+++++++|+++|++|| |++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g~~--~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~ 76 (139)
T 2hgn_A 1 MGSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSGDS--EFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVH 76 (139)
T ss_dssp -----------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEE
T ss_pred CCcccccccCccccchhcccchhc-cCCCCCCCCCCCc--ccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEE
Confidence 367888888877777776654432 2222221111110 1111223456999999999999999999999999 66877
Q ss_pred e----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCchh
Q 003036 264 E----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGL 309 (854)
Q Consensus 264 i----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~~ 309 (854)
+ .++++|||||+|.+.++|++|| .+|+..|.|+.|+|.++.+++.
T Consensus 77 i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 77 IEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp CCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred EEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 6 3457899999999999999999 7999999999999999887653
No 325
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.31 E-value=5e-12 Score=121.62 Aligned_cols=77 Identities=26% Similarity=0.440 Sum_probs=71.2
Q ss_pred ccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 003036 232 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (854)
Q Consensus 232 ~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~p 306 (854)
.++|||+|||+.+++++|+++|+.||.|.+|++ ++.++|||||+|.+.++|.+|++.|||..+.|++|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 468999999999999999999999999999877 455679999999999999999999999999999999999986
Q ss_pred ch
Q 003036 307 RG 308 (854)
Q Consensus 307 k~ 308 (854)
+.
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 326
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.30 E-value=4.3e-12 Score=110.72 Aligned_cols=71 Identities=15% Similarity=0.329 Sum_probs=65.9
Q ss_pred cccceeeecCCCCCCHHHHhhhhccc----C-------ceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVY----G-------EIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQI 299 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~f----G-------~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~I 299 (854)
..++|||+|||..+++++|+++|++| | .|.++++ ...+|||||+|.+.++|.+|+ .|||..+.|++|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~-~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l 82 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 82 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE-CSSSSEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEe-cCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEE
Confidence 45799999999999999999999999 8 8999988 445899999999999999999 999999999999
Q ss_pred EEEe
Q 003036 300 KLEP 303 (854)
Q Consensus 300 kV~~ 303 (854)
+|+.
T Consensus 83 ~V~r 86 (87)
T 2hzc_A 83 KIRR 86 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9974
No 327
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.30 E-value=4.8e-12 Score=122.30 Aligned_cols=77 Identities=22% Similarity=0.342 Sum_probs=70.9
Q ss_pred ccceeeecCCCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 003036 232 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (854)
Q Consensus 232 ~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~p 306 (854)
.++|||+|||.++++++|+++|+.||.|.+|++ ++.++|||||+|.+.++|.+|++.|+|..+.|++|+|.|+.+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 468999999999999999999999999999887 344679999999999999999999999999999999999976
Q ss_pred ch
Q 003036 307 RG 308 (854)
Q Consensus 307 k~ 308 (854)
+.
T Consensus 83 ~~ 84 (168)
T 1b7f_A 83 GG 84 (168)
T ss_dssp CS
T ss_pred Cc
Confidence 54
No 328
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.30 E-value=9.8e-12 Score=126.13 Aligned_cols=115 Identities=10% Similarity=0.092 Sum_probs=89.1
Q ss_pred CHHHHHHHHHHh--cceecCCceeeeeecCCCCCCCc-----ccccccceeeecCCCCCCHHHHhhhhcccCceeEeee-
Q 003036 193 DIRAARNAMKSL--QNKLTRSGKLDIHYSIPKDNPSE-----KEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE- 264 (854)
Q Consensus 193 d~edA~kAl~~L--ng~~L~Gr~L~V~~a~pk~~~~~-----~~~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri- 264 (854)
+.+.+..|++.. ....+.+....|.....+..+.. .....++|||+|||..+++++|+++|++||.|..|++
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 667888888777 55566666566655422221111 2235579999999999999999999999999999887
Q ss_pred ---cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCch
Q 003036 265 ---TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 265 ---t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~ 308 (854)
++..+|||||+|.+.++|.+|++.++ ..+.|++|+|.++..-.
T Consensus 143 ~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~y~ 188 (193)
T 2voo_A 143 RTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDDYF 188 (193)
T ss_dssp ECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTTC-
T ss_pred ECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHHHH
Confidence 35578999999999999999998665 59999999999976543
No 329
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.30 E-value=5.2e-12 Score=127.22 Aligned_cols=81 Identities=17% Similarity=0.365 Sum_probs=74.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeec
Q 003036 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a 219 (854)
.+.++|||+|||.++++++|+++|++||.|..++. +++++|||||+|.+.++|.+|++.|++..|.|+.|.|.|+
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45689999999999999999999999999999883 5677999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 003036 220 IPKDNP 225 (854)
Q Consensus 220 ~pk~~~ 225 (854)
.++...
T Consensus 203 ~~~~~~ 208 (216)
T 2qfj_A 203 VTPPMP 208 (216)
T ss_dssp SSCSST
T ss_pred cCCCCC
Confidence 887543
No 330
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.30 E-value=4.1e-12 Score=129.65 Aligned_cols=78 Identities=13% Similarity=0.284 Sum_probs=72.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE---eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCCC
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFY---RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~---~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~pk 222 (854)
..++|||+|||+++++++|+++|++||.|..++ ..+.++|||||+|.+.++|++|++.|||..|.|++|.|.++.++
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 467999999999999999999999999999987 34567999999999999999999999999999999999999876
Q ss_pred C
Q 003036 223 D 223 (854)
Q Consensus 223 ~ 223 (854)
.
T Consensus 182 ~ 182 (213)
T 4f02_A 182 K 182 (213)
T ss_dssp H
T ss_pred c
Confidence 4
No 331
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.29 E-value=2.9e-12 Score=120.59 Aligned_cols=78 Identities=18% Similarity=0.315 Sum_probs=70.6
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCchhh
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGLR 310 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~~R 310 (854)
...+|||+|+ ++++++|+++|++||.|.+|++ ...+|||||+|.+.++|.+|++.|||..|.|++|+|.|++++..+
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i-~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~~ 114 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPML 114 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC-
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEE-eCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCCC
Confidence 4569999996 6999999999999999999998 478999999999999999999999999999999999999987644
Q ss_pred h
Q 003036 311 K 311 (854)
Q Consensus 311 r 311 (854)
+
T Consensus 115 ~ 115 (121)
T 2bz2_A 115 D 115 (121)
T ss_dssp -
T ss_pred C
Confidence 3
No 332
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=1.3e-12 Score=114.95 Aligned_cols=76 Identities=17% Similarity=0.300 Sum_probs=65.7
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCch
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~ 308 (854)
..++|||+|||.++++++|+++|++||.|.+|++...++|||||+|.+.++|++|+.. ...+.|++|+|.++.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKH 79 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCC
Confidence 3478999999999999999999999999999999777899999999999999754221 234589999999998865
No 333
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.29 E-value=1.7e-12 Score=125.56 Aligned_cols=80 Identities=9% Similarity=0.143 Sum_probs=69.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeee
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~ 218 (854)
.....++|||+|||+++++++|+++|++|| |..|+ ..++++|||||+|.+.++|++|+ .+++..|.|+.|.|..
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 345678999999999999999999999999 55777 24778999999999999999999 8999999999999999
Q ss_pred cCCCCC
Q 003036 219 SIPKDN 224 (854)
Q Consensus 219 a~pk~~ 224 (854)
+.++..
T Consensus 120 a~~~~~ 125 (139)
T 2hgn_A 120 NSTTGA 125 (139)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 876543
No 334
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.28 E-value=2.7e-12 Score=115.81 Aligned_cols=77 Identities=23% Similarity=0.427 Sum_probs=70.4
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCceeEeee----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~ 305 (854)
...++|||+|||..+++++|+++|+.||.|..|++ ++..+|||||+|.+.++|.+|++ ++..+.|++|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 35579999999999999999999999999999887 34578999999999999999999 9999999999999998
Q ss_pred Cch
Q 003036 306 LRG 308 (854)
Q Consensus 306 pk~ 308 (854)
++.
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 765
No 335
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.27 E-value=5e-12 Score=122.25 Aligned_cols=77 Identities=16% Similarity=0.307 Sum_probs=71.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeec
Q 003036 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~-----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a 219 (854)
.+.++|||+|||.++++++|+++|++||.|..++ .+++++|||||+|.+.++|++|++ +++..+.|++|.|.|+
T Consensus 85 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 85 DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRA 163 (167)
T ss_dssp HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEEC
T ss_pred cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeec
Confidence 3468999999999999999999999999999988 257789999999999999999997 8999999999999999
Q ss_pred CCC
Q 003036 220 IPK 222 (854)
Q Consensus 220 ~pk 222 (854)
.|+
T Consensus 164 ~pk 166 (167)
T 2cjk_A 164 EPR 166 (167)
T ss_dssp CCC
T ss_pred CCC
Confidence 886
No 336
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.27 E-value=5.2e-12 Score=126.55 Aligned_cols=78 Identities=18% Similarity=0.320 Sum_probs=72.0
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeeec----CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET----PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit----~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~p 306 (854)
...+|||+|||..+++++|+++|+.||.|+.|++. +.++|||||+|.+.++|.+|++.|||..|.|++|+|+|+..
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~ 166 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS 166 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 45699999999999999999999999999998873 55789999999999999999999999999999999999987
Q ss_pred ch
Q 003036 307 RG 308 (854)
Q Consensus 307 k~ 308 (854)
..
T Consensus 167 ~~ 168 (177)
T 2f3j_A 167 QI 168 (177)
T ss_dssp GG
T ss_pred CC
Confidence 54
No 337
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.27 E-value=7.6e-12 Score=124.31 Aligned_cols=81 Identities=17% Similarity=0.329 Sum_probs=74.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeee
Q 003036 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (854)
Q Consensus 144 e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~ 218 (854)
..+.++|||+|||+++++++|+++|++||.|..++. +++++|||||+|.+.++|++|++.|+|..|.|+.|+|.|
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 356799999999999999999999999999999883 566799999999999999999999999999999999999
Q ss_pred cCCCCC
Q 003036 219 SIPKDN 224 (854)
Q Consensus 219 a~pk~~ 224 (854)
+.++..
T Consensus 191 a~~~~~ 196 (198)
T 2yh0_A 191 ASVGAK 196 (198)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 987653
No 338
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=1.9e-11 Score=112.90 Aligned_cols=83 Identities=11% Similarity=0.253 Sum_probs=72.1
Q ss_pred CCCCCcEEEEcCCCCCCC-----------HHHHHHHhhccCCeEEEEe-CccccceEEEeeCCHHHHHHHHHHhcceecC
Q 003036 143 DEHPSRTLLLRKINSNIE-----------DSELKALFEQYGDVRTFYR-ASKHCGFVTISYYDIRAARNAMKSLQNKLTR 210 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vT-----------EedL~elFsqfG~I~sv~~-tgksKGfAFVeF~d~edA~kAl~~Lng~~L~ 210 (854)
...++++|+|+||....+ +++|+++|++||.|..|.+ ...++|||||+|.+.++|++|++.|+|..+.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 456899999999944332 5899999999999999873 4568999999999999999999999999999
Q ss_pred CceeeeeecCCCCCC
Q 003036 211 SGKLDIHYSIPKDNP 225 (854)
Q Consensus 211 Gr~L~V~~a~pk~~~ 225 (854)
|++|+|.|+.++.+.
T Consensus 91 gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 91 GRQITAQAWDGTTDY 105 (112)
T ss_dssp TEECEEEECCSCCCS
T ss_pred CcEEEEEEeCCCCCc
Confidence 999999999876543
No 339
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=2.5e-12 Score=121.90 Aligned_cols=81 Identities=20% Similarity=0.217 Sum_probs=71.2
Q ss_pred ccceeeecCCCCCCHHHHhhhhcccCce----eEeee----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003036 232 QGTLVVFNLDSSVSNDELHHIFGVYGEI----KEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 303 (854)
Q Consensus 232 ~~tLfV~NLp~svTeedLreiFs~fG~I----~~Vri----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~ 303 (854)
..+|||+|||+++++++|+++|++||.| ..|++ +++++|||||+|.+.++|++|++. |+..|.|+.|+|..
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~ 101 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFR 101 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEE
Confidence 4689999999999999999999999975 45655 466789999999999999999996 99999999999999
Q ss_pred ccCchhhhHh
Q 003036 304 SHLRGLRKCL 313 (854)
Q Consensus 304 a~pk~~Rr~l 313 (854)
+.+++.++.+
T Consensus 102 a~~~e~~~~~ 111 (123)
T 2dha_A 102 STAAEVQQVL 111 (123)
T ss_dssp ECHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9887766544
No 340
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.27 E-value=4.4e-12 Score=120.77 Aligned_cols=77 Identities=13% Similarity=0.159 Sum_probs=67.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeE--EEE----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeee
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVR--TFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~--sv~----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V 216 (854)
.....++|||+|||+++++++|+++|++| .|. .|+ ..++++|||||+|.+.++|++|++. ++..|.||.|+|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEE
Confidence 34567899999999999999999999999 666 776 2478899999999999999999974 779999999999
Q ss_pred eecCC
Q 003036 217 HYSIP 221 (854)
Q Consensus 217 ~~a~p 221 (854)
..+.+
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88754
No 341
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=1e-11 Score=114.89 Aligned_cols=73 Identities=12% Similarity=0.182 Sum_probs=62.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----C---ccccceEEEeeCCHHHHHHHHHHhcceecCCceeee
Q 003036 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----A---SKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----t---gksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V 216 (854)
..+++|||+|||+++++++|+++|++||+|. +.. + ++++|||||+|.+.++|++|++.|+ .+.|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4579999999999999999999999999999 551 2 5889999999999999999999984 367777766
Q ss_pred eecC
Q 003036 217 HYSI 220 (854)
Q Consensus 217 ~~a~ 220 (854)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 5443
No 342
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.26 E-value=1.1e-11 Score=120.47 Aligned_cols=75 Identities=19% Similarity=0.360 Sum_probs=70.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeec
Q 003036 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a 219 (854)
...++|||+|||+++++++|+++|++||.|..++. +++++|||||+|.+.++|++|++.|+|..+.|++|.|.|+
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 44789999999999999999999999999999883 6677999999999999999999999999999999999987
No 343
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.25 E-value=7.3e-12 Score=131.55 Aligned_cols=82 Identities=15% Similarity=0.233 Sum_probs=71.5
Q ss_pred CCCCCcEEEEcCCCCCC---------CHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceec----
Q 003036 143 DEHPSRTLLLRKINSNI---------EDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLT---- 209 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~v---------TEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L---- 209 (854)
.....++|||+||+.++ ++++|+++|++||+|..|++ ...+|||||+|.+.++|+.|+++|++..|
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v-~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~ 208 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRY-VESKNCGFVKFKYQANAEFAKEAMSNQTLLLPS 208 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEE-EGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTT
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEE-ECCCCEEEEEeCCHHHHHHHHHHhCCCEEeccc
Confidence 35678999999999998 79999999999999999986 46799999999999999999999999999
Q ss_pred --------CCceeeeeecCCCCCC
Q 003036 210 --------RSGKLDIHYSIPKDNP 225 (854)
Q Consensus 210 --------~Gr~L~V~~a~pk~~~ 225 (854)
.|+.|.|.|+....++
T Consensus 209 ~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 209 DKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp STTGGGGGGSCCCEEEECC-----
T ss_pred cccccccCCCCEEEEEEccCCCCH
Confidence 8999999999876544
No 344
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=3.4e-12 Score=120.97 Aligned_cols=76 Identities=14% Similarity=0.173 Sum_probs=66.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCe----EEEE----eCccccceEEEeeCCHHHHHHHHHHhcceecCCceeee
Q 003036 145 HPSRTLLLRKINSNIEDSELKALFEQYGDV----RTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~elFsqfG~I----~sv~----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V 216 (854)
...++|||+|||+++++++|+++|++||.| ..|+ .+++++|||||+|.+.++|++|++. ++..|.||.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 457899999999999999999999999975 3343 3678899999999999999999976 999999999999
Q ss_pred eecCC
Q 003036 217 HYSIP 221 (854)
Q Consensus 217 ~~a~p 221 (854)
..+.+
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 87643
No 345
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.25 E-value=1e-11 Score=123.19 Aligned_cols=82 Identities=16% Similarity=0.353 Sum_probs=69.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeee
Q 003036 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (854)
Q Consensus 144 e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~ 218 (854)
..+.++|||+|||+++++++|+++|++||.|..++. +++++|||||+|.+.++|.+|++. ++..|.|+.|.|.+
T Consensus 101 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~ 179 (196)
T 1l3k_A 101 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRK 179 (196)
T ss_dssp --CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEE
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEe
Confidence 446689999999999999999999999999999872 577899999999999999999976 79999999999999
Q ss_pred cCCCCCCC
Q 003036 219 SIPKDNPS 226 (854)
Q Consensus 219 a~pk~~~~ 226 (854)
+.++....
T Consensus 180 a~~k~~~~ 187 (196)
T 1l3k_A 180 ALSKQEMA 187 (196)
T ss_dssp CC------
T ss_pred cCChhHhc
Confidence 99886553
No 346
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.25 E-value=8.7e-12 Score=130.95 Aligned_cols=102 Identities=15% Similarity=0.148 Sum_probs=76.3
Q ss_pred eecCCceeeeeecCCCCCCCcccccccceeeecCCCCC---------CHHHHhhhhcccCceeEeeecCCcccEEEEEeC
Q 003036 207 KLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSV---------SNDELHHIFGVYGEIKEIRETPQKIHQKYIEFY 277 (854)
Q Consensus 207 ~~L~Gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~sv---------TeedLreiFs~fG~I~~Vrit~~skG~AFVeF~ 277 (854)
..+.|+.....+..............++|||+||+..+ ++++|+++|++||+|.+|++. ..+|||||+|.
T Consensus 109 ~D~fGr~k~~~~~d~~~g~gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~-~~kG~AFV~F~ 187 (240)
T 3u1l_A 109 LDCFGREKFADYREDMGGIGSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV-ESKNCGFVKFK 187 (240)
T ss_dssp BCTTSSBCGGGTC---------CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE-GGGTEEEEEES
T ss_pred cccccchhcccchhcccCcCccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE-CCCCEEEEEeC
Confidence 44456554433332222122223456799999999998 799999999999999999984 47999999999
Q ss_pred CHHHHHHHHHHhCCcee------------CCeEEEEEeccCchh
Q 003036 278 DTRAAEAALRELNSRYI------------AGKQIKLEPSHLRGL 309 (854)
Q Consensus 278 d~e~A~kAl~~LNG~~I------------~Gk~IkV~~a~pk~~ 309 (854)
+.++|++|+++|+|..| .|+.|.|.|++.+..
T Consensus 188 ~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 188 YQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp SHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred CHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCC
Confidence 99999999999999999 899999999987653
No 347
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.23 E-value=1.5e-11 Score=119.39 Aligned_cols=77 Identities=14% Similarity=0.360 Sum_probs=69.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE----eCccccceEEEeeCCHHHHHHHHHHhcceecC---Cceee
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTR---SGKLD 215 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~----~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~---Gr~L~ 215 (854)
...+.++|||+|||+++++++|+++|++||.|..++ .+++++|||||+|.+.++|++|++.|+|..+. +++|.
T Consensus 91 ~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 170 (175)
T 3nmr_A 91 NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMV 170 (175)
T ss_dssp SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCE
T ss_pred ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeE
Confidence 344678999999999999999999999999999988 24667999999999999999999999998776 49999
Q ss_pred eeec
Q 003036 216 IHYS 219 (854)
Q Consensus 216 V~~a 219 (854)
|.|+
T Consensus 171 V~~a 174 (175)
T 3nmr_A 171 VKFA 174 (175)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9987
No 348
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.23 E-value=1.8e-11 Score=122.39 Aligned_cols=79 Identities=27% Similarity=0.328 Sum_probs=73.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecC-CceeeeeecCC
Q 003036 144 EHPSRTLLLRKINSNIEDSELKALFEQYG-DVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTR-SGKLDIHYSIP 221 (854)
Q Consensus 144 e~psrtLfVgNLP~~vTEedL~elFsqfG-~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~-Gr~L~V~~a~p 221 (854)
..++++|||+|||.++++++|+++|++|| .|..++.....+|||||+|.+.++|.+|++.|+|..+. |++|+|.|+.+
T Consensus 117 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 117 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp CCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 35689999999999999999999999999 99999975667999999999999999999999999999 99999999876
Q ss_pred C
Q 003036 222 K 222 (854)
Q Consensus 222 k 222 (854)
+
T Consensus 197 ~ 197 (198)
T 1qm9_A 197 T 197 (198)
T ss_dssp C
T ss_pred c
Confidence 4
No 349
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.23 E-value=1.8e-11 Score=138.98 Aligned_cols=80 Identities=21% Similarity=0.349 Sum_probs=74.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeee
Q 003036 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (854)
Q Consensus 144 e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~-----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~ 218 (854)
..+.++|||+|||+++|+++|+++|++||.|..|.+ +++++|||||+|.+.++|.+||..|+|..|.|+.|.|.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 356789999999999999999999999999999873 677899999999999999999999999999999999999
Q ss_pred cCCCC
Q 003036 219 SIPKD 223 (854)
Q Consensus 219 a~pk~ 223 (854)
+.++.
T Consensus 179 a~~~~ 183 (437)
T 3pgw_S 179 ERGRT 183 (437)
T ss_pred eCCCC
Confidence 98654
No 350
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.22 E-value=2.8e-11 Score=124.76 Aligned_cols=79 Identities=27% Similarity=0.328 Sum_probs=73.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecC-CceeeeeecCC
Q 003036 144 EHPSRTLLLRKINSNIEDSELKALFEQYG-DVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTR-SGKLDIHYSIP 221 (854)
Q Consensus 144 e~psrtLfVgNLP~~vTEedL~elFsqfG-~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~-Gr~L~V~~a~p 221 (854)
..++++|||+|||+++++++|+++|++|| .|..++...+.+|||||+|.+.++|.+|++.|+|..+. |++|+|.|+.+
T Consensus 148 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp CCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 35689999999999999999999999999 99999975667999999999999999999999999999 99999999876
Q ss_pred C
Q 003036 222 K 222 (854)
Q Consensus 222 k 222 (854)
+
T Consensus 228 ~ 228 (229)
T 2adc_A 228 T 228 (229)
T ss_dssp C
T ss_pred C
Confidence 4
No 351
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.21 E-value=6.9e-12 Score=119.43 Aligned_cols=76 Identities=21% Similarity=0.268 Sum_probs=66.8
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCcee--Eeee----cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIK--EIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~--~Vri----t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a 304 (854)
...+|||+|||+++++++|+++|+.| .|. +|++ .+.++|||||+|.+.++|++|++. ++..|.|+.|+|.++
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFKS 118 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEEC
Confidence 45689999999999999999999999 566 7776 355789999999999999999984 779999999999998
Q ss_pred cCch
Q 003036 305 HLRG 308 (854)
Q Consensus 305 ~pk~ 308 (854)
.+++
T Consensus 119 ~~~e 122 (126)
T 2hgm_A 119 SQEE 122 (126)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7654
No 352
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.21 E-value=2.8e-11 Score=127.71 Aligned_cols=78 Identities=15% Similarity=0.262 Sum_probs=71.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecC-CceeeeeecC
Q 003036 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTR-SGKLDIHYSI 220 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~-Gr~L~V~~a~ 220 (854)
...++++|||+|||.++++++|+++|++||.|..|+.....+|||||+|.+.++|.+|++.|+|..|. |+.|+|.|++
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 34568999999999999999999999999999999965555799999999999999999999999999 9999999985
No 353
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=4e-11 Score=110.70 Aligned_cols=79 Identities=15% Similarity=0.290 Sum_probs=69.0
Q ss_pred ccccceeeecCCCCCC-----------HHHHhhhhcccCceeEeee-cCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 003036 230 INQGTLVVFNLDSSVS-----------NDELHHIFGVYGEIKEIRE-TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGK 297 (854)
Q Consensus 230 ~~~~tLfV~NLp~svT-----------eedLreiFs~fG~I~~Vri-t~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk 297 (854)
....+|+|.||..... +++|+++|++||.|.+|.+ ...++|||||+|.+.++|.+|++.|||..|.|+
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 92 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGR 92 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 3567999999954432 5899999999999999876 345789999999999999999999999999999
Q ss_pred EEEEEeccCch
Q 003036 298 QIKLEPSHLRG 308 (854)
Q Consensus 298 ~IkV~~a~pk~ 308 (854)
+|+|.|+.++.
T Consensus 93 ~l~v~~a~~~~ 103 (112)
T 2dit_A 93 QITAQAWDGTT 103 (112)
T ss_dssp ECEEEECCSCC
T ss_pred EEEEEEeCCCC
Confidence 99999998754
No 354
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.20 E-value=4e-11 Score=110.37 Aligned_cols=78 Identities=19% Similarity=0.237 Sum_probs=67.9
Q ss_pred cccceeeecCCC-----CCCHHHHhhhhcccCceeEeeec------CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 003036 231 NQGTLVVFNLDS-----SVSNDELHHIFGVYGEIKEIRET------PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQI 299 (854)
Q Consensus 231 ~~~tLfV~NLp~-----svTeedLreiFs~fG~I~~Vrit------~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~I 299 (854)
++++|+|.||.. +-++++|+++|++||.|.+|++. +.++|+|||+|.+.++|.+|++.|||..+.|++|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 457899999963 23789999999999999998872 3568999999999999999999999999999999
Q ss_pred EEEeccCch
Q 003036 300 KLEPSHLRG 308 (854)
Q Consensus 300 kV~~a~pk~ 308 (854)
+|.++.+..
T Consensus 87 ~v~~a~~~~ 95 (105)
T 2pe8_A 87 KACFYNLDK 95 (105)
T ss_dssp EEEECCHHH
T ss_pred EEEEcCHHH
Confidence 999997643
No 355
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.20 E-value=3.6e-11 Score=110.66 Aligned_cols=77 Identities=17% Similarity=0.232 Sum_probs=67.8
Q ss_pred CCCcEEEEcCCCC-----CCCHHHHHHHhhccCCeEEEEe------CccccceEEEeeCCHHHHHHHHHHhcceecCCce
Q 003036 145 HPSRTLLLRKINS-----NIEDSELKALFEQYGDVRTFYR------ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGK 213 (854)
Q Consensus 145 ~psrtLfVgNLP~-----~vTEedL~elFsqfG~I~sv~~------tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~ 213 (854)
.++++|+|+||.. +-++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|||+.+.||+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 5789999999963 2378999999999999999983 2467999999999999999999999999999999
Q ss_pred eeeeecCC
Q 003036 214 LDIHYSIP 221 (854)
Q Consensus 214 L~V~~a~p 221 (854)
|.|.|+.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999853
No 356
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.19 E-value=3.9e-11 Score=126.28 Aligned_cols=76 Identities=20% Similarity=0.321 Sum_probs=71.1
Q ss_pred ccccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 003036 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (854)
Q Consensus 230 ~~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~p 306 (854)
...++|||+|||.++|+++|+++|+.||.|.+|++ ...+|||||+|.+.++|.+|+..|||..|.|++|+|.++.+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFI-NRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE-eCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 35569999999999999999999999999999998 45689999999999999999999999999999999999875
No 357
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=3.8e-11 Score=111.10 Aligned_cols=77 Identities=14% Similarity=0.131 Sum_probs=65.1
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeee-----c---CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----T---PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLE 302 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-----t---~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~ 302 (854)
..++|||+|||+++++++|+++|++||.|. +.+ + +.++|||||+|.+.++|++|++.|+ .+.|+.|.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 457899999999999999999999999998 554 1 4678999999999999999999994 4788888887
Q ss_pred eccCchhh
Q 003036 303 PSHLRGLR 310 (854)
Q Consensus 303 ~a~pk~~R 310 (854)
.+.+...|
T Consensus 84 ~~~~~~~~ 91 (114)
T 2dnl_A 84 SSPTIKDK 91 (114)
T ss_dssp CCSSSCSE
T ss_pred cCCCcCCC
Confidence 76554433
No 358
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.14 E-value=3e-11 Score=115.24 Aligned_cols=79 Identities=20% Similarity=0.343 Sum_probs=68.5
Q ss_pred cceeeecC----CCCCCHHHHhhhhcccCceeEeee-----cCCcccEEEEEeCC----HHH----HHHHHH--HhCCce
Q 003036 233 GTLVVFNL----DSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYD----TRA----AEAALR--ELNSRY 293 (854)
Q Consensus 233 ~tLfV~NL----p~svTeedLreiFs~fG~I~~Vri-----t~~skG~AFVeF~d----~e~----A~kAl~--~LNG~~ 293 (854)
..|||+|| |+.+++++|+++|+.||+|.++++ ++.++|||||+|.+ +++ |.+|++ .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 999999999999999999999876 77889999999996 433 888988 789999
Q ss_pred eCCeEEEEEeccCchhhh
Q 003036 294 IAGKQIKLEPSHLRGLRK 311 (854)
Q Consensus 294 I~Gk~IkV~~a~pk~~Rr 311 (854)
|.|++|+|.+-+.....+
T Consensus 83 I~Gr~irV~ln~~g~~~~ 100 (136)
T 2j8a_A 83 IMGFKFEVILNKHSILNN 100 (136)
T ss_dssp ETTEEEEEEECCTTHHHH
T ss_pred ecCcEEEEEECcccHHHH
Confidence 999999999987765444
No 359
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.12 E-value=9.9e-11 Score=118.75 Aligned_cols=75 Identities=13% Similarity=0.222 Sum_probs=67.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCC
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 221 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~p 221 (854)
..++|||+|||+++++++|+++|++||.|..|+. +++++|||||+|.+.++|++|++.++ ..+.|++|.|.++..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 3589999999999999999999999999999873 46789999999999999999997654 589999999998654
No 360
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.10 E-value=5.5e-11 Score=113.44 Aligned_cols=73 Identities=19% Similarity=0.314 Sum_probs=64.9
Q ss_pred cEEEEcCC----CCCCCHHHHHHHhhccCCeEEEE-----eCccccceEEEeeCC----HHH----HHHHHH--Hhccee
Q 003036 148 RTLLLRKI----NSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYD----IRA----ARNAMK--SLQNKL 208 (854)
Q Consensus 148 rtLfVgNL----P~~vTEedL~elFsqfG~I~sv~-----~tgksKGfAFVeF~d----~ed----A~kAl~--~Lng~~ 208 (854)
.+|||+|| |+.+++++|+++|++||+|.++. .+++++|||||+|.+ +++ |.+|++ .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 99999999999999999999988 588999999999996 333 889988 789999
Q ss_pred cCCceeeeeecC
Q 003036 209 TRSGKLDIHYSI 220 (854)
Q Consensus 209 L~Gr~L~V~~a~ 220 (854)
|.|++|+|.+-.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999998743
No 361
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.09 E-value=1.9e-10 Score=105.74 Aligned_cols=77 Identities=17% Similarity=0.320 Sum_probs=67.3
Q ss_pred CCCCcEEEEcCC--CCCCC--------HHHHHHHhhccCCeEEEEeC-------ccccceEEEeeCCHHHHHHHHHHhcc
Q 003036 144 EHPSRTLLLRKI--NSNIE--------DSELKALFEQYGDVRTFYRA-------SKHCGFVTISYYDIRAARNAMKSLQN 206 (854)
Q Consensus 144 e~psrtLfVgNL--P~~vT--------EedL~elFsqfG~I~sv~~t-------gksKGfAFVeF~d~edA~kAl~~Lng 206 (854)
..|++.|.|.|+ |.++. +++|++.|++||+|.+|++. .+++|+|||+|.+.++|++|++.|||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 358999999998 44444 36899999999999999931 25789999999999999999999999
Q ss_pred eecCCceeeeeecC
Q 003036 207 KLTRSGKLDIHYSI 220 (854)
Q Consensus 207 ~~L~Gr~L~V~~a~ 220 (854)
+.+.||+|+|.|+.
T Consensus 82 ~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 82 RKFANRVVVTKYCD 95 (105)
T ss_dssp CEETTEECEEEEEC
T ss_pred CEeCCCEEEEEEeC
Confidence 99999999999975
No 362
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=1.9e-10 Score=105.18 Aligned_cols=65 Identities=22% Similarity=0.279 Sum_probs=59.3
Q ss_pred CCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCch
Q 003036 242 SSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 242 ~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~ 308 (854)
..+++++|+++|++||+|.+|++.+.++|||||+|.+.++|.+|++.+++ +.|++|+|.|++++.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 57899999999999999999999888999999999999999999998555 679999999998754
No 363
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.07 E-value=2.2e-10 Score=105.28 Aligned_cols=78 Identities=15% Similarity=0.250 Sum_probs=66.4
Q ss_pred cccceeeecC--CCCCC--------HHHHhhhhcccCceeEeeecC-------CcccEEEEEeCCHHHHHHHHHHhCCce
Q 003036 231 NQGTLVVFNL--DSSVS--------NDELHHIFGVYGEIKEIRETP-------QKIHQKYIEFYDTRAAEAALRELNSRY 293 (854)
Q Consensus 231 ~~~tLfV~NL--p~svT--------eedLreiFs~fG~I~~Vrit~-------~skG~AFVeF~d~e~A~kAl~~LNG~~ 293 (854)
+++.|+|.|+ |..+. +++|++.|++||.|.+|++.. .++|++||+|.+.++|.+|++.|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4568899998 33343 369999999999999998832 458999999999999999999999999
Q ss_pred eCCeEEEEEeccCch
Q 003036 294 IAGKQIKLEPSHLRG 308 (854)
Q Consensus 294 I~Gk~IkV~~a~pk~ 308 (854)
+.||+|+|+|+....
T Consensus 84 f~GR~i~v~~~~~~~ 98 (105)
T 3v4m_A 84 FANRVVVTKYCDPDS 98 (105)
T ss_dssp ETTEECEEEEECHHH
T ss_pred eCCCEEEEEEeCHHH
Confidence 999999999987644
No 364
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1.1e-09 Score=100.09 Aligned_cols=76 Identities=20% Similarity=0.260 Sum_probs=64.4
Q ss_pred CcEEEEcCCC-------CCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeec
Q 003036 147 SRTLLLRKIN-------SNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (854)
Q Consensus 147 srtLfVgNLP-------~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a 219 (854)
.++|-|.-.. .++++++|+++|++||+|..|++.++++|||||+|.+.++|++|++.+++ +.+++|+|.|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a 87 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWL 87 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECS
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEc
Confidence 3455555543 56899999999999999999997788999999999999999999988554 67999999999
Q ss_pred CCCCC
Q 003036 220 IPKDN 224 (854)
Q Consensus 220 ~pk~~ 224 (854)
.++..
T Consensus 88 ~~~~~ 92 (100)
T 2d9o_A 88 EGQPQ 92 (100)
T ss_dssp SCCCC
T ss_pred cCCCC
Confidence 87653
No 365
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.02 E-value=4.1e-10 Score=124.09 Aligned_cols=76 Identities=13% Similarity=0.250 Sum_probs=66.5
Q ss_pred CCCCCcEEEEcC--CCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecC---Cc--eee
Q 003036 143 DEHPSRTLLLRK--INSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTR---SG--KLD 215 (854)
Q Consensus 143 ~e~psrtLfVgN--LP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~---Gr--~L~ 215 (854)
...|+++|||+| |+..++|++|+++|++||+|..|++ ...||||||+|.+.++|++|++.|||+.+. |+ .|+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~-~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLM-PPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 92 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEEC-CTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEE-eCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEE
Confidence 356899999999 5789999999999999999999986 347899999999999999999999999873 44 577
Q ss_pred eeec
Q 003036 216 IHYS 219 (854)
Q Consensus 216 V~~a 219 (854)
|.|+
T Consensus 93 ~~~~ 96 (345)
T 3tht_A 93 LNFV 96 (345)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 7775
No 366
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.00 E-value=1.4e-10 Score=106.50 Aligned_cols=68 Identities=31% Similarity=0.500 Sum_probs=58.5
Q ss_pred eecCCCCCCHHHHhhhh------------cccCceeEeeec----CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003036 237 VFNLDSSVSNDELHHIF------------GVYGEIKEIRET----PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIK 300 (854)
Q Consensus 237 V~NLp~svTeedLreiF------------s~fG~I~~Vrit----~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~Ik 300 (854)
+.+|+..+++++|+++| ++||.|.+|++. +.++|||||+|.+.++|.+|++.|||..+.||+|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45667777777776666 999999999883 34689999999999999999999999999999999
Q ss_pred EEec
Q 003036 301 LEPS 304 (854)
Q Consensus 301 V~~a 304 (854)
|+|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 367
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.00 E-value=6.8e-10 Score=104.41 Aligned_cols=76 Identities=13% Similarity=0.182 Sum_probs=65.8
Q ss_pred CCCcEEEEcCCC--CCC---CHHHHHHHhhccCCeEEEEe---------CccccceEEEeeCCHHHHHHHHHHhcceecC
Q 003036 145 HPSRTLLLRKIN--SNI---EDSELKALFEQYGDVRTFYR---------ASKHCGFVTISYYDIRAARNAMKSLQNKLTR 210 (854)
Q Consensus 145 ~psrtLfVgNLP--~~v---TEedL~elFsqfG~I~sv~~---------tgksKGfAFVeF~d~edA~kAl~~Lng~~L~ 210 (854)
.|+++|+|+|+- .++ -++||++.|++||+|.+|++ +++++|++||+|.+.++|.+|++.|||+.+.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 479999999993 222 36899999999999999882 1346799999999999999999999999999
Q ss_pred CceeeeeecC
Q 003036 211 SGKLDIHYSI 220 (854)
Q Consensus 211 Gr~L~V~~a~ 220 (854)
||.|+|.|+.
T Consensus 98 GR~i~v~~~~ 107 (118)
T 3ue2_A 98 GRKVVAEVYD 107 (118)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEcC
Confidence 9999999874
No 368
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.98 E-value=6.3e-10 Score=122.60 Aligned_cols=75 Identities=20% Similarity=0.293 Sum_probs=66.4
Q ss_pred ccccceeeec--CCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeC---Ce--EEEEE
Q 003036 230 INQGTLVVFN--LDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIA---GK--QIKLE 302 (854)
Q Consensus 230 ~~~~tLfV~N--Lp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~---Gk--~IkV~ 302 (854)
.++.+|||+| |+..+++++|+++|++||+|++|++. ..||||||+|.+.++|++|++.|||+++. |+ .|.|.
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~-~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~ 94 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP-PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 94 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECC-TTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEE
Confidence 3567999999 57899999999999999999999884 47899999999999999999999999883 44 68888
Q ss_pred ecc
Q 003036 303 PSH 305 (854)
Q Consensus 303 ~a~ 305 (854)
|+.
T Consensus 95 ~~~ 97 (345)
T 3tht_A 95 FVE 97 (345)
T ss_dssp ECS
T ss_pred Eee
Confidence 874
No 369
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.95 E-value=2.6e-10 Score=104.59 Aligned_cols=68 Identities=21% Similarity=0.351 Sum_probs=58.8
Q ss_pred EcCCCCCCCHHHHHHHh------------hccCCeEEEEe----CccccceEEEeeCCHHHHHHHHHHhcceecCCceee
Q 003036 152 LRKINSNIEDSELKALF------------EQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 215 (854)
Q Consensus 152 VgNLP~~vTEedL~elF------------sqfG~I~sv~~----tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~ 215 (854)
+.+||..+++++|++.| ++||+|..|++ .++++|||||+|.+.++|++|++.|||+.+.||+|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 55667777887777666 99999999994 345799999999999999999999999999999999
Q ss_pred eeec
Q 003036 216 IHYS 219 (854)
Q Consensus 216 V~~a 219 (854)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.95 E-value=1.5e-09 Score=101.46 Aligned_cols=81 Identities=20% Similarity=0.192 Sum_probs=67.0
Q ss_pred cccceeeecCCCCC----------CHHHHhhhhcccCceeEeeecCC-cccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 003036 231 NQGTLVVFNLDSSV----------SNDELHHIFGVYGEIKEIRETPQ-KIHQKYIEFYDTRAAEAALRELNSRYIAGKQI 299 (854)
Q Consensus 231 ~~~tLfV~NLp~sv----------TeedLreiFs~fG~I~~Vrit~~-skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~I 299 (854)
+++.|.|.|+=..- -++||++.|++||.|.+|.+... .+|++||+|.+.++|.+|++.|||..++||+|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 45678888874322 13588999999999999988433 58999999999999999999999999999999
Q ss_pred EEEeccCchhhh
Q 003036 300 KLEPSHLRGLRK 311 (854)
Q Consensus 300 kV~~a~pk~~Rr 311 (854)
+|.|+....-.+
T Consensus 86 ~v~~~~~~~y~~ 97 (114)
T 3s6e_A 86 TAAYVPLPTYHN 97 (114)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEEEcHHHHHH
Confidence 999997665443
No 371
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.93 E-value=1.6e-09 Score=101.88 Aligned_cols=77 Identities=19% Similarity=0.361 Sum_probs=65.2
Q ss_pred cccceeeecCCC--CC---CHHHHhhhhcccCceeEeeec---------CCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 003036 231 NQGTLVVFNLDS--SV---SNDELHHIFGVYGEIKEIRET---------PQKIHQKYIEFYDTRAAEAALRELNSRYIAG 296 (854)
Q Consensus 231 ~~~tLfV~NLp~--sv---TeedLreiFs~fG~I~~Vrit---------~~skG~AFVeF~d~e~A~kAl~~LNG~~I~G 296 (854)
++++|+|.|+-. ++ -++||++.|++||.|.+|++. +.++|++||+|.+.++|.+|++.|||+.+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 467899999842 22 368999999999999998872 1346999999999999999999999999999
Q ss_pred eEEEEEeccCc
Q 003036 297 KQIKLEPSHLR 307 (854)
Q Consensus 297 k~IkV~~a~pk 307 (854)
|+|+|.|+...
T Consensus 99 R~i~v~~~~~~ 109 (118)
T 3ue2_A 99 RKVVAEVYDQE 109 (118)
T ss_dssp EECEEEEECHH
T ss_pred cEEEEEEcChH
Confidence 99999998654
No 372
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.91 E-value=2.6e-09 Score=96.09 Aligned_cols=84 Identities=19% Similarity=0.325 Sum_probs=73.3
Q ss_pred eeEEeecCCCCCCHHHHHHHHHhhCCCcceeE-Eecccccccc-eeEEEEEecCCccchHHHHHHhcCceecCCCCc-cE
Q 003036 684 TTLMIKNIPNKYTSKMLLAAIDERHKGTYDFI-YLPIDFKNKC-NVGYAFINMTDPSQIVPFYQSFNGKKWEKFNSE-KV 760 (854)
Q Consensus 684 TTvMirNIPnk~t~~~L~~~id~~~~g~yDf~-Ylp~Df~~~~-N~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~s~-K~ 760 (854)
|.|+||++|+.+|++.++++|... .++||+ |.|-+...+- --+.|||||++++++..|.+.|+|+.|...+.. -.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~--~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~ 79 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYP 79 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSC--CCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCc--ccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEee
Confidence 789999999999999999999975 378988 5788877664 468999999999999999999999999976544 45
Q ss_pred EEEEeeccc
Q 003036 761 ASLAYARIQ 769 (854)
Q Consensus 761 ~~v~yA~iQ 769 (854)
+.|.||-.|
T Consensus 80 a~VE~AP~q 88 (91)
T 1uw4_A 80 AIVEFAPFQ 88 (91)
T ss_dssp CEEEECSSC
T ss_pred eEEEEcCCC
Confidence 899999887
No 373
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.86 E-value=5.8e-09 Score=97.52 Aligned_cols=77 Identities=16% Similarity=0.171 Sum_probs=65.3
Q ss_pred CCCCcEEEEcCCCCCCC----------HHHHHHHhhccCCeEEEEeC-ccccceEEEeeCCHHHHHHHHHHhcceecCCc
Q 003036 144 EHPSRTLLLRKINSNIE----------DSELKALFEQYGDVRTFYRA-SKHCGFVTISYYDIRAARNAMKSLQNKLTRSG 212 (854)
Q Consensus 144 e~psrtLfVgNLP~~vT----------EedL~elFsqfG~I~sv~~t-gksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr 212 (854)
..|++.|.++|+=..-. ++||++.|++||.|..|++. ...+|+|||+|.+.++|++|++.|||+.+.||
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 35789999999832211 25788999999999999853 33589999999999999999999999999999
Q ss_pred eeeeeecC
Q 003036 213 KLDIHYSI 220 (854)
Q Consensus 213 ~L~V~~a~ 220 (854)
.|+|.|+.
T Consensus 84 ~i~v~~~~ 91 (114)
T 3s6e_A 84 MITAAYVP 91 (114)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEEc
Confidence 99999974
No 374
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=98.76 E-value=3.2e-09 Score=96.27 Aligned_cols=84 Identities=20% Similarity=0.363 Sum_probs=72.2
Q ss_pred eeEEeecCCCCCCHHHHHHHHHhhCCCcceeE-Eecccccccce-eEEEEEecCCccchHHHHHHhcCceecCCCCcc-E
Q 003036 684 TTLMIKNIPNKYTSKMLLAAIDERHKGTYDFI-YLPIDFKNKCN-VGYAFINMTDPSQIVPFYQSFNGKKWEKFNSEK-V 760 (854)
Q Consensus 684 TTvMirNIPnk~t~~~L~~~id~~~~g~yDf~-Ylp~Df~~~~N-~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~s~K-~ 760 (854)
-.|+||++|+.+|++.+++.|+.... .||+ |.|-|...+-+ -..|||||++++++..|.+.|+|+.|...+..+ .
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~--~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPA--HDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSS--EEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCc--cceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 47999999999999999999997544 5777 68888877654 588999999999999999999999999876554 4
Q ss_pred EEEEeeccc
Q 003036 761 ASLAYARIQ 769 (854)
Q Consensus 761 ~~v~yA~iQ 769 (854)
+.|.||..|
T Consensus 88 a~VE~APyq 96 (97)
T 2l08_A 88 AVVEFAPFQ 96 (97)
T ss_dssp EEEEECCCC
T ss_pred eEEEecCCC
Confidence 889999887
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.65 E-value=4.9e-08 Score=87.55 Aligned_cols=74 Identities=24% Similarity=0.388 Sum_probs=62.4
Q ss_pred cccceeeecCC----CCCCH----HHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003036 231 NQGTLVVFNLD----SSVSN----DELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLE 302 (854)
Q Consensus 231 ~~~tLfV~NLp----~svTe----edLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~ 302 (854)
+..||+|.-.+ ..+-. .+|.+.|.+||+|..+++.. +.+||+|.+.++|.+|++ |||..+.||.|+|.
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~---d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~ 81 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE---DKMWVTFLEGSSALNVLS-LNGKELLNRTITIA 81 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS---SSEEEEESSHHHHHHGGG-GTTCEETTEEEEEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec---CCEEEEECChHHHHHHHh-cCCeEeCCeEEEEE
Confidence 45688888776 23444 67999999999999999844 339999999999999998 99999999999999
Q ss_pred eccCch
Q 003036 303 PSHLRG 308 (854)
Q Consensus 303 ~a~pk~ 308 (854)
++++.-
T Consensus 82 lkt~dW 87 (91)
T 2dnr_A 82 LKSPSG 87 (91)
T ss_dssp ECCCSS
T ss_pred eCCCCc
Confidence 998753
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.62 E-value=8.8e-08 Score=90.54 Aligned_cols=80 Identities=19% Similarity=0.150 Sum_probs=70.4
Q ss_pred cccceeeecCCCC-CCHHHHhhhhcccCceeEeeecCCcccEEEEEeCC-HHHHHHHHHHhC--CceeCCeEEEEEeccC
Q 003036 231 NQGTLVVFNLDSS-VSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYD-TRAAEAALRELN--SRYIAGKQIKLEPSHL 306 (854)
Q Consensus 231 ~~~tLfV~NLp~s-vTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d-~e~A~kAl~~LN--G~~I~Gk~IkV~~a~p 306 (854)
....|+|+||+.. +++++|+++|++||+|..|.+... ...|||+|.+ .++|.+|++.|| +..|.|..++++...-
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g-~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~G 95 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG-AKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEG 95 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT-CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECCH
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecC-CCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECCC
Confidence 3458999999999 999999999999999999998443 3479999999 899999999995 7889999999999887
Q ss_pred chhhh
Q 003036 307 RGLRK 311 (854)
Q Consensus 307 k~~Rr 311 (854)
..+++
T Consensus 96 eeE~~ 100 (121)
T 1owx_A 96 EVEKE 100 (121)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77666
No 377
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.44 E-value=3.2e-07 Score=82.27 Aligned_cols=74 Identities=22% Similarity=0.274 Sum_probs=62.1
Q ss_pred CCCcEEEEcCCCC----CCCH----HHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeee
Q 003036 145 HPSRTLLLRKINS----NIED----SELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (854)
Q Consensus 145 ~psrtLfVgNLP~----~vTE----edL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V 216 (854)
+|..||+|.-.+. ++-+ .+|.+.|.+||+|..++... +.+||+|.+.++|.+|++ |+|..+.||.|+|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~---d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE---DKMWVTFLEGSSALNVLS-LNGKELLNRTITI 80 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS---SSEEEEESSHHHHHHGGG-GTTCEETTEEEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec---CCEEEEECChHHHHHHHh-cCCeEeCCeEEEE
Confidence 5778999998872 3434 67889999999999998522 349999999999999997 9999999999999
Q ss_pred eecCCC
Q 003036 217 HYSIPK 222 (854)
Q Consensus 217 ~~a~pk 222 (854)
+++.|.
T Consensus 81 ~lkt~d 86 (91)
T 2dnr_A 81 ALKSPS 86 (91)
T ss_dssp EECCCS
T ss_pred EeCCCC
Confidence 998754
No 378
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.40 E-value=9e-07 Score=83.63 Aligned_cols=76 Identities=14% Similarity=0.110 Sum_probs=64.4
Q ss_pred CCCCCcEEEEcCCCCC-CCHHHHHHHhhccCCeEEEEeCccccceEEEeeCC-HHHHHHHHHHhc--ceecCCceeeeee
Q 003036 143 DEHPSRTLLLRKINSN-IEDSELKALFEQYGDVRTFYRASKHCGFVTISYYD-IRAARNAMKSLQ--NKLTRSGKLDIHY 218 (854)
Q Consensus 143 ~e~psrtLfVgNLP~~-vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d-~edA~kAl~~Ln--g~~L~Gr~L~V~~ 218 (854)
.-.+...|||+||+++ +++++|+++|++||+|..|.. ....-.|||.|.+ .++|.+|++.|+ +..|.+..+.+..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~-~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDF-VRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEEC-CTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEE-ecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 3457899999999999 999999999999999999985 2333479999999 899999999995 6778888777755
Q ss_pred c
Q 003036 219 S 219 (854)
Q Consensus 219 a 219 (854)
.
T Consensus 93 L 93 (121)
T 1owx_A 93 L 93 (121)
T ss_dssp C
T ss_pred C
Confidence 3
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.39 E-value=3.6e-07 Score=82.42 Aligned_cols=73 Identities=22% Similarity=0.308 Sum_probs=61.3
Q ss_pred ccccceeeecCCCC-----CCH----HHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003036 230 INQGTLVVFNLDSS-----VSN----DELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIK 300 (854)
Q Consensus 230 ~~~~tLfV~NLp~s-----vTe----edLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~Ik 300 (854)
++..||+|.-++.+ +-. .+|.+.|..||+|..+|+.... +||+|.+.++|.+||+ |||..+.||.|+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~---~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~ 88 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ---MLVTFADSHSALSVLD-VDGMKVKGRAVK 88 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE---EEEECSCSHHHHHHHH-GGGSEETTEEEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc---EEEEEcChHHHHHHHh-cCCeeeCCeEEE
Confidence 35579999988743 333 5789999999999999984433 9999999999999998 999999999999
Q ss_pred EEeccC
Q 003036 301 LEPSHL 306 (854)
Q Consensus 301 V~~a~p 306 (854)
|.+..+
T Consensus 89 V~~k~~ 94 (95)
T 1ufw_A 89 ISGPSS 94 (95)
T ss_dssp EECCCC
T ss_pred EeccCC
Confidence 998654
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.29 E-value=8e-07 Score=90.94 Aligned_cols=66 Identities=20% Similarity=0.340 Sum_probs=58.3
Q ss_pred CCCHHHHhhhhcccCceeEeeec---------CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCch
Q 003036 243 SVSNDELHHIFGVYGEIKEIRET---------PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (854)
Q Consensus 243 svTeedLreiFs~fG~I~~Vrit---------~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk~ 308 (854)
.-.+++|++.|++||.|.+|.+. +.++|++||+|.+.++|.+|++.|||+.+.||+|.+.|+....
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~~ 214 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQER 214 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHHH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHHH
Confidence 34568999999999999998872 2678999999999999999999999999999999999986543
No 381
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.16 E-value=2.5e-06 Score=76.95 Aligned_cols=73 Identities=12% Similarity=0.192 Sum_probs=60.0
Q ss_pred CCCCcEEEEcCCCCC-----C-CH---HHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCcee
Q 003036 144 EHPSRTLLLRKINSN-----I-ED---SELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKL 214 (854)
Q Consensus 144 e~psrtLfVgNLP~~-----v-TE---edL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L 214 (854)
.+|..||+|.-++.. + ++ .+|.+.|.+||+|..++... .-+||+|.+.++|.+|++ |+|+.+.||.|
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~---d~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L 87 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQ---GQMLVTFADSHSALSVLD-VDGMKVKGRAV 87 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEET---TEEEEECSCSHHHHHHHH-GGGSEETTEEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEec---CcEEEEEcChHHHHHHHh-cCCeeeCCeEE
Confidence 357889999998743 2 32 56889999999999888411 129999999999999998 99999999999
Q ss_pred eeeecC
Q 003036 215 DIHYSI 220 (854)
Q Consensus 215 ~V~~a~ 220 (854)
+|.+..
T Consensus 88 ~V~~k~ 93 (95)
T 1ufw_A 88 KISGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEeccC
Confidence 998754
No 382
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.11 E-value=3.4e-06 Score=86.23 Aligned_cols=74 Identities=12% Similarity=0.150 Sum_probs=61.3
Q ss_pred CcEEEEcCCC-----CCCCHHHHHHHhhccCCeEEEEe---------CccccceEEEeeCCHHHHHHHHHHhcceecCCc
Q 003036 147 SRTLLLRKIN-----SNIEDSELKALFEQYGDVRTFYR---------ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSG 212 (854)
Q Consensus 147 srtLfVgNLP-----~~vTEedL~elFsqfG~I~sv~~---------tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr 212 (854)
++.+.+.|+- .+-.+++|++.|++||+|.++.+ +++++|++||+|.+.++|++|++.|+|+.+.||
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 3455555542 23456899999999999999883 227899999999999999999999999999999
Q ss_pred eeeeeecC
Q 003036 213 KLDIHYSI 220 (854)
Q Consensus 213 ~L~V~~a~ 220 (854)
.|.+.|..
T Consensus 204 ~i~~~~~~ 211 (222)
T 3dxb_A 204 KVVAEVYD 211 (222)
T ss_dssp BCEEEECC
T ss_pred EEEEEEcC
Confidence 99999964
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.92 E-value=2.2e-05 Score=72.47 Aligned_cols=71 Identities=23% Similarity=0.287 Sum_probs=64.6
Q ss_pred ccceeeecCCCCCCHHHHhhhhccc-----CceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003036 232 QGTLVVFNLDSSVSNDELHHIFGVY-----GEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 303 (854)
Q Consensus 232 ~~tLfV~NLp~svTeedLreiFs~f-----G~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~ 303 (854)
.++|-+-|||..+++..|+.+.++| |.|+.|.+.++ -+-|+|+|.|...|.+|.-+|+|.+|.|++|+|.-
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-CCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 4689999999999999999999999 99998887554 45699999999999999999999999999999865
No 384
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.59 E-value=0.00017 Score=66.73 Aligned_cols=71 Identities=11% Similarity=0.111 Sum_probs=65.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcc-----CCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeee
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQY-----GDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsqf-----G~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~ 217 (854)
..|+|-+-|||..+++..|+.+.+.| |.|+.|.. ....+=|+|+|.|...|-+|.-+|+|..|.||+|++.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L-~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILL-VSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEE-ETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEE-ecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 46899999999999999999999999 99999986 3455679999999999999999999999999999984
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.33 E-value=0.0014 Score=59.99 Aligned_cols=88 Identities=16% Similarity=0.229 Sum_probs=72.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhc-----cCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecC
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQ-----YGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsq-----fG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~ 220 (854)
..++|.|.|||++++++.|.-+|+. =|+|..+.... +-|+|+|.+.+.|++.++ -....|.+.+|.|....
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLA-QADHELHGAQLSLRPAP 82 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEECC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhc-CCcceecCeEEEEEcCC
Confidence 3579999999999999999999997 25899988634 789999999999999985 23567889999996654
Q ss_pred CCCCCCcccccccceeeecCCCCCC
Q 003036 221 PKDNPSEKEINQGTLVVFNLDSSVS 245 (854)
Q Consensus 221 pk~~~~~~~~~~~tLfV~NLp~svT 245 (854)
++ ...+|++.+|++.++
T Consensus 83 ~~--------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 83 PR--------APARLLLQGLPPGTS 99 (104)
T ss_dssp CC--------CCCCCCCCSCCCCCC
T ss_pred CC--------CcceEeeecCCCCCC
Confidence 43 345799999998775
No 386
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.91 E-value=0.0029 Score=57.85 Aligned_cols=78 Identities=21% Similarity=0.250 Sum_probs=65.7
Q ss_pred ccceeeecCCCCCCHHHHhhhhcc-----cCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 003036 232 QGTLVVFNLDSSVSNDELHHIFGV-----YGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (854)
Q Consensus 232 ~~tLfV~NLp~svTeedLreiFs~-----fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~p 306 (854)
..+|.|.|||+.+.++.|.-.|+. =|+|.+|...+ +-|+|+|.+.+.|++.++. ....|.+.+|.|....+
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~~ 83 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAPP 83 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECCC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCCC
Confidence 358999999999999999999986 26788888755 7899999999999999873 25678889999999888
Q ss_pred chhhhHh
Q 003036 307 RGLRKCL 313 (854)
Q Consensus 307 k~~Rr~l 313 (854)
+..+|.+
T Consensus 84 ~~~~r~l 90 (104)
T 2dhx_A 84 RAPARLL 90 (104)
T ss_dssp CCCCCCC
T ss_pred CCcceEe
Confidence 8877744
No 387
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.86 E-value=0.0013 Score=60.34 Aligned_cols=75 Identities=19% Similarity=0.253 Sum_probs=63.2
Q ss_pred CcEEEEcCCCCCC-CH----HHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCCceeeeeecCC
Q 003036 147 SRTLLLRKINSNI-ED----SELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 221 (854)
Q Consensus 147 srtLfVgNLP~~v-TE----edL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~Gr~L~V~~a~p 221 (854)
..+|+|.||+.+| .. +.++++|.+|+++..... -++-.-..|.|.++++|.+|...|++..+.|++|+|-|+.+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~-lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQY-FKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEE-ETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceee-cCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 3689999999865 32 567899999999888764 34445679999999999999999999999999999999875
Q ss_pred C
Q 003036 222 K 222 (854)
Q Consensus 222 k 222 (854)
.
T Consensus 84 ~ 84 (104)
T 1wey_A 84 L 84 (104)
T ss_dssp S
T ss_pred C
Confidence 4
No 388
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.68 E-value=0.0015 Score=59.90 Aligned_cols=75 Identities=19% Similarity=0.233 Sum_probs=60.9
Q ss_pred cceeeecCCCCC-CH----HHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCc
Q 003036 233 GTLVVFNLDSSV-SN----DELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 307 (854)
Q Consensus 233 ~tLfV~NLp~sv-Te----edLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~Gk~IkV~~a~pk 307 (854)
++|+|.||+..+ .. +.++++|..|+++.....-+. =.-..|.|.++++|.+|...|++..+.|++|+|-|+++.
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~ 84 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTL 84 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCS
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-ceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCCC
Confidence 579999998765 32 567889999998877554222 225689999999999999999999999999999999854
Q ss_pred h
Q 003036 308 G 308 (854)
Q Consensus 308 ~ 308 (854)
.
T Consensus 85 ~ 85 (104)
T 1wey_A 85 H 85 (104)
T ss_dssp S
T ss_pred C
Confidence 3
No 389
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.98 E-value=0.022 Score=53.51 Aligned_cols=77 Identities=17% Similarity=0.194 Sum_probs=63.5
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCCceeCC-eEEEEEeccCchh
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAG-KQIKLEPSHLRGL 309 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG~~I~G-k~IkV~~a~pk~~ 309 (854)
....|.|.+.|+.. ...|.+.|++||+|.+... .....+-.|+|.+..+|++||. .||..|.| -.|-|.+...+..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~-~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~d~~v 99 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM-SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCIDKNV 99 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE-CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECCCHHH
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc-CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECCCHHH
Confidence 45689999999885 6678889999999999887 5567899999999999999998 59999985 6777877665553
Q ss_pred h
Q 003036 310 R 310 (854)
Q Consensus 310 R 310 (854)
.
T Consensus 100 i 100 (119)
T 1wwh_A 100 M 100 (119)
T ss_dssp H
T ss_pred H
Confidence 3
No 390
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.61 E-value=0.039 Score=50.01 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=44.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhc
Q 003036 148 RTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQ 205 (854)
Q Consensus 148 rtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Ln 205 (854)
+.++| ++|+++...||.++|+.||.|.--.+ .-..|||.|.+++.|..|+..+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wi---dDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEE---ETTEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEEEEEE---cCCeEEEEecCHHHHHHHHHhcc
Confidence 56667 99999999999999999995433222 23579999999999999998764
No 391
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.57 E-value=0.041 Score=49.28 Aligned_cols=72 Identities=11% Similarity=0.127 Sum_probs=56.5
Q ss_pred cceeeecCCCCCCHHHHhhhhcccCceeEeee-cC------CcccEEEEEeCCHHHHHHHHHHhCCceeCC-----eEEE
Q 003036 233 GTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-TP------QKIHQKYIEFYDTRAAEAALRELNSRYIAG-----KQIK 300 (854)
Q Consensus 233 ~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-t~------~skG~AFVeF~d~e~A~kAl~~LNG~~I~G-----k~Ik 300 (854)
.+|+|++||+.+|++++.+.++.+.++..... .+ ..-.-|+|.|.+.+++..-.+.++|..+-+ .+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 36899999999999999999999887665443 11 122469999999999999999999988753 2445
Q ss_pred EEec
Q 003036 301 LEPS 304 (854)
Q Consensus 301 V~~a 304 (854)
|++|
T Consensus 82 VE~A 85 (91)
T 1uw4_A 82 VEFA 85 (91)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 6665
No 392
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=94.36 E-value=0.12 Score=48.43 Aligned_cols=70 Identities=16% Similarity=0.184 Sum_probs=57.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhcceecCC-ceeeeee
Q 003036 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRS-GKLDIHY 218 (854)
Q Consensus 146 psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Lng~~L~G-r~L~V~~ 218 (854)
..+-|.|-+.|+.. ...|.+.|++||+|.+... .....+..|.|.++.+|++||. .||+.|.| -.|-|..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~-~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM-SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE-CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc-CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEE
Confidence 35789999999884 7788889999999999886 3456899999999999999995 69988875 4445544
No 393
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.73 E-value=0.19 Score=45.47 Aligned_cols=72 Identities=10% Similarity=0.094 Sum_probs=54.6
Q ss_pred cceeeecCCCCCCHHHHhhhhcccCceeEeee-cCC------cccEEEEEeCCHHHHHHHHHHhCCceeCC-----eEEE
Q 003036 233 GTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-TPQ------KIHQKYIEFYDTRAAEAALRELNSRYIAG-----KQIK 300 (854)
Q Consensus 233 ~tLfV~NLp~svTeedLreiFs~fG~I~~Vri-t~~------skG~AFVeF~d~e~A~kAl~~LNG~~I~G-----k~Ik 300 (854)
-+|+|+.||+.+|++++.+.++..-++..... .++ .-.-|+|.|.+.++...-.+.++|..+-+ -+..
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~ 89 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAV 89 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeE
Confidence 47999999999999999999987665543222 111 12458999999999999999999988754 3455
Q ss_pred EEec
Q 003036 301 LEPS 304 (854)
Q Consensus 301 V~~a 304 (854)
|++|
T Consensus 90 VE~A 93 (97)
T 2l08_A 90 VEFA 93 (97)
T ss_dssp EEEC
T ss_pred EEec
Confidence 6665
No 394
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=93.19 E-value=0.18 Score=45.74 Aligned_cols=53 Identities=13% Similarity=0.261 Sum_probs=42.7
Q ss_pred ceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhC
Q 003036 234 TLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELN 290 (854)
Q Consensus 234 tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LN 290 (854)
.++| ..|+.+...||.++|+.||.|.--.+ ....|||.|.+++.|..|+..+.
T Consensus 18 Vf~l-~FP~ewKt~DI~~lFs~fggv~I~Wi---dDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 18 VLHV-TFPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp EEEE-ECCTTCCHHHHHHHHTTTCSCCCEEE---ETTEEEEECSCHHHHHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHhhccCCEEEEEE---cCCeEEEEecCHHHHHHHHHhcc
Confidence 4555 99999999999999999986432222 23589999999999999999764
No 395
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.85 E-value=0.041 Score=62.77 Aligned_cols=57 Identities=11% Similarity=0.293 Sum_probs=43.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHH
Q 003036 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMK 202 (854)
Q Consensus 145 ~psrtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~ 202 (854)
...|+|||. .|..+++.+|.+.|++||+|..+.......-||.|+|.+.+++..++.
T Consensus 51 qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 51 QAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred HhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 346899998 799999999999999999999998655555799999999999987764
No 396
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=92.64 E-value=0.11 Score=47.33 Aligned_cols=53 Identities=13% Similarity=0.258 Sum_probs=43.2
Q ss_pred ceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhC
Q 003036 234 TLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELN 290 (854)
Q Consensus 234 tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LN 290 (854)
.++| +.|+.+...||.++|+.||.|.--.+ ....|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv~I~Wi---dDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEEEEEEE---ETTEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCEEEEEE---cCCeEEEEecCHHHHHHHHHhcc
Confidence 4555 99999999999999999995433222 24589999999999999999875
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=92.42 E-value=0.17 Score=48.14 Aligned_cols=72 Identities=21% Similarity=0.272 Sum_probs=56.7
Q ss_pred cceeeecCCCCCCHHHHhhhhcccCceeE-eeec----------------C--CcccEEEEEeCCHHHHHHHHHHhCCce
Q 003036 233 GTLVVFNLDSSVSNDELHHIFGVYGEIKE-IRET----------------P--QKIHQKYIEFYDTRAAEAALRELNSRY 293 (854)
Q Consensus 233 ~tLfV~NLp~svTeedLreiFs~fG~I~~-Vrit----------------~--~skG~AFVeF~d~e~A~kAl~~LNG~~ 293 (854)
.-|.|.+.|++... .+.+.|++||.|.+ +..+ + ...++..|+|.+..+|.+||. -||..
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 46888899776654 56678999999977 3221 1 135788999999999999998 69999
Q ss_pred eCCeEEEEEeccC
Q 003036 294 IAGKQIKLEPSHL 306 (854)
Q Consensus 294 I~Gk~IkV~~a~p 306 (854)
|.|.-|-|.+..+
T Consensus 86 i~G~mIGV~Py~~ 98 (132)
T 3p3d_A 86 FNGVLLGVIPYTK 98 (132)
T ss_dssp ETTEECEEEECCH
T ss_pred eCcEEEEEEECCH
Confidence 9999999998853
No 398
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=92.18 E-value=0.095 Score=47.62 Aligned_cols=54 Identities=15% Similarity=0.238 Sum_probs=44.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhc
Q 003036 148 RTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQ 205 (854)
Q Consensus 148 rtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Ln 205 (854)
..++| ++|+++...||.++|+.||.|.--.+ .-..|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~I~Wi---dDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEEEEEE---ETTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEEEEEE---cCCeEEEEecCHHHHHHHHHhcc
Confidence 45666 99999999999999999995443333 34579999999999999998764
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=91.66 E-value=0.071 Score=60.81 Aligned_cols=56 Identities=13% Similarity=0.147 Sum_probs=43.8
Q ss_pred cccceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHH
Q 003036 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALR 287 (854)
Q Consensus 231 ~~~tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~ 287 (854)
..++|+|. .+..+++.+|.+.|++||.|.++.+......|+.|||.+.+++.+++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 45689997 799999999999999999999988877777899999999999987754
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=87.78 E-value=0.47 Score=45.19 Aligned_cols=70 Identities=13% Similarity=0.168 Sum_probs=52.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-eC-------------c-----cccceEEEeeCCHHHHHHHHHHhccee
Q 003036 148 RTLLLRKINSNIEDSELKALFEQYGDVRTFY-RA-------------S-----KHCGFVTISYYDIRAARNAMKSLQNKL 208 (854)
Q Consensus 148 rtLfVgNLP~~vTEedL~elFsqfG~I~sv~-~t-------------g-----ksKGfAFVeF~d~edA~kAl~~Lng~~ 208 (854)
..|.|-+.|++ ....+.+.|++||.|.+-. .. . ....+..|+|.++.+|++|+ ..||+.
T Consensus 8 ~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGAV 85 (132)
T ss_dssp CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTCE
T ss_pred eEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCeE
Confidence 56778888654 4566778999999997732 10 0 13567899999999999999 469999
Q ss_pred cCCceeeeeec
Q 003036 209 TRSGKLDIHYS 219 (854)
Q Consensus 209 L~Gr~L~V~~a 219 (854)
|.|..|-|...
T Consensus 86 i~G~mIGV~Py 96 (132)
T 3p3d_A 86 FNGVLLGVIPY 96 (132)
T ss_dssp ETTEECEEEEC
T ss_pred eCcEEEEEEEC
Confidence 99987766554
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=72.14 E-value=7.8 Score=44.57 Aligned_cols=55 Identities=15% Similarity=0.228 Sum_probs=45.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCccccceEEEeeCCHHHHHHHHHHhc
Q 003036 147 SRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQ 205 (854)
Q Consensus 147 srtLfVgNLP~~vTEedL~elFsqfG~I~sv~~tgksKGfAFVeF~d~edA~kAl~~Ln 205 (854)
...++|+ +|+.+...+|.++|+.||.|.-... ....|||.|.+.+.|..+++++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~wi---ddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCEEEEC---SSSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEE---cCCeEEEEECCHHHHHHHHHHHH
Confidence 3577776 9999999999999999997654443 44579999999999999998875
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=63.26 E-value=11 Score=43.36 Aligned_cols=54 Identities=13% Similarity=0.228 Sum_probs=44.2
Q ss_pred ceeeecCCCCCCHHHHhhhhcccCceeEeeecCCcccEEEEEeCCHHHHHHHHHHhCC
Q 003036 234 TLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNS 291 (854)
Q Consensus 234 tLfV~NLp~svTeedLreiFs~fG~I~~Vrit~~skG~AFVeF~d~e~A~kAl~~LNG 291 (854)
.++|+ +|..+...+|.++|+.||.|.-..+ ....|||.|.+.+.|..+++.++.
T Consensus 442 vl~v~-f~~~~~~~~i~~~fs~fg~v~V~wi---ddt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 442 VLHVT-FPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp EEEEE-CCTTCCHHHHHHHGGGGCCCEEEEC---SSSEEEEECSCHHHHHHHHHHHTT
T ss_pred EEEEe-CCCCCCHHHHHHHHHhcCCEEEEEE---cCCeEEEEECCHHHHHHHHHHHHh
Confidence 55555 9999999999999999996544444 346799999999999999998853
Done!