Query 003037
Match_columns 854
No_of_seqs 562 out of 3965
Neff 9.8
Searched_HMMs 46136
Date Thu Mar 28 15:47:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003037.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003037hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 4.5E-84 9.8E-89 751.5 37.9 759 1-823 71-856 (889)
2 PLN03210 Resistant to P. syrin 100.0 8.9E-63 1.9E-67 607.0 49.1 685 53-828 133-908 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.4E-44 2.9E-49 383.3 13.8 278 102-386 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.9 6.8E-23 1.5E-27 254.1 16.8 290 458-771 117-414 (968)
5 KOG0444 Cytoskeletal regulator 99.9 2.7E-25 5.7E-30 233.8 -7.6 322 458-829 54-378 (1255)
6 PLN00113 leucine-rich repeat r 99.9 4.6E-22 1E-26 246.7 16.2 335 460-824 94-439 (968)
7 KOG4194 Membrane glycoprotein 99.8 1.3E-20 2.9E-25 197.7 4.0 321 458-821 101-447 (873)
8 PLN03210 Resistant to P. syrin 99.8 1.5E-18 3.1E-23 215.4 19.3 322 458-827 588-944 (1153)
9 KOG0444 Cytoskeletal regulator 99.8 2.5E-21 5.4E-26 204.1 -4.6 318 458-826 31-352 (1255)
10 KOG0472 Leucine-rich repeat pr 99.8 6.8E-21 1.5E-25 191.5 -5.5 317 459-825 206-540 (565)
11 KOG4194 Membrane glycoprotein 99.7 3.2E-19 6.9E-24 187.5 2.1 312 458-823 124-477 (873)
12 KOG0472 Leucine-rich repeat pr 99.6 7E-19 1.5E-23 177.2 -10.0 248 475-825 62-309 (565)
13 PRK04841 transcriptional regul 99.6 2.6E-13 5.6E-18 167.9 26.4 297 92-437 9-332 (903)
14 KOG0618 Serine/threonine phosp 99.6 7.3E-17 1.6E-21 179.2 -5.6 91 483-586 47-137 (1081)
15 KOG0618 Serine/threonine phosp 99.5 1E-15 2.2E-20 170.3 -1.8 101 460-572 46-147 (1081)
16 PRK15387 E3 ubiquitin-protein 99.5 7.2E-14 1.6E-18 160.9 13.2 85 482-591 223-307 (788)
17 PRK00411 cdc6 cell division co 99.5 3.5E-11 7.7E-16 133.5 29.5 317 94-427 27-375 (394)
18 PRK15370 E3 ubiquitin-protein 99.4 1.5E-13 3.2E-18 159.5 8.3 108 461-591 180-288 (754)
19 PRK15370 E3 ubiquitin-protein 99.4 7E-13 1.5E-17 153.9 9.3 104 458-582 198-302 (754)
20 COG2909 MalT ATP-dependent tra 99.4 6.1E-11 1.3E-15 132.5 21.8 302 91-438 13-339 (894)
21 KOG0617 Ras suppressor protein 99.3 1.8E-14 3.9E-19 128.9 -5.4 165 505-717 30-194 (264)
22 PRK15387 E3 ubiquitin-protein 99.3 5.8E-12 1.3E-16 145.4 13.1 240 458-804 221-460 (788)
23 TIGR03015 pepcterm_ATPase puta 99.3 2E-10 4.3E-15 120.3 23.1 183 123-310 42-242 (269)
24 KOG4658 Apoptotic ATPase [Sign 99.3 1.3E-12 2.9E-17 154.0 5.9 310 458-808 544-866 (889)
25 TIGR02928 orc1/cdc6 family rep 99.3 9.7E-10 2.1E-14 120.7 27.4 303 95-412 13-351 (365)
26 KOG0617 Ras suppressor protein 99.3 5.4E-14 1.2E-18 125.9 -5.5 170 528-739 23-192 (264)
27 PRK00080 ruvB Holliday junctio 99.3 7.5E-11 1.6E-15 126.5 15.2 265 95-412 23-311 (328)
28 PF01637 Arch_ATPase: Archaeal 99.2 4.3E-11 9.3E-16 122.7 12.0 194 99-305 1-233 (234)
29 TIGR00635 ruvB Holliday juncti 99.2 8.3E-10 1.8E-14 117.8 19.0 275 97-411 4-289 (305)
30 KOG4237 Extracellular matrix p 99.2 9E-13 2E-17 133.5 -4.9 104 482-597 68-175 (498)
31 PTZ00112 origin recognition co 99.1 2.3E-08 4.9E-13 113.1 24.0 214 95-310 753-986 (1164)
32 PF05729 NACHT: NACHT domain 99.0 1.8E-09 3.9E-14 104.0 12.5 143 125-273 1-163 (166)
33 COG3899 Predicted ATPase [Gene 99.0 6.6E-09 1.4E-13 123.6 18.7 314 98-435 1-384 (849)
34 cd00116 LRR_RI Leucine-rich re 99.0 7.4E-11 1.6E-15 127.2 0.8 69 502-573 17-92 (319)
35 KOG4237 Extracellular matrix p 99.0 5.9E-11 1.3E-15 120.6 -2.0 123 457-591 65-193 (498)
36 PRK06893 DNA replication initi 98.9 3.6E-08 7.8E-13 99.7 14.3 154 124-308 39-205 (229)
37 cd00116 LRR_RI Leucine-rich re 98.8 2E-09 4.3E-14 116.1 4.8 214 477-730 47-289 (319)
38 COG2256 MGS1 ATPase related to 98.8 1.8E-08 3.9E-13 103.9 10.7 171 96-302 29-208 (436)
39 PRK13342 recombination factor 98.8 5.3E-08 1.2E-12 107.8 15.4 179 96-308 11-198 (413)
40 PF13401 AAA_22: AAA domain; P 98.8 2.2E-08 4.8E-13 92.1 8.8 118 123-242 3-125 (131)
41 PRK14961 DNA polymerase III su 98.7 6.4E-07 1.4E-11 97.3 20.3 182 96-304 15-218 (363)
42 TIGR03420 DnaA_homol_Hda DnaA 98.7 1.7E-07 3.8E-12 95.2 14.8 172 102-310 22-205 (226)
43 PRK05564 DNA polymerase III su 98.7 5.3E-07 1.1E-11 96.2 19.0 180 97-306 4-190 (313)
44 PF05496 RuvB_N: Holliday junc 98.7 3.1E-07 6.8E-12 88.8 15.3 184 95-311 22-226 (233)
45 PRK04195 replication factor C 98.7 1.4E-06 3E-11 98.6 22.8 252 93-386 10-272 (482)
46 PRK12402 replication factor C 98.7 4.3E-07 9.3E-12 98.6 17.9 200 95-305 13-225 (337)
47 PRK07003 DNA polymerase III su 98.7 9.2E-07 2E-11 100.1 20.5 180 96-305 15-220 (830)
48 PRK14949 DNA polymerase III su 98.7 6.1E-07 1.3E-11 103.6 18.7 184 96-306 15-220 (944)
49 PRK14960 DNA polymerase III su 98.7 6.1E-07 1.3E-11 100.4 17.8 180 96-305 14-218 (702)
50 PTZ00202 tuzin; Provisional 98.7 1.5E-06 3.3E-11 91.5 19.5 171 90-272 255-433 (550)
51 PF13191 AAA_16: AAA ATPase do 98.7 3.8E-08 8.3E-13 96.7 7.5 48 98-148 1-48 (185)
52 PRK14963 DNA polymerase III su 98.7 1.3E-07 2.8E-12 105.8 12.3 198 96-303 13-214 (504)
53 PRK00440 rfc replication facto 98.7 1.1E-06 2.4E-11 94.5 18.7 184 94-304 14-201 (319)
54 PLN03025 replication factor C 98.7 7.1E-07 1.5E-11 95.4 16.8 184 95-303 11-197 (319)
55 COG1474 CDC6 Cdc6-related prot 98.6 2.2E-06 4.8E-11 91.9 20.0 209 96-306 16-238 (366)
56 KOG0532 Leucine-rich repeat (L 98.6 2.5E-09 5.4E-14 113.9 -2.4 188 486-729 80-270 (722)
57 PF14580 LRR_9: Leucine-rich r 98.6 3.9E-08 8.4E-13 93.2 5.4 125 458-596 18-150 (175)
58 cd00009 AAA The AAA+ (ATPases 98.6 4.6E-07 1E-11 85.1 12.5 125 100-244 1-131 (151)
59 COG3903 Predicted ATPase [Gene 98.6 9.8E-08 2.1E-12 99.4 7.9 291 123-436 13-313 (414)
60 PRK14957 DNA polymerase III su 98.6 2.1E-06 4.5E-11 96.4 18.8 185 96-307 15-222 (546)
61 PRK12323 DNA polymerase III su 98.6 1.3E-06 2.9E-11 97.5 16.8 181 96-306 15-225 (700)
62 PF13173 AAA_14: AAA domain 98.6 3.2E-07 7E-12 83.6 10.1 120 124-265 2-127 (128)
63 PRK14956 DNA polymerase III su 98.6 1.2E-06 2.6E-11 95.5 15.8 196 96-304 17-220 (484)
64 KOG3207 Beta-tubulin folding c 98.6 2.4E-08 5.1E-13 103.5 2.0 213 505-800 118-337 (505)
65 PRK06645 DNA polymerase III su 98.5 3.4E-06 7.4E-11 94.0 19.0 193 96-303 20-226 (507)
66 PRK07471 DNA polymerase III su 98.5 4E-06 8.6E-11 90.2 18.7 196 95-307 17-239 (365)
67 TIGR02397 dnaX_nterm DNA polym 98.5 6.4E-06 1.4E-10 90.1 20.7 186 95-307 12-219 (355)
68 PRK05896 DNA polymerase III su 98.5 3.5E-06 7.6E-11 94.5 18.5 197 95-307 14-222 (605)
69 TIGR02903 spore_lon_C ATP-depe 98.5 2.2E-06 4.8E-11 98.9 17.6 204 95-309 152-398 (615)
70 PRK09112 DNA polymerase III su 98.5 4.6E-06 9.9E-11 89.2 18.6 200 93-307 19-241 (351)
71 COG4886 Leucine-rich repeat (L 98.5 7.2E-08 1.6E-12 107.1 5.1 182 504-736 112-294 (394)
72 KOG4341 F-box protein containi 98.5 9.7E-09 2.1E-13 105.7 -1.7 307 482-854 139-461 (483)
73 PRK08691 DNA polymerase III su 98.5 2.2E-06 4.8E-11 97.1 16.4 181 96-306 15-220 (709)
74 PRK07994 DNA polymerase III su 98.5 2.7E-06 5.8E-11 96.9 17.1 195 96-306 15-220 (647)
75 PRK14964 DNA polymerase III su 98.5 4.8E-06 1E-10 92.0 18.6 182 96-303 12-214 (491)
76 PRK07940 DNA polymerase III su 98.5 5.2E-06 1.1E-10 90.1 18.3 181 97-306 5-213 (394)
77 PRK09087 hypothetical protein; 98.5 7.9E-06 1.7E-10 82.0 18.2 140 124-305 44-194 (226)
78 PRK14958 DNA polymerase III su 98.5 3.9E-06 8.5E-11 94.3 17.7 184 96-305 15-219 (509)
79 PRK14962 DNA polymerase III su 98.5 5.6E-06 1.2E-10 92.1 18.5 188 96-310 13-223 (472)
80 TIGR00678 holB DNA polymerase 98.5 6.5E-06 1.4E-10 80.8 16.6 91 202-302 95-187 (188)
81 PF14580 LRR_9: Leucine-rich r 98.5 1.8E-07 3.9E-12 88.8 5.3 89 475-578 13-103 (175)
82 PF05621 TniB: Bacterial TniB 98.5 8.8E-06 1.9E-10 82.8 17.5 207 96-305 33-260 (302)
83 PRK14951 DNA polymerase III su 98.5 5.9E-06 1.3E-10 94.0 18.1 198 96-306 15-225 (618)
84 PRK08903 DnaA regulatory inact 98.4 4.5E-06 9.7E-11 84.8 15.5 153 123-310 41-203 (227)
85 COG4886 Leucine-rich repeat (L 98.4 1.3E-07 2.8E-12 105.1 4.1 186 474-714 109-295 (394)
86 PRK13341 recombination factor 98.4 2.1E-06 4.6E-11 99.9 14.1 173 96-301 27-212 (725)
87 PRK14955 DNA polymerase III su 98.4 7.3E-06 1.6E-10 90.2 17.1 199 96-304 15-226 (397)
88 PRK08727 hypothetical protein; 98.4 8.5E-06 1.8E-10 82.6 16.4 149 124-303 41-201 (233)
89 PRK14969 DNA polymerase III su 98.4 9.3E-06 2E-10 92.0 18.0 185 96-306 15-221 (527)
90 PRK09111 DNA polymerase III su 98.4 1.2E-05 2.7E-10 91.6 19.0 199 95-306 22-233 (598)
91 PRK08084 DNA replication initi 98.4 1.1E-05 2.3E-10 82.1 16.6 154 124-308 45-211 (235)
92 cd01128 rho_factor Transcripti 98.4 5.3E-07 1.1E-11 91.2 6.7 90 123-213 15-113 (249)
93 KOG1259 Nischarin, modulator o 98.4 9.1E-08 2E-12 94.1 0.7 88 637-736 326-415 (490)
94 PRK14952 DNA polymerase III su 98.3 2.7E-05 5.8E-10 88.4 19.7 199 96-310 12-224 (584)
95 KOG2227 Pre-initiation complex 98.3 1.5E-05 3.3E-10 84.1 15.7 214 95-310 148-376 (529)
96 PRK07133 DNA polymerase III su 98.3 3E-05 6.4E-10 89.1 19.2 192 96-304 17-217 (725)
97 PRK14959 DNA polymerase III su 98.3 2.4E-05 5.2E-10 88.4 18.2 199 96-310 15-225 (624)
98 KOG2120 SCF ubiquitin ligase, 98.3 3.6E-08 7.8E-13 96.9 -3.6 116 634-772 254-374 (419)
99 PRK14970 DNA polymerase III su 98.3 3.4E-05 7.4E-10 84.5 19.2 183 95-303 15-206 (367)
100 KOG2028 ATPase related to the 98.3 7.5E-06 1.6E-10 83.1 12.2 159 121-301 159-331 (554)
101 PRK14950 DNA polymerase III su 98.3 4.3E-05 9.4E-10 88.2 20.4 196 96-306 15-221 (585)
102 PRK05642 DNA replication initi 98.3 2.3E-05 5E-10 79.5 16.0 156 124-310 45-212 (234)
103 PF13855 LRR_8: Leucine rich r 98.3 1.1E-06 2.3E-11 68.3 4.6 58 508-573 1-60 (61)
104 PRK07764 DNA polymerase III su 98.3 2.8E-05 6E-10 91.9 18.5 178 96-303 14-218 (824)
105 PRK14953 DNA polymerase III su 98.3 6.5E-05 1.4E-09 84.1 20.5 185 96-307 15-221 (486)
106 PHA02544 44 clamp loader, smal 98.3 1.9E-05 4.1E-10 84.7 15.7 154 91-271 15-171 (316)
107 PRK14954 DNA polymerase III su 98.3 4.7E-05 1E-09 87.1 19.4 202 96-306 15-229 (620)
108 PRK11331 5-methylcytosine-spec 98.3 4.9E-06 1.1E-10 89.7 10.7 120 97-228 175-298 (459)
109 KOG0532 Leucine-rich repeat (L 98.3 4.6E-08 9.9E-13 104.5 -4.6 106 473-592 90-195 (722)
110 PF14516 AAA_35: AAA-like doma 98.2 8.3E-05 1.8E-09 79.6 20.1 204 93-313 7-246 (331)
111 TIGR01242 26Sp45 26S proteasom 98.2 1.7E-05 3.8E-10 86.5 14.9 179 96-300 121-328 (364)
112 PRK06305 DNA polymerase III su 98.2 5.1E-05 1.1E-09 84.4 18.7 183 96-306 16-223 (451)
113 PRK08451 DNA polymerase III su 98.2 8.3E-05 1.8E-09 83.2 20.0 181 96-306 13-218 (535)
114 KOG1259 Nischarin, modulator o 98.2 3.7E-07 8E-12 89.9 1.3 80 639-730 306-385 (490)
115 PF00308 Bac_DnaA: Bacterial d 98.2 6.5E-05 1.4E-09 75.2 17.2 162 123-306 33-208 (219)
116 PRK09376 rho transcription ter 98.2 3.5E-06 7.7E-11 88.7 8.0 101 107-213 157-266 (416)
117 PRK14971 DNA polymerase III su 98.2 7.7E-05 1.7E-09 85.9 19.6 181 96-303 16-219 (614)
118 COG2255 RuvB Holliday junction 98.2 3.4E-05 7.4E-10 76.3 14.0 178 96-306 25-223 (332)
119 PRK14948 DNA polymerase III su 98.2 9.6E-05 2.1E-09 85.1 20.1 197 96-306 15-222 (620)
120 PRK14087 dnaA chromosomal repl 98.2 3.8E-05 8.2E-10 85.4 15.7 169 124-308 141-321 (450)
121 CHL00181 cbbX CbbX; Provisiona 98.1 0.00015 3.2E-09 75.7 18.7 135 125-275 60-211 (287)
122 KOG0989 Replication factor C, 98.1 3.3E-05 7.2E-10 77.2 12.8 187 92-299 31-223 (346)
123 PLN03150 hypothetical protein; 98.1 3.2E-06 6.8E-11 98.6 6.7 93 482-584 419-512 (623)
124 PRK06647 DNA polymerase III su 98.1 0.00014 2.9E-09 82.9 19.3 194 96-305 15-219 (563)
125 PF13855 LRR_8: Leucine rich r 98.1 4E-06 8.7E-11 65.0 4.3 60 481-551 1-61 (61)
126 TIGR02880 cbbX_cfxQ probable R 98.1 0.00012 2.5E-09 76.5 16.4 133 126-274 60-209 (284)
127 TIGR02881 spore_V_K stage V sp 98.1 0.00012 2.6E-09 75.9 16.3 161 98-274 7-192 (261)
128 KOG2543 Origin recognition com 98.1 0.00029 6.2E-09 72.8 18.3 168 95-272 4-192 (438)
129 TIGR03345 VI_ClpV1 type VI sec 98.1 4.6E-05 9.9E-10 91.3 14.8 154 97-272 187-362 (852)
130 PRK14965 DNA polymerase III su 98.1 0.00015 3.2E-09 83.4 18.4 196 96-307 15-222 (576)
131 PRK05563 DNA polymerase III su 98.1 0.00023 5E-09 81.4 19.6 193 96-304 15-218 (559)
132 PRK06620 hypothetical protein; 98.0 9.3E-05 2E-09 73.7 14.3 137 125-305 45-188 (214)
133 KOG1909 Ran GTPase-activating 98.0 6.1E-07 1.3E-11 90.8 -1.3 148 637-800 154-309 (382)
134 PLN03150 hypothetical protein; 98.0 9.2E-06 2E-10 94.7 8.2 110 460-579 419-532 (623)
135 TIGR02639 ClpA ATP-dependent C 98.0 5.8E-05 1.3E-09 89.8 15.0 156 97-273 182-358 (731)
136 KOG3207 Beta-tubulin folding c 98.0 1.1E-06 2.3E-11 91.5 0.3 107 458-573 120-233 (505)
137 PRK07399 DNA polymerase III su 98.0 0.00027 5.9E-09 74.6 17.7 196 97-306 4-221 (314)
138 PF12799 LRR_4: Leucine Rich r 98.0 7.8E-06 1.7E-10 57.9 3.9 34 540-573 2-35 (44)
139 TIGR00767 rho transcription te 98.0 2.7E-05 5.9E-10 82.6 9.7 90 123-213 167-265 (415)
140 PF12799 LRR_4: Leucine Rich r 98.0 7.8E-06 1.7E-10 58.0 3.8 41 508-556 1-41 (44)
141 PRK03992 proteasome-activating 98.0 0.0001 2.2E-09 80.8 14.3 157 97-274 131-316 (389)
142 PF05673 DUF815: Protein of un 98.0 0.00016 3.5E-09 71.3 13.9 126 92-244 22-152 (249)
143 TIGR00362 DnaA chromosomal rep 98.0 0.00039 8.4E-09 77.2 18.8 159 124-304 136-308 (405)
144 CHL00095 clpC Clp protease ATP 98.0 8.7E-05 1.9E-09 89.4 14.4 154 97-271 179-352 (821)
145 PRK05707 DNA polymerase III su 97.9 0.00036 7.7E-09 74.1 17.0 97 202-306 105-203 (328)
146 PRK14088 dnaA chromosomal repl 97.9 0.00029 6.3E-09 78.3 17.0 160 124-304 130-303 (440)
147 COG3267 ExeA Type II secretory 97.9 0.0009 2E-08 65.8 17.6 183 122-309 49-248 (269)
148 PF13177 DNA_pol3_delta2: DNA 97.8 0.00037 8.1E-09 66.1 13.8 139 101-261 1-162 (162)
149 PRK08769 DNA polymerase III su 97.8 0.001 2.2E-08 70.0 18.2 96 202-307 112-209 (319)
150 PF00004 AAA: ATPase family as 97.8 8E-05 1.7E-09 68.3 9.0 96 127-242 1-111 (132)
151 TIGR03346 chaperone_ClpB ATP-d 97.8 0.00023 5.1E-09 86.0 15.2 154 97-272 173-348 (852)
152 PRK12422 chromosomal replicati 97.8 0.0003 6.5E-09 78.0 14.8 154 124-299 141-306 (445)
153 PRK00149 dnaA chromosomal repl 97.8 0.00063 1.4E-08 76.5 17.7 180 124-325 148-348 (450)
154 PRK08058 DNA polymerase III su 97.8 0.00052 1.1E-08 73.5 16.1 150 98-272 6-181 (329)
155 COG0593 DnaA ATPase involved i 97.8 0.002 4.4E-08 69.1 20.2 168 123-307 112-291 (408)
156 PRK14086 dnaA chromosomal repl 97.8 0.0005 1.1E-08 77.6 15.9 155 125-301 315-483 (617)
157 PRK10536 hypothetical protein; 97.8 0.0005 1.1E-08 68.8 13.6 137 95-243 53-213 (262)
158 PRK11034 clpA ATP-dependent Cl 97.7 0.00032 6.9E-09 82.5 14.1 156 97-272 186-361 (758)
159 TIGR00602 rad24 checkpoint pro 97.7 0.00022 4.8E-09 81.6 12.2 60 87-147 74-133 (637)
160 PTZ00361 26 proteosome regulat 97.7 0.00047 1E-08 75.7 14.3 157 98-274 184-368 (438)
161 KOG1909 Ran GTPase-activating 97.7 1.7E-05 3.7E-10 80.6 2.7 96 631-730 204-309 (382)
162 PRK06090 DNA polymerase III su 97.7 0.0018 3.9E-08 68.1 17.8 177 104-306 10-201 (319)
163 TIGR03689 pup_AAA proteasome A 97.7 0.00075 1.6E-08 75.3 15.5 166 96-273 181-378 (512)
164 PRK08116 hypothetical protein; 97.7 0.00019 4.1E-09 74.1 10.1 103 125-242 115-220 (268)
165 smart00382 AAA ATPases associa 97.7 0.00033 7.1E-09 65.0 10.6 87 125-215 3-90 (148)
166 KOG2120 SCF ubiquitin ligase, 97.7 2.9E-06 6.3E-11 83.8 -3.6 165 632-824 202-374 (419)
167 PRK10865 protein disaggregatio 97.6 0.00056 1.2E-08 82.4 14.5 45 97-147 178-222 (857)
168 PRK06871 DNA polymerase III su 97.6 0.0031 6.7E-08 66.5 18.1 178 105-304 10-201 (325)
169 PTZ00454 26S protease regulato 97.6 0.0016 3.6E-08 71.0 16.3 156 98-273 146-329 (398)
170 KOG2982 Uncharacterized conser 97.6 2.1E-05 4.6E-10 77.9 1.4 61 505-573 68-132 (418)
171 KOG0531 Protein phosphatase 1, 97.6 1.1E-05 2.5E-10 89.7 -0.7 98 479-591 70-167 (414)
172 KOG4341 F-box protein containi 97.6 5.5E-06 1.2E-10 85.9 -3.1 265 508-829 138-417 (483)
173 COG1373 Predicted ATPase (AAA+ 97.6 0.0013 2.8E-08 72.2 15.0 119 126-269 39-163 (398)
174 TIGR02639 ClpA ATP-dependent C 97.5 0.0013 2.9E-08 78.3 15.5 123 97-230 454-580 (731)
175 CHL00176 ftsH cell division pr 97.5 0.0015 3.2E-08 75.6 15.0 179 96-299 182-387 (638)
176 PRK07993 DNA polymerase III su 97.5 0.0057 1.2E-07 65.2 18.1 180 104-306 9-204 (334)
177 TIGR03346 chaperone_ClpB ATP-d 97.5 0.0018 4E-08 78.4 16.2 138 97-242 565-717 (852)
178 PRK15386 type III secretion pr 97.5 0.00035 7.6E-09 74.8 8.7 75 636-729 48-122 (426)
179 PRK10865 protein disaggregatio 97.5 0.0016 3.4E-08 78.7 15.0 138 97-242 568-720 (857)
180 KOG1514 Origin recognition com 97.5 0.0055 1.2E-07 68.6 17.6 205 96-306 395-621 (767)
181 KOG3665 ZYG-1-like serine/thre 97.4 6.9E-05 1.5E-09 87.1 2.6 102 481-591 122-225 (699)
182 KOG0531 Protein phosphatase 1, 97.4 1.5E-05 3.3E-10 88.7 -2.8 101 476-591 90-191 (414)
183 COG0542 clpA ATP-binding subun 97.4 0.00051 1.1E-08 79.1 9.1 127 96-230 490-620 (786)
184 TIGR03345 VI_ClpV1 type VI sec 97.4 0.00077 1.7E-08 81.0 10.8 136 97-241 566-717 (852)
185 PRK06964 DNA polymerase III su 97.4 0.0066 1.4E-07 64.6 16.4 94 202-307 131-226 (342)
186 TIGR02640 gas_vesic_GvpN gas v 97.4 0.0098 2.1E-07 61.5 17.4 110 126-242 23-160 (262)
187 PRK12377 putative replication 97.3 0.00057 1.2E-08 69.3 7.9 101 124-241 101-204 (248)
188 PRK13531 regulatory ATPase Rav 97.3 0.0016 3.4E-08 71.3 11.6 152 97-272 20-193 (498)
189 PRK08939 primosomal protein Dn 97.3 0.0012 2.7E-08 69.3 10.5 121 101-241 135-259 (306)
190 KOG2228 Origin recognition com 97.3 0.0037 8E-08 63.8 13.0 174 96-273 23-219 (408)
191 KOG0991 Replication factor C, 97.3 0.0012 2.5E-08 63.5 9.0 121 91-238 21-148 (333)
192 PRK08181 transposase; Validate 97.3 0.0014 3E-08 67.3 10.2 101 125-243 107-209 (269)
193 COG1222 RPT1 ATP-dependent 26S 97.3 0.006 1.3E-07 62.9 14.4 201 98-325 152-391 (406)
194 COG2812 DnaX DNA polymerase II 97.3 0.001 2.2E-08 73.6 9.4 192 96-301 15-215 (515)
195 TIGR01241 FtsH_fam ATP-depende 97.3 0.004 8.6E-08 71.0 14.4 182 94-300 52-260 (495)
196 PRK10787 DNA-binding ATP-depen 97.3 0.0021 4.5E-08 76.4 12.5 166 96-273 321-506 (784)
197 PF02562 PhoH: PhoH-like prote 97.2 0.00041 8.9E-09 67.6 5.2 131 100-242 3-155 (205)
198 TIGR02902 spore_lonB ATP-depen 97.2 0.0015 3.2E-08 74.6 10.6 169 96-273 64-276 (531)
199 PRK15386 type III secretion pr 97.2 0.00048 1E-08 73.7 6.2 69 663-737 44-112 (426)
200 COG0470 HolB ATPase involved i 97.2 0.0026 5.7E-08 68.6 12.1 143 98-260 2-168 (325)
201 PF04665 Pox_A32: Poxvirus A32 97.2 0.00059 1.3E-08 68.0 6.3 37 124-162 13-49 (241)
202 PRK08118 topology modulation p 97.2 0.00018 4E-09 68.6 2.5 34 126-159 3-37 (167)
203 PRK06921 hypothetical protein; 97.2 0.0019 4E-08 66.7 10.1 99 124-242 117-224 (266)
204 KOG4579 Leucine-rich repeat (L 97.2 7.5E-05 1.6E-09 65.6 -0.2 91 479-581 51-141 (177)
205 PRK07952 DNA replication prote 97.2 0.0023 5E-08 64.7 10.2 102 124-241 99-203 (244)
206 TIGR00763 lon ATP-dependent pr 97.2 0.0038 8.2E-08 75.0 13.4 165 97-273 320-505 (775)
207 CHL00095 clpC Clp protease ATP 97.2 0.0023 5E-08 77.3 11.7 138 97-242 509-661 (821)
208 PF01695 IstB_IS21: IstB-like 97.1 0.00083 1.8E-08 64.7 6.4 101 123-242 46-149 (178)
209 PRK06526 transposase; Provisio 97.1 0.00093 2E-08 68.2 7.0 101 124-243 98-201 (254)
210 KOG2035 Replication factor C, 97.1 0.0029 6.2E-08 62.7 9.9 209 98-328 14-260 (351)
211 KOG1859 Leucine-rich repeat pr 97.1 2.9E-05 6.2E-10 85.9 -4.3 50 540-591 165-214 (1096)
212 PF07693 KAP_NTPase: KAP famil 97.1 0.042 9.2E-07 59.1 20.3 167 102-272 1-262 (325)
213 PRK09183 transposase/IS protei 97.1 0.0031 6.8E-08 64.8 10.8 101 124-242 102-205 (259)
214 smart00763 AAA_PrkA PrkA AAA d 97.1 0.00046 1E-08 72.7 4.6 50 98-147 52-101 (361)
215 PRK04132 replication factor C 97.1 0.015 3.2E-07 68.8 17.4 155 132-306 574-731 (846)
216 PRK11034 clpA ATP-dependent Cl 97.1 0.0058 1.3E-07 72.1 13.9 123 97-230 458-584 (758)
217 PRK04296 thymidine kinase; Pro 97.1 0.0016 3.5E-08 63.7 7.9 113 125-244 3-117 (190)
218 PRK12608 transcription termina 97.0 0.0043 9.4E-08 65.8 10.9 101 105-212 119-229 (380)
219 KOG0733 Nuclear AAA ATPase (VC 97.0 0.012 2.7E-07 64.6 14.2 98 96-213 189-292 (802)
220 PF14532 Sigma54_activ_2: Sigm 97.0 0.00089 1.9E-08 61.8 4.8 108 100-243 1-110 (138)
221 PRK07261 topology modulation p 97.0 0.002 4.4E-08 61.8 7.3 22 126-147 2-23 (171)
222 PRK11889 flhF flagellar biosyn 97.0 0.012 2.5E-07 62.8 13.1 114 123-238 240-357 (436)
223 TIGR02237 recomb_radB DNA repa 97.0 0.0028 6E-08 63.4 8.4 49 122-173 10-58 (209)
224 KOG4579 Leucine-rich repeat (L 96.9 9.7E-05 2.1E-09 64.9 -1.9 99 483-591 29-128 (177)
225 COG0466 Lon ATP-dependent Lon 96.9 0.0065 1.4E-07 68.3 11.6 166 96-273 322-508 (782)
226 PRK08699 DNA polymerase III su 96.9 0.014 3E-07 62.1 13.8 71 202-272 112-184 (325)
227 PF10443 RNA12: RNA12 protein; 96.9 0.029 6.3E-07 60.2 16.0 211 102-325 1-298 (431)
228 TIGR01243 CDC48 AAA family ATP 96.9 0.006 1.3E-07 73.1 12.5 182 96-302 177-383 (733)
229 PF00158 Sigma54_activat: Sigm 96.9 0.0028 6.1E-08 60.3 7.7 132 99-243 1-144 (168)
230 PRK05541 adenylylsulfate kinas 96.9 0.0039 8.5E-08 60.3 9.0 37 123-161 6-42 (176)
231 PRK06835 DNA replication prote 96.9 0.0018 3.8E-08 68.7 6.7 102 125-242 184-288 (329)
232 KOG2982 Uncharacterized conser 96.9 0.00062 1.3E-08 67.8 3.0 87 479-573 69-157 (418)
233 COG1223 Predicted ATPase (AAA+ 96.9 0.011 2.4E-07 58.0 11.2 159 95-274 119-298 (368)
234 PRK09361 radB DNA repair and r 96.9 0.0045 9.7E-08 62.7 9.3 47 122-171 21-67 (225)
235 KOG0741 AAA+-type ATPase [Post 96.9 0.036 7.8E-07 60.0 16.0 151 122-296 536-704 (744)
236 COG2607 Predicted ATPase (AAA+ 96.9 0.0068 1.5E-07 58.9 9.7 122 94-242 57-182 (287)
237 COG0542 clpA ATP-binding subun 96.9 0.0045 9.6E-08 71.6 9.8 153 97-271 170-344 (786)
238 KOG1969 DNA replication checkp 96.8 0.006 1.3E-07 68.4 10.3 90 121-228 323-412 (877)
239 PHA00729 NTP-binding motif con 96.8 0.0073 1.6E-07 59.6 9.7 25 123-147 16-40 (226)
240 cd01393 recA_like RecA is a b 96.8 0.0077 1.7E-07 61.0 10.1 88 122-212 17-123 (226)
241 cd00544 CobU Adenosylcobinamid 96.8 0.01 2.2E-07 56.5 10.1 149 127-301 2-167 (169)
242 PF07728 AAA_5: AAA domain (dy 96.8 0.00079 1.7E-08 62.3 2.5 89 127-228 2-90 (139)
243 PF08423 Rad51: Rad51; InterP 96.8 0.0077 1.7E-07 61.8 9.8 56 123-179 37-96 (256)
244 KOG3665 ZYG-1-like serine/thre 96.7 0.0012 2.5E-08 77.1 4.2 84 479-573 146-231 (699)
245 cd01123 Rad51_DMC1_radA Rad51_ 96.7 0.0096 2.1E-07 60.8 10.5 56 122-178 17-76 (235)
246 cd03214 ABC_Iron-Siderophores_ 96.7 0.023 5E-07 55.1 12.6 120 123-246 24-161 (180)
247 cd01120 RecA-like_NTPases RecA 96.7 0.0089 1.9E-07 56.9 9.6 40 126-167 1-40 (165)
248 CHL00195 ycf46 Ycf46; Provisio 96.7 0.018 3.8E-07 64.6 13.0 160 96-275 227-407 (489)
249 cd01394 radB RadB. The archaea 96.7 0.0079 1.7E-07 60.5 9.5 44 122-167 17-60 (218)
250 COG1484 DnaC DNA replication p 96.7 0.0092 2E-07 61.1 10.0 81 124-221 105-185 (254)
251 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.7 0.02 4.4E-07 53.1 11.4 106 123-247 25-131 (144)
252 PF13207 AAA_17: AAA domain; P 96.7 0.0015 3.2E-08 58.8 3.4 22 126-147 1-22 (121)
253 TIGR01243 CDC48 AAA family ATP 96.6 0.036 7.9E-07 66.5 15.9 179 96-300 452-657 (733)
254 COG1875 NYN ribonuclease and A 96.6 0.0076 1.6E-07 62.3 8.4 134 98-242 225-387 (436)
255 cd00561 CobA_CobO_BtuR ATP:cor 96.6 0.014 3.1E-07 54.4 9.6 117 125-244 3-139 (159)
256 cd03228 ABCC_MRP_Like The MRP 96.6 0.019 4.2E-07 55.1 11.0 118 123-247 27-159 (171)
257 PRK05800 cobU adenosylcobinami 96.6 0.0038 8.2E-08 59.6 5.9 152 126-303 3-169 (170)
258 PRK14974 cell division protein 96.6 0.041 8.9E-07 58.5 14.2 114 123-239 139-260 (336)
259 PRK06067 flagellar accessory p 96.6 0.019 4.2E-07 58.4 11.5 87 122-213 23-130 (234)
260 PRK12724 flagellar biosynthesi 96.6 0.012 2.6E-07 63.6 10.1 101 123-228 222-326 (432)
261 PF00448 SRP54: SRP54-type pro 96.6 0.0094 2E-07 58.4 8.7 87 124-212 1-92 (196)
262 COG2884 FtsE Predicted ATPase 96.6 0.041 9E-07 51.8 12.1 124 123-249 27-203 (223)
263 PF03215 Rad17: Rad17 cell cyc 96.6 0.022 4.7E-07 64.3 12.4 66 91-161 13-78 (519)
264 PF13671 AAA_33: AAA domain; P 96.5 0.012 2.6E-07 54.6 8.9 21 126-146 1-21 (143)
265 PRK06696 uridine kinase; Valid 96.5 0.0054 1.2E-07 61.8 6.9 44 101-147 2-45 (223)
266 cd03247 ABCC_cytochrome_bd The 96.5 0.03 6.5E-07 54.2 11.9 119 123-247 27-161 (178)
267 cd00983 recA RecA is a bacter 96.5 0.0076 1.7E-07 63.3 8.0 84 122-212 53-142 (325)
268 TIGR02238 recomb_DMC1 meiotic 96.5 0.014 2.9E-07 61.7 9.9 59 122-181 94-156 (313)
269 PRK15455 PrkA family serine pr 96.5 0.0021 4.6E-08 71.3 3.9 50 97-146 76-125 (644)
270 COG4608 AppF ABC-type oligopep 96.5 0.025 5.3E-07 56.9 11.0 125 123-250 38-177 (268)
271 TIGR02012 tigrfam_recA protein 96.5 0.0076 1.6E-07 63.3 7.8 84 122-212 53-142 (321)
272 KOG1859 Leucine-rich repeat pr 96.5 0.00011 2.4E-09 81.5 -6.0 76 504-591 183-259 (1096)
273 PRK07132 DNA polymerase III su 96.5 0.24 5.1E-06 51.9 18.7 157 123-305 17-184 (299)
274 PRK13695 putative NTPase; Prov 96.5 0.0071 1.5E-07 58.4 7.0 21 127-147 3-23 (174)
275 PTZ00494 tuzin-like protein; P 96.4 0.13 2.8E-06 55.1 16.2 171 91-273 365-544 (664)
276 TIGR03499 FlhF flagellar biosy 96.4 0.011 2.5E-07 61.7 8.7 88 123-212 193-281 (282)
277 TIGR01817 nifA Nif-specific re 96.4 0.019 4.1E-07 66.3 11.4 134 95-242 194-340 (534)
278 TIGR02974 phageshock_pspF psp 96.4 0.02 4.3E-07 61.2 10.7 131 99-242 1-143 (329)
279 cd03216 ABC_Carb_Monos_I This 96.4 0.022 4.7E-07 54.2 9.9 118 123-247 25-146 (163)
280 PRK09354 recA recombinase A; P 96.4 0.01 2.2E-07 62.8 8.2 85 122-213 58-148 (349)
281 KOG0733 Nuclear AAA ATPase (VC 96.4 0.058 1.3E-06 59.6 13.8 180 98-300 512-718 (802)
282 cd03223 ABCD_peroxisomal_ALDP 96.4 0.048 1E-06 52.0 12.1 116 123-246 26-151 (166)
283 PRK05703 flhF flagellar biosyn 96.4 0.051 1.1E-06 60.1 13.8 103 124-228 221-326 (424)
284 KOG0744 AAA+-type ATPase [Post 96.3 0.036 7.8E-07 56.4 11.1 81 123-213 176-260 (423)
285 cd03238 ABC_UvrA The excision 96.3 0.032 6.9E-07 53.6 10.5 123 123-257 20-161 (176)
286 KOG1051 Chaperone HSP104 and r 96.3 0.034 7.4E-07 65.5 12.5 122 98-230 563-687 (898)
287 cd03222 ABC_RNaseL_inhibitor T 96.3 0.039 8.4E-07 53.0 11.0 104 123-247 24-136 (177)
288 PRK14722 flhF flagellar biosyn 96.3 0.033 7.1E-07 59.9 11.5 89 123-213 136-225 (374)
289 COG0572 Udk Uridine kinase [Nu 96.3 0.0083 1.8E-07 58.5 6.3 77 123-204 7-85 (218)
290 PRK12723 flagellar biosynthesi 96.3 0.036 7.9E-07 60.0 11.9 106 123-230 173-283 (388)
291 KOG1644 U2-associated snRNP A' 96.3 0.005 1.1E-07 58.3 4.5 97 465-572 48-150 (233)
292 KOG1644 U2-associated snRNP A' 96.3 0.0064 1.4E-07 57.6 5.2 107 695-824 41-151 (233)
293 PF13604 AAA_30: AAA domain; P 96.3 0.0039 8.5E-08 61.3 3.9 109 123-243 17-131 (196)
294 cd01131 PilT Pilus retraction 96.3 0.0088 1.9E-07 59.0 6.4 110 125-245 2-111 (198)
295 cd03115 SRP The signal recogni 96.2 0.043 9.2E-07 52.9 11.1 22 126-147 2-23 (173)
296 PRK00771 signal recognition pa 96.2 0.041 9E-07 60.6 12.1 87 123-212 94-184 (437)
297 PRK11608 pspF phage shock prot 96.2 0.018 3.8E-07 61.7 9.0 135 97-243 6-151 (326)
298 PRK05439 pantothenate kinase; 96.2 0.026 5.5E-07 59.1 9.8 96 104-204 68-166 (311)
299 PRK05022 anaerobic nitric oxid 96.2 0.043 9.4E-07 62.7 12.6 133 96-243 186-332 (509)
300 PLN03187 meiotic recombination 96.2 0.03 6.4E-07 59.7 10.4 59 122-181 124-186 (344)
301 KOG0924 mRNA splicing factor A 96.2 0.032 6.9E-07 62.0 10.5 115 123-243 370-510 (1042)
302 cd01124 KaiC KaiC is a circadi 96.2 0.038 8.2E-07 54.0 10.4 44 127-174 2-45 (187)
303 cd01133 F1-ATPase_beta F1 ATP 96.1 0.04 8.7E-07 56.3 10.5 88 123-212 68-172 (274)
304 PRK12727 flagellar biosynthesi 96.1 0.024 5.2E-07 62.9 9.4 89 123-213 349-438 (559)
305 KOG0731 AAA+-type ATPase conta 96.1 0.11 2.4E-06 60.0 15.0 184 96-304 310-522 (774)
306 cd03246 ABCC_Protease_Secretio 96.1 0.034 7.3E-07 53.6 9.5 118 123-247 27-160 (173)
307 PRK15429 formate hydrogenlyase 96.1 0.031 6.6E-07 66.6 11.0 136 96-243 375-521 (686)
308 PLN00020 ribulose bisphosphate 96.1 0.016 3.6E-07 60.8 7.5 26 122-147 146-171 (413)
309 cd02025 PanK Pantothenate kina 96.1 0.022 4.7E-07 57.1 8.2 73 126-201 1-76 (220)
310 cd01122 GP4d_helicase GP4d_hel 96.1 0.079 1.7E-06 55.3 12.9 54 123-179 29-82 (271)
311 TIGR00554 panK_bact pantothena 96.1 0.026 5.6E-07 58.6 8.8 80 122-203 60-141 (290)
312 KOG2004 Mitochondrial ATP-depe 96.1 0.0094 2E-07 66.8 5.8 71 96-171 410-480 (906)
313 TIGR02239 recomb_RAD51 DNA rep 96.0 0.037 7.9E-07 58.7 10.2 58 122-180 94-155 (316)
314 PF00485 PRK: Phosphoribulokin 96.0 0.02 4.4E-07 56.3 7.8 79 126-207 1-87 (194)
315 PF00560 LRR_1: Leucine Rich R 96.0 0.0026 5.6E-08 37.4 0.8 19 541-559 2-20 (22)
316 cd03230 ABC_DR_subfamily_A Thi 96.0 0.034 7.3E-07 53.6 9.1 119 123-247 25-159 (173)
317 PLN03186 DNA repair protein RA 96.0 0.041 8.9E-07 58.7 10.4 59 122-181 121-183 (342)
318 PRK08233 hypothetical protein; 96.0 0.024 5.1E-07 55.2 8.0 24 124-147 3-26 (182)
319 PHA02244 ATPase-like protein 96.0 0.039 8.4E-07 58.5 9.8 22 126-147 121-142 (383)
320 PRK12726 flagellar biosynthesi 96.0 0.09 2E-06 56.0 12.4 91 122-214 204-296 (407)
321 COG1136 SalX ABC-type antimicr 95.9 0.11 2.4E-06 51.4 12.1 57 193-249 150-209 (226)
322 PF10236 DAP3: Mitochondrial r 95.9 0.19 4E-06 53.3 14.9 49 254-303 258-306 (309)
323 TIGR03881 KaiC_arch_4 KaiC dom 95.9 0.088 1.9E-06 53.4 12.1 114 123-241 19-164 (229)
324 PRK08533 flagellar accessory p 95.9 0.067 1.4E-06 54.1 11.0 49 123-175 23-71 (230)
325 TIGR00708 cobA cob(I)alamin ad 95.9 0.054 1.2E-06 51.2 9.5 116 124-243 5-140 (173)
326 TIGR00959 ffh signal recogniti 95.9 0.085 1.8E-06 58.1 12.5 90 123-213 98-192 (428)
327 TIGR01650 PD_CobS cobaltochela 95.9 0.27 5.9E-06 51.6 15.5 62 97-171 45-106 (327)
328 TIGR03877 thermo_KaiC_1 KaiC d 95.9 0.056 1.2E-06 55.1 10.5 50 122-175 19-68 (237)
329 KOG2739 Leucine-rich acidic nu 95.9 0.0043 9.3E-08 61.3 2.2 88 504-598 61-155 (260)
330 COG0468 RecA RecA/RadA recombi 95.9 0.036 7.7E-07 56.9 8.8 89 121-212 57-150 (279)
331 cd03369 ABCC_NFT1 Domain 2 of 95.9 0.17 3.7E-06 50.3 13.7 53 195-247 135-188 (207)
332 cd03229 ABC_Class3 This class 95.8 0.041 8.9E-07 53.3 8.8 118 123-247 25-165 (178)
333 PRK09270 nucleoside triphospha 95.8 0.038 8.2E-07 56.0 8.9 26 122-147 31-56 (229)
334 COG1618 Predicted nucleotide k 95.8 0.0083 1.8E-07 54.7 3.4 24 124-147 5-28 (179)
335 PF07724 AAA_2: AAA domain (Cd 95.8 0.0095 2.1E-07 56.9 4.1 91 124-229 3-105 (171)
336 PRK10867 signal recognition pa 95.8 0.11 2.4E-06 57.1 12.9 24 123-146 99-122 (433)
337 PRK04301 radA DNA repair and r 95.8 0.067 1.4E-06 57.2 11.0 58 122-180 100-161 (317)
338 cd01125 repA Hexameric Replica 95.8 0.11 2.3E-06 53.1 12.1 21 126-146 3-23 (239)
339 PTZ00301 uridine kinase; Provi 95.8 0.015 3.2E-07 57.6 5.5 25 123-147 2-26 (210)
340 TIGR02236 recomb_radA DNA repa 95.8 0.071 1.5E-06 56.8 11.1 58 122-180 93-154 (310)
341 COG1102 Cmk Cytidylate kinase 95.8 0.023 5E-07 51.9 6.0 44 126-182 2-45 (179)
342 PF08298 AAA_PrkA: PrkA AAA do 95.7 0.012 2.6E-07 61.6 4.8 51 96-146 60-110 (358)
343 TIGR00064 ftsY signal recognit 95.7 0.053 1.1E-06 56.2 9.5 89 122-213 70-164 (272)
344 PRK07667 uridine kinase; Provi 95.7 0.014 3E-07 57.3 4.9 38 106-147 3-40 (193)
345 TIGR00390 hslU ATP-dependent p 95.7 0.026 5.7E-07 60.7 7.1 81 97-179 12-104 (441)
346 PRK07276 DNA polymerase III su 95.7 0.51 1.1E-05 49.1 16.3 70 201-271 102-173 (290)
347 cd03215 ABC_Carb_Monos_II This 95.7 0.13 2.8E-06 50.0 11.5 25 123-147 25-49 (182)
348 cd03244 ABCC_MRP_domain2 Domai 95.6 0.16 3.6E-06 51.1 12.7 24 123-146 29-52 (221)
349 PRK13948 shikimate kinase; Pro 95.6 0.11 2.3E-06 50.2 10.6 25 123-147 9-33 (182)
350 KOG0734 AAA+-type ATPase conta 95.6 0.091 2E-06 57.1 10.8 52 96-147 303-360 (752)
351 KOG0730 AAA+-type ATPase [Post 95.6 0.38 8.2E-06 54.1 15.9 54 94-147 431-491 (693)
352 COG0464 SpoVK ATPases of the A 95.6 0.22 4.8E-06 57.0 15.1 157 97-274 242-424 (494)
353 PRK05917 DNA polymerase III su 95.6 0.44 9.6E-06 49.3 15.6 132 105-260 5-154 (290)
354 cd00267 ABC_ATPase ABC (ATP-bi 95.6 0.048 1E-06 51.5 8.2 119 124-248 25-145 (157)
355 KOG0735 AAA+-type ATPase [Post 95.6 0.054 1.2E-06 60.9 9.3 73 123-213 430-504 (952)
356 PF01583 APS_kinase: Adenylyls 95.6 0.016 3.4E-07 53.9 4.4 36 124-161 2-37 (156)
357 PF13238 AAA_18: AAA domain; P 95.6 0.0099 2.2E-07 53.9 3.1 21 127-147 1-21 (129)
358 COG1121 ZnuC ABC-type Mn/Zn tr 95.5 0.14 3.1E-06 51.5 11.3 123 123-247 29-203 (254)
359 PTZ00035 Rad51 protein; Provis 95.5 0.11 2.4E-06 55.6 11.4 58 122-180 116-177 (337)
360 PF00006 ATP-synt_ab: ATP synt 95.5 0.069 1.5E-06 52.9 9.0 93 109-212 5-114 (215)
361 KOG2123 Uncharacterized conser 95.5 0.0016 3.4E-08 64.4 -2.4 100 480-593 18-124 (388)
362 KOG0728 26S proteasome regulat 95.5 0.63 1.4E-05 45.7 15.0 189 99-309 148-366 (404)
363 PRK00889 adenylylsulfate kinas 95.5 0.078 1.7E-06 51.2 9.2 25 123-147 3-27 (175)
364 cd03213 ABCG_EPDR ABCG transpo 95.5 0.19 4.1E-06 49.4 12.0 119 123-244 34-172 (194)
365 COG0714 MoxR-like ATPases [Gen 95.5 0.039 8.5E-07 59.3 7.7 112 97-229 24-138 (329)
366 cd03217 ABC_FeS_Assembly ABC-t 95.4 0.13 2.8E-06 50.9 10.7 120 123-247 25-168 (200)
367 cd03253 ABCC_ATM1_transporter 95.4 0.19 4.2E-06 51.1 12.4 61 195-257 147-208 (236)
368 COG1419 FlhF Flagellar GTP-bin 95.4 0.29 6.2E-06 52.4 13.6 105 123-230 202-310 (407)
369 PRK13539 cytochrome c biogenes 95.4 0.095 2.1E-06 52.1 9.8 62 196-260 138-201 (207)
370 TIGR02858 spore_III_AA stage I 95.4 0.13 2.8E-06 53.0 10.9 126 105-247 97-233 (270)
371 cd03235 ABC_Metallic_Cations A 95.4 0.22 4.7E-06 49.9 12.4 25 123-147 24-48 (213)
372 cd01121 Sms Sms (bacterial rad 95.3 0.098 2.1E-06 56.7 10.3 82 123-212 81-167 (372)
373 TIGR00235 udk uridine kinase. 95.3 0.014 3.1E-07 58.0 3.7 26 122-147 4-29 (207)
374 COG2842 Uncharacterized ATPase 95.3 0.52 1.1E-05 48.0 14.5 126 95-233 70-195 (297)
375 cd03254 ABCC_Glucan_exporter_l 95.3 0.24 5.2E-06 50.2 12.7 53 195-247 149-202 (229)
376 PRK05480 uridine/cytidine kina 95.3 0.015 3.2E-07 58.1 3.7 26 122-147 4-29 (209)
377 cd03263 ABC_subfamily_A The AB 95.3 0.3 6.4E-06 49.1 13.2 25 123-147 27-51 (220)
378 PRK06731 flhF flagellar biosyn 95.3 0.17 3.6E-06 52.1 11.3 104 123-228 74-181 (270)
379 PF03969 AFG1_ATPase: AFG1-lik 95.3 0.034 7.4E-07 59.9 6.6 102 123-243 61-167 (362)
380 cd02019 NK Nucleoside/nucleoti 95.3 0.013 2.9E-07 46.4 2.6 22 126-147 1-22 (69)
381 TIGR03878 thermo_KaiC_2 KaiC d 95.3 0.053 1.2E-06 55.9 7.7 41 122-164 34-74 (259)
382 PRK06547 hypothetical protein; 95.3 0.025 5.3E-07 54.1 4.9 26 122-147 13-38 (172)
383 COG0563 Adk Adenylate kinase a 95.3 0.028 6.2E-07 53.9 5.2 22 126-147 2-23 (178)
384 PRK10820 DNA-binding transcrip 95.2 0.069 1.5E-06 61.1 9.2 154 96-262 203-379 (520)
385 TIGR03575 selen_PSTK_euk L-ser 95.2 0.28 6.1E-06 52.1 12.9 21 127-147 2-22 (340)
386 cd03232 ABC_PDR_domain2 The pl 95.2 0.17 3.6E-06 49.7 10.7 24 123-146 32-55 (192)
387 PRK05986 cob(I)alamin adenolsy 95.2 0.082 1.8E-06 50.8 8.0 119 123-243 21-158 (191)
388 COG4618 ArpD ABC-type protease 95.2 0.25 5.5E-06 53.8 12.4 23 124-146 362-384 (580)
389 cd03251 ABCC_MsbA MsbA is an e 95.2 0.36 7.8E-06 49.1 13.5 61 195-257 148-209 (234)
390 cd03282 ABC_MSH4_euk MutS4 hom 95.2 0.035 7.7E-07 54.8 5.8 121 123-250 28-158 (204)
391 cd02028 UMPK_like Uridine mono 95.2 0.029 6.2E-07 54.3 5.0 22 126-147 1-22 (179)
392 cd03281 ABC_MSH5_euk MutS5 hom 95.1 0.047 1E-06 54.4 6.6 121 124-249 29-160 (213)
393 COG1126 GlnQ ABC-type polar am 95.1 0.48 1E-05 46.0 12.8 123 123-248 27-201 (240)
394 PRK06762 hypothetical protein; 95.1 0.017 3.7E-07 55.2 3.3 24 124-147 2-25 (166)
395 cd03245 ABCC_bacteriocin_expor 95.1 0.28 6E-06 49.4 12.3 25 123-147 29-53 (220)
396 PF03308 ArgK: ArgK protein; 95.1 0.036 7.7E-07 55.4 5.5 65 105-173 14-78 (266)
397 cd03237 ABC_RNaseL_inhibitor_d 95.1 0.24 5.2E-06 50.7 11.8 25 123-147 24-48 (246)
398 cd02027 APSK Adenosine 5'-phos 95.1 0.19 4.1E-06 46.9 10.2 22 126-147 1-22 (149)
399 TIGR03740 galliderm_ABC gallid 95.1 0.31 6.6E-06 49.2 12.4 25 123-147 25-49 (223)
400 PRK14721 flhF flagellar biosyn 95.1 0.11 2.4E-06 56.8 9.6 88 123-212 190-278 (420)
401 PF00154 RecA: recA bacterial 95.1 0.062 1.3E-06 56.3 7.4 83 123-212 52-140 (322)
402 TIGR00382 clpX endopeptidase C 95.0 0.17 3.6E-06 55.4 10.9 51 96-146 76-138 (413)
403 PRK10733 hflB ATP-dependent me 95.0 0.19 4.1E-06 59.1 12.3 158 97-274 152-336 (644)
404 cd03226 ABC_cobalt_CbiO_domain 95.0 0.29 6.4E-06 48.5 12.1 25 123-147 25-49 (205)
405 PF00910 RNA_helicase: RNA hel 95.0 0.014 3E-07 51.1 2.2 21 127-147 1-21 (107)
406 PRK04328 hypothetical protein; 95.0 0.097 2.1E-06 53.7 8.7 41 123-165 22-62 (249)
407 PRK05973 replicative DNA helic 95.0 0.34 7.4E-06 48.7 12.2 148 123-277 63-228 (237)
408 cd02021 GntK Gluconate kinase 95.0 0.17 3.8E-06 47.2 9.7 22 126-147 1-22 (150)
409 TIGR00150 HI0065_YjeE ATPase, 94.9 0.035 7.7E-07 50.1 4.5 40 104-147 6-45 (133)
410 PRK06995 flhF flagellar biosyn 94.9 0.15 3.2E-06 56.8 10.3 89 123-213 255-344 (484)
411 PRK13538 cytochrome c biogenes 94.9 0.29 6.4E-06 48.5 11.7 25 123-147 26-50 (204)
412 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.9 0.57 1.2E-05 47.7 14.2 25 123-147 28-52 (238)
413 cd03252 ABCC_Hemolysin The ABC 94.9 0.48 1E-05 48.2 13.6 52 196-247 149-201 (237)
414 cd03231 ABC_CcmA_heme_exporter 94.9 0.27 5.8E-06 48.7 11.3 25 123-147 25-49 (201)
415 PRK11248 tauB taurine transpor 94.9 0.42 9.1E-06 49.3 13.1 25 123-147 26-50 (255)
416 PRK13647 cbiO cobalt transport 94.9 0.29 6.3E-06 51.0 12.1 24 123-146 30-53 (274)
417 COG0467 RAD55 RecA-superfamily 94.9 0.051 1.1E-06 56.3 6.3 52 122-177 21-72 (260)
418 PRK15453 phosphoribulokinase; 94.9 0.13 2.9E-06 52.4 9.0 78 123-202 4-89 (290)
419 PF13481 AAA_25: AAA domain; P 94.9 0.13 2.8E-06 50.5 8.9 41 125-165 33-81 (193)
420 PRK14723 flhF flagellar biosyn 94.9 0.18 3.8E-06 59.1 11.0 89 123-213 184-273 (767)
421 cd03233 ABC_PDR_domain1 The pl 94.8 0.44 9.5E-06 47.2 12.6 25 123-147 32-56 (202)
422 PRK13949 shikimate kinase; Pro 94.8 0.25 5.5E-06 47.2 10.5 22 126-147 3-24 (169)
423 PF12775 AAA_7: P-loop contain 94.8 0.019 4.1E-07 59.4 2.9 93 125-229 34-132 (272)
424 TIGR01069 mutS2 MutS2 family p 94.8 0.037 8E-07 65.9 5.6 24 123-146 321-344 (771)
425 TIGR02655 circ_KaiC circadian 94.8 0.17 3.6E-06 57.5 10.7 54 122-180 261-314 (484)
426 PRK03839 putative kinase; Prov 94.8 0.022 4.8E-07 55.3 3.1 22 126-147 2-23 (180)
427 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 94.8 0.48 1E-05 47.7 12.9 25 123-147 47-71 (224)
428 PRK03846 adenylylsulfate kinas 94.7 0.24 5.2E-06 48.8 10.4 26 122-147 22-47 (198)
429 cd03264 ABC_drug_resistance_li 94.7 0.25 5.5E-06 49.2 10.7 21 126-146 27-47 (211)
430 cd03283 ABC_MutS-like MutS-lik 94.7 0.26 5.7E-06 48.5 10.5 22 125-146 26-47 (199)
431 PRK09544 znuC high-affinity zi 94.7 0.32 6.9E-06 50.0 11.5 25 123-147 29-53 (251)
432 COG1703 ArgK Putative periplas 94.7 0.037 8E-07 56.1 4.4 67 107-177 38-104 (323)
433 COG5238 RNA1 Ran GTPase-activa 94.7 0.038 8.2E-07 54.8 4.3 37 694-730 212-253 (388)
434 PRK04040 adenylate kinase; Pro 94.7 0.027 5.8E-07 54.8 3.4 24 124-147 2-25 (188)
435 PRK13765 ATP-dependent proteas 94.7 0.042 9.1E-07 63.5 5.4 76 96-181 30-105 (637)
436 TIGR03522 GldA_ABC_ATP gliding 94.7 0.45 9.8E-06 50.4 13.0 25 123-147 27-51 (301)
437 COG0396 sufC Cysteine desulfur 94.7 0.62 1.3E-05 45.6 12.3 66 191-256 150-217 (251)
438 cd03240 ABC_Rad50 The catalyti 94.6 0.21 4.7E-06 49.4 9.8 60 196-257 132-195 (204)
439 PLN02348 phosphoribulokinase 94.6 0.14 2.9E-06 55.0 8.7 26 122-147 47-72 (395)
440 COG4088 Predicted nucleotide k 94.6 0.07 1.5E-06 50.8 5.8 23 125-147 2-24 (261)
441 PRK06002 fliI flagellum-specif 94.6 0.15 3.2E-06 56.0 9.1 87 123-212 164-263 (450)
442 PF07726 AAA_3: ATPase family 94.6 0.019 4.1E-07 50.9 1.9 27 127-155 2-28 (131)
443 COG1066 Sms Predicted ATP-depe 94.6 0.17 3.6E-06 53.7 9.1 82 123-213 92-178 (456)
444 COG1643 HrpA HrpA-like helicas 94.6 0.33 7.1E-06 57.7 12.5 131 103-244 52-206 (845)
445 KOG2739 Leucine-rich acidic nu 94.6 0.02 4.3E-07 56.8 2.2 79 501-590 36-117 (260)
446 PRK10463 hydrogenase nickel in 94.6 0.38 8.3E-06 49.7 11.5 87 121-213 101-194 (290)
447 PRK13543 cytochrome c biogenes 94.6 0.59 1.3E-05 46.7 12.9 25 123-147 36-60 (214)
448 PRK05201 hslU ATP-dependent pr 94.6 0.062 1.3E-06 58.0 6.0 52 96-147 14-73 (443)
449 TIGR01360 aden_kin_iso1 adenyl 94.6 0.029 6.2E-07 54.9 3.3 24 123-146 2-25 (188)
450 cd03250 ABCC_MRP_domain1 Domai 94.5 0.55 1.2E-05 46.5 12.6 25 123-147 30-54 (204)
451 KOG0729 26S proteasome regulat 94.5 0.17 3.8E-06 49.9 8.4 95 97-212 177-279 (435)
452 PF06745 KaiC: KaiC; InterPro 94.5 0.059 1.3E-06 54.5 5.6 48 123-174 18-66 (226)
453 PRK00625 shikimate kinase; Pro 94.5 0.027 5.8E-07 53.9 2.9 22 126-147 2-23 (173)
454 PF03796 DnaB_C: DnaB-like hel 94.5 0.26 5.6E-06 51.0 10.5 56 123-181 18-73 (259)
455 TIGR01425 SRP54_euk signal rec 94.5 0.42 9.1E-06 52.4 12.3 26 122-147 98-123 (429)
456 COG2401 ABC-type ATPase fused 94.5 0.083 1.8E-06 55.7 6.5 64 192-255 514-580 (593)
457 PRK11388 DNA-binding transcrip 94.5 0.12 2.6E-06 61.2 8.9 132 96-242 324-466 (638)
458 TIGR01420 pilT_fam pilus retra 94.5 0.076 1.7E-06 57.3 6.7 107 124-241 122-228 (343)
459 PTZ00088 adenylate kinase 1; P 94.5 0.037 8E-07 55.6 3.9 21 127-147 9-29 (229)
460 TIGR03771 anch_rpt_ABC anchore 94.5 0.48 1E-05 47.7 12.1 25 123-147 5-29 (223)
461 KOG3347 Predicted nucleotide k 94.5 0.051 1.1E-06 48.8 4.3 70 124-203 7-76 (176)
462 cd00984 DnaB_C DnaB helicase C 94.4 0.22 4.8E-06 50.9 9.8 54 123-179 12-65 (242)
463 PRK13650 cbiO cobalt transport 94.4 0.34 7.4E-06 50.7 11.2 25 123-147 32-56 (279)
464 PF08433 KTI12: Chromatin asso 94.4 0.025 5.4E-07 58.3 2.6 23 125-147 2-24 (270)
465 PF00560 LRR_1: Leucine Rich R 94.4 0.022 4.8E-07 33.4 1.3 22 509-538 1-22 (22)
466 PRK11823 DNA repair protein Ra 94.4 0.23 4.9E-06 55.5 10.3 40 123-164 79-118 (446)
467 KOG0739 AAA+-type ATPase [Post 94.4 1.1 2.5E-05 45.3 13.8 97 96-213 132-235 (439)
468 TIGR02868 CydC thiol reductant 94.4 0.4 8.6E-06 55.5 12.8 24 123-146 360-383 (529)
469 PRK10875 recD exonuclease V su 94.4 0.22 4.7E-06 57.6 10.4 119 124-245 167-304 (615)
470 PF01078 Mg_chelatase: Magnesi 94.4 0.061 1.3E-06 52.3 5.0 43 96-146 2-44 (206)
471 TIGR02329 propionate_PrpR prop 94.4 0.14 3E-06 58.3 8.6 133 97-243 212-358 (526)
472 TIGR03880 KaiC_arch_3 KaiC dom 94.4 0.32 6.9E-06 49.1 10.6 48 123-174 15-62 (224)
473 cd03236 ABC_RNaseL_inhibitor_d 94.4 0.51 1.1E-05 48.5 12.1 25 123-147 25-49 (255)
474 cd03289 ABCC_CFTR2 The CFTR su 94.4 0.7 1.5E-05 48.1 13.3 25 123-147 29-53 (275)
475 PRK00131 aroK shikimate kinase 94.4 0.031 6.8E-07 53.9 3.1 25 123-147 3-27 (175)
476 PRK10418 nikD nickel transport 94.4 0.62 1.3E-05 48.0 12.9 25 123-147 28-52 (254)
477 PF06309 Torsin: Torsin; Inte 94.4 0.065 1.4E-06 47.4 4.6 48 97-147 25-76 (127)
478 PRK09580 sufC cysteine desulfu 94.4 0.53 1.1E-05 48.3 12.3 25 123-147 26-50 (248)
479 KOG1947 Leucine rich repeat pr 94.4 0.0072 1.6E-07 69.2 -1.7 244 504-829 184-443 (482)
480 TIGR00764 lon_rel lon-related 94.3 0.092 2E-06 61.0 7.2 75 96-181 17-92 (608)
481 KOG1970 Checkpoint RAD17-RFC c 94.3 0.26 5.7E-06 54.1 10.0 44 102-146 87-132 (634)
482 COG2274 SunT ABC-type bacterio 94.3 0.42 9E-06 56.3 12.6 52 195-246 619-672 (709)
483 PRK15177 Vi polysaccharide exp 94.3 0.46 1E-05 47.4 11.4 25 123-147 12-36 (213)
484 KOG0743 AAA+-type ATPase [Post 94.3 0.81 1.7E-05 49.4 13.4 24 124-147 235-258 (457)
485 cd01134 V_A-ATPase_A V/A-type 94.3 0.34 7.4E-06 51.1 10.5 60 108-176 146-206 (369)
486 TIGR01313 therm_gnt_kin carboh 94.3 0.22 4.7E-06 47.4 8.7 21 127-147 1-21 (163)
487 COG4133 CcmA ABC-type transpor 94.3 0.78 1.7E-05 43.5 11.6 22 125-146 29-50 (209)
488 PRK10416 signal recognition pa 94.2 0.26 5.6E-06 52.3 9.8 25 123-147 113-137 (318)
489 COG1428 Deoxynucleoside kinase 94.2 0.037 8E-07 53.3 3.1 24 124-147 4-27 (216)
490 PRK13545 tagH teichoic acids e 94.2 0.64 1.4E-05 52.2 13.2 25 123-147 49-73 (549)
491 cd03300 ABC_PotA_N PotA is an 94.2 0.4 8.7E-06 48.6 11.0 25 123-147 25-49 (232)
492 cd02024 NRK1 Nicotinamide ribo 94.2 0.03 6.5E-07 54.1 2.6 22 126-147 1-22 (187)
493 PRK15424 propionate catabolism 94.2 0.15 3.2E-06 58.0 8.5 47 97-147 219-265 (538)
494 TIGR03574 selen_PSTK L-seryl-t 94.2 0.24 5.1E-06 50.9 9.3 22 126-147 1-22 (249)
495 cd02023 UMPK Uridine monophosp 94.2 0.03 6.6E-07 55.3 2.6 22 126-147 1-22 (198)
496 PF06414 Zeta_toxin: Zeta toxi 94.2 0.17 3.7E-06 49.9 7.9 105 121-231 12-119 (199)
497 cd00227 CPT Chloramphenicol (C 94.2 0.035 7.7E-07 53.6 3.0 23 125-147 3-25 (175)
498 TIGR02322 phosphon_PhnN phosph 94.2 0.037 8.1E-07 53.6 3.1 23 125-147 2-24 (179)
499 TIGR01818 ntrC nitrogen regula 94.2 0.34 7.5E-06 55.0 11.5 135 97-243 134-279 (463)
500 TIGR01359 UMP_CMP_kin_fam UMP- 94.2 0.031 6.8E-07 54.4 2.6 21 126-146 1-21 (183)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-84 Score=751.53 Aligned_cols=759 Identities=25% Similarity=0.378 Sum_probs=557.5
Q ss_pred CchhhhhhhhhHHHHhhcccCCCCCCCCCCcccccCCccccCCcchhhHHHHHHHHHHHHHHHHHHHHhcccCCcccccC
Q 003037 1 MEDVLDEWNTARLKLLIEGVDENALAPKTPVCSFFPLASCSGFEQIFLRRDIAKKIKEMNENLDEIARQKDMFSLSVIRS 80 (854)
Q Consensus 1 ~ed~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~i~~~~~~~~~~~~~~ 80 (854)
|||+++.|..+..+.+....-.. +..... ..|.| .+++..+..+..+.+++.++.+....+..+....
T Consensus 71 ~e~~~~~~~v~~~~~~~~~~l~~----~~~~~~----~~c~~----~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~ 138 (889)
T KOG4658|consen 71 AEDIIWLFLVEEIERKANDLLST----RSVERQ----RLCLC----GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFE 138 (889)
T ss_pred HHHHHHHHHHHHHHHHHhHHhhh----hHHHHH----HHhhh----hhHhHhhhhhHhHHHHHHHHHHHHHHhcccccee
Confidence 57888999888887654332100 000111 11221 4556666666666677666666666655433211
Q ss_pred -C---ccccccCCccccccCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccc-cccccC
Q 003037 81 -N---EEKSERIPSTSLIDVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNND-VINHFE 155 (854)
Q Consensus 81 -~---~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~f~ 155 (854)
. ..+...++..+...... ||.++.++++.+.|... +..+++|+||||+||||||++++|+.. ++.+|+
T Consensus 139 ~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d------~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd 211 (889)
T KOG4658|consen 139 VVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMED------DVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFD 211 (889)
T ss_pred cccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccC------CCCEEEEECCCcccHHHHHHHHhcccchhcccCc
Confidence 1 11122333444444444 99999999999999854 348999999999999999999999977 999999
Q ss_pred eeEEEEeCCccCHHHHHHHHHHHhcCCCCC--CccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCC
Q 003037 156 KRIWVCVSDPFDEFRIAKAIIEALEGSTPS--LGELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRG 233 (854)
Q Consensus 156 ~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 233 (854)
.++||+||+.++...++.+|++.++..... ....+.++..+.+.|++|||+||+||||+. .+|+.+..++|....|
T Consensus 212 ~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g 289 (889)
T KOG4658|consen 212 GVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENG 289 (889)
T ss_pred eEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCC
Confidence 999999999999999999999998874332 233478899999999999999999999986 4699999999999899
Q ss_pred cEEEEecccHHHHhh-ccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHHHhhhcc
Q 003037 234 SKILVTTRKMTVAQM-MQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTIGSLLRF 312 (854)
Q Consensus 234 s~ilvTtR~~~v~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~l~~ 312 (854)
|+|++|||+..|+.. +.....++++.|+.+|||+||++.++.... ...+.++++|++|+++|+|+|||++++|+.|+.
T Consensus 290 ~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~ 368 (889)
T KOG4658|consen 290 SKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLAC 368 (889)
T ss_pred eEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcC
Confidence 999999999999998 777889999999999999999999986533 344459999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhhcCC----ccccccCccchhhcccCCChHHHHHHHhhhhcCCCCceechHHHHHHHHHhCcccCC-C
Q 003037 313 KRSSREWQSILDSEIGQ----LEEFERGLLPPLLLSYNDMPSVIKWSFSYCAIFPKDYNIEKDELIKLWLAQGYIRPK-E 387 (854)
Q Consensus 313 ~~~~~~w~~~~~~~~~~----~~~~~~~v~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~Wia~g~i~~~-~ 387 (854)
+.+..+|+.+.+...+. ..+..+.++++|++||+.||+++|.||+|||+||+||.|+++.|+.+|+||||+.+. .
T Consensus 369 K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~ 448 (889)
T KOG4658|consen 369 KKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDG 448 (889)
T ss_pred CCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCcccc
Confidence 99999999999876554 334457899999999999999999999999999999999999999999999999984 4
Q ss_pred CchHHHHHHHHHHHHHhccccccccccCCCCeEeEEEechhHHHHHHHhhc-----cceEEeecC-CCccccccCccCce
Q 003037 388 NKELEMIVEEYFDYLAARSFFQEFEREHTEGLVVRCKMHDIVHDFAQYLTK-----NECLSIEAN-GHPLSLINNSVEKV 461 (854)
Q Consensus 388 ~~~~e~~~~~~l~~L~~~sli~~~~~~~~~~~~~~~~mHdlv~~~a~~~~~-----~e~~~~~~~-~~~~~~~~~~~~~~ 461 (854)
+.+++++|++|+++|++++|++..... ++.. +|+|||+||++|.++++ .+...+..+ +.........+..+
T Consensus 449 ~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~-~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~ 525 (889)
T KOG4658|consen 449 GETAEDVGYDYIEELVRASLLIEERDE--GRKE-TVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSV 525 (889)
T ss_pred ccchhcchHHHHHHHHHHHHHhhcccc--ccee-EEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhhe
Confidence 688999999999999999999987654 3444 79999999999999999 565444433 22222223346789
Q ss_pred EEEEeeeCCCCCCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccccCCC
Q 003037 462 RHSMLKLGYDSFPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHL 541 (854)
Q Consensus 462 r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L 541 (854)
|++++.++.......-..+++|++|.+..+.. .+......+|..++.||+|||++|.. +.++|+.|++|.||
T Consensus 526 rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~-~l~~is~~ff~~m~~LrVLDLs~~~~-------l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 526 RRMSLMNNKIEHIAGSSENPKLRTLLLQRNSD-WLLEISGEFFRSLPLLRVLDLSGNSS-------LSKLPSSIGELVHL 597 (889)
T ss_pred eEEEEeccchhhccCCCCCCccceEEEeecch-hhhhcCHHHHhhCcceEEEECCCCCc-------cCcCChHHhhhhhh
Confidence 99999999887666666777999999999853 13333566789999999999999875 89999999999999
Q ss_pred ceeeecCCCCcccchhhhcCCCCcEEeecCcccccccccccccCCCCcccCceeec-CCCCCCcccccccccCCceeEEe
Q 003037 542 RFLKLVWLDIEELPETCCELFNVQTLEVLDCRSFRRLPQGFGKLVNLRNLSKFIVS-RSGGSKLEDLRQLKHLRGSLKIQ 620 (854)
Q Consensus 542 ~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~-~~~~~~l~~L~~L~~L~~~L~i~ 620 (854)
|||+++++.|+.+|.++++|..|++|++..+..+..+|..+..|++||+|..+... ..+...+.++.+|++|. .+.+.
T Consensus 598 ryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~-~ls~~ 676 (889)
T KOG4658|consen 598 RYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLE-NLSIT 676 (889)
T ss_pred hcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchh-hheee
Confidence 99999999999999999999999999999988777777666779999999776654 33345566666666665 44443
Q ss_pred cccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCchhh-----c-
Q 003037 621 GLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWIV-----S- 694 (854)
Q Consensus 621 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~-----~- 694 (854)
.. +. .....+..+..|.++...-.... .........+..+.+|+.|.+ .++........|.. .
T Consensus 677 ~~----s~--~~~e~l~~~~~L~~~~~~l~~~~----~~~~~~~~~~~~l~~L~~L~i-~~~~~~e~~~~~~~~~~~~~~ 745 (889)
T KOG4658|consen 677 IS----SV--LLLEDLLGMTRLRSLLQSLSIEG----CSKRTLISSLGSLGNLEELSI-LDCGISEIVIEWEESLIVLLC 745 (889)
T ss_pred cc----hh--HhHhhhhhhHHHHHHhHhhhhcc----cccceeecccccccCcceEEE-EcCCCchhhcccccccchhhh
Confidence 21 11 11111222333332221111000 012333455667788888888 66655431122221 2
Q ss_pred ccCccEEEEecccCCCCCCCCCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCCCcccee-ecccccc
Q 003037 695 LNKLKKLVLYQFYLCDTMPPLGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLKQV-LFYNICH 773 (854)
Q Consensus 695 l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L-~l~~~~~ 773 (854)
++++.++.+.+|.....+-+....|+|+.|.+..|..++.+....-.... ....+..|.++..+ .+.+.+.
T Consensus 746 f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~--------l~~~i~~f~~~~~l~~~~~l~~ 817 (889)
T KOG4658|consen 746 FPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLE--------LKELILPFNKLEGLRMLCSLGG 817 (889)
T ss_pred HHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhh--------cccEEecccccccceeeecCCC
Confidence 55667777777766665555556788999999888766554332110000 00012345666666 4555555
Q ss_pred ccccccCCCccccCCCccceeeecccccCcCCCcCCCCCCCcCEEEEecC
Q 003037 774 WEEWDFGKGDSITIMPQLKKLEFERCTELKSVPEKLLRSTTLEELSIVEC 823 (854)
Q Consensus 774 l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 823 (854)
+..+....- .+++|+.+.+..||+++.+| .+.++.+.+|
T Consensus 818 l~~i~~~~l----~~~~l~~~~ve~~p~l~~~P-------~~~~~~i~~~ 856 (889)
T KOG4658|consen 818 LPQLYWLPL----SFLKLEELIVEECPKLGKLP-------LLSTLTIVGC 856 (889)
T ss_pred CceeEeccc----CccchhheehhcCcccccCc-------cccccceecc
Confidence 444432221 35668888888888877766 5666777776
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=8.9e-63 Score=607.04 Aligned_cols=685 Identities=20% Similarity=0.272 Sum_probs=455.1
Q ss_pred HHHHHHHHHHHHHHHHhcccCCcccccC--------CccccccCCccccccCCccccchhHHHHHHHHhcccccccCCCe
Q 003037 53 AKKIKEMNENLDEIARQKDMFSLSVIRS--------NEEKSERIPSTSLIDVSEVRGRDEEKNTLKSKLLCESSEQQNAV 124 (854)
Q Consensus 53 ~~~i~~~~~~l~~i~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~ 124 (854)
..+++++++.|.+++.... +....... ..........++..+.+++|||+++++++..+|.... ++.
T Consensus 133 ~~~~~~w~~al~~~~~~~g-~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~----~~~ 207 (1153)
T PLN03210 133 EDEKIQWKQALTDVANILG-YHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLES----EEV 207 (1153)
T ss_pred hhHHHHHHHHHHHHhCcCc-eecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHcccc----Cce
Confidence 3568888888888877532 22221110 1112222333444567789999999999999886433 478
Q ss_pred EEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEe---CCc-----------cC-HHHHHHHHHHHhcCCCC-CCcc
Q 003037 125 QVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCV---SDP-----------FD-EFRIAKAIIEALEGSTP-SLGE 188 (854)
Q Consensus 125 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---s~~-----------~~-~~~~~~~i~~~l~~~~~-~~~~ 188 (854)
++|+|+||||+||||||+++|+ ++..+|++.+|+.. +.. +. ...+..+++..+..... ....
T Consensus 208 ~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~ 285 (1153)
T PLN03210 208 RMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYH 285 (1153)
T ss_pred EEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCC
Confidence 9999999999999999999999 47788998888742 111 01 12344555555433211 1111
Q ss_pred HHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccHHHHhhccCcceEecCCCCHHHHHHH
Q 003037 189 LNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKMTVAQMMQSNDVILIRELSEQACWSL 268 (854)
Q Consensus 189 ~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l~~L~~~e~~~l 268 (854)
...+++.++++|+||||||||+ ...|+.+.....+.++||+||||||+..++..+....+|+++.|+.++||+|
T Consensus 286 ----~~~~~~~L~~krvLLVLDdv~~--~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~L 359 (1153)
T PLN03210 286 ----LGAMEERLKHRKVLIFIDDLDD--QDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEM 359 (1153)
T ss_pred ----HHHHHHHHhCCeEEEEEeCCCC--HHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHH
Confidence 2456778899999999999975 4688888877777789999999999999998777778999999999999999
Q ss_pred HHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHHHhhhccCCCHHHHHHHHhhhcCCccccccCccchhhcccCCC
Q 003037 269 FEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTIGSLLRFKRSSREWQSILDSEIGQLEEFERGLLPPLLLSYNDM 348 (854)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~v~~~l~~sy~~L 348 (854)
|+++||+.. ..+..+.+++++|+++|+|+|||++++|+.|+.+ +.++|+.++++....+ ...+.++|++||+.|
T Consensus 360 F~~~Af~~~--~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~~---~~~I~~~L~~SYd~L 433 (1153)
T PLN03210 360 FCRSAFKKN--SPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRNGL---DGKIEKTLRVSYDGL 433 (1153)
T ss_pred HHHHhcCCC--CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHhCc---cHHHHHHHHHhhhcc
Confidence 999999653 3456789999999999999999999999999875 7899999998865543 245899999999999
Q ss_pred hH-HHHHHHhhhhcCCCCceechHHHHHHHHHhCcccCCCCchHHHHHHHHHHHHHhccccccccccCCCCeEeEEEech
Q 003037 349 PS-VIKWSFSYCAIFPKDYNIEKDELIKLWLAQGYIRPKENKELEMIVEEYFDYLAARSFFQEFEREHTEGLVVRCKMHD 427 (854)
Q Consensus 349 ~~-~~k~cf~~~s~fp~~~~i~~~~li~~Wia~g~i~~~~~~~~e~~~~~~l~~L~~~sli~~~~~~~~~~~~~~~~mHd 427 (854)
++ ..|.||+++|+||.+..++ .+..|++.+... ++..++.|+++|||+.... +++|||
T Consensus 434 ~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~----------~~~~l~~L~~ksLi~~~~~--------~~~MHd 492 (1153)
T PLN03210 434 NNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLD----------VNIGLKNLVDKSLIHVRED--------IVEMHS 492 (1153)
T ss_pred CccchhhhhheehhhcCCCCHH---HHHHHHHhcCCC----------chhChHHHHhcCCEEEcCC--------eEEhhh
Confidence 87 5999999999999887554 477788876543 2234889999999987431 589999
Q ss_pred hHHHHHHHhhccce-------EEeecCCCcc-ccccCccCceEEEEeeeCCCC----CCcccccCCC-------------
Q 003037 428 IVHDFAQYLTKNEC-------LSIEANGHPL-SLINNSVEKVRHSMLKLGYDS----FPDSIFSAKK------------- 482 (854)
Q Consensus 428 lv~~~a~~~~~~e~-------~~~~~~~~~~-~~~~~~~~~~r~l~l~~~~~~----~~~~~~~~~~------------- 482 (854)
++|++|++++.++. +.....+... ........+++.+++...... ....|..+.+
T Consensus 493 Ll~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~ 572 (1153)
T PLN03210 493 LLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQ 572 (1153)
T ss_pred HHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccc
Confidence 99999999986653 1111100000 000111234444443322211 1112333334
Q ss_pred ------------------ceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccccCCCcee
Q 003037 483 ------------------LRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFL 544 (854)
Q Consensus 483 ------------------Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L 544 (854)
||.|.+.++. +.. +|..| .+.+|+.|++.++. +..+|..+..+.+|++|
T Consensus 573 ~~~~~~~lp~~~~~lp~~Lr~L~~~~~~---l~~-lP~~f-~~~~L~~L~L~~s~--------l~~L~~~~~~l~~Lk~L 639 (1153)
T PLN03210 573 KKEVRWHLPEGFDYLPPKLRLLRWDKYP---LRC-MPSNF-RPENLVKLQMQGSK--------LEKLWDGVHSLTGLRNI 639 (1153)
T ss_pred cccceeecCcchhhcCcccEEEEecCCC---CCC-CCCcC-CccCCcEEECcCcc--------ccccccccccCCCCCEE
Confidence 4555444443 222 34433 45677777777777 77777777888888888
Q ss_pred eecCCC-CcccchhhhcCCCCcEEeecCcccccccccccccCCCCcccCceeecCCCCCCcccccccccCCceeEEeccc
Q 003037 545 KLVWLD-IEELPETCCELFNVQTLEVLDCRSFRRLPQGFGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLG 623 (854)
Q Consensus 545 ~L~~~~-i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~ 623 (854)
+|+++. +..+| .++.+++|++|++++|..+..+|..+++|++|++|......... .+..-.++++|+ .|.+.++.
T Consensus 640 ~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~--~Lp~~i~l~sL~-~L~Lsgc~ 715 (1153)
T PLN03210 640 DLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE--ILPTGINLKSLY-RLNLSGCS 715 (1153)
T ss_pred ECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC--ccCCcCCCCCCC-EEeCCCCC
Confidence 888765 66676 47778888888888887778888888888888777443221111 011101233333 44444433
Q ss_pred CCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCc--------------chHHHhh--------hCCCCCCCCeEEEecc
Q 003037 624 NVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDV--------------NDKAIIE--------ALQPPPNIESLRIEYH 681 (854)
Q Consensus 624 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--------------~~~~~~~--------~l~~~~~L~~L~l~~~ 681 (854)
.+.... ....+|+.|+++.+.....+.. ....+.. ....+++|+.|++ .+
T Consensus 716 ~L~~~p-------~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~L-s~ 787 (1153)
T PLN03210 716 RLKSFP-------DISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFL-SD 787 (1153)
T ss_pred Cccccc-------cccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeC-CC
Confidence 222111 0123444555544411000000 0000000 0112457778888 55
Q ss_pred CCCCCCCCchhhcccCccEEEEecccCCCCCCCCCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCCC
Q 003037 682 YIGISGWPSWIVSLNKLKKLVLYQFYLCDTMPPLGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFP 761 (854)
Q Consensus 682 ~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~ 761 (854)
+.....+|.+++.+++|+.|+|++|...+.+|....+++|+.|+|++|..+..+|. ..+
T Consensus 788 n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~---------------------~~~ 846 (1153)
T PLN03210 788 IPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD---------------------IST 846 (1153)
T ss_pred CCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc---------------------ccc
Confidence 55444478777788888888888887777777655778888888888776655543 235
Q ss_pred ccceeeccccccccccccCCCccccCCCccceeeecccccCcCCCcCCCCCCCcCEEEEecCcchHH
Q 003037 762 KLKQVLFYNICHWEEWDFGKGDSITIMPQLKKLEFERCTELKSVPEKLLRSTTLEELSIVECPILVE 828 (854)
Q Consensus 762 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~ 828 (854)
+|+.|++.+ +.++.++. .+..+++|+.|++++|+++..+|..+..+++|+.+++++|++|..
T Consensus 847 nL~~L~Ls~-n~i~~iP~----si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 847 NISDLNLSR-TGIEEVPW----WIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred ccCEeECCC-CCCccChH----HHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence 677777766 34444443 345788888888888888888888888888888888888887754
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.4e-44 Score=383.27 Aligned_cols=278 Identities=37% Similarity=0.607 Sum_probs=226.1
Q ss_pred chhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcC
Q 003037 102 RDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEG 181 (854)
Q Consensus 102 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 181 (854)
||.++++|.++|.... .+.++|+|+||||+||||||++++++..++.+|+.++|+.++...+...++..|+++++.
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998644 379999999999999999999999976788999999999999999999999999999987
Q ss_pred CCC---CCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccHHHHhhccC-cceEec
Q 003037 182 STP---SLGELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKMTVAQMMQS-NDVILI 257 (854)
Q Consensus 182 ~~~---~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~-~~~~~l 257 (854)
... ...+.+.....+.+.++++++||||||||+. ..|+.+...++....|++||||||+..++..+.. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 733 4567888999999999999999999999864 5888888888887789999999999988877655 679999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHHHhhhccCCCHHHHHHHHhhhcCCcc---ccc
Q 003037 258 RELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTIGSLLRFKRSSREWQSILDSEIGQLE---EFE 334 (854)
Q Consensus 258 ~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~---~~~ 334 (854)
++|+.+||++||++.++... ....+.+++.+++|+++|+|+||||+++|++|+.+.+..+|+.+++....... +..
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999987544 12345556789999999999999999999999776677889998876554442 234
Q ss_pred cCccchhhcccCCChHHHHHHHhhhhcCCCCceechHHHHHHHHHhCcccCC
Q 003037 335 RGLLPPLLLSYNDMPSVIKWSFSYCAIFPKDYNIEKDELIKLWLAQGYIRPK 386 (854)
Q Consensus 335 ~~v~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~Wia~g~i~~~ 386 (854)
..+..++.+||+.||++.|+||+|||+||+++.|+++.|+++|+++|||...
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 6689999999999999999999999999999999999999999999999764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.89 E-value=6.8e-23 Score=254.11 Aligned_cols=290 Identities=20% Similarity=0.200 Sum_probs=171.8
Q ss_pred cCceEEEEeeeCCCCCCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccc
Q 003037 458 VEKVRHSMLKLGYDSFPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKK 537 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~ 537 (854)
..++|++.+.++..........+++|++|.+.+|. +.+.+|..++++++|++|+|++|.. ...+|..+++
T Consensus 117 l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~---~~~~~p~~~~~l~~L~~L~L~~n~l-------~~~~p~~~~~ 186 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNM---LSGEIPNDIGSFSSLKVLDLGGNVL-------VGKIPNSLTN 186 (968)
T ss_pred CCCCCEEECcCCccccccCccccCCCCEEECcCCc---ccccCChHHhcCCCCCEEECccCcc-------cccCChhhhh
Confidence 45666666666654322222346677777777766 4444666677777777777777762 3456777777
Q ss_pred cCCCceeeecCCCCc-ccchhhhcCCCCcEEeecCcccccccccccccCCCCcccCceeecCCCCCCcccccccccCCce
Q 003037 538 LIHLRFLKLVWLDIE-ELPETCCELFNVQTLEVLDCRSFRRLPQGFGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGS 616 (854)
Q Consensus 538 L~~L~~L~L~~~~i~-~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~ 616 (854)
+.+|++|+|++|.+. .+|..++++++|++|++++|.....+|..++++++|++|........ +.....+.++++|+ .
T Consensus 187 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~-~ 264 (968)
T PLN00113 187 LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT-GPIPSSLGNLKNLQ-Y 264 (968)
T ss_pred CcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceec-cccChhHhCCCCCC-E
Confidence 777777777777765 56777777777777777777744567777777777777743322111 11122233344444 4
Q ss_pred eEEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCchhhccc
Q 003037 617 LKIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWIVSLN 696 (854)
Q Consensus 617 L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~ 696 (854)
|.+... ......+..+.++++|+.|++++|. ....+++.+..+++|+.|++ .++.....+|.++..++
T Consensus 265 L~L~~n----~l~~~~p~~l~~l~~L~~L~Ls~n~-------l~~~~p~~~~~l~~L~~L~l-~~n~~~~~~~~~~~~l~ 332 (968)
T PLN00113 265 LFLYQN----KLSGPIPPSIFSLQKLISLDLSDNS-------LSGEIPELVIQLQNLEILHL-FSNNFTGKIPVALTSLP 332 (968)
T ss_pred EECcCC----eeeccCchhHhhccCcCEEECcCCe-------eccCCChhHcCCCCCcEEEC-CCCccCCcCChhHhcCC
Confidence 444431 1122233455667777777777661 22234455666777888888 55544444677777788
Q ss_pred CccEEEEecccCCCCCCC-CCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccC------CccccCCCccceeecc
Q 003037 697 KLKKLVLYQFYLCDTMPP-LGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGIST------SSSVIAFPKLKQVLFY 769 (854)
Q Consensus 697 ~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~------~~~~~~~~~L~~L~l~ 769 (854)
+|+.|+|++|.+.+.+|. ++.+++|+.|++++|.....+|..+.....+..+....+ +.....+++|+.|.+.
T Consensus 333 ~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~ 412 (968)
T PLN00113 333 RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQ 412 (968)
T ss_pred CCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECc
Confidence 888888887777666664 777788888888777644455544433222222211111 1123345666666666
Q ss_pred cc
Q 003037 770 NI 771 (854)
Q Consensus 770 ~~ 771 (854)
++
T Consensus 413 ~n 414 (968)
T PLN00113 413 DN 414 (968)
T ss_pred CC
Confidence 54
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=2.7e-25 Score=233.76 Aligned_cols=322 Identities=20% Similarity=0.201 Sum_probs=248.8
Q ss_pred cCceEEEEeeeCCCC-CCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccccccccc
Q 003037 458 VEKVRHSMLKLGYDS-FPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIK 536 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~ 536 (854)
..++.|+++.++... +...+..++.||++.+..|+.. -.+ +|..+.++.-|.+|||++|+ +.+.|..+.
T Consensus 54 lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LK-nsG-iP~diF~l~dLt~lDLShNq--------L~EvP~~LE 123 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLK-NSG-IPTDIFRLKDLTILDLSHNQ--------LREVPTNLE 123 (1255)
T ss_pred HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccc-cCC-CCchhcccccceeeecchhh--------hhhcchhhh
Confidence 457888888887754 6677888999999999988743 234 56668899999999999999 999999999
Q ss_pred ccCCCceeeecCCCCcccchh-hhcCCCCcEEeecCcccccccccccccCCCCcccCceeecCCCCCCcccccccccCCc
Q 003037 537 KLIHLRFLKLVWLDIEELPET-CCELFNVQTLEVLDCRSFRRLPQGFGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRG 615 (854)
Q Consensus 537 ~L~~L~~L~L~~~~i~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~ 615 (854)
+-+++-+|+||+|+|..+|.+ +.+|+.|-+|||++|+ +..+|+.+.+|.+|+.|.... +......+.+|+.++.|
T Consensus 124 ~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~-NPL~hfQLrQLPsmtsL-- 199 (1255)
T KOG0444|consen 124 YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSN-NPLNHFQLRQLPSMTSL-- 199 (1255)
T ss_pred hhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCC-ChhhHHHHhcCccchhh--
Confidence 999999999999999999976 4689999999999999 999999999999999994321 11112344555555544
Q ss_pred eeEEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCchhhcc
Q 003037 616 SLKIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWIVSL 695 (854)
Q Consensus 616 ~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l 695 (854)
++..+.+........+.++..+.+|..++++.| +...+++.+-.+++|++|+| +++.... +......-
T Consensus 200 --~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N--------~Lp~vPecly~l~~LrrLNL-S~N~ite-L~~~~~~W 267 (1255)
T KOG0444|consen 200 --SVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN--------NLPIVPECLYKLRNLRRLNL-SGNKITE-LNMTEGEW 267 (1255)
T ss_pred --hhhhcccccchhhcCCCchhhhhhhhhcccccc--------CCCcchHHHhhhhhhheecc-CcCceee-eeccHHHH
Confidence 343444434444555667788889999999987 56678888889999999999 6665544 55555667
Q ss_pred cCccEEEEecccCCCCCCCCCCCCCCCEEEEcCCCC-ceEeCccccCCCCCCCCccccCCccccCCCccceeeccccccc
Q 003037 696 NKLKKLVLYQFYLCDTMPPLGKLPSLEILEIRGNWN-VKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLKQVLFYNICHW 774 (854)
Q Consensus 696 ~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~-l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l 774 (854)
.+|+.|+||.|++...+..+.+|+.|+.|.+.+|+. .+-||. .++.+.+|+.+...+ +.|
T Consensus 268 ~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPS------------------GIGKL~~Levf~aan-N~L 328 (1255)
T KOG0444|consen 268 ENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPS------------------GIGKLIQLEVFHAAN-NKL 328 (1255)
T ss_pred hhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCcc------------------chhhhhhhHHHHhhc-ccc
Confidence 889999999997655444488899999999988761 112222 255677888887776 455
Q ss_pred cccccCCCccccCCCccceeeecccccCcCCCcCCCCCCCcCEEEEecCcchHHh
Q 003037 775 EEWDFGKGDSITIMPQLKKLEFERCTELKSVPEKLLRSTTLEELSIVECPILVER 829 (854)
Q Consensus 775 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~~ 829 (854)
+-++. .+..++.|++|.+..| .|-.+|+++.-|+.|+.|++.++|+|...
T Consensus 329 ElVPE----glcRC~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 329 ELVPE----GLCRCVKLQKLKLDHN-RLITLPEAIHLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred ccCch----hhhhhHHHHHhccccc-ceeechhhhhhcCCcceeeccCCcCccCC
Confidence 55554 4557999999999866 78889999999999999999999998654
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=4.6e-22 Score=246.70 Aligned_cols=335 Identities=18% Similarity=0.210 Sum_probs=186.8
Q ss_pred ceEEEEeeeCCCC--CCcccc-cCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccccccccc
Q 003037 460 KVRHSMLKLGYDS--FPDSIF-SAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIK 536 (854)
Q Consensus 460 ~~r~l~l~~~~~~--~~~~~~-~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~ 536 (854)
.++.+.+..+... +|..+. .+++||+|++.+|. +.+..|. ..+++|++|+|++|.. ...+|..++
T Consensus 94 ~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~---l~~~~p~--~~l~~L~~L~Ls~n~~-------~~~~p~~~~ 161 (968)
T PLN00113 94 YIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNN---FTGSIPR--GSIPNLETLDLSNNML-------SGEIPNDIG 161 (968)
T ss_pred CCCEEECCCCccCCcCChHHhccCCCCCEEECcCCc---cccccCc--cccCCCCEEECcCCcc-------cccCChHHh
Confidence 4444444444321 333322 44555555555444 2222221 3455555555555551 224666677
Q ss_pred ccCCCceeeecCCCCc-ccchhhhcCCCCcEEeecCcccccccccccccCCCCcccCceeecCCCCCCcccccccccCCc
Q 003037 537 KLIHLRFLKLVWLDIE-ELPETCCELFNVQTLEVLDCRSFRRLPQGFGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRG 615 (854)
Q Consensus 537 ~L~~L~~L~L~~~~i~-~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~ 615 (854)
++.+|++|+|++|.+. .+|.+++++++|++|++++|.....+|..++++++|++|........ +.....+.++.+|+
T Consensus 162 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~- 239 (968)
T PLN00113 162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS-GEIPYEIGGLTSLN- 239 (968)
T ss_pred cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC-CcCChhHhcCCCCC-
Confidence 7777777777777654 56666777777777777776644556666777777766633221111 11122233444444
Q ss_pred eeEEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCchhhcc
Q 003037 616 SLKIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWIVSL 695 (854)
Q Consensus 616 ~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l 695 (854)
.|.+.+. ......+..+.++++|+.|+++.+. ....++..+..+++|+.|++ +++.....+|.++..+
T Consensus 240 ~L~L~~n----~l~~~~p~~l~~l~~L~~L~L~~n~-------l~~~~p~~l~~l~~L~~L~L-s~n~l~~~~p~~~~~l 307 (968)
T PLN00113 240 HLDLVYN----NLTGPIPSSLGNLKNLQYLFLYQNK-------LSGPIPPSIFSLQKLISLDL-SDNSLSGEIPELVIQL 307 (968)
T ss_pred EEECcCc----eeccccChhHhCCCCCCEEECcCCe-------eeccCchhHhhccCcCEEEC-cCCeeccCCChhHcCC
Confidence 5544431 1222334456667777777777651 12233445556677888887 4544444477777777
Q ss_pred cCccEEEEecccCCCCCCC-CCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccC------CccccCCCccceeec
Q 003037 696 NKLKKLVLYQFYLCDTMPP-LGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGIST------SSSVIAFPKLKQVLF 768 (854)
Q Consensus 696 ~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~------~~~~~~~~~L~~L~l 768 (854)
++|+.|++++|.+.+.+|. ++.+++|+.|+|++|.....+|..+.....+..+....+ +.....+++|+.|.+
T Consensus 308 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l 387 (968)
T PLN00113 308 QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLIL 387 (968)
T ss_pred CCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEEC
Confidence 8888888887777665554 677788888888877644445543322222211111111 111223455555555
Q ss_pred cccccccccccCCCccccCCCccceeeecccccCcCCCcCCCCCCCcCEEEEecCc
Q 003037 769 YNICHWEEWDFGKGDSITIMPQLKKLEFERCTELKSVPEKLLRSTTLEELSIVECP 824 (854)
Q Consensus 769 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 824 (854)
.++.- ....+..+..+++|+.|++++|...+.+|..+..+++|+.|++++|.
T Consensus 388 ~~n~l----~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 439 (968)
T PLN00113 388 FSNSL----EGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN 439 (968)
T ss_pred cCCEe----cccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc
Confidence 55321 11122245568888888888887666788888888888888888774
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.80 E-value=1.3e-20 Score=197.70 Aligned_cols=321 Identities=19% Similarity=0.202 Sum_probs=182.3
Q ss_pred cCceEEEEeeeCCCC-CCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccc-cc
Q 003037 458 VEKVRHSMLKLGYDS-FPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPK-EI 535 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~-~i 535 (854)
..++..+.+..+... +|.-.....+|..|.+.+|. +..+-...++.++.||+|||+.|. |.++|. ++
T Consensus 101 l~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~---I~sv~se~L~~l~alrslDLSrN~--------is~i~~~sf 169 (873)
T KOG4194|consen 101 LPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNL---ISSVTSEELSALPALRSLDLSRNL--------ISEIPKPSF 169 (873)
T ss_pred CCcceeeeeccchhhhcccccccccceeEEeeeccc---cccccHHHHHhHhhhhhhhhhhch--------hhcccCCCC
Confidence 345566666666554 34333344557888887777 444444557778888888888887 777764 34
Q ss_pred cccCCCceeeecCCCCcccch-hhhcCCCCcEEeecCccccccccccc-ccCCCCcccCcee--ecCCCCCCcccccccc
Q 003037 536 KKLIHLRFLKLVWLDIEELPE-TCCELFNVQTLEVLDCRSFRRLPQGF-GKLVNLRNLSKFI--VSRSGGSKLEDLRQLK 611 (854)
Q Consensus 536 ~~L~~L~~L~L~~~~i~~lP~-~i~~L~~L~~L~l~~~~~l~~lp~~i-~~L~~L~~L~~~~--~~~~~~~~l~~L~~L~ 611 (854)
..-.++++|+|++|.|+.+-. .|..|.+|.+|.|++|+ +..+|... .+|++|+.|..-. +....+..+.+|+.|+
T Consensus 170 p~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~ 248 (873)
T KOG4194|consen 170 PAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQ 248 (873)
T ss_pred CCCCCceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhh
Confidence 555788888888888887653 56778888888888888 88888654 4477777773221 1122233444555555
Q ss_pred cCCceeEEecccCC------------------CChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCC
Q 003037 612 HLRGSLKIQGLGNV------------------RDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNI 673 (854)
Q Consensus 612 ~L~~~L~i~~l~~~------------------~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L 673 (854)
+|+ |.-+++..+ +.........+.+++.|+.|+++.|. ....-++++...++|
T Consensus 249 nlk--lqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na-------I~rih~d~WsftqkL 319 (873)
T KOG4194|consen 249 NLK--LQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA-------IQRIHIDSWSFTQKL 319 (873)
T ss_pred hhh--hhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhh-------hheeecchhhhcccc
Confidence 442 111111111 11222223344455555555555541 111123444455556
Q ss_pred CeEEEeccCCCCCCC-CchhhcccCccEEEEecccCCCCCC-CCCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccc
Q 003037 674 ESLRIEYHYIGISGW-PSWIVSLNKLKKLVLYQFYLCDTMP-PLGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGI 751 (854)
Q Consensus 674 ~~L~l~~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~ 751 (854)
+.|+| +++.... + +..+..+..|+.|.|+.|.....-. .+..+.+|+.|+|.+|.....|.+....
T Consensus 320 ~~LdL-s~N~i~~-l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~---------- 387 (873)
T KOG4194|consen 320 KELDL-SSNRITR-LDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVA---------- 387 (873)
T ss_pred eeEec-ccccccc-CChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhh----------
Confidence 66666 3333222 3 2334455556666666554322111 1444566666666666544444432111
Q ss_pred cCCccccCCCccceeeccccccccccccCCCccccCCCccceeeecccccCcCCCcCCCCCCCcCEEEEe
Q 003037 752 STSSSVIAFPKLKQVLFYNICHWEEWDFGKGDSITIMPQLKKLEFERCTELKSVPEKLLRSTTLEELSIV 821 (854)
Q Consensus 752 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~ 821 (854)
..++|+|+.|.+.+ ++++.++.. ++..+++|+.|++.+|+...--|..+..+ .|++|-+.
T Consensus 388 -----f~gl~~LrkL~l~g-Nqlk~I~kr---Afsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 388 -----FNGLPSLRKLRLTG-NQLKSIPKR---AFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred -----hccchhhhheeecC-ceeeecchh---hhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 23578888888877 455655532 45568888888888876444446677766 77777653
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.79 E-value=1.5e-18 Score=215.39 Aligned_cols=322 Identities=20% Similarity=0.230 Sum_probs=222.2
Q ss_pred cCceEEEEeeeCCCCCCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccc
Q 003037 458 VEKVRHSMLKLGYDSFPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKK 537 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~ 537 (854)
+.++|.+.+..+.....+....+.+|+.|.+.++. +.. ++..+..+++|++|+|+++.. +..+|. ++.
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~---l~~-L~~~~~~l~~Lk~L~Ls~~~~-------l~~ip~-ls~ 655 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSK---LEK-LWDGVHSLTGLRNIDLRGSKN-------LKEIPD-LSM 655 (1153)
T ss_pred CcccEEEEecCCCCCCCCCcCCccCCcEEECcCcc---ccc-cccccccCCCCCEEECCCCCC-------cCcCCc-ccc
Confidence 56788888887766533444468899999999887 444 566678899999999998864 677774 888
Q ss_pred cCCCceeeecCCC-CcccchhhhcCCCCcEEeecCcccccccccccccCCCCcccCceeecCCCC---------------
Q 003037 538 LIHLRFLKLVWLD-IEELPETCCELFNVQTLEVLDCRSFRRLPQGFGKLVNLRNLSKFIVSRSGG--------------- 601 (854)
Q Consensus 538 L~~L~~L~L~~~~-i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~--------------- 601 (854)
+++|++|+|++|. +..+|.++++|++|+.|++++|..++.+|.++ ++++|++|..........
T Consensus 656 l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~ 734 (1153)
T PLN03210 656 ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDE 734 (1153)
T ss_pred CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCC
Confidence 9999999999876 78899999999999999999998899999876 677777774322211000
Q ss_pred CCccccc---ccccCCceeEEecccCCC---ChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCe
Q 003037 602 SKLEDLR---QLKHLRGSLKIQGLGNVR---DADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIES 675 (854)
Q Consensus 602 ~~l~~L~---~L~~L~~~L~i~~l~~~~---~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 675 (854)
..+..++ .+.+|. .|.+..+.... ............+++|+.|+++.+ .....++..+..+++|+.
T Consensus 735 n~i~~lP~~~~l~~L~-~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n-------~~l~~lP~si~~L~~L~~ 806 (1153)
T PLN03210 735 TAIEEFPSNLRLENLD-ELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI-------PSLVELPSSIQNLHKLEH 806 (1153)
T ss_pred Cccccccccccccccc-cccccccchhhccccccccchhhhhccccchheeCCCC-------CCccccChhhhCCCCCCE
Confidence 0000000 011111 11111110000 000000011122457888888776 123446677888999999
Q ss_pred EEEeccCCCCCCCCchhhcccCccEEEEecccCCCCCCCCCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCCc
Q 003037 676 LRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCDTMPPLGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSS 755 (854)
Q Consensus 676 L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~ 755 (854)
|+| .+|.....+|..+ .+++|+.|+|++|.....+|.+ .++|+.|+|++|. ++.+|..
T Consensus 807 L~L-s~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~-i~~iP~s----------------- 864 (1153)
T PLN03210 807 LEI-ENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTG-IEEVPWW----------------- 864 (1153)
T ss_pred EEC-CCCCCcCeeCCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCCC-CccChHH-----------------
Confidence 999 7766555588765 6899999999999887776654 4789999999886 6667653
Q ss_pred cccCCCccceeeccccccccccccCCCccccCCCccceeeecccccCcCCCcCC-------------CCCCCcCEEEEec
Q 003037 756 SVIAFPKLKQVLFYNICHWEEWDFGKGDSITIMPQLKKLEFERCTELKSVPEKL-------------LRSTTLEELSIVE 822 (854)
Q Consensus 756 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l-------------~~l~~L~~L~l~~ 822 (854)
+..+++|+.|.+.+|+++..++.. +..+++|+.|++++|+.+..++..- ..++....+.+.+
T Consensus 865 -i~~l~~L~~L~L~~C~~L~~l~~~----~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~n 939 (1153)
T PLN03210 865 -IEKFSNLSFLDMNGCNNLQRVSLN----ISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFIN 939 (1153)
T ss_pred -HhcCCCCCEEECCCCCCcCccCcc----cccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhcccccc
Confidence 346899999999999999988763 3478999999999999888654210 1233445567788
Q ss_pred CcchH
Q 003037 823 CPILV 827 (854)
Q Consensus 823 c~~l~ 827 (854)
|.+|.
T Consensus 940 C~~L~ 944 (1153)
T PLN03210 940 CFNLD 944 (1153)
T ss_pred ccCCC
Confidence 87764
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.79 E-value=2.5e-21 Score=204.09 Aligned_cols=318 Identities=19% Similarity=0.205 Sum_probs=210.2
Q ss_pred cCceEEEEeeeCCCC-CCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccccccccc
Q 003037 458 VEKVRHSMLKLGYDS-FPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIK 536 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~ 536 (854)
...++++.+...... +|..+..+.+|..|.+..|. +.. +..-++.++.||.+++++|+.. ...+|..|.
T Consensus 31 Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~---L~~-vhGELs~Lp~LRsv~~R~N~LK------nsGiP~diF 100 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQ---LIS-VHGELSDLPRLRSVIVRDNNLK------NSGIPTDIF 100 (1255)
T ss_pred hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhh---hHh-hhhhhccchhhHHHhhhccccc------cCCCCchhc
Confidence 445777777766654 78888999999999998887 443 3444788899999999998821 245899999
Q ss_pred ccCCCceeeecCCCCcccchhhhcCCCCcEEeecCccccccccccc-ccCCCCcccCceeecCCC-CCCcccccccccCC
Q 003037 537 KLIHLRFLKLVWLDIEELPETCCELFNVQTLEVLDCRSFRRLPQGF-GKLVNLRNLSKFIVSRSG-GSKLEDLRQLKHLR 614 (854)
Q Consensus 537 ~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i-~~L~~L~~L~~~~~~~~~-~~~l~~L~~L~~L~ 614 (854)
.|..|..||||+|.+++.|..+..-+|+-+|+|++|+ +..+|..+ .+|+-|-.|......... ...+..|..|+
T Consensus 101 ~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~Lq--- 176 (1255)
T KOG0444|consen 101 RLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQ--- 176 (1255)
T ss_pred ccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhh---
Confidence 9999999999999999999999999999999999998 89999864 355555444221111100 11122223333
Q ss_pred ceeEEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCchhhc
Q 003037 615 GSLKIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWIVS 694 (854)
Q Consensus 615 ~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~ 694 (854)
+|.+++ +.+.......+..+++|+.|.+++.. .....++.++..+.||..+++ +.+.... +|..+-.
T Consensus 177 -tL~Ls~----NPL~hfQLrQLPsmtsL~vLhms~Tq------RTl~N~Ptsld~l~NL~dvDl-S~N~Lp~-vPecly~ 243 (1255)
T KOG0444|consen 177 -TLKLSN----NPLNHFQLRQLPSMTSLSVLHMSNTQ------RTLDNIPTSLDDLHNLRDVDL-SENNLPI-VPECLYK 243 (1255)
T ss_pred -hhhcCC----ChhhHHHHhcCccchhhhhhhccccc------chhhcCCCchhhhhhhhhccc-cccCCCc-chHHHhh
Confidence 333333 22223333344555566666666541 123344555555666777776 4443333 5666666
Q ss_pred ccCccEEEEecccCCCCCCCCCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCCCccceeeccccccc
Q 003037 695 LNKLKKLVLYQFYLCDTMPPLGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLKQVLFYNICHW 774 (854)
Q Consensus 695 l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l 774 (854)
+.+|++|+||+|.+.+.--..+...+|+.|+++.|. +..+|..++ .+++|+.|++.+
T Consensus 244 l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~avc------------------KL~kL~kLy~n~---- 300 (1255)
T KOG0444|consen 244 LRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-LTVLPDAVC------------------KLTKLTKLYANN---- 300 (1255)
T ss_pred hhhhheeccCcCceeeeeccHHHHhhhhhhccccch-hccchHHHh------------------hhHHHHHHHhcc----
Confidence 677777777776655433345556667777777665 555555433 678888888776
Q ss_pred ccccc-CCCccccCCCccceeeecccccCcCCCcCCCCCCCcCEEEEecCcch
Q 003037 775 EEWDF-GKGDSITIMPQLKKLEFERCTELKSVPEKLLRSTTLEELSIVECPIL 826 (854)
Q Consensus 775 ~~~~~-~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l 826 (854)
+++.+ +.+..++.+.+|+.+...+| +|+-+|+++..++.|+.|.++.+..+
T Consensus 301 NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~NrLi 352 (1255)
T KOG0444|consen 301 NKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNRLI 352 (1255)
T ss_pred CcccccCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhccccccee
Confidence 22221 22335668999999999877 79999999999999999999877543
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.77 E-value=6.8e-21 Score=191.53 Aligned_cols=317 Identities=20% Similarity=0.201 Sum_probs=188.9
Q ss_pred CceEEEEeeeCCCCCCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccccccccccc
Q 003037 459 EKVRHSMLKLGYDSFPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKL 538 (854)
Q Consensus 459 ~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L 538 (854)
+++..+.+..+.+.+.++|..|+.|..|++..|. +........+++.+|.+|||++|+ +.++|..+..|
T Consensus 206 ~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~---i~~lpae~~~~L~~l~vLDLRdNk--------lke~Pde~clL 274 (565)
T KOG0472|consen 206 ESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQ---IEMLPAEHLKHLNSLLVLDLRDNK--------LKEVPDEICLL 274 (565)
T ss_pred hhhHHHHhhhcccccCCCCCccHHHHHHHhcccH---HHhhHHHHhcccccceeeeccccc--------cccCchHHHHh
Confidence 3444555666666666677777777777777666 444223334577777777777777 77777777777
Q ss_pred CCCceeeecCCCCcccchhhhcCCCCcEEeecCcccccccccccccCCC---CcccCceee------cCCCC--------
Q 003037 539 IHLRFLKLVWLDIEELPETCCELFNVQTLEVLDCRSFRRLPQGFGKLVN---LRNLSKFIV------SRSGG-------- 601 (854)
Q Consensus 539 ~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~---L~~L~~~~~------~~~~~-------- 601 (854)
.+|.+||+++|.|+.+|.++++| +|..|-+.||+ ++++-.+|-+... |++|..... +..+.
T Consensus 275 rsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~ 352 (565)
T KOG0472|consen 275 RSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPS 352 (565)
T ss_pred hhhhhhcccCCccccCCcccccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCC
Confidence 77777777777777777777777 77777777777 6666555433221 333311111 00000
Q ss_pred CCcccccccccCCceeEEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCC-eEEEec
Q 003037 602 SKLEDLRQLKHLRGSLKIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIE-SLRIEY 680 (854)
Q Consensus 602 ~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~ 680 (854)
.....-..+.+.+ .|.+.+..-.....++..+ ..-.-....+++.| ...+++..+..+..+. .+.+ +
T Consensus 353 ~~~~~~~~~i~tk-iL~~s~~qlt~VPdEVfea--~~~~~Vt~VnfskN--------qL~elPk~L~~lkelvT~l~l-s 420 (565)
T KOG0472|consen 353 ESFPDIYAIITTK-ILDVSDKQLTLVPDEVFEA--AKSEIVTSVNFSKN--------QLCELPKRLVELKELVTDLVL-S 420 (565)
T ss_pred Ccccchhhhhhhh-hhcccccccccCCHHHHHH--hhhcceEEEecccc--------hHhhhhhhhHHHHHHHHHHHh-h
Confidence 0001111112122 2222221110011111111 01112334455544 3444555554443333 3334 4
Q ss_pred cCCCCCCCCchhhcccCccEEEEecccCCCCCCCCCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCC
Q 003037 681 HYIGISGWPSWIVSLNKLKKLVLYQFYLCDTMPPLGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAF 760 (854)
Q Consensus 681 ~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~ 760 (854)
++...- .|..++++++|..|+|++|.+.+.+-.++.+..|+.|+|+.|. .+.+|.-.+ ..
T Consensus 421 nn~isf-v~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~Nr-Fr~lP~~~y------------------~l 480 (565)
T KOG0472|consen 421 NNKISF-VPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNR-FRMLPECLY------------------EL 480 (565)
T ss_pred cCcccc-chHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccc-cccchHHHh------------------hH
Confidence 444333 5666889999999999998655433348899999999999986 666665433 23
Q ss_pred CccceeeccccccccccccCCCccccCCCccceeeecccccCcCCCcCCCCCCCcCEEEEecCcc
Q 003037 761 PKLKQVLFYNICHWEEWDFGKGDSITIMPQLKKLEFERCTELKSVPEKLLRSTTLEELSIVECPI 825 (854)
Q Consensus 761 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 825 (854)
..|+.+..++ .++..+. ++.+.+|.+|..|++.+| .+..+|..++++++|++|+++|+|-
T Consensus 481 q~lEtllas~-nqi~~vd---~~~l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 481 QTLETLLASN-NQIGSVD---PSGLKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred HHHHHHHhcc-ccccccC---hHHhhhhhhcceeccCCC-chhhCChhhccccceeEEEecCCcc
Confidence 3444444444 3444443 335678999999999988 7899999999999999999999984
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.74 E-value=3.2e-19 Score=187.47 Aligned_cols=312 Identities=21% Similarity=0.231 Sum_probs=190.7
Q ss_pred cCceEEEEeeeCCCC--CCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccccc-cc
Q 003037 458 VEKVRHSMLKLGYDS--FPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIP-KE 534 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~--~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP-~~ 534 (854)
..++.++.+.++.+. ..+.+..++.||+|+++.|. +..+...+|..-.++..|+|++|. |+.+- ..
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~---is~i~~~sfp~~~ni~~L~La~N~--------It~l~~~~ 192 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL---ISEIPKPSFPAKVNIKKLNLASNR--------ITTLETGH 192 (873)
T ss_pred ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch---hhcccCCCCCCCCCceEEeecccc--------cccccccc
Confidence 456777777777654 23455667778888888777 444334456666778888888877 66653 45
Q ss_pred ccccCCCceeeecCCCCcccch-hhhcCCCCcEEeecCccccccc-ccccccCCCCcccCceee-----cCC--------
Q 003037 535 IKKLIHLRFLKLVWLDIEELPE-TCCELFNVQTLEVLDCRSFRRL-PQGFGKLVNLRNLSKFIV-----SRS-------- 599 (854)
Q Consensus 535 i~~L~~L~~L~L~~~~i~~lP~-~i~~L~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L~~~~~-----~~~-------- 599 (854)
|..|.+|-.|.|+.|.|+.+|. +|.+|++|+.|+|..|+ ++.+ --.|..|++|+.|..-.. .+.
T Consensus 193 F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~km 271 (873)
T KOG4194|consen 193 FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKM 271 (873)
T ss_pred ccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeeccc
Confidence 6677777888888888887775 34558888888887776 4443 223455666665521111 000
Q ss_pred -------------CCCCcccccccccCCceeEEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhh
Q 003037 600 -------------GGSKLEDLRQLKHLRGSLKIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEA 666 (854)
Q Consensus 600 -------------~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 666 (854)
....+-+|..|+.| .++. +.+.........-+++|+.|+|+.|...+. -.++
T Consensus 272 e~l~L~~N~l~~vn~g~lfgLt~L~~L----~lS~----NaI~rih~d~WsftqkL~~LdLs~N~i~~l-------~~~s 336 (873)
T KOG4194|consen 272 EHLNLETNRLQAVNEGWLFGLTSLEQL----DLSY----NAIQRIHIDSWSFTQKLKELDLSSNRITRL-------DEGS 336 (873)
T ss_pred ceeecccchhhhhhcccccccchhhhh----ccch----hhhheeecchhhhcccceeEeccccccccC-------ChhH
Confidence 01111222222222 2211 112222234456678999999999822111 1233
Q ss_pred CCCCCCCCeEEEeccCCCCCCCC-chhhcccCccEEEEecccCCCCCC----CCCCCCCCCEEEEcCCCCceEeCccccC
Q 003037 667 LQPPPNIESLRIEYHYIGISGWP-SWIVSLNKLKKLVLYQFYLCDTMP----PLGKLPSLEILEIRGNWNVKRVGDEFLG 741 (854)
Q Consensus 667 l~~~~~L~~L~l~~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~l~----~l~~L~~L~~L~L~~~~~l~~i~~~~~~ 741 (854)
+..+..|++|+| +.+.... +- ..+..+++|++|+|++|.+...+. .+..|++|+.|.+.+|. ++.|+...+
T Consensus 337 f~~L~~Le~LnL-s~Nsi~~-l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~krAf- 412 (873)
T KOG4194|consen 337 FRVLSQLEELNL-SHNSIDH-LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIPKRAF- 412 (873)
T ss_pred HHHHHHhhhhcc-cccchHH-HHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-eeecchhhh-
Confidence 455678999999 4443322 32 235579999999999997644322 26679999999999998 899987654
Q ss_pred CCCCCCCccccCCccccCCCccceeeccccccccccccCCCccccCCCccceeeecc------cccCcCCCcCCCCCCCc
Q 003037 742 VGGGDHLHGISTSSSVIAFPKLKQVLFYNICHWEEWDFGKGDSITIMPQLKKLEFER------CTELKSVPEKLLRSTTL 815 (854)
Q Consensus 742 ~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~------c~~l~~lp~~l~~l~~L 815 (854)
.+|++|+.|++.+ +.+....+.++..| .|++|.+.. | .++=++.++... .|
T Consensus 413 ----------------sgl~~LE~LdL~~----NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDC-ql~Wl~qWl~~~-~l 469 (873)
T KOG4194|consen 413 ----------------SGLEALEHLDLGD----NAIASIQPNAFEPM-ELKELVMNSSSFLCDC-QLKWLAQWLYRR-KL 469 (873)
T ss_pred ----------------ccCcccceecCCC----Ccceeecccccccc-hhhhhhhcccceEEec-cHHHHHHHHHhc-cc
Confidence 3789999999988 33333333455567 888887643 4 344455555432 45
Q ss_pred CEEEEecC
Q 003037 816 EELSIVEC 823 (854)
Q Consensus 816 ~~L~l~~c 823 (854)
+.-.+-.|
T Consensus 470 q~sv~a~C 477 (873)
T KOG4194|consen 470 QSSVIAKC 477 (873)
T ss_pred ccceeeec
Confidence 55555556
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.65 E-value=7e-19 Score=177.20 Aligned_cols=248 Identities=21% Similarity=0.299 Sum_probs=140.5
Q ss_pred cccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccccCCCceeeecCCCCccc
Q 003037 475 DSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIEEL 554 (854)
Q Consensus 475 ~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~~l 554 (854)
+.+.++..|.+|.+.++. ... +|..++.+..+..|+.++|. +.++|+.++.+..|+.|+.++|.+.++
T Consensus 62 ~dl~nL~~l~vl~~~~n~---l~~-lp~aig~l~~l~~l~vs~n~--------ls~lp~~i~s~~~l~~l~~s~n~~~el 129 (565)
T KOG0472|consen 62 EDLKNLACLTVLNVHDNK---LSQ-LPAAIGELEALKSLNVSHNK--------LSELPEQIGSLISLVKLDCSSNELKEL 129 (565)
T ss_pred HhhhcccceeEEEeccch---hhh-CCHHHHHHHHHHHhhcccch--------HhhccHHHhhhhhhhhhhccccceeec
Confidence 344444555555555544 233 34445555555555555555 555555555555555555555555555
Q ss_pred chhhhcCCCCcEEeecCcccccccccccccCCCCcccCceeecCCCCCCcccccccccCCceeEEecccCCCChhHHHHh
Q 003037 555 PETCCELFNVQTLEVLDCRSFRRLPQGFGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLGNVRDADEAKSA 634 (854)
Q Consensus 555 P~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~ 634 (854)
|++++.+..|+.|+..+|+ +..+|.+++.+.+|..|
T Consensus 130 ~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l------------------------------------------- 165 (565)
T KOG0472|consen 130 PDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKL------------------------------------------- 165 (565)
T ss_pred CchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHh-------------------------------------------
Confidence 5555555555555555554 45555555444444333
Q ss_pred hccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCchhhcccCccEEEEecccCCCCCCC
Q 003037 635 ELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCDTMPP 714 (854)
Q Consensus 635 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~ 714 (854)
.+.++ .....++..-.+..|++|+. ..+.... +|.-++.+.+|..|+|..|++ ..+|.
T Consensus 166 -----------~~~~n--------~l~~l~~~~i~m~~L~~ld~-~~N~L~t-lP~~lg~l~~L~~LyL~~Nki-~~lPe 223 (565)
T KOG0472|consen 166 -----------DLEGN--------KLKALPENHIAMKRLKHLDC-NSNLLET-LPPELGGLESLELLYLRRNKI-RFLPE 223 (565)
T ss_pred -----------hcccc--------chhhCCHHHHHHHHHHhccc-chhhhhc-CChhhcchhhhHHHHhhhccc-ccCCC
Confidence 33322 11222222222445555555 3333333 666666677777777766654 34556
Q ss_pred CCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCCCccceeeccccccccccccCCCccccCCCcccee
Q 003037 715 LGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLKQVLFYNICHWEEWDFGKGDSITIMPQLKKL 794 (854)
Q Consensus 715 l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L 794 (854)
++.+..|++|+++.|. ++.+|.+.. ..+++|..|++.+ +++++++. .+.-+.+|++|
T Consensus 224 f~gcs~L~Elh~g~N~-i~~lpae~~-----------------~~L~~l~vLDLRd-Nklke~Pd----e~clLrsL~rL 280 (565)
T KOG0472|consen 224 FPGCSLLKELHVGENQ-IEMLPAEHL-----------------KHLNSLLVLDLRD-NKLKEVPD----EICLLRSLERL 280 (565)
T ss_pred CCccHHHHHHHhcccH-HHhhHHHHh-----------------cccccceeeeccc-cccccCch----HHHHhhhhhhh
Confidence 6667777777776665 566665532 2466777777766 45555554 33467788888
Q ss_pred eecccccCcCCCcCCCCCCCcCEEEEecCcc
Q 003037 795 EFERCTELKSVPEKLLRSTTLEELSIVECPI 825 (854)
Q Consensus 795 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 825 (854)
++++| .+..+|..++++ .|+.|-+.|+|-
T Consensus 281 DlSNN-~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 281 DLSNN-DISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred cccCC-ccccCCcccccc-eeeehhhcCCch
Confidence 88877 678888888888 888888888884
No 13
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.57 E-value=2.6e-13 Score=167.88 Aligned_cols=297 Identities=15% Similarity=0.185 Sum_probs=184.9
Q ss_pred ccccCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeC-CccCHHH
Q 003037 92 SLIDVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVS-DPFDEFR 170 (854)
Q Consensus 92 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~ 170 (854)
+|..++.+|-|+.-.+++.. ....+++.|+|++|.||||++.++... ++.++|+++. .+.++..
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~---------~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~ 73 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSG---------ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPER 73 (903)
T ss_pred CCCCccccCcchHHHHHHhc---------ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHH
Confidence 44556778888866666532 125789999999999999999998862 2268899996 4456667
Q ss_pred HHHHHHHHhcCCCCC-------------CccHHHHHHHHHHHhc--CCeEEEEEecCCCcChhhHH-HHHHhhcCCCCCc
Q 003037 171 IAKAIIEALEGSTPS-------------LGELNSLLERIYASIA--RKKFLLVLDDVWTEDYNKWE-TFQRCLKNGLRGS 234 (854)
Q Consensus 171 ~~~~i~~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~-~l~~~l~~~~~gs 234 (854)
+...++..+...... ..+...+...+...+. +.+++|||||++.-+..... .+...+.....+.
T Consensus 74 f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~ 153 (903)
T PRK04841 74 FASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENL 153 (903)
T ss_pred HHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCe
Confidence 777777777422111 0122333333433433 67999999999764433433 3444444455667
Q ss_pred EEEEecccHHHH---hhccCcceEecC----CCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHHH
Q 003037 235 KILVTTRKMTVA---QMMQSNDVILIR----ELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTIG 307 (854)
Q Consensus 235 ~ilvTtR~~~v~---~~~~~~~~~~l~----~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~ 307 (854)
++|||||...-. .........++. +|+.+|+.++|....... . -.+.+.+|++.|+|+|+++..++
T Consensus 154 ~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~---~----~~~~~~~l~~~t~Gwp~~l~l~~ 226 (903)
T PRK04841 154 TLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP---I----EAAESSRLCDDVEGWATALQLIA 226 (903)
T ss_pred EEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC---C----CHHHHHHHHHHhCChHHHHHHHH
Confidence 898999974211 111112344555 899999999997654211 1 13456779999999999999988
Q ss_pred hhhccCCC-HHHHHHHHhhhcCCccc-cccCccchhh-cccCCChHHHHHHHhhhhcCCCCceechHHHHHHHHHhCccc
Q 003037 308 SLLRFKRS-SREWQSILDSEIGQLEE-FERGLLPPLL-LSYNDMPSVIKWSFSYCAIFPKDYNIEKDELIKLWLAQGYIR 384 (854)
Q Consensus 308 ~~l~~~~~-~~~w~~~~~~~~~~~~~-~~~~v~~~l~-~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~Wia~g~i~ 384 (854)
..++.... .... . +.+.. ....+...+. -.|+.||+..+..+...|+++ .++.+.+- .+..
T Consensus 227 ~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~------~l~~ 290 (903)
T PRK04841 227 LSARQNNSSLHDS---A----RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIV------RVTG 290 (903)
T ss_pred HHHhhCCCchhhh---h----HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHH------HHcC
Confidence 77754322 1110 0 11111 0112333333 337899999999999999996 33332222 1111
Q ss_pred CCCCchHHHHHHHHHHHHHhccccccccccCCCCeEeEEEechhHHHHHHHhh
Q 003037 385 PKENKELEMIVEEYFDYLAARSFFQEFEREHTEGLVVRCKMHDIVHDFAQYLT 437 (854)
Q Consensus 385 ~~~~~~~e~~~~~~l~~L~~~sli~~~~~~~~~~~~~~~~mHdlv~~~a~~~~ 437 (854)
. +.+.+.+++|.+.+++...... .+. .|+.|++++++.+...
T Consensus 291 ~-------~~~~~~L~~l~~~~l~~~~~~~-~~~---~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 E-------ENGQMRLEELERQGLFIQRMDD-SGE---WFRYHPLFASFLRHRC 332 (903)
T ss_pred C-------CcHHHHHHHHHHCCCeeEeecC-CCC---EEehhHHHHHHHHHHH
Confidence 1 1246789999999997532211 111 4788999999998764
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.56 E-value=7.3e-17 Score=179.16 Aligned_cols=91 Identities=26% Similarity=0.410 Sum_probs=51.7
Q ss_pred ceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccccCCCceeeecCCCCcccchhhhcCC
Q 003037 483 LRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIEELPETCCELF 562 (854)
Q Consensus 483 Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~ 562 (854)
|.+|+++++. +.. .|..+..+.+|+.|.++.|. +..+|.+++++.+|++|+|.+|.+..+|.++..++
T Consensus 47 L~~l~lsnn~---~~~-fp~~it~l~~L~~ln~s~n~--------i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lk 114 (1081)
T KOG0618|consen 47 LKSLDLSNNQ---ISS-FPIQITLLSHLRQLNLSRNY--------IRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELK 114 (1081)
T ss_pred eEEeeccccc---ccc-CCchhhhHHHHhhcccchhh--------HhhCchhhhhhhcchhheeccchhhcCchhHHhhh
Confidence 5566666555 222 34445555666666666655 55666666666666666666666666666666666
Q ss_pred CCcEEeecCcccccccccccccCC
Q 003037 563 NVQTLEVLDCRSFRRLPQGFGKLV 586 (854)
Q Consensus 563 ~L~~L~l~~~~~l~~lp~~i~~L~ 586 (854)
+|+.||++.|. ....|.-+..++
T Consensus 115 nl~~LdlS~N~-f~~~Pl~i~~lt 137 (1081)
T KOG0618|consen 115 NLQYLDLSFNH-FGPIPLVIEVLT 137 (1081)
T ss_pred cccccccchhc-cCCCchhHHhhh
Confidence 66666666655 444554443333
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.51 E-value=1e-15 Score=170.28 Aligned_cols=101 Identities=21% Similarity=0.281 Sum_probs=84.1
Q ss_pred ceEEEEeeeCCCC-CCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccccccccccc
Q 003037 460 KVRHSMLKLGYDS-FPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKL 538 (854)
Q Consensus 460 ~~r~l~l~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L 538 (854)
++.++.+.++... +|..+..+.+|+.|.++.|. +.. .|....++++|++|.|.+|. +..+|.++..+
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~---i~~-vp~s~~~~~~l~~lnL~~n~--------l~~lP~~~~~l 113 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNY---IRS-VPSSCSNMRNLQYLNLKNNR--------LQSLPASISEL 113 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhh---Hhh-Cchhhhhhhcchhheeccch--------hhcCchhHHhh
Confidence 3667777777654 77888888999999999887 554 67888999999999999998 89999999999
Q ss_pred CCCceeeecCCCCcccchhhhcCCCCcEEeecCc
Q 003037 539 IHLRFLKLVWLDIEELPETCCELFNVQTLEVLDC 572 (854)
Q Consensus 539 ~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~ 572 (854)
++|+||++++|.+...|.-+..+..+..+..++|
T Consensus 114 knl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 114 KNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNN 147 (1081)
T ss_pred hcccccccchhccCCCchhHHhhhHHHHHhhhcc
Confidence 9999999999999988887777766666666665
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.51 E-value=7.2e-14 Score=160.91 Aligned_cols=85 Identities=22% Similarity=0.305 Sum_probs=50.0
Q ss_pred CceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccccCCCceeeecCCCCcccchhhhcC
Q 003037 482 KLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIEELPETCCEL 561 (854)
Q Consensus 482 ~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~~lP~~i~~L 561 (854)
+|+.|.+.+|. +.. +|. .+++|++|+|++|. +..+|.. ..+|+.|++++|.++.+|...
T Consensus 223 ~L~~L~L~~N~---Lt~-LP~---lp~~Lk~LdLs~N~--------LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp--- 281 (788)
T PRK15387 223 HITTLVIPDNN---LTS-LPA---LPPELRTLEVSGNQ--------LTSLPVL---PPGLLELSIFSNPLTHLPALP--- 281 (788)
T ss_pred CCCEEEccCCc---CCC-CCC---CCCCCcEEEecCCc--------cCcccCc---ccccceeeccCCchhhhhhch---
Confidence 56667666665 333 332 24567777777766 6666643 246666777777766666532
Q ss_pred CCCcEEeecCcccccccccccccCCCCccc
Q 003037 562 FNVQTLEVLDCRSFRRLPQGFGKLVNLRNL 591 (854)
Q Consensus 562 ~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L 591 (854)
.+|+.|++++|. +..+|.. +++|+.|
T Consensus 282 ~~L~~L~Ls~N~-Lt~LP~~---p~~L~~L 307 (788)
T PRK15387 282 SGLCKLWIFGNQ-LTSLPVL---PPGLQEL 307 (788)
T ss_pred hhcCEEECcCCc-ccccccc---cccccee
Confidence 456666777666 6666642 2445544
No 17
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.46 E-value=3.5e-11 Score=133.46 Aligned_cols=317 Identities=13% Similarity=0.088 Sum_probs=186.1
Q ss_pred ccCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHH
Q 003037 94 IDVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAK 173 (854)
Q Consensus 94 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 173 (854)
..|+.++||++++++|...+...-. ......+.|+|++|+|||++++.++++.......-..+++++....+...++.
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHH
Confidence 3567899999999999999854322 22445678999999999999999998533222123556777777778888999
Q ss_pred HHHHHhcCC-C-CCCccHHHHHHHHHHHhc--CCeEEEEEecCCCcC----hhhHHHHHHhhcCCCCCcE--EEEecccH
Q 003037 174 AIIEALEGS-T-PSLGELNSLLERIYASIA--RKKFLLVLDDVWTED----YNKWETFQRCLKNGLRGSK--ILVTTRKM 243 (854)
Q Consensus 174 ~i~~~l~~~-~-~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~----~~~~~~l~~~l~~~~~gs~--ilvTtR~~ 243 (854)
.+++++... . ....+.+++...+.+.+. +++.+||||+++.-. .+.+..+...+... .+++ +|.++...
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~-~~~~v~vI~i~~~~ 183 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY-PGARIGVIGISSDL 183 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc-CCCeEEEEEEECCc
Confidence 999998762 2 223356667777777765 457899999996421 12233333332222 2333 55555544
Q ss_pred HHHhhcc-------CcceEecCCCCHHHHHHHHHHHhcCC--CCCCCchHHHHHHHHHHhhcCCCcHHHHHHHhhh--c-
Q 003037 244 TVAQMMQ-------SNDVILIRELSEQACWSLFEQLAFFG--RPRSECEQLIEIGRKIVGKCKGLPLAAKTIGSLL--R- 311 (854)
Q Consensus 244 ~v~~~~~-------~~~~~~l~~L~~~e~~~l~~~~~~~~--~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~l--~- 311 (854)
.+..... ....+.+++++.++..+++..++... ........++.+++......|..+.|+.++-... .
T Consensus 184 ~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 184 TFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAE 263 (394)
T ss_pred chhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 3322211 12468899999999999998776321 1112334445555544444666787877764322 1
Q ss_pred -c-C--CCHHHHHHHHhhhcCCccccccCccchhhcccCCChHHHHHHHhhhhc-CCC-CceechHHHHH--HHHHhCcc
Q 003037 312 -F-K--RSSREWQSILDSEIGQLEEFERGLLPPLLLSYNDMPSVIKWSFSYCAI-FPK-DYNIEKDELIK--LWLAQGYI 383 (854)
Q Consensus 312 -~-~--~~~~~w~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~k~cf~~~s~-fp~-~~~i~~~~li~--~Wia~g~i 383 (854)
. . -+.+....+++... .....-.+..||.+.|..+..++. ... ...+....+.. ..+++.+-
T Consensus 264 ~~~~~~I~~~~v~~a~~~~~----------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~ 333 (394)
T PRK00411 264 REGSRKVTEEDVRKAYEKSE----------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELG 333 (394)
T ss_pred HcCCCCcCHHHHHHHHHHHH----------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcC
Confidence 1 1 14555555554431 112334578999988876655442 221 12344444443 22332211
Q ss_pred cCCCCchHHHHHHHHHHHHHhccccccccc--cCCCCeEeEEEech
Q 003037 384 RPKENKELEMIVEEYFDYLAARSFFQEFER--EHTEGLVVRCKMHD 427 (854)
Q Consensus 384 ~~~~~~~~e~~~~~~l~~L~~~sli~~~~~--~~~~~~~~~~~mHd 427 (854)
. ...+ .....+|+++|...|+|..... +..|..+ .++++.
T Consensus 334 ~--~~~~-~~~~~~~l~~L~~~glI~~~~~~~g~~g~~~-~~~~~~ 375 (394)
T PRK00411 334 Y--EPRT-HTRFYEYINKLDMLGIINTRYSGKGGRGRTR-LISLSY 375 (394)
T ss_pred C--CcCc-HHHHHHHHHHHHhcCCeEEEEecCCCCCCeE-EEEecC
Confidence 0 0111 1234569999999999986542 3344444 455543
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.44 E-value=1.5e-13 Score=159.49 Aligned_cols=108 Identities=21% Similarity=0.337 Sum_probs=70.7
Q ss_pred eEEEEeeeCCCC-CCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccccC
Q 003037 461 VRHSMLKLGYDS-FPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLI 539 (854)
Q Consensus 461 ~r~l~l~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~ 539 (854)
...+.+...... +|..+ .++|+.|.+.+|. +.. +|..+ +.+|++|++++|. +..+|..+. .
T Consensus 180 ~~~L~L~~~~LtsLP~~I--p~~L~~L~Ls~N~---Lts-LP~~l--~~nL~~L~Ls~N~--------LtsLP~~l~--~ 241 (754)
T PRK15370 180 KTELRLKILGLTTIPACI--PEQITTLILDNNE---LKS-LPENL--QGNIKTLYANSNQ--------LTSIPATLP--D 241 (754)
T ss_pred ceEEEeCCCCcCcCCccc--ccCCcEEEecCCC---CCc-CChhh--ccCCCEEECCCCc--------cccCChhhh--c
Confidence 344555544433 44433 2568888888776 444 44433 2578888888887 777776654 3
Q ss_pred CCceeeecCCCCcccchhhhcCCCCcEEeecCcccccccccccccCCCCccc
Q 003037 540 HLRFLKLVWLDIEELPETCCELFNVQTLEVLDCRSFRRLPQGFGKLVNLRNL 591 (854)
Q Consensus 540 ~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L 591 (854)
+|+.|+|++|.+..+|..+. .+|++|++++|. +..+|..+. ++|++|
T Consensus 242 ~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L 288 (754)
T PRK15370 242 TIQEMELSINRITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYL 288 (754)
T ss_pred cccEEECcCCccCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEE
Confidence 68888888888888887664 478888888776 777776553 355555
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.38 E-value=7e-13 Score=153.95 Aligned_cols=104 Identities=20% Similarity=0.363 Sum_probs=62.2
Q ss_pred cCceEEEEeeeCCCC-CCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccccccccc
Q 003037 458 VEKVRHSMLKLGYDS-FPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIK 536 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~ 536 (854)
+..++.+.+.++... +|..+. .+|++|.+.+|. +.. +|..+. .+|+.|+|++|. +..+|..+.
T Consensus 198 p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~---Lts-LP~~l~--~~L~~L~Ls~N~--------L~~LP~~l~ 261 (754)
T PRK15370 198 PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ---LTS-IPATLP--DTIQEMELSINR--------ITELPERLP 261 (754)
T ss_pred ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc---ccc-CChhhh--ccccEEECcCCc--------cCcCChhHh
Confidence 445666666666544 333322 467777777665 333 343332 356777777776 666666554
Q ss_pred ccCCCceeeecCCCCcccchhhhcCCCCcEEeecCccccccccccc
Q 003037 537 KLIHLRFLKLVWLDIEELPETCCELFNVQTLEVLDCRSFRRLPQGF 582 (854)
Q Consensus 537 ~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i 582 (854)
.+|++|++++|.++.+|..+. .+|++|++++|. +..+|..+
T Consensus 262 --s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~l 302 (754)
T PRK15370 262 --SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAHL 302 (754)
T ss_pred --CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCcccc
Confidence 367777777777777766554 467777777765 66666543
No 20
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.36 E-value=6.1e-11 Score=132.52 Aligned_cols=302 Identities=18% Similarity=0.201 Sum_probs=193.5
Q ss_pred cccccCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCC-ccCHH
Q 003037 91 TSLIDVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSD-PFDEF 169 (854)
Q Consensus 91 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~ 169 (854)
.+|..+...|-|..-++.+.. ..+.|++.|..++|.|||||+.+++. ....-..+.|.++++ +.++.
T Consensus 13 ~~P~~~~~~v~R~rL~~~L~~---------~~~~RL~li~APAGfGKttl~aq~~~---~~~~~~~v~Wlslde~dndp~ 80 (894)
T COG2909 13 VRPVRPDNYVVRPRLLDRLRR---------ANDYRLILISAPAGFGKTTLLAQWRE---LAADGAAVAWLSLDESDNDPA 80 (894)
T ss_pred CCCCCcccccccHHHHHHHhc---------CCCceEEEEeCCCCCcHHHHHHHHHH---hcCcccceeEeecCCccCCHH
Confidence 344456678877766555544 23689999999999999999999976 223345789999875 45788
Q ss_pred HHHHHHHHHhcCCCCC-------------CccHHHHHHHHHHHhc--CCeEEEEEecCCCcC-hhhHHHHHHhhcCCCCC
Q 003037 170 RIAKAIIEALEGSTPS-------------LGELNSLLERIYASIA--RKKFLLVLDDVWTED-YNKWETFQRCLKNGLRG 233 (854)
Q Consensus 170 ~~~~~i~~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-~~~~~~l~~~l~~~~~g 233 (854)
.....++..+....++ ..++..+...+...+. .++..+||||.+-.. +.--+.+...+...+.+
T Consensus 81 rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~ 160 (894)
T COG2909 81 RFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPEN 160 (894)
T ss_pred HHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCC
Confidence 8888888888743222 2234445555555554 468999999986533 23334455556666788
Q ss_pred cEEEEecccHHHHhh---ccCcceEecC----CCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHH
Q 003037 234 SKILVTTRKMTVAQM---MQSNDVILIR----ELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTI 306 (854)
Q Consensus 234 s~ilvTtR~~~v~~~---~~~~~~~~l~----~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~ 306 (854)
-..|||||+..-... --....+++. .|+.+|+.++|...... +-.+..++.+.++.+|.+-|+..+
T Consensus 161 l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l-------~Ld~~~~~~L~~~teGW~~al~L~ 233 (894)
T COG2909 161 LTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL-------PLDAADLKALYDRTEGWAAALQLI 233 (894)
T ss_pred eEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCC-------CCChHHHHHHHhhcccHHHHHHHH
Confidence 899999998643221 1112233333 48999999999886421 112345677999999999999999
Q ss_pred HhhhccCCCHHHHHHHHhhhcCCccccccCccch-hhcccCCChHHHHHHHhhhhcCCCCceechHHHHHHHHHhCcccC
Q 003037 307 GSLLRFKRSSREWQSILDSEIGQLEEFERGLLPP-LLLSYNDMPSVIKWSFSYCAIFPKDYNIEKDELIKLWLAQGYIRP 385 (854)
Q Consensus 307 ~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~v~~~-l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~Wia~g~i~~ 385 (854)
+-.++...+.+.-...+.- ...-+.+- ..--++.||+++|..++-||+++. +. ..|+..-
T Consensus 234 aLa~~~~~~~~q~~~~LsG-------~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~---f~-~eL~~~L-------- 294 (894)
T COG2909 234 ALALRNNTSAEQSLRGLSG-------AASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR---FN-DELCNAL-------- 294 (894)
T ss_pred HHHccCCCcHHHHhhhccc-------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH---hh-HHHHHHH--------
Confidence 9888844444333222210 00001111 112357899999999999999842 11 1222211
Q ss_pred CCCchHHHHHHHHHHHHHhccccccccccCCCCeEeEEEechhHHHHHHHhhc
Q 003037 386 KENKELEMIVEEYFDYLAARSFFQEFEREHTEGLVVRCKMHDIVHDFAQYLTK 438 (854)
Q Consensus 386 ~~~~~~e~~~~~~l~~L~~~sli~~~~~~~~~~~~~~~~mHdlv~~~a~~~~~ 438 (854)
+-++-+..++++|.+++|+-..-.+..+ .|+.|.++.||.+..-.
T Consensus 295 ----tg~~ng~amLe~L~~~gLFl~~Ldd~~~----WfryH~LFaeFL~~r~~ 339 (894)
T COG2909 295 ----TGEENGQAMLEELERRGLFLQRLDDEGQ----WFRYHHLFAEFLRQRLQ 339 (894)
T ss_pred ----hcCCcHHHHHHHHHhCCCceeeecCCCc----eeehhHHHHHHHHhhhc
Confidence 1123466789999999987543322222 69999999999876543
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.35 E-value=1.8e-14 Score=128.93 Aligned_cols=165 Identities=23% Similarity=0.275 Sum_probs=95.0
Q ss_pred cCCCcccEEEecCCCCccccccccccccccccccCCCceeeecCCCCcccchhhhcCCCCcEEeecCccccccccccccc
Q 003037 505 DQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIEELPETCCELFNVQTLEVLDCRSFRRLPQGFGK 584 (854)
Q Consensus 505 ~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~ 584 (854)
-++.+...|-|++|. +..+|..|..|.+|+.|++++|+|+++|.+|+.|++|++|++.-|+ +..+|.++|.
T Consensus 30 f~~s~ITrLtLSHNK--------l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs 100 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNK--------LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGS 100 (264)
T ss_pred cchhhhhhhhcccCc--------eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCC
Confidence 355666667777777 7777777777777777777777777777777777777777777666 6677777777
Q ss_pred CCCCcccCceeecCCCCCCcccccccccCCceeEEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHh
Q 003037 585 LVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAII 664 (854)
Q Consensus 585 L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 664 (854)
++.|+.|..-. +++.. ..++.++..+..|+.|.++.+ ..+.++
T Consensus 101 ~p~levldlty------------------------nnl~e-----~~lpgnff~m~tlralyl~dn--------dfe~lp 143 (264)
T KOG0617|consen 101 FPALEVLDLTY------------------------NNLNE-----NSLPGNFFYMTTLRALYLGDN--------DFEILP 143 (264)
T ss_pred Cchhhhhhccc------------------------ccccc-----ccCCcchhHHHHHHHHHhcCC--------CcccCC
Confidence 77776662211 11000 011122333344444555444 233344
Q ss_pred hhCCCCCCCCeEEEeccCCCCCCCCchhhcccCccEEEEecccCCCCCCCCCC
Q 003037 665 EALQPPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCDTMPPLGK 717 (854)
Q Consensus 665 ~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~ 717 (854)
..+..+.+|+-|.+ +.+.... +|.-++.++.|+.|++.+|.+...+|.+++
T Consensus 144 ~dvg~lt~lqil~l-rdndll~-lpkeig~lt~lrelhiqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 144 PDVGKLTNLQILSL-RDNDLLS-LPKEIGDLTRLRELHIQGNRLTVLPPELAN 194 (264)
T ss_pred hhhhhhcceeEEee-ccCchhh-CcHHHHHHHHHHHHhcccceeeecChhhhh
Confidence 44455555555555 4443333 566666666666666666654443443443
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.34 E-value=5.8e-12 Score=145.37 Aligned_cols=240 Identities=19% Similarity=0.171 Sum_probs=145.6
Q ss_pred cCceEEEEeeeCCCCCCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccc
Q 003037 458 VEKVRHSMLKLGYDSFPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKK 537 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~ 537 (854)
+.+++.|.+..+.....+. .+++|++|.+.+|. +.. +|. ..++|+.|++++|. +..+|...
T Consensus 221 ~~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~---Lts-LP~---lp~sL~~L~Ls~N~--------L~~Lp~lp-- 281 (788)
T PRK15387 221 PAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQ---LTS-LPV---LPPGLLELSIFSNP--------LTHLPALP-- 281 (788)
T ss_pred hcCCCEEEccCCcCCCCCC--CCCCCcEEEecCCc---cCc-ccC---cccccceeeccCCc--------hhhhhhch--
Confidence 4578888888887663332 35889999999987 554 443 24689999999998 88888643
Q ss_pred cCCCceeeecCCCCcccchhhhcCCCCcEEeecCcccccccccccccCCCCcccCceeecCCCCCCcccccccccCCcee
Q 003037 538 LIHLRFLKLVWLDIEELPETCCELFNVQTLEVLDCRSFRRLPQGFGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSL 617 (854)
Q Consensus 538 L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L 617 (854)
..|+.|++++|.++.+|.. +++|+.|++++|. +..+|.... +|+.|.. ..+ .+..++
T Consensus 282 -~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~lp~---~L~~L~L---s~N---~L~~LP--------- 338 (788)
T PRK15387 282 -SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPALPS---ELCKLWA---YNN---QLTSLP--------- 338 (788)
T ss_pred -hhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCCcc---ccccccc---ccC---cccccc---------
Confidence 5688999999999999963 5789999999997 788876332 3333311 000 000000
Q ss_pred EEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCchhhcccC
Q 003037 618 KIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWIVSLNK 697 (854)
Q Consensus 618 ~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~ 697 (854)
. ...+|+.|+++.|. ...++. .+++|+.|++ .++.... +|.. ..+
T Consensus 339 ---------~----------lp~~Lq~LdLS~N~--------Ls~LP~---lp~~L~~L~L-s~N~L~~-LP~l---~~~ 383 (788)
T PRK15387 339 ---------T----------LPSGLQELSVSDNQ--------LASLPT---LPSELYKLWA-YNNRLTS-LPAL---PSG 383 (788)
T ss_pred ---------c----------cccccceEecCCCc--------cCCCCC---CCcccceehh-hcccccc-Cccc---ccc
Confidence 0 01356677776651 111111 1346677777 4444433 5642 346
Q ss_pred ccEEEEecccCCCCCCCCCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCCCccceeecccccccccc
Q 003037 698 LKKLVLYQFYLCDTMPPLGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLKQVLFYNICHWEEW 777 (854)
Q Consensus 698 L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 777 (854)
|+.|+|++|.+.. +|.. .++|+.|++++|. +..+|. .+.+|+.|++.+ +++..+
T Consensus 384 L~~LdLs~N~Lt~-LP~l--~s~L~~LdLS~N~-LssIP~---------------------l~~~L~~L~Ls~-NqLt~L 437 (788)
T PRK15387 384 LKELIVSGNRLTS-LPVL--PSELKELMVSGNR-LTSLPM---------------------LPSGLLSLSVYR-NQLTRL 437 (788)
T ss_pred cceEEecCCcccC-CCCc--ccCCCEEEccCCc-CCCCCc---------------------chhhhhhhhhcc-Cccccc
Confidence 7777777776543 4432 2567777777765 444442 123455666655 334444
Q ss_pred ccCCCccccCCCccceeeecccccCcC
Q 003037 778 DFGKGDSITIMPQLKKLEFERCTELKS 804 (854)
Q Consensus 778 ~~~~~~~~~~l~~L~~L~l~~c~~l~~ 804 (854)
+. .+..+++|+.|++++|+.-..
T Consensus 438 P~----sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 438 PE----SLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred Ch----HHhhccCCCeEECCCCCCCch
Confidence 32 344566777777777654333
No 23
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.33 E-value=2e-10 Score=120.34 Aligned_cols=183 Identities=16% Similarity=0.102 Sum_probs=117.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHH----H
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIY----A 198 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~----~ 198 (854)
...++.|+|++|+||||+++.+++.... +.+ ..+|+ +....+..+++..++..++..... .+.......+. .
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIE 117 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHH
Confidence 3557899999999999999999985321 111 22233 333457788899999888765332 22222333333 2
Q ss_pred H-hcCCeEEEEEecCCCcChhhHHHHHHhhcCC---CCCcEEEEecccHHHHhhcc----------CcceEecCCCCHHH
Q 003037 199 S-IARKKFLLVLDDVWTEDYNKWETFQRCLKNG---LRGSKILVTTRKMTVAQMMQ----------SNDVILIRELSEQA 264 (854)
Q Consensus 199 ~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~---~~gs~ilvTtR~~~v~~~~~----------~~~~~~l~~L~~~e 264 (854)
. ..+++.++|+||+|......++.+....... .....|++|.... ....+. ....+.+++++.+|
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 2 2678899999999887666677665433211 2223445555432 221111 13467899999999
Q ss_pred HHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHHHhhh
Q 003037 265 CWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTIGSLL 310 (854)
Q Consensus 265 ~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~l 310 (854)
..+++...+...+......-..+..+.|++.++|.|..|..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999987664322111122335678889999999999999988776
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.31 E-value=1.3e-12 Score=154.04 Aligned_cols=310 Identities=24% Similarity=0.273 Sum_probs=196.4
Q ss_pred cCceEEEEeeeCC---CCCCcc-cccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccc
Q 003037 458 VEKVRHSMLKLGY---DSFPDS-IFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPK 533 (854)
Q Consensus 458 ~~~~r~l~l~~~~---~~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~ 533 (854)
..+++.+.+..+. ...+.. |..++.||+|++++|.. ... +|..+++|-+||+|+|+++. +..+|.
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~--l~~-LP~~I~~Li~LryL~L~~t~--------I~~LP~ 612 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS--LSK-LPSSIGELVHLRYLDLSDTG--------ISHLPS 612 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc--cCc-CChHHhhhhhhhcccccCCC--------ccccch
Confidence 3468888888774 223333 66799999999998763 333 89999999999999999999 999999
Q ss_pred cccccCCCceeeecCCCC-cccchhhhcCCCCcEEeecCcccccccccccccCCCCcccCceeecCCCCCCccccccccc
Q 003037 534 EIKKLIHLRFLKLVWLDI-EELPETCCELFNVQTLEVLDCRSFRRLPQGFGKLVNLRNLSKFIVSRSGGSKLEDLRQLKH 612 (854)
Q Consensus 534 ~i~~L~~L~~L~L~~~~i-~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~ 612 (854)
.+++|..|.||++..+.- ..+|.....|++|++|.+.... ...-...++.+.+|++|..+.+...+...+..+..+..
T Consensus 613 ~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~ 691 (889)
T KOG4658|consen 613 GLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTR 691 (889)
T ss_pred HHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecchhHhHhhhhhhHH
Confidence 999999999999999884 4455555669999999998654 22222235666777777666654444322222222222
Q ss_pred CC---ceeEEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCC---CCCCCCeEEEeccCCCCC
Q 003037 613 LR---GSLKIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQ---PPPNIESLRIEYHYIGIS 686 (854)
Q Consensus 613 L~---~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~---~~~~L~~L~l~~~~~~~~ 686 (854)
|. ..+.+.+ .........+..+.+|+.|.+..+...... ....+... .++++..+.+ .++....
T Consensus 692 L~~~~~~l~~~~-----~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~----~~~~~~~~~~~~f~~l~~~~~-~~~~~~r 761 (889)
T KOG4658|consen 692 LRSLLQSLSIEG-----CSKRTLISSLGSLGNLEELSILDCGISEIV----IEWEESLIVLLCFPNLSKVSI-LNCHMLR 761 (889)
T ss_pred HHHHhHhhhhcc-----cccceeecccccccCcceEEEEcCCCchhh----cccccccchhhhHHHHHHHHh-hcccccc
Confidence 22 1222111 112334456778899999999987321100 00001111 1335555555 4555445
Q ss_pred CCCchhhcccCccEEEEecccCCCC-CCCCCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCCCccce
Q 003037 687 GWPSWIVSLNKLKKLVLYQFYLCDT-MPPLGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLKQ 765 (854)
Q Consensus 687 ~lp~~~~~l~~L~~L~L~~~~~~~~-l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~ 765 (854)
.+.|....++|+.|.+..|...+. +|....+..++.+.+..+. +...+ +.. ..++||++..
T Consensus 762 -~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~-~~~l~--~~~--------------~l~~l~~i~~ 823 (889)
T KOG4658|consen 762 -DLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNK-LEGLR--MLC--------------SLGGLPQLYW 823 (889)
T ss_pred -ccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccc-cccce--eee--------------cCCCCceeEe
Confidence 677887889999999999987764 4546666666654444332 11111 000 1235666666
Q ss_pred eeccccccccccccCCCccccCCCccceeeeccc-ccCcCCCcC
Q 003037 766 VLFYNICHWEEWDFGKGDSITIMPQLKKLEFERC-TELKSVPEK 808 (854)
Q Consensus 766 L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c-~~l~~lp~~ 808 (854)
+.+.... +..|....-+....||.+.++.+.+| ..+..+|..
T Consensus 824 ~~l~~~~-l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 824 LPLSFLK-LEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred cccCccc-hhheehhcCcccccCccccccceeccccceeecCCc
Confidence 6655532 55555544334557999999999997 778888866
No 25
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.30 E-value=9.7e-10 Score=120.67 Aligned_cols=303 Identities=12% Similarity=0.122 Sum_probs=172.5
Q ss_pred cCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccc-ccc---CeeEEEEeCCccCHHH
Q 003037 95 DVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVI-NHF---EKRIWVCVSDPFDEFR 170 (854)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f---~~~~wv~~s~~~~~~~ 170 (854)
.|+.++||++++++|...|..... ......+.|+|++|+|||++++.+++..... ... -..+|+++....+...
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~ 90 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQ 90 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHH
Confidence 356899999999999999875322 2245678999999999999999999852111 111 1456788777777888
Q ss_pred HHHHHHHHhc---CCCC-CCccHHHHHHHHHHHhc--CCeEEEEEecCCCcC---hhhHHHHHHhh-cCCC--CCcEEEE
Q 003037 171 IAKAIIEALE---GSTP-SLGELNSLLERIYASIA--RKKFLLVLDDVWTED---YNKWETFQRCL-KNGL--RGSKILV 238 (854)
Q Consensus 171 ~~~~i~~~l~---~~~~-~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---~~~~~~l~~~l-~~~~--~gs~ilv 238 (854)
++..|++++. ...+ ...+.++....+.+.+. +++++||||+++.-. ......+.... .... ....+|.
T Consensus 91 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~ 170 (365)
T TIGR02928 91 VLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIG 170 (365)
T ss_pred HHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEE
Confidence 9999999984 2221 22344555566666653 568899999995531 11122222211 1111 2234455
Q ss_pred ecccHHHHhhcc-----C--cceEecCCCCHHHHHHHHHHHhcCC-CCCCCchHHHHHHHHHHhhcCCCcHHH-HHHHhh
Q 003037 239 TTRKMTVAQMMQ-----S--NDVILIRELSEQACWSLFEQLAFFG-RPRSECEQLIEIGRKIVGKCKGLPLAA-KTIGSL 309 (854)
Q Consensus 239 TtR~~~v~~~~~-----~--~~~~~l~~L~~~e~~~l~~~~~~~~-~~~~~~~~~~~~~~~I~~~~~GlPLai-~~~~~~ 309 (854)
+|........+. . ...+.+++.+.++..+++..++... ....-.++..+.+..++..+.|.|-.+ .++-..
T Consensus 171 i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a 250 (365)
T TIGR02928 171 ISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVA 250 (365)
T ss_pred EECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 554332221111 1 2468899999999999998876311 111122333445556777788888544 332111
Q ss_pred h--c--c-C--CCHHHHHHHHhhhcCCccccccCccchhhcccCCChHHHHHHHhhhhcCC--CCceechHHHHHHHH--
Q 003037 310 L--R--F-K--RSSREWQSILDSEIGQLEEFERGLLPPLLLSYNDMPSVIKWSFSYCAIFP--KDYNIEKDELIKLWL-- 378 (854)
Q Consensus 310 l--~--~-~--~~~~~w~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~k~cf~~~s~fp--~~~~i~~~~li~~Wi-- 378 (854)
. . . . -+.+....+.+... .....-++..||.+.+..+..++..- ++..+....+...+-
T Consensus 251 ~~~a~~~~~~~it~~~v~~a~~~~~----------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~ 320 (365)
T TIGR02928 251 GEIAEREGAERVTEDHVEKAQEKIE----------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEV 320 (365)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHH----------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 1 1 1 1 13444444433321 11223456688888886655544211 333455555555321
Q ss_pred HhCcccCCCCchHHHHHHHHHHHHHhcccccccc
Q 003037 379 AQGYIRPKENKELEMIVEEYFDYLAARSFFQEFE 412 (854)
Q Consensus 379 a~g~i~~~~~~~~e~~~~~~l~~L~~~sli~~~~ 412 (854)
++. +.. .........++++.|...|+|....
T Consensus 321 ~~~-~~~--~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 321 CED-IGV--DPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHh-cCC--CCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 221 110 0122355667899999999998754
No 26
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.29 E-value=5.4e-14 Score=125.89 Aligned_cols=170 Identities=21% Similarity=0.239 Sum_probs=132.1
Q ss_pred cccccccccccCCCceeeecCCCCcccchhhhcCCCCcEEeecCcccccccccccccCCCCcccCceeecCCCCCCcccc
Q 003037 528 IVEIPKEIKKLIHLRFLKLVWLDIEELPETCCELFNVQTLEVLDCRSFRRLPQGFGKLVNLRNLSKFIVSRSGGSKLEDL 607 (854)
Q Consensus 528 i~~lP~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L 607 (854)
..++|. +.++.+...|.|++|.++.+|+.|..|.+|+.|++.+|+ ++++|..|+.|++|++|..
T Consensus 23 f~~~~g-Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnv-------------- 86 (264)
T KOG0617|consen 23 FEELPG-LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNV-------------- 86 (264)
T ss_pred Hhhccc-ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheec--------------
Confidence 344543 456778888999999999999999999999999999998 9999999999999999921
Q ss_pred cccccCCceeEEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCC
Q 003037 608 RQLKHLRGSLKIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISG 687 (854)
Q Consensus 608 ~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 687 (854)
.++.+. ..+..++.++-|+.|++.++.. .....+..+..+..|+-|++ ..+....
T Consensus 87 ----------gmnrl~-------~lprgfgs~p~levldltynnl------~e~~lpgnff~m~tlralyl-~dndfe~- 141 (264)
T KOG0617|consen 87 ----------GMNRLN-------ILPRGFGSFPALEVLDLTYNNL------NENSLPGNFFYMTTLRALYL-GDNDFEI- 141 (264)
T ss_pred ----------chhhhh-------cCccccCCCchhhhhhcccccc------ccccCCcchhHHHHHHHHHh-cCCCccc-
Confidence 111111 1224567788899999998721 22234445556677888888 5555444
Q ss_pred CCchhhcccCccEEEEecccCCCCCCCCCCCCCCCEEEEcCCCCceEeCccc
Q 003037 688 WPSWIVSLNKLKKLVLYQFYLCDTMPPLGKLPSLEILEIRGNWNVKRVGDEF 739 (854)
Q Consensus 688 lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~i~~~~ 739 (854)
+|.-++.+++|+.|.+.+|.+...+..+|.|..|++|.+.+|. +.-+|.+.
T Consensus 142 lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnr-l~vlppel 192 (264)
T KOG0617|consen 142 LPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR-LTVLPPEL 192 (264)
T ss_pred CChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccce-eeecChhh
Confidence 8988999999999999999887766669999999999999997 77777764
No 27
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.26 E-value=7.5e-11 Score=126.50 Aligned_cols=265 Identities=18% Similarity=0.168 Sum_probs=145.9
Q ss_pred cCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHH
Q 003037 95 DVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKA 174 (854)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 174 (854)
.-.+|+|+++.++.+...+...... ......+.|+|++|+||||||+.+++. ....+ .++..+ .......+..
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~-~~~~~~~ll~GppG~GKT~la~~ia~~--l~~~~---~~~~~~-~~~~~~~l~~ 95 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKR-GEALDHVLLYGPPGLGKTTLANIIANE--MGVNI---RITSGP-ALEKPGDLAA 95 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhc-CCCCCcEEEECCCCccHHHHHHHHHHH--hCCCe---EEEecc-cccChHHHHH
Confidence 4567999999999998887643211 234567889999999999999999984 22221 122211 1111112222
Q ss_pred HHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcC-------------------CCCCcE
Q 003037 175 IIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKN-------------------GLRGSK 235 (854)
Q Consensus 175 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~-------------------~~~gs~ 235 (854)
++..+ ++.-+|++|++..-.....+.+...+.. ..+.+-
T Consensus 96 ~l~~l----------------------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~l 153 (328)
T PRK00080 96 ILTNL----------------------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTL 153 (328)
T ss_pred HHHhc----------------------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceE
Confidence 22222 1233555565533221111222221111 012344
Q ss_pred EEEecccHHHHhhcc--CcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHHHhhhccC
Q 003037 236 ILVTTRKMTVAQMMQ--SNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTIGSLLRFK 313 (854)
Q Consensus 236 ilvTtR~~~v~~~~~--~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~l~~~ 313 (854)
|..|+|...+...+. ....+.+.+++.++..+++.+.+..... ....+.+..|++.|+|.|-.+..+...+.
T Consensus 154 i~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~----~~~~~~~~~ia~~~~G~pR~a~~~l~~~~-- 227 (328)
T PRK00080 154 IGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGV----EIDEEGALEIARRSRGTPRIANRLLRRVR-- 227 (328)
T ss_pred EeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHHcCCCchHHHHHHHHHH--
Confidence 556666543333221 1346899999999999999987753322 12235678899999999965554443321
Q ss_pred CCHHHHHHHHhhhcCCcc-ccccCccchhhcccCCChHHHHHHHh-hhhcCCCCceechHHHHHHHHHhCcccCCCCchH
Q 003037 314 RSSREWQSILDSEIGQLE-EFERGLLPPLLLSYNDMPSVIKWSFS-YCAIFPKDYNIEKDELIKLWLAQGYIRPKENKEL 391 (854)
Q Consensus 314 ~~~~~w~~~~~~~~~~~~-~~~~~v~~~l~~sy~~L~~~~k~cf~-~~s~fp~~~~i~~~~li~~Wia~g~i~~~~~~~~ 391 (854)
.|...... .... ..-......+...+..|++..+..+. ....|+.+ .+..+.+.... | ..
T Consensus 228 ----~~a~~~~~--~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g--------~~ 289 (328)
T PRK00080 228 ----DFAQVKGD--GVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---G--------EE 289 (328)
T ss_pred ----HHHHHcCC--CCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---C--------CC
Confidence 22211100 0000 01112334456778889988888775 67778766 45555543332 1 11
Q ss_pred HHHHHHHHH-HHHhcccccccc
Q 003037 392 EMIVEEYFD-YLAARSFFQEFE 412 (854)
Q Consensus 392 e~~~~~~l~-~L~~~sli~~~~ 412 (854)
.+.+++.++ .|++.+||+...
T Consensus 290 ~~~~~~~~e~~Li~~~li~~~~ 311 (328)
T PRK00080 290 RDTIEDVYEPYLIQQGFIQRTP 311 (328)
T ss_pred cchHHHHhhHHHHHcCCcccCC
Confidence 233455566 899999997443
No 28
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.24 E-value=4.3e-11 Score=122.70 Aligned_cols=194 Identities=22% Similarity=0.163 Sum_probs=101.2
Q ss_pred cccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHH---
Q 003037 99 VRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAI--- 175 (854)
Q Consensus 99 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i--- 175 (854)
|+||++|+++|.+++... ..+.+.|+|+.|+|||+|++.+.+.. ...-..++|+........ .....+
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~~--~~~~~~~~y~~~~~~~~~-~~~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINEL--KEKGYKVVYIDFLEESNE-SSLRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHC--T--EECCCHHCCTTBSHH-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHHh--hhcCCcEEEEecccchhh-hHHHHHHHH
Confidence 799999999999988632 35678899999999999999999842 221114445554443322 222222
Q ss_pred -------HHHhc----CCCC------CCccHHHHHHHHHHHhc--CCeEEEEEecCCCcC------hhhHHHHHHhhcC-
Q 003037 176 -------IEALE----GSTP------SLGELNSLLERIYASIA--RKKFLLVLDDVWTED------YNKWETFQRCLKN- 229 (854)
Q Consensus 176 -------~~~l~----~~~~------~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~~~l~~~l~~- 229 (854)
.+.+. .... ...........+.+.+. +++++||+||+..-. ..-...+...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL 151 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhc
Confidence 11121 1100 11122222333333332 345999999984422 1222334444443
Q ss_pred --CCCCcEEEEecccHHHHhh--------ccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCC
Q 003037 230 --GLRGSKILVTTRKMTVAQM--------MQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGL 299 (854)
Q Consensus 230 --~~~gs~ilvTtR~~~v~~~--------~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~Gl 299 (854)
..+.+ +|++......... ......+.+++|+.+++++++...+... . .- +.-.+..++|++.+||+
T Consensus 152 ~~~~~~~-~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~-~~-~~~~~~~~~i~~~~gG~ 227 (234)
T PF01637_consen 152 LSQQNVS-IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-I-KL-PFSDEDIEEIYSLTGGN 227 (234)
T ss_dssp ---TTEE-EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-
T ss_pred cccCCce-EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-h-cc-cCCHHHHHHHHHHhCCC
Confidence 33334 4444444433322 1223469999999999999999865322 1 11 22345568899999999
Q ss_pred cHHHHH
Q 003037 300 PLAAKT 305 (854)
Q Consensus 300 PLai~~ 305 (854)
|..|..
T Consensus 228 P~~l~~ 233 (234)
T PF01637_consen 228 PRYLQE 233 (234)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 998864
No 29
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.19 E-value=8.3e-10 Score=117.78 Aligned_cols=275 Identities=16% Similarity=0.113 Sum_probs=142.2
Q ss_pred CccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHH
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAII 176 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 176 (854)
.+|||+++.+++|..++...... ......+.|+|++|+|||+||+.+++. ....+ ..+..+...... .+...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~-~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~---~~~~~~~~~~~~-~l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMR-QEALDHLLLYGPPGLGKTTLAHIIANE--MGVNL---KITSGPALEKPG-DLAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCE---EEeccchhcCch-hHHHHH
Confidence 47999999999999888643221 124556889999999999999999984 22222 112111111111 122222
Q ss_pred HHhcCCC------CCCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccHHHHhhcc
Q 003037 177 EALEGST------PSLGELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKMTVAQMMQ 250 (854)
Q Consensus 177 ~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~ 250 (854)
..+.... .+... ....+.+...+.+.+..+|+|+..+.. .+ . ....+.+-|..||+...+...+.
T Consensus 77 ~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~--~~---~---~~~~~~~li~~t~~~~~l~~~l~ 147 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSAR--SV---R---LDLPPFTLVGATTRAGMLTSPLR 147 (305)
T ss_pred HhcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCcccc--ce---e---ecCCCeEEEEecCCccccCHHHH
Confidence 2221110 00000 011222333333334444444432210 00 0 01112445556777644333211
Q ss_pred --CcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHHHhhhccCCCHHHHHHHHhhhcC
Q 003037 251 --SNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTIGSLLRFKRSSREWQSILDSEIG 328 (854)
Q Consensus 251 --~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~l~~~~~~~~w~~~~~~~~~ 328 (854)
....+.+.+++.++..+++.+.+..... ....+.+..|++.|+|.|-.+..+...+ |.........
T Consensus 148 sR~~~~~~l~~l~~~e~~~il~~~~~~~~~----~~~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~ 215 (305)
T TIGR00635 148 DRFGIILRLEFYTVEELAEIVSRSAGLLNV----EIEPEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQK 215 (305)
T ss_pred hhcceEEEeCCCCHHHHHHHHHHHHHHhCC----CcCHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCC
Confidence 1346789999999999999987753222 1223456779999999997665554432 1111000000
Q ss_pred Ccc-ccccCccchhhcccCCChHHHHHHHh-hhhcCCCCceechHHHHHHHHHhCcccCCCCchHHHHHHHHHH-HHHhc
Q 003037 329 QLE-EFERGLLPPLLLSYNDMPSVIKWSFS-YCAIFPKDYNIEKDELIKLWLAQGYIRPKENKELEMIVEEYFD-YLAAR 405 (854)
Q Consensus 329 ~~~-~~~~~v~~~l~~sy~~L~~~~k~cf~-~~s~fp~~~~i~~~~li~~Wia~g~i~~~~~~~~e~~~~~~l~-~L~~~ 405 (854)
... ..-......+...|..++++.+..+. .++.++.+ .+..+.+.... |. ....++..++ .|+++
T Consensus 216 ~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g~--------~~~~~~~~~e~~Li~~ 283 (305)
T TIGR00635 216 IINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---GE--------DADTIEDVYEPYLLQI 283 (305)
T ss_pred CcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---CC--------CcchHHHhhhHHHHHc
Confidence 000 00011222256678889998887776 55777544 34443333222 11 1234566677 69999
Q ss_pred cccccc
Q 003037 406 SFFQEF 411 (854)
Q Consensus 406 sli~~~ 411 (854)
+||...
T Consensus 284 ~li~~~ 289 (305)
T TIGR00635 284 GFLQRT 289 (305)
T ss_pred CCcccC
Confidence 999643
No 30
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.16 E-value=9e-13 Score=133.54 Aligned_cols=104 Identities=26% Similarity=0.267 Sum_probs=81.1
Q ss_pred CceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccc-cccccccCCCceeeecC-CCCcccchh-h
Q 003037 482 KLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEI-PKEIKKLIHLRFLKLVW-LDIEELPET-C 558 (854)
Q Consensus 482 ~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~l-P~~i~~L~~L~~L~L~~-~~i~~lP~~-i 558 (854)
.-..+.+..|. +..+++..|+.+++||.|||++|. |..+ |..|..|..|-.|-+.+ |.|+.+|+. +
T Consensus 68 ~tveirLdqN~---I~~iP~~aF~~l~~LRrLdLS~N~--------Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F 136 (498)
T KOG4237|consen 68 ETVEIRLDQNQ---ISSIPPGAFKTLHRLRRLDLSKNN--------ISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF 136 (498)
T ss_pred cceEEEeccCC---cccCChhhccchhhhceecccccc--------hhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh
Confidence 34567777777 677778889999999999999998 7776 78888888887776665 789999974 7
Q ss_pred hcCCCCcEEeecCccccccccc-ccccCCCCcccCceeec
Q 003037 559 CELFNVQTLEVLDCRSFRRLPQ-GFGKLVNLRNLSKFIVS 597 (854)
Q Consensus 559 ~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~~~~~~ 597 (854)
++|..||.|.+.-|. +..++. .+..|++|..|..++..
T Consensus 137 ~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~ 175 (498)
T KOG4237|consen 137 GGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNK 175 (498)
T ss_pred hhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchh
Confidence 889999999998887 555554 46788888888666543
No 31
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.07 E-value=2.3e-08 Score=113.08 Aligned_cols=214 Identities=11% Similarity=0.074 Sum_probs=132.1
Q ss_pred cCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhcccc---ccccC--eeEEEEeCCccCHH
Q 003037 95 DVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDV---INHFE--KRIWVCVSDPFDEF 169 (854)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~f~--~~~wv~~s~~~~~~ 169 (854)
.|+.+.|||+|+++|...|...-.+ .....++.|+|++|.|||++++.|.+.... ..... .+++|.+....+..
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkg-sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~ 831 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQ-SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPN 831 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhc-CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHH
Confidence 3578999999999999988754321 223467889999999999999999874211 11111 45677777777888
Q ss_pred HHHHHHHHHhcCCCC-CCccHHHHHHHHHHHhc---CCeEEEEEecCCCcChhhHHHHHHhhcC-CCCCcEEEE--eccc
Q 003037 170 RIAKAIIEALEGSTP-SLGELNSLLERIYASIA---RKKFLLVLDDVWTEDYNKWETFQRCLKN-GLRGSKILV--TTRK 242 (854)
Q Consensus 170 ~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~---~k~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~ilv--TtR~ 242 (854)
.++..|.+++....+ ...........+...+. +...+||||++..-....-+.|...+.+ ...+++|+| +|..
T Consensus 832 sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNd 911 (1164)
T PTZ00112 832 AAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNT 911 (1164)
T ss_pred HHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCc
Confidence 899999999854432 22233344455555442 2346899999954221121223333332 224556544 3322
Q ss_pred HH--------HHhhccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHHHhhh
Q 003037 243 MT--------VAQMMQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTIGSLL 310 (854)
Q Consensus 243 ~~--------v~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~l 310 (854)
.. +...+. ...+...|.+.++..+++..++...........++-+|+.+++..|-.-.||.++-...
T Consensus 912 lDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 912 MDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 11 111121 23467799999999999998875432224455666666766666666777777665444
No 32
>PF05729 NACHT: NACHT domain
Probab=99.05 E-value=1.8e-09 Score=104.03 Aligned_cols=143 Identities=17% Similarity=0.235 Sum_probs=88.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHhccccccc----cCeeEEEEeCCccCHH---HHHHHHHHHhcCCCCCCccHHHHHHHHH
Q 003037 125 QVISLVGMGGIGKTTLAQFAYNNNDVINH----FEKRIWVCVSDPFDEF---RIAKAIIEALEGSTPSLGELNSLLERIY 197 (854)
Q Consensus 125 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~s~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 197 (854)
|++.|+|.+|+||||+++.++.+...... +...+|++........ .+...+..+..... ..... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHH---HHH
Confidence 57899999999999999999875332222 3456677665543322 33333333332221 11111 122
Q ss_pred HH-hcCCeEEEEEecCCCcCh--h-----hHHHHH-HhhcC-CCCCcEEEEecccHHH---HhhccCcceEecCCCCHHH
Q 003037 198 AS-IARKKFLLVLDDVWTEDY--N-----KWETFQ-RCLKN-GLRGSKILVTTRKMTV---AQMMQSNDVILIRELSEQA 264 (854)
Q Consensus 198 ~~-l~~k~~LlVlDdv~~~~~--~-----~~~~l~-~~l~~-~~~gs~ilvTtR~~~v---~~~~~~~~~~~l~~L~~~e 264 (854)
.. .+.++++||+|++.+-.. . .+..+. ..+.. ..++++++||+|.... .........+.+.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 21 257899999999844211 1 233333 33333 3578999999998765 3334445689999999999
Q ss_pred HHHHHHHHh
Q 003037 265 CWSLFEQLA 273 (854)
Q Consensus 265 ~~~l~~~~~ 273 (854)
..+++.++.
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999997753
No 33
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.03 E-value=6.6e-09 Score=123.60 Aligned_cols=314 Identities=17% Similarity=0.130 Sum_probs=179.4
Q ss_pred ccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeE---EEEeCCcc---CHHHH
Q 003037 98 EVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRI---WVCVSDPF---DEFRI 171 (854)
Q Consensus 98 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~---wv~~s~~~---~~~~~ 171 (854)
.++||+.+++.|...+..... +...++.|.|..|||||+|+++|... +.+.+...+ +-....+. ...+.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~---g~~~~~lv~G~sGIGKsalv~ev~~~--i~~~~~~~i~~~f~q~~~~ipl~~lvq~ 75 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSK---GRGEVVLVAGESGIGKSALVNEVHKP--ITQQRGYFIKGKFDQFERNIPLSPLVQA 75 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhC---CCeEEEEEeecCCCcHHHHHHHHHHH--HhccceeeeHhhcccccCCCchHHHHHH
Confidence 379999999999999987764 46779999999999999999999884 333321111 11111111 12223
Q ss_pred HHHHHHHh-------------------cCCCCC----------------------CccHH-----HHHHHHHHHh-cCCe
Q 003037 172 AKAIIEAL-------------------EGSTPS----------------------LGELN-----SLLERIYASI-ARKK 204 (854)
Q Consensus 172 ~~~i~~~l-------------------~~~~~~----------------------~~~~~-----~~~~~l~~~l-~~k~ 204 (854)
++++..++ +..... ....+ ..+..+.... +.++
T Consensus 76 ~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~p 155 (849)
T COG3899 76 FRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHP 155 (849)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCC
Confidence 33333333 111000 00000 1122222333 3569
Q ss_pred EEEEEecCCCcChhhHHHHHHhhcCCCC----CcEE--EEecccH--HHHhhccCcceEecCCCCHHHHHHHHHHHhcCC
Q 003037 205 FLLVLDDVWTEDYNKWETFQRCLKNGLR----GSKI--LVTTRKM--TVAQMMQSNDVILIRELSEQACWSLFEQLAFFG 276 (854)
Q Consensus 205 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~----gs~i--lvTtR~~--~v~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~ 276 (854)
.++|+||++..|....+-+........- ...| +.|.+.. ...........+.|.||+..+...+........
T Consensus 156 lVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~ 235 (849)
T COG3899 156 LVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT 235 (849)
T ss_pred eEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc
Confidence 9999999966555555444433332210 1122 2333322 111222335689999999999999998875321
Q ss_pred CCCCCchHHHHHHHHHHhhcCCCcHHHHHHHhhhccC------CCHHHHHHHHhhhcCCccccccCccchhhcccCCChH
Q 003037 277 RPRSECEQLIEIGRKIVGKCKGLPLAAKTIGSLLRFK------RSSREWQSILDSEIGQLEEFERGLLPPLLLSYNDMPS 350 (854)
Q Consensus 277 ~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~l~~~------~~~~~w~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~ 350 (854)
.....+....|+++..|+|+.+..+-..+... .+...|..-..+ ....... +.|...+..-.+.||.
T Consensus 236 -----~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~-i~~~~~~-~~vv~~l~~rl~kL~~ 308 (849)
T COG3899 236 -----KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS-LGILATT-DAVVEFLAARLQKLPG 308 (849)
T ss_pred -----ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh-cCCchhh-HHHHHHHHHHHhcCCH
Confidence 22334567789999999999999988777653 233344322111 1111111 2255567888999999
Q ss_pred HHHHHHhhhhcCCCCceechHHHHHHHHHhCcccCCCCchHHHHHHHHHHHHHhccccccccccCCCCeEeEE---Eech
Q 003037 351 VIKWSFSYCAIFPKDYNIEKDELIKLWLAQGYIRPKENKELEMIVEEYFDYLAARSFFQEFEREHTEGLVVRC---KMHD 427 (854)
Q Consensus 351 ~~k~cf~~~s~fp~~~~i~~~~li~~Wia~g~i~~~~~~~~e~~~~~~l~~L~~~sli~~~~~~~~~~~~~~~---~mHd 427 (854)
..+..+-..|++- ..|+...|...|-. .....+....+.|....++-..+....+...... ..||
T Consensus 309 ~t~~Vl~~AA~iG--~~F~l~~La~l~~~----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~ 376 (849)
T COG3899 309 TTREVLKAAACIG--NRFDLDTLAALAED----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHD 376 (849)
T ss_pred HHHHHHHHHHHhC--ccCCHHHHHHHHhh----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHH
Confidence 9999999999995 44556666655532 2344555556666655555433222111111011 4688
Q ss_pred hHHHHHHH
Q 003037 428 IVHDFAQY 435 (854)
Q Consensus 428 lv~~~a~~ 435 (854)
++++.|-.
T Consensus 377 ~vqqaaY~ 384 (849)
T COG3899 377 RVQQAAYN 384 (849)
T ss_pred HHHHHHhc
Confidence 88887754
No 34
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.00 E-value=7.4e-11 Score=127.23 Aligned_cols=69 Identities=19% Similarity=0.241 Sum_probs=36.4
Q ss_pred hhhcCCCcccEEEecCCCCccccccccccccccccccCCCceeeecCCCCcc-------cchhhhcCCCCcEEeecCcc
Q 003037 502 VLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIEE-------LPETCCELFNVQTLEVLDCR 573 (854)
Q Consensus 502 ~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~~-------lP~~i~~L~~L~~L~l~~~~ 573 (854)
..+..+.+|+.|+++++...... ...++..+...+.|++|+++++.+.. ++..+.++.+|+.|++++|.
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~---~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 92 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEA---AKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA 92 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHH---HHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCC
Confidence 33455555666666666510000 12344455555666666666655442 23345556666666666665
No 35
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.96 E-value=5.9e-11 Score=120.60 Aligned_cols=123 Identities=23% Similarity=0.289 Sum_probs=101.6
Q ss_pred ccCceEEEEeeeCCCC-C-CcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecC-CCCccccccccccccc
Q 003037 457 SVEKVRHSMLKLGYDS-F-PDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITG-ISGEKRYFRIIVEIPK 533 (854)
Q Consensus 457 ~~~~~r~l~l~~~~~~-~-~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~-~~~~~~~~~~i~~lP~ 533 (854)
.|.....+.+..+.+. + +..|..+++||.|+++.|. +..+-|+.|.+++.|..|-+.+ |. |+++|.
T Consensus 65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~---Is~I~p~AF~GL~~l~~Lvlyg~Nk--------I~~l~k 133 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN---ISFIAPDAFKGLASLLSLVLYGNNK--------ITDLPK 133 (498)
T ss_pred CCCcceEEEeccCCcccCChhhccchhhhceecccccc---hhhcChHhhhhhHhhhHHHhhcCCc--------hhhhhh
Confidence 4667777778777766 3 3567889999999999999 6677799999999999888888 55 999985
Q ss_pred -cccccCCCceeeecCCCCcccch-hhhcCCCCcEEeecCccccccccc-ccccCCCCccc
Q 003037 534 -EIKKLIHLRFLKLVWLDIEELPE-TCCELFNVQTLEVLDCRSFRRLPQ-GFGKLVNLRNL 591 (854)
Q Consensus 534 -~i~~L~~L~~L~L~~~~i~~lP~-~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L 591 (854)
.|++|..|+-|.+.-|.+..++. .+..|++|..|.+..|. ++.++. .+..+..++++
T Consensus 134 ~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tl 193 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTL 193 (498)
T ss_pred hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchH
Confidence 57899999999999999987764 67899999999999988 788887 46677777766
No 36
>PRK06893 DNA replication initiation factor; Validated
Probab=98.86 E-value=3.6e-08 Score=99.67 Aligned_cols=154 Identities=13% Similarity=0.160 Sum_probs=95.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCC
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIARK 203 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 203 (854)
.+.+.|+|++|+|||+||+.+++. .......+.|+.+... .....+ +.+.+. +
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~---~~~~~~---------------------~~~~~~-~ 91 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKS---QYFSPA---------------------VLENLE-Q 91 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHh---hhhhHH---------------------HHhhcc-c
Confidence 457899999999999999999985 3333345567765421 000001 111122 3
Q ss_pred eEEEEEecCCCcC-hhhHHH-HHHhhcCC-CCCcEEE-Eeccc---------HHHHhhccCcceEecCCCCHHHHHHHHH
Q 003037 204 KFLLVLDDVWTED-YNKWET-FQRCLKNG-LRGSKIL-VTTRK---------MTVAQMMQSNDVILIRELSEQACWSLFE 270 (854)
Q Consensus 204 ~~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~il-vTtR~---------~~v~~~~~~~~~~~l~~L~~~e~~~l~~ 270 (854)
.-+|||||+|... ...|+. +...+... ..|..+| +|++. +.+...+.....+++++++.++.++++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 3589999998632 245553 44444322 2355554 45543 3555556666789999999999999999
Q ss_pred HHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHHHh
Q 003037 271 QLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTIGS 308 (854)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~ 308 (854)
+.+...+-..+ +++..-|++++.|..-++..+-.
T Consensus 172 ~~a~~~~l~l~----~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 172 RNAYQRGIELS----DEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HHHHHcCCCCC----HHHHHHHHHhccCCHHHHHHHHH
Confidence 88864332122 45566688888887766655443
No 37
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.84 E-value=2e-09 Score=116.09 Aligned_cols=214 Identities=19% Similarity=0.143 Sum_probs=111.9
Q ss_pred cccCCCceEEEEecCCCCc---ccCchhhhhcCCCcccEEEecCCCCccccccccc-cccccccccCC---CceeeecCC
Q 003037 477 IFSAKKLRSFLIHSTNKDL---ISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIV-EIPKEIKKLIH---LRFLKLVWL 549 (854)
Q Consensus 477 ~~~~~~Lr~L~l~~~~~~~---~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~-~lP~~i~~L~~---L~~L~L~~~ 549 (854)
+...+.++.|.+.++.... ....++..+.++++|+.|++++|. +. ..+..+..+.+ |++|++++|
T Consensus 47 l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--------~~~~~~~~~~~l~~~~~L~~L~ls~~ 118 (319)
T cd00116 47 LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA--------LGPDGCGVLESLLRSSSLQELKLNNN 118 (319)
T ss_pred HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCC--------CChhHHHHHHHHhccCcccEEEeeCC
Confidence 3344456666655544210 001123345556666666666665 22 23333333333 666666666
Q ss_pred CCc-----ccchhhhcC-CCCcEEeecCccccc-----ccccccccCCCCcccCceeecCCCCCCcccccccccCCceeE
Q 003037 550 DIE-----ELPETCCEL-FNVQTLEVLDCRSFR-----RLPQGFGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLK 618 (854)
Q Consensus 550 ~i~-----~lP~~i~~L-~~L~~L~l~~~~~l~-----~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~ 618 (854)
.+. .++..+..+ ++|+.|++++|. +. .++..+..+++|++| .
T Consensus 119 ~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L--------------------------~ 171 (319)
T cd00116 119 GLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANRDLKEL--------------------------N 171 (319)
T ss_pred ccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEE--------------------------E
Confidence 654 223344455 666666666665 32 222223333344433 2
Q ss_pred EecccCCCC-hhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCchhh-c--
Q 003037 619 IQGLGNVRD-ADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWIV-S-- 694 (854)
Q Consensus 619 i~~l~~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~-~-- 694 (854)
+.+. .+.. ........+...++|+.|+++.+.. .......+...+..+++|++|++ +++.....-+..+. .
T Consensus 172 l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i---~~~~~~~l~~~~~~~~~L~~L~l-s~n~l~~~~~~~l~~~~~ 246 (319)
T cd00116 172 LANN-GIGDAGIRALAEGLKANCNLEVLDLNNNGL---TDEGASALAETLASLKSLEVLNL-GDNNLTDAGAAALASALL 246 (319)
T ss_pred CcCC-CCchHHHHHHHHHHHhCCCCCEEeccCCcc---ChHHHHHHHHHhcccCCCCEEec-CCCcCchHHHHHHHHHHh
Confidence 2221 1111 1122334455667899999987721 11122344556677889999999 55543220111122 2
Q ss_pred --ccCccEEEEecccCCC----CC-CCCCCCCCCCEEEEcCCC
Q 003037 695 --LNKLKKLVLYQFYLCD----TM-PPLGKLPSLEILEIRGNW 730 (854)
Q Consensus 695 --l~~L~~L~L~~~~~~~----~l-~~l~~L~~L~~L~L~~~~ 730 (854)
.++|++|++++|.+.. .+ ..+..+++|++|++++|.
T Consensus 247 ~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 247 SPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred ccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 3789999999997652 11 125566899999999887
No 38
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.83 E-value=1.8e-08 Score=103.92 Aligned_cols=171 Identities=18% Similarity=0.186 Sum_probs=102.9
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAI 175 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 175 (854)
..+++|.+..+.++++ .+...-..+||++|+||||||+.+... ....| ..++-..+-.+-++.+
T Consensus 29 Q~HLlg~~~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~~--~~~~f-----~~~sAv~~gvkdlr~i 92 (436)
T COG2256 29 QEHLLGEGKPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAGT--TNAAF-----EALSAVTSGVKDLREI 92 (436)
T ss_pred hHhhhCCCchHHHHHh---------cCCCceeEEECCCCCCHHHHHHHHHHh--hCCce-----EEeccccccHHHHHHH
Confidence 3445555555555544 346677889999999999999999883 44444 3333333222223333
Q ss_pred HHHhcCCCCCCccHHHHHHHH-HHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEE--ecccHHH---Hhhc
Q 003037 176 IEALEGSTPSLGELNSLLERI-YASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILV--TTRKMTV---AQMM 249 (854)
Q Consensus 176 ~~~l~~~~~~~~~~~~~~~~l-~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~v---~~~~ 249 (854)
++ .- .....+++.+|++|.|+.-+..+-+.++..+. .|.-|+| ||-++.. ....
T Consensus 93 ~e-----------------~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~ALl 152 (436)
T COG2256 93 IE-----------------EARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPALL 152 (436)
T ss_pred HH-----------------HHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHHHh
Confidence 32 22 22335899999999998765555555555443 4666665 5555431 1223
Q ss_pred cCcceEecCCCCHHHHHHHHHHHhcCCCCCCC--ch-HHHHHHHHHHhhcCCCcHH
Q 003037 250 QSNDVILIRELSEQACWSLFEQLAFFGRPRSE--CE-QLIEIGRKIVGKCKGLPLA 302 (854)
Q Consensus 250 ~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~--~~-~~~~~~~~I~~~~~GlPLa 302 (854)
+...++.+++|+.+|..+++.+.+......-. .. ..++.-..|++.++|---+
T Consensus 153 SR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 153 SRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred hhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 44679999999999999999884321111111 11 1233455678888886543
No 39
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.83 E-value=5.3e-08 Score=107.76 Aligned_cols=179 Identities=18% Similarity=0.199 Sum_probs=108.0
Q ss_pred CCccccchhHHHH---HHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHH
Q 003037 96 VSEVRGRDEEKNT---LKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIA 172 (854)
Q Consensus 96 ~~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 172 (854)
-+++||++..+.. +..++.. .....+.|+|++|+||||||+.+++. .... |+.++........+
T Consensus 11 l~d~vGq~~~v~~~~~L~~~i~~------~~~~~ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~a~~~~~~~i 77 (413)
T PRK13342 11 LDEVVGQEHLLGPGKPLRRMIEA------GRLSSMILWGPPGTGKTTLARIIAGA--TDAP-----FEALSAVTSGVKDL 77 (413)
T ss_pred HHHhcCcHHHhCcchHHHHHHHc------CCCceEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecccccHHHH
Confidence 3568898887655 7776652 34557889999999999999999884 2222 23332221111112
Q ss_pred HHHHHHhcCCCCCCccHHHHHHHHHHH-hcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEE--ecccHH--HH-
Q 003037 173 KAIIEALEGSTPSLGELNSLLERIYAS-IARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILV--TTRKMT--VA- 246 (854)
Q Consensus 173 ~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~--v~- 246 (854)
+.+++ ..... ..+++.+|++|+++.-.....+.+...+.. |..++| ||.+.. +.
T Consensus 78 r~ii~-----------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~ 137 (413)
T PRK13342 78 REVIE-----------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNP 137 (413)
T ss_pred HHHHH-----------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccH
Confidence 22221 11111 245788999999987655566666666543 444444 344432 11
Q ss_pred hhccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHHHh
Q 003037 247 QMMQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTIGS 308 (854)
Q Consensus 247 ~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~ 308 (854)
........+.+.+++.++...++.+.+....... .....+..+.|++.|+|.|..+..+..
T Consensus 138 aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 138 ALLSRAQVFELKPLSEEDIEQLLKRALEDKERGL-VELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred HHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 1223346899999999999999988653211100 022245567789999999977655443
No 40
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.78 E-value=2.2e-08 Score=92.05 Aligned_cols=118 Identities=20% Similarity=0.224 Sum_probs=81.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccc---cccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHH
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVI---NHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYAS 199 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 199 (854)
+.+++.|+|.+|+|||++++.+.++.... ..-..++|+.+....+...+...++++++.......+.+.+...+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 46789999999999999999998852110 003466799998888999999999999988766656677777888888
Q ss_pred hcCCe-EEEEEecCCCc-ChhhHHHHHHhhcCCCCCcEEEEeccc
Q 003037 200 IARKK-FLLVLDDVWTE-DYNKWETFQRCLKNGLRGSKILVTTRK 242 (854)
Q Consensus 200 l~~k~-~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~ 242 (854)
+...+ .+||+|++..- +...++.+..... ..+.+||+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 87654 59999999554 4344455544333 566778777664
No 41
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.75 E-value=6.4e-07 Score=97.25 Aligned_cols=182 Identities=14% Similarity=0.161 Sum_probs=112.4
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccc-------------------cCe
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINH-------------------FEK 156 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~ 156 (854)
-.+++|.+..++.+...+.... -...+.++|+.|+||||+|+.+++...-... +..
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d 89 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLD 89 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCc
Confidence 4679999999999999886432 3456789999999999999999874211000 111
Q ss_pred eEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHH-hcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcE
Q 003037 157 RIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYAS-IARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSK 235 (854)
Q Consensus 157 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 235 (854)
..++..+....+. ..+++.+ .+... ..+++-++|+|++..-....++.+...+.......+
T Consensus 90 ~~~~~~~~~~~v~-~ir~i~~-----------------~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~ 151 (363)
T PRK14961 90 LIEIDAASRTKVE-EMREILD-----------------NIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIK 151 (363)
T ss_pred eEEecccccCCHH-HHHHHHH-----------------HHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 1122111101111 1111111 11100 124566999999976665678888888877666777
Q ss_pred EEEecccH-HHHhh-ccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHH
Q 003037 236 ILVTTRKM-TVAQM-MQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAK 304 (854)
Q Consensus 236 ilvTtR~~-~v~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~ 304 (854)
+|++|.+. .+... .+....+++.+++.++..+.+...+...+. ....+.+..|++.++|.|-.+.
T Consensus 152 fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~----~i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 152 FILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI----DTDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred EEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 77776543 33222 233568999999999999988876543221 1123456678889999886443
No 42
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.74 E-value=1.7e-07 Score=95.23 Aligned_cols=172 Identities=16% Similarity=0.141 Sum_probs=101.7
Q ss_pred chhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcC
Q 003037 102 RDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEG 181 (854)
Q Consensus 102 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 181 (854)
.+..++.+..++.. .....+.|+|++|+|||+||+.+++. ........++++++.-.+. ...+
T Consensus 22 ~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~~---~~~~------ 84 (226)
T TIGR03420 22 NAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQA---DPEV------ 84 (226)
T ss_pred cHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHHh---HHHH------
Confidence 44567777776542 24667899999999999999999985 2223334556655432110 0011
Q ss_pred CCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcChh-hH-HHHHHhhcC-CCCCcEEEEecccHH---------HHhhc
Q 003037 182 STPSLGELNSLLERIYASIARKKFLLVLDDVWTEDYN-KW-ETFQRCLKN-GLRGSKILVTTRKMT---------VAQMM 249 (854)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~-~~-~~l~~~l~~-~~~gs~ilvTtR~~~---------v~~~~ 249 (854)
...+.+ .-+|||||++.-... .| +.+...+.. ...+.++|+||+... +...+
T Consensus 85 ---------------~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 85 ---------------LEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred ---------------Hhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHH
Confidence 111222 238999999653221 23 334444332 123447888887532 12222
Q ss_pred cCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHHHhhh
Q 003037 250 QSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTIGSLL 310 (854)
Q Consensus 250 ~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~l 310 (854)
.....+++.+++.++...++...+...... --.+..+.|++.+.|+|..+..+...+
T Consensus 149 ~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~----~~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 149 AWGLVFQLPPLSDEEKIAALQSRAARRGLQ----LPDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred hcCeeEecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 224579999999999999988754322211 123455667778999998877664433
No 43
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=5.3e-07 Score=96.17 Aligned_cols=180 Identities=13% Similarity=0.154 Sum_probs=119.7
Q ss_pred CccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhcc----ccccccCeeEEEEe-CCccCHHHH
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNN----DVINHFEKRIWVCV-SDPFDEFRI 171 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~----~~~~~f~~~~wv~~-s~~~~~~~~ 171 (854)
.+++|.+..++.+..++.... -.....++|+.|+||||+|+.+++.. ....|.|...|... +....+++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-----~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-----FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 468999999999999986432 35677899999999999999888731 12345565555442 22222222
Q ss_pred HHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccHHHH--hhc
Q 003037 172 AKAIIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKMTVA--QMM 249 (854)
Q Consensus 172 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~--~~~ 249 (854)
.+++.+.+...+ ..+++-++|+|++...+...+..+...+...+.++.+|++|.+.+.. +..
T Consensus 78 ir~~~~~~~~~p----------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 78 IRNIIEEVNKKP----------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHHHHHhcCc----------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 222333222111 12556678888886666678999999999888889998888765422 122
Q ss_pred cCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHH
Q 003037 250 QSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTI 306 (854)
Q Consensus 250 ~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~ 306 (854)
+....+.+.+++.++....+.+...+ .. .+.++.++..++|.|.-+...
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~~----~~----~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYND----IK----EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhcC----CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 33578999999999998888664310 11 233667888999998765433
No 44
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.74 E-value=3.1e-07 Score=88.79 Aligned_cols=184 Identities=19% Similarity=0.241 Sum_probs=102.5
Q ss_pred cCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHH
Q 003037 95 DVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKA 174 (854)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 174 (854)
.-.+|||.++-++.+.-.+...... .+...-+.+||++|+||||||.-+++. ....|. +.+... .+-.
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r-~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~---~~sg~~-i~k~----- 89 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKR-GEALDHMLFYGPPGLGKTTLARIIANE--LGVNFK---ITSGPA-IEKA----- 89 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCT-TS---EEEEESSTTSSHHHHHHHHHHH--CT--EE---EEECCC---SC-----
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhc-CCCcceEEEECCCccchhHHHHHHHhc--cCCCeE---eccchh-hhhH-----
Confidence 3578999999988876655432110 235778899999999999999999994 444441 222211 1100
Q ss_pred HHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCC--------CCc-----------E
Q 003037 175 IIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGL--------RGS-----------K 235 (854)
Q Consensus 175 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~--------~gs-----------~ 235 (854)
.++...+.. + +++-+|++|.++.-+..+-+.+...+.++. .++ -
T Consensus 90 ---------------~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 90 ---------------GDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp ---------------HHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred ---------------HHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 111111111 2 245578889998766656666666665431 111 1
Q ss_pred EEEecccHHHHhhccCc--ceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHHHhhhc
Q 003037 236 ILVTTRKMTVAQMMQSN--DVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTIGSLLR 311 (854)
Q Consensus 236 ilvTtR~~~v~~~~~~~--~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~l~ 311 (854)
|=.|||...+...+..- -..++...+.+|-.++..+.+.. ...+-.++.+.+|++++.|-|--..-+-..++
T Consensus 153 igATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~----l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARI----LNIEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHC----TT-EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred eeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHH----hCCCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 33577765555544432 24579999999999999887642 22344467788999999999976555544443
No 45
>PRK04195 replication factor C large subunit; Provisional
Probab=98.72 E-value=1.4e-06 Score=98.57 Aligned_cols=252 Identities=14% Similarity=0.116 Sum_probs=141.4
Q ss_pred cccCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHH
Q 003037 93 LIDVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIA 172 (854)
Q Consensus 93 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 172 (854)
|..-.+++|+++.++++..|+..... ....+.+.|+|++|+||||+|+.++++. .|+ ++-++.++..+.. .+
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el----~~~-~ielnasd~r~~~-~i 81 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDY----GWE-VIELNASDQRTAD-VI 81 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHc----CCC-EEEEcccccccHH-HH
Confidence 33456799999999999999865332 1236789999999999999999999852 122 2334444432222 23
Q ss_pred HHHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcCh----hhHHHHHHhhcCCCCCcEEEEecccHH-HHh
Q 003037 173 KAIIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTEDY----NKWETFQRCLKNGLRGSKILVTTRKMT-VAQ 247 (854)
Q Consensus 173 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~ 247 (854)
..++........ ....++-+||+|+++.-.. ..+..+...+.. .+..||+|+.+.. ...
T Consensus 82 ~~~i~~~~~~~s--------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~ 145 (482)
T PRK04195 82 ERVAGEAATSGS--------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSL 145 (482)
T ss_pred HHHHHHhhccCc--------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccch
Confidence 333322211100 0113677999999965321 345666666653 2344666664321 111
Q ss_pred --hccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHHHhhhccCC---CHHHHHHH
Q 003037 248 --MMQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTIGSLLRFKR---SSREWQSI 322 (854)
Q Consensus 248 --~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~l~~~~---~~~~w~~~ 322 (854)
.......+.+.+++.++....+...+...+.... .++...|++.++|-.-.+......+.... +.+....+
T Consensus 146 k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~----~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~ 221 (482)
T PRK04195 146 RELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECD----DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTL 221 (482)
T ss_pred hhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHh
Confidence 1123568899999999999988876643332222 35567788899997766544333333221 23333222
Q ss_pred HhhhcCCccccccCccchhhcccC-CChHHHHHHHhhhhcCCCCceechHHHHHHHHHhCcccCC
Q 003037 323 LDSEIGQLEEFERGLLPPLLLSYN-DMPSVIKWSFSYCAIFPKDYNIEKDELIKLWLAQGYIRPK 386 (854)
Q Consensus 323 ~~~~~~~~~~~~~~v~~~l~~sy~-~L~~~~k~cf~~~s~fp~~~~i~~~~li~~Wia~g~i~~~ 386 (854)
.. .+...+++.++..-+. .-+......+.. ..++. ..+-.|+.+.+....
T Consensus 222 ~~------~d~~~~if~~l~~i~~~k~~~~a~~~~~~-------~~~~~-~~i~~~l~en~~~~~ 272 (482)
T PRK04195 222 GR------RDREESIFDALDAVFKARNADQALEASYD-------VDEDP-DDLIEWIDENIPKEY 272 (482)
T ss_pred hc------CCCCCCHHHHHHHHHCCCCHHHHHHHHHc-------ccCCH-HHHHHHHHhcccccc
Confidence 21 1122345666654443 222333332221 12233 357789999987653
No 46
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.71 E-value=4.3e-07 Score=98.61 Aligned_cols=200 Identities=14% Similarity=0.075 Sum_probs=112.4
Q ss_pred cCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccC-eeEEEEeCCccCH-HHHH
Q 003037 95 DVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFE-KRIWVCVSDPFDE-FRIA 172 (854)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~~~~-~~~~ 172 (854)
.-.+++|+++.++.+..++... ..+.+.|+|++|+||||+|+.+++... ...+. ..+.+++++..+. ...+
T Consensus 13 ~~~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~ 85 (337)
T PRK12402 13 LLEDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYL 85 (337)
T ss_pred cHHHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhh
Confidence 3467899999999999988632 344678999999999999999988421 11121 2334444321100 0000
Q ss_pred ---HHHHHHhcCCC-CCCccHHHHHHHHHHHh-----cCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccH
Q 003037 173 ---KAIIEALEGST-PSLGELNSLLERIYASI-----ARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKM 243 (854)
Q Consensus 173 ---~~i~~~l~~~~-~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 243 (854)
......++... ......+.....+.... .+.+-+||+||+..-.......+...+......+++|+||...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 165 (337)
T PRK12402 86 VEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQP 165 (337)
T ss_pred hcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCCh
Confidence 00000000000 00011122222222211 1345589999996544444556666665555567888887543
Q ss_pred H-HHhh-ccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHH
Q 003037 244 T-VAQM-MQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKT 305 (854)
Q Consensus 244 ~-v~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ 305 (854)
. +... ......+++.+++.++...++...+...+.. .-.+.++.+++.++|.+-.+..
T Consensus 166 ~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~----~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 166 SKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD----YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHH
Confidence 2 2121 2234578899999999999988865432221 2245667788889888765543
No 47
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.71 E-value=9.2e-07 Score=100.11 Aligned_cols=180 Identities=12% Similarity=0.111 Sum_probs=116.0
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccc-------------------cccCe
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVI-------------------NHFEK 156 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~f~~ 156 (854)
-+++||.+..++.|..++...+ -...+.++|..|+||||+|+.+.+...-. +.|..
T Consensus 15 FdEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~D 89 (830)
T PRK07003 15 FASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVD 89 (830)
T ss_pred HHHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCce
Confidence 4679999999999999987432 35566799999999999998887732111 01111
Q ss_pred eEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHH----HhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCC
Q 003037 157 RIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYA----SIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLR 232 (854)
Q Consensus 157 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 232 (854)
+++++.+... .++++.+.+.. -..++.-++|||+++......+..++..+.....
T Consensus 90 viEIDAas~r---------------------gVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~ 148 (830)
T PRK07003 90 YVEMDAASNR---------------------GVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPP 148 (830)
T ss_pred EEEecccccc---------------------cHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCC
Confidence 2222222111 12222222211 1134566899999987766778888888877667
Q ss_pred CcEEEEecccHHHH--hhccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcH-HHHH
Q 003037 233 GSKILVTTRKMTVA--QMMQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPL-AAKT 305 (854)
Q Consensus 233 gs~ilvTtR~~~v~--~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPL-ai~~ 305 (854)
..++|+||++.... ...+-...+.+++++.++..+.+.+.+...+.. ...+..+.|++.++|..- |+..
T Consensus 149 ~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~----id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 149 HVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA----FEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred CeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 78888888765422 223335789999999999999998866432221 123456678889988653 5444
No 48
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.69 E-value=6.1e-07 Score=103.58 Aligned_cols=184 Identities=14% Similarity=0.158 Sum_probs=117.6
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccc-------------------cCe
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINH-------------------FEK 156 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~ 156 (854)
-.++||.+..++.|..++...+ -...+.++|+.|+||||+|+.+++..--... |..
T Consensus 15 FddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~D 89 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVD 89 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCce
Confidence 4679999999999999887432 3455689999999999999999884211100 111
Q ss_pred eEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHH-HhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcE
Q 003037 157 RIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYA-SIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSK 235 (854)
Q Consensus 157 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 235 (854)
++++..... ....++..+...+.. ...+++-++|||+++......+..|+..+.......+
T Consensus 90 viEidAas~------------------~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vr 151 (944)
T PRK14949 90 LIEVDAASR------------------TKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVK 151 (944)
T ss_pred EEEeccccc------------------cCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeE
Confidence 112211110 111122222222221 1246778999999987777788888888887666777
Q ss_pred EEEecccH-HHHh-hccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHH
Q 003037 236 ILVTTRKM-TVAQ-MMQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTI 306 (854)
Q Consensus 236 ilvTtR~~-~v~~-~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~ 306 (854)
+|++|.+. .+.. .......+++++|+.++....+.+.+...+. ....+.+..|++.++|.|--+..+
T Consensus 152 FILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI----~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 152 FLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL----PFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred EEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 77666543 3332 2334578999999999999999876532211 122355677999999988654443
No 49
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=6.1e-07 Score=100.44 Aligned_cols=180 Identities=14% Similarity=0.129 Sum_probs=115.9
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccc-------------------cccCe
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVI-------------------NHFEK 156 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~f~~ 156 (854)
-.++||.+...+.|..++.... -...+.++|+.|+||||+|+.+++..--. +.|..
T Consensus 14 FddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpD 88 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFID 88 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCc
Confidence 4679999999999999997432 35678899999999999999988741100 01111
Q ss_pred eEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHH----HhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCC
Q 003037 157 RIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYA----SIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLR 232 (854)
Q Consensus 157 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 232 (854)
++.+..+.. ..++++.+.+.. -..++.-++|+|+++.-+......+...+.....
T Consensus 89 viEIDAAs~---------------------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~ 147 (702)
T PRK14960 89 LIEIDAASR---------------------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPE 147 (702)
T ss_pred eEEeccccc---------------------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCC
Confidence 122221111 122222221111 1235667999999977666777888888877666
Q ss_pred CcEEEEecccHH-HH-hhccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHH
Q 003037 233 GSKILVTTRKMT-VA-QMMQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKT 305 (854)
Q Consensus 233 gs~ilvTtR~~~-v~-~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ 305 (854)
+.++|++|.+.. +. ........+++++++.++..+.+.+.+...+.. ...+....|++.++|.+..+..
T Consensus 148 ~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~----id~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 148 HVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA----ADQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred CcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHH
Confidence 778887776532 22 223446789999999999999988766432221 2234556788899998755443
No 50
>PTZ00202 tuzin; Provisional
Probab=98.68 E-value=1.5e-06 Score=91.53 Aligned_cols=171 Identities=14% Similarity=0.171 Sum_probs=109.4
Q ss_pred ccccccCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHH
Q 003037 90 STSLIDVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEF 169 (854)
Q Consensus 90 ~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 169 (854)
...|.+.+.|+||++++..|...|...+. ...+++.|+|++|+|||||++.+..... + ..++++.. +..
T Consensus 255 ~~lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~e 323 (550)
T PTZ00202 255 QSAPAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTE 323 (550)
T ss_pred cCCCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHH
Confidence 34567788999999999999999975442 2457999999999999999999987422 2 12222222 679
Q ss_pred HHHHHHHHHhcCCCCCC--ccHHHHHHHHHHHh-c-CCeEEEEEecCCCcC-hhhHHHHHHhhcCCCCCcEEEEecccHH
Q 003037 170 RIAKAIIEALEGSTPSL--GELNSLLERIYASI-A-RKKFLLVLDDVWTED-YNKWETFQRCLKNGLRGSKILVTTRKMT 244 (854)
Q Consensus 170 ~~~~~i~~~l~~~~~~~--~~~~~~~~~l~~~l-~-~k~~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 244 (854)
+++..++.+|+.+.... .-.+.+.+.+.+.- . +++.+||+-=-.-++ ...+.+.. .+.....-|+|++----+.
T Consensus 324 ElLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evples 402 (550)
T PTZ00202 324 DTLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLES 402 (550)
T ss_pred HHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhh
Confidence 99999999999743221 11233444444322 2 667777765322121 12233322 2334445678887665444
Q ss_pred HHhhc---cCcceEecCCCCHHHHHHHHHHH
Q 003037 245 VAQMM---QSNDVILIRELSEQACWSLFEQL 272 (854)
Q Consensus 245 v~~~~---~~~~~~~l~~L~~~e~~~l~~~~ 272 (854)
+.... ..-+.|-+++++.++|.++..+.
T Consensus 403 lt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 403 LTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred cchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 33221 22468899999999999988764
No 51
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.68 E-value=3.8e-08 Score=96.66 Aligned_cols=48 Identities=27% Similarity=0.371 Sum_probs=32.9
Q ss_pred ccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhcc
Q 003037 98 EVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNN 148 (854)
Q Consensus 98 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 148 (854)
.||||+++++++...|.... ....+++.|+|.+|+|||+|+++++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~---~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQ---SGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTS---S-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH---cCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999996222 3467999999999999999999998853
No 52
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=1.3e-07 Score=105.82 Aligned_cols=198 Identities=16% Similarity=0.155 Sum_probs=116.3
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAI 175 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 175 (854)
-.+++|.+..++.|..++.... -...+.++|++|+||||+|+.+++...-.+.+....|.|.+-. .+.......
T Consensus 13 ~~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~-~i~~~~h~d 86 (504)
T PRK14963 13 FDEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL-AVRRGAHPD 86 (504)
T ss_pred HHHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH-HHhcCCCCc
Confidence 3578999999999998887432 3456799999999999999999875221122222333332110 000000000
Q ss_pred HHHhcCC-CCCCccHHHHHHHHHH-HhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEeccc-HHHHhh-ccC
Q 003037 176 IEALEGS-TPSLGELNSLLERIYA-SIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRK-MTVAQM-MQS 251 (854)
Q Consensus 176 ~~~l~~~-~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~-~~~ 251 (854)
+..+... .....++.++...+.. -..+++-++|+|+++......+..+...+........+|++|.. ..+... ...
T Consensus 87 v~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SR 166 (504)
T PRK14963 87 VLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSR 166 (504)
T ss_pred eEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcc
Confidence 0000000 0111112222222221 12356679999999776667788888888776556666655543 333222 233
Q ss_pred cceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHH
Q 003037 252 NDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAA 303 (854)
Q Consensus 252 ~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai 303 (854)
...+++.+++.++..+.+.+.+...+... ..+.+..|++.++|.+--+
T Consensus 167 c~~~~f~~ls~~el~~~L~~i~~~egi~i----~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 167 TQHFRFRRLTEEEIAGKLRRLLEAEGREA----EPEALQLVARLADGAMRDA 214 (504)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 56899999999999999988764332211 2455677999999988644
No 53
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.65 E-value=1.1e-06 Score=94.54 Aligned_cols=184 Identities=15% Similarity=0.102 Sum_probs=110.3
Q ss_pred ccCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEe--CCccCHHHH
Q 003037 94 IDVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCV--SDPFDEFRI 171 (854)
Q Consensus 94 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~--s~~~~~~~~ 171 (854)
..-.+++|+++.++.+..++... ..+.+.|+|..|+||||+|+.+++... ...+. ..++.+ +...... .
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~-~~~i~~~~~~~~~~~-~ 84 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELY-GEDWR-ENFLELNASDERGID-V 84 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHc-CCccc-cceEEeccccccchH-H
Confidence 33467999999999999998632 344579999999999999999988421 11121 122322 2221211 1
Q ss_pred HHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccHH-HHh-hc
Q 003037 172 AKAIIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKMT-VAQ-MM 249 (854)
Q Consensus 172 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~-~~ 249 (854)
..+.+..+....+. ....+-++++|++..-.......+...+......+++|+++.... +.. ..
T Consensus 85 ~~~~i~~~~~~~~~--------------~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~ 150 (319)
T PRK00440 85 IRNKIKEFARTAPV--------------GGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQ 150 (319)
T ss_pred HHHHHHHHHhcCCC--------------CCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHH
Confidence 11121111111000 012356899999865544556667777766556677877764321 111 11
Q ss_pred cCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHH
Q 003037 250 QSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAK 304 (854)
Q Consensus 250 ~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~ 304 (854)
.....+++.+++.++....+...+...+..-. .+.+..+++.++|.+.-+.
T Consensus 151 sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~----~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 151 SRCAVFRFSPLKKEAVAERLRYIAENEGIEIT----DDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred HHhheeeeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 22457899999999999998887643222122 3456678889999886543
No 54
>PLN03025 replication factor C subunit; Provisional
Probab=98.65 E-value=7.1e-07 Score=95.37 Aligned_cols=184 Identities=12% Similarity=0.085 Sum_probs=109.4
Q ss_pred cCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccC-eeEEEEeCCccCHHHHHH
Q 003037 95 DVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFE-KRIWVCVSDPFDEFRIAK 173 (854)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~ 173 (854)
.-.+++|.++.++.|..++.. ++.+.+.++|++|+||||+|+.+++... ...|. .++-++.++..... .++
T Consensus 11 ~l~~~~g~~~~~~~L~~~~~~------~~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~~-~vr 82 (319)
T PLN03025 11 KLDDIVGNEDAVSRLQVIARD------GNMPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGID-VVR 82 (319)
T ss_pred CHHHhcCcHHHHHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeecccccccHH-HHH
Confidence 346789999999988887753 2344577999999999999999988421 11222 12222222222221 222
Q ss_pred HHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccH-HHHh-hccC
Q 003037 174 AIIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKM-TVAQ-MMQS 251 (854)
Q Consensus 174 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~-~~~~ 251 (854)
.+++........ .-.++.-++|+|++..-.......+...+......+++++++... .+.. ....
T Consensus 83 ~~i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SR 149 (319)
T PLN03025 83 NKIKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSR 149 (319)
T ss_pred HHHHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHh
Confidence 222221110000 002456799999997655555666776666555667777776543 2211 1122
Q ss_pred cceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHH
Q 003037 252 NDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAA 303 (854)
Q Consensus 252 ~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai 303 (854)
...+++++++.++....+...+...+.... .+....|++.++|-.-.+
T Consensus 150 c~~i~f~~l~~~~l~~~L~~i~~~egi~i~----~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 150 CAIVRFSRLSDQEILGRLMKVVEAEKVPYV----PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred hhcccCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 458999999999999998877643222122 345677888898876443
No 55
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=2.2e-06 Score=91.92 Aligned_cols=209 Identities=15% Similarity=0.171 Sum_probs=132.9
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAI 175 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 175 (854)
|+.+.+|+++++++...|...-. ++.+.-+.|+|..|.|||+.++.+.+..+....=..+++|++-...+..+++..|
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i 93 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKI 93 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHH
Confidence 45599999999999988876544 2344458999999999999999999853222111127899999999999999999
Q ss_pred HHHhcCCCCCCccHHHHHHHHHHHhc--CCeEEEEEecCCCcChhhHHHHHHhhcCCCC-CcEEE--EecccHHHHhhcc
Q 003037 176 IEALEGSTPSLGELNSLLERIYASIA--RKKFLLVLDDVWTEDYNKWETFQRCLKNGLR-GSKIL--VTTRKMTVAQMMQ 250 (854)
Q Consensus 176 ~~~l~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~-gs~il--vTtR~~~v~~~~~ 250 (854)
++.++..........+....+.+.+. ++.+++|||++..-....-+.+...+..... .++|+ ..+-+......+.
T Consensus 94 ~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 94 LNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred HHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhh
Confidence 99998555545556666777777664 5789999999843211111334444443322 34443 2333322222221
Q ss_pred C-------cceEecCCCCHHHHHHHHHHHhcCC--CCCCCchHHHHHHHHHHhhcCCCcHHHHHH
Q 003037 251 S-------NDVILIRELSEQACWSLFEQLAFFG--RPRSECEQLIEIGRKIVGKCKGLPLAAKTI 306 (854)
Q Consensus 251 ~-------~~~~~l~~L~~~e~~~l~~~~~~~~--~~~~~~~~~~~~~~~I~~~~~GlPLai~~~ 306 (854)
+ ...+..+|-+.+|-.+.+..++-.. ...-....++-+|...++..|---.||.++
T Consensus 174 ~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 174 PRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 1 2347889999999999998876422 121233444444444445444555555554
No 56
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.64 E-value=2.5e-09 Score=113.92 Aligned_cols=188 Identities=22% Similarity=0.236 Sum_probs=129.5
Q ss_pred EEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccccCCCceeeecCCCCcccchhhhcCCCCc
Q 003037 486 FLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIEELPETCCELFNVQ 565 (854)
Q Consensus 486 L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~ 565 (854)
.+++.|. +.. +|..+..|-.|..|.|..|. +..+|..+++|..|.||+|+.|++..+|..++.|+ |+
T Consensus 80 aDlsrNR---~~e-lp~~~~~f~~Le~liLy~n~--------~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lk 146 (722)
T KOG0532|consen 80 ADLSRNR---FSE-LPEEACAFVSLESLILYHNC--------IRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LK 146 (722)
T ss_pred hhccccc---ccc-CchHHHHHHHHHHHHHHhcc--------ceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ce
Confidence 4445554 333 66667888888888888888 88888889999999999999999888888888775 88
Q ss_pred EEeecCcccccccccccccCCCCcccCceeecCCCCCCcccccccccCCceeEEecccCCCChhHHHHhhccCCCCCCcE
Q 003037 566 TLEVLDCRSFRRLPQGFGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLGNVRDADEAKSAELEKKKNLLDL 645 (854)
Q Consensus 566 ~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L 645 (854)
.|-+++|+ ++.+|.+|+.+..|.+|... .+ .+ ...+..+..+.+|+.|
T Consensus 147 vli~sNNk-l~~lp~~ig~~~tl~~ld~s---~n---ei-------------------------~slpsql~~l~slr~l 194 (722)
T KOG0532|consen 147 VLIVSNNK-LTSLPEEIGLLPTLAHLDVS---KN---EI-------------------------QSLPSQLGYLTSLRDL 194 (722)
T ss_pred eEEEecCc-cccCCcccccchhHHHhhhh---hh---hh-------------------------hhchHHhhhHHHHHHH
Confidence 88888887 88889888877777777221 11 00 0112334445556666
Q ss_pred EEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCchhhcccCccEEEEecccCCCCCC---CCCCCCCCC
Q 003037 646 VLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCDTMP---PLGKLPSLE 722 (854)
Q Consensus 646 ~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~---~l~~L~~L~ 722 (854)
.+..+ ....+++.+..+ .|..|++ +++.... +|-.+..|..|+.|.|.+|.+..... .-|...-.+
T Consensus 195 ~vrRn--------~l~~lp~El~~L-pLi~lDf-ScNkis~-iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFK 263 (722)
T KOG0532|consen 195 NVRRN--------HLEDLPEELCSL-PLIRLDF-SCNKISY-LPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFK 263 (722)
T ss_pred HHhhh--------hhhhCCHHHhCC-ceeeeec-ccCceee-cchhhhhhhhheeeeeccCCCCCChHHHHhccceeeee
Confidence 66655 344556666533 4777887 5555555 78888888888888888887644222 245666677
Q ss_pred EEEEcCC
Q 003037 723 ILEIRGN 729 (854)
Q Consensus 723 ~L~L~~~ 729 (854)
+|+..-|
T Consensus 264 yL~~qA~ 270 (722)
T KOG0532|consen 264 YLSTQAC 270 (722)
T ss_pred eecchhc
Confidence 7777766
No 57
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.62 E-value=3.9e-08 Score=93.24 Aligned_cols=125 Identities=22% Similarity=0.160 Sum_probs=43.4
Q ss_pred cCceEEEEeeeCCCCCCcccc-cCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccc-
Q 003037 458 VEKVRHSMLKLGYDSFPDSIF-SAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEI- 535 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i- 535 (854)
+.+.|.+.+.++.+...+.+. .+.+|++|++++|....+.+ +..++.|++|++++|. +..++..+
T Consensus 18 ~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~-----l~~L~~L~~L~L~~N~--------I~~i~~~l~ 84 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG-----LPGLPRLKTLDLSNNR--------ISSISEGLD 84 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S--TT---------TT--EEE--SS-----------S-CHHHH
T ss_pred ccccccccccccccccccchhhhhcCCCEEECCCCCCccccC-----ccChhhhhhcccCCCC--------CCccccchH
Confidence 445677777777766555555 46677777777777433222 5567777777777777 77765544
Q ss_pred cccCCCceeeecCCCCcccc--hhhhcCCCCcEEeecCccccccccc----ccccCCCCcccCceee
Q 003037 536 KKLIHLRFLKLVWLDIEELP--ETCCELFNVQTLEVLDCRSFRRLPQ----GFGKLVNLRNLSKFIV 596 (854)
Q Consensus 536 ~~L~~L~~L~L~~~~i~~lP--~~i~~L~~L~~L~l~~~~~l~~lp~----~i~~L~~L~~L~~~~~ 596 (854)
..+++|+.|++++|.|..+- ..+..+++|++|++.+|+ +...+. -+..+++|+.|+...+
T Consensus 85 ~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 85 KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEc
Confidence 35777777777777766543 245667777777777777 444432 2456677777754433
No 58
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.61 E-value=4.6e-07 Score=85.12 Aligned_cols=125 Identities=18% Similarity=0.147 Sum_probs=74.2
Q ss_pred ccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHh
Q 003037 100 RGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEAL 179 (854)
Q Consensus 100 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 179 (854)
+||+..++.+...+... ..+.+.|+|.+|+|||++|+.+++... ..-..++++...+..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 47889999999888632 356788999999999999999998532 222356667665543322221111100
Q ss_pred cCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCC------CCCcEEEEecccHH
Q 003037 180 EGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNG------LRGSKILVTTRKMT 244 (854)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~------~~gs~ilvTtR~~~ 244 (854)
............++.++|+||++.........+...+... ..+.+||+||....
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011111223456789999999753222333344433332 36778888887543
No 59
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.60 E-value=9.8e-08 Score=99.40 Aligned_cols=291 Identities=20% Similarity=0.185 Sum_probs=183.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccC-eeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFE-KRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIA 201 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 201 (854)
..+.+.++|.|||||||++-++.. +...|. .+.++....-.+...+.-.+...++-... +.+.....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~---~g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ---PGDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc---cchHHHHHHHHHHh
Confidence 578899999999999999988887 556675 55556665555666666666665654422 22344556667778
Q ss_pred CCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccHHHHhhccCcceEecCCCCHH-HHHHHHHHHhcCCCCC-
Q 003037 202 RKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKMTVAQMMQSNDVILIRELSEQ-ACWSLFEQLAFFGRPR- 279 (854)
Q Consensus 202 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l~~L~~~-e~~~l~~~~~~~~~~~- 279 (854)
+++.++|+||..+- .+.-..+...+..+...-.|+.|+|..... .......+.+|+.. ++.++|...+......
T Consensus 87 ~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccce
Confidence 99999999998321 122233444455555566788999865332 34556778888775 7888987766422221
Q ss_pred CCchHHHHHHHHHHhhcCCCcHHHHHHHhhhccCCCHHHHHHHHhhhcCCccc-------cccCccchhhcccCCChHHH
Q 003037 280 SECEQLIEIGRKIVGKCKGLPLAAKTIGSLLRFKRSSREWQSILDSEIGQLEE-------FERGLLPPLLLSYNDMPSVI 352 (854)
Q Consensus 280 ~~~~~~~~~~~~I~~~~~GlPLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~-------~~~~v~~~l~~sy~~L~~~~ 352 (854)
.-...-.....+|.++.+|.|++|..+++..+.-. ..+-...++.....+.+ ......+.+.+||.-|..-.
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~-~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLS-PDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcC-HHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH
Confidence 11223345677899999999999999999887652 22222222221111111 12457889999999999999
Q ss_pred HHHHhhhhcCCCCceechHHHHHHHHHhCcccCCCCchHHHHHHHHHHHHHhccccccccccCCCCeEeEEEechhHHHH
Q 003037 353 KWSFSYCAIFPKDYNIEKDELIKLWLAQGYIRPKENKELEMIVEEYFDYLAARSFFQEFEREHTEGLVVRCKMHDIVHDF 432 (854)
Q Consensus 353 k~cf~~~s~fp~~~~i~~~~li~~Wia~g~i~~~~~~~~e~~~~~~l~~L~~~sli~~~~~~~~~~~~~~~~mHdlv~~~ 432 (854)
+--|..++.|...|... ...|.+-|-.... ..-....-+..+++++++....... .. +|+.-+-++.|
T Consensus 242 ~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~----~~y~~~~a~~ll~~kslv~a~~~~~--~a--~~Rl~eT~r~Y 309 (414)
T COG3903 242 RALFGRLAVFVGGFDLG----LALAVAAGADVDV----PRYLVLLALTLLVDKSLVVALDLLG--RA--RYRLLETGRRY 309 (414)
T ss_pred HHHhcchhhhhhhhccc----HHHHHhcCCcccc----chHHHHHHHHHHhhccchhhhhhhh--HH--HHHHHHHHHHH
Confidence 99999999998877655 3455554422100 1122333466788888876544321 11 35666666666
Q ss_pred HHHh
Q 003037 433 AQYL 436 (854)
Q Consensus 433 a~~~ 436 (854)
+..+
T Consensus 310 alae 313 (414)
T COG3903 310 ALAE 313 (414)
T ss_pred HHHH
Confidence 6544
No 60
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=2.1e-06 Score=96.36 Aligned_cols=185 Identities=16% Similarity=0.146 Sum_probs=115.4
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccc-------------------cccCe
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVI-------------------NHFEK 156 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~f~~ 156 (854)
-.++||.+..++.|...+.... -...+.++|+.|+||||+|+.+++...-. +.|..
T Consensus 15 f~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~d 89 (546)
T PRK14957 15 FAEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFID 89 (546)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCc
Confidence 4679999999999999886432 34567899999999999999998731100 01222
Q ss_pred eEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHH-HhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcE
Q 003037 157 RIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYA-SIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSK 235 (854)
Q Consensus 157 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 235 (854)
.+++.......+. +...+.+.+.. -..+++-++|+|++.......+..++..+......++
T Consensus 90 lieidaas~~gvd------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~ 151 (546)
T PRK14957 90 LIEIDAASRTGVE------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVK 151 (546)
T ss_pred eEEeecccccCHH------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCce
Confidence 2233221111111 12222222221 1245677999999977666778888888887766676
Q ss_pred EEEec-ccHHHHhh-ccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcH-HHHHHH
Q 003037 236 ILVTT-RKMTVAQM-MQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPL-AAKTIG 307 (854)
Q Consensus 236 ilvTt-R~~~v~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPL-ai~~~~ 307 (854)
+|++| ....+... ......+++++++.++....+.+.+...+. .........|++.++|.+- |+..+-
T Consensus 152 fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi----~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 152 FILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI----NSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred EEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 66544 43333322 334678999999999998888775432221 1223455678889999664 444443
No 61
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=1.3e-06 Score=97.52 Aligned_cols=181 Identities=12% Similarity=0.149 Sum_probs=115.7
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccc------------------------
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVI------------------------ 151 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~------------------------ 151 (854)
-.++||.+..++.|...+.... -...+.++|..|+||||+|+.+.+..--.
T Consensus 15 FddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~a 89 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDA 89 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHc
Confidence 4679999999999999997433 35667899999999999998887731110
Q ss_pred cccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHH----hcCCeEEEEEecCCCcChhhHHHHHHhh
Q 003037 152 NHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYAS----IARKKFLLVLDDVWTEDYNKWETFQRCL 227 (854)
Q Consensus 152 ~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l 227 (854)
+.|..+++++... ...++++.+.+... ..++.-++|||+++..+...+..|+..+
T Consensus 90 G~hpDviEIdAas---------------------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTL 148 (700)
T PRK12323 90 GRFVDYIEMDAAS---------------------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTL 148 (700)
T ss_pred CCCCcceEecccc---------------------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhh
Confidence 0011111221111 11223322222211 2456779999999877777888888888
Q ss_pred cCCCCCcEEEEeccc-HHHHh-hccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHH
Q 003037 228 KNGLRGSKILVTTRK-MTVAQ-MMQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKT 305 (854)
Q Consensus 228 ~~~~~gs~ilvTtR~-~~v~~-~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ 305 (854)
.....++++|++|.+ ..+.. ..+....+.++.++.++..+.+.+.+...+.. ...+..+.|++.++|.|.....
T Consensus 149 EEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~----~d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 149 EEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA----HEVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred ccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHH
Confidence 776666676655544 44432 23346789999999999999988765322211 1134456789999999975544
Q ss_pred H
Q 003037 306 I 306 (854)
Q Consensus 306 ~ 306 (854)
+
T Consensus 225 L 225 (700)
T PRK12323 225 L 225 (700)
T ss_pred H
Confidence 4
No 62
>PF13173 AAA_14: AAA domain
Probab=98.58 E-value=3.2e-07 Score=83.60 Aligned_cols=120 Identities=23% Similarity=0.238 Sum_probs=79.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCC
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIARK 203 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 203 (854)
.+++.|.|+-|+|||||+++++.+.. ....+++++..+........ .+ ..+.+.+....+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~----------------~~-~~~~~~~~~~~~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLAD----------------PD-LLEYFLELIKPG 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhh----------------hh-hHHHHHHhhccC
Confidence 46899999999999999999987422 33466777766543211000 00 223333333447
Q ss_pred eEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccHHHHhhc------cCcceEecCCCCHHHH
Q 003037 204 KFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKMTVAQMM------QSNDVILIRELSEQAC 265 (854)
Q Consensus 204 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~------~~~~~~~l~~L~~~e~ 265 (854)
+.+++||++.. ...|......+.......+|++|+........- +....++|.||+..|.
T Consensus 62 ~~~i~iDEiq~--~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQY--LPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhh--hccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 88999999954 457777766666655678999999877655331 1234789999998774
No 63
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=1.2e-06 Score=95.47 Aligned_cols=196 Identities=14% Similarity=0.125 Sum_probs=115.7
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccc-cCeeEEEEeCCccCHHHHHHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINH-FEKRIWVCVSDPFDEFRIAKA 174 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~s~~~~~~~~~~~ 174 (854)
-.++||.+..+..|..++.... -...+.++|+.|+||||+|+.+++. +... ... ...+....+-..+...
T Consensus 17 f~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~--Lnce~~~~--~~pCg~C~sC~~i~~g 87 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKR--LNCENPIG--NEPCNECTSCLEITKG 87 (484)
T ss_pred HHHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHh--cCcccccC--ccccCCCcHHHHHHcc
Confidence 4679999999999999887432 2356889999999999999999884 2111 000 0001111111111111
Q ss_pred HHHHh---cC-CCCCCccHHHHHHHHHHH-hcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEeccc-HHHHh-
Q 003037 175 IIEAL---EG-STPSLGELNSLLERIYAS-IARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRK-MTVAQ- 247 (854)
Q Consensus 175 i~~~l---~~-~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~- 247 (854)
....+ .. ......++.++.+.+... ..++.-++|+|+++.-....+..++..+........+|.+|.. ..+..
T Consensus 88 ~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~T 167 (484)
T PRK14956 88 ISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPET 167 (484)
T ss_pred CCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHH
Confidence 10000 00 001112222333333221 2456779999999877777888888888765556665555543 34432
Q ss_pred hccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHH
Q 003037 248 MMQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAK 304 (854)
Q Consensus 248 ~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~ 304 (854)
.......+.+++++.++..+.+.+.+...+. ....+....|++.++|.+.-+.
T Consensus 168 I~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi----~~e~eAL~~Ia~~S~Gd~RdAL 220 (484)
T PRK14956 168 ILSRCQDFIFKKVPLSVLQDYSEKLCKIENV----QYDQEGLFWIAKKGDGSVRDML 220 (484)
T ss_pred HHhhhheeeecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCChHHHHH
Confidence 2334568999999999999988876543221 1124456779999999885443
No 64
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=2.4e-08 Score=103.47 Aligned_cols=213 Identities=19% Similarity=0.155 Sum_probs=121.5
Q ss_pred cCCCcccEEEecCCCCcccccccccccc--ccccccCCCceeeecCCCCcc---cchhhhcCCCCcEEeecCcccccccc
Q 003037 505 DQLTCLRTLKITGISGEKRYFRIIVEIP--KEIKKLIHLRFLKLVWLDIEE---LPETCCELFNVQTLEVLDCRSFRRLP 579 (854)
Q Consensus 505 ~~l~~Lr~L~L~~~~~~~~~~~~i~~lP--~~i~~L~~L~~L~L~~~~i~~---lP~~i~~L~~L~~L~l~~~~~l~~lp 579 (854)
++++.||...|.++. +...+ .....|++++.|||+.|-+.. +-+-...|++|+.|+++.|. +.. |
T Consensus 118 sn~kkL~~IsLdn~~--------V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~-~ 187 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR--------VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSN-F 187 (505)
T ss_pred hhHHhhhheeecCcc--------ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccC-C
Confidence 567777777777776 55555 356677777777777776442 22334567777777777776 211 1
Q ss_pred cccccCCCCcccCceeecCCCCCCcccccccccCCceeEEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcc
Q 003037 580 QGFGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVN 659 (854)
Q Consensus 580 ~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 659 (854)
. ++.. . ..+++|+.|.++.|+. .
T Consensus 188 ~--~s~~------------------------------------------~-------~~l~~lK~L~l~~CGl------s 210 (505)
T KOG3207|consen 188 I--SSNT------------------------------------------T-------LLLSHLKQLVLNSCGL------S 210 (505)
T ss_pred c--cccc------------------------------------------h-------hhhhhhheEEeccCCC------C
Confidence 0 0000 0 0234555566665521 2
Q ss_pred hHHHhhhCCCCCCCCeEEEeccCCCCCCCCchhhcccCccEEEEecccCCCC--CCCCCCCCCCCEEEEcCCCCceEeCc
Q 003037 660 DKAIIEALQPPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCDT--MPPLGKLPSLEILEIRGNWNVKRVGD 737 (854)
Q Consensus 660 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~--l~~l~~L~~L~~L~L~~~~~l~~i~~ 737 (854)
-.++...+..+|+|+.|.+ ..+......-....-+..|+.|+|++|.+... .+..+.||.|..|.++.|. +.++..
T Consensus 211 ~k~V~~~~~~fPsl~~L~L-~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~ 288 (505)
T KOG3207|consen 211 WKDVQWILLTFPSLEVLYL-EANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAE 288 (505)
T ss_pred HHHHHHHHHhCCcHHHhhh-hcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcC
Confidence 2334444555677888888 43321110111123467788899988877653 3558888999998888775 443321
Q ss_pred cccCCCCCCCCccccCCccccCCCccceeeccccccccccccCCCccccCCCccceeeecccc
Q 003037 738 EFLGVGGGDHLHGISTSSSVIAFPKLKQVLFYNICHWEEWDFGKGDSITIMPQLKKLEFERCT 800 (854)
Q Consensus 738 ~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~ 800 (854)
--.+.. .....||+|+.|.+.. ++...|.... .+..+++|+.|.+..++
T Consensus 289 ~d~~s~-----------~kt~~f~kL~~L~i~~-N~I~~w~sl~--~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 289 PDVESL-----------DKTHTFPKLEYLNISE-NNIRDWRSLN--HLRTLENLKHLRITLNY 337 (505)
T ss_pred CCccch-----------hhhcccccceeeeccc-Cccccccccc--hhhccchhhhhhccccc
Confidence 101000 1123689999998887 3445555432 34467778887766553
No 65
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.55 E-value=3.4e-06 Score=94.03 Aligned_cols=193 Identities=17% Similarity=0.184 Sum_probs=114.4
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCe-eEEEEeCCccCHHHHHHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEK-RIWVCVSDPFDEFRIAKA 174 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~ 174 (854)
-.++||.+..+..|...+.... -...+.++|+.|+||||+|+.+++..--...... ..+..+.... ....
T Consensus 20 f~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~----~C~~ 90 (507)
T PRK06645 20 FAELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCT----NCIS 90 (507)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCCh----HHHH
Confidence 4578999999999988776432 3467889999999999999999874211100000 0000000000 0000
Q ss_pred HHH-------HhcCCCCCCccHHHHHHHHHH----HhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEE-eccc
Q 003037 175 IIE-------ALEGSTPSLGELNSLLERIYA----SIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILV-TTRK 242 (854)
Q Consensus 175 i~~-------~l~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~ 242 (854)
+.. .+.. ......+++...+.. -..+++-++|+|+++.-....+..+...+......+.+|+ ||+.
T Consensus 91 i~~~~h~Dv~eida--as~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~ 168 (507)
T PRK06645 91 FNNHNHPDIIEIDA--ASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEV 168 (507)
T ss_pred HhcCCCCcEEEeec--cCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCCh
Confidence 000 0000 011122222222211 1245677999999987666788889888887666667665 4444
Q ss_pred HHHHhhc-cCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHH
Q 003037 243 MTVAQMM-QSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAA 303 (854)
Q Consensus 243 ~~v~~~~-~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai 303 (854)
..+...+ .....+++.+++.++....+...+...+... ..+....|++.++|.+--+
T Consensus 169 ~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i----e~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 169 QKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKT----DIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 4444332 3356899999999999999988775332211 2344566888999987544
No 66
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.54 E-value=4e-06 Score=90.17 Aligned_cols=196 Identities=11% Similarity=0.051 Sum_probs=117.0
Q ss_pred cCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeE------EEEeCCccCH
Q 003037 95 DVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRI------WVCVSDPFDE 168 (854)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~------wv~~s~~~~~ 168 (854)
...++||.++..+.|.+.+.... -...+.++|+.|+||+|+|..+++..--........ =..+....
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c-- 89 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH-- 89 (365)
T ss_pred chhhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCC--
Confidence 44679999999999999987533 355688999999999999987776311000000000 00000000
Q ss_pred HHHHHHHHHHh-------cC---CC----CCCccHHHHHHHHHHHh-----cCCeEEEEEecCCCcChhhHHHHHHhhcC
Q 003037 169 FRIAKAIIEAL-------EG---ST----PSLGELNSLLERIYASI-----ARKKFLLVLDDVWTEDYNKWETFQRCLKN 229 (854)
Q Consensus 169 ~~~~~~i~~~l-------~~---~~----~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~ 229 (854)
...+.+...- .. .. .....++++ +.+.+.+ .+.+.++|+||+...+......+...+..
T Consensus 90 -~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdqi-R~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEe 167 (365)
T PRK07471 90 -PVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEV-RELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEE 167 (365)
T ss_pred -hHHHHHHccCCCCeEEEecccccccccccccccHHHH-HHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhc
Confidence 0111111000 00 00 011223442 2333333 25677999999987777788888888877
Q ss_pred CCCCcEEEEecccHH-HH-hhccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHHH
Q 003037 230 GLRGSKILVTTRKMT-VA-QMMQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTIG 307 (854)
Q Consensus 230 ~~~gs~ilvTtR~~~-v~-~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~ 307 (854)
...++.+|++|.+.. +. ........+.+.+++.++..+++...... .. .+....+++.++|.|+.+..+.
T Consensus 168 pp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~-----~~---~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 168 PPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD-----LP---DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc-----CC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 666777777776553 32 22334678999999999999999875311 11 1112568899999998665553
No 67
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.53 E-value=6.4e-06 Score=90.12 Aligned_cols=186 Identities=12% Similarity=0.109 Sum_probs=113.8
Q ss_pred cCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccc--------------------ccc
Q 003037 95 DVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVI--------------------NHF 154 (854)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~f 154 (854)
.-.+++|.++.++.+..++.... -...+.++|++|+||||+|+.+.....-. .++
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~ 86 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSL 86 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 34678999999999999886432 34678899999999999998887641100 012
Q ss_pred CeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCc
Q 003037 155 EKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGS 234 (854)
Q Consensus 155 ~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 234 (854)
+ .+++..+..... ...+++...+... -..+++-++|+|++..-.......+...+......+
T Consensus 87 ~-~~~~~~~~~~~~-~~~~~l~~~~~~~----------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~ 148 (355)
T TIGR02397 87 D-VIEIDAASNNGV-DDIREILDNVKYA----------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHV 148 (355)
T ss_pred C-EEEeeccccCCH-HHHHHHHHHHhcC----------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccce
Confidence 1 122222211111 1122222222110 022455689999985544456777888776655667
Q ss_pred EEEEecccHH-HHhh-ccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHHH
Q 003037 235 KILVTTRKMT-VAQM-MQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTIG 307 (854)
Q Consensus 235 ~ilvTtR~~~-v~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~ 307 (854)
.+|++|.+.. +... ......+++.+++.++..+.+...+...+... -.+.+..|++.++|.|..+....
T Consensus 149 ~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i----~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 149 VFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI----EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred eEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCChHHHHHHH
Confidence 7777765443 2222 23346788999999999999887664322111 13567778899999987665443
No 68
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.53 E-value=3.5e-06 Score=94.53 Aligned_cols=197 Identities=14% Similarity=0.192 Sum_probs=113.2
Q ss_pred cCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHH
Q 003037 95 DVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKA 174 (854)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 174 (854)
.-.+++|++..++.+..++.... -.+.+.++|+.|+||||+|+.+++...-.. |.... ....-...+.
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~~-~Cg~C~sCr~ 81 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDGD-CCNSCSVCES 81 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCCC-CCcccHHHHH
Confidence 35689999999999999886432 346788999999999999999887421001 11100 0000111111
Q ss_pred HHHHh-------cCC-CCCCccHHHHHHHHHHH-hcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEec-ccHH
Q 003037 175 IIEAL-------EGS-TPSLGELNSLLERIYAS-IARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTT-RKMT 244 (854)
Q Consensus 175 i~~~l-------~~~-~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~ 244 (854)
+.... ... .....+++.+...+... ..+++-++|+|++..-....+..+...+......+.+|++| ....
T Consensus 82 i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~K 161 (605)
T PRK05896 82 INTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQK 161 (605)
T ss_pred HHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHh
Confidence 11100 000 00111122222222111 12344479999997666677888888887666566666555 3333
Q ss_pred HHh-hccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcH-HHHHHH
Q 003037 245 VAQ-MMQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPL-AAKTIG 307 (854)
Q Consensus 245 v~~-~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPL-ai~~~~ 307 (854)
+.. .......+++.+++.++....+...+...+.... .+.+..|++.++|.+- |+..+-
T Consensus 162 Ll~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is----~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 162 IPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE----DNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred hhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHHH
Confidence 332 2344568999999999999888876542221111 3456778889999664 444443
No 69
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.53 E-value=2.2e-06 Score=98.87 Aligned_cols=204 Identities=17% Similarity=0.152 Sum_probs=121.6
Q ss_pred cCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhcccccccc---CeeEEEEeCCc---cCH
Q 003037 95 DVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHF---EKRIWVCVSDP---FDE 168 (854)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~s~~---~~~ 168 (854)
.-+.++|++..+..+...+.. .....+.|+|++|+||||+|+.+++.......+ ...-|+.+... .+.
T Consensus 152 ~~~~iiGqs~~~~~l~~~ia~------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~ 225 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKVAS------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDP 225 (615)
T ss_pred cHHhceeCcHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCH
Confidence 345799999999998887742 235569999999999999999998753322222 12345554321 122
Q ss_pred HHHHHHH---------------HHHhcCC------------------CCCCccHHHHHHHHHHHhcCCeEEEEEecCCCc
Q 003037 169 FRIAKAI---------------IEALEGS------------------TPSLGELNSLLERIYASIARKKFLLVLDDVWTE 215 (854)
Q Consensus 169 ~~~~~~i---------------~~~l~~~------------------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~ 215 (854)
..+...+ +...+.. .....+ ...+..+.+.++++++.++-|+.|.+
T Consensus 226 ~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-~~~Q~~Ll~~Le~~~v~~~~~~~~~~ 304 (615)
T TIGR02903 226 REVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-PLLQNKLLKVLEDKRVEFSSSYYDPD 304 (615)
T ss_pred HHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-HHHHHHHHHHHhhCeEEeecceeccC
Confidence 2221111 1111110 001111 23567788888888988888888777
Q ss_pred ChhhHHHHHHhhcCCCCCcEEEE--ecccHHH-Hhhc-cCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 003037 216 DYNKWETFQRCLKNGLRGSKILV--TTRKMTV-AQMM-QSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRK 291 (854)
Q Consensus 216 ~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~v-~~~~-~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~ 291 (854)
+...|+.+...+....+...+++ ||++... ...+ .....+.+.+++.+|.+.++.+.+..... .. -.++.+.
T Consensus 305 ~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v-~l---s~eal~~ 380 (615)
T TIGR02903 305 DPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV-HL---AAGVEEL 380 (615)
T ss_pred CcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHH
Confidence 66778888776666655555555 5664432 1111 22347789999999999999987642211 11 1334455
Q ss_pred HHhhcCCCcHHHHHHHhh
Q 003037 292 IVGKCKGLPLAAKTIGSL 309 (854)
Q Consensus 292 I~~~~~GlPLai~~~~~~ 309 (854)
|.+++..-+-|+..++..
T Consensus 381 L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 381 IARYTIEGRKAVNILADV 398 (615)
T ss_pred HHHCCCcHHHHHHHHHHH
Confidence 666655445666655444
No 70
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=4.6e-06 Score=89.21 Aligned_cols=200 Identities=14% Similarity=0.109 Sum_probs=119.7
Q ss_pred cccCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhcccccc--ccCeeEEEEeCCccCHHH
Q 003037 93 LIDVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVIN--HFEKRIWVCVSDPFDEFR 170 (854)
Q Consensus 93 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~f~~~~wv~~s~~~~~~~ 170 (854)
|.....++|.++..+.+...+.... -...+.|+|+.|+||||+|..+++..--.. .+.... .........
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~ 90 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASP 90 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCH
Confidence 3445679999999999999997433 355788999999999999998887411100 011110 000110111
Q ss_pred HHHHHHHH-------hcCC--C-----CCCccHHHHHHHHHHHh-----cCCeEEEEEecCCCcChhhHHHHHHhhcCCC
Q 003037 171 IAKAIIEA-------LEGS--T-----PSLGELNSLLERIYASI-----ARKKFLLVLDDVWTEDYNKWETFQRCLKNGL 231 (854)
Q Consensus 171 ~~~~i~~~-------l~~~--~-----~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~ 231 (854)
..+.+... +... . .....++++. .+.+.+ .+++-++|+|++..-+......+...+....
T Consensus 91 ~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp 169 (351)
T PRK09112 91 VWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPP 169 (351)
T ss_pred HHHHHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCC
Confidence 22222211 1000 0 0112234432 333333 3567799999998777777788888887655
Q ss_pred CCcEEEEecccH-HHHh-hccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHHH
Q 003037 232 RGSKILVTTRKM-TVAQ-MMQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTIG 307 (854)
Q Consensus 232 ~gs~ilvTtR~~-~v~~-~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~ 307 (854)
....+|++|... .+.. ..+....+.+.+++.++..+++...... . . ...+.+..|++.++|.|.....+.
T Consensus 170 ~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~--~-~---~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 170 ARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS--Q-G---SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc--c-C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 556555555433 3322 2233569999999999999999874321 1 1 113446678999999998665543
No 71
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.52 E-value=7.2e-08 Score=107.15 Aligned_cols=182 Identities=29% Similarity=0.335 Sum_probs=107.7
Q ss_pred hcCCCcccEEEecCCCCccccccccccccccccccC-CCceeeecCCCCcccchhhhcCCCCcEEeecCccccccccccc
Q 003037 504 FDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLI-HLRFLKLVWLDIEELPETCCELFNVQTLEVLDCRSFRRLPQGF 582 (854)
Q Consensus 504 ~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~-~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i 582 (854)
+..++.+..|++.++. +.++|..++.+. +|+.|++++|.+..+|..++.+++|+.|+++.|. +..+|...
T Consensus 112 ~~~~~~l~~L~l~~n~--------i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~ 182 (394)
T COG4886 112 LLELTNLTSLDLDNNN--------ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLL 182 (394)
T ss_pred hhcccceeEEecCCcc--------cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhh
Confidence 4455667777777776 677777666664 7777777777777776667777777777777776 66777655
Q ss_pred ccCCCCcccCceeecCCCCCCcccccccccCCceeEEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHH
Q 003037 583 GKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKA 662 (854)
Q Consensus 583 ~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 662 (854)
+.+++|+.|.. +.. .+..++. ....+..|+.|.++.+ ....
T Consensus 183 ~~~~~L~~L~l---s~N---~i~~l~~-------------------------~~~~~~~L~~l~~~~N--------~~~~ 223 (394)
T COG4886 183 SNLSNLNNLDL---SGN---KISDLPP-------------------------EIELLSALEELDLSNN--------SIIE 223 (394)
T ss_pred hhhhhhhheec---cCC---ccccCch-------------------------hhhhhhhhhhhhhcCC--------ccee
Confidence 55666665511 111 1111100 0012233555555544 1122
Q ss_pred HhhhCCCCCCCCeEEEeccCCCCCCCCchhhcccCccEEEEecccCCCCCCCCCCCCCCCEEEEcCCCCceEeC
Q 003037 663 IIEALQPPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCDTMPPLGKLPSLEILEIRGNWNVKRVG 736 (854)
Q Consensus 663 ~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~i~ 736 (854)
.+..+....++..|.+ .++.... +|.+++.+++|+.|++++|.+.. ++.++.+.+|+.|+++++......+
T Consensus 224 ~~~~~~~~~~l~~l~l-~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~-i~~~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 224 LLSSLSNLKNLSGLEL-SNNKLED-LPESIGNLSNLETLDLSNNQISS-ISSLGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cchhhhhccccccccc-CCceeee-ccchhccccccceeccccccccc-cccccccCccCEEeccCccccccch
Confidence 3333444455555555 4444333 46777778888888888886544 3448888888888888877443333
No 72
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.52 E-value=9.7e-09 Score=105.71 Aligned_cols=307 Identities=17% Similarity=0.193 Sum_probs=158.9
Q ss_pred CceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccc--ccccccccCCCceeeecCCC-Ccc--cch
Q 003037 482 KLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVE--IPKEIKKLIHLRFLKLVWLD-IEE--LPE 556 (854)
Q Consensus 482 ~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~--lP~~i~~L~~L~~L~L~~~~-i~~--lP~ 556 (854)
.||.|.+.++....... +-..-.+++++..|.+.+|.. +++ +-+.-..+..|++|+|..|. |+. |-.
T Consensus 139 ~lk~LSlrG~r~v~~ss-lrt~~~~CpnIehL~l~gc~~-------iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~ 210 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSS-LRTFASNCPNIEHLALYGCKK-------ITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKY 210 (483)
T ss_pred ccccccccccccCCcch-hhHHhhhCCchhhhhhhccee-------ccHHHHHHHHHhcchhhhhhhcccchhHHHHHHH
Confidence 46666666665432222 334456788888888888763 332 11222466788888888754 542 222
Q ss_pred hhhcCCCCcEEeecCccccccccccc----ccCCCCcccCceeecCCCCCCcccccccccCCceeEEecccCCCChhHHH
Q 003037 557 TCCELFNVQTLEVLDCRSFRRLPQGF----GKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLGNVRDADEAK 632 (854)
Q Consensus 557 ~i~~L~~L~~L~l~~~~~l~~lp~~i----~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~ 632 (854)
-...+++|.+|++++|..+.. .++ ...++|+.+ ... ++.... .+++
T Consensus 211 la~gC~kL~~lNlSwc~qi~~--~gv~~~~rG~~~l~~~---~~k-----------------------GC~e~~--le~l 260 (483)
T KOG4341|consen 211 LAEGCRKLKYLNLSWCPQISG--NGVQALQRGCKELEKL---SLK-----------------------GCLELE--LEAL 260 (483)
T ss_pred HHHhhhhHHHhhhccCchhhc--CcchHHhccchhhhhh---hhc-----------------------cccccc--HHHH
Confidence 234577888888888875443 111 111122222 000 110000 0111
Q ss_pred HhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCch-hh-cccCccEEEEecccCCC
Q 003037 633 SAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSW-IV-SLNKLKKLVLYQFYLCD 710 (854)
Q Consensus 633 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~-~~-~l~~L~~L~L~~~~~~~ 710 (854)
...-..+..+.++++..+. ......+...-..+..|+.|.. +++......+-| ++ ..++|+.|.++.|+...
T Consensus 261 ~~~~~~~~~i~~lnl~~c~-----~lTD~~~~~i~~~c~~lq~l~~-s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fs 334 (483)
T KOG4341|consen 261 LKAAAYCLEILKLNLQHCN-----QLTDEDLWLIACGCHALQVLCY-SSCTDITDEVLWALGQHCHNLQVLELSGCQQFS 334 (483)
T ss_pred HHHhccChHhhccchhhhc-----cccchHHHHHhhhhhHhhhhcc-cCCCCCchHHHHHHhcCCCceEEEeccccchhh
Confidence 1111122223333333320 0111222222233456677766 555443323333 22 56777777777776543
Q ss_pred CCC--C-CCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCCCccceeeccccccccccccCC-Ccccc
Q 003037 711 TMP--P-LGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLKQVLFYNICHWEEWDFGK-GDSIT 786 (854)
Q Consensus 711 ~l~--~-l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~ 786 (854)
..- . -.+.+.|+.+++.+|..+.. . .+... ...+|.|+.|.+++|.....-.... .....
T Consensus 335 d~~ft~l~rn~~~Le~l~~e~~~~~~d-~-tL~sl--------------s~~C~~lr~lslshce~itD~gi~~l~~~~c 398 (483)
T KOG4341|consen 335 DRGFTMLGRNCPHLERLDLEECGLITD-G-TLASL--------------SRNCPRLRVLSLSHCELITDEGIRHLSSSSC 398 (483)
T ss_pred hhhhhhhhcCChhhhhhcccccceehh-h-hHhhh--------------ccCCchhccCChhhhhhhhhhhhhhhhhccc
Confidence 222 2 23467777777776652211 1 11111 2367888888888775554331000 00112
Q ss_pred CCCccceeeecccccCcC-CCcCCCCCCCcCEEEEecCcchHHhhccCCCCCCCCcCCCCceEeCCCCC
Q 003037 787 IMPQLKKLEFERCTELKS-VPEKLLRSTTLEELSIVECPILVERYKKYTGQDWSLVSHIPSIKIGGYYG 854 (854)
Q Consensus 787 ~l~~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~hip~i~~~~~~~ 854 (854)
.+..|+.|++.+||.+.. .-+.+..+++|+.+++.+|..+.+.- .+ ...+|.|++.++.|+|
T Consensus 399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~----i~--~~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 399 SLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEA----IS--RFATHLPNIKVHAYFA 461 (483)
T ss_pred cccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhh----hH--HHHhhCccceehhhcc
Confidence 577899999999987664 33456677899999999998764321 11 2358999999998875
No 73
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.51 E-value=2.2e-06 Score=97.06 Aligned_cols=181 Identities=14% Similarity=0.150 Sum_probs=113.0
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccc-------------------cCe
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINH-------------------FEK 156 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~ 156 (854)
-.++||.+..++.|..++...+ -...+.++|+.|+||||+|+.+++..--... |..
T Consensus 15 FddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~D 89 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVD 89 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccc
Confidence 4679999999999999987432 3567889999999999999988773110100 111
Q ss_pred eEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHH----HhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCC
Q 003037 157 RIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYA----SIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLR 232 (854)
Q Consensus 157 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 232 (854)
++.+.... ...++.+.+.+.. -..+++-++|||++..........++..+.....
T Consensus 90 vlEidaAs---------------------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~ 148 (709)
T PRK08691 90 LLEIDAAS---------------------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPE 148 (709)
T ss_pred eEEEeccc---------------------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCC
Confidence 11121111 1122222222211 1235667999999976555567778888776556
Q ss_pred CcEEEEecccH-HHHh-hccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHH
Q 003037 233 GSKILVTTRKM-TVAQ-MMQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTI 306 (854)
Q Consensus 233 gs~ilvTtR~~-~v~~-~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~ 306 (854)
.+++|++|.+. .+.. ..+....+.+++++.++....+.+.+-..+. ....+....|++.++|.+.-+..+
T Consensus 149 ~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi----~id~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 149 HVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI----AYEPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred CcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHHhCCCHHHHHHH
Confidence 67777776543 2221 1233457889999999999999876643222 122345677899999988554433
No 74
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.51 E-value=2.7e-06 Score=96.92 Aligned_cols=195 Identities=14% Similarity=0.181 Sum_probs=116.2
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAI 175 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 175 (854)
-.++||.+..++.|...+.... -...+.++|..|+||||+|+.+++..--...+. ...+..-...+.|
T Consensus 15 f~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i 82 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREI 82 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHH
Confidence 4679999999999999887432 245578999999999999999987411100000 0000000111111
Q ss_pred HHH-------hcCC-CCCCccHHHHHHHHHH-HhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccH-HH
Q 003037 176 IEA-------LEGS-TPSLGELNSLLERIYA-SIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKM-TV 245 (854)
Q Consensus 176 ~~~-------l~~~-~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v 245 (854)
... +... .....++.++.+.+.. -..+++-++|||+++.-.......++..+.......++|++|.+. .+
T Consensus 83 ~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kL 162 (647)
T PRK07994 83 EQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (647)
T ss_pred HcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCcccc
Confidence 100 0000 0111122222222221 134677799999998777778888888888766677766655543 33
Q ss_pred H-hhccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHH
Q 003037 246 A-QMMQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTI 306 (854)
Q Consensus 246 ~-~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~ 306 (854)
. ...+....+.+++++.++....+.+.+...+. ....+....|++.++|.+-.+..+
T Consensus 163 l~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i----~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 163 PVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI----PFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred chHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3 22333678999999999999999876532211 112344567889999988655444
No 75
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=4.8e-06 Score=92.03 Aligned_cols=182 Identities=16% Similarity=0.138 Sum_probs=115.6
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhcc------c------------c-ccccCe
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNN------D------------V-INHFEK 156 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~------~------------~-~~~f~~ 156 (854)
-.++||.+..++.|...+.... -...+.++|+.|+||||+|+.+++.. . + .+.+..
T Consensus 12 f~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~D 86 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPD 86 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCC
Confidence 4679999999999988886432 34578899999999999998887620 0 0 011223
Q ss_pred eEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEE
Q 003037 157 RIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKI 236 (854)
Q Consensus 157 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 236 (854)
++.++.+....+.. .+.+++..... -..++.-++|+|+++.-.......+...+......+++
T Consensus 87 v~eidaas~~~vdd-IR~Iie~~~~~----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~f 149 (491)
T PRK14964 87 VIEIDAASNTSVDD-IKVILENSCYL----------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKF 149 (491)
T ss_pred EEEEecccCCCHHH-HHHHHHHHHhc----------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEE
Confidence 33444333222222 12222221100 11356678999999766666788888888877777777
Q ss_pred EEeccc-HHHHhh-ccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHH
Q 003037 237 LVTTRK-MTVAQM-MQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAA 303 (854)
Q Consensus 237 lvTtR~-~~v~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai 303 (854)
|++|.. ..+... ......+++++++.++..+.+...+...+.. ...+....|++.++|.+..+
T Consensus 150 Ilatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~----i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 150 ILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE----HDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred EEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHH
Confidence 766643 333332 3446789999999999999998876432221 22345567888999987544
No 76
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.50 E-value=5.2e-06 Score=90.05 Aligned_cols=181 Identities=10% Similarity=0.058 Sum_probs=111.3
Q ss_pred CccccchhHHHHHHHHhcccccc----cCCCeEEEEEEecCCCcHHHHHHHHHhccccc------------------ccc
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSE----QQNAVQVISLVGMGGIGKTTLAQFAYNNNDVI------------------NHF 154 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~------------------~~f 154 (854)
++++|.+..++.|...+...... ...-...+.++|+.|+|||++|..+++..--. +.+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 56899999999999999754310 00134668899999999999998887631000 001
Q ss_pred CeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHH---HHHHHH-HhcCCeEEEEEecCCCcChhhHHHHHHhhcCC
Q 003037 155 EKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSL---LERIYA-SIARKKFLLVLDDVWTEDYNKWETFQRCLKNG 230 (854)
Q Consensus 155 ~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~---~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~ 230 (854)
..+.++.... ....++++ .+.+.. -..+++-++|+|++..-.......+...+...
T Consensus 85 pD~~~i~~~~--------------------~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep 144 (394)
T PRK07940 85 PDVRVVAPEG--------------------LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEP 144 (394)
T ss_pred CCEEEecccc--------------------ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcC
Confidence 1111221110 01112222 221111 11345568889999776666667788878776
Q ss_pred CCCcEEEEecccH-HHHhh-ccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHH
Q 003037 231 LRGSKILVTTRKM-TVAQM-MQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTI 306 (854)
Q Consensus 231 ~~gs~ilvTtR~~-~v~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~ 306 (854)
..+..+|++|.+. .+... .+....+.+.+++.++..+.+..... .. .+.+..+++.++|.|.....+
T Consensus 145 ~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~-----~~----~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 145 PPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG-----VD----PETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC-----CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 6677777766654 33322 33457999999999999998875321 11 344677899999999765444
No 77
>PRK09087 hypothetical protein; Validated
Probab=98.49 E-value=7.9e-06 Score=82.04 Aligned_cols=140 Identities=19% Similarity=0.194 Sum_probs=85.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCC
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIARK 203 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 203 (854)
.+.+.|+|..|+|||+|++.++... ...+++.. .+...++..+ .+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~-------~~~~i~~~------~~~~~~~~~~---------------------~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS-------DALLIHPN------EIGSDAANAA---------------------AE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc-------CCEEecHH------HcchHHHHhh---------------------hc-
Confidence 4568999999999999999988742 11233321 1111122111 11
Q ss_pred eEEEEEecCCCc--ChhhHHHHHHhhcCCCCCcEEEEeccc---------HHHHhhccCcceEecCCCCHHHHHHHHHHH
Q 003037 204 KFLLVLDDVWTE--DYNKWETFQRCLKNGLRGSKILVTTRK---------MTVAQMMQSNDVILIRELSEQACWSLFEQL 272 (854)
Q Consensus 204 ~~LlVlDdv~~~--~~~~~~~l~~~l~~~~~gs~ilvTtR~---------~~v~~~~~~~~~~~l~~L~~~e~~~l~~~~ 272 (854)
-+|++||+... +...+-.+...+.. .|..||+|++. +.....+.....+++++++.++-.+++.+.
T Consensus 89 -~~l~iDDi~~~~~~~~~lf~l~n~~~~--~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 89 -GPVLIEDIDAGGFDETGLFHLINSVRQ--AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred -CeEEEECCCCCCCCHHHHHHHHHHHHh--CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 27888999542 22223333333332 36679998873 234444556679999999999999999988
Q ss_pred hcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHH
Q 003037 273 AFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKT 305 (854)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ 305 (854)
+....-..+ +++..-|++++.|..-++..
T Consensus 166 ~~~~~~~l~----~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 166 FADRQLYVD----PHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHcCCCCC----HHHHHHHHHHhhhhHHHHHH
Confidence 754322122 45556677777777766654
No 78
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=3.9e-06 Score=94.31 Aligned_cols=184 Identities=13% Similarity=0.102 Sum_probs=113.8
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccc-------------------cccCe
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVI-------------------NHFEK 156 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~f~~ 156 (854)
-.++||-+..++.|..++.... -...+.++|+.|+||||+|+.+++..--. +.|..
T Consensus 15 f~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d 89 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPD 89 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCce
Confidence 4679999999999999997432 34567899999999999998888731100 11222
Q ss_pred eEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEE
Q 003037 157 RIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKI 236 (854)
Q Consensus 157 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 236 (854)
++.+..+....++.+ +++++.+.- .-..++.-++|+|+++.-.......++..+......+++
T Consensus 90 ~~eidaas~~~v~~i-R~l~~~~~~----------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~f 152 (509)
T PRK14958 90 LFEVDAASRTKVEDT-RELLDNIPY----------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKF 152 (509)
T ss_pred EEEEcccccCCHHHH-HHHHHHHhh----------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEE
Confidence 333332222222211 222222111 012356678999999776667788888888877677777
Q ss_pred EEecccH-HHHh-hccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHH
Q 003037 237 LVTTRKM-TVAQ-MMQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKT 305 (854)
Q Consensus 237 lvTtR~~-~v~~-~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ 305 (854)
|++|.+. .+.. ..+....+++++++.++....+...+...+.... .+....|++.++|.+.-+..
T Consensus 153 Ilattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~----~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 153 ILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE----NAALDLLARAANGSVRDALS 219 (509)
T ss_pred EEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHH
Confidence 7665443 3322 2233567899999999988877665532222111 33456688889998754433
No 79
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=5.6e-06 Score=92.07 Aligned_cols=188 Identities=19% Similarity=0.187 Sum_probs=110.2
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccc-------------------cCe
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINH-------------------FEK 156 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~ 156 (854)
-+++||.+.....|...+.... -...+.++|++|+||||+|+.+++...-... +..
T Consensus 13 ~~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~d 87 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMD 87 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCc
Confidence 4679999998888888776332 2456889999999999999999874211000 001
Q ss_pred eEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHH-HhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcE
Q 003037 157 RIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYA-SIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSK 235 (854)
Q Consensus 157 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 235 (854)
++.+..+...... ++..+.+.+.. ...+++-++|+|+++.-.....+.+...+........
T Consensus 88 v~el~aa~~~gid------------------~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv 149 (472)
T PRK14962 88 VIELDAASNRGID------------------EIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVV 149 (472)
T ss_pred cEEEeCcccCCHH------------------HHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEE
Confidence 2222221111111 11111111111 1235667999999965444556677777766544555
Q ss_pred EEEeccc-HHHHhh-ccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcC-CCcHHHHHHHhhh
Q 003037 236 ILVTTRK-MTVAQM-MQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCK-GLPLAAKTIGSLL 310 (854)
Q Consensus 236 ilvTtR~-~~v~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~-GlPLai~~~~~~l 310 (854)
+|++|.+ ..+... ......+++.+++.++....+.+.+...+.... .+....|+++++ +.+.|+..+-.+.
T Consensus 150 ~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~----~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 150 FVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID----REALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 5544443 333332 233568999999999999998887643222122 345566777775 4567766665543
No 80
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.47 E-value=6.5e-06 Score=80.82 Aligned_cols=91 Identities=13% Similarity=0.130 Sum_probs=65.8
Q ss_pred CCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccH-HHHhh-ccCcceEecCCCCHHHHHHHHHHHhcCCCCC
Q 003037 202 RKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKM-TVAQM-MQSNDVILIRELSEQACWSLFEQLAFFGRPR 279 (854)
Q Consensus 202 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~ 279 (854)
+.+-++|+||+..-....++.+...+......+.+|++|++. .+... ......+.+.+++.++..+.+.+..
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~g------ 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQG------ 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHcC------
Confidence 556789999997666667788888887766677777777654 22221 2235689999999999999998761
Q ss_pred CCchHHHHHHHHHHhhcCCCcHH
Q 003037 280 SECEQLIEIGRKIVGKCKGLPLA 302 (854)
Q Consensus 280 ~~~~~~~~~~~~I~~~~~GlPLa 302 (854)
.. .+.+..|++.++|.|..
T Consensus 169 i~----~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 169 IS----EEAAELLLALAGGSPGA 187 (188)
T ss_pred CC----HHHHHHHHHHcCCCccc
Confidence 11 35678899999998853
No 81
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.46 E-value=1.8e-07 Score=88.76 Aligned_cols=89 Identities=21% Similarity=0.245 Sum_probs=29.5
Q ss_pred cccccCCCceEEEEecCCCCcccCchhhhhc-CCCcccEEEecCCCCccccccccccccccccccCCCceeeecCCCCcc
Q 003037 475 DSIFSAKKLRSFLIHSTNKDLISPVLPVLFD-QLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIEE 553 (854)
Q Consensus 475 ~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~-~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~~ 553 (854)
+...++.++|.|.+.++....+.. ++ .+.+|++|+|++|. +..++ .+..|.+|+.|++++|.|+.
T Consensus 13 ~~~~n~~~~~~L~L~~n~I~~Ie~-----L~~~l~~L~~L~Ls~N~--------I~~l~-~l~~L~~L~~L~L~~N~I~~ 78 (175)
T PF14580_consen 13 AQYNNPVKLRELNLRGNQISTIEN-----LGATLDKLEVLDLSNNQ--------ITKLE-GLPGLPRLKTLDLSNNRISS 78 (175)
T ss_dssp -----------------------S-------TT-TT--EEE-TTS----------S--T-T----TT--EEE--SS---S
T ss_pred cccccccccccccccccccccccc-----hhhhhcCCCEEECCCCC--------Ccccc-CccChhhhhhcccCCCCCCc
Confidence 345566778999999988443332 44 57889999999998 88885 57889999999999999998
Q ss_pred cchhh-hcCCCCcEEeecCccccccc
Q 003037 554 LPETC-CELFNVQTLEVLDCRSFRRL 578 (854)
Q Consensus 554 lP~~i-~~L~~L~~L~l~~~~~l~~l 578 (854)
+++.+ ..+++|++|++++|. +..+
T Consensus 79 i~~~l~~~lp~L~~L~L~~N~-I~~l 103 (175)
T PF14580_consen 79 ISEGLDKNLPNLQELYLSNNK-ISDL 103 (175)
T ss_dssp -CHHHHHH-TT--EEE-TTS----SC
T ss_pred cccchHHhCCcCCEEECcCCc-CCCh
Confidence 87666 468999999999887 5444
No 82
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.46 E-value=8.8e-06 Score=82.78 Aligned_cols=207 Identities=17% Similarity=0.130 Sum_probs=127.1
Q ss_pred CCccccch---hHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccc----cccCeeEEEEeCCccCH
Q 003037 96 VSEVRGRD---EEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVI----NHFEKRIWVCVSDPFDE 168 (854)
Q Consensus 96 ~~~~vGr~---~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~s~~~~~ 168 (854)
.+.+||-. +.++++.++|..+. ..+.+.+.|||.+|+|||++++++.+.--.. ..--.++.|.....++.
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~P~---~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~ 109 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEYPK---RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDE 109 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhCCc---ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCCh
Confidence 34556653 45667777777665 3467789999999999999999998741111 11115667778888999
Q ss_pred HHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcC-CeEEEEEecCCCc------ChhhHHHHHHhhcCCCCCcEEEEecc
Q 003037 169 FRIAKAIIEALEGSTPSLGELNSLLERIYASIAR-KKFLLVLDDVWTE------DYNKWETFQRCLKNGLRGSKILVTTR 241 (854)
Q Consensus 169 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~------~~~~~~~l~~~l~~~~~gs~ilvTtR 241 (854)
..++..|+.+++...........+...+...++. +--+||+|++++- .+...-.....+.+.-.=+-|.|-|+
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 9999999999998876666666666665566653 3458999999651 12222233334444444455667666
Q ss_pred cHHHHhhc-----cCcceEecCCCCHHH-HHHHHHHHhcC-CCCCCCchHHHHHHHHHHhhcCCCcHHHHH
Q 003037 242 KMTVAQMM-----QSNDVILIRELSEQA-CWSLFEQLAFF-GRPRSECEQLIEIGRKIVGKCKGLPLAAKT 305 (854)
Q Consensus 242 ~~~v~~~~-----~~~~~~~l~~L~~~e-~~~l~~~~~~~-~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ 305 (854)
...-+-.. +-..++.++....++ ...|+...... .-.....-...++++.|.+.++|+.--+..
T Consensus 190 ~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ 260 (302)
T PF05621_consen 190 EAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSR 260 (302)
T ss_pred HHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHH
Confidence 54322111 113467777766544 44444322110 011122233467899999999998754433
No 83
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=5.9e-06 Score=93.99 Aligned_cols=198 Identities=13% Similarity=0.137 Sum_probs=113.9
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhcccccccc--CeeEEEEeCCccCHHHHHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHF--EKRIWVCVSDPFDEFRIAK 173 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~~~~~~~~~~ 173 (854)
-+++||.+..++.|..++.... -...+.++|..|+||||+|+.+++..--.+.. .+.-. ..+..-..-.
T Consensus 15 f~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~ 85 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACR 85 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHH
Confidence 4678999999999999887433 35677899999999999999886631100000 00000 0000000011
Q ss_pred HHHHH-----hcCCCCCCccHHHHHHHHHH----HhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEeccc-H
Q 003037 174 AIIEA-----LEGSTPSLGELNSLLERIYA----SIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRK-M 243 (854)
Q Consensus 174 ~i~~~-----l~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~ 243 (854)
.|... +..+......++++.+.+.. -..++.-++|||+++......+..++..+.......++|++|.+ .
T Consensus 86 ~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~ 165 (618)
T PRK14951 86 DIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQ 165 (618)
T ss_pred HHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCch
Confidence 11000 00000011122222222211 11245568999999887777888888888776666677665543 3
Q ss_pred HHH-hhccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHH
Q 003037 244 TVA-QMMQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTI 306 (854)
Q Consensus 244 ~v~-~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~ 306 (854)
.+. ........+++++++.++..+.+.+.+...+... ..+....|++.++|.+.-+..+
T Consensus 166 kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i----e~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 166 KVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA----EPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred hhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 333 2334467899999999999999987664322211 2345667888899977555443
No 84
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.45 E-value=4.5e-06 Score=84.76 Aligned_cols=153 Identities=16% Similarity=0.095 Sum_probs=89.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcC
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIAR 202 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 202 (854)
..+.+.|+|..|+|||+||+.+++... ... ...++++...... . + .. ..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~-~~~~~i~~~~~~~------~----~------------------~~-~~ 89 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADAS-YGG-RNARYLDAASPLL------A----F------------------DF-DP 89 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEehHHhHH------H----H------------------hh-cc
Confidence 345788999999999999999998421 111 2344555433110 0 0 01 12
Q ss_pred CeEEEEEecCCCcChhhHHHHHHhhcCC-CCCc-EEEEecccHHHHh--------hccCcceEecCCCCHHHHHHHHHHH
Q 003037 203 KKFLLVLDDVWTEDYNKWETFQRCLKNG-LRGS-KILVTTRKMTVAQ--------MMQSNDVILIRELSEQACWSLFEQL 272 (854)
Q Consensus 203 k~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs-~ilvTtR~~~v~~--------~~~~~~~~~l~~L~~~e~~~l~~~~ 272 (854)
..-+||+||+...+...-+.+...+... ..+. .+|+|++...... .+.....+++.++++++-..++.+.
T Consensus 90 ~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 90 EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH
Confidence 3347899999543323333444444321 1333 4677766433211 2233468899999998877777664
Q ss_pred hcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHHHhhh
Q 003037 273 AFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTIGSLL 310 (854)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~l 310 (854)
+...+. .--++....+++.+.|++..+..+-..+
T Consensus 170 ~~~~~v----~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 170 AAERGL----QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHcCC----CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 422111 1224566678888999999887776555
No 85
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.43 E-value=1.3e-07 Score=105.12 Aligned_cols=186 Identities=26% Similarity=0.332 Sum_probs=130.5
Q ss_pred CcccccCCCceEEEEecCCCCcccCchhhhhcCCC-cccEEEecCCCCccccccccccccccccccCCCceeeecCCCCc
Q 003037 474 PDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLT-CLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIE 552 (854)
Q Consensus 474 ~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~-~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~ 552 (854)
.......+.+..|.+.++. +.. ++.....+. +|+.|+++++. +..+|..++.+++|+.|++++|.+.
T Consensus 109 ~~~~~~~~~l~~L~l~~n~---i~~-i~~~~~~~~~nL~~L~l~~N~--------i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 109 ISELLELTNLTSLDLDNNN---ITD-IPPLIGLLKSNLKELDLSDNK--------IESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred chhhhcccceeEEecCCcc---ccc-Cccccccchhhcccccccccc--------hhhhhhhhhccccccccccCCchhh
Confidence 3444555788999999888 444 455456664 99999999999 9999888999999999999999999
Q ss_pred ccchhhhcCCCCcEEeecCcccccccccccccCCCCcccCceeecCCCCCCcccccccccCCceeEEecccCCCChhHHH
Q 003037 553 ELPETCCELFNVQTLEVLDCRSFRRLPQGFGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLGNVRDADEAK 632 (854)
Q Consensus 553 ~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~ 632 (854)
.+|...+.+.+|+.|++++|. +..+|..+..+..|..|..-... ....+
T Consensus 177 ~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~--~~~~~---------------------------- 225 (394)
T COG4886 177 DLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS--IIELL---------------------------- 225 (394)
T ss_pred hhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc--ceecc----------------------------
Confidence 999988899999999999998 89999877666667776221110 00001
Q ss_pred HhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCchhhcccCccEEEEecccCCCCC
Q 003037 633 SAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCDTM 712 (854)
Q Consensus 633 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l 712 (854)
..+.++.++..|.+..+ .....+..+..+++|+.|++ .++.... ++. ++.+.+|+.|+++++.....+
T Consensus 226 -~~~~~~~~l~~l~l~~n--------~~~~~~~~~~~l~~l~~L~~-s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 226 -SSLSNLKNLSGLELSNN--------KLEDLPESIGNLSNLETLDL-SNNQISS-ISS-LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred -hhhhhcccccccccCCc--------eeeeccchhccccccceecc-ccccccc-ccc-ccccCccCEEeccCccccccc
Confidence 11223333334443333 11122445566677888888 6666555 555 778888999999888776665
Q ss_pred CC
Q 003037 713 PP 714 (854)
Q Consensus 713 ~~ 714 (854)
+.
T Consensus 294 ~~ 295 (394)
T COG4886 294 PL 295 (394)
T ss_pred hh
Confidence 54
No 86
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.43 E-value=2.1e-06 Score=99.93 Aligned_cols=173 Identities=20% Similarity=0.288 Sum_probs=99.0
Q ss_pred CCccccchhHHH---HHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHH
Q 003037 96 VSEVRGRDEEKN---TLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIA 172 (854)
Q Consensus 96 ~~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 172 (854)
-++|||++..+. .+...+.. .+...+.|+|++|+||||||+.+++. ....| +.++......
T Consensus 27 ldd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f-----~~lna~~~~i--- 90 (725)
T PRK13341 27 LEEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANH--TRAHF-----SSLNAVLAGV--- 90 (725)
T ss_pred HHHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHH--hcCcc-----eeehhhhhhh---
Confidence 357899988774 45555542 24556789999999999999999984 33444 1111100000
Q ss_pred HHHHHHhcCCCCCCccHHHHHHHHHHHh--cCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEE--ecccHH--HH
Q 003037 173 KAIIEALEGSTPSLGELNSLLERIYASI--ARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILV--TTRKMT--VA 246 (854)
Q Consensus 173 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~--v~ 246 (854)
.+.........+.+ .+++.+|||||++.-....++.+...+. .|..++| ||.+.. +.
T Consensus 91 --------------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~ 153 (725)
T PRK13341 91 --------------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVN 153 (725)
T ss_pred --------------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhh
Confidence 01111122222211 2467799999997655556666665544 3454555 344432 22
Q ss_pred hh-ccCcceEecCCCCHHHHHHHHHHHhcCCC---CCCCchHHHHHHHHHHhhcCCCcH
Q 003037 247 QM-MQSNDVILIRELSEQACWSLFEQLAFFGR---PRSECEQLIEIGRKIVGKCKGLPL 301 (854)
Q Consensus 247 ~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~---~~~~~~~~~~~~~~I~~~~~GlPL 301 (854)
.. .+....+.+++|+.++...++.+.+.... .........+....|++.+.|.--
T Consensus 154 ~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 154 KALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 21 22346899999999999999987653100 001111224455678888888654
No 87
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=7.3e-06 Score=90.16 Aligned_cols=199 Identities=11% Similarity=0.138 Sum_probs=112.8
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEE-eCCccCHHHHHHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVC-VSDPFDEFRIAKA 174 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~ 174 (854)
-.+++|.+..++.|..++.... -...+.++|+.|+||||+|..+++...-...++...|.. +......-..-+.
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~ 89 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRD 89 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHH
Confidence 4689999999999998886432 244588999999999999999887421111111111110 0000000000011
Q ss_pred HHHHhcC-----CCCCCccHHHHHHHHHHHh-----cCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEec-ccH
Q 003037 175 IIEALEG-----STPSLGELNSLLERIYASI-----ARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTT-RKM 243 (854)
Q Consensus 175 i~~~l~~-----~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~ 243 (854)
+...... ........+++.+ +.+.+ .+.+-++|+|++..-....+..+...+......+.+|++| +..
T Consensus 90 ~~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~ 168 (397)
T PRK14955 90 FDAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELH 168 (397)
T ss_pred HhcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 1100000 0001111233322 22222 3556689999997655567888888887766677766555 433
Q ss_pred HHHhh-ccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHH
Q 003037 244 TVAQM-MQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAK 304 (854)
Q Consensus 244 ~v~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~ 304 (854)
.+... ......+++.+++.++..+.+...+-..+ .....+.+..|++.++|.+--+.
T Consensus 169 kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g----~~i~~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 169 KIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEG----ISVDADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred HhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHH
Confidence 34322 22245789999999999888877653211 11224567789999999775443
No 88
>PRK08727 hypothetical protein; Validated
Probab=98.41 E-value=8.5e-06 Score=82.61 Aligned_cols=149 Identities=15% Similarity=0.065 Sum_probs=88.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCC
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIARK 203 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 203 (854)
...+.|+|..|+|||+||+.+++. .......++++++.+ ....+. ..+ +.+ .+
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~~-----------------~~~-~~l-~~ 93 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRLR-----------------DAL-EAL-EG 93 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhHH-----------------HHH-HHH-hc
Confidence 345999999999999999999884 333333556665432 111111 111 111 23
Q ss_pred eEEEEEecCCCcC-hhhHHH-HHHhhcC-CCCCcEEEEecccH---------HHHhhccCcceEecCCCCHHHHHHHHHH
Q 003037 204 KFLLVLDDVWTED-YNKWET-FQRCLKN-GLRGSKILVTTRKM---------TVAQMMQSNDVILIRELSEQACWSLFEQ 271 (854)
Q Consensus 204 ~~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~l~~~ 271 (854)
.-+||+||+.... ...|.. +...+.. ...|..||+|++.. .+...+.....+++++++.++-.+++.+
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~ 173 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRE 173 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHH
Confidence 3589999995421 123432 3333322 12456799999853 2223334456899999999999999998
Q ss_pred HhcCCCCCCCchHHHHHHHHHHhhcCCCcHHH
Q 003037 272 LAFFGRPRSECEQLIEIGRKIVGKCKGLPLAA 303 (854)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai 303 (854)
++...+- ..-++...-|++.++|-.-.+
T Consensus 174 ~a~~~~l----~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 174 RAQRRGL----ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHcCC----CCCHHHHHHHHHhCCCCHHHH
Confidence 7753222 122445566777887766554
No 89
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=9.3e-06 Score=91.99 Aligned_cols=185 Identities=14% Similarity=0.130 Sum_probs=112.2
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccc-------------------cccCe
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVI-------------------NHFEK 156 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~f~~ 156 (854)
-.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+++..--. +.|..
T Consensus 15 f~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d 89 (527)
T PRK14969 15 FSELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVD 89 (527)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCc
Confidence 4678999999999999987432 34567899999999999999987631100 01112
Q ss_pred eEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEE
Q 003037 157 RIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKI 236 (854)
Q Consensus 157 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 236 (854)
.+++..+....+. .+++++..+.. .-..+++-++|+|++..-.......+...+......+.+
T Consensus 90 ~~ei~~~~~~~vd-~ir~l~~~~~~----------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~f 152 (527)
T PRK14969 90 LIEVDAASNTQVD-AMRELLDNAQY----------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKF 152 (527)
T ss_pred eeEeeccccCCHH-HHHHHHHHHhh----------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEE
Confidence 2222222111111 11122221110 011356779999999766666777888888776666766
Q ss_pred EEecccH-HHH-hhccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcH-HHHHH
Q 003037 237 LVTTRKM-TVA-QMMQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPL-AAKTI 306 (854)
Q Consensus 237 lvTtR~~-~v~-~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPL-ai~~~ 306 (854)
|++|.+. .+. ...+....+++++++.++..+.+.+.+...+. ....+..+.|++.++|.+- |+..+
T Consensus 153 IL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi----~~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 153 ILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI----PFDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred EEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 6665443 222 11223568899999999999888776532221 1123455678889999775 33333
No 90
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.40 E-value=1.2e-05 Score=91.64 Aligned_cols=199 Identities=14% Similarity=0.121 Sum_probs=116.4
Q ss_pred cCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccC--eeEEEEeCCccCHHHHH
Q 003037 95 DVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFE--KRIWVCVSDPFDEFRIA 172 (854)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~s~~~~~~~~~ 172 (854)
.-.++||.+..++.|...+.... -...+.++|+.|+||||+|+.+++..--..... ...+-.+... .--
T Consensus 22 ~f~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c----~~C 92 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVG----EHC 92 (598)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCccc----HHH
Confidence 34679999999999999987433 355688999999999999999987411110000 0000000000 001
Q ss_pred HHHHHHhcC-----CCCCCccHHHHH---HHHHH-HhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEec-cc
Q 003037 173 KAIIEALEG-----STPSLGELNSLL---ERIYA-SIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTT-RK 242 (854)
Q Consensus 173 ~~i~~~l~~-----~~~~~~~~~~~~---~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~ 242 (854)
+.|...-.. .......++++. +.+.. -..+++-++|+|++..........|...+......+++|++| ..
T Consensus 93 ~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~ 172 (598)
T PRK09111 93 QAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEI 172 (598)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCCh
Confidence 111110000 001112233322 22211 123456689999997666667788888887766677776655 33
Q ss_pred HHHHhh-ccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHH
Q 003037 243 MTVAQM-MQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTI 306 (854)
Q Consensus 243 ~~v~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~ 306 (854)
..+... .+....+++..++.++....+.+.+...+.. ...+....|++.++|.+.-+...
T Consensus 173 ~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~----i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 173 RKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE----VEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred hhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 333322 2345689999999999999998876432221 12355677899999988655443
No 91
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.40 E-value=1.1e-05 Score=82.05 Aligned_cols=154 Identities=14% Similarity=0.120 Sum_probs=91.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCC
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIARK 203 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 203 (854)
.+.+.|+|+.|+|||+|++.+++. ....-..+.++.+..... ...+.. +.+..
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~--------------------~~~~~~----~~~~~- 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW--------------------FVPEVL----EGMEQ- 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh--------------------hhHHHH----HHhhh-
Confidence 457899999999999999999884 222233455666542100 001111 11111
Q ss_pred eEEEEEecCCCcC-hhhHHH-HHHhhcCC-CCC-cEEEEecccH---------HHHhhccCcceEecCCCCHHHHHHHHH
Q 003037 204 KFLLVLDDVWTED-YNKWET-FQRCLKNG-LRG-SKILVTTRKM---------TVAQMMQSNDVILIRELSEQACWSLFE 270 (854)
Q Consensus 204 ~~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~g-s~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~l~~ 270 (854)
.-+|++||+.... ...|+. +...+... ..| .++|+||+.. .....+....+++++++++++-.+++.
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 2488999995421 134543 33333221 123 4799998754 233445556799999999999999998
Q ss_pred HHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHHHh
Q 003037 271 QLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTIGS 308 (854)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~ 308 (854)
+++...+- .--+++..-|++++.|..-++..+-.
T Consensus 178 ~~a~~~~~----~l~~~v~~~L~~~~~~d~r~l~~~l~ 211 (235)
T PRK08084 178 LRARLRGF----ELPEDVGRFLLKRLDREMRTLFMTLD 211 (235)
T ss_pred HHHHHcCC----CCCHHHHHHHHHhhcCCHHHHHHHHH
Confidence 86643221 12245666788888877665554433
No 92
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.38 E-value=5.3e-07 Score=91.25 Aligned_cols=90 Identities=22% Similarity=0.096 Sum_probs=61.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCc--cCHHHHHHHHHHHhcCCCCCCccHH------HHHH
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDP--FDEFRIAKAIIEALEGSTPSLGELN------SLLE 194 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~ 194 (854)
.-..++|+|++|+|||||++.++++.... +|+.++|+.+... .++.++++.+...+-....+..... ....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 45678899999999999999999974433 8999999997766 7899999998433322221111111 1122
Q ss_pred HHHHH-hcCCeEEEEEecCC
Q 003037 195 RIYAS-IARKKFLLVLDDVW 213 (854)
Q Consensus 195 ~l~~~-l~~k~~LlVlDdv~ 213 (854)
..... -.+++.++++|++.
T Consensus 94 ~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHCCCCEEEEEECHH
Confidence 22221 24899999999993
No 93
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.37 E-value=9.1e-08 Score=94.07 Aligned_cols=88 Identities=23% Similarity=0.139 Sum_probs=57.5
Q ss_pred cCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCchhhcccCccEEEEecccCCC--CCCC
Q 003037 637 EKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCD--TMPP 714 (854)
Q Consensus 637 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~--~l~~ 714 (854)
..+++|+.|++++| ....+..+-..+-|++.|.| .++.... + +.+..+-+|..|++++|++.. ....
T Consensus 326 a~L~~L~~LDLS~N--------~Ls~~~Gwh~KLGNIKtL~L-a~N~iE~-L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~ 394 (490)
T KOG1259|consen 326 AELPQLQLLDLSGN--------LLAECVGWHLKLGNIKTLKL-AQNKIET-L-SGLRKLYSLVNLDLSSNQIEELDEVNH 394 (490)
T ss_pred hhcccceEeecccc--------hhHhhhhhHhhhcCEeeeeh-hhhhHhh-h-hhhHhhhhheeccccccchhhHHHhcc
Confidence 34556666777766 22222222234567788888 5544332 2 346678889999999887643 5667
Q ss_pred CCCCCCCCEEEEcCCCCceEeC
Q 003037 715 LGKLPSLEILEIRGNWNVKRVG 736 (854)
Q Consensus 715 l~~L~~L~~L~L~~~~~l~~i~ 736 (854)
+|+||.|+.|.|.+|+ +..++
T Consensus 395 IG~LPCLE~l~L~~NP-l~~~v 415 (490)
T KOG1259|consen 395 IGNLPCLETLRLTGNP-LAGSV 415 (490)
T ss_pred cccccHHHHHhhcCCC-ccccc
Confidence 9999999999999998 44443
No 94
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=2.7e-05 Score=88.43 Aligned_cols=199 Identities=14% Similarity=0.122 Sum_probs=116.1
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAI 175 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 175 (854)
-.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+++..--....+ +-.++.. ...+.|
T Consensus 12 f~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pCg~C----~~C~~i 79 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATPCGVC----ESCVAL 79 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCccccc----HHHHHh
Confidence 4679999999999999987432 345678999999999999999887311000000 0000000 000000
Q ss_pred HHH---------hcC-CCCCCccHHHHHHHHHHH-hcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecc-cH
Q 003037 176 IEA---------LEG-STPSLGELNSLLERIYAS-IARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTR-KM 243 (854)
Q Consensus 176 ~~~---------l~~-~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR-~~ 243 (854)
... +.. ......++.++.+.+... ..+++-++|+|+++.-.......|+..+........+|++|. ..
T Consensus 80 ~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~ 159 (584)
T PRK14952 80 APNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPE 159 (584)
T ss_pred hcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 000 000 001111222222222211 235666899999987777788888888887766776665554 33
Q ss_pred HHHhh-ccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcH-HHHHHHhhh
Q 003037 244 TVAQM-MQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPL-AAKTIGSLL 310 (854)
Q Consensus 244 ~v~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPL-ai~~~~~~l 310 (854)
.+... .+....+++.+++.++..+.+...+...+... ..+....|++.++|.+- |+..+-.++
T Consensus 160 kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i----~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 160 KVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV----DDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred hhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 33322 33467899999999999888877654322111 13455678889999774 444444333
No 95
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.32 E-value=1.5e-05 Score=84.09 Aligned_cols=214 Identities=15% Similarity=0.123 Sum_probs=129.1
Q ss_pred cCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHH
Q 003037 95 DVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKA 174 (854)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 174 (854)
.+..++||+.|++.+..++...-. ....+-+.|.|-+|.|||.+...++.+..-...-..++.++...-.....++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 467799999999999999876554 456778999999999999999999986332222235577777766678888888
Q ss_pred HHHHhcCCCCCCccHHHHHHHHHHHhcC--CeEEEEEecCCCcChhhHHHHHHhhcCC-CCCcEEEEec---------cc
Q 003037 175 IIEALEGSTPSLGELNSLLERIYASIAR--KKFLLVLDDVWTEDYNKWETFQRCLKNG-LRGSKILVTT---------RK 242 (854)
Q Consensus 175 i~~~l~~~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~ilvTt---------R~ 242 (854)
|...+...........+.++.+.+...+ ..+|+|+|.+..-....-..+...|.+. -+++|+|+.- |.
T Consensus 226 I~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 8888732211111223445555554433 3689999998331111112233333332 2556655422 11
Q ss_pred HHHHhh--ccCcceEecCCCCHHHHHHHHHHHhcCCCCC-CCchHHHHHHHHHHhhcCCCcHHHHHHHhhh
Q 003037 243 MTVAQM--MQSNDVILIRELSEQACWSLFEQLAFFGRPR-SECEQLIEIGRKIVGKCKGLPLAAKTIGSLL 310 (854)
Q Consensus 243 ~~v~~~--~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~-~~~~~~~~~~~~I~~~~~GlPLai~~~~~~l 310 (854)
-..... ......+..+|.+.++..++|..+.-..... ..+..++-.|++++...|-+--|+.+.-+.+
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 111111 1123577888999999999998876422211 2234555555555555555555655554443
No 96
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.31 E-value=3e-05 Score=89.06 Aligned_cols=192 Identities=17% Similarity=0.187 Sum_probs=111.4
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccc---c-CeeEE-EEeCCccCHHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINH---F-EKRIW-VCVSDPFDEFR 170 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~---f-~~~~w-v~~s~~~~~~~ 170 (854)
-.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+++..--... + .|... -+....++..
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvi- 90 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDII- 90 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEE-
Confidence 4678999999999999997432 3566789999999999999988763110000 0 00000 0000000000
Q ss_pred HHHHHHHHhcC-CCCCCccHHHHHHHHHHH-hcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEE-ecccHHHHh
Q 003037 171 IAKAIIEALEG-STPSLGELNSLLERIYAS-IARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILV-TTRKMTVAQ 247 (854)
Q Consensus 171 ~~~~i~~~l~~-~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~v~~ 247 (854)
.+.. ......+++++.+.+... ..+++-++|+|++..-....+..++..+........+|+ |++...+..
T Consensus 91 -------eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~ 163 (725)
T PRK07133 91 -------EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPL 163 (725)
T ss_pred -------EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhH
Confidence 0000 000111122233222211 235667999999976666778888888876655665554 444444432
Q ss_pred -hccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHH
Q 003037 248 -MMQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAK 304 (854)
Q Consensus 248 -~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~ 304 (854)
.......+++.+++.++....+...+...+... ..+.++.|++.++|.+--+.
T Consensus 164 TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~i----d~eAl~~LA~lS~GslR~Al 217 (725)
T PRK07133 164 TILSRVQRFNFRRISEDEIVSRLEFILEKENISY----EKNALKLIAKLSSGSLRDAL 217 (725)
T ss_pred HHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHH
Confidence 234457899999999999988877553222111 13456778899999765333
No 97
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=2.4e-05 Score=88.44 Aligned_cols=199 Identities=14% Similarity=0.149 Sum_probs=114.5
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAI 175 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 175 (854)
-.++||.+..++.|...+.... -...+.++|+.|+||||+|+.+++..--....+.. .+..-...+.|
T Consensus 15 f~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~-------pCg~C~sC~~i 82 (624)
T PRK14959 15 FAEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGE-------PCNTCEQCRKV 82 (624)
T ss_pred HHHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCC-------CCcccHHHHHH
Confidence 4678999999888888886432 24678899999999999999988742111000000 00000001111
Q ss_pred HHHhcC-----CCCCCccHHH---HHHHHHH-HhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEeccc-HHH
Q 003037 176 IEALEG-----STPSLGELNS---LLERIYA-SIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRK-MTV 245 (854)
Q Consensus 176 ~~~l~~-----~~~~~~~~~~---~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v 245 (854)
...... .......+++ +.+.+.. -..+++-++|+|++..-....+..|...+........+|++|.. ..+
T Consensus 83 ~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kl 162 (624)
T PRK14959 83 TQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKF 162 (624)
T ss_pred hcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhh
Confidence 100000 0000011222 1111111 12456679999999766666777888887665455666665554 333
Q ss_pred Hhh-ccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCc-HHHHHHHhhh
Q 003037 246 AQM-MQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLP-LAAKTIGSLL 310 (854)
Q Consensus 246 ~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlP-Lai~~~~~~l 310 (854)
... ......+++++++.++....+...+...... ...+.++.|++.++|.+ .|+..+...+
T Consensus 163 l~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~----id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 163 PVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD----YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 322 2335688999999999999888765432211 22355677888999965 6776665544
No 98
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=3.6e-08 Score=96.95 Aligned_cols=116 Identities=14% Similarity=0.124 Sum_probs=74.5
Q ss_pred hhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCC---CCCchhhcccCccEEEEecccCCC
Q 003037 634 AELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGIS---GWPSWIVSLNKLKKLVLYQFYLCD 710 (854)
Q Consensus 634 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~---~lp~~~~~l~~L~~L~L~~~~~~~ 710 (854)
..+.+++.|.+|+|+||+... . ........+ -++|..|+| +||...- .+..-...+++|..|+|++|....
T Consensus 254 ll~~scs~L~~LNlsWc~l~~-~--~Vtv~V~hi--se~l~~LNl-sG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~ 327 (419)
T KOG2120|consen 254 LLLSSCSRLDELNLSWCFLFT-E--KVTVAVAHI--SETLTQLNL-SGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK 327 (419)
T ss_pred HHHHhhhhHhhcCchHhhccc-h--hhhHHHhhh--chhhhhhhh-hhhHhhhhhhHHHHHHHhCCceeeeccccccccC
Confidence 346678889999999983211 0 011112222 368999999 7764321 011112379999999999997655
Q ss_pred C--CCCCCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCCCccceeeccccc
Q 003037 711 T--MPPLGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLKQVLFYNIC 772 (854)
Q Consensus 711 ~--l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 772 (854)
. +..+.+++.|++|.++.|..+ +|..++. .+..|+|.+|++.+|-
T Consensus 328 ~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~---------------l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 328 NDCFQEFFKFNYLQHLSLSRCYDI--IPETLLE---------------LNSKPSLVYLDVFGCV 374 (419)
T ss_pred chHHHHHHhcchheeeehhhhcCC--ChHHeee---------------eccCcceEEEEecccc
Confidence 3 334778999999999999843 3443332 2357888888888763
No 99
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=3.4e-05 Score=84.51 Aligned_cols=183 Identities=15% Similarity=0.164 Sum_probs=107.7
Q ss_pred cCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccc------cccCeeE-EEEeCCccC
Q 003037 95 DVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVI------NHFEKRI-WVCVSDPFD 167 (854)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~------~~f~~~~-wv~~s~~~~ 167 (854)
.-.+++|.+..++.+...+.... -.+.+.++|+.|+||||+|+.+.+...-. ..|...+ -+.......
T Consensus 15 ~~~~iig~~~~~~~l~~~i~~~~-----~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 89 (367)
T PRK14970 15 TFDDVVGQSHITNTLLNAIENNH-----LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNS 89 (367)
T ss_pred cHHhcCCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCC
Confidence 34678999999999999997422 35688899999999999999987742110 1121111 111111111
Q ss_pred HHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecc-cHHHH
Q 003037 168 EFRIAKAIIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTR-KMTVA 246 (854)
Q Consensus 168 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR-~~~v~ 246 (854)
. .....+++.+... -..+++-++|+|++.......+..+...+......+.+|++|. ...+.
T Consensus 90 ~-~~i~~l~~~~~~~----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~ 152 (367)
T PRK14970 90 V-DDIRNLIDQVRIP----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKII 152 (367)
T ss_pred H-HHHHHHHHHHhhc----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCC
Confidence 1 1111222221100 1124556899999865444567777777765445556665553 22222
Q ss_pred h-hccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHH
Q 003037 247 Q-MMQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAA 303 (854)
Q Consensus 247 ~-~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai 303 (854)
. .......++.++++.++....+...+...+..- ..+.+..|++.++|.+-.+
T Consensus 153 ~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i----~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 153 PTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKF----EDDALHIIAQKADGALRDA 206 (367)
T ss_pred HHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHhCCCCHHHH
Confidence 2 223345889999999999998887664322211 2356677888899866533
No 100
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.29 E-value=7.5e-06 Score=83.08 Aligned_cols=159 Identities=20% Similarity=0.191 Sum_probs=98.0
Q ss_pred CCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHh
Q 003037 121 QNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASI 200 (854)
Q Consensus 121 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 200 (854)
+++..-+.+||++|+||||||+.+....+... ..||..|-...-..-.++|+++-.. ...+
T Consensus 159 q~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~---------------~~~l 219 (554)
T KOG2028|consen 159 QNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN---------------EKSL 219 (554)
T ss_pred cCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH---------------HHhh
Confidence 34677788999999999999999998644333 4577776554444444555543211 1224
Q ss_pred cCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEE--ecccHHH---HhhccCcceEecCCCCHHHHHHHHHHHhc-
Q 003037 201 ARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILV--TTRKMTV---AQMMQSNDVILIRELSEQACWSLFEQLAF- 274 (854)
Q Consensus 201 ~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~v---~~~~~~~~~~~l~~L~~~e~~~l~~~~~~- 274 (854)
.++|.+|++|.|+.-+..+-+. ++|.-..|.-++| ||-++.. +..+....++.|+.|+.++...++.+...
T Consensus 220 ~krkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~ 296 (554)
T KOG2028|consen 220 TKRKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIAS 296 (554)
T ss_pred hcceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHh
Confidence 5789999999996533333222 3555556776665 5665532 22234567999999999999998877332
Q ss_pred -CCCCC----CCc---hHHHHHHHHHHhhcCCCcH
Q 003037 275 -FGRPR----SEC---EQLIEIGRKIVGKCKGLPL 301 (854)
Q Consensus 275 -~~~~~----~~~---~~~~~~~~~I~~~~~GlPL 301 (854)
+.... .+. .....+.+-++..|+|-.-
T Consensus 297 l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 297 LGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred hccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 11110 111 1223455556777777653
No 101
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=4.3e-05 Score=88.24 Aligned_cols=196 Identities=14% Similarity=0.147 Sum_probs=114.0
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAI 175 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 175 (854)
-.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+++......... ....+..-...+.+
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i 83 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAI 83 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHH
Confidence 4689999999999998886432 345678999999999999999987421000000 00001111122222
Q ss_pred HHHhcCC-----CCCCccHHHHH---HHHHHH-hcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEeccc-HHH
Q 003037 176 IEALEGS-----TPSLGELNSLL---ERIYAS-IARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRK-MTV 245 (854)
Q Consensus 176 ~~~l~~~-----~~~~~~~~~~~---~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v 245 (854)
......+ .......+++. +.+... ..+++-++|+|++..-.....+.|...+......+.+|++|.+ ..+
T Consensus 84 ~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kl 163 (585)
T PRK14950 84 AEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKV 163 (585)
T ss_pred hcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhh
Confidence 2111110 00111222222 211111 1245678999999665556677788877776666677666643 233
Q ss_pred Hh-hccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHH
Q 003037 246 AQ-MMQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTI 306 (854)
Q Consensus 246 ~~-~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~ 306 (854)
.. .......+.+..++.++....+...+...+.. ...+.+..|++.++|.+..+...
T Consensus 164 l~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~----i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 164 PATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN----LEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred hHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 22 22335678899999999998888766432211 12355678899999988655443
No 102
>PRK05642 DNA replication initiation factor; Validated
Probab=98.28 E-value=2.3e-05 Score=79.46 Aligned_cols=156 Identities=18% Similarity=0.190 Sum_probs=93.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCC
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIARK 203 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 203 (854)
...+.|+|..|+|||.||+.+++. ....-..++|++..+ +... . ..+.+.+.+-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~------~~~~--------------~----~~~~~~~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAE------LLDR--------------G----PELLDNLEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHH------HHhh--------------h----HHHHHhhhhC
Confidence 367899999999999999999874 222223566776432 1111 0 1122223322
Q ss_pred eEEEEEecCCCcC-hhhHHH-HHHhhcC-CCCCcEEEEecccHHH---------HhhccCcceEecCCCCHHHHHHHHHH
Q 003037 204 KFLLVLDDVWTED-YNKWET-FQRCLKN-GLRGSKILVTTRKMTV---------AQMMQSNDVILIRELSEQACWSLFEQ 271 (854)
Q Consensus 204 ~~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~ilvTtR~~~v---------~~~~~~~~~~~l~~L~~~e~~~l~~~ 271 (854)
. +||+||+.... ...|+. +...+.. ...|.+||+|++.... ...+.....+++++++.++-.+++..
T Consensus 99 d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 E-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred C-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 2 68899995321 234543 4444432 2246678998875321 12233346889999999999999986
Q ss_pred HhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHHHhhh
Q 003037 272 LAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTIGSLL 310 (854)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~l 310 (854)
++...+- ..-+++..-|++++.|-.-.+..+-..|
T Consensus 178 ka~~~~~----~l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 178 RASRRGL----HLTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHcCC----CCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 6643221 1114666778888888776665544433
No 103
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.27 E-value=1.1e-06 Score=68.28 Aligned_cols=58 Identities=22% Similarity=0.370 Sum_probs=47.1
Q ss_pred CcccEEEecCCCCccccccccccccc-cccccCCCceeeecCCCCcccch-hhhcCCCCcEEeecCcc
Q 003037 508 TCLRTLKITGISGEKRYFRIIVEIPK-EIKKLIHLRFLKLVWLDIEELPE-TCCELFNVQTLEVLDCR 573 (854)
Q Consensus 508 ~~Lr~L~L~~~~~~~~~~~~i~~lP~-~i~~L~~L~~L~L~~~~i~~lP~-~i~~L~~L~~L~l~~~~ 573 (854)
++|++|++++|. +..+|. .+.++++|++|++++|.++.+|+ .+.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~--------l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNK--------LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSST--------ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCC--------CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 468888888887 888874 66788888888888888888775 57888888888888876
No 104
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.27 E-value=2.8e-05 Score=91.94 Aligned_cols=178 Identities=12% Similarity=0.120 Sum_probs=112.9
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhcccccccc---------------------
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHF--------------------- 154 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--------------------- 154 (854)
-.++||.+..++.|...+.... -...+.++|..|+||||+|+.+.+...-....
T Consensus 14 f~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~ 88 (824)
T PRK07764 14 FAEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGS 88 (824)
T ss_pred HHHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCC
Confidence 4679999999999999987432 34567899999999999999988742110100
Q ss_pred CeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHH---HHH-HHhcCCeEEEEEecCCCcChhhHHHHHHhhcCC
Q 003037 155 EKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLE---RIY-ASIARKKFLLVLDDVWTEDYNKWETFQRCLKNG 230 (854)
Q Consensus 155 ~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~---~l~-~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~ 230 (854)
..++++.... ...++++.+ .+. .-..++.-++|||+++......+..|+..+...
T Consensus 89 ~dv~eidaas---------------------~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEp 147 (824)
T PRK07764 89 LDVTEIDAAS---------------------HGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEP 147 (824)
T ss_pred CcEEEecccc---------------------cCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCC
Confidence 0011111111 112222222 111 113456668999999877777888899988877
Q ss_pred CCCcEEEEeccc-HHHHhh-ccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHH
Q 003037 231 LRGSKILVTTRK-MTVAQM-MQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAA 303 (854)
Q Consensus 231 ~~gs~ilvTtR~-~~v~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai 303 (854)
...+.+|++|.+ ..+... .+....|++..++.++..+++.+..-..+. ....+....|++.++|.+..+
T Consensus 148 P~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv----~id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 148 PEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV----PVEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred CCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 677777665543 334332 334678999999999999888775532221 112344567889999988444
No 105
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=6.5e-05 Score=84.09 Aligned_cols=185 Identities=12% Similarity=0.129 Sum_probs=111.1
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhcccc--c-----------------cccCe
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDV--I-----------------NHFEK 156 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~-----------------~~f~~ 156 (854)
-.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.++...-- . +.|..
T Consensus 15 f~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d 89 (486)
T PRK14953 15 FKEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPD 89 (486)
T ss_pred HHHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCc
Confidence 4578999999999999997432 3456778999999999999988773110 0 00111
Q ss_pred eEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHH-HhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcE
Q 003037 157 RIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYA-SIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSK 235 (854)
Q Consensus 157 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 235 (854)
.+++..+... ...+++.+.+.+.. -..+++-++|+|+++.-.......+...+........
T Consensus 90 ~~eidaas~~------------------gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v 151 (486)
T PRK14953 90 LIEIDAASNR------------------GIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTI 151 (486)
T ss_pred EEEEeCccCC------------------CHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 1222111111 01112222222211 1235677999999976555667778887776655565
Q ss_pred EEEec-ccHHHHhh-ccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHHH
Q 003037 236 ILVTT-RKMTVAQM-MQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTIG 307 (854)
Q Consensus 236 ilvTt-R~~~v~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~ 307 (854)
+|++| +...+... ......+.+.+++.++....+...+-..+... ..+.+..|++.++|.+..+....
T Consensus 152 ~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~i----d~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 152 FILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEY----EEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 65555 43333322 23356899999999999988887654322111 23456668888999776554443
No 106
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.26 E-value=1.9e-05 Score=84.73 Aligned_cols=154 Identities=14% Similarity=0.115 Sum_probs=91.0
Q ss_pred cccccCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHH
Q 003037 91 TSLIDVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFR 170 (854)
Q Consensus 91 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 170 (854)
..|..-.+++|.++..+.+..++.... -..++.++|++|+||||+|+.+++. ... ....++.+. ....
T Consensus 15 yrP~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~lll~G~~G~GKT~la~~l~~~--~~~---~~~~i~~~~-~~~~- 82 (316)
T PHA02544 15 YRPSTIDECILPAADKETFKSIVKKGR-----IPNMLLHSPSPGTGKTTVAKALCNE--VGA---EVLFVNGSD-CRID- 82 (316)
T ss_pred cCCCcHHHhcCcHHHHHHHHHHHhcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH--hCc---cceEeccCc-ccHH-
Confidence 334445789999999999999987422 3567888999999999999999884 221 223444443 1211
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCc-ChhhHHHHHHhhcCCCCCcEEEEecccHHHH-h-
Q 003037 171 IAKAIIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTE-DYNKWETFQRCLKNGLRGSKILVTTRKMTVA-Q- 247 (854)
Q Consensus 171 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~-~- 247 (854)
..+..+...... ..+.+.+-++|+||+... .......+...+.....++++|+||...... .
T Consensus 83 ~i~~~l~~~~~~---------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~ 147 (316)
T PHA02544 83 FVRNRLTRFAST---------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEP 147 (316)
T ss_pred HHHHHHHHHHHh---------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHH
Confidence 111111111000 001234568999999654 2233444555566556778899888654311 1
Q ss_pred hccCcceEecCCCCHHHHHHHHHH
Q 003037 248 MMQSNDVILIRELSEQACWSLFEQ 271 (854)
Q Consensus 248 ~~~~~~~~~l~~L~~~e~~~l~~~ 271 (854)
..+....+.++..+.++..+++..
T Consensus 148 l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 148 LRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred HHhhceEEEeCCCCHHHHHHHHHH
Confidence 112234677777778777766543
No 107
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=4.7e-05 Score=87.15 Aligned_cols=202 Identities=11% Similarity=0.149 Sum_probs=113.1
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEE-eCCccCHHHHHHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVC-VSDPFDEFRIAKA 174 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~ 174 (854)
-.++||.+..+..|...+.... -...+.++|+.|+||||+|+.+++..--....+...|-. +......-...+.
T Consensus 15 f~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~ 89 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRD 89 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHH
Confidence 4679999999999999886432 245588999999999999988887421111110001110 0000000000111
Q ss_pred HHHHhcC-----CCCCCccHHHHHHHHHHH----hcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEec-ccHH
Q 003037 175 IIEALEG-----STPSLGELNSLLERIYAS----IARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTT-RKMT 244 (854)
Q Consensus 175 i~~~l~~-----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~ 244 (854)
+...-.. +......++++...+... ..+.+-++|+|+++.-.....+.|...+......+.+|++| +...
T Consensus 90 ~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~k 169 (620)
T PRK14954 90 FDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (620)
T ss_pred HhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 1000000 000111133333222111 23556688999997666667788888888766666665554 4333
Q ss_pred HHh-hccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcH-HHHHH
Q 003037 245 VAQ-MMQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPL-AAKTI 306 (854)
Q Consensus 245 v~~-~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPL-ai~~~ 306 (854)
+.. .......+++.+++.++....+.+.+...+. ....+.++.|++.++|..- |+..+
T Consensus 170 Ll~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi----~I~~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 170 IPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI----QIDADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred hhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 332 2344678999999999998888775532221 1124566778999999654 44433
No 108
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.25 E-value=4.9e-06 Score=89.72 Aligned_cols=120 Identities=13% Similarity=0.114 Sum_probs=76.7
Q ss_pred CccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHH
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAII 176 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 176 (854)
.++++.++.++.+...|.. .+.+.++|++|+|||++|+.+++.......|+.+.||.+++.++..+.+..+-
T Consensus 175 ~d~~i~e~~le~l~~~L~~--------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC
Confidence 4588899999999999873 34578899999999999999998644445677888999998887666543221
Q ss_pred HHhcCCCCCCccHH-HHHHHHHHHhc--CCeEEEEEecCCCcChhh-HHHHHHhhc
Q 003037 177 EALEGSTPSLGELN-SLLERIYASIA--RKKFLLVLDDVWTEDYNK-WETFQRCLK 228 (854)
Q Consensus 177 ~~l~~~~~~~~~~~-~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~-~~~l~~~l~ 228 (854)
.....-.-.. ...+.+.+... ++++++|+|++-..+... +..+...+.
T Consensus 247 ----P~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 247 ----PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred ----CCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 1100000001 11222222222 468999999995544332 445555444
No 109
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.25 E-value=4.6e-08 Score=104.51 Aligned_cols=106 Identities=24% Similarity=0.379 Sum_probs=91.8
Q ss_pred CCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccccCCCceeeecCCCCc
Q 003037 473 FPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIE 552 (854)
Q Consensus 473 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~ 552 (854)
+|.....+..|..+.+..|. +.. +|..+.++..|.+|+|+.|+ +..+|..++.|+ |+.|-+++|+++
T Consensus 90 lp~~~~~f~~Le~liLy~n~---~r~-ip~~i~~L~~lt~l~ls~Nq--------lS~lp~~lC~lp-Lkvli~sNNkl~ 156 (722)
T KOG0532|consen 90 LPEEACAFVSLESLILYHNC---IRT-IPEAICNLEALTFLDLSSNQ--------LSHLPDGLCDLP-LKVLIVSNNKLT 156 (722)
T ss_pred CchHHHHHHHHHHHHHHhcc---cee-cchhhhhhhHHHHhhhccch--------hhcCChhhhcCc-ceeEEEecCccc
Confidence 56666777778888887776 333 67789999999999999999 899999988765 999999999999
Q ss_pred ccchhhhcCCCCcEEeecCcccccccccccccCCCCcccC
Q 003037 553 ELPETCCELFNVQTLEVLDCRSFRRLPQGFGKLVNLRNLS 592 (854)
Q Consensus 553 ~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~ 592 (854)
.+|+.|+.+..|..||.+.|. +..+|..++.|.+|+.|.
T Consensus 157 ~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~ 195 (722)
T KOG0532|consen 157 SLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLN 195 (722)
T ss_pred cCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHH
Confidence 999999999999999999998 899999999998888883
No 110
>PF14516 AAA_35: AAA-like domain
Probab=98.25 E-value=8.3e-05 Score=79.60 Aligned_cols=204 Identities=12% Similarity=0.094 Sum_probs=120.5
Q ss_pred cccCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCc-----cC
Q 003037 93 LIDVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDP-----FD 167 (854)
Q Consensus 93 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-----~~ 167 (854)
+.+.+-+|+|...-+++.+.+.. ....+.|.|+-.+|||+|...+.+..+.. .+ .++++++..- .+
T Consensus 7 ~~~~~~Yi~R~~~e~~~~~~i~~-------~G~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~ 77 (331)
T PF14516_consen 7 PLDSPFYIERPPAEQECYQEIVQ-------PGSYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSD 77 (331)
T ss_pred CCCCCcccCchHHHHHHHHHHhc-------CCCEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCC
Confidence 34566788999677777777753 24578999999999999999988753322 33 5567776542 24
Q ss_pred HHHHHHHHHHHhcCCCC-----------CCccHHHHHHHHHHHh---cCCeEEEEEecCCCcC--hhhHHHHHHhhc---
Q 003037 168 EFRIAKAIIEALEGSTP-----------SLGELNSLLERIYASI---ARKKFLLVLDDVWTED--YNKWETFQRCLK--- 228 (854)
Q Consensus 168 ~~~~~~~i~~~l~~~~~-----------~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~--~~~~~~l~~~l~--- 228 (854)
....++.++..+...-. ...........+.+.+ .+++.+|+||++..-- ....+++...+.
T Consensus 78 ~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~ 157 (331)
T PF14516_consen 78 LEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWY 157 (331)
T ss_pred HHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHH
Confidence 55556555555533211 1112223334444432 2689999999984311 111122222222
Q ss_pred C-CC-----CCcEEEEe-cccHHHHhh-----ccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhc
Q 003037 229 N-GL-----RGSKILVT-TRKMTVAQM-----MQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKC 296 (854)
Q Consensus 229 ~-~~-----~gs~ilvT-tR~~~v~~~-----~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~ 296 (854)
. .. ..-++++. +........ +.....+.|++++.+|...|...+... -.. ...++|...+
T Consensus 158 ~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~----~~~----~~~~~l~~~t 229 (331)
T PF14516_consen 158 EQRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE----FSQ----EQLEQLMDWT 229 (331)
T ss_pred HhcccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc----CCH----HHHHHHHHHH
Confidence 1 11 11122222 211111111 222458999999999999999876421 111 2277899999
Q ss_pred CCCcHHHHHHHhhhccC
Q 003037 297 KGLPLAAKTIGSLLRFK 313 (854)
Q Consensus 297 ~GlPLai~~~~~~l~~~ 313 (854)
||+|..+..++..+...
T Consensus 230 gGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 230 GGHPYLVQKACYLLVEE 246 (331)
T ss_pred CCCHHHHHHHHHHHHHc
Confidence 99999999999999653
No 111
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.24 E-value=1.7e-05 Score=86.46 Aligned_cols=179 Identities=15% Similarity=0.182 Sum_probs=99.3
Q ss_pred CCccccchhHHHHHHHHhcccccc-------cCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSE-------QQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDE 168 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 168 (854)
..++.|+++++++|.+.+...-.. +....+-+.|+|++|+|||++|+++++. ....| +.+..
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~---- 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG---- 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch----
Confidence 346899999999998876432110 0123556899999999999999999984 33333 22221
Q ss_pred HHHHHHHHHHhcCCCCCCccHHHHHHHHHHHh-cCCeEEEEEecCCCc-----------ChhhHHHHHHhh---cC--CC
Q 003037 169 FRIAKAIIEALEGSTPSLGELNSLLERIYASI-ARKKFLLVLDDVWTE-----------DYNKWETFQRCL---KN--GL 231 (854)
Q Consensus 169 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~-----------~~~~~~~l~~~l---~~--~~ 231 (854)
..+.... ++ ........+.+.. ...+.+|+|||++.- +......+...+ .. ..
T Consensus 190 ~~l~~~~---~g-------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 259 (364)
T TIGR01242 190 SELVRKY---IG-------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR 259 (364)
T ss_pred HHHHHHh---hh-------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC
Confidence 1111111 00 1111222222222 346789999998531 111222233332 21 12
Q ss_pred CCcEEEEecccHHHHh-hc----cCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCc
Q 003037 232 RGSKILVTTRKMTVAQ-MM----QSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLP 300 (854)
Q Consensus 232 ~gs~ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlP 300 (854)
.+.+||.||....... .+ .-...+.+...+.++..++|..++..... .....+ ..+++.+.|..
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l-~~~~~~----~~la~~t~g~s 328 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKL-AEDVDL----EAIAKMTEGAS 328 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCC-CccCCH----HHHHHHcCCCC
Confidence 4667888887543221 11 12457889999999999999887643221 111223 34666676654
No 112
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=5.1e-05 Score=84.38 Aligned_cols=183 Identities=16% Similarity=0.193 Sum_probs=110.0
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhcccccc---------------------cc
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVIN---------------------HF 154 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---------------------~f 154 (854)
-.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+++..--.. ++
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~ 90 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSL 90 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCC
Confidence 4689999999999999986432 246688999999999999988877311100 11
Q ss_pred CeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHH-HhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCC
Q 003037 155 EKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYA-SIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRG 233 (854)
Q Consensus 155 ~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 233 (854)
+ .+++........ .++..+.+.+.. -..+.+-++|+|++..........+...+......
T Consensus 91 d-~~~i~g~~~~gi------------------d~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~ 151 (451)
T PRK06305 91 D-VLEIDGASHRGI------------------EDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQH 151 (451)
T ss_pred c-eEEeeccccCCH------------------HHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCC
Confidence 1 111110000001 111111111111 12356678999998654445667788877776566
Q ss_pred cEEEEeccc-HHHHh-hccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcH-HHHHH
Q 003037 234 SKILVTTRK-MTVAQ-MMQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPL-AAKTI 306 (854)
Q Consensus 234 s~ilvTtR~-~~v~~-~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPL-ai~~~ 306 (854)
..+|++|.. ..+.. .......+++.+++.++....+...+-..+. ....+.+..|++.++|.+- |+..+
T Consensus 152 ~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~----~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 152 VKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI----ETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred ceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 667766643 22222 2233568999999999999888876532221 1224566778999999764 44443
No 113
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=8.3e-05 Score=83.16 Aligned_cols=181 Identities=13% Similarity=0.102 Sum_probs=114.6
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhcccc--ccc----------------c-Ce
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDV--INH----------------F-EK 156 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~----------------f-~~ 156 (854)
-.++||-+..++.|...+.... -..++.++|+.|+||||+|+.+++..-- ... + ..
T Consensus 13 fdeiiGqe~v~~~L~~~I~~gr-----l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d 87 (535)
T PRK08451 13 FDELIGQESVSKTLSLALDNNR-----LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID 87 (535)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe
Confidence 4679999999999999986432 3556789999999999999887763110 000 0 01
Q ss_pred eEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHH----hcCCeEEEEEecCCCcChhhHHHHHHhhcCCCC
Q 003037 157 RIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYAS----IARKKFLLVLDDVWTEDYNKWETFQRCLKNGLR 232 (854)
Q Consensus 157 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 232 (854)
++.+..+.. ..++++.+.+... ..+++-++|+|++.....+....++..+.....
T Consensus 88 v~eldaas~---------------------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~ 146 (535)
T PRK08451 88 IIEMDAASN---------------------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPS 146 (535)
T ss_pred EEEeccccc---------------------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCC
Confidence 112211111 1122322222210 124566899999987777778888888887767
Q ss_pred CcEEEEecccH-HHHh-hccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHH
Q 003037 233 GSKILVTTRKM-TVAQ-MMQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTI 306 (854)
Q Consensus 233 gs~ilvTtR~~-~v~~-~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~ 306 (854)
.+++|++|.+. .+.. ..+....+++.+++.++....+...+...+.. ...+.++.|++.++|.+.-+..+
T Consensus 147 ~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~----i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 147 YVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS----YEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred ceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCcHHHHHHH
Confidence 77777777653 2221 22335689999999999999887765432221 12356677899999988555444
No 114
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.22 E-value=3.7e-07 Score=89.88 Aligned_cols=80 Identities=26% Similarity=0.315 Sum_probs=43.2
Q ss_pred CCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCchhhcccCccEEEEecccCCCCCCCCCCC
Q 003037 639 KKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCDTMPPLGKL 718 (854)
Q Consensus 639 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~L 718 (854)
.+.++.|+++.|+ ......+..+++|+.|+| +++.... +-.|-..+.|.+.|.|+.|. .+++..+++|
T Consensus 306 ~Pkir~L~lS~N~---------i~~v~nLa~L~~L~~LDL-S~N~Ls~-~~Gwh~KLGNIKtL~La~N~-iE~LSGL~KL 373 (490)
T KOG1259|consen 306 APKLRRLILSQNR---------IRTVQNLAELPQLQLLDL-SGNLLAE-CVGWHLKLGNIKTLKLAQNK-IETLSGLRKL 373 (490)
T ss_pred ccceeEEeccccc---------eeeehhhhhcccceEeec-ccchhHh-hhhhHhhhcCEeeeehhhhh-HhhhhhhHhh
Confidence 4555666666551 112233455566666666 4444333 45555566666666666653 3445556666
Q ss_pred CCCCEEEEcCCC
Q 003037 719 PSLEILEIRGNW 730 (854)
Q Consensus 719 ~~L~~L~L~~~~ 730 (854)
-+|.+|++++|.
T Consensus 374 YSLvnLDl~~N~ 385 (490)
T KOG1259|consen 374 YSLVNLDLSSNQ 385 (490)
T ss_pred hhheeccccccc
Confidence 666666666654
No 115
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.21 E-value=6.5e-05 Score=75.20 Aligned_cols=162 Identities=13% Similarity=0.152 Sum_probs=94.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhcccccccc--CeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHF--EKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASI 200 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 200 (854)
....+.|+|..|+|||.|.+++++. ..+.. ..+++++ ..+....+...+... ..+ .+++.+
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~-----~~~----~~~~~~ 95 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYLS------AEEFIREFADALRDG-----EIE----EFKDRL 95 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEEE------HHHHHHHHHHHHHTT-----SHH----HHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH--HHhccccccceeec------HHHHHHHHHHHHHcc-----cch----hhhhhh
Confidence 3445789999999999999999985 33222 2344553 445566666655431 222 233444
Q ss_pred cCCeEEEEEecCCCcCh-hhHHH-HHHhhcC-CCCCcEEEEecccH---------HHHhhccCcceEecCCCCHHHHHHH
Q 003037 201 ARKKFLLVLDDVWTEDY-NKWET-FQRCLKN-GLRGSKILVTTRKM---------TVAQMMQSNDVILIRELSEQACWSL 268 (854)
Q Consensus 201 ~~k~~LlVlDdv~~~~~-~~~~~-l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~l 268 (854)
+ .-=+|++||++.-.. ..|.. +...+.. ...|.+||+|++.. .....+...-.+++++.+.++..++
T Consensus 96 ~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~i 174 (219)
T PF00308_consen 96 R-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRI 174 (219)
T ss_dssp C-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHH
T ss_pred h-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHH
Confidence 4 345889999955322 23333 3333332 12466899999643 2333445567899999999999999
Q ss_pred HHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHH
Q 003037 269 FEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTI 306 (854)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~ 306 (854)
+.+.+...+.. --++++.-|++++.+..-.+..+
T Consensus 175 l~~~a~~~~~~----l~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 175 LQKKAKERGIE----LPEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHHHHHTT------S-HHHHHHHHHHTTSSHHHHHHH
T ss_pred HHHHHHHhCCC----CcHHHHHHHHHhhcCCHHHHHHH
Confidence 99887543322 22455666777776665555443
No 116
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.20 E-value=3.5e-06 Score=88.66 Aligned_cols=101 Identities=18% Similarity=0.086 Sum_probs=65.7
Q ss_pred HHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCcc--CHHHHHHHHHHHhcCCCC
Q 003037 107 NTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPF--DEFRIAKAIIEALEGSTP 184 (854)
Q Consensus 107 ~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~ 184 (854)
-++++.+..-. +-....|+|++|+||||||+++|++.... +|+.++||.+.+.. ++.++++.+...+-....
T Consensus 157 ~rvID~l~PIG-----kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~ 230 (416)
T PRK09376 157 TRIIDLIAPIG-----KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTF 230 (416)
T ss_pred eeeeeeecccc-----cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECC
Confidence 35566665433 44557899999999999999999974433 89999999998877 677777777632222222
Q ss_pred CCccHHH------HHHHHHHH-hcCCeEEEEEecCC
Q 003037 185 SLGELNS------LLERIYAS-IARKKFLLVLDDVW 213 (854)
Q Consensus 185 ~~~~~~~------~~~~l~~~-l~~k~~LlVlDdv~ 213 (854)
+...... ..+..... -.++.++|++|++.
T Consensus 231 d~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 231 DEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChH
Confidence 2111111 11111111 25799999999993
No 117
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=7.7e-05 Score=85.94 Aligned_cols=181 Identities=15% Similarity=0.130 Sum_probs=112.6
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccc---------------------ccccc
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNND---------------------VINHF 154 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---------------------~~~~f 154 (854)
-.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+..... ...+|
T Consensus 16 f~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~ 90 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSY 90 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCC
Confidence 4679999999999999987432 356688999999999999988776311 00122
Q ss_pred CeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCc
Q 003037 155 EKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGS 234 (854)
Q Consensus 155 ~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 234 (854)
+ +..+..+....+.. +++++.++... -..+++-++|+|++..-....+..|...+......+
T Consensus 91 n-~~~ld~~~~~~vd~-Ir~li~~~~~~----------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~t 152 (614)
T PRK14971 91 N-IHELDAASNNSVDD-IRNLIEQVRIP----------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYA 152 (614)
T ss_pred c-eEEecccccCCHHH-HHHHHHHHhhC----------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCe
Confidence 2 11222211111111 11111111110 012455688999997766677888998888776677
Q ss_pred EEEEec-ccHHHHh-hccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHH
Q 003037 235 KILVTT-RKMTVAQ-MMQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAA 303 (854)
Q Consensus 235 ~ilvTt-R~~~v~~-~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai 303 (854)
.+|++| +...+.. .......+++.+++.++....+...+...+.. ...+.+..|++.++|..--+
T Consensus 153 ifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~----i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 153 IFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT----AEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred EEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHH
Confidence 766555 4343333 23446789999999999999988765432221 12345677889999976544
No 118
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.19 E-value=3.4e-05 Score=76.32 Aligned_cols=178 Identities=18% Similarity=0.182 Sum_probs=106.6
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAI 175 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 175 (854)
-.+|||.++.++++.-.+...... ++..-.|.++|++|.||||||.-+++. +...+ -++.+.......-+..+
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~r-~e~lDHvLl~GPPGlGKTTLA~IIA~E--mgvn~----k~tsGp~leK~gDlaai 97 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKKR-GEALDHVLLFGPPGLGKTTLAHIIANE--LGVNL----KITSGPALEKPGDLAAI 97 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHHhc-CCCcCeEEeeCCCCCcHHHHHHHHHHH--hcCCe----EecccccccChhhHHHH
Confidence 467999999999887777654331 456778999999999999999999984 33332 11111111111122222
Q ss_pred HHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCC--------CCCcE-----------E
Q 003037 176 IEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNG--------LRGSK-----------I 236 (854)
Q Consensus 176 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~--------~~gs~-----------i 236 (854)
+..+ ...=++++|.++.-....-+-+...+..+ ++++| |
T Consensus 98 Lt~L----------------------e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLI 155 (332)
T COG2255 98 LTNL----------------------EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLI 155 (332)
T ss_pred HhcC----------------------CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEe
Confidence 2222 22335667777654433223333333221 23343 2
Q ss_pred EEecccHHHHhhccC--cceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHH
Q 003037 237 LVTTRKMTVAQMMQS--NDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTI 306 (854)
Q Consensus 237 lvTtR~~~v~~~~~~--~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~ 306 (854)
=-|||.-.+...+.. .-+.+++.-+.+|-.+...+.+..- .-+..++.+.+|+++..|-|--..-+
T Consensus 156 GATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l----~i~i~~~~a~eIA~rSRGTPRIAnRL 223 (332)
T COG2255 156 GATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKIL----GIEIDEEAALEIARRSRGTPRIANRL 223 (332)
T ss_pred eeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHh----CCCCChHHHHHHHHhccCCcHHHHHH
Confidence 358886555444332 3477889999999999998877321 12223466788999999999644433
No 119
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=9.6e-05 Score=85.12 Aligned_cols=197 Identities=16% Similarity=0.180 Sum_probs=113.0
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAI 175 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 175 (854)
-..++|.++.+..|..++.... -...+.++|+.|+||||+|+.+++..--. ..+.... .....-...+.+
T Consensus 15 f~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~~~~~~~----~~Cg~C~~C~~i 84 (620)
T PRK14948 15 FDELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCL-NSDKPTP----EPCGKCELCRAI 84 (620)
T ss_pred HhhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCC-CcCCCCC----CCCcccHHHHHH
Confidence 4678999999999999987432 23567899999999999999998742110 1100000 001111111111
Q ss_pred HHHhcC-----CCCCCccHHHHHHHHHHH----hcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccH-HH
Q 003037 176 IEALEG-----STPSLGELNSLLERIYAS----IARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKM-TV 245 (854)
Q Consensus 176 ~~~l~~-----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v 245 (854)
...... .......++.+.+.+... ..+++-++|+|++..-....+..|+..+........+|++|.+. .+
T Consensus 85 ~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~l 164 (620)
T PRK14948 85 AAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRV 164 (620)
T ss_pred hcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhh
Confidence 111100 000112222322222111 12556689999997666677888888887765566666555433 33
Q ss_pred Hh-hccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHH
Q 003037 246 AQ-MMQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTI 306 (854)
Q Consensus 246 ~~-~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~ 306 (854)
.. .......+++..++.++....+...+...+.... .+.+..|++.++|.+..+...
T Consensus 165 lpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is----~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 165 LPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE----PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred hHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 22 2233567888999999988887765532221111 245677889999988655443
No 120
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.16 E-value=3.8e-05 Score=85.38 Aligned_cols=169 Identities=17% Similarity=0.108 Sum_probs=102.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCC
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIARK 203 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 203 (854)
..-+.|+|..|+|||+|++++++.......-..+++++ ..++...+...+.... .....+.+.++ .
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~~-~ 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEIC-Q 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHhc-c
Confidence 34588999999999999999988421111112334443 3456666666654311 11223334333 3
Q ss_pred eEEEEEecCCCcC--hhhHHHHHHhhcC-CCCCcEEEEecccH---------HHHhhccCcceEecCCCCHHHHHHHHHH
Q 003037 204 KFLLVLDDVWTED--YNKWETFQRCLKN-GLRGSKILVTTRKM---------TVAQMMQSNDVILIRELSEQACWSLFEQ 271 (854)
Q Consensus 204 ~~LlVlDdv~~~~--~~~~~~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~l~~~ 271 (854)
.-+||+||+.... ....+.+...+.. ...|..||+|+... .+...+...-.+.+++++.++-.+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 4488999995432 1222334443332 12345688887643 2233344566889999999999999998
Q ss_pred HhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHHHh
Q 003037 272 LAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTIGS 308 (854)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~ 308 (854)
.+...+. ....-+++..-|++.++|.|-.+..+..
T Consensus 287 ~~~~~gl--~~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 287 EIKNQNI--KQEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHhcCC--CCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 8743221 0123356778899999999987766543
No 121
>CHL00181 cbbX CbbX; Provisional
Probab=98.14 E-value=0.00015 Score=75.73 Aligned_cols=135 Identities=13% Similarity=0.101 Sum_probs=75.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCe
Q 003037 125 QVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIARKK 204 (854)
Q Consensus 125 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 204 (854)
..+.++|.+|+||||+|+.+++.....+.-....|+.++. .. +.....+.. .......+.+ . ..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~----l~~~~~g~~-----~~~~~~~l~~-a--~g 123 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DD----LVGQYIGHT-----APKTKEVLKK-A--MG 123 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HH----HHHHHhccc-----hHHHHHHHHH-c--cC
Confidence 4578999999999999999987421111112222555552 11 222221111 0111122222 2 23
Q ss_pred EEEEEecCCCc---------ChhhHHHHHHhhcCCCCCcEEEEecccHHHHhhc--------cCcceEecCCCCHHHHHH
Q 003037 205 FLLVLDDVWTE---------DYNKWETFQRCLKNGLRGSKILVTTRKMTVAQMM--------QSNDVILIRELSEQACWS 267 (854)
Q Consensus 205 ~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~--------~~~~~~~l~~L~~~e~~~ 267 (854)
-+|+||++..- ..+..+.+...+.....+.+||.++......... .-...+.+++++.+|..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 49999998531 1223344555565555566777777544332211 113478999999999999
Q ss_pred HHHHHhcC
Q 003037 268 LFEQLAFF 275 (854)
Q Consensus 268 l~~~~~~~ 275 (854)
++...+..
T Consensus 204 I~~~~l~~ 211 (287)
T CHL00181 204 IAKIMLEE 211 (287)
T ss_pred HHHHHHHH
Confidence 98887643
No 122
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.13 E-value=3.3e-05 Score=77.25 Aligned_cols=187 Identities=14% Similarity=0.139 Sum_probs=116.9
Q ss_pred ccccCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEE-EEeCCccCHHH
Q 003037 92 SLIDVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIW-VCVSDPFDEFR 170 (854)
Q Consensus 92 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~w-v~~s~~~~~~~ 170 (854)
.|..-.+++|.+..+..|...+.. + ...+...+|++|.|||+-|..+++..--.+-|.+++- .++|......
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~-~-----~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis- 103 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLR-R-----ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS- 103 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhh-c-----CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-
Confidence 344457899999999999999985 2 5778899999999999999888874222345655542 3444332211
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHh--cCCe-EEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEeccc-HHHH
Q 003037 171 IAKAIIEALEGSTPSLGELNSLLERIYASI--ARKK-FLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRK-MTVA 246 (854)
Q Consensus 171 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~ 246 (854)
+... ...+.+.+.....+.. ..++ -++|||++.....+.|..++..+......+|.|..+-. ..+.
T Consensus 104 vvr~----------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii 173 (346)
T KOG0989|consen 104 VVRE----------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRII 173 (346)
T ss_pred chhh----------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCC
Confidence 0000 0111111111000000 0123 48899999887789999999999987777776554443 2222
Q ss_pred hhc-cCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCC
Q 003037 247 QMM-QSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGL 299 (854)
Q Consensus 247 ~~~-~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~Gl 299 (854)
..+ ....-+.-++|..++...-+...+-..+...+ .+..+.|++.++|-
T Consensus 174 ~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d----~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 174 RPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDID----DDALKLIAKISDGD 223 (346)
T ss_pred hHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCc
Confidence 222 22457888999999998888877653333222 34556688888874
No 123
>PLN03150 hypothetical protein; Provisional
Probab=98.13 E-value=3.2e-06 Score=98.56 Aligned_cols=93 Identities=18% Similarity=0.330 Sum_probs=78.6
Q ss_pred CceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccccCCCceeeecCCCCc-ccchhhhc
Q 003037 482 KLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIE-ELPETCCE 560 (854)
Q Consensus 482 ~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~-~lP~~i~~ 560 (854)
.++.|.+.++. +.+.+|..+.++++|+.|+|++|.. ...+|..++.+.+|++|+|++|.+. .+|+++++
T Consensus 419 ~v~~L~L~~n~---L~g~ip~~i~~L~~L~~L~Ls~N~l-------~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~ 488 (623)
T PLN03150 419 FIDGLGLDNQG---LRGFIPNDISKLRHLQSINLSGNSI-------RGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ 488 (623)
T ss_pred EEEEEECCCCC---ccccCCHHHhCCCCCCEEECCCCcc-------cCcCChHHhCCCCCCEEECCCCCCCCCCchHHhc
Confidence 47778888777 6666788899999999999999982 3478989999999999999999987 78999999
Q ss_pred CCCCcEEeecCccccccccccccc
Q 003037 561 LFNVQTLEVLDCRSFRRLPQGFGK 584 (854)
Q Consensus 561 L~~L~~L~l~~~~~l~~lp~~i~~ 584 (854)
|++|++|++++|.....+|..++.
T Consensus 489 L~~L~~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 489 LTSLRILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred CCCCCEEECcCCcccccCChHHhh
Confidence 999999999999866688887764
No 124
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.12 E-value=0.00014 Score=82.91 Aligned_cols=194 Identities=15% Similarity=0.115 Sum_probs=113.7
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAI 175 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 175 (854)
-.++||-+..++.|..++.... -...+.++|+.|+||||+|+.+++..--...... ..+....+- +.|
T Consensus 15 f~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C----~~i 82 (563)
T PRK06647 15 FNSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSC----KSI 82 (563)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHH----HHH
Confidence 4679999999999999997432 3567889999999999999999874211100000 000000000 011
Q ss_pred HHHhc-----CCCCCCccHHHHH---HHHHH-HhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEeccc-HHH
Q 003037 176 IEALE-----GSTPSLGELNSLL---ERIYA-SIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRK-MTV 245 (854)
Q Consensus 176 ~~~l~-----~~~~~~~~~~~~~---~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v 245 (854)
...-. .........+++. +.+.. -..+++-++|+|++..-....+..+...+......+.+|.+|.. ..+
T Consensus 83 ~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL 162 (563)
T PRK06647 83 DNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKL 162 (563)
T ss_pred HcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHh
Confidence 00000 0000011222222 22121 12456678999999776666788888888776666777666543 333
Q ss_pred Hhh-ccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHH
Q 003037 246 AQM-MQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKT 305 (854)
Q Consensus 246 ~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ 305 (854)
... ......++..+++.++..+.+...+...+. ..-.+.+..|++.++|.+..+..
T Consensus 163 ~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi----~id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 163 PATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI----KYEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 322 233567899999999999888876643221 12245566788899998754433
No 125
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.08 E-value=4e-06 Score=65.00 Aligned_cols=60 Identities=25% Similarity=0.450 Sum_probs=52.5
Q ss_pred CCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccccc-ccccccCCCceeeecCCCC
Q 003037 481 KKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIP-KEIKKLIHLRFLKLVWLDI 551 (854)
Q Consensus 481 ~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP-~~i~~L~~L~~L~L~~~~i 551 (854)
++|++|.+.+|. +..+.+..|.++++|++|++++|. +..+| ..+.++++|++|++++|.|
T Consensus 1 p~L~~L~l~~n~---l~~i~~~~f~~l~~L~~L~l~~N~--------l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNK---LTEIPPDSFSNLPNLETLDLSNNN--------LTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSST---ESEECTTTTTTGTTESEEEETSSS--------ESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCC---CCccCHHHHcCCCCCCEeEccCCc--------cCccCHHHHcCCCCCCEEeCcCCcC
Confidence 478999999997 666666789999999999999999 88886 4779999999999999975
No 126
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.07 E-value=0.00012 Score=76.55 Aligned_cols=133 Identities=16% Similarity=0.121 Sum_probs=74.3
Q ss_pred EEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCeE
Q 003037 126 VISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIARKKF 205 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~ 205 (854)
-+.++|++|+|||++|+.++......+......|+.++. .. +...+.+.. .......+.+ . ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~~-----~~~~~~~~~~-a--~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGHT-----APKTKEILKR-A--MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhcccc-----hHHHHHHHHH-c--cCc
Confidence 578999999999999987776321112222223554442 11 222222211 1112222222 2 235
Q ss_pred EEEEecCCCc---------ChhhHHHHHHhhcCCCCCcEEEEecccHHHHhhc--c------CcceEecCCCCHHHHHHH
Q 003037 206 LLVLDDVWTE---------DYNKWETFQRCLKNGLRGSKILVTTRKMTVAQMM--Q------SNDVILIRELSEQACWSL 268 (854)
Q Consensus 206 LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~--~------~~~~~~l~~L~~~e~~~l 268 (854)
+|+||++..- ....++.+...+.....+.+||+++......... . -...+.+++++.+|..++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8999998521 1233455666666655566777776543222111 1 135789999999999999
Q ss_pred HHHHhc
Q 003037 269 FEQLAF 274 (854)
Q Consensus 269 ~~~~~~ 274 (854)
+...+-
T Consensus 204 ~~~~l~ 209 (284)
T TIGR02880 204 AGLMLK 209 (284)
T ss_pred HHHHHH
Confidence 988763
No 127
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.07 E-value=0.00012 Score=75.87 Aligned_cols=161 Identities=15% Similarity=0.133 Sum_probs=83.0
Q ss_pred ccccchhHHHHHHHHhccc-------cc--ccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCH
Q 003037 98 EVRGRDEEKNTLKSKLLCE-------SS--EQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDE 168 (854)
Q Consensus 98 ~~vGr~~~~~~l~~~L~~~-------~~--~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 168 (854)
.++|.++.+++|.+..... .. ...+....+.++|++|+||||+|+.+++.....+.-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~--- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA--- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH---
Confidence 4789887777665432111 00 00234566889999999999999999873211111111223333221
Q ss_pred HHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcC--------hhhHHHHHHhhcCCCCCcEEEEec
Q 003037 169 FRIAKAIIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTED--------YNKWETFQRCLKNGLRGSKILVTT 240 (854)
Q Consensus 169 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~ilvTt 240 (854)
.+. ...-++ ........+.+. ..-+|++|++..-. .+..+.+...+........+++++
T Consensus 84 -~l~----~~~~g~-----~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 84 -DLV----GEYIGH-----TAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred -Hhh----hhhccc-----hHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 111 111000 111122222221 23489999995411 123444555555544444556665
Q ss_pred ccHHHHh------hc-cC-cceEecCCCCHHHHHHHHHHHhc
Q 003037 241 RKMTVAQ------MM-QS-NDVILIRELSEQACWSLFEQLAF 274 (854)
Q Consensus 241 R~~~v~~------~~-~~-~~~~~l~~L~~~e~~~l~~~~~~ 274 (854)
...+... .+ .. ...+.+++++.++..+++.+.+.
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 4432211 11 11 24688999999999999987764
No 128
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.07 E-value=0.00029 Score=72.82 Aligned_cols=168 Identities=14% Similarity=0.169 Sum_probs=106.4
Q ss_pred cCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHH
Q 003037 95 DVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKA 174 (854)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 174 (854)
-.+.+.+|+.++..+...+..... .-+..|.|+|..|.|||.+.+++.+.. . ...+|+++-+.++..-++..
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~--n---~~~vw~n~~ecft~~~lle~ 75 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKL--N---LENVWLNCVECFTYAILLEK 75 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhc--C---CcceeeehHHhccHHHHHHH
Confidence 357899999999999999876542 246677999999999999999999853 1 24689999999999999999
Q ss_pred HHHHhc-CCCCCC------ccHHHHHHHHHH--Hhc--CCeEEEEEecCCCcChhhHHH-----HHHhhcCCCCCcEEEE
Q 003037 175 IIEALE-GSTPSL------GELNSLLERIYA--SIA--RKKFLLVLDDVWTEDYNKWET-----FQRCLKNGLRGSKILV 238 (854)
Q Consensus 175 i~~~l~-~~~~~~------~~~~~~~~~l~~--~l~--~k~~LlVlDdv~~~~~~~~~~-----l~~~l~~~~~gs~ilv 238 (854)
|+.... .+.... ....+....+.+ ... ++.++||||++.. ..+.+. +.+...-.....-+|+
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~--lrD~~a~ll~~l~~L~el~~~~~i~ii 153 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADA--LRDMDAILLQCLFRLYELLNEPTIVII 153 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHh--hhccchHHHHHHHHHHHHhCCCceEEE
Confidence 999985 222111 112222333333 122 4689999999943 222222 2221111122233444
Q ss_pred ecccHHHHhh---ccC--cceEecCCCCHHHHHHHHHHH
Q 003037 239 TTRKMTVAQM---MQS--NDVILIRELSEQACWSLFEQL 272 (854)
Q Consensus 239 TtR~~~v~~~---~~~--~~~~~l~~L~~~e~~~l~~~~ 272 (854)
++-....... +++ ..++..+.-+.+|..+++.+.
T Consensus 154 ls~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 154 LSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred EeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 4432221111 233 235667888999999998763
No 129
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.06 E-value=4.6e-05 Score=91.32 Aligned_cols=154 Identities=19% Similarity=0.242 Sum_probs=85.9
Q ss_pred CccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccc---cccc-cCeeEE-EEeCCccCHHHH
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNND---VINH-FEKRIW-VCVSDPFDEFRI 171 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~-f~~~~w-v~~s~~~~~~~~ 171 (854)
..+|||++++.+++..|.... ..-+.++|.+|+||||+|+.+++... +... ....+| +.++.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~------- 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL------- 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh-------
Confidence 468999999999999987533 33456999999999999999988411 0111 122232 22221
Q ss_pred HHHHHHHhcCCCCCCccHHHHHHHHHHHh--cCCeEEEEEecCCCcC-------hhhHHH-HHHhhcCCCCCcEEEEecc
Q 003037 172 AKAIIEALEGSTPSLGELNSLLERIYASI--ARKKFLLVLDDVWTED-------YNKWET-FQRCLKNGLRGSKILVTTR 241 (854)
Q Consensus 172 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~-------~~~~~~-l~~~l~~~~~gs~ilvTtR 241 (854)
+........+.+.....+.+.+ .+++.+|++|+++.-. ..+... +...+..+ .-++|-||.
T Consensus 254 -------l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G--~l~~IgaTT 324 (852)
T TIGR03345 254 -------LQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG--ELRTIAATT 324 (852)
T ss_pred -------hhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC--CeEEEEecC
Confidence 0000011112222222222222 2468999999985421 111112 33333222 245666665
Q ss_pred cHHHHhh-------ccCcceEecCCCCHHHHHHHHHHH
Q 003037 242 KMTVAQM-------MQSNDVILIRELSEQACWSLFEQL 272 (854)
Q Consensus 242 ~~~v~~~-------~~~~~~~~l~~L~~~e~~~l~~~~ 272 (854)
..+.... ......+.+++++.+++.+++...
T Consensus 325 ~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 325 WAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred HHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 5432111 123468999999999999997543
No 130
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=0.00015 Score=83.37 Aligned_cols=196 Identities=15% Similarity=0.179 Sum_probs=111.3
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAI 175 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 175 (854)
-.++||.+..++.|...+.... -...+.++|+.|+||||+|+.+++..--....+. ..+..-..-..|
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i 82 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEI 82 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHH
Confidence 4689999999999999886432 3456789999999999999888774110000000 000000000000
Q ss_pred HHH-------hcCC-CCCCccHHHHHHHHHHH-hcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEec-ccHHH
Q 003037 176 IEA-------LEGS-TPSLGELNSLLERIYAS-IARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTT-RKMTV 245 (854)
Q Consensus 176 ~~~-------l~~~-~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~v 245 (854)
... +.+. .....+++++.+.+... ..+++-++|+|+++.-.......|...+......+.+|++| ....+
T Consensus 83 ~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl 162 (576)
T PRK14965 83 TEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKV 162 (576)
T ss_pred hcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhh
Confidence 000 0000 00111222222222111 13456689999997666667788888887766666666555 43444
Q ss_pred Hhh-ccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCc-HHHHHHH
Q 003037 246 AQM-MQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLP-LAAKTIG 307 (854)
Q Consensus 246 ~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlP-Lai~~~~ 307 (854)
... .+....+++++++.++....+...+...+.. ...+.+..|++.++|.. .|+..+-
T Consensus 163 ~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~----i~~~al~~la~~a~G~lr~al~~Ld 222 (576)
T PRK14965 163 PITILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS----ISDAALALVARKGDGSMRDSLSTLD 222 (576)
T ss_pred hHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC----CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 432 3345688899999999988887655322211 12345667888899866 4444443
No 131
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=0.00023 Score=81.44 Aligned_cols=193 Identities=16% Similarity=0.167 Sum_probs=109.9
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAI 175 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 175 (854)
-.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+.+..--...-+ ....+.-..-+.|
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i 82 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAI 82 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHH
Confidence 4689999999999999987533 356677899999999999988876311000000 0000000011111
Q ss_pred HHHhcC-----CCCCCccHH---HHHHHHHH-HhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecc-cHHH
Q 003037 176 IEALEG-----STPSLGELN---SLLERIYA-SIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTR-KMTV 245 (854)
Q Consensus 176 ~~~l~~-----~~~~~~~~~---~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR-~~~v 245 (854)
...... +.......+ ++...+.. -..+++-++|+|++..-....+..|...+........+|++|. ...+
T Consensus 83 ~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki 162 (559)
T PRK05563 83 TNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKI 162 (559)
T ss_pred hcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhC
Confidence 100000 000011122 22222211 1245677899999976666678888887776555556565553 3333
Q ss_pred Hh-hccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHH
Q 003037 246 AQ-MMQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAK 304 (854)
Q Consensus 246 ~~-~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~ 304 (854)
.. ..+....++..+++.++....+...+...+.... .+.+..|++.++|.+..+.
T Consensus 163 ~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~----~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 163 PATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE----DEALRLIARAAEGGMRDAL 218 (559)
T ss_pred cHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 22 2233567889999999998888776642221111 3456678888888775443
No 132
>PRK06620 hypothetical protein; Validated
Probab=98.05 E-value=9.3e-05 Score=73.66 Aligned_cols=137 Identities=12% Similarity=0.040 Sum_probs=79.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCe
Q 003037 125 QVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIARKK 204 (854)
Q Consensus 125 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 204 (854)
+.+.|+|++|+|||+|++.+++... . .++. ..+.. + +.. ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~~---------------------~-------~~~-~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFFN---------------------E-------EIL-EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhhc---------------------h-------hHH-hcC
Confidence 6789999999999999999887421 1 1211 00000 0 001 123
Q ss_pred EEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccHH-------HHhhccCcceEecCCCCHHHHHHHHHHHhcCCC
Q 003037 205 FLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKMT-------VAQMMQSNDVILIRELSEQACWSLFEQLAFFGR 277 (854)
Q Consensus 205 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-------v~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~ 277 (854)
-++++||++.-.....-.+...+. ..|..||+|++... ....+...-.+++++++.++-..++.+.+...+
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 478899995321111222222222 24668999987432 223344456899999999998888887764221
Q ss_pred CCCCchHHHHHHHHHHhhcCCCcHHHHH
Q 003037 278 PRSECEQLIEIGRKIVGKCKGLPLAAKT 305 (854)
Q Consensus 278 ~~~~~~~~~~~~~~I~~~~~GlPLai~~ 305 (854)
- .--+++..-|++++.|.--.+.-
T Consensus 165 l----~l~~ev~~~L~~~~~~d~r~l~~ 188 (214)
T PRK06620 165 V----TISRQIIDFLLVNLPREYSKIIE 188 (214)
T ss_pred C----CCCHHHHHHHHHHccCCHHHHHH
Confidence 1 12245666677777776544433
No 133
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.04 E-value=6.1e-07 Score=90.81 Aligned_cols=148 Identities=17% Similarity=0.164 Sum_probs=79.0
Q ss_pred cCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCC---CchhhcccCccEEEEecccCCCC--
Q 003037 637 EKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGW---PSWIVSLNKLKKLVLYQFYLCDT-- 711 (854)
Q Consensus 637 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l---p~~~~~l~~L~~L~L~~~~~~~~-- 711 (854)
.+.+.|+.+....|. ..+.....+-..+..++.|+.+.+.++....... -..+..+++|+.|+|.+|.+...
T Consensus 154 ~~~~~Lrv~i~~rNr---len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs 230 (382)
T KOG1909|consen 154 ASKPKLRVFICGRNR---LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS 230 (382)
T ss_pred CCCcceEEEEeeccc---cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHH
Confidence 445667777776652 1112233444555666788888884332222111 11234688888888888866431
Q ss_pred --CC-CCCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCCCccceeeccccccccccccCCCccccCC
Q 003037 712 --MP-PLGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLKQVLFYNICHWEEWDFGKGDSITIM 788 (854)
Q Consensus 712 --l~-~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l 788 (854)
+. .+..+|+|+.|++++|. ++.=+..-+... -...+|+|+.|.+.++.--.+-.......+...
T Consensus 231 ~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~a------------l~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek 297 (382)
T KOG1909|consen 231 VALAKALSSWPHLRELNLGDCL-LENEGAIAFVDA------------LKESAPSLEVLELAGNEITRDAALALAACMAEK 297 (382)
T ss_pred HHHHHHhcccchheeecccccc-cccccHHHHHHH------------HhccCCCCceeccCcchhHHHHHHHHHHHHhcc
Confidence 11 25667888888888886 333222111000 012478888888776321100000000022357
Q ss_pred Cccceeeecccc
Q 003037 789 PQLKKLEFERCT 800 (854)
Q Consensus 789 ~~L~~L~l~~c~ 800 (854)
|.|++|+|++|.
T Consensus 298 ~dL~kLnLngN~ 309 (382)
T KOG1909|consen 298 PDLEKLNLNGNR 309 (382)
T ss_pred hhhHHhcCCccc
Confidence 888888888884
No 134
>PLN03150 hypothetical protein; Provisional
Probab=98.04 E-value=9.2e-06 Score=94.71 Aligned_cols=110 Identities=19% Similarity=0.224 Sum_probs=91.3
Q ss_pred ceEEEEeeeCCCC--CCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccc
Q 003037 460 KVRHSMLKLGYDS--FPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKK 537 (854)
Q Consensus 460 ~~r~l~l~~~~~~--~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~ 537 (854)
.++.+.+.++... .|..+..+++|+.|.+.+|. +.+.+|..+..+++|++|+|++|.. ...+|..+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~---l~g~iP~~~~~l~~L~~LdLs~N~l-------sg~iP~~l~~ 488 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNS---IRGNIPPSLGSITSLEVLDLSYNSF-------NGSIPESLGQ 488 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCc---ccCcCChHHhCCCCCCEEECCCCCC-------CCCCchHHhc
Confidence 3667777766653 67888999999999999998 6666888899999999999999983 3478999999
Q ss_pred cCCCceeeecCCCCc-ccchhhhcC-CCCcEEeecCcccccccc
Q 003037 538 LIHLRFLKLVWLDIE-ELPETCCEL-FNVQTLEVLDCRSFRRLP 579 (854)
Q Consensus 538 L~~L~~L~L~~~~i~-~lP~~i~~L-~~L~~L~l~~~~~l~~lp 579 (854)
|.+|++|+|++|.+. .+|..++.+ .++..+++.+|..+...|
T Consensus 489 L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 489 LTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999999999999987 899988764 577899999887544443
No 135
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.04 E-value=5.8e-05 Score=89.82 Aligned_cols=156 Identities=18% Similarity=0.227 Sum_probs=87.6
Q ss_pred CccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccc---ccccc-CeeEEEEeCCccCHHHHH
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNND---VINHF-EKRIWVCVSDPFDEFRIA 172 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~f-~~~~wv~~s~~~~~~~~~ 172 (854)
+.++||++++++++..|.... ..-+.++|++|+|||++|+.+++... +...+ ...+|. ++ ...+
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~~----~~~l- 249 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-LD----MGSL- 249 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-ec----HHHH-
Confidence 468999999999999887432 33457999999999999999988421 11111 233332 11 1111
Q ss_pred HHHHHHhcCCCCCCccHHHHHHHHHHHh-cCCeEEEEEecCCCc---------ChhhHHHHHHhhcCCCCCcEEEEeccc
Q 003037 173 KAIIEALEGSTPSLGELNSLLERIYASI-ARKKFLLVLDDVWTE---------DYNKWETFQRCLKNGLRGSKILVTTRK 242 (854)
Q Consensus 173 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvTtR~ 242 (854)
.. .. ....+.+.....+.+.+ +.++.+|++|+++.- +.+.-+.+...+..+ .-++|-+|..
T Consensus 250 ---~a---~~-~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g--~i~~IgaTt~ 320 (731)
T TIGR02639 250 ---LA---GT-KYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG--KLRCIGSTTY 320 (731)
T ss_pred ---hh---hc-cccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC--CeEEEEecCH
Confidence 10 00 01123333333444433 345889999998531 011222344433322 2345555443
Q ss_pred HHHHh------h-ccCcceEecCCCCHHHHHHHHHHHh
Q 003037 243 MTVAQ------M-MQSNDVILIRELSEQACWSLFEQLA 273 (854)
Q Consensus 243 ~~v~~------~-~~~~~~~~l~~L~~~e~~~l~~~~~ 273 (854)
.+... . ......+.+++++.++..+++....
T Consensus 321 ~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 321 EEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 22211 1 1224589999999999999998644
No 136
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=1.1e-06 Score=91.46 Aligned_cols=107 Identities=14% Similarity=0.063 Sum_probs=70.6
Q ss_pred cCceEEEEeeeCCCCCCc---ccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccccc--
Q 003037 458 VEKVRHSMLKLGYDSFPD---SIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIP-- 532 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~~~~---~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP-- 532 (854)
.+++|.+++.+.....+. ....++++|.|+++.|-...+.. +-.....|++|+.|+|+.|. +...-
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~-v~~i~eqLp~Le~LNls~Nr--------l~~~~~s 190 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFP-VLKIAEQLPSLENLNLSSNR--------LSNFISS 190 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHH-HHHHHHhcccchhccccccc--------ccCCccc
Confidence 566777777777666444 46678888999888876322222 33456788889999988887 22211
Q ss_pred ccccccCCCceeeecCCCCc--ccchhhhcCCCCcEEeecCcc
Q 003037 533 KEIKKLIHLRFLKLVWLDIE--ELPETCCELFNVQTLEVLDCR 573 (854)
Q Consensus 533 ~~i~~L~~L~~L~L~~~~i~--~lP~~i~~L~~L~~L~l~~~~ 573 (854)
..-..+.||+.|.|+.|+++ .+-.-...+++|+.|++..|.
T Consensus 191 ~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 191 NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE 233 (505)
T ss_pred cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc
Confidence 11236778888888888876 233334456788888888774
No 137
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.00 E-value=0.00027 Score=74.60 Aligned_cols=196 Identities=13% Similarity=0.113 Sum_probs=116.6
Q ss_pred CccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhcccc-------------ccccCeeEEEEeC
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDV-------------INHFEKRIWVCVS 163 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-------------~~~f~~~~wv~~s 163 (854)
.+++|.++.++.+...+...+ -.....++|+.|+||+++|..+++..-- ....+...|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 468999999999999997432 2578999999999999999777663100 1122334454321
Q ss_pred CccCHHHHHHHHHHHhc--CCCCCCccHHHHHHHHHHHh-----cCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEE
Q 003037 164 DPFDEFRIAKAIIEALE--GSTPSLGELNSLLERIYASI-----ARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKI 236 (854)
Q Consensus 164 ~~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 236 (854)
...+-..+-...++..+ ........++++ +.+.+.+ .+.+-++|+|++...+......++..+...+ .+.+
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 00000001111112222 111112223332 2233333 3567799999997766677888888887665 4555
Q ss_pred EEecccH-HHHh-hccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHH
Q 003037 237 LVTTRKM-TVAQ-MMQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTI 306 (854)
Q Consensus 237 lvTtR~~-~v~~-~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~ 306 (854)
|++|.+. .+.. ..+....+++.+++.++..+.+.+..... ... .....++..++|.|..+..+
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~---~~~----~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE---ILN----INFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc---cch----hHHHHHHHHcCCCHHHHHHH
Confidence 5555443 3332 33446799999999999999998764211 101 11346788999999766543
No 138
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.99 E-value=7.8e-06 Score=57.95 Aligned_cols=34 Identities=29% Similarity=0.342 Sum_probs=17.0
Q ss_pred CCceeeecCCCCcccchhhhcCCCCcEEeecCcc
Q 003037 540 HLRFLKLVWLDIEELPETCCELFNVQTLEVLDCR 573 (854)
Q Consensus 540 ~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~ 573 (854)
+|++|++++|.|+.+|+.+++|++|++|++++|.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 4555555555555555545555555555555554
No 139
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.99 E-value=2.7e-05 Score=82.61 Aligned_cols=90 Identities=20% Similarity=0.120 Sum_probs=61.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCc--cCHHHHHHHHHHHhcCCCCCCccHH------HHHH
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDP--FDEFRIAKAIIEALEGSTPSLGELN------SLLE 194 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~ 194 (854)
.-..++|+|++|+|||||++.+++... .++|+..+||.+.+. .++.++++.+...+-....+..... .+.+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 456789999999999999999999633 337999999999866 7888899888654433322211111 1111
Q ss_pred HHHHH-hcCCeEEEEEecCC
Q 003037 195 RIYAS-IARKKFLLVLDDVW 213 (854)
Q Consensus 195 ~l~~~-l~~k~~LlVlDdv~ 213 (854)
..... -.+++++|++|++.
T Consensus 246 ~Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHHcCCCeEEEEEChh
Confidence 22221 35899999999994
No 140
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.98 E-value=7.8e-06 Score=57.96 Aligned_cols=41 Identities=24% Similarity=0.391 Sum_probs=35.1
Q ss_pred CcccEEEecCCCCccccccccccccccccccCCCceeeecCCCCcccch
Q 003037 508 TCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIEELPE 556 (854)
Q Consensus 508 ~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~~lP~ 556 (854)
++|++|++++|. +.++|..+++|++|++|++++|.|+.+|.
T Consensus 1 ~~L~~L~l~~N~--------i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQ--------ITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS---------SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCC--------CcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 478999999999 99999889999999999999999987764
No 141
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.97 E-value=0.0001 Score=80.80 Aligned_cols=157 Identities=15% Similarity=0.223 Sum_probs=88.8
Q ss_pred CccccchhHHHHHHHHhcccccc-------cCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHH
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSE-------QQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEF 169 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 169 (854)
+.+.|+++++++|.+.+..+-.. +...++-|.|+|++|+|||++|+++++. .... |+.++. .
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~----~ 199 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG----S 199 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh----H
Confidence 35779999999998876421110 0134567899999999999999999984 3222 333321 1
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHHh-cCCeEEEEEecCCCc-----------ChhhHHHHHHhhcC-----CCC
Q 003037 170 RIAKAIIEALEGSTPSLGELNSLLERIYASI-ARKKFLLVLDDVWTE-----------DYNKWETFQRCLKN-----GLR 232 (854)
Q Consensus 170 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~-----------~~~~~~~l~~~l~~-----~~~ 232 (854)
.+ .....+ ........+.+.. ...+.+|+|||+..- +......+...+.. ...
T Consensus 200 ~l----~~~~~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~ 269 (389)
T PRK03992 200 EL----VQKFIG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRG 269 (389)
T ss_pred HH----hHhhcc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCC
Confidence 11 111100 1112222222222 345789999998431 11122233333321 123
Q ss_pred CcEEEEecccHHHHhh-c-c---CcceEecCCCCHHHHHHHHHHHhc
Q 003037 233 GSKILVTTRKMTVAQM-M-Q---SNDVILIRELSEQACWSLFEQLAF 274 (854)
Q Consensus 233 gs~ilvTtR~~~v~~~-~-~---~~~~~~l~~L~~~e~~~l~~~~~~ 274 (854)
+.+||.||........ + . -...+.+++.+.++-.++|..+..
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~ 316 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTR 316 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhc
Confidence 5567777765432221 1 1 135789999999999999988764
No 142
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.97 E-value=0.00016 Score=71.32 Aligned_cols=126 Identities=22% Similarity=0.278 Sum_probs=73.8
Q ss_pred ccccCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHH
Q 003037 92 SLIDVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRI 171 (854)
Q Consensus 92 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~ 171 (854)
.++..+.++|.|.+++.|++--..--. .....-+.+||..|+|||++++++.+...-.+ .--|.+..
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k------- 88 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQFLQ--GLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSK------- 88 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHc--CCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECH-------
Confidence 345567899999999988764332111 23455678899999999999999988421111 11223322
Q ss_pred HHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCC-cChhhHHHHHHhhcCC----CCCcEEEEecccHH
Q 003037 172 AKAIIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWT-EDYNKWETFQRCLKNG----LRGSKILVTTRKMT 244 (854)
Q Consensus 172 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~----~~gs~ilvTtR~~~ 244 (854)
.+..++..+.+.++. +..||+|++||+.- .....+..+...+.-+ +....|..||-.+.
T Consensus 89 ------------~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 89 ------------EDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred ------------HHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhh
Confidence 122233344444432 35799999999843 2335666777766532 23334445554333
No 143
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.96 E-value=0.00039 Score=77.21 Aligned_cols=159 Identities=16% Similarity=0.161 Sum_probs=92.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhcccccccc--CeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhc
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNNNDVINHF--EKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIA 201 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 201 (854)
...+.|+|..|+|||+||+++++. ..... ..+++++. ..+...+...+... ..+. +.+.++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~----~~~~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVSS------EKFTNDFVNALRNN-----KMEE----FKEKYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CHHH----HHHHHH
Confidence 356889999999999999999985 33322 24456543 33444455544321 2222 223333
Q ss_pred CCeEEEEEecCCCcChh-h-HHHHHHhhcC-CCCCcEEEEecccH-H--------HHhhccCcceEecCCCCHHHHHHHH
Q 003037 202 RKKFLLVLDDVWTEDYN-K-WETFQRCLKN-GLRGSKILVTTRKM-T--------VAQMMQSNDVILIRELSEQACWSLF 269 (854)
Q Consensus 202 ~k~~LlVlDdv~~~~~~-~-~~~l~~~l~~-~~~gs~ilvTtR~~-~--------v~~~~~~~~~~~l~~L~~~e~~~l~ 269 (854)
+ .-+|||||+...... . .+.+...+.. ...+..+|+|+... . +...+.....+.+++.+.++-..++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 2 348999999542111 1 1233333322 12345688887642 1 1222333457899999999999999
Q ss_pred HHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHH
Q 003037 270 EQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAK 304 (854)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~ 304 (854)
.+.+.......+ +++...|++.+.|..-.+.
T Consensus 278 ~~~~~~~~~~l~----~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 278 QKKAEEEGLELP----DEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHcCCCCC----HHHHHHHHHhcCCCHHHHH
Confidence 988754322122 4566667788888766443
No 144
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.95 E-value=8.7e-05 Score=89.44 Aligned_cols=154 Identities=21% Similarity=0.229 Sum_probs=86.8
Q ss_pred CccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccc---ccccc-CeeEEEEeCCccCHHHHH
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNND---VINHF-EKRIWVCVSDPFDEFRIA 172 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~f-~~~~wv~~s~~~~~~~~~ 172 (854)
..++||+++++++++.|.... ..-+.++|++|+|||++|+.++.... +.... ...+|. + +..
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~--- 244 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIG--- 244 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHH---
Confidence 458999999999999997532 33456999999999999998887421 11111 234442 1 111
Q ss_pred HHHHHHhcCCCCCCccHHHHHHHHHHHh-cCCeEEEEEecCCCc-------ChhhHHH-HHHhhcCCCCCcEEEEecccH
Q 003037 173 KAIIEALEGSTPSLGELNSLLERIYASI-ARKKFLLVLDDVWTE-------DYNKWET-FQRCLKNGLRGSKILVTTRKM 243 (854)
Q Consensus 173 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~-------~~~~~~~-l~~~l~~~~~gs~ilvTtR~~ 243 (854)
..+.+.. ...+.+.....+.+.+ ..++.+|++|+++.- ....... +...+..+ .-++|.+|...
T Consensus 245 ----~l~ag~~-~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg--~l~~IgaTt~~ 317 (821)
T CHL00095 245 ----LLLAGTK-YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG--ELQCIGATTLD 317 (821)
T ss_pred ----HHhccCC-CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC--CcEEEEeCCHH
Confidence 1111111 1223344333343333 356899999998421 0011222 33333322 23556555554
Q ss_pred HHHhh-------ccCcceEecCCCCHHHHHHHHHH
Q 003037 244 TVAQM-------MQSNDVILIRELSEQACWSLFEQ 271 (854)
Q Consensus 244 ~v~~~-------~~~~~~~~l~~L~~~e~~~l~~~ 271 (854)
+.... .....++.+...+.++...++..
T Consensus 318 ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 318 EYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 43221 12245788999999998888754
No 145
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.93 E-value=0.00036 Score=74.15 Aligned_cols=97 Identities=10% Similarity=0.088 Sum_probs=68.9
Q ss_pred CCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccHH-HH-hhccCcceEecCCCCHHHHHHHHHHHhcCCCCC
Q 003037 202 RKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKMT-VA-QMMQSNDVILIRELSEQACWSLFEQLAFFGRPR 279 (854)
Q Consensus 202 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~-~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~ 279 (854)
+++-++|+|+++..+......+...+.....++.+|+||.+.. +. +..+....+.+.+++.+++.+.+......
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~---- 180 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE---- 180 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc----
Confidence 4445567899988777888888888887777788888877653 32 23344678999999999999999765310
Q ss_pred CCchHHHHHHHHHHhhcCCCcHHHHHH
Q 003037 280 SECEQLIEIGRKIVGKCKGLPLAAKTI 306 (854)
Q Consensus 280 ~~~~~~~~~~~~I~~~~~GlPLai~~~ 306 (854)
.. .+.+..++..++|.|+.+..+
T Consensus 181 ~~----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 SD----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred CC----hHHHHHHHHHcCCCHHHHHHH
Confidence 11 233456788999999866554
No 146
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.92 E-value=0.00029 Score=78.32 Aligned_cols=160 Identities=14% Similarity=0.135 Sum_probs=93.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhcccccccc-C-eeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhc
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNNNDVINHF-E-KRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIA 201 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 201 (854)
..-+.|+|.+|+|||+||+.+++. ..... . .++|++. .+++..+...+... ..+. +.+..+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~~----f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLNE----FREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHHH----HHHHHH
Confidence 345899999999999999999985 33322 2 4556653 34555555555321 1222 233333
Q ss_pred CCeEEEEEecCCCcC-hhhH-HHHHHhhcC-CCCCcEEEEecc-cHHH--------HhhccCcceEecCCCCHHHHHHHH
Q 003037 202 RKKFLLVLDDVWTED-YNKW-ETFQRCLKN-GLRGSKILVTTR-KMTV--------AQMMQSNDVILIRELSEQACWSLF 269 (854)
Q Consensus 202 ~k~~LlVlDdv~~~~-~~~~-~~l~~~l~~-~~~gs~ilvTtR-~~~v--------~~~~~~~~~~~l~~L~~~e~~~l~ 269 (854)
.+.-+|++||+.... ...+ +.+...+.. ...|..||+||. .+.- ...+.....+.+++.+.++-..++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 455689999995321 1111 223333221 113446888875 3221 122334558899999999999999
Q ss_pred HHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHH
Q 003037 270 EQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAK 304 (854)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~ 304 (854)
.+.+....... -.+++.-|++.+.|.--.+.
T Consensus 273 ~~~~~~~~~~l----~~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 273 RKMLEIEHGEL----PEEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHHhcCCCC----CHHHHHHHHhccccCHHHHH
Confidence 88875322212 24566778888877654443
No 147
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.90 E-value=0.0009 Score=65.78 Aligned_cols=183 Identities=16% Similarity=0.175 Sum_probs=109.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeC-CccCHHHHHHHHHHHhcCCCCC--CccHHHHHHHHHH
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVS-DPFDEFRIAKAIIEALEGSTPS--LGELNSLLERIYA 198 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~ 198 (854)
.+.+++.++|.-|.|||.+++..... ..+ +.++-|.+. ...+...+...++..+..+... ....+...+.+..
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s--~~~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~a 124 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLAS--LNE--DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAA 124 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHh--cCC--CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHH
Confidence 35679999999999999999944431 111 112223443 3456777888888888763221 1123344444444
Q ss_pred Hh-cCCe-EEEEEecCCCcChhhHHHHHHhhcCCCCCc---EEEEecccH-------HHHhhc-cCcce-EecCCCCHHH
Q 003037 199 SI-ARKK-FLLVLDDVWTEDYNKWETFQRCLKNGLRGS---KILVTTRKM-------TVAQMM-QSNDV-ILIRELSEQA 264 (854)
Q Consensus 199 ~l-~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs---~ilvTtR~~-------~v~~~~-~~~~~-~~l~~L~~~e 264 (854)
.. ++++ ..+++||++.......+.++-...-...++ +|+..-..+ .+.... ..... |++.|++.++
T Consensus 125 l~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~ 204 (269)
T COG3267 125 LVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAE 204 (269)
T ss_pred HHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHH
Confidence 44 4566 899999998766666666655443221122 233322111 111111 11234 9999999999
Q ss_pred HHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHHHhh
Q 003037 265 CWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTIGSL 309 (854)
Q Consensus 265 ~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~ 309 (854)
...++..+..+... .++---.+....|.++..|.|.+|..++..
T Consensus 205 t~~yl~~~Le~a~~-~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 205 TGLYLRHRLEGAGL-PEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHhccCC-CcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 99998877654432 222222345567889999999999887643
No 148
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.84 E-value=0.00037 Score=66.10 Aligned_cols=139 Identities=19% Similarity=0.158 Sum_probs=81.1
Q ss_pred cchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccc---cc---------------cccCeeEEEEe
Q 003037 101 GRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNND---VI---------------NHFEKRIWVCV 162 (854)
Q Consensus 101 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~---------------~~f~~~~wv~~ 162 (854)
|-++..+.|...+.... -...+.++|..|+||+++|..+++..- .. +......|+.-
T Consensus 1 gq~~~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 55677778887776432 345678999999999999988876311 00 12233444433
Q ss_pred CCc---cCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEe
Q 003037 163 SDP---FDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVT 239 (854)
Q Consensus 163 s~~---~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvT 239 (854)
... ..++++. .+...+.... ..++.-++|+||+.......+..++..+...+.++++|++
T Consensus 76 ~~~~~~i~i~~ir-~i~~~~~~~~----------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~ 138 (162)
T PF13177_consen 76 DKKKKSIKIDQIR-EIIEFLSLSP----------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILI 138 (162)
T ss_dssp TTSSSSBSHHHHH-HHHHHCTSS-----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEE
T ss_pred ccccchhhHHHHH-HHHHHHHHHH----------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEE
Confidence 222 2222221 3333332211 1245678999999877778899999999988889999998
Q ss_pred cccHH--HHhhccCcceEecCCCC
Q 003037 240 TRKMT--VAQMMQSNDVILIRELS 261 (854)
Q Consensus 240 tR~~~--v~~~~~~~~~~~l~~L~ 261 (854)
|++.. ..+..+-...+.+.+++
T Consensus 139 t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 139 TNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp ES-GGGS-HHHHTTSEEEEE----
T ss_pred ECChHHChHHHHhhceEEecCCCC
Confidence 88764 23333445566666654
No 149
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.84 E-value=0.001 Score=70.04 Aligned_cols=96 Identities=6% Similarity=0.054 Sum_probs=68.7
Q ss_pred CCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccH-HHH-hhccCcceEecCCCCHHHHHHHHHHHhcCCCCC
Q 003037 202 RKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKM-TVA-QMMQSNDVILIRELSEQACWSLFEQLAFFGRPR 279 (854)
Q Consensus 202 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~-~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~ 279 (854)
+++-++|+|++.......-..++..+.....++.+|++|.+. .+. +..+-...+.+.+++.+++.+.+....
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~------ 185 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG------ 185 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC------
Confidence 556799999997766667777888888777788777777654 333 333446789999999999998887531
Q ss_pred CCchHHHHHHHHHHhhcCCCcHHHHHHH
Q 003037 280 SECEQLIEIGRKIVGKCKGLPLAAKTIG 307 (854)
Q Consensus 280 ~~~~~~~~~~~~I~~~~~GlPLai~~~~ 307 (854)
.. ...+..++..++|.|+.+..+.
T Consensus 186 ~~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 186 VS----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred CC----hHHHHHHHHHcCCCHHHHHHHh
Confidence 11 1225667899999998765543
No 150
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.84 E-value=8e-05 Score=68.29 Aligned_cols=96 Identities=20% Similarity=0.075 Sum_probs=52.7
Q ss_pred EEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcC-CeE
Q 003037 127 ISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIAR-KKF 205 (854)
Q Consensus 127 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-k~~ 205 (854)
|.|+|++|+||||+|+.+++.. .. ..+.++.+...+. ........+...+.+.-.. ++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l--~~---~~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL--GF---PFIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT--TS---EEEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhc--cc---ccccccccccccc---------------cccccccccccccccccccccce
Confidence 5799999999999999999952 21 2344443321100 1111222233333332223 389
Q ss_pred EEEEecCCCcChhh-----------HHHHHHhhcCCCC---CcEEEEeccc
Q 003037 206 LLVLDDVWTEDYNK-----------WETFQRCLKNGLR---GSKILVTTRK 242 (854)
Q Consensus 206 LlVlDdv~~~~~~~-----------~~~l~~~l~~~~~---gs~ilvTtR~ 242 (854)
+|++||+..-.... ...+...+..... +..||.||..
T Consensus 61 vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 61 VLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp EEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred eeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 99999985422222 3445555554332 3566667765
No 151
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.83 E-value=0.00023 Score=86.04 Aligned_cols=154 Identities=19% Similarity=0.207 Sum_probs=84.3
Q ss_pred CccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccc------cCeeEEEEeCCccCHHH
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINH------FEKRIWVCVSDPFDEFR 170 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~------f~~~~wv~~s~~~~~~~ 170 (854)
..+|||++++++++..|.... ...+.++|.+|+|||++|+.++.. +... ....+|.. +...
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~--i~~~~~p~~l~~~~~~~l-----~~~~ 239 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQR--IVNGDVPESLKNKRLLAL-----DMGA 239 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHH--HhccCCchhhcCCeEEEe-----eHHH
Confidence 459999999999999997532 334568999999999999988874 2111 12223321 1111
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHhc--CCeEEEEEecCCCcC-----h--hhHHHHHHhhcCCCCCcEEEEecc
Q 003037 171 IAKAIIEALEGSTPSLGELNSLLERIYASIA--RKKFLLVLDDVWTED-----Y--NKWETFQRCLKNGLRGSKILVTTR 241 (854)
Q Consensus 171 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-----~--~~~~~l~~~l~~~~~gs~ilvTtR 241 (854)
+ + .+. ....+.+.....+.+.+. +++.+|++|+++.-. . .+...+..+....+ .-++|-+|.
T Consensus 240 l----~---a~~-~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g-~i~~IgaTt 310 (852)
T TIGR03346 240 L----I---AGA-KYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-ELHCIGATT 310 (852)
T ss_pred H----h---hcc-hhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC-ceEEEEeCc
Confidence 1 1 010 011233333333333332 468999999995311 0 11112222222211 234555555
Q ss_pred cHHHHh-------hccCcceEecCCCCHHHHHHHHHHH
Q 003037 242 KMTVAQ-------MMQSNDVILIRELSEQACWSLFEQL 272 (854)
Q Consensus 242 ~~~v~~-------~~~~~~~~~l~~L~~~e~~~l~~~~ 272 (854)
..+... .......+.+...+.++...++...
T Consensus 311 ~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 311 LDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred HHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 443311 1122457889999999999988654
No 152
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.82 E-value=0.0003 Score=77.97 Aligned_cols=154 Identities=18% Similarity=0.154 Sum_probs=86.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCC
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIARK 203 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 203 (854)
..-+.|+|+.|+|||+||+.+++. .......+++++ ...+...+...+... .. ..+++.++ .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~------~~~f~~~~~~~l~~~-----~~----~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVR------SELFTEHLVSAIRSG-----EM----QRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEee------HHHHHHHHHHHHhcc-----hH----HHHHHHcc-c
Confidence 356889999999999999999985 322223344554 233444555544321 11 22333333 3
Q ss_pred eEEEEEecCCCcChh--hHHHHHHhhcC-CCCCcEEEEecccH---------HHHhhccCcceEecCCCCHHHHHHHHHH
Q 003037 204 KFLLVLDDVWTEDYN--KWETFQRCLKN-GLRGSKILVTTRKM---------TVAQMMQSNDVILIRELSEQACWSLFEQ 271 (854)
Q Consensus 204 ~~LlVlDdv~~~~~~--~~~~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~l~~~ 271 (854)
.-+|++||+...... ..+.+...+.. ...|..||+||... .+...+.....+.+.+++.++-..++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 458889998542211 12233333321 11345788888542 1223344456899999999999999988
Q ss_pred HhcCCCCCCCchHHHHHHHHHHhhcCCC
Q 003037 272 LAFFGRPRSECEQLIEIGRKIVGKCKGL 299 (854)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~I~~~~~Gl 299 (854)
.+...+..-+ .++..-|++.+.|.
T Consensus 283 k~~~~~~~l~----~evl~~la~~~~~d 306 (445)
T PRK12422 283 KAEALSIRIE----ETALDFLIEALSSN 306 (445)
T ss_pred HHHHcCCCCC----HHHHHHHHHhcCCC
Confidence 7754322122 33444455555543
No 153
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.82 E-value=0.00063 Score=76.48 Aligned_cols=180 Identities=13% Similarity=0.091 Sum_probs=102.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhcccccccc--CeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhc
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNNNDVINHF--EKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIA 201 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 201 (854)
..-+.|+|..|+|||+||+.+++. ....+ ..+++++.. .+...+...+... ..+ .+.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~~----~~~~~~~ 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTSE------KFTNDFVNALRNN-----TME----EFKEKYR 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEHH------HHHHHHHHHHHcC-----cHH----HHHHHHh
Confidence 355889999999999999999985 43333 234455433 3334444444221 122 2333333
Q ss_pred CCeEEEEEecCCCcCh--hhHHHHHHhhcC-CCCCcEEEEecccHH---------HHhhccCcceEecCCCCHHHHHHHH
Q 003037 202 RKKFLLVLDDVWTEDY--NKWETFQRCLKN-GLRGSKILVTTRKMT---------VAQMMQSNDVILIRELSEQACWSLF 269 (854)
Q Consensus 202 ~k~~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~ilvTtR~~~---------v~~~~~~~~~~~l~~L~~~e~~~l~ 269 (854)
+.-+|||||+..... ...+.+...+.. ...|..||+||.... +...+.....+++++.+.++-..++
T Consensus 211 -~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il 289 (450)
T PRK00149 211 -SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAIL 289 (450)
T ss_pred -cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHH
Confidence 344899999954211 112233333221 113445888776431 2223444568999999999999999
Q ss_pred HHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHH----Hhh---hccCCCHHHHHHHHhh
Q 003037 270 EQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTI----GSL---LRFKRSSREWQSILDS 325 (854)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~----~~~---l~~~~~~~~w~~~~~~ 325 (854)
.+.+..... .--+++..-|++.++|..-.+..+ ..+ ....-+.+..+.++..
T Consensus 290 ~~~~~~~~~----~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~ 348 (450)
T PRK00149 290 KKKAEEEGI----DLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKD 348 (450)
T ss_pred HHHHHHcCC----CCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Confidence 988753221 122456777888888887644332 211 1112255666666654
No 154
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.82 E-value=0.00052 Score=73.47 Aligned_cols=150 Identities=9% Similarity=0.096 Sum_probs=93.9
Q ss_pred cccc-chhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccc-------------------cCee
Q 003037 98 EVRG-RDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINH-------------------FEKR 157 (854)
Q Consensus 98 ~~vG-r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~ 157 (854)
.++| -+..++.+...+.... -.....++|+.|+||||+|..+.+..--... +...
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-----l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~ 80 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-----LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDV 80 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCE
Confidence 4677 6667778887776432 3567789999999999999888663110010 1111
Q ss_pred EEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHH----hcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCC
Q 003037 158 IWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYAS----IARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRG 233 (854)
Q Consensus 158 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 233 (854)
.++.... ....++++.+.+... ..+.+-++|+|++...+......++..+...+.+
T Consensus 81 ~~i~~~~--------------------~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~ 140 (329)
T PRK08058 81 HLVAPDG--------------------QSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGG 140 (329)
T ss_pred EEecccc--------------------ccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCC
Confidence 1111100 111223332222211 2355668999999776666778888888887778
Q ss_pred cEEEEecccHH-HH-hhccCcceEecCCCCHHHHHHHHHHH
Q 003037 234 SKILVTTRKMT-VA-QMMQSNDVILIRELSEQACWSLFEQL 272 (854)
Q Consensus 234 s~ilvTtR~~~-v~-~~~~~~~~~~l~~L~~~e~~~l~~~~ 272 (854)
+.+|++|.+.. +. +..+....+++.+++.++..+.+...
T Consensus 141 ~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 141 TTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred ceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 88887776543 22 23344678999999999998888653
No 155
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.81 E-value=0.002 Score=69.14 Aligned_cols=168 Identities=17% Similarity=0.161 Sum_probs=100.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcC
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIAR 202 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 202 (854)
....+.|+|..|.|||.|++++.+. ..........+.++ .+....+++..+... -....++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~~----se~f~~~~v~a~~~~---------~~~~Fk~~y-- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYLT----SEDFTNDFVKALRDN---------EMEKFKEKY-- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEecc----HHHHHHHHHHHHHhh---------hHHHHHHhh--
Confidence 4678999999999999999999994 44444433333332 334444555444221 123344444
Q ss_pred CeEEEEEecCCCcCh-hhH-HHHHHhhcC-CCCCcEEEEecccH---------HHHhhccCcceEecCCCCHHHHHHHHH
Q 003037 203 KKFLLVLDDVWTEDY-NKW-ETFQRCLKN-GLRGSKILVTTRKM---------TVAQMMQSNDVILIRELSEQACWSLFE 270 (854)
Q Consensus 203 k~~LlVlDdv~~~~~-~~~-~~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~l~~ 270 (854)
.-=++++||++.-.. +.| +.+...+.. ...|-.||+|++.. .+...+...-.+++.+.+.+....++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 334889999954211 122 223333332 12334899998642 344445667799999999999999999
Q ss_pred HHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHHH
Q 003037 271 QLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTIG 307 (854)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~ 307 (854)
+.+...+...+.+...-++.++-+-..-+.-|+..+.
T Consensus 255 kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~ 291 (408)
T COG0593 255 KKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLD 291 (408)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 8776544444555555555555554444555554443
No 156
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.79 E-value=0.0005 Score=77.63 Aligned_cols=155 Identities=11% Similarity=0.115 Sum_probs=90.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHhcccccccc--CeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcC
Q 003037 125 QVISLVGMGGIGKTTLAQFAYNNNDVINHF--EKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIAR 202 (854)
Q Consensus 125 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 202 (854)
..+.|+|..|+|||.|++.+++. ....+ ..+++++. .++...+...+... ..+ .+++.+++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yita------eef~~el~~al~~~-----~~~----~f~~~y~~ 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVSS------EEFTNEFINSIRDG-----KGD----SFRRRYRE 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHhc-----cHH----HHHHHhhc
Confidence 34899999999999999999985 32222 23455543 33444444443221 112 22333332
Q ss_pred CeEEEEEecCCCcCh-hhH-HHHHHhhcC-CCCCcEEEEecccH---------HHHhhccCcceEecCCCCHHHHHHHHH
Q 003037 203 KKFLLVLDDVWTEDY-NKW-ETFQRCLKN-GLRGSKILVTTRKM---------TVAQMMQSNDVILIRELSEQACWSLFE 270 (854)
Q Consensus 203 k~~LlVlDdv~~~~~-~~~-~~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~l~~ 270 (854)
.=+|||||+..... ..| +.+...+.. ...|..|||||+.. .+...+...-.+.|.+.+.+.-..++.
T Consensus 378 -~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 378 -MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred -CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 35788999954321 223 223333332 12355688888752 233345556789999999999999999
Q ss_pred HHhcCCCCCCCchHHHHHHHHHHhhcCCCcH
Q 003037 271 QLAFFGRPRSECEQLIEIGRKIVGKCKGLPL 301 (854)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPL 301 (854)
+++........ ++++.-|++++.+..-
T Consensus 457 kka~~r~l~l~----~eVi~yLa~r~~rnvR 483 (617)
T PRK14086 457 KKAVQEQLNAP----PEVLEFIASRISRNIR 483 (617)
T ss_pred HHHHhcCCCCC----HHHHHHHHHhccCCHH
Confidence 88754333223 3455556666655543
No 157
>PRK10536 hypothetical protein; Provisional
Probab=97.76 E-value=0.0005 Score=68.83 Aligned_cols=137 Identities=16% Similarity=0.188 Sum_probs=77.3
Q ss_pred cCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEE----eCC-----c
Q 003037 95 DVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVC----VSD-----P 165 (854)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~----~s~-----~ 165 (854)
+...+.+|......+..++.. ..++.+.|.+|+|||+||.++..+.-..+.|+.++-+. +++ +
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLP 124 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLP 124 (262)
T ss_pred CCccccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCC
Confidence 445678899999999998862 34899999999999999988877422234454443332 111 0
Q ss_pred cCHHHH----HHHHHHHhcCCCCCCccHHHHHH--------HHHHHhcCCeE---EEEEecCCCcChhhHHHHHHhhcCC
Q 003037 166 FDEFRI----AKAIIEALEGSTPSLGELNSLLE--------RIYASIARKKF---LLVLDDVWTEDYNKWETFQRCLKNG 230 (854)
Q Consensus 166 ~~~~~~----~~~i~~~l~~~~~~~~~~~~~~~--------~l~~~l~~k~~---LlVlDdv~~~~~~~~~~l~~~l~~~ 230 (854)
-+..+- +..+...|..-. .....+.... .-..+++++.+ ++|+|++.+-+......+. ..-
T Consensus 125 G~~~eK~~p~~~pi~D~L~~~~-~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~l---tR~ 200 (262)
T PRK10536 125 GDIAEKFAPYFRPVYDVLVRRL-GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFL---TRL 200 (262)
T ss_pred CCHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHH---hhc
Confidence 122221 122222221100 0001111100 01246677755 9999999776554444444 444
Q ss_pred CCCcEEEEecccH
Q 003037 231 LRGSKILVTTRKM 243 (854)
Q Consensus 231 ~~gs~ilvTtR~~ 243 (854)
+.+|++|+|--..
T Consensus 201 g~~sk~v~~GD~~ 213 (262)
T PRK10536 201 GENVTVIVNGDIT 213 (262)
T ss_pred CCCCEEEEeCChh
Confidence 5789999987643
No 158
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.74 E-value=0.00032 Score=82.47 Aligned_cols=156 Identities=17% Similarity=0.160 Sum_probs=87.9
Q ss_pred CccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccc---cc-cCeeEEEEeCCccCHHHHH
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVI---NH-FEKRIWVCVSDPFDEFRIA 172 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~-f~~~~wv~~s~~~~~~~~~ 172 (854)
+.++||+++++++++.|.... ..-+.++|.+|+|||++|+.++...... .. .++.+|.. +...+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l- 253 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL- 253 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH-
Confidence 358999999999999997532 2334689999999999999988741111 11 13444421 11111
Q ss_pred HHHHHHhcCCCCCCccHHHHHHHHHHHh-cCCeEEEEEecCCCc--------ChhhHHHHHHhhcCCCCCcEEEEecccH
Q 003037 173 KAIIEALEGSTPSLGELNSLLERIYASI-ARKKFLLVLDDVWTE--------DYNKWETFQRCLKNGLRGSKILVTTRKM 243 (854)
Q Consensus 173 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 243 (854)
+.+. ....+.+.....+.+.+ +.++.+|++|+++.- ...+...+..++...+ .-++|-+|...
T Consensus 254 ------laG~-~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt~~ 325 (758)
T PRK11034 254 ------LAGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTTYQ 325 (758)
T ss_pred ------hccc-chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCChH
Confidence 1111 11123333333333333 345789999999531 1122333333333222 23455555544
Q ss_pred HHHhh-------ccCcceEecCCCCHHHHHHHHHHH
Q 003037 244 TVAQM-------MQSNDVILIRELSEQACWSLFEQL 272 (854)
Q Consensus 244 ~v~~~-------~~~~~~~~l~~L~~~e~~~l~~~~ 272 (854)
+.... ..-...+.+++.+.+++.+++...
T Consensus 326 E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_pred HHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHH
Confidence 43211 122458999999999999999764
No 159
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.73 E-value=0.00022 Score=81.58 Aligned_cols=60 Identities=13% Similarity=0.179 Sum_probs=45.4
Q ss_pred cCCccccccCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 87 RIPSTSLIDVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 87 ~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
|.....|....+++|.++.++++..++.....+ ....+++.|+|++|+||||+++.++..
T Consensus 74 W~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~-~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 74 WVEKYKPETQHELAVHKKKIEEVETWLKAQVLE-NAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred hHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccc-cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 333344455678999999999999998754321 223467999999999999999999874
No 160
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.73 E-value=0.00047 Score=75.68 Aligned_cols=157 Identities=16% Similarity=0.192 Sum_probs=86.8
Q ss_pred ccccchhHHHHHHHHhcccccc-------cCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHH
Q 003037 98 EVRGRDEEKNTLKSKLLCESSE-------QQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFR 170 (854)
Q Consensus 98 ~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 170 (854)
++.|.++++++|.+.+.-.-.. +....+-+.|+|++|+|||++|+.+++. ....| +.+..+.
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f---i~V~~se------ 252 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF---LRVVGSE------ 252 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE---EEEecch------
Confidence 4678899988888876421110 0124556889999999999999999984 33333 2221111
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCc-----------ChhhHHHHHHh---hcC--CCCCc
Q 003037 171 IAKAIIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTE-----------DYNKWETFQRC---LKN--GLRGS 234 (854)
Q Consensus 171 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~l~~~---l~~--~~~gs 234 (854)
+.. ...+. ....+...+.......+.+|+||++..- +......+... +.. ...+.
T Consensus 253 L~~----k~~Ge-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V 323 (438)
T PTZ00361 253 LIQ----KYLGD-----GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDV 323 (438)
T ss_pred hhh----hhcch-----HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCe
Confidence 111 11000 1111222222223456889999997320 00111122222 221 13456
Q ss_pred EEEEecccHHHHhh-c-c---CcceEecCCCCHHHHHHHHHHHhc
Q 003037 235 KILVTTRKMTVAQM-M-Q---SNDVILIRELSEQACWSLFEQLAF 274 (854)
Q Consensus 235 ~ilvTtR~~~v~~~-~-~---~~~~~~l~~L~~~e~~~l~~~~~~ 274 (854)
+||+||........ + . -...+.+...+.++..++|..++.
T Consensus 324 ~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 324 KVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred EEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 78888875544332 1 1 245788999999999999987653
No 161
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.72 E-value=1.7e-05 Score=80.56 Aligned_cols=96 Identities=22% Similarity=0.139 Sum_probs=58.6
Q ss_pred HHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCchh-----hcccCccEEEEec
Q 003037 631 AKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWI-----VSLNKLKKLVLYQ 705 (854)
Q Consensus 631 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~-----~~l~~L~~L~L~~ 705 (854)
.....+..+++|+.|+|..|... ......+-..++.+++|+.|++ +.|.....=-..+ ...++|+.|.+.+
T Consensus 204 al~eal~~~~~LevLdl~DNtft---~egs~~LakaL~s~~~L~El~l-~dcll~~~Ga~a~~~al~~~~p~L~vl~l~g 279 (382)
T KOG1909|consen 204 ALAEALEHCPHLEVLDLRDNTFT---LEGSVALAKALSSWPHLRELNL-GDCLLENEGAIAFVDALKESAPSLEVLELAG 279 (382)
T ss_pred HHHHHHHhCCcceeeecccchhh---hHHHHHHHHHhcccchheeecc-cccccccccHHHHHHHHhccCCCCceeccCc
Confidence 45566778888888888876210 0112223445666778888888 5554332111111 1567888888888
Q ss_pred ccCCCC----C-CCCCCCCCCCEEEEcCCC
Q 003037 706 FYLCDT----M-PPLGKLPSLEILEIRGNW 730 (854)
Q Consensus 706 ~~~~~~----l-~~l~~L~~L~~L~L~~~~ 730 (854)
|.+... + -.....|.|+.|.|++|.
T Consensus 280 NeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 280 NEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred chhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 876431 1 124458888899998887
No 162
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.72 E-value=0.0018 Score=68.11 Aligned_cols=177 Identities=10% Similarity=0.032 Sum_probs=104.4
Q ss_pred hHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccc-------cCeeEEEEeCCccCHHHHHHHHH
Q 003037 104 EEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINH-------FEKRIWVCVSDPFDEFRIAKAII 176 (854)
Q Consensus 104 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-------f~~~~wv~~s~~~~~~~~~~~i~ 176 (854)
...+++...+...+ -...+.++|+.|+||+++|..++...--.+. -...-++..+..+|...+
T Consensus 10 ~~~~~l~~~~~~~r-----l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i----- 79 (319)
T PRK06090 10 PVWQNWKAGLDAGR-----IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVI----- 79 (319)
T ss_pred HHHHHHHHHHHcCC-----cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEE-----
Confidence 34556666665332 3567889999999999999888662100000 000001111111111000
Q ss_pred HHhcCC-CCCCccHHHHHHHHHHHh-----cCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccHH--HHhh
Q 003037 177 EALEGS-TPSLGELNSLLERIYASI-----ARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKMT--VAQM 248 (854)
Q Consensus 177 ~~l~~~-~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~--v~~~ 248 (854)
... ......++++.+ +.+.+ .+++-++|+|++..........+...+.....++.+|++|.+.. ..+.
T Consensus 80 ---~p~~~~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI 155 (319)
T PRK06090 80 ---KPEKEGKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTI 155 (319)
T ss_pred ---ecCcCCCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHH
Confidence 000 001122333322 22222 24566899999977777788889999988777887777766543 3344
Q ss_pred ccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHH
Q 003037 249 MQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTI 306 (854)
Q Consensus 249 ~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~ 306 (854)
.+....+.+.+++.+++.+.+.... . . .+..+++.++|.|+.+..+
T Consensus 156 ~SRCq~~~~~~~~~~~~~~~L~~~~----~--~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 156 VSRCQQWVVTPPSTAQAMQWLKGQG----I--T------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred HhcceeEeCCCCCHHHHHHHHHHcC----C--c------hHHHHHHHcCCCHHHHHHH
Confidence 4556799999999999999886531 1 1 1345788999999877655
No 163
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.70 E-value=0.00075 Score=75.26 Aligned_cols=166 Identities=13% Similarity=0.194 Sum_probs=89.8
Q ss_pred CCccccchhHHHHHHHHhcccccc-------cCCCeEEEEEEecCCCcHHHHHHHHHhccccccc-----cCeeEEEEeC
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSE-------QQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINH-----FEKRIWVCVS 163 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-----f~~~~wv~~s 163 (854)
-..+.|.+.++++|.+.+.-+-.. +-..++-+.++|++|+|||++|+++++. .... .....|+.+.
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~v~ 258 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLNIK 258 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEecc
Confidence 356889999999988876421100 0123556889999999999999999985 2222 1234455544
Q ss_pred CccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHH-hcCCeEEEEEecCCCcC-------hhhH-----HHHHHhhcCC
Q 003037 164 DPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYAS-IARKKFLLVLDDVWTED-------YNKW-----ETFQRCLKNG 230 (854)
Q Consensus 164 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~-------~~~~-----~~l~~~l~~~ 230 (854)
... + +....+. ....+..+....+.. -.+++++|+||+++.-- .... ..+...+...
T Consensus 259 ~~e----L----l~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl 328 (512)
T TIGR03689 259 GPE----L----LNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGV 328 (512)
T ss_pred chh----h----cccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccc
Confidence 311 1 1100000 000111122222221 13578999999995310 0111 2333333321
Q ss_pred --CCCcEEEEecccHHHHh-h-cc---CcceEecCCCCHHHHHHHHHHHh
Q 003037 231 --LRGSKILVTTRKMTVAQ-M-MQ---SNDVILIRELSEQACWSLFEQLA 273 (854)
Q Consensus 231 --~~gs~ilvTtR~~~v~~-~-~~---~~~~~~l~~L~~~e~~~l~~~~~ 273 (854)
..+..||.||....... . .. -...+.+...+.++..++|..+.
T Consensus 329 ~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 329 ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 13444555664443322 1 12 13468999999999999999875
No 164
>PRK08116 hypothetical protein; Validated
Probab=97.70 E-value=0.00019 Score=74.14 Aligned_cols=103 Identities=26% Similarity=0.296 Sum_probs=59.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCe
Q 003037 125 QVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIARKK 204 (854)
Q Consensus 125 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 204 (854)
..+.|+|..|+|||.||.++++. .......++++++ ..++..+........ ..+ ...+.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~~------~~ll~~i~~~~~~~~--~~~----~~~~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVNF------PQLLNRIKSTYKSSG--KED----ENEIIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEH------HHHHHHHHHHHhccc--ccc----HHHHHHHhcCCC
Confidence 45889999999999999999995 3333335566653 334555544433221 111 122334444434
Q ss_pred EEEEEecCCCcChhhHHH--HHHhhcC-CCCCcEEEEeccc
Q 003037 205 FLLVLDDVWTEDYNKWET--FQRCLKN-GLRGSKILVTTRK 242 (854)
Q Consensus 205 ~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~ilvTtR~ 242 (854)
||||||+..+....|.. +...+.. ...+..+||||..
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 89999995443344533 4443332 1245579999974
No 165
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.67 E-value=0.00033 Score=64.97 Aligned_cols=87 Identities=24% Similarity=0.195 Sum_probs=46.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCC-
Q 003037 125 QVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIARK- 203 (854)
Q Consensus 125 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k- 203 (854)
..+.|+|++|+||||+|+.++.. .......++++..+........... ........ ...........+.+..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLL-LIIVGGKK-ASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHH-hhhhhccC-CCCCHHHHHHHHHHHHHhcC
Confidence 46889999999999999999884 2222224555555443222211111 11111111 1122222333444444443
Q ss_pred eEEEEEecCCCc
Q 003037 204 KFLLVLDDVWTE 215 (854)
Q Consensus 204 ~~LlVlDdv~~~ 215 (854)
..++++|++...
T Consensus 79 ~~viiiDei~~~ 90 (148)
T smart00382 79 PDVLILDEITSL 90 (148)
T ss_pred CCEEEEECCccc
Confidence 499999999664
No 166
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=2.9e-06 Score=83.83 Aligned_cols=165 Identities=19% Similarity=0.230 Sum_probs=113.1
Q ss_pred HHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCC--chhhcccCccEEEEecccCC
Q 003037 632 KSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWP--SWIVSLNKLKKLVLYQFYLC 709 (854)
Q Consensus 632 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp--~~~~~l~~L~~L~L~~~~~~ 709 (854)
....+..|+.|+.|+|.+. ...+.+...+....+|+.|+| +.+.+..+.. --+.+|+.|..|+|++|...
T Consensus 202 l~~iLs~C~kLk~lSlEg~-------~LdD~I~~~iAkN~~L~~lnl-sm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 202 LHGILSQCSKLKNLSLEGL-------RLDDPIVNTIAKNSNLVRLNL-SMCSGFTENALQLLLSSCSRLDELNLSWCFLF 273 (419)
T ss_pred HHHHHHHHHhhhhcccccc-------ccCcHHHHHHhccccceeecc-ccccccchhHHHHHHHhhhhHhhcCchHhhcc
Confidence 3456778889999999887 234556667778889999999 7776644221 12458999999999999765
Q ss_pred CCCCC---CCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCCCccceeeccccccccccccCCCcccc
Q 003037 710 DTMPP---LGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLKQVLFYNICHWEEWDFGKGDSIT 786 (854)
Q Consensus 710 ~~l~~---l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 786 (854)
...-. -.--++|..|+|+++. +.+...-+ ..-...+|+|..|+++++..++.=. -..+.
T Consensus 274 ~~~Vtv~V~hise~l~~LNlsG~r--rnl~~sh~-------------~tL~~rcp~l~~LDLSD~v~l~~~~---~~~~~ 335 (419)
T KOG2120|consen 274 TEKVTVAVAHISETLTQLNLSGYR--RNLQKSHL-------------STLVRRCPNLVHLDLSDSVMLKNDC---FQEFF 335 (419)
T ss_pred chhhhHHHhhhchhhhhhhhhhhH--hhhhhhHH-------------HHHHHhCCceeeeccccccccCchH---HHHHH
Confidence 53221 1224788999999875 12221100 0002368999999999987765411 12455
Q ss_pred CCCccceeeecccccCcCCCcC---CCCCCCcCEEEEecCc
Q 003037 787 IMPQLKKLEFERCTELKSVPEK---LLRSTTLEELSIVECP 824 (854)
Q Consensus 787 ~l~~L~~L~l~~c~~l~~lp~~---l~~l~~L~~L~l~~c~ 824 (854)
.|+.|++|.++.|..+ .|.. +...|+|.+|++.||-
T Consensus 336 kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 336 KFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hcchheeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence 7999999999999644 3543 4567999999999983
No 167
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.64 E-value=0.00056 Score=82.42 Aligned_cols=45 Identities=29% Similarity=0.315 Sum_probs=37.7
Q ss_pred CccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
..+|||+.+++++++.|.... ..-+.++|.+|+|||++|+.++..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHHH
Confidence 459999999999999997532 334669999999999999998874
No 168
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.64 E-value=0.0031 Score=66.51 Aligned_cols=178 Identities=10% Similarity=-0.005 Sum_probs=103.5
Q ss_pred HHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhcccccccc---Ce-----eEEEEeCCccCHHHHHHHHH
Q 003037 105 EKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHF---EK-----RIWVCVSDPFDEFRIAKAII 176 (854)
Q Consensus 105 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~-----~~wv~~s~~~~~~~~~~~i~ 176 (854)
..+.+...+...+ -...+.++|+.|+||+++|..++...--.... .| +-++..+..+|...+
T Consensus 10 ~~~~l~~~~~~~r-----l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i----- 79 (325)
T PRK06871 10 TYQQITQAFQQGL-----GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL----- 79 (325)
T ss_pred HHHHHHHHHHcCC-----cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE-----
Confidence 4455666665322 35677899999999999998887631000000 00 001111111111100
Q ss_pred HHhcCCCCCCccHHHHH---HHHHHH-hcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccH-HHH-hhcc
Q 003037 177 EALEGSTPSLGELNSLL---ERIYAS-IARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKM-TVA-QMMQ 250 (854)
Q Consensus 177 ~~l~~~~~~~~~~~~~~---~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~-~~~~ 250 (854)
.........++++. +.+... ..+++-++|+|+++.........++..+.....++.+|++|.+. .+. +..+
T Consensus 80 ---~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~S 156 (325)
T PRK06871 80 ---EPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYS 156 (325)
T ss_pred ---ccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHh
Confidence 00000112233332 222211 23566788999998777778888999998887888888777654 333 3344
Q ss_pred CcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHH
Q 003037 251 SNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAK 304 (854)
Q Consensus 251 ~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~ 304 (854)
....+.+.+++.+++.+.+..... ... ..+...++.++|.|+.+.
T Consensus 157 RC~~~~~~~~~~~~~~~~L~~~~~-----~~~----~~~~~~~~l~~g~p~~A~ 201 (325)
T PRK06871 157 RCQTWLIHPPEEQQALDWLQAQSS-----AEI----SEILTALRINYGRPLLAL 201 (325)
T ss_pred hceEEeCCCCCHHHHHHHHHHHhc-----cCh----HHHHHHHHHcCCCHHHHH
Confidence 467999999999999998877531 111 124556788999996443
No 169
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.62 E-value=0.0016 Score=71.00 Aligned_cols=156 Identities=13% Similarity=0.172 Sum_probs=85.5
Q ss_pred ccccchhHHHHHHHHhcccccc-------cCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHH
Q 003037 98 EVRGRDEEKNTLKSKLLCESSE-------QQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFR 170 (854)
Q Consensus 98 ~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 170 (854)
++.|.+..+++|.+.+.-+-.. +-..++-+.++|++|+|||++|+.+++. ....| +.+.. ..
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f-----i~i~~----s~ 214 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF-----IRVVG----SE 214 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----HH
Confidence 5789888888887765321100 0234677889999999999999999984 33333 22211 11
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCc-----------Chh---hHHHHHHhhcC--CCCCc
Q 003037 171 IAKAIIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTE-----------DYN---KWETFQRCLKN--GLRGS 234 (854)
Q Consensus 171 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~---~~~~l~~~l~~--~~~gs 234 (854)
+ .....+. ....+...+.......+.+|+||++..- +.. .+..+...+.. ...+.
T Consensus 215 l----~~k~~ge-----~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v 285 (398)
T PTZ00454 215 F----VQKYLGE-----GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNV 285 (398)
T ss_pred H----HHHhcch-----hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCE
Confidence 1 1111010 1111222222233467899999997421 001 11222222221 22456
Q ss_pred EEEEecccHHHHhh--cc---CcceEecCCCCHHHHHHHHHHHh
Q 003037 235 KILVTTRKMTVAQM--MQ---SNDVILIRELSEQACWSLFEQLA 273 (854)
Q Consensus 235 ~ilvTtR~~~v~~~--~~---~~~~~~l~~L~~~e~~~l~~~~~ 273 (854)
.||+||........ .. -...+.+...+.++..++|..+.
T Consensus 286 ~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~ 329 (398)
T PTZ00454 286 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTIT 329 (398)
T ss_pred EEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHH
Confidence 78888875543322 22 24568888888888888887654
No 170
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=2.1e-05 Score=77.89 Aligned_cols=61 Identities=25% Similarity=0.254 Sum_probs=29.3
Q ss_pred cCCCcccEEEecCCCCccccccccccccccccccCCCceeeecCCCCc----ccchhhhcCCCCcEEeecCcc
Q 003037 505 DQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIE----ELPETCCELFNVQTLEVLDCR 573 (854)
Q Consensus 505 ~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~----~lP~~i~~L~~L~~L~l~~~~ 573 (854)
..++.++.|||.+|...+ ..++-.-+.+|++|++|+|+.|.+. .+| ..+.+|++|-|.+..
T Consensus 68 ~~~~~v~elDL~~N~iSd-----WseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~ 132 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISD-----WSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTG 132 (418)
T ss_pred HHhhhhhhhhcccchhcc-----HHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCC
Confidence 345556666666665111 1223333445566666666666533 233 233455555555443
No 171
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.60 E-value=1.1e-05 Score=89.73 Aligned_cols=98 Identities=19% Similarity=0.270 Sum_probs=70.5
Q ss_pred cCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccccCCCceeeecCCCCcccchhh
Q 003037 479 SAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIEELPETC 558 (854)
Q Consensus 479 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~~lP~~i 558 (854)
.+..+..+.+..+. +.. .-..+..+++|..|++.+|. +..+...+..+.+|++|++++|.|+.+. .+
T Consensus 70 ~l~~l~~l~l~~n~---i~~-~~~~l~~~~~l~~l~l~~n~--------i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l 136 (414)
T KOG0531|consen 70 SLTSLKELNLRQNL---IAK-ILNHLSKLKSLEALDLYDNK--------IEKIENLLSSLVNLQVLDLSFNKITKLE-GL 136 (414)
T ss_pred HhHhHHhhccchhh---hhh-hhcccccccceeeeeccccc--------hhhcccchhhhhcchheecccccccccc-ch
Confidence 44555556655555 222 22336788999999999998 8887766888999999999999988886 47
Q ss_pred hcCCCCcEEeecCcccccccccccccCCCCccc
Q 003037 559 CELFNVQTLEVLDCRSFRRLPQGFGKLVNLRNL 591 (854)
Q Consensus 559 ~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L 591 (854)
..+..|+.|++.+|. +..++. +..+++|+.+
T Consensus 137 ~~l~~L~~L~l~~N~-i~~~~~-~~~l~~L~~l 167 (414)
T KOG0531|consen 137 STLTLLKELNLSGNL-ISDISG-LESLKSLKLL 167 (414)
T ss_pred hhccchhhheeccCc-chhccC-Cccchhhhcc
Confidence 788889999999988 665543 4445555554
No 172
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.59 E-value=5.5e-06 Score=85.90 Aligned_cols=265 Identities=17% Similarity=0.189 Sum_probs=143.5
Q ss_pred CcccEEEecCCCCccccccccccccccccccCCCceeeecCCC-Cc--ccchhhhcCCCCcEEeecCcccccccccc--c
Q 003037 508 TCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLD-IE--ELPETCCELFNVQTLEVLDCRSFRRLPQG--F 582 (854)
Q Consensus 508 ~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~-i~--~lP~~i~~L~~L~~L~l~~~~~l~~lp~~--i 582 (854)
..|+.|.++|+.... ...+-....+++++++|.+.++. |+ .+-.--..+.+|++|++..|..++..--. .
T Consensus 138 g~lk~LSlrG~r~v~-----~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la 212 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVG-----DSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA 212 (483)
T ss_pred cccccccccccccCC-----cchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH
Confidence 467888888887311 12222334556677777777665 22 11111234667777777776644322110 1
Q ss_pred ccCCCCcccCceeecCCCCCCcccccccccCCceeEEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHH
Q 003037 583 GKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKA 662 (854)
Q Consensus 583 ~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 662 (854)
..+++|.+| .+.+...+.. ..+.....+++.++.+.+.+|.. ...+.
T Consensus 213 ~gC~kL~~l--------------------------NlSwc~qi~~--~gv~~~~rG~~~l~~~~~kGC~e-----~~le~ 259 (483)
T KOG4341|consen 213 EGCRKLKYL--------------------------NLSWCPQISG--NGVQALQRGCKELEKLSLKGCLE-----LELEA 259 (483)
T ss_pred HhhhhHHHh--------------------------hhccCchhhc--CcchHHhccchhhhhhhhccccc-----ccHHH
Confidence 123333333 1122211111 11122334455556665555511 11111
Q ss_pred HhhhCCCCCCCCeEEEeccCCCCCCCCchhh--cccCccEEEEecccCCCCCC--CCC-CCCCCCEEEEcCCCCceEeCc
Q 003037 663 IIEALQPPPNIESLRIEYHYIGISGWPSWIV--SLNKLKKLVLYQFYLCDTMP--PLG-KLPSLEILEIRGNWNVKRVGD 737 (854)
Q Consensus 663 ~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~--~l~~L~~L~L~~~~~~~~l~--~l~-~L~~L~~L~L~~~~~l~~i~~ 737 (854)
+...-...+-+-++++ ..|.......-|.- .+..|+.|+.++|......+ .++ +.++|+.|.+.+|..+...+-
T Consensus 260 l~~~~~~~~~i~~lnl-~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~f 338 (483)
T KOG4341|consen 260 LLKAAAYCLEILKLNL-QHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGF 338 (483)
T ss_pred HHHHhccChHhhccch-hhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhh
Confidence 2111123344555555 44433332222322 57889999999987655433 243 479999999999987655544
Q ss_pred cccCCCCCCCCccccCCccccCCCccceeeccccccccccccCCCccccCCCccceeeecccccCcCC-----CcCCCCC
Q 003037 738 EFLGVGGGDHLHGISTSSSVIAFPKLKQVLFYNICHWEEWDFGKGDSITIMPQLKKLEFERCTELKSV-----PEKLLRS 812 (854)
Q Consensus 738 ~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-----p~~l~~l 812 (854)
..++ ...+.|+.+.+.+|.....-.... ...++|.|++|.++.|..+... ..+-..+
T Consensus 339 t~l~----------------rn~~~Le~l~~e~~~~~~d~tL~s--ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~ 400 (483)
T KOG4341|consen 339 TMLG----------------RNCPHLERLDLEECGLITDGTLAS--LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSL 400 (483)
T ss_pred hhhh----------------cCChhhhhhcccccceehhhhHhh--hccCCchhccCChhhhhhhhhhhhhhhhhccccc
Confidence 3332 257888888887765433221100 1127899999999999766643 3333456
Q ss_pred CCcCEEEEecCcchHHh
Q 003037 813 TTLEELSIVECPILVER 829 (854)
Q Consensus 813 ~~L~~L~l~~c~~l~~~ 829 (854)
..|..+.+++||.+.+.
T Consensus 401 ~~l~~lEL~n~p~i~d~ 417 (483)
T KOG4341|consen 401 EGLEVLELDNCPLITDA 417 (483)
T ss_pred cccceeeecCCCCchHH
Confidence 78999999999988764
No 173
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.58 E-value=0.0013 Score=72.15 Aligned_cols=119 Identities=18% Similarity=0.215 Sum_probs=75.9
Q ss_pred EEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCeE
Q 003037 126 VISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIARKKF 205 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~ 205 (854)
++.|.|+-++||||+++.+... ..+. .+++...+......-+.+..+ .+...-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d~~~-----------------~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLDLLR-----------------AYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHHHHH-----------------HHHHhhccCCc
Confidence 9999999999999999777663 2222 555554432211111111111 11111112788
Q ss_pred EEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccHHHHhh------ccCcceEecCCCCHHHHHHHH
Q 003037 206 LLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKMTVAQM------MQSNDVILIRELSEQACWSLF 269 (854)
Q Consensus 206 LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~------~~~~~~~~l~~L~~~e~~~l~ 269 (854)
.++||.|.. ...|+.....+...+.. +|++|+-+...... .+-...+++.|||..|-..+.
T Consensus 97 yifLDEIq~--v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 97 YIFLDEIQN--VPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred eEEEecccC--chhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 999999954 57899888888776655 88888876543322 123568999999999987654
No 174
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.53 E-value=0.0013 Score=78.34 Aligned_cols=123 Identities=14% Similarity=0.211 Sum_probs=73.3
Q ss_pred CccccchhHHHHHHHHhcccccc---cCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHH
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSE---QQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAK 173 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 173 (854)
..++|.++.++.+...+.....+ +.....++.++|+.|+|||+||+.++.. . +...+.++.++..+..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~~---- 524 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEKH---- 524 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhcc----
Confidence 45889999999998887643210 0123457889999999999999999883 2 2334556655432211
Q ss_pred HHHHHhcCCCCCCccHHHHHHHHHHHhcCC-eEEEEEecCCCcChhhHHHHHHhhcCC
Q 003037 174 AIIEALEGSTPSLGELNSLLERIYASIARK-KFLLVLDDVWTEDYNKWETFQRCLKNG 230 (854)
Q Consensus 174 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~~~l~~~l~~~ 230 (854)
.+...++... .-...+. ...+.+.++.+ .-+++||+++....+.+..+...+..+
T Consensus 525 ~~~~lig~~~-gyvg~~~-~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g 580 (731)
T TIGR02639 525 TVSRLIGAPP-GYVGFEQ-GGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYA 580 (731)
T ss_pred cHHHHhcCCC-CCcccch-hhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccC
Confidence 1122222221 1111111 11233333334 459999999887777888888877653
No 175
>CHL00176 ftsH cell division protein; Validated
Probab=97.52 E-value=0.0015 Score=75.61 Aligned_cols=179 Identities=15% Similarity=0.173 Sum_probs=95.7
Q ss_pred CCccccchhHHHHHHHH---hcccccc---cCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHH
Q 003037 96 VSEVRGRDEEKNTLKSK---LLCESSE---QQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEF 169 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~---L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 169 (854)
-.+++|.++..+++.+. +.....- .....+-|.++|++|+|||+||+.++... . +-|+.++..
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~-----~p~i~is~s---- 250 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--E-----VPFFSISGS---- 250 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--C-----CCeeeccHH----
Confidence 35688887766665544 3322110 01234568999999999999999998842 1 223433321
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCc----------ChhhHHH----HHHhhcC--CCCC
Q 003037 170 RIAKAIIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTE----------DYNKWET----FQRCLKN--GLRG 233 (854)
Q Consensus 170 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------~~~~~~~----l~~~l~~--~~~g 233 (854)
.+. ....+ .....+...+.+.....+++|+|||+..- ....++. +...+.. ...+
T Consensus 251 ~f~----~~~~g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ 321 (638)
T CHL00176 251 EFV----EMFVG-----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKG 321 (638)
T ss_pred HHH----HHhhh-----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCC
Confidence 111 11100 01122333444445677899999999421 0112222 2222221 2345
Q ss_pred cEEEEecccHHHHhh--cc---CcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCC
Q 003037 234 SKILVTTRKMTVAQM--MQ---SNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGL 299 (854)
Q Consensus 234 s~ilvTtR~~~v~~~--~~---~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~Gl 299 (854)
..||.||........ .. -...+.+...+.++-.++++.++..... .. ......+++.+.|.
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~----d~~l~~lA~~t~G~ 387 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SP----DVSLELIARRTPGF 387 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-ch----hHHHHHHHhcCCCC
Confidence 566767765443221 11 1357888888889988898887643111 11 12335577777773
No 176
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.0057 Score=65.24 Aligned_cols=180 Identities=10% Similarity=0.040 Sum_probs=105.4
Q ss_pred hHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhcccc---ccccCe-----eEEEEeCCccCHHHHHHHH
Q 003037 104 EEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDV---INHFEK-----RIWVCVSDPFDEFRIAKAI 175 (854)
Q Consensus 104 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~f~~-----~~wv~~s~~~~~~~~~~~i 175 (854)
...+++...+...+ -...+.++|+.|+||+++|..++...-- ...-.| +.++.....+|...+
T Consensus 9 ~~~~~l~~~~~~~r-----l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i---- 79 (334)
T PRK07993 9 PDYEQLVGSYQAGR-----GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL---- 79 (334)
T ss_pred HHHHHHHHHHHcCC-----cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE----
Confidence 34566777665432 3567889999999999999887663100 000000 001111111111100
Q ss_pred HHHhcCCC-CCCccHHHHHHHHHHHh-----cCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccHH-HH-h
Q 003037 176 IEALEGST-PSLGELNSLLERIYASI-----ARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKMT-VA-Q 247 (854)
Q Consensus 176 ~~~l~~~~-~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~-~ 247 (854)
.... .....++++.+ +.+.+ .+++-++|+|+++.........++..+...+.++.+|++|.+.+ +. +
T Consensus 80 ----~p~~~~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpT 154 (334)
T PRK07993 80 ----TPEKGKSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLAT 154 (334)
T ss_pred ----ecccccccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHH
Confidence 0000 01122333332 22222 36677999999977777778889998888777887777776543 33 3
Q ss_pred hccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHH
Q 003037 248 MMQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTI 306 (854)
Q Consensus 248 ~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~ 306 (854)
..+-...+.+.+++.+++.+.+..... .. .+.+..+++.++|.|..+..+
T Consensus 155 IrSRCq~~~~~~~~~~~~~~~L~~~~~-----~~----~~~a~~~~~la~G~~~~Al~l 204 (334)
T PRK07993 155 LRSRCRLHYLAPPPEQYALTWLSREVT-----MS----QDALLAALRLSAGAPGAALAL 204 (334)
T ss_pred HHhccccccCCCCCHHHHHHHHHHccC-----CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 344467889999999999988865321 11 223567888999999654433
No 177
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.50 E-value=0.0018 Score=78.41 Aligned_cols=138 Identities=16% Similarity=0.289 Sum_probs=80.2
Q ss_pred CccccchhHHHHHHHHhcccccc---cCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHH
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSE---QQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAK 173 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 173 (854)
..++|.+..++.+...+.....+ +.....++.++|+.|+|||++|+.+... ....-...+.++.+...+...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~--- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHS--- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccch---
Confidence 45899999999999988754321 0123467889999999999999999873 222222334445544322111
Q ss_pred HHHHHhcCCCCCCccHHHHHHHHHHHhcCC-eEEEEEecCCCcChhhHHHHHHhhcCCC-----------CCcEEEEecc
Q 003037 174 AIIEALEGSTPSLGELNSLLERIYASIARK-KFLLVLDDVWTEDYNKWETFQRCLKNGL-----------RGSKILVTTR 241 (854)
Q Consensus 174 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR 241 (854)
....++.. +.-...++ ...+...++.+ ..+|+||++.......+..+...+..+. ..+-||+||.
T Consensus 640 -~~~l~g~~-~g~~g~~~-~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn 716 (852)
T TIGR03346 640 -VARLIGAP-PGYVGYEE-GGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSN 716 (852)
T ss_pred -HHHhcCCC-CCccCccc-ccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCC
Confidence 11112222 11111110 11222333333 3499999998877888888888876541 2344777776
Q ss_pred c
Q 003037 242 K 242 (854)
Q Consensus 242 ~ 242 (854)
.
T Consensus 717 ~ 717 (852)
T TIGR03346 717 L 717 (852)
T ss_pred c
Confidence 4
No 178
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.49 E-value=0.00035 Score=74.76 Aligned_cols=75 Identities=20% Similarity=0.269 Sum_probs=44.3
Q ss_pred ccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCchhhcccCccEEEEecccCCCCCCCC
Q 003037 636 LEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCDTMPPL 715 (854)
Q Consensus 636 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l 715 (854)
+..+.++..|+++.| ....++ .-+++|+.|.+ .+|.....+|..+ .++|++|.+++|.....+|
T Consensus 48 ~~~~~~l~~L~Is~c--------~L~sLP---~LP~sLtsL~L-snc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-- 111 (426)
T PRK15386 48 IEEARASGRLYIKDC--------DIESLP---VLPNELTEITI-ENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-- 111 (426)
T ss_pred HHHhcCCCEEEeCCC--------CCcccC---CCCCCCcEEEc-cCCCCcccCCchh--hhhhhheEccCcccccccc--
Confidence 445577788888766 122222 12457888888 5555444466544 3578888888775444343
Q ss_pred CCCCCCCEEEEcCC
Q 003037 716 GKLPSLEILEIRGN 729 (854)
Q Consensus 716 ~~L~~L~~L~L~~~ 729 (854)
++|+.|++..+
T Consensus 112 ---~sLe~L~L~~n 122 (426)
T PRK15386 112 ---ESVRSLEIKGS 122 (426)
T ss_pred ---cccceEEeCCC
Confidence 35666666543
No 179
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.47 E-value=0.0016 Score=78.66 Aligned_cols=138 Identities=16% Similarity=0.277 Sum_probs=77.9
Q ss_pred CccccchhHHHHHHHHhcccccc---cCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHH
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSE---QQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAK 173 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 173 (854)
..++|.+..++.+...+.....+ +.....++.++|+.|+|||++|+.+++. ....-...+.++++.... .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~-~---- 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFME-K---- 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhh-h----
Confidence 35899999999998888643210 0122357889999999999999999873 211112334444443211 1
Q ss_pred HHHHHhcCCCCCCccHHHHHHHHHHHhcCC-eEEEEEecCCCcChhhHHHHHHhhcCCC-----------CCcEEEEecc
Q 003037 174 AIIEALEGSTPSLGELNSLLERIYASIARK-KFLLVLDDVWTEDYNKWETFQRCLKNGL-----------RGSKILVTTR 241 (854)
Q Consensus 174 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR 241 (854)
.....+.+..+.-...+. ...+...++.+ .-+|+|||+.......+..+...+..+. ..+.||+||.
T Consensus 641 ~~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN 719 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSN 719 (857)
T ss_pred hhHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCC
Confidence 112222222211111111 11233333333 3699999997767778888888775431 2233777876
Q ss_pred c
Q 003037 242 K 242 (854)
Q Consensus 242 ~ 242 (854)
.
T Consensus 720 ~ 720 (857)
T PRK10865 720 L 720 (857)
T ss_pred c
Confidence 4
No 180
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.46 E-value=0.0055 Score=68.56 Aligned_cols=205 Identities=15% Similarity=0.114 Sum_probs=120.7
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccc------cccccCeeEEEEeCCccCHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNND------VINHFEKRIWVCVSDPFDEF 169 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~------~~~~f~~~~wv~~s~~~~~~ 169 (854)
+..+-+|+.|..+|.+.+...-.+ ++..+.+.|.|.+|.|||+.+..|.+... -...| ..+.|+...-..+.
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f-~yveINgm~l~~~~ 472 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKF-DYVEINGLRLASPR 472 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCc-cEEEEcceeecCHH
Confidence 456789999999998887654432 23456999999999999999999988421 11234 33455555566799
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHHhc-----CCeEEEEEecCCCcChhhHHHHHHhhcCC-CCCcEEEEecc-c
Q 003037 170 RIAKAIIEALEGSTPSLGELNSLLERIYASIA-----RKKFLLVLDDVWTEDYNKWETFQRCLKNG-LRGSKILVTTR-K 242 (854)
Q Consensus 170 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR-~ 242 (854)
+++..|..++.+.... .....+.+..+.. .+.+++++|++..--...-+.+...|.|. .++||++|-+= +
T Consensus 473 ~~Y~~I~~~lsg~~~~---~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaN 549 (767)
T KOG1514|consen 473 EIYEKIWEALSGERVT---WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIAN 549 (767)
T ss_pred HHHHHHHHhcccCccc---HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecc
Confidence 9999999999876422 2233444444443 45788999987221001123344555543 47787765432 1
Q ss_pred H-HHHhh-c-------cCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHH
Q 003037 243 M-TVAQM-M-------QSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTI 306 (854)
Q Consensus 243 ~-~v~~~-~-------~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~ 306 (854)
. +.... + -....+...|-+.++-.++...+..+. ..-.....+=+|++|+.-.|-.-.|+.+.
T Consensus 550 TmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic 621 (767)
T KOG1514|consen 550 TMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDIC 621 (767)
T ss_pred cccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHH
Confidence 1 11110 1 113466777777777777776655332 11223344445555555555555555444
No 181
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.42 E-value=6.9e-05 Score=87.13 Aligned_cols=102 Identities=22% Similarity=0.197 Sum_probs=57.8
Q ss_pred CCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccccCCCceeeecCCCCcccchhhhc
Q 003037 481 KKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIEELPETCCE 560 (854)
Q Consensus 481 ~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~~lP~~i~~ 560 (854)
.+|+.|++.+.... ..+++...-..|+.|+.|.+++-... ..++-.-..++++|+.||+|+++++.+ .++++
T Consensus 122 ~nL~~LdI~G~~~~-s~~W~~kig~~LPsL~sL~i~~~~~~------~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~ 193 (699)
T KOG3665|consen 122 QNLQHLDISGSELF-SNGWPKKIGTMLPSLRSLVISGRQFD------NDDFSQLCASFPNLRSLDISGTNISNL-SGISR 193 (699)
T ss_pred HhhhhcCccccchh-hccHHHHHhhhCcccceEEecCceec------chhHHHHhhccCccceeecCCCCccCc-HHHhc
Confidence 46777777664432 23333333355777777777775421 111223345667777777777777777 56777
Q ss_pred CCCCcEEeecCcccccccc--cccccCCCCccc
Q 003037 561 LFNVQTLEVLDCRSFRRLP--QGFGKLVNLRNL 591 (854)
Q Consensus 561 L~~L~~L~l~~~~~l~~lp--~~i~~L~~L~~L 591 (854)
|+|||+|.+++-. +..-+ .++.+|++|+.|
T Consensus 194 LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vL 225 (699)
T KOG3665|consen 194 LKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVL 225 (699)
T ss_pred cccHHHHhccCCC-CCchhhHHHHhcccCCCee
Confidence 7777777776544 22211 124445555555
No 182
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.41 E-value=1.5e-05 Score=88.71 Aligned_cols=101 Identities=19% Similarity=0.251 Sum_probs=78.9
Q ss_pred ccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccccCCCceeeecCCCCcccc
Q 003037 476 SIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIEELP 555 (854)
Q Consensus 476 ~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~~lP 555 (854)
.+..+.+|..|.+.++. +.. +...+..+.+|++|++++|. |..+. .+..|..|+.|++++|.|+.++
T Consensus 90 ~l~~~~~l~~l~l~~n~---i~~-i~~~l~~~~~L~~L~ls~N~--------I~~i~-~l~~l~~L~~L~l~~N~i~~~~ 156 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNK---IEK-IENLLSSLVNLQVLDLSFNK--------ITKLE-GLSTLTLLKELNLSGNLISDIS 156 (414)
T ss_pred ccccccceeeeeccccc---hhh-cccchhhhhcchheeccccc--------ccccc-chhhccchhhheeccCcchhcc
Confidence 36678889999999888 444 23336789999999999999 88874 5788888999999999998876
Q ss_pred hhhhcCCCCcEEeecCcccccccccc-cccCCCCccc
Q 003037 556 ETCCELFNVQTLEVLDCRSFRRLPQG-FGKLVNLRNL 591 (854)
Q Consensus 556 ~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L 591 (854)
. +..+++|+.+++++|. +..++.. +..+.+|+.+
T Consensus 157 ~-~~~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l 191 (414)
T KOG0531|consen 157 G-LESLKSLKLLDLSYNR-IVDIENDELSELISLEEL 191 (414)
T ss_pred C-CccchhhhcccCCcch-hhhhhhhhhhhccchHHH
Confidence 3 5669999999999998 6666653 3556666655
No 183
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.00051 Score=79.07 Aligned_cols=127 Identities=16% Similarity=0.303 Sum_probs=82.0
Q ss_pred CCccccchhHHHHHHHHhcccccc---cCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSE---QQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIA 172 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 172 (854)
...++|.++.++.+.+.+...+.+ ++....+....|+.|+|||-||++++.. .-+.=+..+-++.|+.....
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~--Lfg~e~aliR~DMSEy~EkH--- 564 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA--LFGDEQALIRIDMSEYMEKH--- 564 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH--hcCCCccceeechHHHHHHH---
Confidence 456899999999999988765432 1345678888999999999999999873 21111344555555432221
Q ss_pred HHHHHHhcCCCCCCccHHHHHHHHHHHhcCCeE-EEEEecCCCcChhhHHHHHHhhcCC
Q 003037 173 KAIIEALEGSTPSLGELNSLLERIYASIARKKF-LLVLDDVWTEDYNKWETFQRCLKNG 230 (854)
Q Consensus 173 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~~~~~~~~l~~~l~~~ 230 (854)
.+.+.++.+ +.--..++ -..|-+..+.++| +|.||++....++.+..+.+.+..+
T Consensus 565 -sVSrLIGaP-PGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 565 -SVSRLIGAP-PGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred -HHHHHhCCC-CCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 222333333 22111111 2345556677877 8889999887788888888888765
No 184
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.37 E-value=0.00077 Score=81.01 Aligned_cols=136 Identities=20% Similarity=0.279 Sum_probs=78.3
Q ss_pred CccccchhHHHHHHHHhccccc---ccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHH
Q 003037 97 SEVRGRDEEKNTLKSKLLCESS---EQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAK 173 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 173 (854)
..++|.++.++.+.+.+..... .+.....++.++|+.|+|||.||+.++.. .-+.....+-++++...+. .
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~----~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEA----H 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhh----h
Confidence 4689999999999998864321 11234568899999999999999988773 2121222233333322111 1
Q ss_pred HHHHHhcCCCCCC--ccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCC-----------CCcEEEEec
Q 003037 174 AIIEALEGSTPSL--GELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGL-----------RGSKILVTT 240 (854)
Q Consensus 174 ~i~~~l~~~~~~~--~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTt 240 (854)
.+.+.++...... .....+...++ +...-+|+||++...++..++.+.+.+..+. ..+-||+||
T Consensus 640 ~~~~l~g~~~gyvg~~~~g~L~~~v~---~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TS 716 (852)
T TIGR03345 640 TVSRLKGSPPGYVGYGEGGVLTEAVR---RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTS 716 (852)
T ss_pred hhccccCCCCCcccccccchHHHHHH---hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeC
Confidence 1111222221110 11112223332 2445699999998777777888888776552 445566666
Q ss_pred c
Q 003037 241 R 241 (854)
Q Consensus 241 R 241 (854)
.
T Consensus 717 N 717 (852)
T TIGR03345 717 N 717 (852)
T ss_pred C
Confidence 5
No 185
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.36 E-value=0.0066 Score=64.57 Aligned_cols=94 Identities=12% Similarity=0.173 Sum_probs=67.2
Q ss_pred CCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccH-HHH-hhccCcceEecCCCCHHHHHHHHHHHhcCCCCC
Q 003037 202 RKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKM-TVA-QMMQSNDVILIRELSEQACWSLFEQLAFFGRPR 279 (854)
Q Consensus 202 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~-~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~ 279 (854)
+++-++|+|+++......+..++..+.....++.+|++|.+. .+. +..+-...+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~-- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---V-- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---C--
Confidence 456689999998877888899999998877788776666553 333 334446789999999999999997641 1
Q ss_pred CCchHHHHHHHHHHhhcCCCcHHHHHHH
Q 003037 280 SECEQLIEIGRKIVGKCKGLPLAAKTIG 307 (854)
Q Consensus 280 ~~~~~~~~~~~~I~~~~~GlPLai~~~~ 307 (854)
. + ...++..++|.|+.+..+.
T Consensus 206 -~-~-----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 206 -A-D-----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred -C-h-----HHHHHHHcCCCHHHHHHHH
Confidence 1 1 1224667899997655443
No 186
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.35 E-value=0.0098 Score=61.55 Aligned_cols=110 Identities=17% Similarity=0.188 Sum_probs=58.0
Q ss_pred EEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHH------------HHHhcCCCCCCccHHHHH
Q 003037 126 VISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAI------------IEALEGSTPSLGELNSLL 193 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i------------~~~l~~~~~~~~~~~~~~ 193 (854)
-|.|.|.+|+|||+||+.++.. ... ..+++++....+..+++... .......... .+..-..
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~--lg~---~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 96 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARK--RDR---PVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDI-VRQNWVD 96 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH--hCC---CEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcc-cceeecC
Confidence 4668999999999999999872 222 33455555554444443221 1100000000 0000000
Q ss_pred HHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCC----------------CCCcEEEEeccc
Q 003037 194 ERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNG----------------LRGSKILVTTRK 242 (854)
Q Consensus 194 ~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~----------------~~gs~ilvTtR~ 242 (854)
..+.... .+...+++|++...+.+.+..|...+..+ .++.+||+|+..
T Consensus 97 g~l~~A~-~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~ 160 (262)
T TIGR02640 97 NRLTLAV-REGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNP 160 (262)
T ss_pred chHHHHH-HcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCC
Confidence 0111111 23468999999776666666677766432 135578888764
No 187
>PRK12377 putative replication protein; Provisional
Probab=97.35 E-value=0.00057 Score=69.26 Aligned_cols=101 Identities=20% Similarity=0.205 Sum_probs=56.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCC
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIARK 203 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 203 (854)
...+.|+|.+|+|||+||.++++. .......++++++. +++..+-...... .... .+.+.+ .+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~------~l~~~l~~~~~~~----~~~~----~~l~~l-~~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP------DVMSRLHESYDNG----QSGE----KFLQEL-CK 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH------HHHHHHHHHHhcc----chHH----HHHHHh-cC
Confidence 356899999999999999999995 33333445666553 3444443332111 1111 122222 45
Q ss_pred eEEEEEecCCCcChhhHH--HHHHhhcCC-CCCcEEEEecc
Q 003037 204 KFLLVLDDVWTEDYNKWE--TFQRCLKNG-LRGSKILVTTR 241 (854)
Q Consensus 204 ~~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~ilvTtR 241 (854)
.=||||||+-......|. .+...+... .+.--+||||-
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSN 204 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTN 204 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 669999999443333443 344444321 12234778876
No 188
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.34 E-value=0.0016 Score=71.35 Aligned_cols=152 Identities=16% Similarity=0.180 Sum_probs=85.2
Q ss_pred CccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHH-
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAI- 175 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i- 175 (854)
..++||++.++.+...+.... -|.|.|++|+|||++|+.+.........|... -+..+ ++.+++..+
T Consensus 20 ~~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~-~~~ft---tp~DLfG~l~ 87 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFAFQNARAFEYL-MTRFS---TPEEVFGPLS 87 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHHHhcccCcceee-eeeec---CcHHhcCcHH
Confidence 458999999999999887544 37899999999999999998742222233211 11111 122222211
Q ss_pred HHHhcCCCCCCccHHHHHHHHHHHhcC---CeEEEEEecCCCcChhhHHHHHHhhcCCC---------CCcEEEEecccH
Q 003037 176 IEALEGSTPSLGELNSLLERIYASIAR---KKFLLVLDDVWTEDYNKWETFQRCLKNGL---------RGSKILVTTRKM 243 (854)
Q Consensus 176 ~~~l~~~~~~~~~~~~~~~~l~~~l~~---k~~LlVlDdv~~~~~~~~~~l~~~l~~~~---------~gs~ilvTtR~~ 243 (854)
+..... ... ..+...+ ..-++++|+++.........+...+.... -..+++|++.++
T Consensus 88 i~~~~~----~g~-------f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~ 156 (498)
T PRK13531 88 IQALKD----EGR-------YQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNE 156 (498)
T ss_pred Hhhhhh----cCc-------hhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCC
Confidence 111100 000 0011111 12289999999877777777777774221 223566655543
Q ss_pred HHHh-------hccC-cceEecCCCCHHH-HHHHHHHH
Q 003037 244 TVAQ-------MMQS-NDVILIRELSEQA-CWSLFEQL 272 (854)
Q Consensus 244 ~v~~-------~~~~-~~~~~l~~L~~~e-~~~l~~~~ 272 (854)
... .+.- .-.+.+++++.++ -.+++...
T Consensus 157 -LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 157 -LPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred -CcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 221 1111 2367889998544 47777653
No 189
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.33 E-value=0.0012 Score=69.35 Aligned_cols=121 Identities=17% Similarity=0.199 Sum_probs=69.7
Q ss_pred cchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhc
Q 003037 101 GRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALE 180 (854)
Q Consensus 101 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 180 (854)
+|........+++..-.. ....+-+.|+|..|+|||.||.++++.. ...-..+.+++++ .++..+.....
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l--~~~g~~v~~~~~~------~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANEL--AKKGVSSTLLHFP------EFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCEEEEEHH------HHHHHHHHHHh
Confidence 455555555555543221 1234568999999999999999999953 2222345666553 34455544442
Q ss_pred CCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHH--HHHhh-cCC-CCCcEEEEecc
Q 003037 181 GSTPSLGELNSLLERIYASIARKKFLLVLDDVWTEDYNKWET--FQRCL-KNG-LRGSKILVTTR 241 (854)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~--l~~~l-~~~-~~gs~ilvTtR 241 (854)
.. +.. +.+.. + .+.=||||||+-......|.. +...+ ... ..+-.+|+||-
T Consensus 205 ~~-----~~~---~~l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 205 DG-----SVK---EKIDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred cC-----cHH---HHHHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 21 122 22222 2 355689999997655566753 44443 221 23446888886
No 190
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.32 E-value=0.0037 Score=63.76 Aligned_cols=174 Identities=18% Similarity=0.202 Sum_probs=98.8
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCH-HHHHHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDE-FRIAKA 174 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~-~~~~~~ 174 (854)
...++|-.++..++..++....- .+...-|.|+|+.|.|||+|...+..+ .+..-+..+-|........ .-.++.
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~--~q~~~E~~l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSD--IQENGENFLLVRLNGELQTDKIALKG 98 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhh--HHhcCCeEEEEEECccchhhHHHHHH
Confidence 45689999999999888875433 234445779999999999999877775 2222233445555444332 224555
Q ss_pred HHHHhc----CCCCCCccHHHHHHHHHHHhcC------CeEEEEEecCCCcChhhHHH-HHHhhc----CCCCCcEEEEe
Q 003037 175 IIEALE----GSTPSLGELNSLLERIYASIAR------KKFLLVLDDVWTEDYNKWET-FQRCLK----NGLRGSKILVT 239 (854)
Q Consensus 175 i~~~l~----~~~~~~~~~~~~~~~l~~~l~~------k~~LlVlDdv~~~~~~~~~~-l~~~l~----~~~~gs~ilvT 239 (854)
|.+++. .......+..+....+...|+. -++++|+|.+.---...-.. +...|. ...+-|-|-+|
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 555553 2222233334444455555532 36788888763211111111 222222 23355667799
Q ss_pred cccHH-------HHhhccCcceEecCCCCHHHHHHHHHHHh
Q 003037 240 TRKMT-------VAQMMQSNDVILIRELSEQACWSLFEQLA 273 (854)
Q Consensus 240 tR~~~-------v~~~~~~~~~~~l~~L~~~e~~~l~~~~~ 273 (854)
||-.. |-..+....++-++.++-++-.+++++..
T Consensus 179 trld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 99653 22233333456667778888888887755
No 191
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.32 E-value=0.0012 Score=63.46 Aligned_cols=121 Identities=12% Similarity=0.095 Sum_probs=73.6
Q ss_pred cccccCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHH
Q 003037 91 TSLIDVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFR 170 (854)
Q Consensus 91 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 170 (854)
..|..-.++||-++-++++.-.-. +++.+-+.|.||+|+||||-+..+++..--..+-+++.=.++|+...
T Consensus 21 YrP~~l~dIVGNe~tv~rl~via~------~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRG--- 91 (333)
T KOG0991|consen 21 YRPSVLQDIVGNEDTVERLSVIAK------EGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERG--- 91 (333)
T ss_pred hCchHHHHhhCCHHHHHHHHHHHH------cCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccc---
Confidence 334445679999999999887665 34677788999999999999988887421111223444444443322
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHh-------cCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEE
Q 003037 171 IAKAIIEALEGSTPSLGELNSLLERIYASI-------ARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILV 238 (854)
Q Consensus 171 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-------~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv 238 (854)
++.+...++... .++.-++|||.+.+.....-..++....-.++.+|..+
T Consensus 92 ------------------IDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFal 148 (333)
T KOG0991|consen 92 ------------------IDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFAL 148 (333)
T ss_pred ------------------cHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhh
Confidence 222333332222 25566899999966544555566665554444444443
No 192
>PRK08181 transposase; Validated
Probab=97.30 E-value=0.0014 Score=67.35 Aligned_cols=101 Identities=21% Similarity=0.173 Sum_probs=55.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCe
Q 003037 125 QVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIARKK 204 (854)
Q Consensus 125 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 204 (854)
.-+.|+|++|+|||.||..+.+. .......++|+++ .+++..+..... ..+.+... +.+ .+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~~------~~L~~~l~~a~~-----~~~~~~~l----~~l-~~~ 168 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTRT------TDLVQKLQVARR-----ELQLESAI----AKL-DKF 168 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeeeH------HHHHHHHHHHHh-----CCcHHHHH----HHH-hcC
Confidence 34899999999999999999874 2223334556643 344444433211 11222222 222 234
Q ss_pred EEEEEecCCCcChhhH--HHHHHhhcCCCCCcEEEEecccH
Q 003037 205 FLLVLDDVWTEDYNKW--ETFQRCLKNGLRGSKILVTTRKM 243 (854)
Q Consensus 205 ~LlVlDdv~~~~~~~~--~~l~~~l~~~~~gs~ilvTtR~~ 243 (854)
=||||||+.......| ..+...+...-.+..+||||...
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 5999999954322222 23444443211123588888743
No 193
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.006 Score=62.94 Aligned_cols=201 Identities=15% Similarity=0.207 Sum_probs=109.3
Q ss_pred ccccchhHHHHHHHHhcccccc-------cCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHH
Q 003037 98 EVRGRDEEKNTLKSKLLCESSE-------QQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFR 170 (854)
Q Consensus 98 ~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 170 (854)
.+=|-++++++|.+...-+-.+ +-+.++=|.+||++|.|||-||++|++. ....| +.|..+
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF-----IrvvgS----- 219 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDATF-----IRVVGS----- 219 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCceE-----EEeccH-----
Confidence 3567888888888876433211 1356777889999999999999999994 44444 444321
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHhcC-CeEEEEEecCCC-----------cChhhHHH---HHHhhcCC--CCC
Q 003037 171 IAKAIIEALEGSTPSLGELNSLLERIYASIAR-KKFLLVLDDVWT-----------EDYNKWET---FQRCLKNG--LRG 233 (854)
Q Consensus 171 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~-----------~~~~~~~~---l~~~l~~~--~~g 233 (854)
++.+..-+ +...+.+.+.+..+. .+..|++|.+.. .+.+.-.. |+..+.-+ ...
T Consensus 220 ---ElVqKYiG------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~n 290 (406)
T COG1222 220 ---ELVQKYIG------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGN 290 (406)
T ss_pred ---HHHHHHhc------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCC
Confidence 12222111 223455666665554 489999998732 11122222 33333322 244
Q ss_pred cEEEEecccHHHHhh--ccC---cceEecCCCCHHHH-HHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCc----HHH
Q 003037 234 SKILVTTRKMTVAQM--MQS---NDVILIRELSEQAC-WSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLP----LAA 303 (854)
Q Consensus 234 s~ilvTtR~~~v~~~--~~~---~~~~~l~~L~~~e~-~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlP----Lai 303 (854)
.|||..|-..++... +.+ +..++++ |+..++ .++|.-++. .......-+++. |++.|.|.- -||
T Consensus 291 vKVI~ATNR~D~LDPALLRPGR~DRkIEfp-lPd~~gR~~Il~IHtr-kM~l~~dvd~e~----la~~~~g~sGAdlkai 364 (406)
T COG1222 291 VKVIMATNRPDILDPALLRPGRFDRKIEFP-LPDEEGRAEILKIHTR-KMNLADDVDLEL----LARLTEGFSGADLKAI 364 (406)
T ss_pred eEEEEecCCccccChhhcCCCcccceeecC-CCCHHHHHHHHHHHhh-hccCccCcCHHH----HHHhcCCCchHHHHHH
Confidence 588988865554433 222 4466776 555554 455655442 222233344555 444555554 234
Q ss_pred HHHHhhhcc--CC---CHHHHHHHHhh
Q 003037 304 KTIGSLLRF--KR---SSREWQSILDS 325 (854)
Q Consensus 304 ~~~~~~l~~--~~---~~~~w~~~~~~ 325 (854)
.+=|++++- .+ +.+++....+.
T Consensus 365 ctEAGm~AiR~~R~~Vt~~DF~~Av~K 391 (406)
T COG1222 365 CTEAGMFAIRERRDEVTMEDFLKAVEK 391 (406)
T ss_pred HHHHhHHHHHhccCeecHHHHHHHHHH
Confidence 444555432 22 45555555544
No 194
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.27 E-value=0.001 Score=73.62 Aligned_cols=192 Identities=14% Similarity=0.163 Sum_probs=113.7
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccc----cccccCeeEEEE--eCCccCHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNND----VINHFEKRIWVC--VSDPFDEF 169 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~----~~~~f~~~~wv~--~s~~~~~~ 169 (854)
-+++||.+.....|...+...+ -..-....|+-|+||||+|+-++.-.- ....+...+-.| +.....+
T Consensus 15 F~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~- 88 (515)
T COG2812 15 FDDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLI- 88 (515)
T ss_pred HHHhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcc-
Confidence 4678999999999999997544 345567889999999999988876210 111111111111 0000000
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHH-HhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccHH-H-H
Q 003037 170 RIAKAIIEALEGSTPSLGELNSLLERIYA-SIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKMT-V-A 246 (854)
Q Consensus 170 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v-~ 246 (854)
++++.=........+++++.+.+.- -.++|.-+.|+|.|+-.....|..++..+........+|..|++.. + .
T Consensus 89 ----DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~ 164 (515)
T COG2812 89 ----DVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPN 164 (515)
T ss_pred ----cchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCch
Confidence 0000000011122233333322221 1245666999999976666788888888887777777777776543 2 3
Q ss_pred hhccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcH
Q 003037 247 QMMQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPL 301 (854)
Q Consensus 247 ~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPL 301 (854)
+..+....|.++.++.++....+...+.......+ .+...-|++..+|..-
T Consensus 165 TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e----~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 165 TILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE----EDALSLIARAAEGSLR 215 (515)
T ss_pred hhhhccccccccCCCHHHHHHHHHHHHHhcCCccC----HHHHHHHHHHcCCChh
Confidence 34555789999999999999998887653333222 3334456666766543
No 195
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.26 E-value=0.004 Score=71.00 Aligned_cols=182 Identities=15% Similarity=0.163 Sum_probs=93.5
Q ss_pred ccCCccccchhHHHHHHHHhc---cccc---ccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccC
Q 003037 94 IDVSEVRGRDEEKNTLKSKLL---CESS---EQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFD 167 (854)
Q Consensus 94 ~~~~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 167 (854)
..-.+++|.++.++++.+.+. .... .+....+-+.++|++|+|||+||+.+++.. ... ++.++.
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~--~~~-----~~~i~~--- 121 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--GVP-----FFSISG--- 121 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCC-----eeeccH---
Confidence 334578898877766655443 1110 001234558899999999999999999842 222 233331
Q ss_pred HHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCc----------ChhhHHH----HHHhhcC--CC
Q 003037 168 EFRIAKAIIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTE----------DYNKWET----FQRCLKN--GL 231 (854)
Q Consensus 168 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------~~~~~~~----l~~~l~~--~~ 231 (854)
..+. ....+. ....+...+.......+.+|+|||+..- ....+.. +...+.. ..
T Consensus 122 -~~~~----~~~~g~-----~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 122 -SDFV----EMFVGV-----GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred -HHHH----HHHhcc-----cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 1111 111110 1122333333334456789999998331 0111222 2222221 22
Q ss_pred CCcEEEEecccHHHH-hhc----cCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCc
Q 003037 232 RGSKILVTTRKMTVA-QMM----QSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLP 300 (854)
Q Consensus 232 ~gs~ilvTtR~~~v~-~~~----~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlP 300 (854)
.+..||.||...... ..+ .-...+.++..+.++-.++|..+...... .....+ ..|++.+.|.-
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~~~~l----~~la~~t~G~s 260 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-APDVDL----KAVARRTPGFS 260 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-CcchhH----HHHHHhCCCCC
Confidence 344566666544321 111 12457888888888888888876532211 112222 35666777643
No 196
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.26 E-value=0.0021 Score=76.39 Aligned_cols=166 Identities=18% Similarity=0.230 Sum_probs=89.6
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAI 175 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 175 (854)
...++|.++.+++|.++|............++.++|++|+||||+|+.++.. ....| +-+..+...+...+...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~--l~~~~---~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA--TGRKY---VRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH--hCCCE---EEEEcCCCCCHHHhccch
Confidence 3458999999999998887322110224567999999999999999999973 33233 223344433332221111
Q ss_pred HHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcChh----hHHHHHHhhcCC---------------CCCcEE
Q 003037 176 IEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTEDYN----KWETFQRCLKNG---------------LRGSKI 236 (854)
Q Consensus 176 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~----~~~~l~~~l~~~---------------~~gs~i 236 (854)
-... +. ....+...+... ....-+++||.+..-... ....+...+... -...-+
T Consensus 396 ~~~~-g~-----~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 396 RTYI-GS-----MPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred hccC-CC-----CCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEE
Confidence 0011 11 011222233222 223447899998542211 134555554421 123334
Q ss_pred EEecccHHHHhh-ccCcceEecCCCCHHHHHHHHHHHh
Q 003037 237 LVTTRKMTVAQM-MQSNDVILIRELSEQACWSLFEQLA 273 (854)
Q Consensus 237 lvTtR~~~v~~~-~~~~~~~~l~~L~~~e~~~l~~~~~ 273 (854)
|.|+....+... ..-...+++.+++.+|-.++..++.
T Consensus 469 i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 469 VATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 445543322222 1224578899999999888887764
No 197
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.24 E-value=0.00041 Score=67.57 Aligned_cols=131 Identities=24% Similarity=0.235 Sum_probs=64.0
Q ss_pred ccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCC----c--c---CHHH
Q 003037 100 RGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSD----P--F---DEFR 170 (854)
Q Consensus 100 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~----~--~---~~~~ 170 (854)
..+..+.....+.|. ...++.+.|++|.|||.||.+.+-+.-..+.|+.++++.-.- . | +..+
T Consensus 3 ~p~~~~Q~~~~~al~--------~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~e 74 (205)
T PF02562_consen 3 KPKNEEQKFALDALL--------NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEE 74 (205)
T ss_dssp ---SHHHHHHHHHHH--------H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS------
T ss_pred cCCCHHHHHHHHHHH--------hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHH
Confidence 345566677777776 245899999999999999977776544457888888774211 0 0 1110
Q ss_pred ----HHHHHHHHhcCCCCCCccHHHHHHHH------HHHhcCC---eEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEE
Q 003037 171 ----IAKAIIEALEGSTPSLGELNSLLERI------YASIARK---KFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKIL 237 (854)
Q Consensus 171 ----~~~~i~~~l~~~~~~~~~~~~~~~~l------~~~l~~k---~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il 237 (854)
.+..+...+..-. .....+.+...= ..+++|+ ..++|+|++.+-...++.. .+...+.|||||
T Consensus 75 K~~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~---ilTR~g~~skii 150 (205)
T PF02562_consen 75 KMEPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKM---ILTRIGEGSKII 150 (205)
T ss_dssp ---TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHH---HHTTB-TT-EEE
T ss_pred HHHHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHH---HHcccCCCcEEE
Confidence 1122222221111 111222221100 1334555 4699999997655444444 455556899999
Q ss_pred Eeccc
Q 003037 238 VTTRK 242 (854)
Q Consensus 238 vTtR~ 242 (854)
++--.
T Consensus 151 ~~GD~ 155 (205)
T PF02562_consen 151 ITGDP 155 (205)
T ss_dssp EEE--
T ss_pred EecCc
Confidence 98754
No 198
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.24 E-value=0.0015 Score=74.63 Aligned_cols=169 Identities=18% Similarity=0.254 Sum_probs=88.9
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhcccc--ccccC-eeEEEEeCC---ccCHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDV--INHFE-KRIWVCVSD---PFDEF 169 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~f~-~~~wv~~s~---~~~~~ 169 (854)
-++++|.+..++.+...+... ...-|.|+|.+|+|||++|+.+++.... ...|. ..-|+.+.- .++.+
T Consensus 64 f~~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~ 137 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDER 137 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCcc
Confidence 357999999999998876532 3345679999999999999999863211 11232 123443321 12222
Q ss_pred HHHHHHHHHhcCCC------CCCccHHHH-HHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCC------------
Q 003037 170 RIAKAIIEALEGST------PSLGELNSL-LERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNG------------ 230 (854)
Q Consensus 170 ~~~~~i~~~l~~~~------~~~~~~~~~-~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~------------ 230 (854)
.+...++....... .......+. ...+ -+...=+|+||++..-+......+...+...
T Consensus 138 ~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l---~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~ 214 (531)
T TIGR02902 138 GIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAV---TRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSE 214 (531)
T ss_pred ccchhhcCCcccchhccccccccCCcccccCchh---hccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeecccccccc
Confidence 12111111100000 000000000 0000 1223458999999776666777766655321
Q ss_pred ----------------CCCcEEEEec-ccHH-HHhhc-cCcceEecCCCCHHHHHHHHHHHh
Q 003037 231 ----------------LRGSKILVTT-RKMT-VAQMM-QSNDVILIRELSEQACWSLFEQLA 273 (854)
Q Consensus 231 ----------------~~gs~ilvTt-R~~~-v~~~~-~~~~~~~l~~L~~~e~~~l~~~~~ 273 (854)
....++|.+| ++.. +.... .....+.+++++.+|..+++...+
T Consensus 215 ~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a 276 (531)
T TIGR02902 215 NPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAA 276 (531)
T ss_pred CcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHH
Confidence 1223666554 4332 11111 223577888999888888887765
No 199
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.23 E-value=0.00048 Score=73.74 Aligned_cols=69 Identities=17% Similarity=0.086 Sum_probs=50.4
Q ss_pred HhhhCCCCCCCCeEEEeccCCCCCCCCchhhcccCccEEEEecccCCCCCCCCCCCCCCCEEEEcCCCCceEeCc
Q 003037 663 IIEALQPPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCDTMPPLGKLPSLEILEIRGNWNVKRVGD 737 (854)
Q Consensus 663 ~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~i~~ 737 (854)
..+.+..+.+++.|++ ++|.... +|. -..+|+.|.+++|.....+|..- .++|++|.+++|..+..+|.
T Consensus 44 a~~r~~~~~~l~~L~I-s~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 44 ITPQIEEARASGRLYI-KDCDIES-LPV---LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHHHHHHhcCCCEEEe-CCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCccccccccc
Confidence 3444556689999999 7775444 773 34579999999988777777411 36899999999976766664
No 200
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.23 E-value=0.0026 Score=68.57 Aligned_cols=143 Identities=15% Similarity=0.097 Sum_probs=88.9
Q ss_pred ccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhcccccc-------------------ccCeeE
Q 003037 98 EVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVIN-------------------HFEKRI 158 (854)
Q Consensus 98 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~~ 158 (854)
.++|-+....++..+...... ....+.++|++|+||||+|..+++..--.. ..+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~----~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGR----LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcCC----CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 467888888888888874331 234589999999999999988887421111 123444
Q ss_pred EEEeCCccC---HHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcE
Q 003037 159 WVCVSDPFD---EFRIAKAIIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSK 235 (854)
Q Consensus 159 wv~~s~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 235 (854)
.+..+.... ..+..+++.+....... .++.-++|+|++.....+.-..+...+......++
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 555554433 23334444433322211 36678999999966555666677777777778888
Q ss_pred EEEecccH-HHHhh-ccCcceEecCCC
Q 003037 236 ILVTTRKM-TVAQM-MQSNDVILIREL 260 (854)
Q Consensus 236 ilvTtR~~-~v~~~-~~~~~~~~l~~L 260 (854)
+|++|... .+... ......+++.+.
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~~ 168 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKPP 168 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCCc
Confidence 88888743 22222 222456677663
No 201
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.22 E-value=0.00059 Score=68.00 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=29.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEe
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCV 162 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 162 (854)
.-.++|+|..|+|||||+..+..+ ....|+.+++++-
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEec
Confidence 345779999999999999998874 6778877777654
No 202
>PRK08118 topology modulation protein; Reviewed
Probab=97.21 E-value=0.00018 Score=68.60 Aligned_cols=34 Identities=35% Similarity=0.628 Sum_probs=27.2
Q ss_pred EEEEEecCCCcHHHHHHHHHhccccc-cccCeeEE
Q 003037 126 VISLVGMGGIGKTTLAQFAYNNNDVI-NHFEKRIW 159 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~w 159 (854)
.|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 47899999999999999999864433 45677776
No 203
>PRK06921 hypothetical protein; Provisional
Probab=97.21 E-value=0.0019 Score=66.69 Aligned_cols=99 Identities=20% Similarity=0.320 Sum_probs=55.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhccccccc-cCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcC
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNNNDVINH-FEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIAR 202 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 202 (854)
...+.++|..|+|||+||.++++. .... ...+++++.. .++..+.... +.....+ +.+ .
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~~------~l~~~l~~~~----------~~~~~~~-~~~-~ 176 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPFV------EGFGDLKDDF----------DLLEAKL-NRM-K 176 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEHH------HHHHHHHHHH----------HHHHHHH-HHh-c
Confidence 456899999999999999999985 3332 3456676642 2333332221 1111222 222 3
Q ss_pred CeEEEEEecCCC-----cChhhHHH--HHHhhcCC-CCCcEEEEeccc
Q 003037 203 KKFLLVLDDVWT-----EDYNKWET--FQRCLKNG-LRGSKILVTTRK 242 (854)
Q Consensus 203 k~~LlVlDdv~~-----~~~~~~~~--l~~~l~~~-~~gs~ilvTtR~ 242 (854)
+.=||||||+.. .....|.. +...+... ..+..+||||..
T Consensus 177 ~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 177 KVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred CCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 456999999932 22234443 44433321 124458888863
No 204
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.21 E-value=7.5e-05 Score=65.57 Aligned_cols=91 Identities=14% Similarity=0.224 Sum_probs=73.4
Q ss_pred cCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccccCCCceeeecCCCCcccchhh
Q 003037 479 SAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIEELPETC 558 (854)
Q Consensus 479 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~~lP~~i 558 (854)
...+|....+++|. +..+.+.+-.+++.++.|+|.+|. +.++|..+..++.||.|+++.|.+...|.-|
T Consensus 51 ~~~el~~i~ls~N~---fk~fp~kft~kf~t~t~lNl~~ne--------isdvPeE~Aam~aLr~lNl~~N~l~~~p~vi 119 (177)
T KOG4579|consen 51 KGYELTKISLSDNG---FKKFPKKFTIKFPTATTLNLANNE--------ISDVPEELAAMPALRSLNLRFNPLNAEPRVI 119 (177)
T ss_pred CCceEEEEecccch---hhhCCHHHhhccchhhhhhcchhh--------hhhchHHHhhhHHhhhcccccCccccchHHH
Confidence 34456666777776 666555555677788999999998 8999999999999999999999999999888
Q ss_pred hcCCCCcEEeecCcccccccccc
Q 003037 559 CELFNVQTLEVLDCRSFRRLPQG 581 (854)
Q Consensus 559 ~~L~~L~~L~l~~~~~l~~lp~~ 581 (854)
..|.+|-.|+..+|. ...+|-.
T Consensus 120 ~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 120 APLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred HHHHhHHHhcCCCCc-cccCcHH
Confidence 889999999988887 6667765
No 205
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.18 E-value=0.0023 Score=64.67 Aligned_cols=102 Identities=17% Similarity=0.231 Sum_probs=57.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCC
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIARK 203 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 203 (854)
...+.++|.+|+|||+||.++++. ....-..++++++ .+++..+-..... ...+.+ .+.+.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it~------~~l~~~l~~~~~~---~~~~~~----~~l~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIITV------ADIMSAMKDTFSN---SETSEE----QLLNDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEH------HHHHHHHHHHHhh---ccccHH----HHHHHhc-c
Confidence 347889999999999999999985 3222335556643 3344444333211 111112 2333344 4
Q ss_pred eEEEEEecCCCcChhhHHH--HHHhhcCC-CCCcEEEEecc
Q 003037 204 KFLLVLDDVWTEDYNKWET--FQRCLKNG-LRGSKILVTTR 241 (854)
Q Consensus 204 ~~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~ilvTtR 241 (854)
.=+|||||+.......|+. +...+... ...-.+||||-
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSN 203 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTN 203 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCC
Confidence 4588899996654455654 33333321 12334777776
No 206
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.16 E-value=0.0038 Score=75.01 Aligned_cols=165 Identities=15% Similarity=0.198 Sum_probs=84.6
Q ss_pred CccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHH
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAII 176 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 176 (854)
..++|.++.+++|.+++.........+..++.++|++|+|||++|+.+++. ....| +-++++...+..++...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~--l~~~~---~~i~~~~~~~~~~i~g~-- 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA--LNRKF---VRFSLGGVRDEAEIRGH-- 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH--hcCCe---EEEeCCCcccHHHHcCC--
Confidence 358899999999988664321100123457999999999999999999984 33333 22233332232222110
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcCh----hhHHHHHHhhcC--------C-------CCCcEEE
Q 003037 177 EALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTEDY----NKWETFQRCLKN--------G-------LRGSKIL 237 (854)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~l~~~l~~--------~-------~~gs~il 237 (854)
.... .......+...+... ..++-+++||.+..-.. +....+...+.. . ..+.-+|
T Consensus 393 ---~~~~-~g~~~g~i~~~l~~~-~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I 467 (775)
T TIGR00763 393 ---RRTY-VGAMPGRIIQGLKKA-KTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFI 467 (775)
T ss_pred ---CCce-eCCCCchHHHHHHHh-CcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEE
Confidence 0000 011112233333332 23344789999844211 112334433321 0 0223334
Q ss_pred EecccHH-HHhh-ccCcceEecCCCCHHHHHHHHHHHh
Q 003037 238 VTTRKMT-VAQM-MQSNDVILIRELSEQACWSLFEQLA 273 (854)
Q Consensus 238 vTtR~~~-v~~~-~~~~~~~~l~~L~~~e~~~l~~~~~ 273 (854)
.||.... +... ......+++.+++.++-.+++..+.
T Consensus 468 ~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 468 ATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 4443322 1111 1224578899999888888876653
No 207
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.16 E-value=0.0023 Score=77.33 Aligned_cols=138 Identities=14% Similarity=0.250 Sum_probs=79.4
Q ss_pred CccccchhHHHHHHHHhcccccc---cCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHH
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSE---QQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAK 173 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 173 (854)
..++|.++.++.+...+.....+ +.....++.++|+.|+|||+||+.+++. .-+.-...+-++.+...+...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccH--
Confidence 56899999999998888643211 1223456779999999999999999873 2111123344444443222111
Q ss_pred HHHHHhcCCCCCCccHHHHHHHHHHHhcCCe-EEEEEecCCCcChhhHHHHHHhhcCCC-----------CCcEEEEecc
Q 003037 174 AIIEALEGSTPSLGELNSLLERIYASIARKK-FLLVLDDVWTEDYNKWETFQRCLKNGL-----------RGSKILVTTR 241 (854)
Q Consensus 174 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR 241 (854)
...++.+ +.-...++ ...+.+.++.++ .+++||++.....+.+..+...+..+. ..+-||+||.
T Consensus 585 --~~l~g~~-~gyvg~~~-~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn 660 (821)
T CHL00095 585 --SKLIGSP-PGYVGYNE-GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSN 660 (821)
T ss_pred --HHhcCCC-CcccCcCc-cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCC
Confidence 1112221 11101000 112334444454 589999998777778888888776541 3445666665
Q ss_pred c
Q 003037 242 K 242 (854)
Q Consensus 242 ~ 242 (854)
.
T Consensus 661 ~ 661 (821)
T CHL00095 661 L 661 (821)
T ss_pred c
Confidence 3
No 208
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.15 E-value=0.00083 Score=64.72 Aligned_cols=101 Identities=22% Similarity=0.312 Sum_probs=51.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcC
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIAR 202 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 202 (854)
...-+.|+|..|+|||.||..+.+. ...+-..+.|+++ .+++..+ ...... ...+. .+ +.+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~--~~~~g~~v~f~~~------~~L~~~l----~~~~~~-~~~~~---~~-~~l~- 107 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANE--AIRKGYSVLFITA------SDLLDEL----KQSRSD-GSYEE---LL-KRLK- 107 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEH------HHHHHHH----HCCHCC-TTHCH---HH-HHHH-
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHH--hccCCcceeEeec------Cceeccc----cccccc-cchhh---hc-Cccc-
Confidence 3456899999999999999999884 2222234667753 3333333 222111 12222 22 2333
Q ss_pred CeEEEEEecCCCcChhhHHH--HHHhhcCC-CCCcEEEEeccc
Q 003037 203 KKFLLVLDDVWTEDYNKWET--FQRCLKNG-LRGSKILVTTRK 242 (854)
Q Consensus 203 k~~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~ilvTtR~ 242 (854)
+.=||||||+-......|.. +...+... .++ .+||||..
T Consensus 108 ~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~ 149 (178)
T PF01695_consen 108 RVDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNL 149 (178)
T ss_dssp TSSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS
T ss_pred cccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCC
Confidence 34578899996544444433 32222211 123 58888874
No 209
>PRK06526 transposase; Provisional
Probab=97.15 E-value=0.00093 Score=68.24 Aligned_cols=101 Identities=20% Similarity=0.186 Sum_probs=53.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCC
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIARK 203 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 203 (854)
...+.|+|++|+|||+||..+....... .+ .+.|+ +..+++..+..... ... ....+.+. .+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~-g~-~v~f~------t~~~l~~~l~~~~~-----~~~---~~~~l~~l--~~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQA-GH-RVLFA------TAAQWVARLAAAHH-----AGR---LQAELVKL--GR 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHC-CC-chhhh------hHHHHHHHHHHHHh-----cCc---HHHHHHHh--cc
Confidence 4458999999999999999998742211 22 23343 33344444433211 111 12223222 24
Q ss_pred eEEEEEecCCCcChhhH--HHHHHhhcC-CCCCcEEEEecccH
Q 003037 204 KFLLVLDDVWTEDYNKW--ETFQRCLKN-GLRGSKILVTTRKM 243 (854)
Q Consensus 204 ~~LlVlDdv~~~~~~~~--~~l~~~l~~-~~~gs~ilvTtR~~ 243 (854)
.-+||+||+.......+ +.+...+.. ...++ +|+||...
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 56899999954322222 234444332 12344 88888743
No 210
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.14 E-value=0.0029 Score=62.65 Aligned_cols=209 Identities=12% Similarity=0.142 Sum_probs=119.9
Q ss_pred ccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccc----cccccCeeEEEEeCC---------
Q 003037 98 EVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNND----VINHFEKRIWVCVSD--------- 164 (854)
Q Consensus 98 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~----~~~~f~~~~wv~~s~--------- 164 (854)
.+.++++....+..... .++..-+.++|+.|.||-|.+..+.+..- .+-.-+...|.+-+.
T Consensus 14 ~l~~~~e~~~~Lksl~~------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvs 87 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSS------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVS 87 (351)
T ss_pred hcccHHHHHHHHHHhcc------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEec
Confidence 46777777777777664 23577889999999999998866665311 011223444544222
Q ss_pred -cc-----------CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCeE-EEEEecCCCcChhhHHHHHHhhcCCC
Q 003037 165 -PF-----------DEFRIAKAIIEALEGSTPSLGELNSLLERIYASIARKKF-LLVLDDVWTEDYNKWETFQRCLKNGL 231 (854)
Q Consensus 165 -~~-----------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~~~~~~~~l~~~l~~~~ 231 (854)
++ ..+.+.+++++.+....+- + .-..+.| ++|+-.+..-..++-..++.......
T Consensus 88 S~yHlEitPSDaG~~DRvViQellKevAQt~qi----e--------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs 155 (351)
T KOG2035|consen 88 SNYHLEITPSDAGNYDRVVIQELLKEVAQTQQI----E--------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYS 155 (351)
T ss_pred ccceEEeChhhcCcccHHHHHHHHHHHHhhcch----h--------hccccceEEEEEechHhhhHHHHHHHHHHHHHHh
Confidence 11 1233444444443322110 0 0012344 55666664434455666787777777
Q ss_pred CCcEEEEecccH--HHHhhccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHHHhh
Q 003037 232 RGSKILVTTRKM--TVAQMMQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTIGSL 309 (854)
Q Consensus 232 ~gs~ilvTtR~~--~v~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~ 309 (854)
..+|+|+..-+. -+...-+..-.+++...+++|....+++.+-..+-..+ .+++.+|+++++|+---...+-..
T Consensus 156 ~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp----~~~l~rIa~kS~~nLRrAllmlE~ 231 (351)
T KOG2035|consen 156 SNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP----KELLKRIAEKSNRNLRRALLMLEA 231 (351)
T ss_pred cCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc----HHHHHHHHHHhcccHHHHHHHHHH
Confidence 888988754432 22222223457889999999999999887653332111 678899999999876444333333
Q ss_pred hccC--C--------CHHHHHHHHhhhcC
Q 003037 310 LRFK--R--------SSREWQSILDSEIG 328 (854)
Q Consensus 310 l~~~--~--------~~~~w~~~~~~~~~ 328 (854)
++-+ + ..-+|+-.+.+...
T Consensus 232 ~~~~n~~~~a~~~~i~~~dWe~~i~e~a~ 260 (351)
T KOG2035|consen 232 VRVNNEPFTANSQVIPKPDWEIYIQEIAR 260 (351)
T ss_pred HHhccccccccCCCCCCccHHHHHHHHHH
Confidence 3221 1 23478776655433
No 211
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.14 E-value=2.9e-05 Score=85.88 Aligned_cols=50 Identities=16% Similarity=0.278 Sum_probs=29.1
Q ss_pred CCceeeecCCCCcccchhhhcCCCCcEEeecCcccccccccccccCCCCccc
Q 003037 540 HLRFLKLVWLDIEELPETCCELFNVQTLEVLDCRSFRRLPQGFGKLVNLRNL 591 (854)
Q Consensus 540 ~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L 591 (854)
.|..-+.++|.+..+-+++.-++.|+.|||++|+ +..+- .+..|++|+||
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk-~~~v~-~Lr~l~~LkhL 214 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNK-FTKVD-NLRRLPKLKHL 214 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh-hhhhH-HHHhccccccc
Confidence 4555555666666666666666666666666665 44443 45555555555
No 212
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.13 E-value=0.042 Score=59.13 Aligned_cols=167 Identities=13% Similarity=0.149 Sum_probs=94.1
Q ss_pred chhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccc--cccCeeEEEEe----CCccCHHHHHHHH
Q 003037 102 RDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVI--NHFEKRIWVCV----SDPFDEFRIAKAI 175 (854)
Q Consensus 102 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~f~~~~wv~~----s~~~~~~~~~~~i 175 (854)
|+.-.+.|.+.+.... .....+|+|.|.=|+|||++.+.+.+..+.. ..+ .++|++. ....-...++..|
T Consensus 1 ~~~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~-~~i~fn~w~~~~~~~~~~~~~~~l 76 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKY-IFIYFNAWEYDGEDDLWASFLEEL 76 (325)
T ss_pred ChHHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccce-eeEEEccccCCCcchHHHHHHHHH
Confidence 3455667777777543 2478899999999999999999988853222 112 2333332 2222234455555
Q ss_pred HHHhcCCCCC------------------------------------------------------------------CccH
Q 003037 176 IEALEGSTPS------------------------------------------------------------------LGEL 189 (854)
Q Consensus 176 ~~~l~~~~~~------------------------------------------------------------------~~~~ 189 (854)
..++...... ..+.
T Consensus 77 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (325)
T PF07693_consen 77 FDQLEKHFGSKKIKLYAKKKLKSLKIKFKIKINLSKAIPLALIGLPALILAVAIAKLKAELKNAFKSLEEKFLKKLKKEV 156 (325)
T ss_pred HHHHHHhcCccchhHHHhhhhhhhhceeeeeeecceeehHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhHHH
Confidence 5544211000 0011
Q ss_pred HHHHHHHHHHhc--CCeEEEEEecCCCcChhhHHHHHHhhcC--CCCCcEEEEecccHHHHhhccC--------------
Q 003037 190 NSLLERIYASIA--RKKFLLVLDDVWTEDYNKWETFQRCLKN--GLRGSKILVTTRKMTVAQMMQS-------------- 251 (854)
Q Consensus 190 ~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~~l~~~l~~--~~~gs~ilvTtR~~~v~~~~~~-------------- 251 (854)
++....+.+.+. ++|.++|+||+..-+++....+...+.. ..++..+|+..-.+.+......
T Consensus 157 ~~~~~~~~~~l~~~~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~y 236 (325)
T PF07693_consen 157 EELISKIKKKLKESKKRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREY 236 (325)
T ss_pred HHHHHHHHHhhhcCCceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHH
Confidence 112233344443 5799999999976555444444333332 1267777777766655543221
Q ss_pred -----cceEecCCCCHHHHHHHHHHH
Q 003037 252 -----NDVILIRELSEQACWSLFEQL 272 (854)
Q Consensus 252 -----~~~~~l~~L~~~e~~~l~~~~ 272 (854)
..++.+++.+..+-..+|...
T Consensus 237 LeKiiq~~~~lP~~~~~~~~~~~~~~ 262 (325)
T PF07693_consen 237 LEKIIQVPFSLPPPSPSDLERYLNEL 262 (325)
T ss_pred HHhhcCeEEEeCCCCHHHHHHHHHHH
Confidence 126788888877766666554
No 213
>PRK09183 transposase/IS protein; Provisional
Probab=97.13 E-value=0.0031 Score=64.84 Aligned_cols=101 Identities=20% Similarity=0.203 Sum_probs=52.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCC
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIARK 203 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 203 (854)
...+.|+|++|+|||+||..++...... -..+.+++ ...+...+...... .. +...+.+. ..+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~--G~~v~~~~------~~~l~~~l~~a~~~-----~~---~~~~~~~~-~~~ 164 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRA--GIKVRFTT------AADLLLQLSTAQRQ-----GR---YKTTLQRG-VMA 164 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEe------HHHHHHHHHHHHHC-----Cc---HHHHHHHH-hcC
Confidence 3467799999999999999997642211 12333443 22333333222111 11 11222222 245
Q ss_pred eEEEEEecCCCcChhhHH--HHHHhhcCC-CCCcEEEEeccc
Q 003037 204 KFLLVLDDVWTEDYNKWE--TFQRCLKNG-LRGSKILVTTRK 242 (854)
Q Consensus 204 ~~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~ilvTtR~ 242 (854)
.-++|+||+.......+. .+...+... ..++ +||||..
T Consensus 165 ~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 165 PRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred CCEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 569999999643222232 344444321 2344 8888874
No 214
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.12 E-value=0.00046 Score=72.71 Aligned_cols=50 Identities=18% Similarity=0.258 Sum_probs=42.5
Q ss_pred ccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 98 EVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 98 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
+++|.++.++++++++.....+.....+++.|+|++|+||||||+.+++.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 79999999999999997654322345789999999999999999999884
No 215
>PRK04132 replication factor C small subunit; Provisional
Probab=97.12 E-value=0.015 Score=68.84 Aligned_cols=155 Identities=11% Similarity=0.008 Sum_probs=98.6
Q ss_pred cCCCcHHHHHHHHHhcccccccc-CeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEe
Q 003037 132 MGGIGKTTLAQFAYNNNDVINHF-EKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIARKKFLLVLD 210 (854)
Q Consensus 132 ~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlD 210 (854)
+.|+||||+|..++++.- ...+ ..++-+++++..... .+++++.......+. -..+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l~-g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~--------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALARELF-GENWRHNFLELNASDERGIN-VIREKVKEFARTKPI--------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhhh-cccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc--------------CCCCCEEEEEE
Confidence 789999999999998521 1122 245667777654444 333444333211110 01245799999
Q ss_pred cCCCcChhhHHHHHHhhcCCCCCcEEEEecccHH-HHhh-ccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHH
Q 003037 211 DVWTEDYNKWETFQRCLKNGLRGSKILVTTRKMT-VAQM-MQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEI 288 (854)
Q Consensus 211 dv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~ 288 (854)
+++.-...+...++..+......+++|.+|.+.. +... .+....+.+.+++.++....+...+...+.... .+.
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~----~e~ 713 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT----EEG 713 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC----HHH
Confidence 9987777788888888887666777777666543 3222 233679999999999998888765532211111 345
Q ss_pred HHHHHhhcCCCcHHHHHH
Q 003037 289 GRKIVGKCKGLPLAAKTI 306 (854)
Q Consensus 289 ~~~I~~~~~GlPLai~~~ 306 (854)
...|++.++|-+..+..+
T Consensus 714 L~~Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 714 LQAILYIAEGDMRRAINI 731 (846)
T ss_pred HHHHHHHcCCCHHHHHHH
Confidence 677999999988554433
No 216
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.10 E-value=0.0058 Score=72.08 Aligned_cols=123 Identities=13% Similarity=0.211 Sum_probs=71.6
Q ss_pred CccccchhHHHHHHHHhcccccc---cCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHH
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSE---QQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAK 173 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 173 (854)
..++|.++.++.|...+.....+ .......+.++|+.|+|||++|+.++.. .. ...+.++.++..+..
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~---~~~i~id~se~~~~~---- 528 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERH---- 528 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hC---CCcEEeechhhcccc----
Confidence 35899999999999888743210 0123457899999999999999999874 22 223445544432211
Q ss_pred HHHHHhcCCCCCCccHHHHHHHHHHHhcCC-eEEEEEecCCCcChhhHHHHHHhhcCC
Q 003037 174 AIIEALEGSTPSLGELNSLLERIYASIARK-KFLLVLDDVWTEDYNKWETFQRCLKNG 230 (854)
Q Consensus 174 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~~~l~~~l~~~ 230 (854)
.+.+.++.+.... ..+ ....+.+.++.+ ..+++||++.....+.+..+...+..+
T Consensus 529 ~~~~LiG~~~gyv-g~~-~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G 584 (758)
T PRK11034 529 TVSRLIGAPPGYV-GFD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNG 584 (758)
T ss_pred cHHHHcCCCCCcc-ccc-ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcC
Confidence 1222223221110 000 011222333333 469999999777777788888777643
No 217
>PRK04296 thymidine kinase; Provisional
Probab=97.09 E-value=0.0016 Score=63.67 Aligned_cols=113 Identities=13% Similarity=0.032 Sum_probs=62.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCC--CccHHHHHHHHHHHhcC
Q 003037 125 QVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPS--LGELNSLLERIYASIAR 202 (854)
Q Consensus 125 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~ 202 (854)
.++.|+|..|.||||+|..++.. ...+...++.+. ..++.+.....++..++..... ....+++...+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 47789999999999999887774 322333344342 1112222233445555432211 2234445555544 334
Q ss_pred CeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccHH
Q 003037 203 KKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKMT 244 (854)
Q Consensus 203 k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 244 (854)
+.-+||+|.+..-+.++...+...+. ..|..||+|.++..
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 45589999995432233333444333 35778999998643
No 218
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.04 E-value=0.0043 Score=65.80 Aligned_cols=101 Identities=16% Similarity=0.055 Sum_probs=64.7
Q ss_pred HHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhcccccc-ccCe-eEEEEeCCc-cCHHHHHHHHHHHhcC
Q 003037 105 EKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVIN-HFEK-RIWVCVSDP-FDEFRIAKAIIEALEG 181 (854)
Q Consensus 105 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~f~~-~~wv~~s~~-~~~~~~~~~i~~~l~~ 181 (854)
...++++.+..-. +-..+.|+|.+|+|||||++.+++. +.. +-+. ++|+.+.+. .++.++.+.+...+..
T Consensus 119 ~~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vva 191 (380)
T PRK12608 119 LSMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYA 191 (380)
T ss_pred hhHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEe
Confidence 4456888887543 2345689999999999999998884 322 2233 467777654 4678888888877765
Q ss_pred CCCCCccHHH-----HHHHHHHHh--cCCeEEEEEecC
Q 003037 182 STPSLGELNS-----LLERIYASI--ARKKFLLVLDDV 212 (854)
Q Consensus 182 ~~~~~~~~~~-----~~~~l~~~l--~~k~~LlVlDdv 212 (854)
...+...... ......+++ ++++++||+|++
T Consensus 192 st~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 192 STFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 4322222111 111222222 488999999999
No 219
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.012 Score=64.65 Aligned_cols=98 Identities=18% Similarity=0.256 Sum_probs=62.1
Q ss_pred CCccccchhHHHHHHHHhcccccc------cCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSE------QQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEF 169 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 169 (854)
-.++=|.++.+.++.+++...... +-..++=|.+||++|+|||.||++++++ .. +-++.++..
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAge--l~-----vPf~~isAp---- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGE--LG-----VPFLSISAP---- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhh--cC-----CceEeecch----
Confidence 346788999888888776543321 1345677889999999999999999984 32 334554432
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCC
Q 003037 170 RIAKAIIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVW 213 (854)
Q Consensus 170 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 213 (854)
+|+..+.+. +.+.+.+...+.-..-++++++|++.
T Consensus 258 ----eivSGvSGE-----SEkkiRelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 258 ----EIVSGVSGE-----SEKKIRELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred ----hhhcccCcc-----cHHHHHHHHHHHhccCCeEEEeeccc
Confidence 223333222 22233333334445679999999984
No 220
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.00 E-value=0.00089 Score=61.84 Aligned_cols=108 Identities=15% Similarity=0.126 Sum_probs=65.1
Q ss_pred ccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhcccc-ccccCeeEEEEeCCccCHHHHHHHHHHH
Q 003037 100 RGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDV-INHFEKRIWVCVSDPFDEFRIAKAIIEA 178 (854)
Q Consensus 100 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 178 (854)
||+...++++.+.+..... ...-|.|+|..|+||+++|+.++..... ...|..+ ..... + .++++.
T Consensus 1 vG~S~~~~~l~~~l~~~a~----~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~~-~-----~~~l~~ 67 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCASL-P-----AELLEQ 67 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHCT-C-----HHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhC----CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhhC-c-----HHHHHH
Confidence 6777888888887765543 3445789999999999999999884222 1122110 11110 0 111111
Q ss_pred hcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCC-CCCcEEEEecccH
Q 003037 179 LEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNG-LRGSKILVTTRKM 243 (854)
Q Consensus 179 l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~ 243 (854)
.+.-.|+|+|+..-+......+...+... ....|+|.||+..
T Consensus 68 -----------------------a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 68 -----------------------AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp -----------------------CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred -----------------------cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 24456889999776666777777777643 5678999999853
No 221
>PRK07261 topology modulation protein; Provisional
Probab=96.99 E-value=0.002 Score=61.80 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHHhc
Q 003037 126 VISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.|.|+|++|+||||||+.+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999998864
No 222
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.96 E-value=0.012 Score=62.78 Aligned_cols=114 Identities=11% Similarity=0.074 Sum_probs=61.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCcc-CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPF-DEFRIAKAIIEALEGSTPSLGELNSLLERIYASIA 201 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 201 (854)
+.++|+|+|++|+||||++..++.. ....-..+..++..... ...+-++..++.++.+.....+...+...+...-.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~--L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH--HHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 4589999999999999999988864 22222244455544321 22333444444554442223345555555544322
Q ss_pred C-CeEEEEEecCCCc--ChhhHHHHHHhhcCCCCCcEEEE
Q 003037 202 R-KKFLLVLDDVWTE--DYNKWETFQRCLKNGLRGSKILV 238 (854)
Q Consensus 202 ~-k~~LlVlDdv~~~--~~~~~~~l~~~l~~~~~gs~ilv 238 (854)
. +.=++++|-.-.. +....+.+...+....+...++|
T Consensus 318 ~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLV 357 (436)
T PRK11889 318 EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLT 357 (436)
T ss_pred ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEE
Confidence 1 3457888876432 23345556555543333333444
No 223
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.95 E-value=0.0028 Score=63.37 Aligned_cols=49 Identities=16% Similarity=0.229 Sum_probs=37.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHH
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAK 173 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 173 (854)
..-+++.|+|.+|+|||++|.+++.. ....-..++|++... ++...+.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 45789999999999999999888764 333446889999876 55554443
No 224
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.95 E-value=9.7e-05 Score=64.88 Aligned_cols=99 Identities=16% Similarity=0.183 Sum_probs=75.3
Q ss_pred ceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccccccccccc-CCCceeeecCCCCcccchhhhcC
Q 003037 483 LRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKL-IHLRFLKLVWLDIEELPETCCEL 561 (854)
Q Consensus 483 Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L-~~L~~L~L~~~~i~~lP~~i~~L 561 (854)
+..+.++.|....+.. .+..+.+...|...+|++|. +.++|..+... +.+..|+|++|.|..+|..+..+
T Consensus 29 ~h~ldLssc~lm~i~d-avy~l~~~~el~~i~ls~N~--------fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam 99 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIAD-AVYMLSKGYELTKISLSDNG--------FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAM 99 (177)
T ss_pred hhhcccccchhhHHHH-HHHHHhCCceEEEEecccch--------hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhh
Confidence 3444555554211111 23446777888889999998 88888877644 58899999999999999999999
Q ss_pred CCCcEEeecCcccccccccccccCCCCccc
Q 003037 562 FNVQTLEVLDCRSFRRLPQGFGKLVNLRNL 591 (854)
Q Consensus 562 ~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L 591 (854)
+.|+.|+++.|. +...|.-|..|.+|-.|
T Consensus 100 ~aLr~lNl~~N~-l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 100 PALRSLNLRFNP-LNAEPRVIAPLIKLDML 128 (177)
T ss_pred HHhhhcccccCc-cccchHHHHHHHhHHHh
Confidence 999999999998 88888888777777766
No 225
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.0065 Score=68.34 Aligned_cols=166 Identities=15% Similarity=0.199 Sum_probs=93.6
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAI 175 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 175 (854)
+.+.+|.++..++|++.|.-..-...-+-+++++||++|+|||.|++.+++- ....| +-++++.-.|..++
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~a--l~Rkf---vR~sLGGvrDEAEI---- 392 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKA--LGRKF---VRISLGGVRDEAEI---- 392 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHH--hCCCE---EEEecCccccHHHh----
Confidence 4568999999999999886432211335589999999999999999999983 55555 34455554444333
Q ss_pred HHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcCh----hhHHHHHHhhcCC------------C-CCcE-EE
Q 003037 176 IEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTEDY----NKWETFQRCLKNG------------L-RGSK-IL 237 (854)
Q Consensus 176 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~l~~~l~~~------------~-~gs~-il 237 (854)
+--......... ..+.+.+.+ .+.++=+++||.+..... +--.+++..|... . -=|. +-
T Consensus 393 -RGHRRTYIGamP-GrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmF 469 (782)
T COG0466 393 -RGHRRTYIGAMP-GKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMF 469 (782)
T ss_pred -ccccccccccCC-hHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEE
Confidence 111111111111 122222222 245677999999843110 1112233333211 1 1133 34
Q ss_pred EecccH-H-HHh-hccCcceEecCCCCHHHHHHHHHHHh
Q 003037 238 VTTRKM-T-VAQ-MMQSNDVILIRELSEQACWSLFEQLA 273 (854)
Q Consensus 238 vTtR~~-~-v~~-~~~~~~~~~l~~L~~~e~~~l~~~~~ 273 (854)
|||-|. + +.. .+..-.++++.+-+++|-.++-+++.
T Consensus 470 iaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 470 IATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 555432 1 211 22335689999999999888877765
No 226
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.94 E-value=0.014 Score=62.06 Aligned_cols=71 Identities=6% Similarity=0.067 Sum_probs=49.3
Q ss_pred CCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccHH-HHhh-ccCcceEecCCCCHHHHHHHHHHH
Q 003037 202 RKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKMT-VAQM-MQSNDVILIRELSEQACWSLFEQL 272 (854)
Q Consensus 202 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~-~~~~~~~~l~~L~~~e~~~l~~~~ 272 (854)
+++-++|+|++..-+......+...+.....+..+|++|.+.. +... .+....+.+.+++.+++.+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 4444566788877666677777777776555676777777654 3322 233568899999999999888653
No 227
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.94 E-value=0.029 Score=60.19 Aligned_cols=211 Identities=12% Similarity=0.122 Sum_probs=121.5
Q ss_pred chhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHH-HHHHhccccccccCeeEEEEeCCc---cCHHHHHHHHHH
Q 003037 102 RDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLA-QFAYNNNDVINHFEKRIWVCVSDP---FDEFRIAKAIIE 177 (854)
Q Consensus 102 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~~~wv~~s~~---~~~~~~~~~i~~ 177 (854)
|.+.+++|..||... ....|.|.|+-|+||+.|+ .++..+.+. +..+++.+- .+-..++..++.
T Consensus 1 R~e~~~~L~~wL~e~------~~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNEN------PNTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcC------CCeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHH
Confidence 678899999999854 3568999999999999999 777764222 444443221 123334444444
Q ss_pred Hhc-----------------------CCCCC-CccHH-HHH-------HHHHH-------------------Hhc---CC
Q 003037 178 ALE-----------------------GSTPS-LGELN-SLL-------ERIYA-------------------SIA---RK 203 (854)
Q Consensus 178 ~l~-----------------------~~~~~-~~~~~-~~~-------~~l~~-------------------~l~---~k 203 (854)
++| ++... ..+.+ ++. ..|++ +|. .+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 442 21111 01111 111 11111 111 12
Q ss_pred eEEEEEecCCCcC---hhhHHHHHH---hhcCCCCCcEEEEecccHHHHhhc------cCcceEecCCCCHHHHHHHHHH
Q 003037 204 KFLLVLDDVWTED---YNKWETFQR---CLKNGLRGSKILVTTRKMTVAQMM------QSNDVILIRELSEQACWSLFEQ 271 (854)
Q Consensus 204 ~~LlVlDdv~~~~---~~~~~~l~~---~l~~~~~gs~ilvTtR~~~v~~~~------~~~~~~~l~~L~~~e~~~l~~~ 271 (854)
+=+||+||.-... ...|+.+.. .+-. .+-.+||++|-+......+ .....+.|.-.+.+.|..+...
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~ 227 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLS 227 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHH
Confidence 5689999984421 112222221 2222 2445788888775544432 2245788999999999999988
Q ss_pred HhcCCCCC------------CC----chHHHHHHHHHHhhcCCCcHHHHHHHhhhccCCCHH-HHHHHHhh
Q 003037 272 LAFFGRPR------------SE----CEQLIEIGRKIVGKCKGLPLAAKTIGSLLRFKRSSR-EWQSILDS 325 (854)
Q Consensus 272 ~~~~~~~~------------~~----~~~~~~~~~~I~~~~~GlPLai~~~~~~l~~~~~~~-~w~~~~~~ 325 (854)
+....... .. ......-....++..||==.-+..+++.++...+++ .-+++.++
T Consensus 228 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~q 298 (431)
T PF10443_consen 228 QLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIISQ 298 (431)
T ss_pred HhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 76432110 00 012333345577889999999999999998877653 44555444
No 228
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.94 E-value=0.006 Score=73.09 Aligned_cols=182 Identities=17% Similarity=0.155 Sum_probs=93.5
Q ss_pred CCccccchhHHHHHHHHhcccccc-------cCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSE-------QQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDE 168 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 168 (854)
-+++.|.++.+++|.+.+...-.. +-...+-+.|+|++|+|||+||+.+++. ....| +.++..
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~-----i~i~~~--- 246 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF-----ISINGP--- 246 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE-----EEEecH---
Confidence 345889999999988876422100 0123466889999999999999999984 22222 222211
Q ss_pred HHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcC-----------hhhHHHHHHhhcCC-CCCcEE
Q 003037 169 FRIAKAIIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTED-----------YNKWETFQRCLKNG-LRGSKI 236 (854)
Q Consensus 169 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------~~~~~~l~~~l~~~-~~gs~i 236 (854)
.+. ... .......+...+.......+.+|+||++..-. ......+...+... ..+..+
T Consensus 247 -~i~----~~~-----~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vi 316 (733)
T TIGR01243 247 -EIM----SKY-----YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVI 316 (733)
T ss_pred -HHh----ccc-----ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEE
Confidence 111 000 00111222233333334567899999973210 11223344444322 223334
Q ss_pred EE-ecccHH-HHhhcc----CcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHH
Q 003037 237 LV-TTRKMT-VAQMMQ----SNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLA 302 (854)
Q Consensus 237 lv-TtR~~~-v~~~~~----~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLa 302 (854)
+| ||.... +...+. -...+.+...+.++-.+++....-. ....... ....+++.+.|.--+
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~-~~l~~d~----~l~~la~~t~G~~ga 383 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRN-MPLAEDV----DLDKLAEVTHGFVGA 383 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC-CCCcccc----CHHHHHHhCCCCCHH
Confidence 44 444332 211111 1346778878888888888754421 1111111 234567777776533
No 229
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.94 E-value=0.0028 Score=60.34 Aligned_cols=132 Identities=18% Similarity=0.166 Sum_probs=68.3
Q ss_pred cccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHH
Q 003037 99 VRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEA 178 (854)
Q Consensus 99 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 178 (854)
+||.+..+.++.+.+..... .. .-|.|+|..|+||+.+|+.+.+.... .-..-+-|+++. .+.+.+-..+.-.
T Consensus 1 liG~s~~m~~~~~~~~~~a~---~~-~pVlI~GE~GtGK~~lA~~IH~~s~r--~~~pfi~vnc~~-~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS---SD-LPVLITGETGTGKELLARAIHNNSPR--KNGPFISVNCAA-LPEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT---ST-S-EEEECSTTSSHHHHHHHHHHCSTT--TTS-EEEEETTT-S-HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhC---CC-CCEEEEcCCCCcHHHHHHHHHHhhhc--ccCCeEEEehhh-hhcchhhhhhhcc
Confidence 47888888888888776553 13 34669999999999999999984221 111223344443 2333322222211
Q ss_pred hcCCCCCC-ccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCC------C-----CCcEEEEecccH
Q 003037 179 LEGSTPSL-GELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNG------L-----RGSKILVTTRKM 243 (854)
Q Consensus 179 l~~~~~~~-~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~------~-----~gs~ilvTtR~~ 243 (854)
........ ..... .+.+ ...=.|+||++..-....-..+...+..+ . ...|||.||...
T Consensus 74 ~~~~~~~~~~~~~G---~l~~---A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 74 EKGAFTGARSDKKG---LLEQ---ANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp CSSSSTTTSSEBEH---HHHH---TTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred ccccccccccccCC---ceee---ccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 11110010 11011 1111 22336889999766655666676666532 1 256888888743
No 230
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.94 E-value=0.0039 Score=60.34 Aligned_cols=37 Identities=30% Similarity=0.464 Sum_probs=28.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEE
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVC 161 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 161 (854)
...+|.|.|+.|+||||+|+.+++. ....+...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~--l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYER--LKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEEe
Confidence 5669999999999999999999984 444555555553
No 231
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.91 E-value=0.0018 Score=68.71 Aligned_cols=102 Identities=21% Similarity=0.307 Sum_probs=55.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCe
Q 003037 125 QVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIARKK 204 (854)
Q Consensus 125 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 204 (854)
..+.++|..|+|||.||.++++. ....-..++++++.. ++..+...-... ..+... . .+.+. .-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~~~------l~~~l~~~~~~~---~~~~~~---~-~~~l~-~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTADE------LIEILREIRFNN---DKELEE---V-YDLLI-NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEHHH------HHHHHHHHHhcc---chhHHH---H-HHHhc-cC
Confidence 56899999999999999999985 322223566665433 333332211111 011111 1 22222 23
Q ss_pred EEEEEecCCCcChhhH--HHHHHhhcCC-CCCcEEEEeccc
Q 003037 205 FLLVLDDVWTEDYNKW--ETFQRCLKNG-LRGSKILVTTRK 242 (854)
Q Consensus 205 ~LlVlDdv~~~~~~~~--~~l~~~l~~~-~~gs~ilvTtR~ 242 (854)
=||||||+.......| +.+...+... ..+-.+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 4899999955433334 3344444322 234468888873
No 232
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=0.00062 Score=67.79 Aligned_cols=87 Identities=22% Similarity=0.213 Sum_probs=65.5
Q ss_pred cCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccccCCCceeeecCCCC--cccch
Q 003037 479 SAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDI--EELPE 556 (854)
Q Consensus 479 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i--~~lP~ 556 (854)
.++.++.|++-+|..+.... +-..+.+|+.|++|+|++|... +.|..+| -.+.+|+.|-|.++.+ +.+-.
T Consensus 69 ~~~~v~elDL~~N~iSdWse-I~~ile~lP~l~~LNls~N~L~----s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s 140 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSE-IGAILEQLPALTTLNLSCNSLS----SDIKSLP---LPLKNLRVLVLNGTGLSWTQSTS 140 (418)
T ss_pred HhhhhhhhhcccchhccHHH-HHHHHhcCccceEeeccCCcCC----CccccCc---ccccceEEEEEcCCCCChhhhhh
Confidence 56789999999998555444 4556789999999999999821 1133444 3567999999999884 46777
Q ss_pred hhhcCCCCcEEeecCcc
Q 003037 557 TCCELFNVQTLEVLDCR 573 (854)
Q Consensus 557 ~i~~L~~L~~L~l~~~~ 573 (854)
++..++.++.|.++.|.
T Consensus 141 ~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 141 SLDDLPKVTELHMSDNS 157 (418)
T ss_pred hhhcchhhhhhhhccch
Confidence 78888888999888775
No 233
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.89 E-value=0.011 Score=58.03 Aligned_cols=159 Identities=16% Similarity=0.175 Sum_probs=89.1
Q ss_pred cCCccccchhHHH---HHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHH
Q 003037 95 DVSEVRGRDEEKN---TLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRI 171 (854)
Q Consensus 95 ~~~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~ 171 (854)
.-+++||.++... -|++.|..+..=+...++-|..+|++|.|||.+|+++++..+ -.| +.+..
T Consensus 119 t~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k--vp~-----l~vka------- 184 (368)
T COG1223 119 TLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK--VPL-----LLVKA------- 184 (368)
T ss_pred cHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC--Cce-----EEech-------
Confidence 3456899987764 355666554322245688899999999999999999999533 222 22211
Q ss_pred HHHHHHHhcCCCCCCccHHHHHHHHHHHh-cCCeEEEEEecCCCcC------------hhhHHHHHHhhc--CCCCCcEE
Q 003037 172 AKAIIEALEGSTPSLGELNSLLERIYASI-ARKKFLLVLDDVWTED------------YNKWETFQRCLK--NGLRGSKI 236 (854)
Q Consensus 172 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~------------~~~~~~l~~~l~--~~~~gs~i 236 (854)
.+-|-+.++ +....+..+.+.. +.-++++.+|.+.-.. .+.-..++..+. ..+.|...
T Consensus 185 t~liGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvt 257 (368)
T COG1223 185 TELIGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVT 257 (368)
T ss_pred HHHHHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEE
Confidence 111222221 2222233333332 3568999999873210 112223333333 23456666
Q ss_pred EEecccHHHHhh-ccC--cceEecCCCCHHHHHHHHHHHhc
Q 003037 237 LVTTRKMTVAQM-MQS--NDVILIRELSEQACWSLFEQLAF 274 (854)
Q Consensus 237 lvTtR~~~v~~~-~~~--~~~~~l~~L~~~e~~~l~~~~~~ 274 (854)
|-.|.+.+.... +.. ...++...-+++|-.+++..++-
T Consensus 258 IaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k 298 (368)
T COG1223 258 IAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAK 298 (368)
T ss_pred EeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHH
Confidence 666666554433 111 34566666678888888887763
No 234
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.89 E-value=0.0045 Score=62.67 Aligned_cols=47 Identities=17% Similarity=0.178 Sum_probs=35.4
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHH
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRI 171 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~ 171 (854)
..-.++.|+|.+|+|||++|.+++.. ....-..++|++.. .++.+.+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH
Confidence 35789999999999999999888764 32334678899887 5555443
No 235
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.036 Score=60.01 Aligned_cols=151 Identities=21% Similarity=0.204 Sum_probs=86.2
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhc
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIA 201 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 201 (854)
.....+.+.|++|+|||+||..++.. ..|+.+--++-.+- ++-. .......+.....+.-+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiSpe~m-------------iG~s--EsaKc~~i~k~F~DAYk 596 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIISPEDM-------------IGLS--ESAKCAHIKKIFEDAYK 596 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeChHHc-------------cCcc--HHHHHHHHHHHHHHhhc
Confidence 46778889999999999999999873 45754433321110 1110 00111122233334445
Q ss_pred CCeEEEEEecCCCc-C---------hhhHHHHHHhhcCC-CCCcE--EEEecccHHHHhhccC----cceEecCCCCH-H
Q 003037 202 RKKFLLVLDDVWTE-D---------YNKWETFQRCLKNG-LRGSK--ILVTTRKMTVAQMMQS----NDVILIRELSE-Q 263 (854)
Q Consensus 202 ~k~~LlVlDdv~~~-~---------~~~~~~l~~~l~~~-~~gs~--ilvTtR~~~v~~~~~~----~~~~~l~~L~~-~ 263 (854)
..--.||+||+..- + -.....+...+... .+|-| |+-||....+...++- ...+.++.++. +
T Consensus 597 S~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~ 676 (744)
T KOG0741|consen 597 SPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGE 676 (744)
T ss_pred CcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchH
Confidence 66779999998431 0 01223344444332 24444 4446666777777654 35888999887 7
Q ss_pred HHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhc
Q 003037 264 ACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKC 296 (854)
Q Consensus 264 e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~ 296 (854)
+..+.++..-. -.+.+.+.++++...+|
T Consensus 677 ~~~~vl~~~n~-----fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 677 QLLEVLEELNI-----FSDDEVRAIAEQLLSKK 704 (744)
T ss_pred HHHHHHHHccC-----CCcchhHHHHHHHhccc
Confidence 78888776431 22344556666666666
No 236
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.88 E-value=0.0068 Score=58.91 Aligned_cols=122 Identities=24% Similarity=0.328 Sum_probs=72.3
Q ss_pred ccCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHH
Q 003037 94 IDVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAK 173 (854)
Q Consensus 94 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 173 (854)
++-..++|.|...+.|++--..-.. +....-|.+||.-|+|||.|++++.+. +....-. -|-|...
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~--G~pANnVLLwGaRGtGKSSLVKA~~~e--~~~~glr--LVEV~k~-------- 122 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAE--GLPANNVLLWGARGTGKSSLVKALLNE--YADEGLR--LVEVDKE-------- 122 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHc--CCcccceEEecCCCCChHHHHHHHHHH--HHhcCCe--EEEEcHH--------
Confidence 3445689999999888764332111 224456889999999999999999884 4333322 2333321
Q ss_pred HHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCC-cChhhHHHHHHhhcCC---CCCcEEEEeccc
Q 003037 174 AIIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWT-EDYNKWETFQRCLKNG---LRGSKILVTTRK 242 (854)
Q Consensus 174 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~---~~gs~ilvTtR~ 242 (854)
+..++..+.+.|+. ...||+|..||+.- ++...+..+...+.-+ .+...++..|.+
T Consensus 123 -----------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 123 -----------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred -----------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 11122222222222 36799999999843 3346777788877643 233344444544
No 237
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.0045 Score=71.59 Aligned_cols=153 Identities=22% Similarity=0.269 Sum_probs=88.4
Q ss_pred CccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccc-ccc-----CeeEEEEeCCccCHHH
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVI-NHF-----EKRIWVCVSDPFDEFR 170 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f-----~~~~wv~~s~~~~~~~ 170 (854)
+.++||++|++++++.|..... +.+ .++|.+|+|||++|.-++.. +. +.- +..++.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K----NNP--vLiGEpGVGKTAIvEGLA~r--Iv~g~VP~~L~~~~i~s---------- 231 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK----NNP--VLVGEPGVGKTAIVEGLAQR--IVNGDVPESLKDKRIYS---------- 231 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC----CCC--eEecCCCCCHHHHHHHHHHH--HhcCCCCHHHcCCEEEE----------
Confidence 4589999999999999986543 222 46899999999999766652 21 111 111111
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHhc-CCeEEEEEecCCCc-------C-hhhHHH-HHHhhcCCCCCcEEEEec
Q 003037 171 IAKAIIEALEGSTPSLGELNSLLERIYASIA-RKKFLLVLDDVWTE-------D-YNKWET-FQRCLKNGLRGSKILVTT 240 (854)
Q Consensus 171 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~-------~-~~~~~~-l~~~l~~~~~gs~ilvTt 240 (854)
-++...+.+. .-..+.++....+.+.++ ..+..|++|.++.- . .-+-.. +...+..+ .--.|-.||
T Consensus 232 --LD~g~LvAGa-kyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARG-eL~~IGATT 307 (786)
T COG0542 232 --LDLGSLVAGA-KYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG-ELRCIGATT 307 (786)
T ss_pred --ecHHHHhccc-cccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcC-CeEEEEecc
Confidence 1122222222 223456666666665554 44899999998651 0 011222 33334333 222355566
Q ss_pred ccHHHHhh------ccCcceEecCCCCHHHHHHHHHH
Q 003037 241 RKMTVAQM------MQSNDVILIRELSEQACWSLFEQ 271 (854)
Q Consensus 241 R~~~v~~~------~~~~~~~~l~~L~~~e~~~l~~~ 271 (854)
-++.--.. ....+.+.+..-+.+++..++.-
T Consensus 308 ~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrG 344 (786)
T COG0542 308 LDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRG 344 (786)
T ss_pred HHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHH
Confidence 54432111 12356889999999999998854
No 238
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.85 E-value=0.006 Score=68.44 Aligned_cols=90 Identities=19% Similarity=0.228 Sum_probs=64.0
Q ss_pred CCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHh
Q 003037 121 QNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASI 200 (854)
Q Consensus 121 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 200 (854)
.+..+++.++|++|+||||||.-+++. ..| .++=|++|+.-+...+-..|...+.......+
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkq----aGY-sVvEINASDeRt~~~v~~kI~~avq~~s~l~a------------- 384 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQ----AGY-SVVEINASDERTAPMVKEKIENAVQNHSVLDA------------- 384 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHh----cCc-eEEEecccccccHHHHHHHHHHHHhhcccccc-------------
Confidence 456799999999999999999999873 223 57788899988888887777776654432211
Q ss_pred cCCeEEEEEecCCCcChhhHHHHHHhhc
Q 003037 201 ARKKFLLVLDDVWTEDYNKWETFQRCLK 228 (854)
Q Consensus 201 ~~k~~LlVlDdv~~~~~~~~~~l~~~l~ 228 (854)
.+++.-||+|.+.-......+.+...+.
T Consensus 385 dsrP~CLViDEIDGa~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDGAPRAAVDVILSLVK 412 (877)
T ss_pred CCCcceEEEecccCCcHHHHHHHHHHHH
Confidence 2788899999985433333444555443
No 239
>PHA00729 NTP-binding motif containing protein
Probab=96.82 E-value=0.0073 Score=59.63 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
+...|.|+|.+|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4557889999999999999999874
No 240
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.78 E-value=0.0077 Score=61.01 Aligned_cols=88 Identities=17% Similarity=0.093 Sum_probs=53.8
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhcccccccc------CeeEEEEeCCccCHHHHHHHHHHHhcCCC---------CCC
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNNNDVINHF------EKRIWVCVSDPFDEFRIAKAIIEALEGST---------PSL 186 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f------~~~~wv~~s~~~~~~~~~~~i~~~l~~~~---------~~~ 186 (854)
..-.++.|+|.+|+|||+||.+++... ...- ..++|++....++...+. ++.+...... ...
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeC
Confidence 357799999999999999998887632 1222 567899988777665443 3333322110 111
Q ss_pred ccHHHHHHHHHHHhc----CCeEEEEEecC
Q 003037 187 GELNSLLERIYASIA----RKKFLLVLDDV 212 (854)
Q Consensus 187 ~~~~~~~~~l~~~l~----~k~~LlVlDdv 212 (854)
.+.+++...+.+... .+.-++|+|.+
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsi 123 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSV 123 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCc
Confidence 344455554444432 34558888887
No 241
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.76 E-value=0.01 Score=56.46 Aligned_cols=149 Identities=14% Similarity=0.238 Sum_probs=77.8
Q ss_pred EEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcC--Ce
Q 003037 127 ISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIAR--KK 204 (854)
Q Consensus 127 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~--k~ 204 (854)
+.|.|.+|+|||++|.++... ....++++.....++.+ ..+.|.+........-... +....+.+.+.. +.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~-E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTI-ETPRDLVSALKELDPG 74 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEe-ecHHHHHHHHHhcCCC
Confidence 679999999999999988763 22356677666666543 4444433222221111111 112223333321 23
Q ss_pred EEEEEecC--CC-----cC--------hhhHHHHHHhhcCCCCCcEEEEecccHHHHhhccCcceEecCCCCHHHHHHHH
Q 003037 205 FLLVLDDV--WT-----ED--------YNKWETFQRCLKNGLRGSKILVTTRKMTVAQMMQSNDVILIRELSEQACWSLF 269 (854)
Q Consensus 205 ~LlVlDdv--~~-----~~--------~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l~~L~~~e~~~l~ 269 (854)
-.+++|.+ |- .+ ...+..+...+.. .+..+|++|. +| -....+.+.....|
T Consensus 75 ~~VLIDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~--~~~~~viVsn--Ev----------G~g~vp~~~~~r~f 140 (169)
T cd00544 75 DVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRN--KPGTLILVSN--EV----------GLGVVPENALGRRF 140 (169)
T ss_pred CEEEEEcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHc--CCCcEEEEEC--Cc----------CCCCCCCCHHHHHH
Confidence 47999986 11 10 0122223333333 4555677764 22 22334455666666
Q ss_pred HHHhcCCCCCCCchHHHHHHHHHHhhcCCCcH
Q 003037 270 EQLAFFGRPRSECEQLIEIGRKIVGKCKGLPL 301 (854)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPL 301 (854)
..... .-.+.+...|.+++.-..|+|+
T Consensus 141 ~d~lG-----~lnq~la~~ad~v~~vv~Gip~ 167 (169)
T cd00544 141 RDELG-----RLNQRLAALADEVYLVVSGIPL 167 (169)
T ss_pred HHHHH-----HHHHHHHHHCCEEEEEECCcce
Confidence 66543 2344555566666666678875
No 242
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.76 E-value=0.00079 Score=62.33 Aligned_cols=89 Identities=26% Similarity=0.256 Sum_probs=49.4
Q ss_pred EEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEE
Q 003037 127 ISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIARKKFL 206 (854)
Q Consensus 127 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~L 206 (854)
|.|+|.+|+|||+||+.++.. .. ....-+.++...+..+++...--. ... ....+ ..+...+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~---~~~~~i~~~~~~~~~dl~g~~~~~-~~~-~~~~~-~~l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LG---RPVIRINCSSDTTEEDLIGSYDPS-NGQ-FEFKD-GPLVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HT---CEEEEEE-TTTSTHHHHHCEEET--TTT-TCEEE--CCCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHH--hh---cceEEEEeccccccccceeeeeec-ccc-ccccc-ccccccc-----cceeE
Confidence 679999999999999999983 21 123345677777776654332211 010 00000 0000000 17899
Q ss_pred EEEecCCCcChhhHHHHHHhhc
Q 003037 207 LVLDDVWTEDYNKWETFQRCLK 228 (854)
Q Consensus 207 lVlDdv~~~~~~~~~~l~~~l~ 228 (854)
+|||++.......+..+...+.
T Consensus 69 l~lDEin~a~~~v~~~L~~ll~ 90 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLLE 90 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHHS
T ss_pred EEECCcccCCHHHHHHHHHHHh
Confidence 9999996545555556666554
No 243
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.76 E-value=0.0077 Score=61.83 Aligned_cols=56 Identities=23% Similarity=0.267 Sum_probs=40.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccc----cccCeeEEEEeCCccCHHHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVI----NHFEKRIWVCVSDPFDEFRIAKAIIEAL 179 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~s~~~~~~~~~~~i~~~l 179 (854)
.-.+.=|+|.+|+|||+|+.+++-...+. +.=..++|++....|+.+++. +|++..
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~ 96 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERF 96 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHT
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcc
Confidence 45689999999999999997776432222 122468899999988887764 566654
No 244
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.74 E-value=0.0012 Score=77.10 Aligned_cols=84 Identities=24% Similarity=0.351 Sum_probs=59.2
Q ss_pred cCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccccCCCceeeecCCCCcccc--h
Q 003037 479 SAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIEELP--E 556 (854)
Q Consensus 479 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~~lP--~ 556 (854)
.++.||+|.+.+-... ...+-....++++|+.||+++++ +..+ ..|++|++|+.|.+++-.+..-+ .
T Consensus 146 ~LPsL~sL~i~~~~~~--~~dF~~lc~sFpNL~sLDIS~Tn--------I~nl-~GIS~LknLq~L~mrnLe~e~~~~l~ 214 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFD--NDDFSQLCASFPNLRSLDISGTN--------ISNL-SGISRLKNLQVLSMRNLEFESYQDLI 214 (699)
T ss_pred hCcccceEEecCceec--chhHHHHhhccCccceeecCCCC--------ccCc-HHHhccccHHHHhccCCCCCchhhHH
Confidence 4677888887775421 11133445778888888888888 7777 67888888888888877666433 3
Q ss_pred hhhcCCCCcEEeecCcc
Q 003037 557 TCCELFNVQTLEVLDCR 573 (854)
Q Consensus 557 ~i~~L~~L~~L~l~~~~ 573 (854)
.+.+|++|++||++...
T Consensus 215 ~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 215 DLFNLKKLRVLDISRDK 231 (699)
T ss_pred HHhcccCCCeeeccccc
Confidence 56778888888888755
No 245
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.74 E-value=0.0096 Score=60.75 Aligned_cols=56 Identities=20% Similarity=0.201 Sum_probs=38.9
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhccccccc----cCeeEEEEeCCccCHHHHHHHHHHH
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNNNDVINH----FEKRIWVCVSDPFDEFRIAKAIIEA 178 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~s~~~~~~~~~~~i~~~ 178 (854)
..-.++.|+|.+|+|||+||.+++-....... -..++|++....++..++ .++++.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~ 76 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAER 76 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHH
Confidence 35689999999999999999888753222221 358899998887765443 334443
No 246
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.73 E-value=0.023 Score=55.14 Aligned_cols=120 Identities=17% Similarity=0.208 Sum_probs=66.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEE---eCCccCHHHHH------HHHHHHhcCCC------CCCc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVC---VSDPFDEFRIA------KAIIEALEGST------PSLG 187 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~---~s~~~~~~~~~------~~i~~~l~~~~------~~~~ 187 (854)
.-.+++|+|..|.|||||++.++.. .....+.+++. +.. .+..... .++++.++... ....
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~---~~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGL---LKPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC---CCCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 4468999999999999999999873 22334444442 221 1222211 12344443221 1111
Q ss_pred cHHHHHHHHHHHhcCCeEEEEEecCCC-cChhhHHHHHHhhcCCC-C-CcEEEEecccHHHH
Q 003037 188 ELNSLLERIYASIARKKFLLVLDDVWT-EDYNKWETFQRCLKNGL-R-GSKILVTTRKMTVA 246 (854)
Q Consensus 188 ~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~-~-gs~ilvTtR~~~v~ 246 (854)
.-+.-.-.+.+.+...+-++++|+--. -+....+.+...+.... . +..||++|.+....
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 222233345566777888999998643 23344444555444321 2 56788888776544
No 247
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.72 E-value=0.0089 Score=56.87 Aligned_cols=40 Identities=30% Similarity=0.360 Sum_probs=29.6
Q ss_pred EEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccC
Q 003037 126 VISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFD 167 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 167 (854)
++.|+|.+|+||||+|..+... ....-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcchH
Confidence 3689999999999999999874 222335677887765543
No 248
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.72 E-value=0.018 Score=64.59 Aligned_cols=160 Identities=17% Similarity=0.177 Sum_probs=81.5
Q ss_pred CCccccchhHHHHHHHHhcc---c-ccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLC---E-SSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRI 171 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~---~-~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~ 171 (854)
-+++.|.+..++.+...... . ...+-..++-|.++|++|+|||.+|+.+++. ....| +-+..+.
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~~------- 294 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVGK------- 294 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhHH-------
Confidence 34677877666655542211 0 0000234567889999999999999999984 22222 1122111
Q ss_pred HHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCc--------Chhh----HHHHHHhhcCCCCCcEEEEe
Q 003037 172 AKAIIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTE--------DYNK----WETFQRCLKNGLRGSKILVT 239 (854)
Q Consensus 172 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--------~~~~----~~~l~~~l~~~~~gs~ilvT 239 (854)
+.. .... .+...+...+...-...+++|++|++..- +... ...+...+.....+.-||.|
T Consensus 295 ---l~~----~~vG-ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaT 366 (489)
T CHL00195 295 ---LFG----GIVG-ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVAT 366 (489)
T ss_pred ---hcc----cccC-hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 110 0000 01111222222222357899999998421 1011 11233333333344445666
Q ss_pred cccHHH-Hhhc----cCcceEecCCCCHHHHHHHHHHHhcC
Q 003037 240 TRKMTV-AQMM----QSNDVILIRELSEQACWSLFEQLAFF 275 (854)
Q Consensus 240 tR~~~v-~~~~----~~~~~~~l~~L~~~e~~~l~~~~~~~ 275 (854)
|.+... ...+ .-+..+.+..-+.++-.++|..+...
T Consensus 367 TN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 367 ANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred cCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 654432 2111 12456778888888888888877643
No 249
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.71 E-value=0.0079 Score=60.54 Aligned_cols=44 Identities=18% Similarity=0.116 Sum_probs=32.7
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccC
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFD 167 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 167 (854)
..-.++.|+|.+|+||||+|.+++.. ....-..++|++....+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 35789999999999999999888764 223334677887665543
No 250
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.71 E-value=0.0092 Score=61.08 Aligned_cols=81 Identities=23% Similarity=0.352 Sum_probs=49.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCC
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIARK 203 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 203 (854)
..-+.++|.+|+|||.||.++.++ ....--.+.++++. +++.++....... .....+.+.+ .+
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~~~~------el~~~Lk~~~~~~--------~~~~~l~~~l-~~ 167 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFITAP------DLLSKLKAAFDEG--------RLEEKLLREL-KK 167 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEEHH------HHHHHHHHHHhcC--------chHHHHHHHh-hc
Confidence 445889999999999999999996 33332356666543 4555555544321 1122233322 23
Q ss_pred eEEEEEecCCCcChhhHH
Q 003037 204 KFLLVLDDVWTEDYNKWE 221 (854)
Q Consensus 204 ~~LlVlDdv~~~~~~~~~ 221 (854)
-=||||||+-......|.
T Consensus 168 ~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 168 VDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred CCEEEEecccCccCCHHH
Confidence 348999999654444554
No 251
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.70 E-value=0.02 Score=53.12 Aligned_cols=106 Identities=18% Similarity=0.150 Sum_probs=59.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcC
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIAR 202 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 202 (854)
.-.+++|+|..|.|||||++.+.... ....+.+|+.-.. .+.-- .+....+.-.-.+.+.+..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~~-------------~i~~~-~~lS~G~~~rv~laral~~ 87 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGSTV-------------KIGYF-EQLSGGEKMRLALAKLLLE 87 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCeE-------------EEEEE-ccCCHHHHHHHHHHHHHhc
Confidence 44689999999999999999998742 2233444432100 00000 0011122223334566667
Q ss_pred CeEEEEEecCCC-cChhhHHHHHHhhcCCCCCcEEEEecccHHHHh
Q 003037 203 KKFLLVLDDVWT-EDYNKWETFQRCLKNGLRGSKILVTTRKMTVAQ 247 (854)
Q Consensus 203 k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 247 (854)
++-++++|+.-. -+....+.+...+... +..||++|.+.....
T Consensus 88 ~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 788999998643 2344555555555443 245777777665443
No 252
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.65 E-value=0.0015 Score=58.77 Aligned_cols=22 Identities=41% Similarity=0.462 Sum_probs=20.3
Q ss_pred EEEEEecCCCcHHHHHHHHHhc
Q 003037 126 VISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
+|+|+|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999883
No 253
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.63 E-value=0.036 Score=66.48 Aligned_cols=179 Identities=18% Similarity=0.245 Sum_probs=93.9
Q ss_pred CCccccchhHHHHHHHHhcccccc-------cCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSE-------QQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDE 168 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 168 (854)
-..+.|.+..++.|.+.+.-+-.. +....+-+.++|++|+|||++|+++++. ....| +.+...
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~~--- 521 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRGP--- 521 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEehH---
Confidence 345788888888777765421100 0123456889999999999999999984 33333 333221
Q ss_pred HHHHHHHHHHhcCCCCCCccHHHHHHHHH-HHhcCCeEEEEEecCCCc--------Ch----hhHHHHHHhhcC--CCCC
Q 003037 169 FRIAKAIIEALEGSTPSLGELNSLLERIY-ASIARKKFLLVLDDVWTE--------DY----NKWETFQRCLKN--GLRG 233 (854)
Q Consensus 169 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~--------~~----~~~~~l~~~l~~--~~~g 233 (854)
+++.... ...+.....+. ..-...+.+|+||++..- .. .....+...+.. ...+
T Consensus 522 -----~l~~~~v------Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 590 (733)
T TIGR01243 522 -----EILSKWV------GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSN 590 (733)
T ss_pred -----HHhhccc------CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCC
Confidence 1111110 11122223333 223456799999998421 00 112223333332 2234
Q ss_pred cEEEEecccHHHHhh--cc---CcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCc
Q 003037 234 SKILVTTRKMTVAQM--MQ---SNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLP 300 (854)
Q Consensus 234 s~ilvTtR~~~v~~~--~~---~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlP 300 (854)
.-||.||........ .. -...+.++..+.++-.++|..+.... ......++. .+++.+.|.-
T Consensus 591 v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~-~~~~~~~l~----~la~~t~g~s 657 (733)
T TIGR01243 591 VVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSM-PLAEDVDLE----ELAEMTEGYT 657 (733)
T ss_pred EEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCC-CCCccCCHH----HHHHHcCCCC
Confidence 455666654443221 11 24577888888888888887654321 112222333 3556676654
No 254
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.62 E-value=0.0076 Score=62.28 Aligned_cols=134 Identities=25% Similarity=0.276 Sum_probs=74.6
Q ss_pred ccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhc-cccccccCeeEE----EEeCCcc-----C
Q 003037 98 EVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNN-NDVINHFEKRIW----VCVSDPF-----D 167 (854)
Q Consensus 98 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~-~~~~~~f~~~~w----v~~s~~~-----~ 167 (854)
.+-+|..+..--.++|. ++....|.+.|.+|.|||.||-++.-. ...++.|..++- +.++++. +
T Consensus 225 Gi~prn~eQ~~ALdlLl------d~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~ 298 (436)
T COG1875 225 GIRPRNAEQRVALDLLL------DDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGT 298 (436)
T ss_pred ccCcccHHHHHHHHHhc------CCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCc
Confidence 35567888888888888 456899999999999999999554322 122344443331 2233221 1
Q ss_pred HHH----HHHHHHH---HhcCCCCCCccHHHHHHHH---------HHHhcCC---eEEEEEecCCCcChhhHHHHHHhhc
Q 003037 168 EFR----IAKAIIE---ALEGSTPSLGELNSLLERI---------YASIARK---KFLLVLDDVWTEDYNKWETFQRCLK 228 (854)
Q Consensus 168 ~~~----~~~~i~~---~l~~~~~~~~~~~~~~~~l---------~~~l~~k---~~LlVlDdv~~~~~~~~~~l~~~l~ 228 (854)
.++ .+..|.. .+..... ...+.+...+ ..+.+++ +-++|+|.+.+-.+.+ +...+.
T Consensus 299 eEeKm~PWmq~i~DnLE~L~~~~~--~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTphe---ikTilt 373 (436)
T COG1875 299 EEEKMGPWMQAIFDNLEVLFSPNE--PGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHE---LKTILT 373 (436)
T ss_pred hhhhccchHHHHHhHHHHHhcccc--cchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHH---HHHHHH
Confidence 111 2222222 2211111 1112222221 1334555 5599999997755443 455555
Q ss_pred CCCCCcEEEEeccc
Q 003037 229 NGLRGSKILVTTRK 242 (854)
Q Consensus 229 ~~~~gs~ilvTtR~ 242 (854)
..+.||||+.|---
T Consensus 374 R~G~GsKIVl~gd~ 387 (436)
T COG1875 374 RAGEGSKIVLTGDP 387 (436)
T ss_pred hccCCCEEEEcCCH
Confidence 67789999998753
No 255
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.61 E-value=0.014 Score=54.38 Aligned_cols=117 Identities=17% Similarity=0.072 Sum_probs=63.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCC---ccCHHHHHHHHHHHh-----cCCC-CCCccH------
Q 003037 125 QVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSD---PFDEFRIAKAIIEAL-----EGST-PSLGEL------ 189 (854)
Q Consensus 125 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~---~~~~~~~~~~i~~~l-----~~~~-~~~~~~------ 189 (854)
..|-|++..|.||||+|...+-. ..++=-.+.++.+-. ......+++.+ ..+ +... ....+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~r--a~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALR--ALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 46888999999999999666552 222222344443322 22333333333 001 0000 000111
Q ss_pred -HHHHHHHHHHhcC-CeEEEEEecCCC---cChhhHHHHHHhhcCCCCCcEEEEecccHH
Q 003037 190 -NSLLERIYASIAR-KKFLLVLDDVWT---EDYNKWETFQRCLKNGLRGSKILVTTRKMT 244 (854)
Q Consensus 190 -~~~~~~l~~~l~~-k~~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 244 (854)
....+..++.+.. .-=|+|||++-. -..-..+.+...+.....+..+|+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1122333344443 455999999722 123355677887877777889999999753
No 256
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.61 E-value=0.019 Score=55.14 Aligned_cols=118 Identities=18% Similarity=0.221 Sum_probs=61.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCC--ccCHHHHHHHHHHHhcC--CCCC----------Ccc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSD--PFDEFRIAKAIIEALEG--STPS----------LGE 188 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~--~~~~~~~~~~i~~~l~~--~~~~----------~~~ 188 (854)
.-.+++|+|..|.|||||.+.++.- .....+.+++.-.. ....... .+.++- +... ...
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~---~~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~ 99 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRL---YDPTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSG 99 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC---CCCCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCH
Confidence 4568999999999999999999873 22233444332110 0011111 111110 0000 001
Q ss_pred HHHHHHHHHHHhcCCeEEEEEecCCC-cChhhHHHHHHhhcCCCCCcEEEEecccHHHHh
Q 003037 189 LNSLLERIYASIARKKFLLVLDDVWT-EDYNKWETFQRCLKNGLRGSKILVTTRKMTVAQ 247 (854)
Q Consensus 189 ~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 247 (854)
.+.-.-.+.+.+..++-++++|+-.. -+....+.+...+.....+..||++|.+.....
T Consensus 100 G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 159 (171)
T cd03228 100 GQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH
Confidence 11122234556667888999998643 233344445554443333567888888776654
No 257
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.60 E-value=0.0038 Score=59.58 Aligned_cols=152 Identities=18% Similarity=0.208 Sum_probs=75.4
Q ss_pred EEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCcc---HHHHHHHHHHHhcC
Q 003037 126 VISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGE---LNSLLERIYASIAR 202 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~---~~~~~~~l~~~l~~ 202 (854)
++.|.|.+|+||||+|..+... .. ..++++.....+ ..+..++|..........-.. ...+...+.....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~--~~---~~~~~iat~~~~-~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~- 75 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ--SG---LQVLYIATAQPF-DDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAA- 75 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH--cC---CCcEeCcCCCCC-hHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcC-
Confidence 5889999999999999988763 11 123444444433 334555554443322111111 1123333433333
Q ss_pred CeEEEEEecC--CC----c-Ch-hhHH----HHHHhhcCCCCCcEEEEecccHHHHhhccCcceEecCCCCHHHHHHHHH
Q 003037 203 KKFLLVLDDV--WT----E-DY-NKWE----TFQRCLKNGLRGSKILVTTRKMTVAQMMQSNDVILIRELSEQACWSLFE 270 (854)
Q Consensus 203 k~~LlVlDdv--~~----~-~~-~~~~----~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l~~L~~~e~~~l~~ 270 (854)
+.-++++|.+ |- . +. ..|. .+...+.. .+..+|+|+-. .-....+.++....|.
T Consensus 76 ~~~~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~~--~~~tvVlVs~E------------vg~g~vp~~~~~r~~~ 141 (170)
T PRK05800 76 PGRCVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQQ--LPAKIILVTNE------------VGMGIVPEYRLGRHFR 141 (170)
T ss_pred CCCEEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHHc--CCCCEEEEEcC------------CcccccCCCHHHHHHH
Confidence 2337888986 21 0 10 1222 23333332 45556777642 1122233445555555
Q ss_pred HHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHH
Q 003037 271 QLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAA 303 (854)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai 303 (854)
.... ...+.+...|.++..-..|+|+-+
T Consensus 142 d~lG-----~lnq~la~~ad~V~~v~~Gi~~~l 169 (170)
T PRK05800 142 DIAG-----RLNQQLAAAADEVYLVVAGLPLKL 169 (170)
T ss_pred HHHH-----HHHHHHHHHCCEEEEEeCCCcEec
Confidence 5442 233445555566666667888654
No 258
>PRK14974 cell division protein FtsY; Provisional
Probab=96.60 E-value=0.041 Score=58.45 Aligned_cols=114 Identities=19% Similarity=0.156 Sum_probs=58.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCcc--CHHHHHHHHHHHhcCCC---CCCccHHHH-HHHH
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPF--DEFRIAKAIIEALEGST---PSLGELNSL-LERI 196 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~---~~~~~~~~~-~~~l 196 (854)
++.++.++|++|+||||++..++.... ...+ .++.+... .+ .....++..++.++... ....+.... ...+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~-~V~li~~D-t~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGF-SVVIAAGD-TFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCC-eEEEecCC-cCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 578999999999999998888776322 1223 34344432 22 23334556666665432 112232222 2223
Q ss_pred HHHhcCCeEEEEEecCCCc--ChhhHHHHHHhhcCCCCCcEEEEe
Q 003037 197 YASIARKKFLLVLDDVWTE--DYNKWETFQRCLKNGLRGSKILVT 239 (854)
Q Consensus 197 ~~~l~~k~~LlVlDdv~~~--~~~~~~~l~~~l~~~~~gs~ilvT 239 (854)
...-....=++++|-+-.. +...++.+........+...++|.
T Consensus 216 ~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl 260 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVG 260 (336)
T ss_pred HHHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEee
Confidence 3222222338999987543 233445554443332333344443
No 259
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.60 E-value=0.019 Score=58.37 Aligned_cols=87 Identities=20% Similarity=0.181 Sum_probs=55.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCC------------------
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGST------------------ 183 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~------------------ 183 (854)
...+++.|+|.+|+|||++|.++... ....=..++|++..+. +..+.+++ ++++-..
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~--~~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYG--ALKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHH--HHhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 46788999999999999999888653 2123357889988653 45555543 2232110
Q ss_pred --CCCccHHHHHHHHHHHhcC-CeEEEEEecCC
Q 003037 184 --PSLGELNSLLERIYASIAR-KKFLLVLDDVW 213 (854)
Q Consensus 184 --~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 213 (854)
....+.+.+...+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112335566666666654 56689999873
No 260
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.60 E-value=0.012 Score=63.60 Aligned_cols=101 Identities=14% Similarity=0.112 Sum_probs=51.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCc-cCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDP-FDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIA 201 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 201 (854)
...++.|+|++|+||||+|..++........+ .+..++.... ......++..++.++.+.....+.. .+.+.+.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~----~l~~~l~ 296 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGK-SVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIK----KFKETLA 296 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHH----HHHHHHH
Confidence 35789999999999999998887632112112 2333333221 1223344555555544322222222 2333332
Q ss_pred -CCeEEEEEecC--CCcChhhHHHHHHhhc
Q 003037 202 -RKKFLLVLDDV--WTEDYNKWETFQRCLK 228 (854)
Q Consensus 202 -~k~~LlVlDdv--~~~~~~~~~~l~~~l~ 228 (854)
...=++|+|-. -..+....+.+...+.
T Consensus 297 ~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~ 326 (432)
T PRK12724 297 RDGSELILIDTAGYSHRNLEQLERMQSFYS 326 (432)
T ss_pred hCCCCEEEEeCCCCCccCHHHHHHHHHHHH
Confidence 33346889943 2223344555554443
No 261
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.59 E-value=0.0094 Score=58.40 Aligned_cols=87 Identities=20% Similarity=0.143 Sum_probs=52.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCc-cCHHHHHHHHHHHhcCCC---CCCccHHHHH-HHHHH
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDP-FDEFRIAKAIIEALEGST---PSLGELNSLL-ERIYA 198 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~---~~~~~~~~~~-~~l~~ 198 (854)
++|+.++|+.|+||||.+.+++.....+ -..+..++.... ....+.++..++.++.+. ....+..... +.+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 4789999999999999998877743322 345667776543 345667788888887542 1222233333 33333
Q ss_pred HhcCCeEEEEEecC
Q 003037 199 SIARKKFLLVLDDV 212 (854)
Q Consensus 199 ~l~~k~~LlVlDdv 212 (854)
.-.++.=++++|=.
T Consensus 79 ~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 79 FRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHTTSSEEEEEE-
T ss_pred HhhcCCCEEEEecC
Confidence 32233447888865
No 262
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.57 E-value=0.041 Score=51.76 Aligned_cols=124 Identities=21% Similarity=0.273 Sum_probs=70.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEE---------------------eCCcc---------------
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVC---------------------VSDPF--------------- 166 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~---------------------~s~~~--------------- 166 (854)
.-..+.|+|++|.||||+.+.+|...+. =.+.+|+. |-+++
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~p---t~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~p 103 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERP---TRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP 103 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcC---CCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhh
Confidence 4568999999999999999999985332 12334442 00111
Q ss_pred ------CHHHHHHHHHHHh---cCC------CCCCccHHHHHHHHHHHhcCCeEEEEEecCC-C-cChhhHHHHHHhhcC
Q 003037 167 ------DEFRIAKAIIEAL---EGS------TPSLGELNSLLERIYASIARKKFLLVLDDVW-T-EDYNKWETFQRCLKN 229 (854)
Q Consensus 167 ------~~~~~~~~i~~~l---~~~------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~-~-~~~~~~~~l~~~l~~ 229 (854)
...++-+...+.| +.. +.....-++-.-.+.+.+-+++-+|+-|.-- + +....|+-+.-+-.-
T Consensus 104 L~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeei 183 (223)
T COG2884 104 LRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI 183 (223)
T ss_pred hhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHH
Confidence 1122222222222 211 1112223333445666777899999999531 1 223456554433333
Q ss_pred CCCCcEEEEecccHHHHhhc
Q 003037 230 GLRGSKILVTTRKMTVAQMM 249 (854)
Q Consensus 230 ~~~gs~ilvTtR~~~v~~~~ 249 (854)
+..|..||++|-+......+
T Consensus 184 nr~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 184 NRLGTTVLMATHDLELVNRM 203 (223)
T ss_pred hhcCcEEEEEeccHHHHHhc
Confidence 45789999999998877664
No 263
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.56 E-value=0.022 Score=64.30 Aligned_cols=66 Identities=21% Similarity=0.281 Sum_probs=47.2
Q ss_pred cccccCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEE
Q 003037 91 TSLIDVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVC 161 (854)
Q Consensus 91 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 161 (854)
-.|....+++--.+-++++..||.....+ ....+++.+.|++|+||||.++.++++ . .|+.+-|.+
T Consensus 13 y~P~~~~eLavhkkKv~eV~~wl~~~~~~-~~~~~iLlLtGP~G~GKtttv~~La~e--l--g~~v~Ew~n 78 (519)
T PF03215_consen 13 YAPKTLDELAVHKKKVEEVRSWLEEMFSG-SSPKRILLLTGPSGCGKTTTVKVLAKE--L--GFEVQEWIN 78 (519)
T ss_pred cCCCCHHHhhccHHHHHHHHHHHHHHhcc-CCCcceEEEECCCCCCHHHHHHHHHHH--h--CCeeEEecC
Confidence 33444556666677888999998754321 234679999999999999999999984 2 355566764
No 264
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.54 E-value=0.012 Score=54.63 Aligned_cols=21 Identities=43% Similarity=0.498 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHHh
Q 003037 126 VISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~ 146 (854)
+|.+.|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999986
No 265
>PRK06696 uridine kinase; Validated
Probab=96.54 E-value=0.0054 Score=61.83 Aligned_cols=44 Identities=20% Similarity=0.231 Sum_probs=35.6
Q ss_pred cchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 101 GRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 101 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.|++-+++|.+.+.... .++..+|+|.|.+|+||||||+.+...
T Consensus 2 ~~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 2 SRKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred cHHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 36677788888876533 246889999999999999999999874
No 266
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.53 E-value=0.03 Score=54.24 Aligned_cols=119 Identities=15% Similarity=0.095 Sum_probs=61.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcC--C-------------CCCCc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEG--S-------------TPSLG 187 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~--~-------------~~~~~ 187 (854)
.-.+++|.|..|+|||||++.++.-.. .-.+.+++.-. +.......+-+.++- + .....
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS 100 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFS 100 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCC
Confidence 345799999999999999999987421 12233332211 111110111111110 0 00011
Q ss_pred cHHHHHHHHHHHhcCCeEEEEEecCCC-cChhhHHHHHHhhcCCCCCcEEEEecccHHHHh
Q 003037 188 ELNSLLERIYASIARKKFLLVLDDVWT-EDYNKWETFQRCLKNGLRGSKILVTTRKMTVAQ 247 (854)
Q Consensus 188 ~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 247 (854)
.-+.-.-.+.+.+..++=++++|+... -+....+.+...+.....+..||++|.+.....
T Consensus 101 ~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 101 GGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 112222334566667888999998743 233344445454443334667888888776554
No 267
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.52 E-value=0.0076 Score=63.28 Aligned_cols=84 Identities=20% Similarity=0.152 Sum_probs=55.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCC-----CCCCccHHHHHHHH
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGS-----TPSLGELNSLLERI 196 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~~l 196 (854)
+.-+++-|+|++|+||||||.+++.. ....-..++|++....+++. .++.++.+ .....+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 46789999999999999999887653 33334567899887766653 33444432 11222455555555
Q ss_pred HHHhc-CCeEEEEEecC
Q 003037 197 YASIA-RKKFLLVLDDV 212 (854)
Q Consensus 197 ~~~l~-~k~~LlVlDdv 212 (854)
...++ +..-++|+|-|
T Consensus 126 ~~li~s~~~~lIVIDSv 142 (325)
T cd00983 126 DSLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHHhccCCCEEEEcch
Confidence 55544 45668999987
No 268
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.51 E-value=0.014 Score=61.73 Aligned_cols=59 Identities=20% Similarity=0.198 Sum_probs=42.4
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhccccc----cccCeeEEEEeCCccCHHHHHHHHHHHhcC
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNNNDVI----NHFEKRIWVCVSDPFDEFRIAKAIIEALEG 181 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 181 (854)
..-+++-|+|.+|+|||+|+.+++-..... +.=..++|++....++++++. ++++.++.
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~ 156 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGV 156 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCC
Confidence 367899999999999999997765422221 112478899999988888765 45666654
No 269
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.51 E-value=0.0021 Score=71.28 Aligned_cols=50 Identities=24% Similarity=0.282 Sum_probs=41.3
Q ss_pred CccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHh
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.+++|.++.+++|++.|.....+...+.+++.++|++|+||||||+.+++
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 36899999999999998443322234668999999999999999999988
No 270
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.50 E-value=0.025 Score=56.87 Aligned_cols=125 Identities=18% Similarity=0.175 Sum_probs=71.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCC-----ccCHHHHHHHHHHHhcCCC------CCCccHHH
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSD-----PFDEFRIAKAIIEALEGST------PSLGELNS 191 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-----~~~~~~~~~~i~~~l~~~~------~~~~~~~~ 191 (854)
+-.+++|+|..|+||||+++.+.. ....-.+.+++.-.+ .....+...++++.++... +..-+..+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 456899999999999999999987 333333444443211 2223345566666665331 22222223
Q ss_pred HHH-HHHHHhcCCeEEEEEecCCC-cChhhHHHHHHhhcC--CCCCcEEEEecccHHHHhhcc
Q 003037 192 LLE-RIYASIARKKFLLVLDDVWT-EDYNKWETFQRCLKN--GLRGSKILVTTRKMTVAQMMQ 250 (854)
Q Consensus 192 ~~~-~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~--~~~gs~ilvTtR~~~v~~~~~ 250 (854)
.++ .+.+.|.-++-++|.|..-. .+...-.++...+.. ...|-..+..|-+-.++..+.
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhc
Confidence 333 35577788999999998632 122222333333321 224556777777777766544
No 271
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.49 E-value=0.0076 Score=63.26 Aligned_cols=84 Identities=19% Similarity=0.154 Sum_probs=55.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCC-----CCCCccHHHHHHHH
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGS-----TPSLGELNSLLERI 196 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~~l 196 (854)
+.-+++-|+|++|+||||||.+++.. ....-..++|++..+.++.. .++.++.+ .......++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 46789999999999999999887663 33334567799887765553 34444432 11223455555555
Q ss_pred HHHhc-CCeEEEEEecC
Q 003037 197 YASIA-RKKFLLVLDDV 212 (854)
Q Consensus 197 ~~~l~-~k~~LlVlDdv 212 (854)
...++ +..-++|+|-+
T Consensus 126 ~~li~~~~~~lIVIDSv 142 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSV 142 (321)
T ss_pred HHHhhccCCcEEEEcch
Confidence 55554 45679999987
No 272
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.49 E-value=0.00011 Score=81.45 Aligned_cols=76 Identities=20% Similarity=0.374 Sum_probs=35.0
Q ss_pred hcCCCcccEEEecCCCCccccccccccccccccccCCCceeeecCCCCcccchh-hhcCCCCcEEeecCccccccccccc
Q 003037 504 FDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIEELPET-CCELFNVQTLEVLDCRSFRRLPQGF 582 (854)
Q Consensus 504 ~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~i 582 (854)
+.-++.|+.|+|++|+ +.+.- .+..|.+|++|||++|.+..+|.- ...+ +|+.|.+++|. ++++- +|
T Consensus 183 Lqll~ale~LnLshNk--------~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~-l~tL~-gi 250 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNK--------FTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNA-LTTLR-GI 250 (1096)
T ss_pred HHHHHHhhhhccchhh--------hhhhH-HHHhcccccccccccchhccccccchhhh-hheeeeecccH-HHhhh-hH
Confidence 4444455555555555 33332 344555555555555555544431 1111 25555555554 44432 34
Q ss_pred ccCCCCccc
Q 003037 583 GKLVNLRNL 591 (854)
Q Consensus 583 ~~L~~L~~L 591 (854)
.+|.+|++|
T Consensus 251 e~LksL~~L 259 (1096)
T KOG1859|consen 251 ENLKSLYGL 259 (1096)
T ss_pred Hhhhhhhcc
Confidence 444444444
No 273
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.47 E-value=0.24 Score=51.91 Aligned_cols=157 Identities=12% Similarity=0.083 Sum_probs=91.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhcc---c-----cccccCeeEEEEe-CCccCHHHHHHHHHHHhcCCCCCCccHHHHH
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNN---D-----VINHFEKRIWVCV-SDPFDEFRIAKAIIEALEGSTPSLGELNSLL 193 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~---~-----~~~~f~~~~wv~~-s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 193 (854)
-..+..++|..|.||+++|..+.+.. . ...|=+...++.. +....++++. ++.+.+.-...
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~~~--------- 86 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFSSF--------- 86 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccCCc---------
Confidence 35677799999999999998887631 0 0111112233321 1111222111 22222211100
Q ss_pred HHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccH-HHH-hhccCcceEecCCCCHHHHHHHHHH
Q 003037 194 ERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKM-TVA-QMMQSNDVILIRELSEQACWSLFEQ 271 (854)
Q Consensus 194 ~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~-~~~~~~~~~~l~~L~~~e~~~l~~~ 271 (854)
-.+.+-++|+||+..........+...+...+.++.+|++|.+. .+. +..+....+++.++++++..+.+..
T Consensus 87 ------~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 87 ------VQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred ------ccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHH
Confidence 01477788999987666667788898888877888777666443 333 2344577999999999999888765
Q ss_pred HhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHH
Q 003037 272 LAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKT 305 (854)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ 305 (854)
.. . . .+.++.++...+|.=-|+..
T Consensus 161 ~~---~---~----~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 161 KN---K---E----KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred cC---C---C----hhHHHHHHHHcCCHHHHHHH
Confidence 31 1 1 23355566666663344444
No 274
>PRK13695 putative NTPase; Provisional
Probab=96.47 E-value=0.0071 Score=58.38 Aligned_cols=21 Identities=38% Similarity=0.452 Sum_probs=19.2
Q ss_pred EEEEecCCCcHHHHHHHHHhc
Q 003037 127 ISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 127 v~I~G~gGiGKTtLa~~v~~~ 147 (854)
++|+|.+|+|||||++.+++.
T Consensus 3 i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998874
No 275
>PTZ00494 tuzin-like protein; Provisional
Probab=96.45 E-value=0.13 Score=55.06 Aligned_cols=171 Identities=15% Similarity=0.143 Sum_probs=107.8
Q ss_pred cccccCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHH
Q 003037 91 TSLIDVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFR 170 (854)
Q Consensus 91 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 170 (854)
..+..+..+|.|++|-..+...|.... ...++++.+.|.-|.||++|.+.....+. -..++|.+... ++
T Consensus 365 ~a~a~~~~~V~R~~eE~~vRqvL~qld---~aHPRIvV~TG~~GcGKSslcRsAvrkE~-----~paV~VDVRg~---ED 433 (664)
T PTZ00494 365 LAAAAEAFEVRREDEEALVRSVLTQMA---PSHPRIVALAGGSGGGRCVPCRRAVRVEG-----VALVHVDVGGT---ED 433 (664)
T ss_pred ccccccccccchhhHHHHHHHHHhhcc---CCCCcEEEEecCCCCCchHHHHHHHHHcC-----CCeEEEEecCC---cc
Confidence 344567789999999888888887665 34799999999999999999998877422 24667888754 44
Q ss_pred HHHHHHHHhcCCCCC-CccH-HHHHHHH---HHHhcCCeEEEEEecCCCcC-hhhHHHHHHhhcCCCCCcEEEEecccHH
Q 003037 171 IAKAIIEALEGSTPS-LGEL-NSLLERI---YASIARKKFLLVLDDVWTED-YNKWETFQRCLKNGLRGSKILVTTRKMT 244 (854)
Q Consensus 171 ~~~~i~~~l~~~~~~-~~~~-~~~~~~l---~~~l~~k~~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 244 (854)
.++.+.+.++.+..+ ..|. +-+.+.. .....++.=+||+-=-.-.+ ...+.+.. .+.....-|+|++----+.
T Consensus 434 tLrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v-aLacDrRlCHvv~EVplES 512 (664)
T PTZ00494 434 TLRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV-SLVSDCQACHIVLAVPMKA 512 (664)
T ss_pred hHHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH-HHHccchhheeeeechHhh
Confidence 577888899887533 2332 2222222 22234555555553221111 12233322 2333445678887655444
Q ss_pred HHhhc---cCcceEecCCCCHHHHHHHHHHHh
Q 003037 245 VAQMM---QSNDVILIRELSEQACWSLFEQLA 273 (854)
Q Consensus 245 v~~~~---~~~~~~~l~~L~~~e~~~l~~~~~ 273 (854)
+.... ..-+.|-+++++.++|.++.++..
T Consensus 513 LT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 513 LTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 33221 224689999999999999887653
No 276
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.44 E-value=0.011 Score=61.66 Aligned_cols=88 Identities=19% Similarity=0.130 Sum_probs=48.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCcc-CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPF-DEFRIAKAIIEALEGSTPSLGELNSLLERIYASIA 201 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 201 (854)
..+++.|+|++|+||||++..++.....+..-..+..|+..... .....+....+.++.......+...+...+.. +.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~-~~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDR-LR 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHH-cc
Confidence 56799999999999999998887642222111245566654321 22333444444444433223344444444443 33
Q ss_pred CCeEEEEEecC
Q 003037 202 RKKFLLVLDDV 212 (854)
Q Consensus 202 ~k~~LlVlDdv 212 (854)
+ .=+|++|..
T Consensus 272 ~-~d~vliDt~ 281 (282)
T TIGR03499 272 D-KDLILIDTA 281 (282)
T ss_pred C-CCEEEEeCC
Confidence 3 347777753
No 277
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.43 E-value=0.019 Score=66.27 Aligned_cols=134 Identities=13% Similarity=0.088 Sum_probs=75.5
Q ss_pred cCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHH
Q 003037 95 DVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKA 174 (854)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 174 (854)
....++|....+.++.+.+..... ...-|.|+|..|+|||++|+.+++..... -...+.|++.... ...+..
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~s~r~--~~pfv~i~c~~~~--~~~~~~ 265 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYLSPRA--KRPFVKVNCAALS--ETLLES 265 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHhCCCC--CCCeEEeecCCCC--HHHHHH
Confidence 356899999999999888765542 33456799999999999999998742211 1123444444321 122222
Q ss_pred HHHHhcCCCCCC-cc-HHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCC-----------CCcEEEEecc
Q 003037 175 IIEALEGSTPSL-GE-LNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGL-----------RGSKILVTTR 241 (854)
Q Consensus 175 i~~~l~~~~~~~-~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR 241 (854)
.+.+..... .. .......+ -....=.|+||++..-.......+...+..+. ...|||.||.
T Consensus 266 ---~lfg~~~~~~~~~~~~~~g~~---~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~ 339 (534)
T TIGR01817 266 ---ELFGHEKGAFTGAIAQRKGRF---ELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATN 339 (534)
T ss_pred ---HHcCCCCCccCCCCcCCCCcc---cccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCC
Confidence 221211100 00 00000000 01233468899997766667777777775432 1358888775
Q ss_pred c
Q 003037 242 K 242 (854)
Q Consensus 242 ~ 242 (854)
.
T Consensus 340 ~ 340 (534)
T TIGR01817 340 R 340 (534)
T ss_pred C
Confidence 4
No 278
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.42 E-value=0.02 Score=61.22 Aligned_cols=131 Identities=11% Similarity=0.058 Sum_probs=70.3
Q ss_pred cccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHH
Q 003037 99 VRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEA 178 (854)
Q Consensus 99 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 178 (854)
+||+...+.++.+.+..... ...-|.|+|..|+||+++|+.+....... -...+-|++.... ...+...+
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~~s~r~--~~pfv~vnc~~~~--~~~l~~~l-- 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHYLSKRW--QGPLVKLNCAALS--ENLLDSEL-- 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHHhcCcc--CCCeEEEeCCCCC--hHHHHHHH--
Confidence 47888888888777765543 33457899999999999999998742211 1122334444321 22222211
Q ss_pred hcCCCCCCccHHH-HHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCC-----------CCcEEEEeccc
Q 003037 179 LEGSTPSLGELNS-LLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGL-----------RGSKILVTTRK 242 (854)
Q Consensus 179 l~~~~~~~~~~~~-~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~ 242 (854)
++........... ....+. ....=.|+||++..-.......+...+..+. ...|||.||..
T Consensus 71 fG~~~g~~~ga~~~~~G~~~---~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~ 143 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFE---RADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNA 143 (329)
T ss_pred hccccccccCcccccCCchh---hCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechh
Confidence 1111100000000 000011 1234468999997666666667777665432 33588888754
No 279
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.42 E-value=0.022 Score=54.24 Aligned_cols=118 Identities=17% Similarity=0.155 Sum_probs=64.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCC--ccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSD--PFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASI 200 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 200 (854)
.-.+++|+|..|.|||||.+.++.. .....+.+++.-.. ..+...... +.++-. .+...-+.-.-.+.+.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~-~qLS~G~~qrl~laral 97 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGL---YKPDSGEILVDGKEVSFASPRDARR---AGIAMV-YQLSVGERQMVEIARAL 97 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC---CCCCCeEEEECCEECCcCCHHHHHh---cCeEEE-EecCHHHHHHHHHHHHH
Confidence 3458999999999999999999873 22344555543211 111111111 111110 01122223333455666
Q ss_pred cCCeEEEEEecCCC-cChhhHHHHHHhhcCC-CCCcEEEEecccHHHHh
Q 003037 201 ARKKFLLVLDDVWT-EDYNKWETFQRCLKNG-LRGSKILVTTRKMTVAQ 247 (854)
Q Consensus 201 ~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~ 247 (854)
-..+-++++|+.-. -+....+.+...+... ..|..||++|.+.....
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 77888999998743 2334444555554432 23667888888765433
No 280
>PRK09354 recA recombinase A; Provisional
Probab=96.41 E-value=0.01 Score=62.84 Aligned_cols=85 Identities=19% Similarity=0.142 Sum_probs=56.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCC-----CCCCccHHHHHHHH
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGS-----TPSLGELNSLLERI 196 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~~l 196 (854)
+.-+++-|+|++|+||||||.+++.. ....-..++|++....++.. .++.++.+ .......++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 46789999999999999999887763 33334578899988777653 34445432 11223455555555
Q ss_pred HHHhc-CCeEEEEEecCC
Q 003037 197 YASIA-RKKFLLVLDDVW 213 (854)
Q Consensus 197 ~~~l~-~k~~LlVlDdv~ 213 (854)
...++ +..-++|+|-|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 55554 456689999973
No 281
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.058 Score=59.60 Aligned_cols=180 Identities=19% Similarity=0.316 Sum_probs=98.0
Q ss_pred ccccchhHHHHHHHHhccccccc-------CCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHH
Q 003037 98 EVRGRDEEKNTLKSKLLCESSEQ-------QNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFR 170 (854)
Q Consensus 98 ~~vGr~~~~~~l~~~L~~~~~~~-------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 170 (854)
++=|-++...++...+..+-..+ -..+.=|.++|++|+|||-||++|+|. ....| ++|-..
T Consensus 512 dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANE--ag~NF-----isVKGP----- 579 (802)
T KOG0733|consen 512 DIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANE--AGANF-----ISVKGP----- 579 (802)
T ss_pred hcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhh--ccCce-----EeecCH-----
Confidence 34445555566655554332110 123556789999999999999999994 44444 555432
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHH-HhcCCeEEEEEecCCC-----cChhhH------HHHHHhhcC--CCCCcEE
Q 003037 171 IAKAIIEALEGSTPSLGELNSLLERIYA-SIARKKFLLVLDDVWT-----EDYNKW------ETFQRCLKN--GLRGSKI 236 (854)
Q Consensus 171 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~-----~~~~~~------~~l~~~l~~--~~~gs~i 236 (854)
+++..--+ +-+..++.+.+ .-...+++|+||.+.. .+...| .+++.-+.- ...|.-|
T Consensus 580 ---ELlNkYVG------ESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~v 650 (802)
T KOG0733|consen 580 ---ELLNKYVG------ESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYV 650 (802)
T ss_pred ---HHHHHHhh------hHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEE
Confidence 11111111 11233333333 3346799999999832 111122 233333332 2356566
Q ss_pred EEecccHHHHhh--ccC---cceEecCCCCHHHHHHHHHHHhcCCCC-CCCchHHHHHHHHHHhhcCCCc
Q 003037 237 LVTTRKMTVAQM--MQS---NDVILIRELSEQACWSLFEQLAFFGRP-RSECEQLIEIGRKIVGKCKGLP 300 (854)
Q Consensus 237 lvTtR~~~v~~~--~~~---~~~~~l~~L~~~e~~~l~~~~~~~~~~-~~~~~~~~~~~~~I~~~~~GlP 300 (854)
|-.|-.+++... +.+ +..+-+..=+.+|-.++++...-.... ....-++.++|+. .+|.|.-
T Consensus 651 iaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 651 IAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred EeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 666654444322 222 446667777788888888877643222 1344566776664 4566665
No 282
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.39 E-value=0.048 Score=52.04 Aligned_cols=116 Identities=14% Similarity=0.054 Sum_probs=61.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEE-------EeCCccC--HHHHHHHHHHHhcCCCCCCccHHHHH
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWV-------CVSDPFD--EFRIAKAIIEALEGSTPSLGELNSLL 193 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv-------~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~ 193 (854)
.-.+++|+|..|.|||||++.+..... ...+.+++ .+.+... ...+...+... .......-+...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~r 99 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWP---WGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQR 99 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHH
Confidence 445899999999999999999987422 11122211 1222221 11222222210 111222223333
Q ss_pred HHHHHHhcCCeEEEEEecCCC-cChhhHHHHHHhhcCCCCCcEEEEecccHHHH
Q 003037 194 ERIYASIARKKFLLVLDDVWT-EDYNKWETFQRCLKNGLRGSKILVTTRKMTVA 246 (854)
Q Consensus 194 ~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 246 (854)
-.+.+.+..++=++++|+--. -+....+.+...+... +..||++|.+....
T Consensus 100 v~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 100 LAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 445566677888899998632 2333444455544433 35677777776554
No 283
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.38 E-value=0.051 Score=60.06 Aligned_cols=103 Identities=15% Similarity=0.124 Sum_probs=55.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCcc-CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcC
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPF-DEFRIAKAIIEALEGSTPSLGELNSLLERIYASIAR 202 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 202 (854)
.+++.++|++|+||||++..++........-..+..|+....- .....++...+.++.......+.+++...+.+ +.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~-~~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ-LR- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-hC-
Confidence 4689999999999999998776632201222356667654321 11223344444444433223334445555543 23
Q ss_pred CeEEEEEecCCC--cChhhHHHHHHhhc
Q 003037 203 KKFLLVLDDVWT--EDYNKWETFQRCLK 228 (854)
Q Consensus 203 k~~LlVlDdv~~--~~~~~~~~l~~~l~ 228 (854)
..=++|+|..-. .+....+.+...+.
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~ 326 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIE 326 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence 356888997632 23333444555544
No 284
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.036 Score=56.36 Aligned_cols=81 Identities=16% Similarity=0.234 Sum_probs=47.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhcccc--ccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDV--INHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASI 200 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 200 (854)
-.|+|.++|++|.|||+|.+++++...+ ...|....-+.++. ..++...... ...-+..+.+.+.+.+
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsE------SgKlV~kmF~kI~ELv 245 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSE------SGKLVAKMFQKIQELV 245 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhh------hhhHHHHHHHHHHHHH
Confidence 4689999999999999999999996433 34454444444432 1222222211 1123344455555555
Q ss_pred cCCe--EEEEEecCC
Q 003037 201 ARKK--FLLVLDDVW 213 (854)
Q Consensus 201 ~~k~--~LlVlDdv~ 213 (854)
.++. +++.+|.|.
T Consensus 246 ~d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 246 EDRGNLVFVLIDEVE 260 (423)
T ss_pred hCCCcEEEEEeHHHH
Confidence 5553 455578883
No 285
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.34 E-value=0.032 Score=53.59 Aligned_cols=123 Identities=15% Similarity=0.181 Sum_probs=64.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc---cccccc---cC--eeEEEEeCCccCHHHHHHHHHHHhcCCCC------CCcc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN---NDVINH---FE--KRIWVCVSDPFDEFRIAKAIIEALEGSTP------SLGE 188 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~---~~~~~~---f~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------~~~~ 188 (854)
.-.+++|+|+.|+|||||.+.+..+ ..+... |. .+.|+ .+ .+.++.++.... ..-+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 4568999999999999999988632 111111 10 12232 11 344555543211 1111
Q ss_pred -HHHHHHHHHHHhcCC--eEEEEEecCCC-cChhhHHHHHHhhcCC-CCCcEEEEecccHHHHhhccCcceEec
Q 003037 189 -LNSLLERIYASIARK--KFLLVLDDVWT-EDYNKWETFQRCLKNG-LRGSKILVTTRKMTVAQMMQSNDVILI 257 (854)
Q Consensus 189 -~~~~~~~l~~~l~~k--~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~~~~~~~~~~l 257 (854)
-+...-.+.+.+..+ +-++++|+.-. -+....+.+...+... ..|..||++|.+...... .+..+.+
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 122223344555566 77888998633 2334444444444322 246678888887766532 3344444
No 286
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.034 Score=65.48 Aligned_cols=122 Identities=16% Similarity=0.251 Sum_probs=77.0
Q ss_pred ccccchhHHHHHHHHhcccccccCC--CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHH
Q 003037 98 EVRGRDEEKNTLKSKLLCESSEQQN--AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAI 175 (854)
Q Consensus 98 ~~vGr~~~~~~l~~~L~~~~~~~~~--~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 175 (854)
.++|.++.+..|.+.+.....+-.. ....+.+.|+.|+|||-||++++.. +-+..+..+-++.++... +
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~--~Fgse~~~IriDmse~~e-------v 633 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEY--VFGSEENFIRLDMSEFQE-------V 633 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHH--HcCCccceEEechhhhhh-------h
Confidence 4788888888888887765532112 4678889999999999999999873 433444555555554222 2
Q ss_pred HHHhcCCCCCCccHHHHHHHHHHHhcCCeE-EEEEecCCCcChhhHHHHHHhhcCC
Q 003037 176 IEALEGSTPSLGELNSLLERIYASIARKKF-LLVLDDVWTEDYNKWETFQRCLKNG 230 (854)
Q Consensus 176 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~~~~~~~~l~~~l~~~ 230 (854)
.+.++.+ +.-.. ......+.+.++.++| +|.||||...+......+.+.+..+
T Consensus 634 skligsp-~gyvG-~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~G 687 (898)
T KOG1051|consen 634 SKLIGSP-PGYVG-KEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRG 687 (898)
T ss_pred hhccCCC-ccccc-chhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcC
Confidence 2333332 21111 1223466777777766 6679999776666666666766654
No 287
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.33 E-value=0.039 Score=53.04 Aligned_cols=104 Identities=19% Similarity=0.130 Sum_probs=57.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEE------eCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHH
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVC------VSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERI 196 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~------~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l 196 (854)
.-.+++|+|..|+|||||++.+..-. ....+.+++. +.+... ...-+.-.-.+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~l 82 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL---IPNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAI 82 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC---CCCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHH
Confidence 44589999999999999999998731 2222333321 111111 11122223345
Q ss_pred HHHhcCCeEEEEEecCCC-cChhhHHHHHHhhcCC-CC-CcEEEEecccHHHHh
Q 003037 197 YASIARKKFLLVLDDVWT-EDYNKWETFQRCLKNG-LR-GSKILVTTRKMTVAQ 247 (854)
Q Consensus 197 ~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~-gs~ilvTtR~~~v~~ 247 (854)
.+.+..++-++++|+--. -+....+.+...+... .. +..||++|.+.....
T Consensus 83 aral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 83 AAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 566667788999998633 2333334444444321 12 245777776655444
No 288
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.33 E-value=0.033 Score=59.85 Aligned_cols=89 Identities=15% Similarity=0.107 Sum_probs=52.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCc-cCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDP-FDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIA 201 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 201 (854)
+..++.++|+.|+||||++.++......+.....+..++.... ....+.++...+.++.......+..++...+. .+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-~l~ 214 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-ELR 214 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH-Hhc
Confidence 4679999999999999999998874211111234556654332 23455666666777655332233333333333 344
Q ss_pred CCeEEEEEecCC
Q 003037 202 RKKFLLVLDDVW 213 (854)
Q Consensus 202 ~k~~LlVlDdv~ 213 (854)
++ -++++|..-
T Consensus 215 ~~-DlVLIDTaG 225 (374)
T PRK14722 215 NK-HMVLIDTIG 225 (374)
T ss_pred CC-CEEEEcCCC
Confidence 44 556699874
No 289
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.32 E-value=0.0083 Score=58.45 Aligned_cols=77 Identities=22% Similarity=0.230 Sum_probs=45.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHh--cCCCCCCccHHHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEAL--EGSTPSLGELNSLLERIYASI 200 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l--~~~~~~~~~~~~~~~~l~~~l 200 (854)
+..+|+|.|.+|+||||+|+.++.. .... .++-++....+... -.....+.. .-..+...+.+-+.+.|...+
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~--~~~~--~~~~I~~D~YYk~~-~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~ 81 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQ--LGVE--KVVVISLDDYYKDQ-SHLPFEERNKINYDHPEAFDLDLLIEHLKDLK 81 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHH--hCcC--cceEeeccccccch-hhcCHhhcCCcCccChhhhcHHHHHHHHHHHH
Confidence 5689999999999999999999984 3333 22223322222211 111111111 122344566777778888887
Q ss_pred cCCe
Q 003037 201 ARKK 204 (854)
Q Consensus 201 ~~k~ 204 (854)
++++
T Consensus 82 ~g~~ 85 (218)
T COG0572 82 QGKP 85 (218)
T ss_pred cCCc
Confidence 7776
No 290
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.31 E-value=0.036 Score=60.04 Aligned_cols=106 Identities=17% Similarity=0.161 Sum_probs=61.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccc--cccCeeEEEEeCCcc-CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHH
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVI--NHFEKRIWVCVSDPF-DEFRIAKAIIEALEGSTPSLGELNSLLERIYAS 199 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 199 (854)
..++|.++|+.|+||||.+..++...... .+-..+..+++.... .....++..++.++.+-....+.+.+...+.+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 46899999999999999998887642221 112245555555321 233346666666665433334455555555443
Q ss_pred hcCCeEEEEEecCCCc--ChhhHHHHHHhhcCC
Q 003037 200 IARKKFLLVLDDVWTE--DYNKWETFQRCLKNG 230 (854)
Q Consensus 200 l~~k~~LlVlDdv~~~--~~~~~~~l~~~l~~~ 230 (854)
...-++++|-+-.. +......+...+...
T Consensus 253 --~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~ 283 (388)
T PRK12723 253 --KDFDLVLVDTIGKSPKDFMKLAEMKELLNAC 283 (388)
T ss_pred --CCCCEEEEcCCCCCccCHHHHHHHHHHHHhc
Confidence 44668899987442 222345555555543
No 291
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.31 E-value=0.005 Score=58.29 Aligned_cols=97 Identities=23% Similarity=0.232 Sum_probs=53.8
Q ss_pred EeeeCCCCCCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccccc--ccccccCCCc
Q 003037 465 MLKLGYDSFPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIP--KEIKKLIHLR 542 (854)
Q Consensus 465 ~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP--~~i~~L~~L~ 542 (854)
.+..++......+..++.|.+|.+.+|. +..+-|..-..+++|.+|.|.+|. +.++- ..+..++.|+
T Consensus 48 DLtdNdl~~l~~lp~l~rL~tLll~nNr---It~I~p~L~~~~p~l~~L~LtnNs--------i~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 48 DLTDNDLRKLDNLPHLPRLHTLLLNNNR---ITRIDPDLDTFLPNLKTLILTNNS--------IQELGDLDPLASCPKLE 116 (233)
T ss_pred cccccchhhcccCCCccccceEEecCCc---ceeeccchhhhccccceEEecCcc--------hhhhhhcchhccCCccc
Confidence 3344444444555666667777776666 333333333445566677777666 44432 2234556667
Q ss_pred eeeecCCCCcccch----hhhcCCCCcEEeecCc
Q 003037 543 FLKLVWLDIEELPE----TCCELFNVQTLEVLDC 572 (854)
Q Consensus 543 ~L~L~~~~i~~lP~----~i~~L~~L~~L~l~~~ 572 (854)
||.+-+|.++.-+. -+.++++|++||..+.
T Consensus 117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 77766666654443 2456666666666553
No 292
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.29 E-value=0.0064 Score=57.57 Aligned_cols=107 Identities=20% Similarity=0.264 Sum_probs=72.1
Q ss_pred ccCccEEEEecccCCCCCCCCCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCCCccceeeccccccc
Q 003037 695 LNKLKKLVLYQFYLCDTMPPLGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLKQVLFYNICHW 774 (854)
Q Consensus 695 l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l 774 (854)
+.+...++|++|.+. .++.+..++.|..|.|.+|. +..|...+. ..+|+|+.|.+.+ +++
T Consensus 41 ~d~~d~iDLtdNdl~-~l~~lp~l~rL~tLll~nNr-It~I~p~L~-----------------~~~p~l~~L~Ltn-Nsi 100 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLR-KLDNLPHLPRLHTLLLNNNR-ITRIDPDLD-----------------TFLPNLKTLILTN-NSI 100 (233)
T ss_pred ccccceecccccchh-hcccCCCccccceEEecCCc-ceeeccchh-----------------hhccccceEEecC-cch
Confidence 446677888888653 34556778888888888876 677765432 2578888888887 444
Q ss_pred cccccCCCccccCCCccceeeecccccCcCCCc----CCCCCCCcCEEEEecCc
Q 003037 775 EEWDFGKGDSITIMPQLKKLEFERCTELKSVPE----KLLRSTTLEELSIVECP 824 (854)
Q Consensus 775 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~----~l~~l~~L~~L~l~~c~ 824 (854)
.++.... .+..+|.|++|.+-+|+.-. .+. .+..+|+|+.||..+-.
T Consensus 101 ~~l~dl~--pLa~~p~L~~Ltll~Npv~~-k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 101 QELGDLD--PLASCPKLEYLTLLGNPVEH-KKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred hhhhhcc--hhccCCccceeeecCCchhc-ccCceeEEEEecCcceEeehhhhh
Confidence 4444332 35578899999988886332 221 24567899999987764
No 293
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.26 E-value=0.0039 Score=61.30 Aligned_cols=109 Identities=23% Similarity=0.198 Sum_probs=54.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHH-h-
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYAS-I- 200 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l- 200 (854)
+.+++.|.|.+|.||||+++.+... .... ...+.+......-... +.+..+.. ..++.......... .
T Consensus 17 ~~~~~~l~G~aGtGKT~~l~~~~~~--~~~~-g~~v~~~apT~~Aa~~----L~~~~~~~---a~Ti~~~l~~~~~~~~~ 86 (196)
T PF13604_consen 17 GDRVSVLQGPAGTGKTTLLKALAEA--LEAA-GKRVIGLAPTNKAAKE----LREKTGIE---AQTIHSFLYRIPNGDDE 86 (196)
T ss_dssp TCSEEEEEESTTSTHHHHHHHHHHH--HHHT-T--EEEEESSHHHHHH----HHHHHTS----EEEHHHHTTEECCEECC
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHH--HHhC-CCeEEEECCcHHHHHH----HHHhhCcc---hhhHHHHHhcCCccccc
Confidence 3467889999999999999988763 2222 2334444433322222 33333211 11111110000000 0
Q ss_pred ----cCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccH
Q 003037 201 ----ARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKM 243 (854)
Q Consensus 201 ----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 243 (854)
..++-+||+|++.--+...+..+...... .|+|+|+.--..
T Consensus 87 ~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 87 GRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp SSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred ccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 13345999999966555667777766554 577888766533
No 294
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.26 E-value=0.0088 Score=58.97 Aligned_cols=110 Identities=12% Similarity=0.133 Sum_probs=57.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCe
Q 003037 125 QVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIARKK 204 (854)
Q Consensus 125 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 204 (854)
.+|.|+|+.|+||||++..+... ........++.- .++. +...... ..+-.......+.....+.++..++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t~-e~~~--E~~~~~~-~~~i~q~~vg~~~~~~~~~i~~aLr~~p 75 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILTI-EDPI--EFVHESK-RSLINQREVGLDTLSFENALKAALRQDP 75 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEEE-cCCc--cccccCc-cceeeecccCCCccCHHHHHHHHhcCCc
Confidence 46899999999999999987763 332333344432 2211 1110000 0000000001112234556777777778
Q ss_pred EEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccHHH
Q 003037 205 FLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKMTV 245 (854)
Q Consensus 205 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v 245 (854)
=++++|++.+ .+....+..... .|..++.|+-...+
T Consensus 76 d~ii~gEird--~e~~~~~l~~a~---~G~~v~~t~Ha~~~ 111 (198)
T cd01131 76 DVILVGEMRD--LETIRLALTAAE---TGHLVMSTLHTNSA 111 (198)
T ss_pred CEEEEcCCCC--HHHHHHHHHHHH---cCCEEEEEecCCcH
Confidence 8999999943 344444333332 35556666654433
No 295
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.25 E-value=0.043 Score=52.88 Aligned_cols=22 Identities=50% Similarity=0.537 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHhc
Q 003037 126 VISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
++.++|++|+||||++..++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999888873
No 296
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.24 E-value=0.041 Score=60.64 Aligned_cols=87 Identities=18% Similarity=0.105 Sum_probs=49.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCc-cCHHHHHHHHHHHhcCCCC---CCccHHHHHHHHHH
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDP-FDEFRIAKAIIEALEGSTP---SLGELNSLLERIYA 198 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 198 (854)
.+.+|.++|.+|+||||+|..++.... ..-..+.-|++... ....+.++.+++.++.+.. ...+.........+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~--~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK--KKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 578999999999999999998887422 22123444444321 1234456666666654321 11232333333333
Q ss_pred HhcCCeEEEEEecC
Q 003037 199 SIARKKFLLVLDDV 212 (854)
Q Consensus 199 ~l~~k~~LlVlDdv 212 (854)
.+.+. -++|+|..
T Consensus 172 ~~~~~-DvVIIDTA 184 (437)
T PRK00771 172 KFKKA-DVIIVDTA 184 (437)
T ss_pred HhhcC-CEEEEECC
Confidence 33333 56888876
No 297
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.23 E-value=0.018 Score=61.69 Aligned_cols=135 Identities=13% Similarity=0.087 Sum_probs=74.1
Q ss_pred CccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHH
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAII 176 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 176 (854)
..++|+...+.++.+.+..... ...-|.|+|..|+||+++|+.+...... .-...+.|++... +...+-..+.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~~s~r--~~~pfv~v~c~~~-~~~~~~~~lf 78 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHYLSSR--WQGPFISLNCAAL-NENLLDSELF 78 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhCCc--cCCCeEEEeCCCC-CHHHHHHHHc
Confidence 4589999999999888776543 2345779999999999999999863111 1112344455442 2222222222
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCC-----------CCcEEEEecccH
Q 003037 177 EALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGL-----------RGSKILVTTRKM 243 (854)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~~ 243 (854)
..-...... .. ......+. ....=.|+|||+..-.......+...+..+. ...|||.||...
T Consensus 79 g~~~~~~~g-~~-~~~~g~l~---~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~ 151 (326)
T PRK11608 79 GHEAGAFTG-AQ-KRHPGRFE---RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNAD 151 (326)
T ss_pred cccccccCC-cc-cccCCchh---ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchh
Confidence 110000000 00 00001111 1223358899997766666777777765432 135888887643
No 298
>PRK05439 pantothenate kinase; Provisional
Probab=96.21 E-value=0.026 Score=59.08 Aligned_cols=96 Identities=15% Similarity=0.136 Sum_probs=52.6
Q ss_pred hHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccc--cCeeEEEEeCCccCHHHHHHHHHHHhc-
Q 003037 104 EEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINH--FEKRIWVCVSDPFDEFRIAKAIIEALE- 180 (854)
Q Consensus 104 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~~s~~~~~~~~~~~i~~~l~- 180 (854)
.....+...+..... .+..-+|+|.|.+|+||||+|+.+..- .... -..+.-++...-+.....+..- ..+.
T Consensus 68 ~~~~~~~~~fl~~~~--~~~~~iIgIaG~~gsGKSTla~~L~~~--l~~~~~~~~v~vi~~DdFy~~~~~l~~~-~l~~~ 142 (311)
T PRK05439 68 QRLQAALEQFLGKNG--QKVPFIIGIAGSVAVGKSTTARLLQAL--LSRWPEHPKVELVTTDGFLYPNAVLEER-GLMKR 142 (311)
T ss_pred HHHHHHHHHHhcccC--CCCCEEEEEECCCCCCHHHHHHHHHHH--HHhhCCCCceEEEeccccccCHHHHhhh-hcccc
Confidence 334444444443222 357889999999999999999888762 2221 1234455555544333332211 0111
Q ss_pred CCCCCCccHHHHHHHHHHHhcCCe
Q 003037 181 GSTPSLGELNSLLERIYASIARKK 204 (854)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~l~~k~ 204 (854)
...+..-|.+.+...+.....++.
T Consensus 143 kg~Pes~D~~~l~~~L~~Lk~G~~ 166 (311)
T PRK05439 143 KGFPESYDMRALLRFLSDVKSGKP 166 (311)
T ss_pred CCCcccccHHHHHHHHHHHHcCCC
Confidence 122344566667766666666554
No 299
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.21 E-value=0.043 Score=62.73 Aligned_cols=133 Identities=14% Similarity=0.148 Sum_probs=77.0
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAI 175 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 175 (854)
...++|+...++++.+.+..... ...-|.|+|..|+|||++|+.+.+.... .-...+.|++....+ ..+..
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~s~r--~~~p~v~v~c~~~~~--~~~e~- 256 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAASPR--ADKPLVYLNCAALPE--SLAES- 256 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCCc--CCCCeEEEEcccCCh--HHHHH-
Confidence 46799999999999888876543 3446789999999999999999884221 112334555554321 22221
Q ss_pred HHHhcCCCCC---CccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCC-----------CCcEEEEecc
Q 003037 176 IEALEGSTPS---LGELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGL-----------RGSKILVTTR 241 (854)
Q Consensus 176 ~~~l~~~~~~---~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR 241 (854)
.+.+.... .... .....+ + ....=.|+||++..-.......+...+..+. ...|||.||.
T Consensus 257 --~lfG~~~g~~~ga~~-~~~g~~-~--~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~ 330 (509)
T PRK05022 257 --ELFGHVKGAFTGAIS-NRSGKF-E--LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATN 330 (509)
T ss_pred --HhcCccccccCCCcc-cCCcch-h--hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecC
Confidence 22221100 0000 000011 1 1122347899997766666777777765432 2458888886
Q ss_pred cH
Q 003037 242 KM 243 (854)
Q Consensus 242 ~~ 243 (854)
..
T Consensus 331 ~~ 332 (509)
T PRK05022 331 RD 332 (509)
T ss_pred CC
Confidence 43
No 300
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.21 E-value=0.03 Score=59.67 Aligned_cols=59 Identities=20% Similarity=0.126 Sum_probs=42.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhcccc----ccccCeeEEEEeCCccCHHHHHHHHHHHhcC
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNNNDV----INHFEKRIWVCVSDPFDEFRIAKAIIEALEG 181 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~----~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 181 (854)
..-+++-|+|.+|+|||+|+.+++-.... .+.-..++|++....|+++++.+ +++.++.
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 46788999999999999999877532222 11224789999999888887654 5566544
No 301
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.18 E-value=0.032 Score=61.96 Aligned_cols=115 Identities=23% Similarity=0.304 Sum_probs=65.4
Q ss_pred CeEEEEEEecCCCcHHH-HHHHHHhccccccccCeeEEEEeCCc--cCHHHHHHHHHHHhcCCCCC----------C---
Q 003037 123 AVQVISLVGMGGIGKTT-LAQFAYNNNDVINHFEKRIWVCVSDP--FDEFRIAKAIIEALEGSTPS----------L--- 186 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTt-La~~v~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~----------~--- 186 (854)
...||.|+|..|.|||| ||+.+|.+ .|...--|-+.++ .....+.+.+.+.++..-.. .
T Consensus 370 ~n~vvvivgETGSGKTTQl~QyL~ed-----GY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~ 444 (1042)
T KOG0924|consen 370 ENQVVVIVGETGSGKTTQLAQYLYED-----GYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSE 444 (1042)
T ss_pred hCcEEEEEecCCCCchhhhHHHHHhc-----ccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCC
Confidence 56789999999999987 66777774 2211113333443 33455677777777543110 0
Q ss_pred -------ccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHh---hcCCCCCcEEEEecccH
Q 003037 187 -------GELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRC---LKNGLRGSKILVTTRKM 243 (854)
Q Consensus 187 -------~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~---l~~~~~gs~ilvTtR~~ 243 (854)
.+.--+.+.|.+..-.|--.||+|.++... -+-+.+... .......-|+||||-.-
T Consensus 445 ~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERs-lNtDilfGllk~~larRrdlKliVtSATm 510 (1042)
T KOG0924|consen 445 DTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERS-LNTDILFGLLKKVLARRRDLKLIVTSATM 510 (1042)
T ss_pred ceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcc-cchHHHHHHHHHHHHhhccceEEEeeccc
Confidence 111123344444445667799999996532 122222222 22334577999998743
No 302
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.15 E-value=0.038 Score=53.99 Aligned_cols=44 Identities=23% Similarity=0.224 Sum_probs=30.3
Q ss_pred EEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHH
Q 003037 127 ISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKA 174 (854)
Q Consensus 127 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 174 (854)
+.|.|.+|+|||+||.++... ....=..++|++... +...+...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~--~~~~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYA--GLARGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCC--CHHHHHHH
Confidence 679999999999999887664 222234677887755 34444444
No 303
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.13 E-value=0.04 Score=56.28 Aligned_cols=88 Identities=17% Similarity=0.134 Sum_probs=52.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhcccccccc-CeeEEEEeCCcc-CHHHHHHHHHHHhcC-------CCCCCccHHH--
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHF-EKRIWVCVSDPF-DEFRIAKAIIEALEG-------STPSLGELNS-- 191 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~s~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~-- 191 (854)
+-.-++|.|..|+||||||+.+++. .+.+| +.++++-+.+.. ++.++...+...=.. ...+......
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 3456889999999999999999985 44445 355566676654 344555555432111 0111111111
Q ss_pred ---HHHHHHHHh---cCCeEEEEEecC
Q 003037 192 ---LLERIYASI---ARKKFLLVLDDV 212 (854)
Q Consensus 192 ---~~~~l~~~l---~~k~~LlVlDdv 212 (854)
..-.+.+++ +++.+|+++||+
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 112233444 388999999998
No 304
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.13 E-value=0.024 Score=62.91 Aligned_cols=89 Identities=19% Similarity=0.085 Sum_probs=48.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCcc-CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPF-DEFRIAKAIIEALEGSTPSLGELNSLLERIYASIA 201 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 201 (854)
...+++|+|.+|+||||++..++...........+..++..... .....++...+.++.......+...+...+.+ +.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~-l~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER-LR 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHH-hc
Confidence 46799999999999999998887632212112345555543211 12233333333343322222333444444433 33
Q ss_pred CCeEEEEEecCC
Q 003037 202 RKKFLLVLDDVW 213 (854)
Q Consensus 202 ~k~~LlVlDdv~ 213 (854)
..=+|++|..-
T Consensus 428 -~~DLVLIDTaG 438 (559)
T PRK12727 428 -DYKLVLIDTAG 438 (559)
T ss_pred -cCCEEEecCCC
Confidence 35588889873
No 305
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.11 Score=60.00 Aligned_cols=184 Identities=15% Similarity=0.140 Sum_probs=103.9
Q ss_pred CCccccchhH---HHHHHHHhcccccc---cCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHH
Q 003037 96 VSEVRGRDEE---KNTLKSKLLCESSE---QQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEF 169 (854)
Q Consensus 96 ~~~~vGr~~~---~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 169 (854)
-.++.|-++. ++++++.|..+..- +..-++=+.|+|++|.|||-||++++-.. .+-|++++..
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-------gVPF~svSGS---- 378 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSVSGS---- 378 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-------CCceeeechH----
Confidence 3467887765 45555666554321 13456778999999999999999999842 2446666653
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHHh-cCCeEEEEEecCCCc---------------ChhhHHHHHHhhcCCCCC
Q 003037 170 RIAKAIIEALEGSTPSLGELNSLLERIYASI-ARKKFLLVLDDVWTE---------------DYNKWETFQRCLKNGLRG 233 (854)
Q Consensus 170 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~---------------~~~~~~~l~~~l~~~~~g 233 (854)
+..+.+.+.. ......+.... ...++++.+|++..- ....+.++..-+.-...+
T Consensus 379 ----EFvE~~~g~~------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~ 448 (774)
T KOG0731|consen 379 ----EFVEMFVGVG------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS 448 (774)
T ss_pred ----HHHHHhcccc------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC
Confidence 2223332211 11222233222 356888888876320 012233444444433322
Q ss_pred c--EEEEecccHHHHhh--ccC---cceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHH
Q 003037 234 S--KILVTTRKMTVAQM--MQS---NDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAK 304 (854)
Q Consensus 234 s--~ilvTtR~~~v~~~--~~~---~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~ 304 (854)
. -++-+|...++... +.. +..+.+..=+...-.++|..++..-.. ..+..++++ |+...-|++=|..
T Consensus 449 ~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~---~~e~~dl~~-~a~~t~gf~gadl 522 (774)
T KOG0731|consen 449 KGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL---DDEDVDLSK-LASLTPGFSGADL 522 (774)
T ss_pred CcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC---CcchhhHHH-HHhcCCCCcHHHH
Confidence 2 33445554444332 122 456777777788888899888743222 234455666 8888989886653
No 306
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.11 E-value=0.034 Score=53.57 Aligned_cols=118 Identities=15% Similarity=0.176 Sum_probs=60.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCC--ccCHHHHHHHHHHHhcC--CCCC----------Ccc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSD--PFDEFRIAKAIIEALEG--STPS----------LGE 188 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~--~~~~~~~~~~i~~~l~~--~~~~----------~~~ 188 (854)
.-.+++|+|..|.|||||++.++.. .....+.+++.-.. ....... ...++- +... ...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~---~~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~q~~~~~~~tv~~~lLS~ 99 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGL---LRPTSGRVRLDGADISQWDPNEL----GDHVGYLPQDDELFSGSIAENILSG 99 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc---cCCCCCeEEECCEEcccCCHHHH----HhheEEECCCCccccCcHHHHCcCH
Confidence 3458999999999999999999873 12223333332100 0111111 111110 0000 011
Q ss_pred HHHHHHHHHHHhcCCeEEEEEecCCC-cChhhHHHHHHhhcCC-CCCcEEEEecccHHHHh
Q 003037 189 LNSLLERIYASIARKKFLLVLDDVWT-EDYNKWETFQRCLKNG-LRGSKILVTTRKMTVAQ 247 (854)
Q Consensus 189 ~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~ 247 (854)
-+.-.-.+.+.+..++-++++|+... -+......+...+... ..|..||++|.+.....
T Consensus 100 G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 100 GQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 11222334455667778999998743 2333344444444321 23667888887776553
No 307
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.10 E-value=0.031 Score=66.63 Aligned_cols=136 Identities=15% Similarity=0.143 Sum_probs=76.0
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAI 175 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 175 (854)
...++|+...+..+.+.+..... ...-|.|+|..|+|||++|+.+++..... -...+.+++.... ...+-..+
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~----~~~pVLI~GE~GTGK~~lA~~ih~~s~r~--~~~~v~i~c~~~~-~~~~~~~l 447 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQ----SDSTVLILGETGTGKELIARAIHNLSGRN--NRRMVKMNCAAMP-AGLLESDL 447 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHhcCCC--CCCeEEEecccCC-hhHhhhhh
Confidence 34799999999988777764432 33457899999999999999998742211 1233445544322 11111111
Q ss_pred HHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCC-----------CCcEEEEecccH
Q 003037 176 IEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGL-----------RGSKILVTTRKM 243 (854)
Q Consensus 176 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~~ 243 (854)
.....+.... .. ......+. ....=.|+|||+..-.......+...+.... .+.|||.||...
T Consensus 448 fg~~~~~~~g-~~-~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 448 FGHERGAFTG-AS-AQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred cCcccccccc-cc-cchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 1111111000 00 01111121 1223479999997766666677777765431 345888888643
No 308
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.09 E-value=0.016 Score=60.83 Aligned_cols=26 Identities=15% Similarity=0.376 Sum_probs=24.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
..++.++|||++|+|||.+|+++++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999994
No 309
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.07 E-value=0.022 Score=57.08 Aligned_cols=73 Identities=12% Similarity=0.070 Sum_probs=40.3
Q ss_pred EEEEEecCCCcHHHHHHHHHhcccccc-cc-CeeEEEEeCCccCHHHHHHHHHHHhc-CCCCCCccHHHHHHHHHHHhc
Q 003037 126 VISLVGMGGIGKTTLAQFAYNNNDVIN-HF-EKRIWVCVSDPFDEFRIAKAIIEALE-GSTPSLGELNSLLERIYASIA 201 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~~~~~~~-~f-~~~~wv~~s~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~~~~l~~~l~ 201 (854)
+|+|.|..|+||||+|+.+... ... .. ..+..++....+.....+.... .+. ...+...+.+.+...+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~--l~~~~~~~~v~vi~~D~f~~~~~~~~~~~-~~~~~g~p~~~d~~~l~~~L~~l~~ 76 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL--LSRWPDHPNVELITTDGFLYPNKELIERG-LMDRKGFPESYDMEALLKFLKDIKS 76 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH--HhhcCCCCcEEEEecCcccCcHHHHHHhh-hhhcCCCcccCCHHHHHHHHHHHHC
Confidence 5899999999999999999873 221 01 2344555555443333333221 111 112344556666655555544
No 310
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.06 E-value=0.079 Score=55.30 Aligned_cols=54 Identities=19% Similarity=0.145 Sum_probs=37.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEAL 179 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 179 (854)
.-.++.|.|.+|+||||++.+++.... .++-..++|+++.. +..++...+...+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~~~~ 82 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLLGQY 82 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHHHHH
Confidence 455888999999999999988876421 22234688988766 4566666665554
No 311
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.05 E-value=0.026 Score=58.63 Aligned_cols=80 Identities=15% Similarity=0.099 Sum_probs=44.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhcccccccc--CeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHH
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNNNDVINHF--EKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYAS 199 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 199 (854)
..+.+|+|.|..|+||||+|+.+..- ..... ..+..++....+.........-..-....+...+.+.+...+...
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~l--l~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~L 137 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQAL--LSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDL 137 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH--HhhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHH
Confidence 46789999999999999999877552 22111 134455555444333333221100001123445666666666665
Q ss_pred hcCC
Q 003037 200 IARK 203 (854)
Q Consensus 200 l~~k 203 (854)
..++
T Consensus 138 k~g~ 141 (290)
T TIGR00554 138 KSGK 141 (290)
T ss_pred HCCC
Confidence 5544
No 312
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.0094 Score=66.78 Aligned_cols=71 Identities=18% Similarity=0.234 Sum_probs=50.8
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRI 171 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~ 171 (854)
+...+|.++..++|.+.+.-..-.+.-+-++++.+|++|+|||.+|+.+++- ....| +-++++.-.|..+|
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~A--LnRkF---fRfSvGG~tDvAeI 480 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARA--LNRKF---FRFSVGGMTDVAEI 480 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHH--hCCce---EEEeccccccHHhh
Confidence 4568999999999999875332111346789999999999999999999983 44444 23456655555443
No 313
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.05 E-value=0.037 Score=58.69 Aligned_cols=58 Identities=19% Similarity=0.154 Sum_probs=40.3
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhccccc---c-ccCeeEEEEeCCccCHHHHHHHHHHHhc
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNNNDVI---N-HFEKRIWVCVSDPFDEFRIAKAIIEALE 180 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~-~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 180 (854)
....++.|+|.+|+|||||+..++...... + .-..++|++....++..+ +.++++.++
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~ 155 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYG 155 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcC
Confidence 367899999999999999998876532121 1 123578999888777775 344555543
No 314
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.04 E-value=0.02 Score=56.29 Aligned_cols=79 Identities=20% Similarity=0.238 Sum_probs=44.9
Q ss_pred EEEEEecCCCcHHHHHHHHHhcccccc-ccC---eeEEEEeCCccCHHHHHHHHHHHh----cCCCCCCccHHHHHHHHH
Q 003037 126 VISLVGMGGIGKTTLAQFAYNNNDVIN-HFE---KRIWVCVSDPFDEFRIAKAIIEAL----EGSTPSLGELNSLLERIY 197 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~~~~~~~-~f~---~~~wv~~s~~~~~~~~~~~i~~~l----~~~~~~~~~~~~~~~~l~ 197 (854)
||+|.|.+|+||||+|+.+... ... ... ....++....+........ -... .-..+...+.+.+.+.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~--L~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQI--LNKRGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH--HTTCTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH--hCccCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHH
Confidence 6999999999999999999883 221 122 2334443333322222222 1111 112334567777777777
Q ss_pred HHhcCCeEEE
Q 003037 198 ASIARKKFLL 207 (854)
Q Consensus 198 ~~l~~k~~Ll 207 (854)
...+++.+-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 7666665443
No 315
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.03 E-value=0.0026 Score=37.44 Aligned_cols=19 Identities=21% Similarity=0.466 Sum_probs=9.2
Q ss_pred CceeeecCCCCcccchhhh
Q 003037 541 LRFLKLVWLDIEELPETCC 559 (854)
Q Consensus 541 L~~L~L~~~~i~~lP~~i~ 559 (854)
|++|+|++|.++.+|++++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4455555555445554433
No 316
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.03 E-value=0.034 Score=53.60 Aligned_cols=119 Identities=21% Similarity=0.188 Sum_probs=62.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcC--CCC---C---------Ccc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEG--STP---S---------LGE 188 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~--~~~---~---------~~~ 188 (854)
.-.+++|+|..|.|||||++.++... ....+.+++.-....+.. ..+...++- +.. . ...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~ 98 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSG 98 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCH
Confidence 44689999999999999999998732 223344443211000000 011111110 000 0 011
Q ss_pred HHHHHHHHHHHhcCCeEEEEEecCCC-cChhhHHHHHHhhcCC-CCCcEEEEecccHHHHh
Q 003037 189 LNSLLERIYASIARKKFLLVLDDVWT-EDYNKWETFQRCLKNG-LRGSKILVTTRKMTVAQ 247 (854)
Q Consensus 189 ~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~ 247 (854)
-+.-.-.+.+.+..++=++++|+.-. -|....+.+...+... ..|..||++|.+.....
T Consensus 99 G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 99 GMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 11222345566778889999998633 2334444454444432 23667888888766544
No 317
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.02 E-value=0.041 Score=58.68 Aligned_cols=59 Identities=17% Similarity=0.135 Sum_probs=42.2
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhcccccc----ccCeeEEEEeCCccCHHHHHHHHHHHhcC
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNNNDVIN----HFEKRIWVCVSDPFDEFRIAKAIIEALEG 181 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 181 (854)
..-.++-|+|.+|+|||+||..++-...... .-..++|++....++++++ .+|++.++.
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~ 183 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGL 183 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCC
Confidence 3578899999999999999987764322211 1136899999998888765 455666543
No 318
>PRK08233 hypothetical protein; Provisional
Probab=95.99 E-value=0.024 Score=55.18 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhc
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
..+|+|.|.+|+||||||+.++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 578999999999999999999874
No 319
>PHA02244 ATPase-like protein
Probab=95.98 E-value=0.039 Score=58.52 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHhc
Q 003037 126 VISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
-|.|+|++|+|||+||++++..
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999884
No 320
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.96 E-value=0.09 Score=56.02 Aligned_cols=91 Identities=15% Similarity=0.060 Sum_probs=55.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCcc-CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHh
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPF-DEFRIAKAIIEALEGSTPSLGELNSLLERIYASI 200 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 200 (854)
.+.+++.|+|+.|+||||++..++... ...-..+.+|+..... .....++..++.++.......+.+++...+...-
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l--~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQL--LKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 357899999999999999998887642 2222356667665432 2344556666666544322345555555444332
Q ss_pred c-CCeEEEEEecCCC
Q 003037 201 A-RKKFLLVLDDVWT 214 (854)
Q Consensus 201 ~-~k~~LlVlDdv~~ 214 (854)
. +..=++++|-.-.
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 1 3456888898743
No 321
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.93 E-value=0.11 Score=51.40 Aligned_cols=57 Identities=16% Similarity=0.160 Sum_probs=36.8
Q ss_pred HHHHHHHhcCCeEEEEEecC-CCcChhhHHHHHHhhcCC--CCCcEEEEecccHHHHhhc
Q 003037 193 LERIYASIARKKFLLVLDDV-WTEDYNKWETFQRCLKNG--LRGSKILVTTRKMTVAQMM 249 (854)
Q Consensus 193 ~~~l~~~l~~k~~LlVlDdv-~~~~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~~~ 249 (854)
.-.+.+.|...+-+|+.|+- -+-|...-+.+...+... ..|..||+.|-+..++..+
T Consensus 150 RVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~ 209 (226)
T COG1136 150 RVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYA 209 (226)
T ss_pred HHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhC
Confidence 34566777888889999973 112233334444444432 3577899999999998854
No 322
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.93 E-value=0.19 Score=53.27 Aligned_cols=49 Identities=22% Similarity=0.111 Sum_probs=33.0
Q ss_pred eEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHH
Q 003037 254 VILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAA 303 (854)
Q Consensus 254 ~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai 303 (854)
++++++++.+|+..++.-+.-.+-- ......+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l-~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWL-RSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCcc-ccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999877643221 111233445566777779998543
No 323
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.93 E-value=0.088 Score=53.38 Aligned_cols=114 Identities=16% Similarity=0.155 Sum_probs=63.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCC-------------------
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGST------------------- 183 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~------------------- 183 (854)
.-.++.|.|.+|+||||+|.++... ....-..++|++.... ...+... +++++...
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~--~~~~g~~~~~is~e~~--~~~i~~~-~~~~g~~~~~~~~~~~l~i~d~~~~~~ 93 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYK--GLRDGDPVIYVTTEES--RESIIRQ-AAQFGMDFEKAIEEGKLVIIDALMKEK 93 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHH--HHhcCCeEEEEEccCC--HHHHHHH-HHHhCCCHHHHhhcCCEEEEEcccccc
Confidence 5678999999999999999887653 1123357788887543 3333332 22222100
Q ss_pred -----CCCccHHHHHHHHHHHhcC---CeEEEEEecCCC---cChhhHHHHHHhhcC--CCCCcEEEEecc
Q 003037 184 -----PSLGELNSLLERIYASIAR---KKFLLVLDDVWT---EDYNKWETFQRCLKN--GLRGSKILVTTR 241 (854)
Q Consensus 184 -----~~~~~~~~~~~~l~~~l~~---k~~LlVlDdv~~---~~~~~~~~l~~~l~~--~~~gs~ilvTtR 241 (854)
....+.+++...+++..+. +.-.+|+|.+.. ++......+...+.. ...|..+++|+.
T Consensus 94 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~ 164 (229)
T TIGR03881 94 EDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQ 164 (229)
T ss_pred ccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 0113456666666665543 345889998632 222222222111111 235778888876
No 324
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.92 E-value=0.067 Score=54.06 Aligned_cols=49 Identities=20% Similarity=0.123 Sum_probs=32.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHH
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAI 175 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 175 (854)
...++.|.|.+|+||||+|.+++... .+.. ..+++++... +..++++.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 45689999999999999986655431 1222 3566776443 455666655
No 325
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.92 E-value=0.054 Score=51.23 Aligned_cols=116 Identities=18% Similarity=0.113 Sum_probs=62.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhccccccccCeeE---EEEeCCccCHHHHHHHHHHHh-----cCC----CCCC-cc--
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRI---WVCVSDPFDEFRIAKAIIEAL-----EGS----TPSL-GE-- 188 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~---wv~~s~~~~~~~~~~~i~~~l-----~~~----~~~~-~~-- 188 (854)
...|-|++..|.||||.|..++-. ..++=-.++ |+.-.........+..+ .+ +.. ..+. .+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~r--a~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~ 80 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALR--ALGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTA 80 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHH--HHHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHH
Confidence 467888999999999999666553 222211222 33333223333344332 11 110 0000 11
Q ss_pred -HHHHHHHHHHHhcC-CeEEEEEecCCC---cChhhHHHHHHhhcCCCCCcEEEEecccH
Q 003037 189 -LNSLLERIYASIAR-KKFLLVLDDVWT---EDYNKWETFQRCLKNGLRGSKILVTTRKM 243 (854)
Q Consensus 189 -~~~~~~~l~~~l~~-k~~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 243 (854)
.....+..++.+.. +-=++|||.+-. ...-..+.+...+...+.+..||+|-|+.
T Consensus 81 ~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 81 IAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 12223334444444 445999999721 12234456777777777788999999975
No 326
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.91 E-value=0.085 Score=58.07 Aligned_cols=90 Identities=17% Similarity=0.097 Sum_probs=47.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCcc-CHHHHHHHHHHHhcCCC---CCCccHHHHHHHHHH
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPF-DEFRIAKAIIEALEGST---PSLGELNSLLERIYA 198 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~~ 198 (854)
.+.++.++|.+|+||||+|..++.....+.. ..++-|++.... ...+.++...+.++.+. ....+...+.....+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g-~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQG-KKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCC-CeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 4789999999999999999887763111111 234444443211 22333444555554331 112233344333333
Q ss_pred HhcCCeE-EEEEecCC
Q 003037 199 SIARKKF-LLVLDDVW 213 (854)
Q Consensus 199 ~l~~k~~-LlVlDdv~ 213 (854)
.+..+.+ ++|+|-.-
T Consensus 177 ~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 177 YAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHhcCCCEEEEeCCC
Confidence 3434444 77777663
No 327
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.91 E-value=0.27 Score=51.64 Aligned_cols=62 Identities=10% Similarity=0.067 Sum_probs=40.2
Q ss_pred CccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHH
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRI 171 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~ 171 (854)
+.++=..+....+..++.. .+.|.|.|.+|+||||+|+.++.. .... .+.|..+...+..++
T Consensus 45 ~~y~f~~~~~~~vl~~l~~--------~~~ilL~G~pGtGKTtla~~lA~~--l~~~---~~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 45 PAYLFDKATTKAICAGFAY--------DRRVMVQGYHGTGKSTHIEQIAAR--LNWP---CVRVNLDSHVSRIDL 106 (327)
T ss_pred CCccCCHHHHHHHHHHHhc--------CCcEEEEeCCCChHHHHHHHHHHH--HCCC---eEEEEecCCCChhhc
Confidence 3455555566667777752 234889999999999999999883 3222 235555555444333
No 328
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.91 E-value=0.056 Score=55.06 Aligned_cols=50 Identities=22% Similarity=0.307 Sum_probs=35.9
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHH
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAI 175 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 175 (854)
..-+++.|.|.+|+|||++|.++... ....-+.++||+... ++.++.+.+
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~--~~~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEEEeeC--CHHHHHHHH
Confidence 36789999999999999999876552 112345788988765 455555553
No 329
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.90 E-value=0.0043 Score=61.32 Aligned_cols=88 Identities=25% Similarity=0.317 Sum_probs=58.4
Q ss_pred hcCCCcccEEEecCCCCccccccccccccccccccCCCceeeecCCCCcc---cchhhhcCCCCcEEeecCccccccccc
Q 003037 504 FDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIEE---LPETCCELFNVQTLEVLDCRSFRRLPQ 580 (854)
Q Consensus 504 ~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~~---lP~~i~~L~~L~~L~l~~~~~l~~lp~ 580 (854)
+..|++|+.|.++.|.. +....++-...++++|++|++++|.|.- ++ .+.++.||.+|++.+|. ...+-.
T Consensus 61 ~P~Lp~LkkL~lsdn~~-----~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~-~~~l~d 133 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYR-----RVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCS-VTNLDD 133 (260)
T ss_pred CCCcchhhhhcccCCcc-----cccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCC-cccccc
Confidence 45678888888888841 1144565556677889999999988663 22 35677888899999887 333321
Q ss_pred ----ccccCCCCcccCceeecC
Q 003037 581 ----GFGKLVNLRNLSKFIVSR 598 (854)
Q Consensus 581 ----~i~~L~~L~~L~~~~~~~ 598 (854)
.+.-|++|++|..+.+..
T Consensus 134 yre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 134 YREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred HHHHHHHHhhhhccccccccCC
Confidence 134567777776655543
No 330
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.89 E-value=0.036 Score=56.90 Aligned_cols=89 Identities=25% Similarity=0.184 Sum_probs=56.8
Q ss_pred CCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHH-hcC---C-CCCCccHHHHHHH
Q 003037 121 QNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEA-LEG---S-TPSLGELNSLLER 195 (854)
Q Consensus 121 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~-l~~---~-~~~~~~~~~~~~~ 195 (854)
-+.-+++=|+|+.|.||||+|.+++-. .+..-..++|++....++++.+. +++.. +.. . .........+...
T Consensus 57 l~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~-~l~~~~~d~l~v~~~~~~e~q~~i~~~ 133 (279)
T COG0468 57 LPRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAK-QLGVDLLDNLLVSQPDTGEQQLEIAEK 133 (279)
T ss_pred cccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHH-HHHHhhhcceeEecCCCHHHHHHHHHH
Confidence 457899999999999999999776653 33344488999999988887653 33333 221 1 1111222233344
Q ss_pred HHHHhcCCeEEEEEecC
Q 003037 196 IYASIARKKFLLVLDDV 212 (854)
Q Consensus 196 l~~~l~~k~~LlVlDdv 212 (854)
+......+--|+|+|.+
T Consensus 134 ~~~~~~~~i~LvVVDSv 150 (279)
T COG0468 134 LARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHHhccCCCCEEEEecC
Confidence 44443444668999988
No 331
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.87 E-value=0.17 Score=50.32 Aligned_cols=53 Identities=19% Similarity=0.317 Sum_probs=31.9
Q ss_pred HHHHHhcCCeEEEEEecCCC-cChhhHHHHHHhhcCCCCCcEEEEecccHHHHh
Q 003037 195 RIYASIARKKFLLVLDDVWT-EDYNKWETFQRCLKNGLRGSKILVTTRKMTVAQ 247 (854)
Q Consensus 195 ~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 247 (854)
.+.+.+..++=++++|+... -+....+.+...+.....|..||++|.+.....
T Consensus 135 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~ 188 (207)
T cd03369 135 CLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTII 188 (207)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh
Confidence 34455566788999998743 233444555555544334667777777766553
No 332
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.83 E-value=0.041 Score=53.27 Aligned_cols=118 Identities=18% Similarity=0.136 Sum_probs=60.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEE---eCCcc-CHHHHHHHHHHHhcC--CCC---C--------
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVC---VSDPF-DEFRIAKAIIEALEG--STP---S-------- 185 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~---~s~~~-~~~~~~~~i~~~l~~--~~~---~-------- 185 (854)
.-.+++|+|..|.|||||++.++.. .....+.+.+. ++... .... ..+.+.- +.+ .
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~---~~~~~G~i~~~g~~~~~~~~~~~~----~~~~i~~~~q~~~~~~~~t~~~~l 97 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGL---EEPDSGSILIDGEDLTDLEDELPP----LRRRIGMVFQDFALFPHLTVLENI 97 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC---CCCCceEEEECCEEccccchhHHH----HhhcEEEEecCCccCCCCCHHHhe
Confidence 4568999999999999999999863 12233444332 11100 0111 1111110 000 0
Q ss_pred ---CccHHHHHHHHHHHhcCCeEEEEEecCCC-cChhhHHHHHHhhcCCC-C-CcEEEEecccHHHHh
Q 003037 186 ---LGELNSLLERIYASIARKKFLLVLDDVWT-EDYNKWETFQRCLKNGL-R-GSKILVTTRKMTVAQ 247 (854)
Q Consensus 186 ---~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~-~-gs~ilvTtR~~~v~~ 247 (854)
...-+.-.-.+.+.+..++=++++|+--. -|......+...+.... . |..||++|.+.....
T Consensus 98 ~~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 98 ALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAA 165 (178)
T ss_pred eecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 00112222334566677888999998633 23344444555444321 2 566788877765544
No 333
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.83 E-value=0.038 Score=55.98 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=23.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.+..+++|.|..|+|||||++.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999873
No 334
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.82 E-value=0.0083 Score=54.70 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=21.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhc
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.--|+|.|++|+||||+++.+.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHH
Confidence 345889999999999999999984
No 335
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.81 E-value=0.0095 Score=56.93 Aligned_cols=91 Identities=20% Similarity=0.225 Sum_probs=53.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhccccc-cccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcC
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNNNDVI-NHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIAR 202 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 202 (854)
..++.+.|+.|+|||.||+.+++. .. +.....+-++.+...+.... ..++..+....+. ... . .
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~--l~~~~~~~~~~~d~s~~~~~~~~-~~~~~~l~~~~~~--~v~-------~---~ 67 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAEL--LFVGSERPLIRIDMSEYSEGDDV-ESSVSKLLGSPPG--YVG-------A---E 67 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHH--HT-SSCCEEEEEEGGGHCSHHHC-SCHCHHHHHHTTC--HHH-------H---H
T ss_pred EEEEEEECCCCCCHHHHHHHHHHH--hccCCccchHHHhhhcccccchH-Hhhhhhhhhcccc--eee-------c---c
Confidence 567899999999999999999883 33 34445666666654431111 1111111111111 100 0 0
Q ss_pred CeEEEEEecCCCcCh-----------hhHHHHHHhhcC
Q 003037 203 KKFLLVLDDVWTEDY-----------NKWETFQRCLKN 229 (854)
Q Consensus 203 k~~LlVlDdv~~~~~-----------~~~~~l~~~l~~ 229 (854)
..-+|+||++..... ..|..|...+..
T Consensus 68 ~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~ 105 (171)
T PF07724_consen 68 EGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEG 105 (171)
T ss_dssp HHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcc
Confidence 111999999977666 668888887753
No 336
>PRK10867 signal recognition particle protein; Provisional
Probab=95.80 E-value=0.11 Score=57.14 Aligned_cols=24 Identities=42% Similarity=0.472 Sum_probs=21.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.+.+|.++|.+|+||||.|..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999998877766
No 337
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.80 E-value=0.067 Score=57.15 Aligned_cols=58 Identities=22% Similarity=0.270 Sum_probs=41.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhccccccc----cCeeEEEEeCCccCHHHHHHHHHHHhc
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNNNDVINH----FEKRIWVCVSDPFDEFRIAKAIIEALE 180 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~s~~~~~~~~~~~i~~~l~ 180 (854)
....++-|+|.+|+|||++|.+++-....... =..++||+....+++.++. ++++.++
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g 161 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALG 161 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcC
Confidence 35788999999999999999888754222111 1478999999888877654 3444443
No 338
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.79 E-value=0.11 Score=53.12 Aligned_cols=21 Identities=38% Similarity=0.453 Sum_probs=18.3
Q ss_pred EEEEEecCCCcHHHHHHHHHh
Q 003037 126 VISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~ 146 (854)
+..|+|+||+|||+||..++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999987765
No 339
>PTZ00301 uridine kinase; Provisional
Probab=95.79 E-value=0.015 Score=57.55 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
...+|+|.|.+|+||||||+.+.+.
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~ 26 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSE 26 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHH
Confidence 3578999999999999999988763
No 340
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.77 E-value=0.071 Score=56.84 Aligned_cols=58 Identities=21% Similarity=0.225 Sum_probs=41.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhcccccc----ccCeeEEEEeCCccCHHHHHHHHHHHhc
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNNNDVIN----HFEKRIWVCVSDPFDEFRIAKAIIEALE 180 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 180 (854)
....++-|+|.+|+|||+++.+++....... .-..++||+....++.+++. ++++.++
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 3578899999999999999988876422211 11378999998888877654 4455443
No 341
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.77 E-value=0.023 Score=51.90 Aligned_cols=44 Identities=27% Similarity=0.254 Sum_probs=32.1
Q ss_pred EEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCC
Q 003037 126 VISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGS 182 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 182 (854)
+|.|.|++|+||||+|+.++++.- -. .| +.-.++++|++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g--l~-----~v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG--LK-----LV------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC--Cc-----ee------eccHHHHHHHHHcCCC
Confidence 689999999999999999998421 11 12 2335788888877653
No 342
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.74 E-value=0.012 Score=61.55 Aligned_cols=51 Identities=22% Similarity=0.292 Sum_probs=45.4
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHh
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
...|+|.++.++++++.+...+.+.+.+-+++.++|+.|.||||||..+.+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999877665567889999999999999999998877
No 343
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.73 E-value=0.053 Score=56.18 Aligned_cols=89 Identities=19% Similarity=0.200 Sum_probs=50.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCH--HHHHHHHHHHhcCCC---CCCccHHH-HHHH
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDE--FRIAKAIIEALEGST---PSLGELNS-LLER 195 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~---~~~~~~~~-~~~~ 195 (854)
.+.+++.++|++|+||||++..++.. ....-..+.+++... +.. ..-+...++..+... ....+... ....
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 35789999999999999999888764 222223555666543 222 233444555554321 11122222 2233
Q ss_pred HHHHhcCCeEEEEEecCC
Q 003037 196 IYASIARKKFLLVLDDVW 213 (854)
Q Consensus 196 l~~~l~~k~~LlVlDdv~ 213 (854)
+........=++++|-.-
T Consensus 147 l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 444344445688889763
No 344
>PRK07667 uridine kinase; Provisional
Probab=95.69 E-value=0.014 Score=57.33 Aligned_cols=38 Identities=21% Similarity=0.240 Sum_probs=29.5
Q ss_pred HHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 106 KNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 106 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.+.|.+.+.... +...+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 455666665433 35589999999999999999999874
No 345
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.67 E-value=0.026 Score=60.73 Aligned_cols=81 Identities=20% Similarity=0.231 Sum_probs=49.3
Q ss_pred CccccchhHHHHHHHHhccccc--------ccCCCeEEEEEEecCCCcHHHHHHHHHhcccccccc---CeeEEEEeCC-
Q 003037 97 SEVRGRDEEKNTLKSKLLCESS--------EQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHF---EKRIWVCVSD- 164 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~--------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~s~- 164 (854)
..+||.++.++.+...+...-. ...-.++.|.++|++|+|||++|+.++.. ....| +...++..+.
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~--l~~~fi~vdat~~~e~g~v 89 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGYV 89 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH--hCCeEEEeecceeecCCcc
Confidence 4689999998888776653200 00113467889999999999999999884 33333 2222222111
Q ss_pred ccCHHHHHHHHHHHh
Q 003037 165 PFDEFRIAKAIIEAL 179 (854)
Q Consensus 165 ~~~~~~~~~~i~~~l 179 (854)
..+.+.+++.+.+..
T Consensus 90 G~dvE~i~r~l~e~A 104 (441)
T TIGR00390 90 GRDVESMVRDLTDAA 104 (441)
T ss_pred cCCHHHHHHHHHHHH
Confidence 225666666655443
No 346
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=95.66 E-value=0.51 Score=49.05 Aligned_cols=70 Identities=14% Similarity=0.182 Sum_probs=49.7
Q ss_pred cCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccH-HHH-hhccCcceEecCCCCHHHHHHHHHH
Q 003037 201 ARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKM-TVA-QMMQSNDVILIRELSEQACWSLFEQ 271 (854)
Q Consensus 201 ~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~-~~~~~~~~~~l~~L~~~e~~~l~~~ 271 (854)
.+++-++|+||+.......+..++..+...+.++.+|++|.+. .+. +..+....+.+.+ +.++..+.+..
T Consensus 102 ~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 102 EGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred cCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 3566799999998877788888999998877777777777654 333 3334456777766 66766666654
No 347
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.65 E-value=0.13 Score=50.01 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.-.+++|+|..|.|||||++.++..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999873
No 348
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.64 E-value=0.16 Score=51.06 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.-.+++|+|..|.|||||++.++.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 29 PGEKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHc
Confidence 346899999999999999999976
No 349
>PRK13948 shikimate kinase; Provisional
Probab=95.64 E-value=0.11 Score=50.19 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
..+.|.++|+.|+||||+++.+.+.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~ 33 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRA 33 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999873
No 350
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.091 Score=57.11 Aligned_cols=52 Identities=27% Similarity=0.278 Sum_probs=38.2
Q ss_pred CCccccch---hHHHHHHHHhcccccc---cCCCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 96 VSEVRGRD---EEKNTLKSKLLCESSE---QQNAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 96 ~~~~vGr~---~~~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
-+++-|-| .|+++|++.|.++..- +..=++=|.++|++|.|||-||++|+-.
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence 34556666 4677888888765421 1234677899999999999999999985
No 351
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.38 Score=54.14 Aligned_cols=54 Identities=24% Similarity=0.274 Sum_probs=38.2
Q ss_pred ccCCccccchhHHHHHHHHhccccccc-------CCCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 94 IDVSEVRGRDEEKNTLKSKLLCESSEQ-------QNAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 94 ~~~~~~vGr~~~~~~l~~~L~~~~~~~-------~~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
+.-+++=|.++...+|.+...-+.... -..++-|.++|++|+|||++|+++++.
T Consensus 431 v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne 491 (693)
T KOG0730|consen 431 VSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE 491 (693)
T ss_pred CChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh
Confidence 344556667777777766554332110 246778899999999999999999994
No 352
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.22 Score=57.00 Aligned_cols=157 Identities=15% Similarity=0.182 Sum_probs=84.1
Q ss_pred CccccchhHHHHHHHHhc---ccccc----cCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHH
Q 003037 97 SEVRGRDEEKNTLKSKLL---CESSE----QQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEF 169 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~---~~~~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 169 (854)
..+.|.+...+.+.+.+. ....- .....+.+.++|++|.|||.||+++++. ....| +.+...
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~--~~~~f-----i~v~~~---- 310 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALE--SRSRF-----ISVKGS---- 310 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhh--CCCeE-----EEeeCH----
Confidence 345666655555544332 21110 0245668999999999999999999993 33444 332221
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHH-HHHhcCCeEEEEEecCCC-----c-C-----hhhHHHHHHhhcC--CCCCcE
Q 003037 170 RIAKAIIEALEGSTPSLGELNSLLERI-YASIARKKFLLVLDDVWT-----E-D-----YNKWETFQRCLKN--GLRGSK 235 (854)
Q Consensus 170 ~~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~l~~k~~LlVlDdv~~-----~-~-----~~~~~~l~~~l~~--~~~gs~ 235 (854)
. +.... ..+.+.....+ ....+..+++|++|++.. . . ......+...+.. ...+..
T Consensus 311 ~----l~sk~------vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~ 380 (494)
T COG0464 311 E----LLSKW------VGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVL 380 (494)
T ss_pred H----Hhccc------cchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceE
Confidence 1 11100 01122222223 333357799999999832 1 1 1223334444432 223333
Q ss_pred EEEecccHHHHhh--c---cCcceEecCCCCHHHHHHHHHHHhc
Q 003037 236 ILVTTRKMTVAQM--M---QSNDVILIRELSEQACWSLFEQLAF 274 (854)
Q Consensus 236 ilvTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~l~~~~~~ 274 (854)
||-||-....... . .-...+.+.+-+.++..+.|..+..
T Consensus 381 vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 381 VIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred EEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 4444443332221 1 1245788888899999999998874
No 353
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.62 E-value=0.44 Score=49.30 Aligned_cols=132 Identities=11% Similarity=0.005 Sum_probs=75.7
Q ss_pred HHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhcccc-----------ccccCeeEEEEeCCccCHHHHHH
Q 003037 105 EKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDV-----------INHFEKRIWVCVSDPFDEFRIAK 173 (854)
Q Consensus 105 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-----------~~~f~~~~wv~~s~~~~~~~~~~ 173 (854)
..++|...+.... -.....++|+.|+||+++|..++...-- .+..+...|+.-...
T Consensus 5 ~~~~L~~~i~~~r-----l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~-------- 71 (290)
T PRK05917 5 AWEALIQRVRDQK-----VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGK-------- 71 (290)
T ss_pred HHHHHHHHHHcCC-----cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCC--------
Confidence 4556666665432 3567779999999999999877763100 000111112210000
Q ss_pred HHHHHhcCCCCCCccHHHHHHHHHHHh-----cCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccH-HHH-
Q 003037 174 AIIEALEGSTPSLGELNSLLERIYASI-----ARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKM-TVA- 246 (854)
Q Consensus 174 ~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~- 246 (854)
.....+++. +.+.+.+ .++.-++|+|++.....+.+..++..+.....++.+|++|.+. .+.
T Consensus 72 ----------~~~I~idqi-R~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~ 140 (290)
T PRK05917 72 ----------GRLHSIETP-RAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPP 140 (290)
T ss_pred ----------CCcCcHHHH-HHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcH
Confidence 001123332 2222222 3556689999998777788899999998877788777666654 333
Q ss_pred hhccCcceEecCCC
Q 003037 247 QMMQSNDVILIREL 260 (854)
Q Consensus 247 ~~~~~~~~~~l~~L 260 (854)
+..+-...+.+.++
T Consensus 141 TI~SRcq~~~~~~~ 154 (290)
T PRK05917 141 TIRSRSLSIHIPME 154 (290)
T ss_pred HHHhcceEEEccch
Confidence 32334556666654
No 354
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.62 E-value=0.048 Score=51.54 Aligned_cols=119 Identities=18% Similarity=0.164 Sum_probs=62.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCC
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIARK 203 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 203 (854)
-.+++|+|..|.|||||++.+... .....+.+++.-...... ........+.-.. +...-+...-.+...+...
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~---~~~~~G~i~~~~~~~~~~--~~~~~~~~i~~~~-qlS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGL---LKPTSGEILIDGKDIAKL--PLEELRRRIGYVP-QLSGGQRQRVALARALLLN 98 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCccEEEECCEEcccC--CHHHHHhceEEEe-eCCHHHHHHHHHHHHHhcC
Confidence 468999999999999999999873 223445555432211110 0011111111100 0111222333355666667
Q ss_pred eEEEEEecCCC-cChhhHHHHHHhhcCC-CCCcEEEEecccHHHHhh
Q 003037 204 KFLLVLDDVWT-EDYNKWETFQRCLKNG-LRGSKILVTTRKMTVAQM 248 (854)
Q Consensus 204 ~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~~ 248 (854)
+-++++|+.-. -+......+...+... ..+..++++|-+......
T Consensus 99 ~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 99 PDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 88999998743 2233344444444321 124568888877665544
No 355
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.054 Score=60.85 Aligned_cols=73 Identities=22% Similarity=0.142 Sum_probs=48.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCcc--CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPF--DEFRIAKAIIEALEGSTPSLGELNSLLERIYASI 200 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 200 (854)
...-|.|.|..|+|||+||+++++... +.+...+.+|+++.-. ..+.+++.+ .......+
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l-----------------~~vfse~~ 491 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFL-----------------NNVFSEAL 491 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHH-----------------HHHHHHHH
Confidence 566789999999999999999999644 4455566677766431 122222211 12233445
Q ss_pred cCCeEEEEEecCC
Q 003037 201 ARKKFLLVLDDVW 213 (854)
Q Consensus 201 ~~k~~LlVlDdv~ 213 (854)
.-.+-+|||||+.
T Consensus 492 ~~~PSiIvLDdld 504 (952)
T KOG0735|consen 492 WYAPSIIVLDDLD 504 (952)
T ss_pred hhCCcEEEEcchh
Confidence 6678999999983
No 356
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.57 E-value=0.016 Score=53.85 Aligned_cols=36 Identities=33% Similarity=0.256 Sum_probs=26.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEE
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVC 161 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 161 (854)
..+|.|+|.+|+||||||+++.+. ....-..++++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~--L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERR--LFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHH--HHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEec
Confidence 468999999999999999999984 444444555654
No 357
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.56 E-value=0.0099 Score=53.95 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=19.3
Q ss_pred EEEEecCCCcHHHHHHHHHhc
Q 003037 127 ISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 127 v~I~G~gGiGKTtLa~~v~~~ 147 (854)
|+|.|.+|+||||+|+++...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999884
No 358
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.55 E-value=0.14 Score=51.48 Aligned_cols=123 Identities=16% Similarity=0.165 Sum_probs=67.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccc-----cc--c----cc---CeeEEEEe----CCcc--CH--------------
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNND-----VI--N----HF---EKRIWVCV----SDPF--DE-------------- 168 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~-----~~--~----~f---~~~~wv~~----s~~~--~~-------------- 168 (854)
.-.+++|+|+.|.|||||.+.+..-.+ +. + .+ ..+.||.= ...+ ++
T Consensus 29 ~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~ 108 (254)
T COG1121 29 KGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGW 108 (254)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccc
Confidence 346899999999999999999987211 00 0 01 13445531 1100 11
Q ss_pred --------HHHHHHHHHHhcCC-----CCCCccHHHHH-HHHHHHhcCCeEEEEEecCCC----cChhhHHHHHHhhcCC
Q 003037 169 --------FRIAKAIIEALEGS-----TPSLGELNSLL-ERIYASIARKKFLLVLDDVWT----EDYNKWETFQRCLKNG 230 (854)
Q Consensus 169 --------~~~~~~i~~~l~~~-----~~~~~~~~~~~-~~l~~~l~~k~~LlVlDdv~~----~~~~~~~~l~~~l~~~ 230 (854)
.+...+.++.++.. ....-+-.+.+ -.+.+.|..++=|++||.-.. ......-.+...+...
T Consensus 109 ~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e 188 (254)
T COG1121 109 FRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE 188 (254)
T ss_pred cccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC
Confidence 13344444444432 11112223333 345577889999999997432 1122333344444443
Q ss_pred CCCcEEEEecccHHHHh
Q 003037 231 LRGSKILVTTRKMTVAQ 247 (854)
Q Consensus 231 ~~gs~ilvTtR~~~v~~ 247 (854)
|.-||++|-+-....
T Consensus 189 --g~tIl~vtHDL~~v~ 203 (254)
T COG1121 189 --GKTVLMVTHDLGLVM 203 (254)
T ss_pred --CCEEEEEeCCcHHhH
Confidence 888999888765443
No 359
>PTZ00035 Rad51 protein; Provisional
Probab=95.54 E-value=0.11 Score=55.56 Aligned_cols=58 Identities=19% Similarity=0.163 Sum_probs=40.2
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhccccc----cccCeeEEEEeCCccCHHHHHHHHHHHhc
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNNNDVI----NHFEKRIWVCVSDPFDEFRIAKAIIEALE 180 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 180 (854)
..-.++.|+|.+|+|||||+..++-..... +.-..++|++....+++++ +.++++.++
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g 177 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFG 177 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhC
Confidence 467899999999999999998886532211 1223567999887777766 344455544
No 360
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.52 E-value=0.069 Score=52.91 Aligned_cols=93 Identities=22% Similarity=0.249 Sum_probs=54.5
Q ss_pred HHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCcc-CHHHHHHHHHHH--hc-----
Q 003037 109 LKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPF-DEFRIAKAIIEA--LE----- 180 (854)
Q Consensus 109 l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~--l~----- 180 (854)
.++.|..-. +-.-++|.|.+|+|||+|++.+.+.. .-+.++++.+++.. ++.++.+++... +.
T Consensus 5 ~ID~l~Pig-----~Gqr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv 75 (215)
T PF00006_consen 5 AIDLLFPIG-----RGQRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVV 75 (215)
T ss_dssp HHHHHSCEE-----TTSEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEE
T ss_pred eeccccccc-----cCCEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccc
Confidence 455555433 23457899999999999999998853 23455888887653 445555555332 10
Q ss_pred CCCCCCccHH---------HHHHHHHHHhcCCeEEEEEecC
Q 003037 181 GSTPSLGELN---------SLLERIYASIARKKFLLVLDDV 212 (854)
Q Consensus 181 ~~~~~~~~~~---------~~~~~l~~~l~~k~~LlVlDdv 212 (854)
....+..... ...++++. +++.+|+++||+
T Consensus 76 ~~t~~~~~~~r~~~~~~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 76 AATSDEPPAARYRAPYTALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp EEETTS-HHHHHHHHHHHHHHHHHHHH--TTSEEEEEEETH
T ss_pred cccchhhHHHHhhhhccchhhhHHHhh--cCCceeehhhhh
Confidence 0011111111 12223333 689999999998
No 361
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.51 E-value=0.0016 Score=64.38 Aligned_cols=100 Identities=18% Similarity=0.206 Sum_probs=73.5
Q ss_pred CCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccccCCCceeeecCCCCcccch--h
Q 003037 480 AKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIEELPE--T 557 (854)
Q Consensus 480 ~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~~lP~--~ 557 (854)
+.+.+.|.+.+|. +..+ ....+|+.|++|.|+-|. |..|- .+..+++|+.|.|+.|.|..+-+ -
T Consensus 18 l~~vkKLNcwg~~---L~DI--sic~kMp~lEVLsLSvNk--------IssL~-pl~rCtrLkElYLRkN~I~sldEL~Y 83 (388)
T KOG2123|consen 18 LENVKKLNCWGCG---LDDI--SICEKMPLLEVLSLSVNK--------ISSLA-PLQRCTRLKELYLRKNCIESLDELEY 83 (388)
T ss_pred HHHhhhhcccCCC---ccHH--HHHHhcccceeEEeeccc--------cccch-hHHHHHHHHHHHHHhcccccHHHHHH
Confidence 4456677777776 3331 235789999999999998 77774 47888999999999999887764 4
Q ss_pred hhcCCCCcEEeecCcccccccccc-----cccCCCCcccCc
Q 003037 558 CCELFNVQTLEVLDCRSFRRLPQG-----FGKLVNLRNLSK 593 (854)
Q Consensus 558 i~~L~~L~~L~l~~~~~l~~lp~~-----i~~L~~L~~L~~ 593 (854)
+.+|++|++|.|..|+....-+.. +.-|++|++|..
T Consensus 84 LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 678899999999888755444443 456777777743
No 362
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.63 Score=45.66 Aligned_cols=189 Identities=15% Similarity=0.190 Sum_probs=96.5
Q ss_pred cccc-hhHHHHHHHHhcccccc-------cCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHH
Q 003037 99 VRGR-DEEKNTLKSKLLCESSE-------QQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFR 170 (854)
Q Consensus 99 ~vGr-~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 170 (854)
.||+ ++.+++|.+.+.-+..+ +-.+++-+.++|++|.|||-||++|+++ ..+-|+.||...
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgse---- 216 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGSE---- 216 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechHH----
Confidence 4554 66667666654322211 1346777889999999999999999984 234567777532
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHh-cCCeEEEEEecCCCc-----------ChhhHHHHHHh---hcC--CCCC
Q 003037 171 IAKAIIEALEGSTPSLGELNSLLERIYASI-ARKKFLLVLDDVWTE-----------DYNKWETFQRC---LKN--GLRG 233 (854)
Q Consensus 171 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~-----------~~~~~~~l~~~---l~~--~~~g 233 (854)
+.+..+ + +.......+.-.. ...+-+|+.|.+... +.+........ +.- ..+.
T Consensus 217 lvqk~i---g-------egsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatkn 286 (404)
T KOG0728|consen 217 LVQKYI---G-------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKN 286 (404)
T ss_pred HHHHHh---h-------hhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccc
Confidence 221111 1 1112222222222 244778888877431 11222222222 222 2355
Q ss_pred cEEEEecccHHHHhh--ccC---cceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHHHh
Q 003037 234 SKILVTTRKMTVAQM--MQS---NDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTIGS 308 (854)
Q Consensus 234 s~ilvTtR~~~v~~~--~~~---~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~ 308 (854)
-+||.+|..-++... +.+ +.-++.++-+++.-.++++-+.- ..+....-.+..+|+++.-..|.---++-.=|+
T Consensus 287 ikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsr-kmnl~rgi~l~kiaekm~gasgaevk~vcteag 365 (404)
T KOG0728|consen 287 IKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSR-KMNLTRGINLRKIAEKMPGASGAEVKGVCTEAG 365 (404)
T ss_pred eEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhh-hhchhcccCHHHHHHhCCCCccchhhhhhhhhh
Confidence 678887765444332 122 44667777676666666654431 111122345566666655433333334444444
Q ss_pred h
Q 003037 309 L 309 (854)
Q Consensus 309 ~ 309 (854)
+
T Consensus 366 m 366 (404)
T KOG0728|consen 366 M 366 (404)
T ss_pred H
Confidence 4
No 363
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.48 E-value=0.078 Score=51.16 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=22.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
...+|.|+|.+|+||||+|+.++..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999884
No 364
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.46 E-value=0.19 Score=49.36 Aligned_cols=119 Identities=15% Similarity=0.123 Sum_probs=59.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEE---------------eCCcc---CHHHHHHHHHHHhcCCCC
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVC---------------VSDPF---DEFRIAKAIIEALEGSTP 184 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~---------------~s~~~---~~~~~~~~i~~~l~~~~~ 184 (854)
.-.+++|.|..|.|||||.+.++.-.. .....+.+++. +.+.. ....+...+.......
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~~-~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-- 110 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRRT-GLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-- 110 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC-CCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc--
Confidence 456899999999999999999987320 01222222221 11111 0011222221100000
Q ss_pred CCccHHHHHHHHHHHhcCCeEEEEEecCCC-cChhhHHHHHHhhcCC-CCCcEEEEecccHH
Q 003037 185 SLGELNSLLERIYASIARKKFLLVLDDVWT-EDYNKWETFQRCLKNG-LRGSKILVTTRKMT 244 (854)
Q Consensus 185 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~ 244 (854)
....-+.-.-.+.+.+..++-++++|+.-. -+....+.+...+... ..|..||++|.+..
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 111122222344556667778999998643 2334445555544432 23667888887653
No 365
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.46 E-value=0.039 Score=59.33 Aligned_cols=112 Identities=17% Similarity=0.116 Sum_probs=68.5
Q ss_pred CccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHH
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAII 176 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 176 (854)
..++|+++....+...+.... -+.+.|.+|+|||+||+.++.. .. -..++|.+.....+.+++....
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~~--------~vll~G~PG~gKT~la~~lA~~--l~---~~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 24 KVVVGDEEVIELALLALLAGG--------HVLLEGPPGVGKTLLARALARA--LG---LPFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred CeeeccHHHHHHHHHHHHcCC--------CEEEECCCCccHHHHHHHHHHH--hC---CCeEEEecCCCCCHHHhcCchh
Confidence 348999999888887776433 4789999999999999999983 33 2345666666666666544433
Q ss_pred HHhc---CCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcC
Q 003037 177 EALE---GSTPSLGELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKN 229 (854)
Q Consensus 177 ~~l~---~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~ 229 (854)
-... .......+ ..+ ...-+.++.+|.++......-..+...+..
T Consensus 91 ~~~~~~~~~~~~~~~-----gpl---~~~~~~ill~DEInra~p~~q~aLl~~l~e 138 (329)
T COG0714 91 YAALLLEPGEFRFVP-----GPL---FAAVRVILLLDEINRAPPEVQNALLEALEE 138 (329)
T ss_pred HhhhhccCCeEEEec-----CCc---ccccceEEEEeccccCCHHHHHHHHHHHhC
Confidence 3221 10000000 000 001115999999987666666666666654
No 366
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.42 E-value=0.13 Score=50.88 Aligned_cols=120 Identities=15% Similarity=0.127 Sum_probs=61.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhcc--c-cccc--cC--------------e-eEEEEeCCccC--HHHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNN--D-VINH--FE--------------K-RIWVCVSDPFD--EFRIAKAIIEALE 180 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~--~-~~~~--f~--------------~-~~wv~~s~~~~--~~~~~~~i~~~l~ 180 (854)
.-.+++|+|..|.|||||++.+.... . ..+. |+ . +.++ .+... ......+++....
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v--~q~~~~~~~~~~~~~l~~~~ 102 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLA--FQYPPEIPGVKNADFLRYVN 102 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEe--ecChhhccCccHHHHHhhcc
Confidence 45689999999999999999988741 0 1110 10 0 1111 11110 0011111211110
Q ss_pred CCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCC-cChhhHHHHHHhhcCC-CCCcEEEEecccHHHHh
Q 003037 181 GSTPSLGELNSLLERIYASIARKKFLLVLDDVWT-EDYNKWETFQRCLKNG-LRGSKILVTTRKMTVAQ 247 (854)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~ 247 (854)
......+.-.-.+.+.+..++-++++|+.-. -+....+.+...+... ..|..||++|.+.....
T Consensus 103 ---~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 103 ---EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 1112222233345566677888999998743 2334444444444332 23567888887776554
No 367
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.42 E-value=0.19 Score=51.14 Aligned_cols=61 Identities=18% Similarity=0.327 Sum_probs=36.5
Q ss_pred HHHHHhcCCeEEEEEecCCC-cChhhHHHHHHhhcCCCCCcEEEEecccHHHHhhccCcceEec
Q 003037 195 RIYASIARKKFLLVLDDVWT-EDYNKWETFQRCLKNGLRGSKILVTTRKMTVAQMMQSNDVILI 257 (854)
Q Consensus 195 ~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l 257 (854)
.+.+.+..++-++++|+... -+....+.+...+.....|..||++|.+...... ....+.+
T Consensus 147 ~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~--~d~~~~l 208 (236)
T cd03253 147 AIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN--ADKIIVL 208 (236)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh--CCEEEEE
Confidence 34556667888999998743 2334445555555443336678888877765543 3344444
No 368
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.41 E-value=0.29 Score=52.40 Aligned_cols=105 Identities=20% Similarity=0.179 Sum_probs=63.2
Q ss_pred CeEEEEEEecCCCcHHHHH-HHHHhccccccccCeeEEEEeCCc-cCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLA-QFAYNNNDVINHFEKRIWVCVSDP-FDEFRIAKAIIEALEGSTPSLGELNSLLERIYASI 200 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 200 (854)
+.++|.+||+.|+||||-. +..+.- .....=..+..++.... ....+-++..++-++.+-....+..++...+...
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~-~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l- 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARY-VMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL- 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHH-HhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-
Confidence 4899999999999998754 444442 11233346777776653 2445566777777777655555556665555443
Q ss_pred cCCeEEEEEecCCC--cChhhHHHHHHhhcCC
Q 003037 201 ARKKFLLVLDDVWT--EDYNKWETFQRCLKNG 230 (854)
Q Consensus 201 ~~k~~LlVlDdv~~--~~~~~~~~l~~~l~~~ 230 (854)
+.. =+|.+|=+-. .+....+.+...+...
T Consensus 280 ~~~-d~ILVDTaGrs~~D~~~i~el~~~~~~~ 310 (407)
T COG1419 280 RDC-DVILVDTAGRSQYDKEKIEELKELIDVS 310 (407)
T ss_pred hcC-CEEEEeCCCCCccCHHHHHHHHHHHhcc
Confidence 333 4556676633 2334556666666544
No 369
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.40 E-value=0.095 Score=52.15 Aligned_cols=62 Identities=10% Similarity=0.079 Sum_probs=36.6
Q ss_pred HHHHhcCCeEEEEEecCCC-cChhhHHHHHHhhcC-CCCCcEEEEecccHHHHhhccCcceEecCCC
Q 003037 196 IYASIARKKFLLVLDDVWT-EDYNKWETFQRCLKN-GLRGSKILVTTRKMTVAQMMQSNDVILIREL 260 (854)
Q Consensus 196 l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~-~~~gs~ilvTtR~~~v~~~~~~~~~~~l~~L 260 (854)
+.+.+..++-++++|+--. -+....+.+...+.. ...|..||++|.+...... ..++.++..
T Consensus 138 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~~~ 201 (207)
T PRK13539 138 LARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLGPF 201 (207)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeecCc
Confidence 3455556788999998633 233444455555442 1246678888887655443 556666553
No 370
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.39 E-value=0.13 Score=52.98 Aligned_cols=126 Identities=17% Similarity=0.130 Sum_probs=66.1
Q ss_pred HHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEE---eCCccCHHHHHHHHHHHhcC
Q 003037 105 EKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVC---VSDPFDEFRIAKAIIEALEG 181 (854)
Q Consensus 105 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~---~s~~~~~~~~~~~i~~~l~~ 181 (854)
..+.+...|... ++..-++|+|..|+|||||.+.++.. . ....+.+++. +....+. .++......
T Consensus 97 ~~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~--~-~~~~G~i~~~g~~v~~~d~~----~ei~~~~~~ 164 (270)
T TIGR02858 97 AADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARI--L-STGISQLGLRGKKVGIVDER----SEIAGCVNG 164 (270)
T ss_pred cHHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCc--c-CCCCceEEECCEEeecchhH----HHHHHHhcc
Confidence 344455555432 24567999999999999999999983 2 2223344432 2111111 222222211
Q ss_pred -CCC------CCccHHHHHHHHHHHhc-CCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccHHHHh
Q 003037 182 -STP------SLGELNSLLERIYASIA-RKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKMTVAQ 247 (854)
Q Consensus 182 -~~~------~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 247 (854)
... +..+...-...+...+. -.+-++++|.+- ..+.+..+...+. .|..+|+||-+..+..
T Consensus 165 ~~q~~~~~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~--~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 165 VPQHDVGIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIG--REEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred cccccccccccccccchHHHHHHHHHHhCCCCEEEEeCCC--cHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 100 00000001112222222 578899999984 3345556655553 4778999998665533
No 371
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.39 E-value=0.22 Score=49.86 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.-.+++|+|..|+|||||++.++..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 4568999999999999999999774
No 372
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.35 E-value=0.098 Score=56.67 Aligned_cols=82 Identities=27% Similarity=0.266 Sum_probs=47.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCC-----CCccHHHHHHHHH
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTP-----SLGELNSLLERIY 197 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 197 (854)
.-.++.|.|.+|+|||||+.+++.. ....-..++|++..+. ..++ +.-++.++.... ...+.+.+.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 4578999999999999999988864 3233346778876543 3333 222344443211 1123344433332
Q ss_pred HHhcCCeEEEEEecC
Q 003037 198 ASIARKKFLLVLDDV 212 (854)
Q Consensus 198 ~~l~~k~~LlVlDdv 212 (854)
..+.-++|+|.+
T Consensus 156 ---~~~~~lVVIDSI 167 (372)
T cd01121 156 ---ELKPDLVIIDSI 167 (372)
T ss_pred ---hcCCcEEEEcch
Confidence 235567788877
No 373
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.35 E-value=0.014 Score=58.02 Aligned_cols=26 Identities=35% Similarity=0.445 Sum_probs=23.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
+...+|+|+|++|+||||||+.++..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999873
No 374
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=95.32 E-value=0.52 Score=48.05 Aligned_cols=126 Identities=17% Similarity=0.210 Sum_probs=81.8
Q ss_pred cCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHH
Q 003037 95 DVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKA 174 (854)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 174 (854)
..+.|+|-... .++..++.... ...+.+.|+|+.|+|||+-++.+++. .+..+-+..+..++...+...
T Consensus 70 ~~~~~l~tkt~-r~~~~~~~~A~----k~g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~ 138 (297)
T COG2842 70 LAPDFLETKTV-RRIFFRTRPAS----KTGSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILI 138 (297)
T ss_pred ccccccccchh-HhHhhhhhhhh----hcCceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHH
Confidence 34556665433 22333333222 13348889999999999999999883 223334456777777777777
Q ss_pred HHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCC
Q 003037 175 IIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRG 233 (854)
Q Consensus 175 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 233 (854)
++........ ....+....+...+++..-+++.|+...-....++.+.......+-+
T Consensus 139 i~~~~~~~~~--~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~~Gi~ 195 (297)
T COG2842 139 ICAAAFGATD--GTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDKTGIG 195 (297)
T ss_pred HHHHHhcccc--hhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHhhCce
Confidence 7766655432 24455666667777888899999998776667777777765554333
No 375
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.32 E-value=0.24 Score=50.17 Aligned_cols=53 Identities=17% Similarity=0.322 Sum_probs=32.1
Q ss_pred HHHHHhcCCeEEEEEecCCC-cChhhHHHHHHhhcCCCCCcEEEEecccHHHHh
Q 003037 195 RIYASIARKKFLLVLDDVWT-EDYNKWETFQRCLKNGLRGSKILVTTRKMTVAQ 247 (854)
Q Consensus 195 ~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 247 (854)
.+.+.+..++-++++|+-.. -+....+.+...+.....|..||++|.+.....
T Consensus 149 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 202 (229)
T cd03254 149 AIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIK 202 (229)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHh
Confidence 34455567788999998643 233444445554443334667888887766554
No 376
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.32 E-value=0.015 Score=58.08 Aligned_cols=26 Identities=35% Similarity=0.529 Sum_probs=23.4
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.+..+|+|.|.+|+||||||+.++..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999999884
No 377
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.31 E-value=0.3 Score=49.14 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.-.+++|+|..|+|||||++.++.-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4458999999999999999999863
No 378
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.30 E-value=0.17 Score=52.13 Aligned_cols=104 Identities=12% Similarity=0.101 Sum_probs=55.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCcc-CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPF-DEFRIAKAIIEALEGSTPSLGELNSLLERIYASIA 201 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 201 (854)
+..+++++|.+|+||||+++.+... ....-..+.+++..... ....-++...+.++.+.....+.+.+...+...-+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~--l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHh
Confidence 3468999999999999999888763 22211245566654321 12222233333333322222344444444433212
Q ss_pred -CCeEEEEEecCCCc--ChhhHHHHHHhhc
Q 003037 202 -RKKFLLVLDDVWTE--DYNKWETFQRCLK 228 (854)
Q Consensus 202 -~k~~LlVlDdv~~~--~~~~~~~l~~~l~ 228 (854)
.+.=++++|..-.. +....+.+...+.
T Consensus 152 ~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~ 181 (270)
T PRK06731 152 EARVDYILIDTAGKNYRASETVEEMIETMG 181 (270)
T ss_pred cCCCCEEEEECCCCCcCCHHHHHHHHHHHh
Confidence 24568899987442 2344555555443
No 379
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.30 E-value=0.034 Score=59.86 Aligned_cols=102 Identities=23% Similarity=0.264 Sum_probs=57.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhcccc----ccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHH
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDV----INHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYA 198 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~----~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 198 (854)
.++=+.|||..|.|||.|.-.+|+...+ +-|| ...+.++-+.+..-..... ....+.+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HF--------------h~Fm~~vh~~l~~~~~~~~----~l~~va~ 122 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHF--------------HEFMLDVHSRLHQLRGQDD----PLPQVAD 122 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccccccc--------------cHHHHHHHHHHHHHhCCCc----cHHHHHH
Confidence 5677999999999999999999986333 2233 1223333333322111111 2334455
Q ss_pred HhcCCeEEEEEecCCCcChhhHHHHHHhhcC-CCCCcEEEEecccH
Q 003037 199 SIARKKFLLVLDDVWTEDYNKWETFQRCLKN-GLRGSKILVTTRKM 243 (854)
Q Consensus 199 ~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~ilvTtR~~ 243 (854)
.+.++..||.||.+.-.+..+---+...+.. ...|. +||+|-|.
T Consensus 123 ~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gv-vlVaTSN~ 167 (362)
T PF03969_consen 123 ELAKESRLLCFDEFQVTDIADAMILKRLFEALFKRGV-VLVATSNR 167 (362)
T ss_pred HHHhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCC-EEEecCCC
Confidence 6677778999999865554333223333322 23565 55555543
No 380
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.30 E-value=0.013 Score=46.36 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHHhc
Q 003037 126 VISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
+|+|.|..|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 381
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.28 E-value=0.053 Score=55.90 Aligned_cols=41 Identities=20% Similarity=0.256 Sum_probs=30.8
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCC
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSD 164 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 164 (854)
..-+++.|.|.+|+|||++|.+++.. ....-..+++++...
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~--~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVT--QASRGNPVLFVTVES 74 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHH--HHhCCCcEEEEEecC
Confidence 35689999999999999999887653 212234778888864
No 382
>PRK06547 hypothetical protein; Provisional
Probab=95.27 E-value=0.025 Score=54.15 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=23.3
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
....+|+|.|.+|+||||+|+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999874
No 383
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.26 E-value=0.028 Score=53.95 Aligned_cols=22 Identities=36% Similarity=0.448 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHHhc
Q 003037 126 VISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999985
No 384
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.23 E-value=0.069 Score=61.09 Aligned_cols=154 Identities=12% Similarity=0.080 Sum_probs=81.3
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAI 175 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 175 (854)
-..++|....+.++.+.+..... ...-|.|+|..|+||+++|+.+..... + .-...+.+++.... ...+..
T Consensus 203 f~~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~~s~-r-~~~pfv~inca~~~--~~~~e~- 273 (520)
T PRK10820 203 FSQIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHLRSP-R-GKKPFLALNCASIP--DDVVES- 273 (520)
T ss_pred ccceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHHhCC-C-CCCCeEEeccccCC--HHHHHH-
Confidence 34789999888888877754332 233477999999999999999866311 1 11123455555432 222222
Q ss_pred HHHhcCCCCCC-ccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCC-----------CCcEEEEecccH
Q 003037 176 IEALEGSTPSL-GELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGL-----------RGSKILVTTRKM 243 (854)
Q Consensus 176 ~~~l~~~~~~~-~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~~ 243 (854)
.+.+..... ........-+.+ ....=.|+||++..-.......+...+..+. ...|||.||...
T Consensus 274 --elFG~~~~~~~~~~~~~~g~~e--~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~ 349 (520)
T PRK10820 274 --ELFGHAPGAYPNALEGKKGFFE--QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKN 349 (520)
T ss_pred --HhcCCCCCCcCCcccCCCChhh--hcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCC
Confidence 222211100 000000000001 1223357899997766666677777775431 234788877654
Q ss_pred HHHhh----cc-------CcceEecCCCCH
Q 003037 244 TVAQM----MQ-------SNDVILIRELSE 262 (854)
Q Consensus 244 ~v~~~----~~-------~~~~~~l~~L~~ 262 (854)
-.... +. ....+.+++|.+
T Consensus 350 l~~l~~~g~f~~dL~~rL~~~~i~lPpLre 379 (520)
T PRK10820 350 LVELVQKGEFREDLYYRLNVLTLNLPPLRD 379 (520)
T ss_pred HHHHHHcCCccHHHHhhcCeeEEeCCCccc
Confidence 21100 00 124677888766
No 385
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.21 E-value=0.28 Score=52.10 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=18.9
Q ss_pred EEEEecCCCcHHHHHHHHHhc
Q 003037 127 ISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 127 v~I~G~gGiGKTtLa~~v~~~ 147 (854)
+.+.|++|+||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999874
No 386
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.20 E-value=0.17 Score=49.70 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.-.+++|+|..|.|||||++.++.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999985
No 387
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.20 E-value=0.082 Score=50.79 Aligned_cols=119 Identities=18% Similarity=0.041 Sum_probs=64.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEe---CCccCHHHHHHHHH--HH--hcCC----C-CCCcc--
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCV---SDPFDEFRIAKAII--EA--LEGS----T-PSLGE-- 188 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---s~~~~~~~~~~~i~--~~--l~~~----~-~~~~~-- 188 (854)
....|.|+|..|-||||.|..+.-. ..++=-.+..+-+ .........++.+- .. .+.. . ....+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~r--a~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALR--AVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHH--HHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHH
Confidence 3567899999999999999666553 2222222333332 21223333333310 00 0110 0 00011
Q ss_pred -HHHHHHHHHHHhcC-CeEEEEEecCCC---cChhhHHHHHHhhcCCCCCcEEEEecccH
Q 003037 189 -LNSLLERIYASIAR-KKFLLVLDDVWT---EDYNKWETFQRCLKNGLRGSKILVTTRKM 243 (854)
Q Consensus 189 -~~~~~~~l~~~l~~-k~~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 243 (854)
.....+..++.+.. +-=++|||.+-. ...-..+++...+...+.+..||+|-|+.
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 11223334445544 455999999721 12234567888887777888999999975
No 388
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.18 E-value=0.25 Score=53.79 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=20.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
-.+++|+|+.|.||||||+.+.-
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHc
Confidence 35799999999999999998865
No 389
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.18 E-value=0.36 Score=49.08 Aligned_cols=61 Identities=13% Similarity=0.285 Sum_probs=35.4
Q ss_pred HHHHHhcCCeEEEEEecCCC-cChhhHHHHHHhhcCCCCCcEEEEecccHHHHhhccCcceEec
Q 003037 195 RIYASIARKKFLLVLDDVWT-EDYNKWETFQRCLKNGLRGSKILVTTRKMTVAQMMQSNDVILI 257 (854)
Q Consensus 195 ~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l 257 (854)
.+.+.+..++-++++|+.-. -+....+.+...+.....+..||++|.+...... .+..+.+
T Consensus 148 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~v~~l 209 (234)
T cd03251 148 AIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN--ADRIVVL 209 (234)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh--CCEEEEe
Confidence 34455556777999998633 2344455555555433346678888877665543 3444444
No 390
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.18 E-value=0.035 Score=54.77 Aligned_cols=121 Identities=13% Similarity=0.110 Sum_probs=60.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCc---cHHHHHHHHHHH
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLG---ELNSLLERIYAS 199 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~---~~~~~~~~l~~~ 199 (854)
..+++.|.|+.|.||||+.+.+....-.. ....+|.... .. -.+...|...++....... ....-...+...
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~~~la---~~G~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~i 102 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLAIMA---QIGCFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYI 102 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHH---HcCCCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHHH
Confidence 34789999999999999998886531111 1111221111 01 1222333333322211101 111111112222
Q ss_pred --hcCCeEEEEEecCCCc-Chhh----HHHHHHhhcCCCCCcEEEEecccHHHHhhcc
Q 003037 200 --IARKKFLLVLDDVWTE-DYNK----WETFQRCLKNGLRGSKILVTTRKMTVAQMMQ 250 (854)
Q Consensus 200 --l~~k~~LlVlDdv~~~-~~~~----~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~ 250 (854)
+..++-|+++|..-.. +..+ ...+...+.. .|+.+|++|-+.+.+..+.
T Consensus 103 l~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 103 LDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 2356889999997431 1111 1223333433 3778999999888877654
No 391
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.16 E-value=0.029 Score=54.29 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHhc
Q 003037 126 VISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 392
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.13 E-value=0.047 Score=54.43 Aligned_cols=121 Identities=11% Similarity=0.089 Sum_probs=57.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCC---CCccHHHHHHHHHH--
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTP---SLGELNSLLERIYA-- 198 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~-- 198 (854)
.+++.|+|+.|.||||+.+.+...... .+-...+|..-.. ...+.++...+..... .......-..++..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~~~~----~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l 103 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPADSAT----IGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKAL 103 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcCCcE----EeeeeeeeeeeCCccChhhccchHHHHHHHHHHHH
Confidence 488999999999999999988742111 1111112211000 0011112222221110 00111111222222
Q ss_pred HhcCCeEEEEEecCCCc-ChhhH----HHHHHhhcCC-CCCcEEEEecccHHHHhhc
Q 003037 199 SIARKKFLLVLDDVWTE-DYNKW----ETFQRCLKNG-LRGSKILVTTRKMTVAQMM 249 (854)
Q Consensus 199 ~l~~k~~LlVlDdv~~~-~~~~~----~~l~~~l~~~-~~gs~ilvTtR~~~v~~~~ 249 (854)
.+..++-|++||..-.. +..+. ..+...+... ..+..+|+||-+.+.+...
T Consensus 104 ~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 104 RLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 22467899999998542 11111 2233333322 2345799999988776654
No 393
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.13 E-value=0.48 Score=45.98 Aligned_cols=123 Identities=18% Similarity=0.178 Sum_probs=66.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEe-------------------CCccC----------------
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCV-------------------SDPFD---------------- 167 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-------------------s~~~~---------------- 167 (854)
.-.|++|+|++|+|||||.+.+-. ....=.+.+|+.- -+.|+
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~---LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~ 103 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNG---LEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV 103 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC---CcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhH
Confidence 456899999999999999999866 2222234445431 11111
Q ss_pred ---------HHHHHHHHHHHhcCC-----CCCC-ccHHHHHHHHHHHhcCCeEEEEEecCCC-cChhhHHHHHHhhcC-C
Q 003037 168 ---------EFRIAKAIIEALEGS-----TPSL-GELNSLLERIYASIARKKFLLVLDDVWT-EDYNKWETFQRCLKN-G 230 (854)
Q Consensus 168 ---------~~~~~~~i~~~l~~~-----~~~~-~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~-~ 230 (854)
.++...++++.++.. .+.. ..-++-.-.+.+.|.=++-++.||..-+ -|++.-..+...+.. .
T Consensus 104 ~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA 183 (240)
T COG1126 104 KVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLA 183 (240)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHH
Confidence 123333334443322 1111 1122223345566777788999999733 234444444443332 2
Q ss_pred CCCcEEEEecccHHHHhh
Q 003037 231 LRGSKILVTTRKMTVAQM 248 (854)
Q Consensus 231 ~~gs~ilvTtR~~~v~~~ 248 (854)
..|-.+|+.|-.-..|..
T Consensus 184 ~eGmTMivVTHEM~FAr~ 201 (240)
T COG1126 184 EEGMTMIIVTHEMGFARE 201 (240)
T ss_pred HcCCeEEEEechhHHHHH
Confidence 356667777766555544
No 394
>PRK06762 hypothetical protein; Provisional
Probab=95.12 E-value=0.017 Score=55.23 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhc
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
..+|.|.|++|+||||+|+.+.+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 395
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.11 E-value=0.28 Score=49.36 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.-.+++|.|+.|.|||||++.+..-
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999863
No 396
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.11 E-value=0.036 Score=55.41 Aligned_cols=65 Identities=23% Similarity=0.210 Sum_probs=37.5
Q ss_pred HHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHH
Q 003037 105 EKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAK 173 (854)
Q Consensus 105 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 173 (854)
+...+++.+.... ++..+|+|.|+||+|||||+.++....+.+++--.++-|+-|+.++--.++-
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLG 78 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLG 78 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS-
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccc
Confidence 4456666665432 3678999999999999999988877433333333455555566666544443
No 397
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.10 E-value=0.24 Score=50.67 Aligned_cols=25 Identities=36% Similarity=0.563 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.-.+++|+|..|+|||||++.++..
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999874
No 398
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.09 E-value=0.19 Score=46.93 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHHhc
Q 003037 126 VISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
+|.|+|.+|+||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999998874
No 399
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=95.06 E-value=0.31 Score=49.16 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.-.+++|+|..|.|||||++.+...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 25 KNSVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4458999999999999999999863
No 400
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.06 E-value=0.11 Score=56.84 Aligned_cols=88 Identities=18% Similarity=0.185 Sum_probs=48.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCc-cCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDP-FDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIA 201 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 201 (854)
...+++++|..|+||||++..+..........+.+..+..... ....+-+....+.++.......+..++...+. .++
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~-~l~ 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLH-ELR 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHH-Hhc
Confidence 4679999999999999999887763111112234444544331 23334455556666554333334444433333 344
Q ss_pred CCeEEEEEecC
Q 003037 202 RKKFLLVLDDV 212 (854)
Q Consensus 202 ~k~~LlVlDdv 212 (854)
++ -++++|-.
T Consensus 269 ~~-d~VLIDTa 278 (420)
T PRK14721 269 GK-HMVLIDTV 278 (420)
T ss_pred CC-CEEEecCC
Confidence 43 45667765
No 401
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.06 E-value=0.062 Score=56.33 Aligned_cols=83 Identities=20% Similarity=0.112 Sum_probs=51.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCC-----CCccHHHHHHHHH
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTP-----SLGELNSLLERIY 197 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 197 (854)
.-+++-|+|..|+||||||..+... ....-..++|++....+++. .++.++.+.. .....++....+.
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHH
Confidence 5679999999999999999888764 33344578899988876654 3355544311 1234455556566
Q ss_pred HHhcCC-eEEEEEecC
Q 003037 198 ASIARK-KFLLVLDDV 212 (854)
Q Consensus 198 ~~l~~k-~~LlVlDdv 212 (854)
+.++.. .-++|+|-|
T Consensus 125 ~lirsg~~~lVVvDSv 140 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSV 140 (322)
T ss_dssp HHHHTTSESEEEEE-C
T ss_pred HHhhcccccEEEEecC
Confidence 666543 458899987
No 402
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.04 E-value=0.17 Score=55.36 Aligned_cols=51 Identities=27% Similarity=0.255 Sum_probs=36.0
Q ss_pred CCccccchhHHHHHHHHhc----cccc---ccC-----CCeEEEEEEecCCCcHHHHHHHHHh
Q 003037 96 VSEVRGRDEEKNTLKSKLL----CESS---EQQ-----NAVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~----~~~~---~~~-----~~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
...+||.++.++.+...+. .... ... -....|.++|++|+|||++|+.++.
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 3468999999998876652 1000 000 1135789999999999999999986
No 403
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.04 E-value=0.19 Score=59.06 Aligned_cols=158 Identities=14% Similarity=0.141 Sum_probs=80.3
Q ss_pred CccccchhHHHHHHHHhcccccc------cCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHH
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSE------QQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFR 170 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 170 (854)
.++.|.+...+++.+.+...... ...-.+-|.|+|++|+|||++|+.++.. ....| +.++.. .
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~--~~~~f-----~~is~~----~ 220 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF-----FTISGS----D 220 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCCE-----EEEehH----H
Confidence 35677776666655543221100 0112344889999999999999999884 32233 222211 1
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCc----------ChhhHHHHHH----hhcCC--CCCc
Q 003037 171 IAKAIIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTE----------DYNKWETFQR----CLKNG--LRGS 234 (854)
Q Consensus 171 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------~~~~~~~l~~----~l~~~--~~gs 234 (854)
+. ..... .....+...+.......+++|++|+++.- ....++.... .+... ..+.
T Consensus 221 ~~----~~~~g-----~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~v 291 (644)
T PRK10733 221 FV----EMFVG-----VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 291 (644)
T ss_pred hH----Hhhhc-----ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCe
Confidence 11 11100 01112223333333456899999998431 0112222222 22221 2344
Q ss_pred EEEEecccHHHHhh--cc---CcceEecCCCCHHHHHHHHHHHhc
Q 003037 235 KILVTTRKMTVAQM--MQ---SNDVILIRELSEQACWSLFEQLAF 274 (854)
Q Consensus 235 ~ilvTtR~~~v~~~--~~---~~~~~~l~~L~~~e~~~l~~~~~~ 274 (854)
-+|.||...+.... .. -...+.+..-+.++-.+++..+..
T Consensus 292 ivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 292 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred eEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 45557766553322 11 145677887787777788777653
No 404
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.04 E-value=0.29 Score=48.53 Aligned_cols=25 Identities=44% Similarity=0.562 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.-.+++|+|..|+|||||++.++.-
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999873
No 405
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.03 E-value=0.014 Score=51.06 Aligned_cols=21 Identities=43% Similarity=0.524 Sum_probs=18.9
Q ss_pred EEEEecCCCcHHHHHHHHHhc
Q 003037 127 ISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 127 v~I~G~gGiGKTtLa~~v~~~ 147 (854)
|.|+|.+|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999998874
No 406
>PRK04328 hypothetical protein; Provisional
Probab=95.02 E-value=0.097 Score=53.67 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=31.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDP 165 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 165 (854)
.-.++.|.|.+|+|||+||.++... ....-..++|++..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~--~~~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEEeeCC
Confidence 5678999999999999999876653 2223456888887763
No 407
>PRK05973 replicative DNA helicase; Provisional
Probab=94.99 E-value=0.34 Score=48.69 Aligned_cols=148 Identities=16% Similarity=0.134 Sum_probs=74.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCC-----------CCCccHHH
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGST-----------PSLGELNS 191 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----------~~~~~~~~ 191 (854)
.-.++.|.|.+|+|||++|.++... ....-..+++++.... ..++...+.. ++.+. .+....+.
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~--~a~~Ge~vlyfSlEes--~~~i~~R~~s-~g~d~~~~~~~~~~d~~d~~~~~~ 137 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVE--AMKSGRTGVFFTLEYT--EQDVRDRLRA-LGADRAQFADLFEFDTSDAICADY 137 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEEeCC--HHHHHHHHHH-cCCChHHhccceEeecCCCCCHHH
Confidence 4567889999999999999887664 2222346777776653 4555555432 22211 11122333
Q ss_pred HHHHHHHHhcCCeEEEEEecCCCc----ChhhHHHHHHhhcC--CCCCcEEEEecccHHHHhh-ccCcceEecCCCCHHH
Q 003037 192 LLERIYASIARKKFLLVLDDVWTE----DYNKWETFQRCLKN--GLRGSKILVTTRKMTVAQM-MQSNDVILIRELSEQA 264 (854)
Q Consensus 192 ~~~~l~~~l~~k~~LlVlDdv~~~----~~~~~~~l~~~l~~--~~~gs~ilvTtR~~~v~~~-~~~~~~~~l~~L~~~e 264 (854)
+...+... .+.-++|+|-+..- +......+...+.. ...|.-||+|+.-..-... ......+.=-.++..-
T Consensus 138 ii~~l~~~--~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~sQl~r~~e~~~~~~P~laDlR~~~~~ 215 (237)
T PRK05973 138 IIARLASA--PRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFISQIDRSFDPSAKPLPDIRDVRLPNPL 215 (237)
T ss_pred HHHHHHHh--hCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEecCccccccCCCCCCChhhcCCCChh
Confidence 33333331 23458999987321 11112222111211 2367778888764332211 1111111111234455
Q ss_pred HHHHHHHHhcCCC
Q 003037 265 CWSLFEQLAFFGR 277 (854)
Q Consensus 265 ~~~l~~~~~~~~~ 277 (854)
-..||.+..|.+.
T Consensus 216 d~~~f~~~~~~~~ 228 (237)
T PRK05973 216 DLSLFDKACFLNN 228 (237)
T ss_pred hHHHhhhhheecC
Confidence 5678877777543
No 408
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.97 E-value=0.17 Score=47.24 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHhc
Q 003037 126 VISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
++.|+|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999874
No 409
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.94 E-value=0.035 Score=50.07 Aligned_cols=40 Identities=25% Similarity=0.191 Sum_probs=28.5
Q ss_pred hHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 104 EEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 104 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
++.+++-+.|...- ....+|.+.|.-|+||||+++.+++.
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 34445555544321 13458999999999999999999985
No 410
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.94 E-value=0.15 Score=56.78 Aligned_cols=89 Identities=15% Similarity=0.136 Sum_probs=48.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCc-cCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDP-FDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIA 201 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 201 (854)
+.+|++++|+.|+||||++.+++.....+..-..+..+..... ....+-++...+.++.......+..+....+ ..++
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~ 333 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELR 333 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-Hhcc
Confidence 4579999999999999999988874222211123445554331 2334445555566554432222222222222 2344
Q ss_pred CCeEEEEEecCC
Q 003037 202 RKKFLLVLDDVW 213 (854)
Q Consensus 202 ~k~~LlVlDdv~ 213 (854)
++ -.+++|-.-
T Consensus 334 d~-d~VLIDTaG 344 (484)
T PRK06995 334 NK-HIVLIDTIG 344 (484)
T ss_pred CC-CeEEeCCCC
Confidence 44 477788764
No 411
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.93 E-value=0.29 Score=48.50 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.-.+++|+|..|.|||||++.++..
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4468999999999999999999873
No 412
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.93 E-value=0.57 Score=47.72 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.-.+++|+|..|+|||||++.++.-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 28 PGKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 4568999999999999999999873
No 413
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=94.91 E-value=0.48 Score=48.22 Aligned_cols=52 Identities=13% Similarity=0.343 Sum_probs=32.1
Q ss_pred HHHHhcCCeEEEEEecCCC-cChhhHHHHHHhhcCCCCCcEEEEecccHHHHh
Q 003037 196 IYASIARKKFLLVLDDVWT-EDYNKWETFQRCLKNGLRGSKILVTTRKMTVAQ 247 (854)
Q Consensus 196 l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 247 (854)
+.+.+..++-++++|+-.. -+....+.+...+.....|..||++|.+.....
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~ 201 (237)
T cd03252 149 IARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK 201 (237)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH
Confidence 3445556778999999743 233444455555543334667888888776654
No 414
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.91 E-value=0.27 Score=48.67 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.-.+++|+|..|.|||||.+.+...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999998863
No 415
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=94.91 E-value=0.42 Score=49.27 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.-.+++|+|..|+|||||++.++.-
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999863
No 416
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.90 E-value=0.29 Score=51.04 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.-.+++|+|..|+|||||++.+..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G 53 (274)
T PRK13647 30 EGSKTALLGPNGAGKSTLLLHLNG 53 (274)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 456899999999999999999986
No 417
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.88 E-value=0.051 Score=56.31 Aligned_cols=52 Identities=17% Similarity=0.142 Sum_probs=39.8
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHH
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIE 177 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 177 (854)
+.-+++.|+|.+|+|||++|.++... .......++||+..+. ...+.+.+.+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~--~~~~ge~vlyvs~~e~--~~~l~~~~~~ 72 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYE--GAREGEPVLYVSTEES--PEELLENARS 72 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHH--HHhcCCcEEEEEecCC--HHHHHHHHHH
Confidence 46789999999999999999888773 4555788999998873 4555544443
No 418
>PRK15453 phosphoribulokinase; Provisional
Probab=94.88 E-value=0.13 Score=52.42 Aligned_cols=78 Identities=17% Similarity=0.069 Sum_probs=44.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCcc--CHHHHHHHHH--HHhcC--CC--CCCccHHHHHH
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPF--DEFRIAKAII--EALEG--ST--PSLGELNSLLE 194 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~--~~l~~--~~--~~~~~~~~~~~ 194 (854)
+..+|+|.|.+|+||||+|+.+.+. ....-...+.++....+ +....-..+. +.-+. +. ++..+.+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~i--f~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~ 81 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKI--FRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQ 81 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 5689999999999999999988862 21111123444443322 3222222221 11111 12 45567777777
Q ss_pred HHHHHhcC
Q 003037 195 RIYASIAR 202 (854)
Q Consensus 195 ~l~~~l~~ 202 (854)
.++++.++
T Consensus 82 ~l~~l~~~ 89 (290)
T PRK15453 82 LFREYGET 89 (290)
T ss_pred HHHHHhcC
Confidence 77776553
No 419
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.86 E-value=0.13 Score=50.51 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=26.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHhcccccccc--------CeeEEEEeCCc
Q 003037 125 QVISLVGMGGIGKTTLAQFAYNNNDVINHF--------EKRIWVCVSDP 165 (854)
Q Consensus 125 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--------~~~~wv~~s~~ 165 (854)
.++.|+|.+|+||||++..+.........| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 478899999999999997776642221112 36778877664
No 420
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.85 E-value=0.18 Score=59.09 Aligned_cols=89 Identities=17% Similarity=0.146 Sum_probs=52.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCc-cCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDP-FDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIA 201 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 201 (854)
..+++.++|+.|+||||++.+++...........+..++.... ....+.++...+.++.......+.+++...+. .++
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~-~~~ 262 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALA-ALG 262 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH-Hhc
Confidence 3579999999999999999888864211111124555554321 12445566666666655433345555555454 344
Q ss_pred CCeEEEEEecCC
Q 003037 202 RKKFLLVLDDVW 213 (854)
Q Consensus 202 ~k~~LlVlDdv~ 213 (854)
++ =++++|=.-
T Consensus 263 ~~-D~VLIDTAG 273 (767)
T PRK14723 263 DK-HLVLIDTVG 273 (767)
T ss_pred CC-CEEEEeCCC
Confidence 44 477778663
No 421
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.85 E-value=0.44 Score=47.15 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.-.+++|+|..|+|||||++.+...
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhccc
Confidence 4568999999999999999998874
No 422
>PRK13949 shikimate kinase; Provisional
Probab=94.83 E-value=0.25 Score=47.17 Aligned_cols=22 Identities=45% Similarity=0.480 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHhc
Q 003037 126 VISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
-|.|+|++|+||||+++.++..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999884
No 423
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.83 E-value=0.019 Score=59.44 Aligned_cols=93 Identities=24% Similarity=0.293 Sum_probs=46.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCe
Q 003037 125 QVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIARKK 204 (854)
Q Consensus 125 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 204 (854)
+-+.++|+.|+|||++++...+.... ..| .+.-++.+...+...+ +.+++.-...... .. ..--.+|+
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~-~~~-~~~~~~~s~~Tts~~~-q~~ie~~l~k~~~-~~--------~gP~~~k~ 101 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDS-DKY-LVITINFSAQTTSNQL-QKIIESKLEKRRG-RV--------YGPPGGKK 101 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTT-CCE-EEEEEES-TTHHHHHH-HHCCCTTECECTT-EE--------EEEESSSE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCc-ccc-ceeEeeccCCCCHHHH-HHHHhhcEEcCCC-CC--------CCCCCCcE
Confidence 45689999999999999998864221 112 2334555554333333 2222211100000 00 00013789
Q ss_pred EEEEEecCCCcChh------hHHHHHHhhcC
Q 003037 205 FLLVLDDVWTEDYN------KWETFQRCLKN 229 (854)
Q Consensus 205 ~LlVlDdv~~~~~~------~~~~l~~~l~~ 229 (854)
.++++||+--...+ ..+-+++.+..
T Consensus 102 lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~ 132 (272)
T PF12775_consen 102 LVLFIDDLNMPQPDKYGTQPPIELLRQLIDY 132 (272)
T ss_dssp EEEEEETTT-S---TTS--HHHHHHHHHHHC
T ss_pred EEEEecccCCCCCCCCCCcCHHHHHHHHHHh
Confidence 99999998433222 34555555544
No 424
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.83 E-value=0.037 Score=65.92 Aligned_cols=24 Identities=21% Similarity=0.138 Sum_probs=21.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
+.+++.|+|+.|.||||+.+.+.-
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~ 344 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGL 344 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHH
Confidence 347899999999999999988865
No 425
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.82 E-value=0.17 Score=57.51 Aligned_cols=54 Identities=19% Similarity=0.193 Sum_probs=37.4
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhc
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALE 180 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 180 (854)
..-.++.|.|.+|+|||||+.+++.. ....-+.+++++..+ +..++..++ +.++
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~--~~~~ge~~~y~s~eE--s~~~i~~~~-~~lg 314 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLEN--ACANKERAILFAYEE--SRAQLLRNA-YSWG 314 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeC--CHHHHHHHH-HHcC
Confidence 36788999999999999999888774 223335677777665 455555553 4443
No 426
>PRK03839 putative kinase; Provisional
Probab=94.78 E-value=0.022 Score=55.28 Aligned_cols=22 Identities=32% Similarity=0.676 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHHhc
Q 003037 126 VISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.|.|+|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999984
No 427
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.78 E-value=0.48 Score=47.74 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.-.+++|.|..|+|||||++.++..
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4468999999999999999999873
No 428
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.75 E-value=0.24 Score=48.85 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=23.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.+..+|.|+|++|+||||||+.+...
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999999873
No 429
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.72 E-value=0.25 Score=49.24 Aligned_cols=21 Identities=38% Similarity=0.559 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHh
Q 003037 126 VISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~ 146 (854)
+++|+|..|+|||||++.++.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhC
Confidence 899999999999999999986
No 430
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.71 E-value=0.26 Score=48.48 Aligned_cols=22 Identities=23% Similarity=0.143 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHh
Q 003037 125 QVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 125 ~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
++++|+|+.|.|||||.+.+.-
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999988875
No 431
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=94.70 E-value=0.32 Score=50.00 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.-.+++|+|..|.|||||++.++..
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999874
No 432
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.69 E-value=0.037 Score=56.07 Aligned_cols=67 Identities=25% Similarity=0.216 Sum_probs=47.4
Q ss_pred HHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHH
Q 003037 107 NTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIE 177 (854)
Q Consensus 107 ~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 177 (854)
.+|+..+... .++..+|+|.|.||+|||||.-.+......+++--.++=|+-|++++--.++-+=.+
T Consensus 38 ~~ll~~l~p~----tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiR 104 (323)
T COG1703 38 RELLRALYPR----TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIR 104 (323)
T ss_pred HHHHHHHhhc----CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhh
Confidence 4555555543 347889999999999999999888776545555556667777777776666554443
No 433
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.69 E-value=0.038 Score=54.77 Aligned_cols=37 Identities=16% Similarity=0.067 Sum_probs=22.2
Q ss_pred cccCccEEEEecccCCCC----CC-CCCCCCCCCEEEEcCCC
Q 003037 694 SLNKLKKLVLYQFYLCDT----MP-PLGKLPSLEILEIRGNW 730 (854)
Q Consensus 694 ~l~~L~~L~L~~~~~~~~----l~-~l~~L~~L~~L~L~~~~ 730 (854)
.+++|+.|+|.+|.+... +. .+..++.|+.|.+.+|-
T Consensus 212 y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 212 YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred HhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 466777777777654321 11 14455667777777775
No 434
>PRK04040 adenylate kinase; Provisional
Probab=94.69 E-value=0.027 Score=54.85 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=21.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhc
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
..+|+|+|++|+||||+++.+.+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 358999999999999999999874
No 435
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.67 E-value=0.042 Score=63.51 Aligned_cols=76 Identities=12% Similarity=0.097 Sum_probs=56.4
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAI 175 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 175 (854)
-++++|.++.++.|...+.. .+.+.|+|.+|+||||+|+.+.+.. ...+++..+|..-+ ..+...+++.+
T Consensus 30 ~~~vigq~~a~~~L~~~~~~--------~~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~np-~~~~~~~~~~v 99 (637)
T PRK13765 30 IDQVIGQEHAVEVIKKAAKQ--------RRHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPNP-EDPNNPKIRTV 99 (637)
T ss_pred HHHcCChHHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeCC-CcchHHHHHHH
Confidence 45789999999988887752 2368899999999999999998742 23345778886653 34677777777
Q ss_pred HHHhcC
Q 003037 176 IEALEG 181 (854)
Q Consensus 176 ~~~l~~ 181 (854)
+..++.
T Consensus 100 ~~~~G~ 105 (637)
T PRK13765 100 PAGKGK 105 (637)
T ss_pred HHhcCH
Confidence 776654
No 436
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=94.67 E-value=0.45 Score=50.38 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.-.+++|+|+.|.|||||.+.+...
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999863
No 437
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=0.62 Score=45.63 Aligned_cols=66 Identities=14% Similarity=0.176 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCCeEEEEEecCCC-cChhhHHHHHHhhcC-CCCCcEEEEecccHHHHhhccCcceEe
Q 003037 191 SLLERIYASIARKKFLLVLDDVWT-EDYNKWETFQRCLKN-GLRGSKILVTTRKMTVAQMMQSNDVIL 256 (854)
Q Consensus 191 ~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~-~~~gs~ilvTtR~~~v~~~~~~~~~~~ 256 (854)
.-...+.+.+.-++-+.|||...+ -+.+..+.+...+.. ...|+-+||.|-.+.++....++.++-
T Consensus 150 kKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhv 217 (251)
T COG0396 150 KKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHV 217 (251)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEE
Confidence 344455566666788999998743 123344444333332 124666777777788887766554443
No 438
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=94.65 E-value=0.21 Score=49.39 Aligned_cols=60 Identities=13% Similarity=0.215 Sum_probs=35.2
Q ss_pred HHHHhcCCeEEEEEecCCC-cChhhHH-HHHHhhcCCC-C-CcEEEEecccHHHHhhccCcceEec
Q 003037 196 IYASIARKKFLLVLDDVWT-EDYNKWE-TFQRCLKNGL-R-GSKILVTTRKMTVAQMMQSNDVILI 257 (854)
Q Consensus 196 l~~~l~~k~~LlVlDdv~~-~~~~~~~-~l~~~l~~~~-~-gs~ilvTtR~~~v~~~~~~~~~~~l 257 (854)
+.+.+..++-++++|+.-. -+....+ .+...+.... . |..||++|.+...... .+..+.+
T Consensus 132 la~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~--~d~i~~l 195 (204)
T cd03240 132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA--ADHIYRV 195 (204)
T ss_pred HHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh--CCEEEEE
Confidence 4556677889999999743 2333344 4555444322 2 5568888887766543 3344444
No 439
>PLN02348 phosphoribulokinase
Probab=94.64 E-value=0.14 Score=55.04 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=23.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
++..+|+|.|.+|+||||+|+.+.+.
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~ 72 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSV 72 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999874
No 440
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.63 E-value=0.07 Score=50.79 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHhc
Q 003037 125 QVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 125 ~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
+.|.+.|.+|+||||+|++++..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~ 24 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKE 24 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHH
Confidence 36789999999999999999873
No 441
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.62 E-value=0.15 Score=56.03 Aligned_cols=87 Identities=17% Similarity=0.120 Sum_probs=47.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCC------CCCCccHHH-----
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGS------TPSLGELNS----- 191 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~------~~~~~~~~~----- 191 (854)
.-..++|+|..|+|||||++.+.... .....++++.-....++..+....+...... ..+......
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 45578999999999999999888632 2223444443323334544444333332110 111111111
Q ss_pred HHHHHHHHh--cCCeEEEEEecC
Q 003037 192 LLERIYASI--ARKKFLLVLDDV 212 (854)
Q Consensus 192 ~~~~l~~~l--~~k~~LlVlDdv 212 (854)
..-.+.+++ +++.+|+++||+
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 111223333 488999999998
No 442
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.61 E-value=0.019 Score=50.87 Aligned_cols=27 Identities=37% Similarity=0.493 Sum_probs=18.6
Q ss_pred EEEEecCCCcHHHHHHHHHhccccccccC
Q 003037 127 ISLVGMGGIGKTTLAQFAYNNNDVINHFE 155 (854)
Q Consensus 127 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~ 155 (854)
|.|+|.+|+||||+|+.++.. +...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~--~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARS--LGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHH--TT--EE
T ss_pred EeeECCCccHHHHHHHHHHHH--cCCcee
Confidence 679999999999999999983 556663
No 443
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.61 E-value=0.17 Score=53.74 Aligned_cols=82 Identities=23% Similarity=0.230 Sum_probs=53.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCC-----CCccHHHHHHHHH
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTP-----SLGELNSLLERIY 197 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 197 (854)
.-.+|.|-|-+|||||||.-+++.+ ....- .+.+|+-.+. ..+ .+--++.|+.... ...+++++...+.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~--lA~~~-~vLYVsGEES--~~Q-iklRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRG-KVLYVSGEES--LQQ-IKLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHH--HHhcC-cEEEEeCCcC--HHH-HHHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 4578999999999999999988884 43333 6777765543 322 2333455654322 2245555555444
Q ss_pred HHhcCCeEEEEEecCC
Q 003037 198 ASIARKKFLLVLDDVW 213 (854)
Q Consensus 198 ~~l~~k~~LlVlDdv~ 213 (854)
+ .++-++|+|-+.
T Consensus 166 ~---~~p~lvVIDSIQ 178 (456)
T COG1066 166 Q---EKPDLVVIDSIQ 178 (456)
T ss_pred h---cCCCEEEEeccc
Confidence 4 678899999984
No 444
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=94.60 E-value=0.33 Score=57.65 Aligned_cols=131 Identities=15% Similarity=0.170 Sum_probs=76.5
Q ss_pred hhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCC
Q 003037 103 DEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGS 182 (854)
Q Consensus 103 ~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 182 (854)
.+.+++|.+.+. ...|+.|+|..|+||||-.-+++-+.-. ...+.+-++=........+.+.+++.++..
T Consensus 52 ~~~~~~i~~ai~--------~~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~ 121 (845)
T COG1643 52 TAVRDEILKAIE--------QNQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEK 121 (845)
T ss_pred HHHHHHHHHHHH--------hCCEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCC
Confidence 356778888875 5678999999999999999666653111 112333333333445667888888888764
Q ss_pred CCC-------------------CccHHHHHHHHH-HHhcCCeEEEEEecCCCcChhhHHHHHHh----hcCCCCCcEEEE
Q 003037 183 TPS-------------------LGELNSLLERIY-ASIARKKFLLVLDDVWTEDYNKWETFQRC----LKNGLRGSKILV 238 (854)
Q Consensus 183 ~~~-------------------~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~~~~~~~~l~~~----l~~~~~gs~ilv 238 (854)
..+ ..+...+...++ +.+-.+--.+|+|.+++-.. +-+-+... +......-||||
T Consensus 122 ~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl-~tDilLgllk~~~~~rr~DLKiIi 200 (845)
T COG1643 122 LGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSL-NTDILLGLLKDLLARRRDDLKLII 200 (845)
T ss_pred cCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhH-HHHHHHHHHHHHHhhcCCCceEEE
Confidence 211 011223333333 33334556899999965321 22222222 233334589999
Q ss_pred ecccHH
Q 003037 239 TTRKMT 244 (854)
Q Consensus 239 TtR~~~ 244 (854)
+|-.-+
T Consensus 201 mSATld 206 (845)
T COG1643 201 MSATLD 206 (845)
T ss_pred EecccC
Confidence 987543
No 445
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.59 E-value=0.02 Score=56.78 Aligned_cols=79 Identities=19% Similarity=0.222 Sum_probs=52.9
Q ss_pred hhhhcCCCcccEEEecCCCCccccccccccccccccccCCCceeeecCC--CCc-ccchhhhcCCCCcEEeecCcccccc
Q 003037 501 PVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWL--DIE-ELPETCCELFNVQTLEVLDCRSFRR 577 (854)
Q Consensus 501 ~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~--~i~-~lP~~i~~L~~L~~L~l~~~~~l~~ 577 (854)
......+..|+.|++.++. ++.+ ..+..|++|++|.++.| .+. .++....++++|++|++++|+ ++.
T Consensus 36 ~gl~d~~~~le~ls~~n~g--------ltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~ 105 (260)
T KOG2739|consen 36 GGLTDEFVELELLSVINVG--------LTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKD 105 (260)
T ss_pred ccccccccchhhhhhhccc--------eeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccc
Confidence 3334566677777777766 4443 23556889999999999 444 677677788999999999998 443
Q ss_pred cccccccCCCCcc
Q 003037 578 LPQGFGKLVNLRN 590 (854)
Q Consensus 578 lp~~i~~L~~L~~ 590 (854)
+..+.-+++|+.
T Consensus 106 -lstl~pl~~l~n 117 (260)
T KOG2739|consen 106 -LSTLRPLKELEN 117 (260)
T ss_pred -ccccchhhhhcc
Confidence 333433333333
No 446
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.57 E-value=0.38 Score=49.68 Aligned_cols=87 Identities=18% Similarity=0.085 Sum_probs=47.6
Q ss_pred CCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCC-------CCccHHHHH
Q 003037 121 QNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTP-------SLGELNSLL 193 (854)
Q Consensus 121 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-------~~~~~~~~~ 193 (854)
..+..+|.|+|.+|+|||||+..+.+. ...... ++.+ ..+..+..+ . +.++..+.+.. -..+...+.
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~--l~~~~~-~~VI-~gD~~t~~D-a-~rI~~~g~pvvqi~tG~~Chl~a~mv~ 174 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMR--LKDSVP-CAVI-EGDQQTVND-A-ARIRATGTPAIQVNTGKGCHLDAQMIA 174 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHH--hccCCC-EEEE-CCCcCcHHH-H-HHHHhcCCcEEEecCCCCCcCcHHHHH
Confidence 346899999999999999999999884 333332 2222 222222221 1 12333332210 012333444
Q ss_pred HHHHHHhcCCeEEEEEecCC
Q 003037 194 ERIYASIARKKFLLVLDDVW 213 (854)
Q Consensus 194 ~~l~~~l~~k~~LlVlDdv~ 213 (854)
..+........-++|++++-
T Consensus 175 ~Al~~L~~~~~d~liIEnvG 194 (290)
T PRK10463 175 DAAPRLPLDDNGILFIENVG 194 (290)
T ss_pred HHHHHHhhcCCcEEEEECCC
Confidence 55555444445688899984
No 447
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.56 E-value=0.59 Score=46.74 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.-.+++|+|..|.|||||++.++..
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4457999999999999999999874
No 448
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.56 E-value=0.062 Score=57.97 Aligned_cols=52 Identities=21% Similarity=0.271 Sum_probs=38.2
Q ss_pred CCccccchhHHHHHHHHhccc--------ccccCCCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 96 VSEVRGRDEEKNTLKSKLLCE--------SSEQQNAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
...++|.++.++.+..++... ........+.|.++|++|+|||+||+.+...
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999998877531 0000112467899999999999999999884
No 449
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.55 E-value=0.029 Score=54.91 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
+.++|.|+|++|+||||+|+.++.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999986
No 450
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.55 E-value=0.55 Score=46.52 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.-.+++|.|..|.|||||++.+..-
T Consensus 30 ~G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 30 KGELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 4568999999999999999999874
No 451
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.54 E-value=0.17 Score=49.89 Aligned_cols=95 Identities=20% Similarity=0.289 Sum_probs=56.1
Q ss_pred CccccchhHHHHHHHHhcccccc-------cCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHH
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSE-------QQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEF 169 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 169 (854)
+.+=|=.+++++|.+...-+--+ +-+.++-|.++|++|.|||-+|++|+|. ....| +.|-.
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanr--tdacf-----irvig----- 244 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANR--TDACF-----IRVIG----- 244 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcc--cCceE-----Eeehh-----
Confidence 34566778888887765432110 1345677889999999999999999993 44444 32221
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcC-CeEEEEEecC
Q 003037 170 RIAKAIIEALEGSTPSLGELNSLLERIYASIAR-KKFLLVLDDV 212 (854)
Q Consensus 170 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv 212 (854)
.++.+.-- .+.......+.+..+. |.++|+||.+
T Consensus 245 ---selvqkyv------gegarmvrelf~martkkaciiffdei 279 (435)
T KOG0729|consen 245 ---SELVQKYV------GEGARMVRELFEMARTKKACIIFFDEI 279 (435)
T ss_pred ---HHHHHHHh------hhhHHHHHHHHHHhcccceEEEEeecc
Confidence 11211111 1122344555555554 5678888887
No 452
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.52 E-value=0.059 Score=54.50 Aligned_cols=48 Identities=29% Similarity=0.336 Sum_probs=31.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccc-cCeeEEEEeCCccCHHHHHHH
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINH-FEKRIWVCVSDPFDEFRIAKA 174 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~s~~~~~~~~~~~ 174 (854)
...++.|.|.+|+|||++|.++... .... =+.++|++..+. ...+.+.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~--~~~~~ge~vlyvs~ee~--~~~l~~~ 66 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYN--GLKNFGEKVLYVSFEEP--PEELIEN 66 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHHHT--EEEEESSS---HHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH--hhhhcCCcEEEEEecCC--HHHHHHH
Confidence 5678999999999999999776643 2222 346788887654 3444443
No 453
>PRK00625 shikimate kinase; Provisional
Probab=94.52 E-value=0.027 Score=53.91 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHHhc
Q 003037 126 VISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.|.|+||+|+||||+++.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999873
No 454
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=94.50 E-value=0.26 Score=50.99 Aligned_cols=56 Identities=18% Similarity=0.208 Sum_probs=39.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcC
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEG 181 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 181 (854)
.-.++.|-|.+|+|||++|.+++.+.-..+ -..++|++... +.+++..+++.....
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~-~~~vly~SlEm--~~~~l~~R~la~~s~ 73 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALNG-GYPVLYFSLEM--SEEELAARLLARLSG 73 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHTT-SSEEEEEESSS---HHHHHHHHHHHHHT
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHhc-CCeEEEEcCCC--CHHHHHHHHHHHhhc
Confidence 345788899999999999988887633322 25677776654 667788888777654
No 455
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.50 E-value=0.42 Score=52.40 Aligned_cols=26 Identities=35% Similarity=0.364 Sum_probs=22.4
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
..+.+|.++|..|+||||+|..++..
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~ 123 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYY 123 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34789999999999999999888763
No 456
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=94.50 E-value=0.083 Score=55.70 Aligned_cols=64 Identities=16% Similarity=0.214 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCCeEEEEEecCCCc-ChhhHHHHHHhhcCC--CCCcEEEEecccHHHHhhccCcceE
Q 003037 192 LLERIYASIARKKFLLVLDDVWTE-DYNKWETFQRCLKNG--LRGSKILVTTRKMTVAQMMQSNDVI 255 (854)
Q Consensus 192 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~~~~~~~~~ 255 (854)
-...|.+.+..++-+++.|..... |......+...+..- ..|+.+++.|+.+++.+.+.++..+
T Consensus 514 eR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li 580 (593)
T COG2401 514 ERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLI 580 (593)
T ss_pred HHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeE
Confidence 345667778888889999986321 111222233333322 2577788888888888887665443
No 457
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=94.49 E-value=0.12 Score=61.21 Aligned_cols=132 Identities=17% Similarity=0.123 Sum_probs=72.6
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAI 175 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 175 (854)
-+.++|.+..+.++.+.+..... ...-|.|+|..|+||+++|+.+.+..... -...+.|++..-. ...+...+
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~~A~~ih~~s~r~--~~pfv~vnc~~~~-~~~~~~el 396 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAK----SSFPVLLCGEEGVGKALLAQAIHNESERA--AGPYIAVNCQLYP-DEALAEEF 396 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCcCHHHHHHHHHHhCCcc--CCCeEEEECCCCC-hHHHHHHh
Confidence 35689999888888887765443 23337799999999999999998742111 1122344444332 22222222
Q ss_pred HHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCC-----------CCcEEEEeccc
Q 003037 176 IEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGL-----------RGSKILVTTRK 242 (854)
Q Consensus 176 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~ 242 (854)
+......... .. ...+ -....=.|+||++..-.......+...+..+. ...|||.||..
T Consensus 397 fg~~~~~~~~-~~----~g~~---~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 397 LGSDRTDSEN-GR----LSKF---ELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred cCCCCcCccC-CC----CCce---eECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccC
Confidence 2111000000 00 0000 01223469999997766666777777775432 13467777654
No 458
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.49 E-value=0.076 Score=57.27 Aligned_cols=107 Identities=15% Similarity=0.151 Sum_probs=58.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCC
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIARK 203 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 203 (854)
...+.|.|+.|+||||+++.+.+. +.......++. +.+.. +...... ..+-.......+.......++..++..
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~t-iEdp~--E~~~~~~-~~~i~q~evg~~~~~~~~~l~~~lr~~ 195 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDY--INKNAAGHIIT-IEDPI--EYVHRNK-RSLINQREVGLDTLSFANALRAALRED 195 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEE-EcCCh--hhhccCc-cceEEccccCCCCcCHHHHHHHhhccC
Confidence 467999999999999999988873 33334444443 22221 1111000 000001001111223556677788889
Q ss_pred eEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecc
Q 003037 204 KFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTR 241 (854)
Q Consensus 204 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR 241 (854)
+=.|++|.+. +.+.+....... ..|..++.|.-
T Consensus 196 pd~i~vgEir--d~~~~~~~l~aa---~tGh~v~~T~H 228 (343)
T TIGR01420 196 PDVILIGEMR--DLETVELALTAA---ETGHLVFGTLH 228 (343)
T ss_pred CCEEEEeCCC--CHHHHHHHHHHH---HcCCcEEEEEc
Confidence 9999999994 334454433332 23544555554
No 459
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.49 E-value=0.037 Score=55.58 Aligned_cols=21 Identities=38% Similarity=0.602 Sum_probs=19.3
Q ss_pred EEEEecCCCcHHHHHHHHHhc
Q 003037 127 ISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 127 v~I~G~gGiGKTtLa~~v~~~ 147 (854)
|.|.|++|+||||+|+.++..
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999873
No 460
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=94.49 E-value=0.48 Score=47.71 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.-.+++|+|..|.|||||++.++..
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999873
No 461
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.48 E-value=0.051 Score=48.81 Aligned_cols=70 Identities=19% Similarity=0.187 Sum_probs=41.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCC
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIARK 203 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 203 (854)
..-|.|.|.+|+||||+|.+++.. + ..-|+++|+-..-..+....=+.. ....-+-+.+.+.|...+.+.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~------~-~~~~i~isd~vkEn~l~~gyDE~y---~c~i~DEdkv~D~Le~~m~~G 76 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEK------T-GLEYIEISDLVKENNLYEGYDEEY---KCHILDEDKVLDELEPLMIEG 76 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHH------h-CCceEehhhHHhhhcchhcccccc---cCccccHHHHHHHHHHHHhcC
Confidence 345789999999999999999862 1 235777776433322222222211 122345556666666665543
No 462
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.45 E-value=0.22 Score=50.89 Aligned_cols=54 Identities=11% Similarity=0.130 Sum_probs=37.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEAL 179 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 179 (854)
.-.++.|.|.+|+|||++|.+++.+.- ..+=..++|++... +..++..+++...
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~-~~~g~~vly~s~E~--~~~~~~~r~~~~~ 65 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIA-KKQGKPVLFFSLEM--SKEQLLQRLLASE 65 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH-HhCCCceEEEeCCC--CHHHHHHHHHHHh
Confidence 456899999999999999988766422 22134677887766 5667777776443
No 463
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.43 E-value=0.34 Score=50.70 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.-.+++|+|..|+|||||++.++.-
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (279)
T PRK13650 32 QGEWLSIIGHNGSGKSTTVRLIDGL 56 (279)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999873
No 464
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.42 E-value=0.025 Score=58.30 Aligned_cols=23 Identities=35% Similarity=0.299 Sum_probs=18.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHhc
Q 003037 125 QVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 125 ~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
+.|.|.|.+|+||||+|+++...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 46889999999999999998874
No 465
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.41 E-value=0.022 Score=33.42 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=18.0
Q ss_pred cccEEEecCCCCcccccccccccccccccc
Q 003037 509 CLRTLKITGISGEKRYFRIIVEIPKEIKKL 538 (854)
Q Consensus 509 ~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L 538 (854)
+|++|+|++|. ++.+|..|++|
T Consensus 1 ~L~~Ldls~n~--------l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNN--------LTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSE--------ESEEGTTTTT-
T ss_pred CccEEECCCCc--------CEeCChhhcCC
Confidence 58999999998 88999887654
No 466
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.41 E-value=0.23 Score=55.51 Aligned_cols=40 Identities=25% Similarity=0.244 Sum_probs=30.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCC
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSD 164 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 164 (854)
.-.++.|.|.+|+|||||+.+++.. ....-..++|++..+
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~--~a~~g~~vlYvs~Ee 118 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAAR--LAAAGGKVLYVSGEE 118 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccc
Confidence 4668999999999999999888774 222224677887654
No 467
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.41 E-value=1.1 Score=45.29 Aligned_cols=97 Identities=21% Similarity=0.278 Sum_probs=59.4
Q ss_pred CCccccchhHHHHHHHHhcccc------cccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCES------SEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEF 169 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 169 (854)
-+.+-|-+...+.|.+...-+- .+....-+-|.++|++|.||+-||++|+...- . -|.+||...-+.
T Consensus 132 WsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--S-----TFFSvSSSDLvS 204 (439)
T KOG0739|consen 132 WSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--S-----TFFSVSSSDLVS 204 (439)
T ss_pred hhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--C-----ceEEeehHHHHH
Confidence 3457788888888877654221 11123467899999999999999999998422 2 245555432111
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHHh-cCCeEEEEEecCC
Q 003037 170 RIAKAIIEALEGSTPSLGELNSLLERIYASI-ARKKFLLVLDDVW 213 (854)
Q Consensus 170 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~ 213 (854)
..++ +.+.+...|.+.. +.|+-+|++|.+.
T Consensus 205 -------KWmG-------ESEkLVknLFemARe~kPSIIFiDEiD 235 (439)
T KOG0739|consen 205 -------KWMG-------ESEKLVKNLFEMARENKPSIIFIDEID 235 (439)
T ss_pred -------HHhc-------cHHHHHHHHHHHHHhcCCcEEEeehhh
Confidence 1111 2234444454443 3678899999884
No 468
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.40 E-value=0.4 Score=55.53 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.-..++|+|+.|+|||||++.+..
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 556899999999999999999976
No 469
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.40 E-value=0.22 Score=57.64 Aligned_cols=119 Identities=13% Similarity=0.099 Sum_probs=61.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhccc-cccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCC---ccHHHHHHHHHHH
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNNND-VINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSL---GELNSLLERIYAS 199 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~~ 199 (854)
.++..|.|.+|.||||++..+..... ....-...+.+......-...+.+.+...+..-.... ..+.....-+.+.
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrl 246 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRL 246 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHH
Confidence 56889999999999999988876311 1111124566666555444555554443322110000 0000001122222
Q ss_pred hc------------CCe---EEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccHHH
Q 003037 200 IA------------RKK---FLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKMTV 245 (854)
Q Consensus 200 l~------------~k~---~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v 245 (854)
|. +.+ -++|+|.+.--+......+...++ +++|+|+---....
T Consensus 247 Lg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~---~~~rlIlvGD~~QL 304 (615)
T PRK10875 247 LGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALP---PHARVIFLGDRDQL 304 (615)
T ss_pred hCcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcc---cCCEEEEecchhhc
Confidence 21 111 289999984444444455555554 57888887654443
No 470
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=94.40 E-value=0.061 Score=52.26 Aligned_cols=43 Identities=30% Similarity=0.377 Sum_probs=32.7
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHh
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
-++++|.+..+..+.-.... ..-+.++|.+|+|||++|+.+..
T Consensus 2 f~dI~GQe~aKrAL~iAAaG--------~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG--------GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC--------C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhhcCcHHHHHHHHHHHcC--------CCCeEEECCCCCCHHHHHHHHHH
Confidence 35789998888888766652 34688999999999999999876
No 471
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=94.39 E-value=0.14 Score=58.28 Aligned_cols=133 Identities=13% Similarity=0.071 Sum_probs=72.6
Q ss_pred CccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccc-cccccCeeEEEEeCCccCHHHHHHHH
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNND-VINHFEKRIWVCVSDPFDEFRIAKAI 175 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~~s~~~~~~~~~~~i 175 (854)
..++|....++++.+.+..... ...-|.|.|..|+||+++|+.+++... ..+.| +-|++..-. +..+.
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~----~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pf---v~inC~~l~--e~lle-- 280 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYAR----SDATVLILGESGTGKELVAQAIHQLSGRRDFPF---VAINCGAIA--ESLLE-- 280 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCE---EEeccccCC--hhHHH--
Confidence 4589999999988888754432 234578999999999999999987421 11222 334443322 22222
Q ss_pred HHHhcCCCCCCccHHH--HHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCC-----------CCcEEEEeccc
Q 003037 176 IEALEGSTPSLGELNS--LLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGL-----------RGSKILVTTRK 242 (854)
Q Consensus 176 ~~~l~~~~~~~~~~~~--~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~ 242 (854)
..+.+.....-+... -..-+.+ ....=.|+||++..-.......+...+.... ...|||.||..
T Consensus 281 -seLFG~~~gaftga~~~~~~Gl~e--~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~ 357 (526)
T TIGR02329 281 -AELFGYEEGAFTGARRGGRTGLIE--AAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHC 357 (526)
T ss_pred -HHhcCCcccccccccccccccchh--hcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCC
Confidence 222221111000000 0000001 1123358999997666666667777765431 12378887754
Q ss_pred H
Q 003037 243 M 243 (854)
Q Consensus 243 ~ 243 (854)
.
T Consensus 358 ~ 358 (526)
T TIGR02329 358 A 358 (526)
T ss_pred C
Confidence 3
No 472
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=94.39 E-value=0.32 Score=49.08 Aligned_cols=48 Identities=27% Similarity=0.329 Sum_probs=33.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHH
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKA 174 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 174 (854)
...++.|.|.+|+|||++|.+++.. ....=..++|++... ++.++.+.
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~--~~~~g~~~~y~s~e~--~~~~l~~~ 62 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQ--GLKNGEKAMYISLEE--REERILGY 62 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC--CHHHHHHH
Confidence 5678999999999999999887763 212234677888766 34444433
No 473
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.39 E-value=0.51 Score=48.54 Aligned_cols=25 Identities=40% Similarity=0.538 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.-.+++|+|..|.|||||.+.++.-
T Consensus 25 ~Ge~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 25 EGQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999998873
No 474
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=94.39 E-value=0.7 Score=48.09 Aligned_cols=25 Identities=32% Similarity=0.336 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.-.+++|+|..|.|||||++.++.-
T Consensus 29 ~Ge~~~IvG~nGsGKSTLl~~L~gl 53 (275)
T cd03289 29 PGQRVGLLGRTGSGKSTLLSAFLRL 53 (275)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhh
Confidence 4458999999999999999999863
No 475
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.38 E-value=0.031 Score=53.87 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
....|.|+|++|+||||+|+.++..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999884
No 476
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=94.37 E-value=0.62 Score=48.03 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.-.+++|+|..|+|||||++.++..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 52 (254)
T PRK10418 28 RGRVLALVGGSGSGKSLTCAAALGI 52 (254)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4458999999999999999998863
No 477
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.35 E-value=0.065 Score=47.39 Aligned_cols=48 Identities=17% Similarity=0.252 Sum_probs=33.9
Q ss_pred CccccchhHHHHHHH----HhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 97 SEVRGRDEEKNTLKS----KLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~----~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
..++|..-..+.+.+ .+.... ..++-|++.+|.+|+|||.+|+.+++.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~---p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPN---PRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCC---CCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 346776655555544 444332 357889999999999999999887774
No 478
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=94.35 E-value=0.53 Score=48.34 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.-.+++|+|..|.|||||++.++..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 26 PGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 4468999999999999999999874
No 479
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.35 E-value=0.0072 Score=69.16 Aligned_cols=244 Identities=20% Similarity=0.268 Sum_probs=118.4
Q ss_pred hcCCCcccEEEecCCCCcccccccccc--ccccccccCCCceeeecCC-C-Ccccc----hhhhcCCCCcEEeecCcccc
Q 003037 504 FDQLTCLRTLKITGISGEKRYFRIIVE--IPKEIKKLIHLRFLKLVWL-D-IEELP----ETCCELFNVQTLEVLDCRSF 575 (854)
Q Consensus 504 ~~~l~~Lr~L~L~~~~~~~~~~~~i~~--lP~~i~~L~~L~~L~L~~~-~-i~~lP----~~i~~L~~L~~L~l~~~~~l 575 (854)
...+++|+.|.+.++.. +.. +-.....+.+|+.|+++++ . +...| .....+.+|+.|++++|..+
T Consensus 184 ~~~~~~L~~l~l~~~~~-------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~i 256 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSK-------ITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLV 256 (482)
T ss_pred HhhCchhhHhhhccccc-------CChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhcc
Confidence 34577888888877753 443 3344567778888888763 1 22111 23344577888888877632
Q ss_pred cccc-ccc-ccCCCCcccCceeecCCCCCCcccccccccCCceeEEecccCCCChhHHHHhhccCCCCCCcEEEEecCCC
Q 003037 576 RRLP-QGF-GKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQ 653 (854)
Q Consensus 576 ~~lp-~~i-~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 653 (854)
...- ..+ ..+++|++| .+.....+ ....+......+++|++|+++++..
T Consensus 257 sd~~l~~l~~~c~~L~~L--------------------------~l~~c~~l--t~~gl~~i~~~~~~L~~L~l~~c~~- 307 (482)
T KOG1947|consen 257 TDIGLSALASRCPNLETL--------------------------SLSNCSNL--TDEGLVSIAERCPSLRELDLSGCHG- 307 (482)
T ss_pred CchhHHHHHhhCCCcceE--------------------------ccCCCCcc--chhHHHHHHHhcCcccEEeeecCcc-
Confidence 2110 001 113344443 11111111 1133444556677888999988721
Q ss_pred CCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCchhhcccCccEEEEecccCCC--CCC--CCCCCCCCCEEEEcCC
Q 003037 654 RIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCD--TMP--PLGKLPSLEILEIRGN 729 (854)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~--~l~--~l~~L~~L~~L~L~~~ 729 (854)
.....+......+++|+.|.+ ..... +..++.+.+..+.... .+. ....+++|+.+.|..+
T Consensus 308 ----~~d~~l~~~~~~c~~l~~l~~-~~~~~----------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~ 372 (482)
T KOG1947|consen 308 ----LTDSGLEALLKNCPNLRELKL-LSLNG----------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYC 372 (482)
T ss_pred ----chHHHHHHHHHhCcchhhhhh-hhcCC----------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhh
Confidence 112222233344666776665 22111 4445555555443322 111 1455677777777665
Q ss_pred CCceEeCccccCCCCCCCCccccCCccccCCCccceeeccccccccccccCCCccccCCCccceeeecccccCcCCCc-C
Q 003037 730 WNVKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLKQVLFYNICHWEEWDFGKGDSITIMPQLKKLEFERCTELKSVPE-K 808 (854)
Q Consensus 730 ~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~ 808 (854)
. ....+.... ..++|.|. . .+..- ......|+.|.++.|.....--. .
T Consensus 373 ~-~~~~~~~~~----------------l~gc~~l~-~---------~l~~~----~~~~~~l~~L~l~~~~~~t~~~l~~ 421 (482)
T KOG1947|consen 373 G-ISDLGLELS----------------LRGCPNLT-E---------SLELR----LCRSDSLRVLNLSDCRLVTDKGLRC 421 (482)
T ss_pred h-ccCcchHHH----------------hcCCcccc-h---------HHHHH----hccCCccceEecccCccccccchHH
Confidence 4 322221000 12344441 1 11110 11233378888888864442110 0
Q ss_pred CC-CCCCcCEEEEecCcchHHh
Q 003037 809 LL-RSTTLEELSIVECPILVER 829 (854)
Q Consensus 809 l~-~l~~L~~L~l~~c~~l~~~ 829 (854)
.. ....++.+++.+|+.+...
T Consensus 422 ~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 422 LADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred HhhhhhccccCCccCcccccch
Confidence 01 1567788888888876543
No 480
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.33 E-value=0.092 Score=60.96 Aligned_cols=75 Identities=16% Similarity=0.175 Sum_probs=51.0
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhcccccc-ccCeeEEEEeCCccCHHHHHHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVIN-HFEKRIWVCVSDPFDEFRIAKA 174 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~f~~~~wv~~s~~~~~~~~~~~ 174 (854)
.++++|.++.++.+...+... +.+.++|++|+||||+|+.+.+. +.. .|...+++.-+ ..+...+++.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~--------~~~ll~G~pG~GKT~la~~la~~--l~~~~~~~~~~~~n~-~~~~~~~~~~ 85 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK--------RNVLLIGEPGVGKSMLAKAMAEL--LPDEELEDILVYPNP-EDPNMPRIVE 85 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC--------CCEEEECCCCCCHHHHHHHHHHH--cCchhheeEEEEeCC-CCCchHHHHH
Confidence 356899999988888877632 24669999999999999999984 322 33333333222 2355566777
Q ss_pred HHHHhcC
Q 003037 175 IIEALEG 181 (854)
Q Consensus 175 i~~~l~~ 181 (854)
++..++.
T Consensus 86 v~~~~g~ 92 (608)
T TIGR00764 86 VPAGEGR 92 (608)
T ss_pred HHHhhch
Confidence 7776654
No 481
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.33 E-value=0.26 Score=54.11 Aligned_cols=44 Identities=20% Similarity=0.285 Sum_probs=32.1
Q ss_pred chhHHHHHHHHhc--ccccccCCCeEEEEEEecCCCcHHHHHHHHHh
Q 003037 102 RDEEKNTLKSKLL--CESSEQQNAVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 102 r~~~~~~l~~~L~--~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
...-+.++..||. ..... .-+.+++.|.|++|+||||.++.++.
T Consensus 87 HkkKI~eVk~WL~~~~~~~~-~l~~~iLLltGPsGcGKSTtvkvLsk 132 (634)
T KOG1970|consen 87 HKKKISEVKQWLKQVAEFTP-KLGSRILLLTGPSGCGKSTTVKVLSK 132 (634)
T ss_pred hHHhHHHHHHHHHHHHHhcc-CCCceEEEEeCCCCCCchhHHHHHHH
Confidence 3455667777776 11110 23678999999999999999999887
No 482
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.31 E-value=0.42 Score=56.31 Aligned_cols=52 Identities=19% Similarity=0.192 Sum_probs=31.3
Q ss_pred HHHHHhcCCeEEEEEecCCC-cChhhHHHHHHhhcCCC-CCcEEEEecccHHHH
Q 003037 195 RIYASIARKKFLLVLDDVWT-EDYNKWETFQRCLKNGL-RGSKILVTTRKMTVA 246 (854)
Q Consensus 195 ~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~-~gs~ilvTtR~~~v~ 246 (854)
.+.+.+-.++-+|+||..-. -|.+.-..+.+.+.... ....|+||=|..-+.
T Consensus 619 alARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~ 672 (709)
T COG2274 619 ALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIR 672 (709)
T ss_pred HHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhh
Confidence 35566778999999999733 12233333555554433 345777777765544
No 483
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=94.31 E-value=0.46 Score=47.43 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.-.+++|+|..|+|||||++.++.-
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999873
No 484
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.30 E-value=0.81 Score=49.45 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhc
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
-|--.++|++|.|||+++.++++.
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~ 258 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANY 258 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhh
Confidence 355679999999999999999984
No 485
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=94.30 E-value=0.34 Score=51.07 Aligned_cols=60 Identities=15% Similarity=0.097 Sum_probs=41.5
Q ss_pred HHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCcc-CHHHHHHHHH
Q 003037 108 TLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPF-DEFRIAKAII 176 (854)
Q Consensus 108 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~ 176 (854)
++++.|..-. +-..++|.|..|+|||+|++++.+.. +-+.++++-+.+.. .+.+++.++-
T Consensus 146 rvID~l~Pi~-----kGqr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 146 RVLDTLFPVV-----KGGTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred hhhhcccccc-----CCCEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHHH
Confidence 5556665433 34578999999999999999999852 23578888887653 4455555543
No 486
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.29 E-value=0.22 Score=47.37 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=18.7
Q ss_pred EEEEecCCCcHHHHHHHHHhc
Q 003037 127 ISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 127 v~I~G~gGiGKTtLa~~v~~~ 147 (854)
|.|+|++|+||||+|+.+.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999874
No 487
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=94.26 E-value=0.78 Score=43.46 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHh
Q 003037 125 QVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 125 ~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
..+.|.|..|+|||||.+.++-
T Consensus 29 e~~~i~G~NG~GKTtLLRilaG 50 (209)
T COG4133 29 EALQITGPNGAGKTTLLRILAG 50 (209)
T ss_pred CEEEEECCCCCcHHHHHHHHHc
Confidence 4688999999999999999986
No 488
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.25 E-value=0.26 Score=52.25 Aligned_cols=25 Identities=36% Similarity=0.414 Sum_probs=22.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
...+++++|++|+||||++..++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 5789999999999999999888874
No 489
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.24 E-value=0.037 Score=53.30 Aligned_cols=24 Identities=46% Similarity=0.527 Sum_probs=22.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhc
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
..+|+|-||=|+||||||+.+.+.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 568999999999999999999984
No 490
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=94.24 E-value=0.64 Score=52.22 Aligned_cols=25 Identities=24% Similarity=0.565 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.-.+++|+|..|+|||||++.++..
T Consensus 49 ~GEivgIiGpNGSGKSTLLkiLaGL 73 (549)
T PRK13545 49 EGEIVGIIGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4468999999999999999999874
No 491
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.24 E-value=0.4 Score=48.64 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.-.+++|+|..|.|||||.+.++..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~g~ 49 (232)
T cd03300 25 EGEFFTLLGPSGCGKTTLLRLIAGF 49 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999874
No 492
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.24 E-value=0.03 Score=54.13 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHHhc
Q 003037 126 VISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999884
No 493
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=94.23 E-value=0.15 Score=57.96 Aligned_cols=47 Identities=17% Similarity=0.287 Sum_probs=37.8
Q ss_pred CccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
..++|....++++.+.+..... ...-|.|.|..|+||+++|+.+++.
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A~----s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYAR----SSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCCCHHHHHHHHHHh
Confidence 4599999999988888764332 2345789999999999999999874
No 494
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.21 E-value=0.24 Score=50.94 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHhc
Q 003037 126 VISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.|.++|.+|+||||+|+.+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999999874
No 495
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.20 E-value=0.03 Score=55.31 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHHhc
Q 003037 126 VISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
+|+|.|.+|+||||||+.+..-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998773
No 496
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=94.18 E-value=0.17 Score=49.95 Aligned_cols=105 Identities=15% Similarity=0.159 Sum_probs=52.5
Q ss_pred CCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCC---CCccHHHHHHHHH
Q 003037 121 QNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTP---SLGELNSLLERIY 197 (854)
Q Consensus 121 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~ 197 (854)
...+.++.|.|.+|+||||++..+... .. ....+.++...-.....-...+... ..... .......+...+.
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~--~~--~~~~v~i~~D~~r~~~p~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~ 86 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEE--FG--GGGIVVIDADEFRQFHPDYDELLKA-DPDEASELTQKEASRLAEKLI 86 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHH--T---TT-SEEE-GGGGGGGSTTHHHHHHH-HCCCTHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhh--cc--CCCeEEEehHHHHHhccchhhhhhh-hhhhhHHHHHHHHHHHHHHHH
Confidence 457899999999999999999988773 21 3455666543311111112222222 11111 0112334556666
Q ss_pred HHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCC
Q 003037 198 ASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGL 231 (854)
Q Consensus 198 ~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~ 231 (854)
+....+++=+|+|..-.. ......+...+...+
T Consensus 87 ~~a~~~~~nii~E~tl~~-~~~~~~~~~~~k~~G 119 (199)
T PF06414_consen 87 EYAIENRYNIIFEGTLSN-PSKLRKLIREAKAAG 119 (199)
T ss_dssp HHHHHCT--EEEE--TTS-SHHHHHHHHHHHCTT
T ss_pred HHHHHcCCCEEEecCCCC-hhHHHHHHHHHHcCC
Confidence 666677888888987543 244444666666533
No 497
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.18 E-value=0.035 Score=53.55 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=21.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHhc
Q 003037 125 QVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 125 ~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999874
No 498
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.17 E-value=0.037 Score=53.63 Aligned_cols=23 Identities=39% Similarity=0.619 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHhc
Q 003037 125 QVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 125 ~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.+++|+|+.|+||||||+.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998774
No 499
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=94.16 E-value=0.34 Score=55.01 Aligned_cols=135 Identities=14% Similarity=0.094 Sum_probs=71.9
Q ss_pred CccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHH
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAII 176 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 176 (854)
..++|......++...+..... ....+.|.|..|+||+++|+.+..... ......+-+++... ....+...+
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~----~~~~vli~Ge~GtGK~~~A~~ih~~~~--~~~~~~~~~~c~~~--~~~~~~~~l 205 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSR----SDITVLINGESGTGKELVARALHRHSP--RANGPFIALNMAAI--PKDLIESEL 205 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhC----cCCeEEEECCCCCCHHHHHHHHHHhCC--CCCCCeEEEeCCCC--CHHHHHHHh
Confidence 3588888777777776654332 334578999999999999999987422 11122233343332 223333322
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCC-----------CCcEEEEecccH
Q 003037 177 EALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGL-----------RGSKILVTTRKM 243 (854)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~~ 243 (854)
++........... ......-....-.|+||++..-.......+...+..+. .+.|||+||...
T Consensus 206 --fg~~~~~~~~~~~--~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~ 279 (463)
T TIGR01818 206 --FGHEKGAFTGANT--RRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQN 279 (463)
T ss_pred --cCCCCCCCCCccc--CCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCC
Confidence 2211100000000 00000001223458999997766666777777765432 245888888643
No 500
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.16 E-value=0.031 Score=54.40 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHHh
Q 003037 126 VISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~ 146 (854)
+|.|+|++|+||||+|+.++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999987
Done!