BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003037
(854 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 83/344 (24%), Positives = 136/344 (39%), Gaps = 64/344 (18%)
Query: 127 ISLVGMGGIGKTTLAQFAYNNNDVINH-FEKRI-WVCVSDPFDEFRIAKAIIEALEGSTP 184
+++ GM G GK+ LA A ++ ++ F + WV V + ++ L+
Sbjct: 150 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK-----QDKSGLLMKLQNLCT 204
Query: 185 SLGELNSLLERIYASIARKK-------------FLLVLDDVWTEDYNKWETFQRCLKNGL 231
L + S +R+ +I K LL+LDDVW + W LK
Sbjct: 205 RLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVW----DSW-----VLKAFD 255
Query: 232 RGSKILVTTRKMTVAQMMQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRK 291
+IL+TTR +V + ++ E S L E L+ F + L E
Sbjct: 256 SQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGL-EILSLFVNMKKA--DLPEQAHS 312
Query: 292 IVGKCKGLPLAAKTIGSLLRFKRSSREWQSILDSEIGQLEEFER----------GLLPPL 341
I+ +CKG PL IG+LLR W+ L Q ++F+R L +
Sbjct: 313 IIKECKGSPLVVSLIGALLR--DFPNRWEYYLKQ--LQNKQFKRIRKSSSYDYEALDEAM 368
Query: 342 LLSYNDMPSVIKWSFSYCAIFPKDYNIEKDELIKLWLAQGYIRPKENKELEMIVEEYFDY 401
+S + IK ++ +I KD + L LW E +E+E I++E+ +
Sbjct: 369 SISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILW-------DMETEEVEDILQEFVN- 420
Query: 402 LAARSFFQEFEREHTEGLVVRCKMHDIVHDFAQYLTKNECLSIE 445
F + G R +HD+ DF LT+ C ++
Sbjct: 421 --KSLLFCD-----RNGKSFRYYLHDLQVDF---LTEKNCSQLQ 454
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 73/302 (24%), Positives = 121/302 (40%), Gaps = 59/302 (19%)
Query: 127 ISLVGMGGIGKTTLAQFAYNNNDVINH-FEKRI-WVCVSDPFDEFRIAKAIIEALEGSTP 184
+++ GM G GK+ LA A ++ ++ F + WV V + ++ L+
Sbjct: 156 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK-----QDKSGLLMKLQNLCT 210
Query: 185 SLGELNSLLERIYASIARKK-------------FLLVLDDVWTEDYNKWETFQRCLKNGL 231
L + S +R+ +I K LL+LDDVW + W LK
Sbjct: 211 RLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVW----DSW-----VLKAFD 261
Query: 232 RGSKILVTTRKMTVAQMMQSNDVILIRELS---EQACWSLFEQLAFFGRPRSECEQLIEI 288
+IL+TTR +V + ++ E S E+ E L+ F + L E
Sbjct: 262 SQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKG----LEILSLFVNMKKA--DLPEQ 315
Query: 289 GRKIVGKCKGLPLAAKTIGSLLRFKRSSREWQSILDSEIGQLEEFER----------GLL 338
I+ +CKG PL IG+LLR W+ L Q ++F+R L
Sbjct: 316 AHSIIKECKGSPLVVSLIGALLR--DFPNRWEYYLKQL--QNKQFKRIRKSSSYDYEALD 371
Query: 339 PPLLLSYNDMPSVIKWSFSYCAIFPKDYNIEKDELIKLWLAQGYIRPKENKELEMIVEEY 398
+ +S + IK ++ +I KD + L LW E +E+E I++E+
Sbjct: 372 EAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILW-------DMETEEVEDILQEF 424
Query: 399 FD 400
+
Sbjct: 425 VN 426
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 119/299 (39%), Gaps = 53/299 (17%)
Query: 127 ISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAK----AIIEALEGS 182
+++ GM G GK+ LA A ++ ++ C S I K ++ L+
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRDHSLLEG-------CFSGGVHWVSIGKQDKSGLLMKLQNL 202
Query: 183 TPSLGELNSLLERIYASIARKK-------------FLLVLDDVWTEDYNKWETFQRCLKN 229
L + S +R+ +I K LL+LDDVW + W LK
Sbjct: 203 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVW----DPW-----VLKA 253
Query: 230 GLRGSKILVTTRKMTVA-QMMQSNDVILIRE-LSEQACWSLFEQLAFFGRPRSECEQLIE 287
+IL+TTR +V +M V+ + L + E L+ F + E L
Sbjct: 254 FDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKG---LEILSLFVNMKKE--DLPA 308
Query: 288 IGRKIVGKCKGLPLAAKTIGSLL-----RFKRSSREWQSILDSEIGQLEEFE-RGLLPPL 341
I+ +CKG PL IG+LL R+ R+ Q+ I + ++ L +
Sbjct: 309 EAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAM 368
Query: 342 LLSYNDMPSVIKWSFSYCAIFPKDYNIEKDELIKLWLAQGYIRPKENKELEMIVEEYFD 400
+S + IK ++ +I KD + L LW E +E+E I++E+ +
Sbjct: 369 SISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLW-------DLETEEVEDILQEFVN 420
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 70/299 (23%), Positives = 118/299 (39%), Gaps = 53/299 (17%)
Query: 127 ISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAK----AIIEALEGS 182
+++ GM G GK+ LA A ++ ++ C S I K ++ L+
Sbjct: 157 VTIYGMAGCGKSVLAAEAVRDHSLLEG-------CFSGGVHWVSIGKQDKSGLLMKLQNL 209
Query: 183 TPSLGELNSLLERIYASIARKK-------------FLLVLDDVWTEDYNKWETFQRCLKN 229
L + S +R+ +I K LL+LDDVW + W LK
Sbjct: 210 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVW----DPW-----VLKA 260
Query: 230 GLRGSKILVTTRKMTVA-QMMQSNDVILIRE-LSEQACWSLFEQLAFFGRPRSECEQLIE 287
+IL+TT +V +M V+ + L + E L+ F + E L
Sbjct: 261 FDNQCQILLTTSDKSVTDSVMGPKHVVPVESGLGREKG---LEILSLFVNMKKE--DLPA 315
Query: 288 IGRKIVGKCKGLPLAAKTIGSLL-----RFKRSSREWQSILDSEIGQLEEFE-RGLLPPL 341
I+ +CKG PL IG+LL R+ R+ Q+ I + ++ L +
Sbjct: 316 EAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAM 375
Query: 342 LLSYNDMPSVIKWSFSYCAIFPKDYNIEKDELIKLWLAQGYIRPKENKELEMIVEEYFD 400
+S + IK ++ +I KD + L LW E +E+E I++E+ +
Sbjct: 376 SISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLW-------DLETEEVEDILQEFVN 427
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 672 NIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCDTMPPLGKLPSLEILEIRG 728
N++SLR+E+ GI P+ I +L LK L + L P + LP LE L++RG
Sbjct: 184 NLQSLRLEW--TGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG 238
>pdb|2A5Y|B Chain B, Structure Of A Ced-4CED-9 Complex
pdb|2A5Y|C Chain C, Structure Of A Ced-4CED-9 Complex
pdb|3LQQ|A Chain A, Structure Of The Ced-4 Apoptosome
pdb|3LQQ|B Chain B, Structure Of The Ced-4 Apoptosome
pdb|3LQR|A Chain A, Structure Of Ced-4:ced-3 Complex
pdb|3LQR|B Chain B, Structure Of Ced-4:ced-3 Complex
Length = 549
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 81/187 (43%), Gaps = 28/187 (14%)
Query: 129 LVGMGGIGKTTLAQFAYNNNDVIN--HFEKRIWVCVSD--PFDEFRIAKAIIEALEG--- 181
L G G GK+ +A A + +D + +++ +W+ S P F + I+ L+
Sbjct: 157 LHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDD 216
Query: 182 --STPSLGELNSL-LERIY--ASIARKKFLLVLDDVWTEDYNKW--ETFQRCLKNGLRGS 234
+ PS+ + S+ L+R+ A I R L V DDV E+ +W E RC
Sbjct: 217 LLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQELRLRC-------- 268
Query: 235 KILVTTRKMTVAQMM-QSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIV 293
LVTTR + ++ Q+ + I + L C+ E +G P E+ ++ K +
Sbjct: 269 --LVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEA---YGMPMPVGEKEEDVLNKTI 323
Query: 294 GKCKGLP 300
G P
Sbjct: 324 ELSSGNP 330
>pdb|3D0G|A Chain A, Crystal Structure Of Spike Protein Receptor-Binding Domain
From The 2002-2003 Sars Coronavirus Human Strain
Complexed With Human-Civet Chimeric Receptor Ace2
pdb|3D0G|B Chain B, Crystal Structure Of Spike Protein Receptor-Binding Domain
From The 2002-2003 Sars Coronavirus Human Strain
Complexed With Human-Civet Chimeric Receptor Ace2
pdb|3D0H|A Chain A, Crystal Structure Of Spike Protein Receptor-Binding Domain
From The 2002-2003 Sars Coronavirus Civet Strain
Complexed With Human-Civet Chimeric Receptor Ace2
pdb|3D0H|B Chain B, Crystal Structure Of Spike Protein Receptor-Binding Domain
From The 2002-2003 Sars Coronavirus Civet Strain
Complexed With Human-Civet Chimeric Receptor Ace2
pdb|3D0I|A Chain A, Crystal Structure Of Spike Protein Receptor-Binding Domain
From The 2005-2006 Sars Coronavirus Civet Strain
Complexed With Human-Civet Chimeric Receptor Ace2
pdb|3D0I|B Chain B, Crystal Structure Of Spike Protein Receptor-Binding Domain
From The 2005-2006 Sars Coronavirus Civet Strain
Complexed With Human-Civet Chimeric Receptor Ace2
Length = 597
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 20/152 (13%)
Query: 649 FDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFY- 707
+ GQ I DV + E ++P E L ++ +PS+I + L +L +
Sbjct: 199 YSRGQLIEDV--EHTFEEIKPL--YEHLHAYVRAKLMNAYPSYISPIGCLPAHLLGDMWG 254
Query: 708 -----LCDTMPPLGKLPSLEILE--IRGNWNVKRVGDE----FLGVGGGDHLHGISTSSS 756
L P G+ P++++ + + W+ +R+ E F+ VG + G +S
Sbjct: 255 RFWTNLYSLTVPFGQKPNIDVTDAMVDQAWDAQRIFKEAEKFFVSVGLPNMTQGFWENSM 314
Query: 757 VIAFPKLKQVLFYNICHWEEWDFGKGDSITIM 788
+ +++ +CH WD GKGD +M
Sbjct: 315 LTDPGNVQKA----VCHPTAWDLGKGDFRILM 342
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 17/125 (13%)
Query: 685 ISGWPSWIVSLNKLKKLVLYQFY---LCDTMPPLGKLPSLEILEIRGNWNVKRVGDEFLG 741
+ G PS + LN LKKLVL + LC PSL L IRG NVK++ LG
Sbjct: 287 LKGLPSGMKGLNLLKKLVLSVNHFDQLCQISA--ANFPSLTHLYIRG--NVKKL---HLG 339
Query: 742 VGGGDHLHGIST---SSSVIAFPKLKQVLFYNICHWEEWDFGKGDSITIMPQLKKLEFER 798
VG + L + T S + I + N+ H + + + + + Q F+
Sbjct: 340 VGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQ----AFKE 395
Query: 799 CTELK 803
C +L+
Sbjct: 396 CPQLE 400
>pdb|1R42|A Chain A, Native Human Angiotensin Converting Enzyme-related
Carboxypeptidase (ace2)
pdb|1R4L|A Chain A, Inhibitor Bound Human Angiotensin Converting
Enzyme-Related Carboxypeptidase (Ace2)
Length = 615
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 20/152 (13%)
Query: 649 FDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFY- 707
+ GQ I DV + E ++P E L ++ +PS+I + L +L +
Sbjct: 217 YSRGQLIEDV--EHTFEEIKPL--YEHLHAYVRAKLMNAYPSYISPIGCLPAHLLGDMWG 272
Query: 708 -----LCDTMPPLGKLPSLEILE--IRGNWNVKRVGDE----FLGVGGGDHLHGISTSSS 756
L P G+ P++++ + + W+ +R+ E F+ VG + G +S
Sbjct: 273 RFWTNLYSLTVPFGQKPNIDVTDAMVDQAWDAQRIFKEAEKFFVSVGLPNMTQGFWENSM 332
Query: 757 VIAFPKLKQVLFYNICHWEEWDFGKGDSITIM 788
+ +++ +CH WD GKGD +M
Sbjct: 333 LTDPGNVQKA----VCHPTAWDLGKGDFRILM 360
>pdb|3SCK|A Chain A, Crystal Structure Of Spike Protein Receptor-Binding Domain
From A Predicted Sars Coronavirus Civet Strain Complexed
With Human-Civet Chimeric Receptor Ace2
pdb|3SCK|B Chain B, Crystal Structure Of Spike Protein Receptor-Binding Domain
From A Predicted Sars Coronavirus Civet Strain Complexed
With Human-Civet Chimeric Receptor Ace2
pdb|3SCL|A Chain A, Crystal Structure Of Spike Protein Receptor-Binding Domain
From Sars Coronavirus Epidemic Strain Complexed With
Human-Civet Chimeric Receptor Ace2
pdb|3SCL|B Chain B, Crystal Structure Of Spike Protein Receptor-Binding Domain
From Sars Coronavirus Epidemic Strain Complexed With
Human-Civet Chimeric Receptor Ace2
Length = 603
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 20/152 (13%)
Query: 649 FDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFY- 707
+ GQ I DV + E ++P E L ++ +PS+I + L +L +
Sbjct: 199 YSRGQLIEDV--EHTFEEIKPL--YEHLHAYVRAKLMNAYPSYISPIGCLPAHLLGDMWG 254
Query: 708 -----LCDTMPPLGKLPSLEILE--IRGNWNVKRVGDE----FLGVGGGDHLHGISTSSS 756
L P G+ P++++ + + W+ +R+ E F+ VG + G +S
Sbjct: 255 RFWTNLYSLTVPFGQKPNIDVTDAMVDQAWDAQRIFKEAEKFFVSVGLPNMTQGFWENSM 314
Query: 757 VIAFPKLKQVLFYNICHWEEWDFGKGDSITIM 788
+ +++ +CH WD GKGD +M
Sbjct: 315 LTDPGNVQKA----VCHPTAWDLGKGDFRILM 342
>pdb|2AJF|A Chain A, Structure Of Sars Coronavirus Spike Receptor-Binding
Domain Complexed With Its Receptor
pdb|2AJF|B Chain B, Structure Of Sars Coronavirus Spike Receptor-Binding
Domain Complexed With Its Receptor
pdb|3KBH|A Chain A, Crystal Structure Of Nl63 Respiratory Coronavirus
Receptor-Binding Domain Complexed With Its Human
Receptor
pdb|3KBH|B Chain B, Crystal Structure Of Nl63 Respiratory Coronavirus
Receptor-Binding Domain Complexed With Its Human
Receptor
pdb|3KBH|C Chain C, Crystal Structure Of Nl63 Respiratory Coronavirus
Receptor-Binding Domain Complexed With Its Human
Receptor
pdb|3KBH|D Chain D, Crystal Structure Of Nl63 Respiratory Coronavirus
Receptor-Binding Domain Complexed With Its Human
Receptor
Length = 597
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 20/152 (13%)
Query: 649 FDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFY- 707
+ GQ I DV + E ++P E L ++ +PS+I + L +L +
Sbjct: 199 YSRGQLIEDV--EHTFEEIKPL--YEHLHAYVRAKLMNAYPSYISPIGCLPAHLLGDMWG 254
Query: 708 -----LCDTMPPLGKLPSLEILE--IRGNWNVKRVGDE----FLGVGGGDHLHGISTSSS 756
L P G+ P++++ + + W+ +R+ E F+ VG + G +S
Sbjct: 255 RFWTNLYSLTVPFGQKPNIDVTDAMVDQAWDAQRIFKEAEKFFVSVGLPNMTQGFWENSM 314
Query: 757 VIAFPKLKQVLFYNICHWEEWDFGKGDSITIM 788
+ +++ +CH WD GKGD +M
Sbjct: 315 LTDPGNVQKA----VCHPTAWDLGKGDFRILM 342
>pdb|3SCI|A Chain A, Crystal Structure Of Spike Protein Receptor-Binding Domain
From A Predicted Sars Coronavirus Human Strain Complexed
With Human Receptor Ace2
pdb|3SCI|B Chain B, Crystal Structure Of Spike Protein Receptor-Binding Domain
From A Predicted Sars Coronavirus Human Strain Complexed
With Human Receptor Ace2
pdb|3SCJ|A Chain A, Crystal Structure Of Spike Protein Receptor-Binding Domain
From A Predicted Sars Coronavirus Civet Strain Complexed
With Human Receptor Ace2
pdb|3SCJ|B Chain B, Crystal Structure Of Spike Protein Receptor-Binding Domain
From A Predicted Sars Coronavirus Civet Strain Complexed
With Human Receptor Ace2
Length = 603
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 20/152 (13%)
Query: 649 FDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFY- 707
+ GQ I DV + E ++P E L ++ +PS+I + L +L +
Sbjct: 199 YSRGQLIEDV--EHTFEEIKPL--YEHLHAYVRAKLMNAYPSYISPIGCLPAHLLGDMWG 254
Query: 708 -----LCDTMPPLGKLPSLEILE--IRGNWNVKRVGDE----FLGVGGGDHLHGISTSSS 756
L P G+ P++++ + + W+ +R+ E F+ VG + G +S
Sbjct: 255 RFWTNLYSLTVPFGQKPNIDVTDAMVDQAWDAQRIFKEAEKFFVSVGLPNMTQGFWENSM 314
Query: 757 VIAFPKLKQVLFYNICHWEEWDFGKGDSITIM 788
+ +++ +CH WD GKGD +M
Sbjct: 315 LTDPGNVQKA----VCHPTAWDLGKGDFRILM 342
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 528 IVEIPKEIKKLIHLRFLKLVWLDIEELPETCCELFNVQTLEVLDCRSFRRLPQGFGKLVN 587
+ E+P EIK L +LR L L + LP F ++ D LP FG L N
Sbjct: 259 LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD-NMVTTLPWEFGNLCN 317
Query: 588 LRNL 591
L+ L
Sbjct: 318 LQFL 321
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 78/317 (24%), Positives = 128/317 (40%), Gaps = 67/317 (21%)
Query: 536 KKLIHLRFLKLVWLDIEELPETCCELFNVQTLEVLDCRSFR----RLPQGFG----KLVN 587
K L HL F++ I+ +P L N +TLE L S +LP+GF K+++
Sbjct: 105 KALKHLFFIQTGISSIDFIP-----LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLD 159
Query: 588 LRNLSKFIVSRSGGSKLEDLRQLK-HLRGSLKIQGL-GNVRDADEAKSAELEKKKNLLDL 645
+N + +S+ S L+ L +L G+ I G+ D+ +S +NLL +
Sbjct: 160 FQNNAIHYLSKEDMSSLQQATNLSLNLNGN-DIAGIEPGAFDSAVFQSLNFGGTQNLLVI 218
Query: 646 VLSFDGGQ-------RIGDVNDK----AIIEALQPPPNIESLRIEYHYI----------- 683
D++D+ A+ E L ++ES+ ++ HY
Sbjct: 219 FKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL-CEMSVESINLQKHYFFNISSNTFHCF 277
Query: 684 -----------GISGWPSWIVSLNKLKKLVLY--QF-YLCDTMPPLGKLPSLEILEIRGN 729
+S PS +V L+ LKKLVL +F LC PSL L I+G
Sbjct: 278 SGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISA--SNFPSLTHLSIKG- 334
Query: 730 WNVKRVGDEFLGVGGGDHLHG---ISTSSSVIAFPKLKQVLFYNICHWEEWDFGKGDSIT 786
N KR+ LG G ++L + S I + N+ H + + + ++
Sbjct: 335 -NTKRLE---LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS 390
Query: 787 IMPQLKKLEFERCTELK 803
LK F+ C +L+
Sbjct: 391 ----LKTEAFKECPQLE 403
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,640,857
Number of Sequences: 62578
Number of extensions: 1083687
Number of successful extensions: 2695
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 2677
Number of HSP's gapped (non-prelim): 32
length of query: 854
length of database: 14,973,337
effective HSP length: 107
effective length of query: 747
effective length of database: 8,277,491
effective search space: 6183285777
effective search space used: 6183285777
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)