Query 003037
Match_columns 854
No_of_seqs 562 out of 3965
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 11:00:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003037.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003037hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.4E-49 4.8E-54 457.0 28.3 316 100-442 131-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 8.6E-40 2.9E-44 377.1 19.7 286 98-434 129-437 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1.1E-38 3.7E-43 407.0 22.5 315 91-440 118-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 7.8E-36 2.7E-40 348.5 23.6 309 92-437 119-449 (591)
5 3rgz_A Protein brassinosteroid 99.9 5.4E-25 1.8E-29 264.3 14.0 361 459-848 294-766 (768)
6 4fmz_A Internalin; leucine ric 99.9 2.9E-23 1E-27 225.4 18.7 302 458-824 43-344 (347)
7 4ecn_A Leucine-rich repeat pro 99.9 6E-23 2E-27 244.7 20.6 337 458-825 447-839 (876)
8 3rgz_A Protein brassinosteroid 99.9 2.4E-23 8.2E-28 250.0 14.1 338 458-824 268-691 (768)
9 4ecn_A Leucine-rich repeat pro 99.9 4.7E-23 1.6E-27 245.6 16.1 186 500-713 440-661 (876)
10 4eco_A Uncharacterized protein 99.9 2.8E-23 9.5E-28 243.6 13.8 315 458-825 248-599 (636)
11 3vq2_A TLR4, TOLL-like recepto 99.9 3.6E-22 1.2E-26 234.1 23.1 123 458-592 31-159 (606)
12 2z7x_B TOLL-like receptor 1, v 99.9 2.7E-22 9.2E-27 230.6 20.8 120 458-593 20-145 (520)
13 4eco_A Uncharacterized protein 99.9 4.2E-23 1.4E-27 242.1 13.5 302 473-825 239-578 (636)
14 2id5_A Lingo-1, leucine rich r 99.9 4.2E-22 1.4E-26 226.3 20.3 294 481-824 32-331 (477)
15 3t6q_A CD180 antigen; protein- 99.9 2.9E-22 1E-26 234.9 19.5 340 458-824 32-460 (606)
16 3vq2_A TLR4, TOLL-like recepto 99.9 2.8E-22 9.5E-27 235.1 19.0 119 458-588 55-179 (606)
17 3v47_A TOLL-like receptor 5B a 99.9 2.8E-22 9.5E-27 226.4 17.3 323 457-824 28-406 (455)
18 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6.6E-22 2.3E-26 229.3 19.8 342 458-824 51-508 (562)
19 3o6n_A APL1; leucine-rich repe 99.9 7.3E-22 2.5E-26 218.0 19.1 302 458-825 44-351 (390)
20 1o6v_A Internalin A; bacterial 99.9 1.4E-21 4.7E-26 221.0 21.1 324 458-824 45-386 (466)
21 4fcg_A Uncharacterized protein 99.9 9.8E-22 3.3E-26 210.7 18.1 231 481-823 81-311 (328)
22 3oja_B Anopheles plasmodium-re 99.9 1.3E-21 4.3E-26 228.2 18.8 302 458-825 50-357 (597)
23 4fmz_A Internalin; leucine ric 99.9 1.7E-21 5.7E-26 211.5 18.3 285 475-824 38-322 (347)
24 2z81_A CD282 antigen, TOLL-lik 99.9 4.1E-21 1.4E-25 222.4 21.9 336 458-824 25-508 (549)
25 1o6v_A Internalin A; bacterial 99.9 5.6E-21 1.9E-25 215.9 21.6 303 458-808 67-393 (466)
26 3bz5_A Internalin-J, INLJ; leu 99.9 5.2E-21 1.8E-25 214.5 20.6 306 458-824 41-350 (457)
27 2z63_A TOLL-like receptor 4, v 99.9 5.7E-21 1.9E-25 222.3 20.2 123 458-592 27-155 (570)
28 2z63_A TOLL-like receptor 4, v 99.9 2.9E-21 9.9E-26 224.8 17.1 342 458-824 51-529 (570)
29 3j0a_A TOLL-like receptor 5; m 99.9 1.3E-20 4.6E-25 228.5 23.5 323 457-824 22-392 (844)
30 3o6n_A APL1; leucine-rich repe 99.9 5.7E-21 2E-25 210.8 18.0 285 478-824 42-329 (390)
31 3t6q_A CD180 antigen; protein- 99.9 8.8E-21 3E-25 222.3 20.4 182 535-730 274-460 (606)
32 2id5_A Lingo-1, leucine rich r 99.9 1.6E-20 5.6E-25 213.1 21.5 295 458-801 31-332 (477)
33 3j0a_A TOLL-like receptor 5; m 99.8 1.8E-20 6.1E-25 227.4 22.6 101 481-591 24-128 (844)
34 3v47_A TOLL-like receptor 5B a 99.8 1.4E-20 4.6E-25 212.5 19.4 300 458-806 53-412 (455)
35 1ziw_A TOLL-like receptor 3; i 99.8 1.8E-20 6.1E-25 222.8 21.2 251 458-730 24-283 (680)
36 3bz5_A Internalin-J, INLJ; leu 99.8 1.2E-20 4.2E-25 211.4 17.9 286 474-826 35-320 (457)
37 3oja_B Anopheles plasmodium-re 99.8 1.3E-20 4.3E-25 219.8 17.5 286 478-825 48-336 (597)
38 2z81_A CD282 antigen, TOLL-lik 99.8 8.6E-21 3E-25 219.6 13.8 110 473-596 20-133 (549)
39 2ft3_A Biglycan; proteoglycan, 99.8 1.1E-20 3.7E-25 203.6 13.6 289 460-824 34-331 (332)
40 1xku_A Decorin; proteoglycan, 99.8 4.3E-20 1.5E-24 198.8 15.8 270 481-823 52-329 (330)
41 4g8a_A TOLL-like receptor 4; l 99.8 1.1E-19 3.6E-24 214.5 20.7 122 458-591 51-178 (635)
42 2z7x_B TOLL-like receptor 1, v 99.8 2.9E-19 9.8E-24 205.3 21.9 141 462-621 3-147 (520)
43 1ogq_A PGIP-2, polygalacturona 99.8 2E-20 6.7E-25 199.4 10.9 100 482-591 51-154 (313)
44 1ogq_A PGIP-2, polygalacturona 99.8 1.4E-20 4.8E-25 200.5 9.8 247 459-732 50-304 (313)
45 1ziw_A TOLL-like receptor 3; i 99.8 1.3E-19 4.4E-24 215.5 16.5 122 458-591 48-176 (680)
46 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 9.2E-19 3.1E-23 202.8 21.5 334 461-824 33-484 (562)
47 4fcg_A Uncharacterized protein 99.8 2.1E-19 7E-24 192.6 13.0 220 458-729 80-311 (328)
48 2ft3_A Biglycan; proteoglycan, 99.8 2.4E-18 8.2E-23 185.2 17.3 273 458-800 53-331 (332)
49 1xku_A Decorin; proteoglycan, 99.8 5E-18 1.7E-22 182.5 19.3 273 458-799 51-329 (330)
50 3g06_A SSPH2 (leucine-rich rep 99.8 4.3E-18 1.5E-22 196.4 19.5 255 460-825 41-296 (622)
51 2z80_A TOLL-like receptor 2, v 99.8 7.6E-19 2.6E-23 190.8 10.4 257 473-824 46-312 (353)
52 1jl5_A Outer protein YOPM; leu 99.8 9.2E-18 3.1E-22 187.9 17.8 302 458-825 90-408 (454)
53 2z66_A Variable lymphocyte rec 99.7 1.2E-17 4.1E-22 177.5 17.0 225 508-824 28-259 (306)
54 4g8a_A TOLL-like receptor 4; l 99.7 2.5E-17 8.7E-22 194.1 17.8 107 473-593 46-155 (635)
55 3zyi_A Leucine-rich repeat-con 99.7 8.2E-17 2.8E-21 181.0 20.9 87 481-579 75-163 (452)
56 1jl5_A Outer protein YOPM; leu 99.7 6.1E-18 2.1E-22 189.3 10.3 104 458-579 10-127 (454)
57 3zyj_A Leucine-rich repeat-con 99.7 7.7E-17 2.6E-21 180.5 18.1 241 483-824 45-290 (440)
58 3o53_A Protein LRIM1, AGAP0063 99.7 1.6E-18 5.6E-23 185.0 2.6 134 668-827 141-276 (317)
59 2z66_A Variable lymphocyte rec 99.7 2.8E-17 9.5E-22 174.7 11.9 200 481-730 28-234 (306)
60 3zyi_A Leucine-rich repeat-con 99.7 5.2E-17 1.8E-21 182.6 13.9 222 458-730 74-301 (452)
61 2qen_A Walker-type ATPase; unk 99.7 9.1E-16 3.1E-20 166.4 23.1 293 93-434 8-349 (350)
62 3o53_A Protein LRIM1, AGAP0063 99.7 1.6E-18 5.3E-23 185.2 0.7 271 479-830 32-303 (317)
63 1w5s_A Origin recognition comp 99.7 4.5E-16 1.6E-20 172.9 20.4 304 96-412 21-372 (412)
64 3zyj_A Leucine-rich repeat-con 99.7 9E-17 3.1E-21 180.0 14.4 223 481-730 64-290 (440)
65 3oja_A Leucine-rich immune mol 99.7 8E-17 2.7E-21 182.1 13.2 233 509-821 35-270 (487)
66 2z80_A TOLL-like receptor 2, v 99.7 1.3E-16 4.3E-21 173.3 13.9 251 458-730 51-312 (353)
67 3g06_A SSPH2 (leucine-rich rep 99.7 5.8E-16 2E-20 178.6 18.2 233 481-824 40-272 (622)
68 1ozn_A Reticulon 4 receptor; N 99.7 1.1E-15 3.7E-20 160.5 16.4 130 671-824 105-236 (285)
69 1wwl_A Monocyte differentiatio 99.6 4.6E-17 1.6E-21 173.3 4.5 62 668-730 198-264 (312)
70 2fna_A Conserved hypothetical 99.6 1.2E-14 4.1E-19 158.0 23.2 290 94-432 10-355 (357)
71 1ozn_A Reticulon 4 receptor; N 99.6 6.9E-16 2.4E-20 162.0 12.5 200 480-730 31-236 (285)
72 1z7x_W Ribonuclease inhibitor; 99.6 4.4E-18 1.5E-22 192.3 -6.3 333 459-825 28-410 (461)
73 1p9a_G Platelet glycoprotein I 99.6 8.7E-15 3E-19 153.5 18.6 65 504-579 6-71 (290)
74 1h6u_A Internalin H; cell adhe 99.6 1E-15 3.6E-20 162.2 10.5 198 477-737 37-234 (308)
75 2xwt_C Thyrotropin receptor; s 99.6 5.1E-15 1.7E-19 150.9 15.0 113 688-826 120-239 (239)
76 3ogk_B Coronatine-insensitive 99.6 4.3E-16 1.5E-20 182.0 6.8 341 460-824 139-524 (592)
77 1wwl_A Monocyte differentiatio 99.6 8.8E-16 3E-20 163.3 8.2 202 479-730 93-307 (312)
78 1z7x_W Ribonuclease inhibitor; 99.6 4.3E-17 1.5E-21 184.1 -4.2 331 458-824 2-381 (461)
79 2o6q_A Variable lymphocyte rec 99.6 5.9E-14 2E-18 145.9 19.5 153 509-736 17-173 (270)
80 3rfs_A Internalin B, repeat mo 99.6 6.7E-15 2.3E-19 153.2 11.8 114 671-814 133-247 (272)
81 3ogk_B Coronatine-insensitive 99.6 2.9E-16 9.8E-21 183.4 1.1 302 479-823 190-548 (592)
82 2z62_A TOLL-like receptor 4, v 99.6 1.2E-14 4.1E-19 151.7 13.0 75 508-591 28-105 (276)
83 2z62_A TOLL-like receptor 4, v 99.6 6.6E-15 2.3E-19 153.7 10.2 203 481-730 28-235 (276)
84 2o6q_A Variable lymphocyte rec 99.5 2.5E-14 8.7E-19 148.6 13.8 174 508-730 37-216 (270)
85 2ast_B S-phase kinase-associat 99.5 2.5E-15 8.5E-20 161.9 6.3 243 501-810 61-314 (336)
86 1p9a_G Platelet glycoprotein I 99.5 2.2E-14 7.7E-19 150.4 13.0 197 478-730 7-206 (290)
87 4ay9_X Follicle-stimulating ho 99.5 5.7E-14 1.9E-18 151.9 15.7 236 484-798 12-255 (350)
88 3oja_A Leucine-rich immune mol 99.5 1.2E-14 3.9E-19 164.4 9.9 214 481-730 34-248 (487)
89 1h6u_A Internalin H; cell adhe 99.5 3.4E-14 1.2E-18 150.5 11.8 192 458-710 40-231 (308)
90 2xwt_C Thyrotropin receptor; s 99.5 3.1E-14 1.1E-18 145.0 10.3 200 481-730 31-237 (239)
91 2p1m_B Transport inhibitor res 99.5 3.6E-15 1.2E-19 174.1 3.6 348 458-827 104-520 (594)
92 4ay9_X Follicle-stimulating ho 99.5 1.3E-13 4.6E-18 148.9 15.5 205 481-736 30-240 (350)
93 3rfs_A Internalin B, repeat mo 99.5 1.6E-14 5.5E-19 150.3 7.9 101 476-591 36-138 (272)
94 1fnn_A CDC6P, cell division co 99.5 4.6E-12 1.6E-16 139.3 27.4 299 96-413 16-353 (389)
95 2v1u_A Cell division control p 99.5 8.1E-12 2.8E-16 137.2 26.8 296 96-412 18-352 (387)
96 2ca6_A RAN GTPase-activating p 99.5 2.7E-15 9.3E-20 164.9 -1.3 93 474-573 25-133 (386)
97 2qby_B CDC6 homolog 3, cell di 99.5 4.9E-12 1.7E-16 138.7 24.8 296 96-413 19-341 (384)
98 2ca6_A RAN GTPase-activating p 99.5 5.2E-15 1.8E-19 162.6 0.3 233 458-730 31-314 (386)
99 4glp_A Monocyte differentiatio 99.5 9.7E-14 3.3E-18 147.4 10.0 202 479-730 89-305 (310)
100 4glp_A Monocyte differentiatio 99.5 1.8E-13 6.3E-18 145.2 12.0 102 480-591 63-174 (310)
101 2ast_B S-phase kinase-associat 99.4 4.4E-14 1.5E-18 152.1 5.0 223 461-729 49-282 (336)
102 1h6t_A Internalin B; cell adhe 99.4 1.5E-13 5.3E-18 144.1 7.6 98 477-591 42-139 (291)
103 3goz_A Leucine-rich repeat-con 99.4 6E-14 2E-18 152.6 4.0 70 496-573 10-91 (362)
104 2qby_A CDC6 homolog 1, cell di 99.4 1.4E-11 4.7E-16 135.3 22.4 296 95-412 18-349 (386)
105 1m9s_A Internalin B; cell inva 99.4 2.3E-13 7.9E-18 156.7 7.3 98 477-591 39-136 (605)
106 1h6t_A Internalin B; cell adhe 99.4 6.4E-13 2.2E-17 139.4 9.8 170 504-730 42-211 (291)
107 1njg_A DNA polymerase III subu 99.4 1.1E-11 3.9E-16 126.4 17.8 198 96-310 22-231 (250)
108 1m9s_A Internalin B; cell inva 99.4 7.2E-13 2.5E-17 152.7 8.5 75 505-591 40-114 (605)
109 2p1m_B Transport inhibitor res 99.3 6.9E-14 2.3E-18 163.3 -0.3 305 479-822 182-540 (594)
110 3m19_A Variable lymphocyte rec 99.3 3.5E-12 1.2E-16 130.8 12.5 62 667-730 127-190 (251)
111 3cvr_A Invasion plasmid antige 99.3 2.5E-12 8.5E-17 146.4 10.7 78 482-580 60-137 (571)
112 3cvr_A Invasion plasmid antige 99.3 1.3E-12 4.4E-17 148.8 8.1 106 459-591 59-165 (571)
113 4ezg_A Putative uncharacterize 99.3 3.3E-12 1.1E-16 125.6 10.1 151 505-730 41-192 (197)
114 3goz_A Leucine-rich repeat-con 99.3 2.1E-13 7.1E-18 148.3 1.4 71 512-591 2-85 (362)
115 3m19_A Variable lymphocyte rec 99.3 2.4E-11 8.3E-16 124.5 16.7 175 508-800 14-190 (251)
116 1dce_A Protein (RAB geranylger 99.3 5.3E-14 1.8E-18 161.1 -5.0 204 536-820 346-567 (567)
117 2chg_A Replication factor C sm 99.3 6.9E-11 2.3E-15 118.7 18.2 186 96-307 16-204 (226)
118 1xeu_A Internalin C; cellular 99.3 9.3E-13 3.2E-17 135.9 3.9 61 666-730 123-183 (263)
119 2o6s_A Variable lymphocyte rec 99.2 5E-11 1.7E-15 118.3 14.1 59 511-580 10-69 (208)
120 2o6s_A Variable lymphocyte rec 99.2 1E-11 3.4E-16 123.4 7.1 100 480-591 27-129 (208)
121 4ezg_A Putative uncharacterize 99.2 1.6E-10 5.5E-15 113.4 13.9 120 458-591 43-164 (197)
122 3e6j_A Variable lymphocyte rec 99.2 1.1E-10 3.8E-15 117.6 12.4 60 669-730 110-170 (229)
123 4b8c_D Glucose-repressible alc 99.2 4.9E-12 1.7E-16 149.6 1.9 124 458-591 172-298 (727)
124 2ell_A Acidic leucine-rich nuc 99.2 6.7E-11 2.3E-15 112.9 9.6 124 458-595 23-156 (168)
125 2je0_A Acidic leucine-rich nuc 99.2 3.6E-11 1.2E-15 112.2 7.2 121 458-592 16-146 (149)
126 3e6j_A Variable lymphocyte rec 99.2 9.5E-11 3.3E-15 118.1 10.7 121 459-591 40-164 (229)
127 2v9t_B SLIT homolog 2 protein 99.1 2.3E-10 8E-15 114.4 12.9 60 670-730 103-163 (220)
128 2v70_A SLIT-2, SLIT homolog 2 99.1 1.7E-10 6E-15 115.3 11.2 61 669-730 103-164 (220)
129 1xeu_A Internalin C; cellular 99.1 1.6E-10 5.4E-15 119.1 10.5 98 476-591 36-133 (263)
130 1sxj_B Activator 1 37 kDa subu 99.1 4.5E-10 1.5E-14 119.8 14.1 187 95-307 19-210 (323)
131 2v9t_B SLIT homolog 2 protein 99.1 2.1E-10 7.2E-15 114.7 10.3 121 459-591 32-157 (220)
132 1a9n_A U2A', U2A'; complex (nu 99.1 1.7E-10 5.7E-15 111.1 8.9 121 458-592 18-146 (176)
133 2xot_A Amphoterin-induced prot 99.1 7.4E-11 2.5E-15 127.9 6.4 93 484-591 21-117 (361)
134 1hqc_A RUVB; extended AAA-ATPa 99.1 1.5E-09 5E-14 115.8 16.0 268 96-410 11-324 (324)
135 2v70_A SLIT-2, SLIT homolog 2 99.1 2.6E-10 8.9E-15 114.0 9.5 122 458-591 31-158 (220)
136 2je0_A Acidic leucine-rich nuc 99.0 2.7E-10 9.3E-15 106.2 5.2 100 479-591 15-118 (149)
137 1iqp_A RFCS; clamp loader, ext 99.0 5E-09 1.7E-13 111.9 14.9 188 95-308 23-213 (327)
138 1dce_A Protein (RAB geranylger 99.0 1.1E-09 3.7E-14 125.4 10.1 118 460-591 442-565 (567)
139 3sb4_A Hypothetical leucine ri 99.0 6.4E-09 2.2E-13 111.0 15.3 223 538-820 100-328 (329)
140 2ell_A Acidic leucine-rich nuc 98.9 1.6E-09 5.4E-14 103.3 9.2 112 458-581 48-165 (168)
141 3te6_A Regulatory protein SIR3 98.9 1.2E-08 4.1E-13 106.1 16.1 208 97-310 20-283 (318)
142 1a9n_A U2A', U2A'; complex (nu 98.9 9.7E-10 3.3E-14 105.6 7.3 103 475-591 13-118 (176)
143 4b8c_D Glucose-repressible alc 98.9 7.4E-10 2.5E-14 130.9 7.7 103 459-573 224-327 (727)
144 2wfh_A SLIT homolog 2 protein 98.9 3.6E-09 1.2E-13 103.2 9.9 98 481-591 31-131 (193)
145 1w8a_A SLIT protein; signaling 98.9 2.5E-09 8.7E-14 104.3 8.8 115 463-591 12-131 (192)
146 2r9u_A Variable lymphocyte rec 98.9 2.7E-09 9.2E-14 102.1 8.0 106 464-583 17-125 (174)
147 2xot_A Amphoterin-induced prot 98.9 3.2E-09 1.1E-13 115.0 9.6 122 458-591 38-168 (361)
148 3sb4_A Hypothetical leucine ri 98.9 1.3E-09 4.4E-14 116.5 5.9 260 480-823 24-307 (329)
149 1jr3_A DNA polymerase III subu 98.9 3.6E-08 1.2E-12 107.3 16.9 196 96-307 15-221 (373)
150 2o6r_A Variable lymphocyte rec 98.8 7.6E-09 2.6E-13 99.4 10.0 100 480-591 27-129 (177)
151 2wfh_A SLIT homolog 2 protein 98.8 7.8E-09 2.7E-13 100.8 10.0 105 458-573 30-137 (193)
152 1ds9_A Outer arm dynein; leuci 98.8 5.3E-11 1.8E-15 117.0 -5.6 81 500-591 40-120 (198)
153 2chq_A Replication factor C sm 98.8 3.3E-08 1.1E-12 105.0 13.8 184 95-307 15-204 (319)
154 1w8a_A SLIT protein; signaling 98.8 1.3E-08 4.5E-13 99.1 9.1 105 458-573 28-137 (192)
155 3g39_A Variable lymphocyte rec 98.8 1.2E-08 4E-13 97.3 8.2 82 481-573 30-113 (170)
156 4fdw_A Leucine rich hypothetic 98.7 4E-07 1.4E-11 99.3 19.4 272 481-842 113-395 (401)
157 2r9u_A Variable lymphocyte rec 98.7 2E-08 6.9E-13 96.0 7.9 94 484-592 15-111 (174)
158 2o6r_A Variable lymphocyte rec 98.7 3.4E-08 1.2E-12 94.9 9.1 105 458-573 27-135 (177)
159 1jbk_A CLPB protein; beta barr 98.7 1.2E-07 4E-12 92.3 12.3 152 96-269 21-194 (195)
160 1ds9_A Outer arm dynein; leuci 98.7 8.4E-10 2.9E-14 108.4 -3.3 102 475-591 42-145 (198)
161 3g39_A Variable lymphocyte rec 98.6 3.6E-08 1.2E-12 93.8 7.6 95 483-592 11-108 (170)
162 3pfi_A Holliday junction ATP-d 98.6 1.4E-06 4.8E-11 93.1 20.8 180 95-307 27-227 (338)
163 3bos_A Putative DNA replicatio 98.6 1E-07 3.5E-12 96.5 9.8 175 96-307 27-217 (242)
164 1sxj_D Activator 1 41 kDa subu 98.6 6.1E-07 2.1E-11 96.7 16.1 196 95-306 35-234 (353)
165 4fdw_A Leucine rich hypothetic 98.5 1.4E-06 4.9E-11 95.0 17.6 239 476-799 131-380 (401)
166 1sxj_E Activator 1 40 kDa subu 98.5 7.6E-07 2.6E-11 95.9 12.5 197 96-307 13-237 (354)
167 3pvs_A Replication-associated 98.4 2.7E-06 9.2E-11 93.7 16.7 180 95-306 24-214 (447)
168 2z4s_A Chromosomal replication 98.4 3.3E-06 1.1E-10 93.1 16.5 181 124-325 130-331 (440)
169 3h4m_A Proteasome-activating n 98.4 5.2E-06 1.8E-10 86.3 16.8 186 95-306 15-230 (285)
170 1a5t_A Delta prime, HOLB; zinc 98.4 5E-06 1.7E-10 88.3 16.8 171 103-307 8-205 (334)
171 2qz4_A Paraplegin; AAA+, SPG7, 98.4 1.1E-05 3.9E-10 82.5 18.8 189 95-306 4-221 (262)
172 3uk6_A RUVB-like 2; hexameric 98.4 6.6E-06 2.3E-10 89.0 17.7 199 96-306 43-302 (368)
173 3u61_B DNA polymerase accessor 98.4 4.8E-06 1.6E-10 88.3 16.1 180 95-304 24-213 (324)
174 2ifg_A High affinity nerve gro 98.3 6E-07 2E-11 96.5 8.1 89 473-573 24-114 (347)
175 2ifg_A High affinity nerve gro 98.3 7.5E-07 2.6E-11 95.7 8.3 94 485-592 12-109 (347)
176 3syl_A Protein CBBX; photosynt 98.3 6.7E-06 2.3E-10 86.6 15.3 161 98-274 32-218 (309)
177 1sxj_A Activator 1 95 kDa subu 98.3 3.2E-06 1.1E-10 95.6 13.2 199 95-307 37-253 (516)
178 1d2n_A N-ethylmaleimide-sensit 98.3 1.9E-05 6.3E-10 81.4 16.8 171 97-298 33-228 (272)
179 1sxj_C Activator 1 40 kDa subu 98.2 1.5E-05 5E-10 85.1 16.2 177 96-304 24-209 (340)
180 1l8q_A Chromosomal replication 98.2 7.8E-06 2.7E-10 86.7 13.6 178 97-302 11-203 (324)
181 3n70_A Transport activator; si 98.2 1.7E-06 5.8E-11 79.6 7.3 114 98-242 2-115 (145)
182 2p65_A Hypothetical protein PF 98.2 2.2E-06 7.6E-11 82.6 8.4 46 96-147 21-66 (187)
183 2ra8_A Uncharacterized protein 98.2 1.6E-07 5.3E-12 100.7 -0.5 144 666-824 167-318 (362)
184 3d8b_A Fidgetin-like protein 1 98.1 4.1E-05 1.4E-09 82.1 16.6 188 95-307 82-295 (357)
185 3eie_A Vacuolar protein sortin 98.1 4.3E-05 1.5E-09 80.7 16.2 188 95-307 16-228 (322)
186 1xwi_A SKD1 protein; VPS4B, AA 98.1 0.00018 6.3E-09 75.7 20.4 189 95-307 10-223 (322)
187 3b9p_A CG5977-PA, isoform A; A 98.1 0.00026 8.8E-09 73.8 21.0 185 95-306 19-232 (297)
188 2qp9_X Vacuolar protein sortin 98.1 0.00011 3.9E-09 78.5 18.4 188 95-307 49-261 (355)
189 2gno_A DNA polymerase III, gam 98.1 2.8E-05 9.7E-10 80.8 13.2 149 101-273 1-152 (305)
190 3ec2_A DNA replication protein 98.0 1.2E-05 4.1E-10 77.0 8.8 121 102-242 19-142 (180)
191 1in4_A RUVB, holliday junction 98.0 0.00057 1.9E-08 72.4 22.6 178 96-306 24-222 (334)
192 4fs7_A Uncharacterized protein 98.0 6E-05 2.1E-09 82.2 14.9 284 476-822 66-375 (394)
193 3vfd_A Spastin; ATPase, microt 98.0 0.0003 1E-08 76.4 19.6 190 93-306 111-325 (389)
194 3cf0_A Transitional endoplasmi 98.0 0.00029 9.8E-09 73.5 18.6 182 96-302 14-223 (301)
195 3co5_A Putative two-component 97.9 9.1E-06 3.1E-10 74.5 5.9 111 97-242 4-115 (143)
196 2ra8_A Uncharacterized protein 97.9 8.7E-06 3E-10 87.0 6.5 60 670-730 251-318 (362)
197 2zan_A Vacuolar protein sortin 97.9 0.00026 9E-09 78.0 18.6 191 94-307 131-345 (444)
198 2w58_A DNAI, primosome compone 97.9 1.3E-05 4.4E-10 78.5 6.8 126 97-242 25-158 (202)
199 3un9_A NLR family member X1; l 97.9 1.6E-06 5.6E-11 93.5 0.1 58 508-573 101-166 (372)
200 1qvr_A CLPB protein; coiled co 97.9 6.9E-05 2.3E-09 90.1 14.2 155 96-272 169-344 (854)
201 4fcw_A Chaperone protein CLPB; 97.8 7.2E-05 2.5E-09 78.6 11.9 137 97-242 17-169 (311)
202 3hu3_A Transitional endoplasmi 97.8 0.00017 5.9E-09 80.1 14.3 185 97-306 204-414 (489)
203 2bjv_A PSP operon transcriptio 97.8 6E-05 2.1E-09 77.2 10.0 158 97-269 6-190 (265)
204 1ojl_A Transcriptional regulat 97.7 0.00011 3.7E-09 76.7 10.3 159 97-270 2-187 (304)
205 2c9o_A RUVB-like 1; hexameric 97.7 0.00021 7.2E-09 79.3 13.3 97 205-306 297-409 (456)
206 3pxg_A Negative regulator of g 97.7 0.00022 7.4E-09 79.3 13.0 145 97-273 180-338 (468)
207 1lv7_A FTSH; alpha/beta domain 97.7 0.00086 2.9E-08 68.1 16.3 186 95-305 10-223 (257)
208 3rw6_A Nuclear RNA export fact 97.6 1.2E-05 4E-10 81.5 1.8 81 504-593 166-258 (267)
209 2kjq_A DNAA-related protein; s 97.6 5.7E-05 1.9E-09 69.5 6.2 87 124-242 36-124 (149)
210 1ofh_A ATP-dependent HSL prote 97.6 0.00037 1.3E-08 73.1 13.4 153 97-271 15-213 (310)
211 4b4t_K 26S protease regulatory 97.6 0.00055 1.9E-08 74.0 14.5 179 96-300 171-379 (428)
212 3e4g_A ATP synthase subunit S, 97.6 1.8E-05 6.3E-10 74.1 2.5 40 789-828 114-154 (176)
213 1r6b_X CLPA protein; AAA+, N-t 97.6 0.00064 2.2E-08 80.8 15.9 157 96-273 185-362 (758)
214 4b4t_J 26S protease regulatory 97.6 0.0013 4.5E-08 69.9 16.4 178 97-300 148-354 (405)
215 3un9_A NLR family member X1; l 97.6 2.3E-05 8E-10 84.4 2.9 126 459-591 101-244 (372)
216 4b4t_L 26S protease subunit RP 97.6 0.0009 3.1E-08 72.4 15.1 179 96-300 180-387 (437)
217 3pxi_A Negative regulator of g 97.5 0.00012 4E-09 87.0 8.8 156 97-273 491-675 (758)
218 4b4t_M 26S protease regulatory 97.5 0.00074 2.5E-08 73.0 13.0 179 96-300 180-387 (434)
219 4gt6_A Cell surface protein; l 97.5 0.0054 1.9E-07 66.6 20.2 298 477-824 59-368 (394)
220 2ce7_A Cell division protein F 97.4 0.0017 5.7E-08 71.5 15.2 180 96-300 15-221 (476)
221 4b4t_I 26S protease regulatory 97.4 0.0017 5.8E-08 69.3 14.1 178 97-300 182-388 (437)
222 3pxi_A Negative regulator of g 97.4 0.00063 2.2E-08 80.8 12.0 149 97-273 180-338 (758)
223 4b4t_H 26S protease regulatory 97.4 0.0016 5.4E-08 70.3 13.7 178 97-300 209-415 (467)
224 3rw6_A Nuclear RNA export fact 97.3 0.00025 8.5E-09 71.7 6.1 82 479-570 168-259 (267)
225 1io0_A Tropomodulin; LRR prote 97.2 0.00014 4.9E-09 69.7 3.5 71 500-573 28-104 (185)
226 3t15_A Ribulose bisphosphate c 97.2 0.0021 7.2E-08 66.5 12.5 26 122-147 34-59 (293)
227 3e4g_A ATP synthase subunit S, 97.2 0.00048 1.6E-08 64.4 6.7 88 479-577 59-154 (176)
228 2r44_A Uncharacterized protein 97.2 0.00058 2E-08 72.3 8.3 151 97-274 27-199 (331)
229 2cvh_A DNA repair and recombin 97.2 0.0019 6.4E-08 63.7 10.9 86 123-214 19-116 (220)
230 1r6b_X CLPA protein; AAA+, N-t 97.1 0.0012 4E-08 78.6 10.9 134 97-241 458-606 (758)
231 2qgz_A Helicase loader, putati 97.1 0.00037 1.3E-08 72.7 4.9 56 103-162 134-189 (308)
232 1io0_A Tropomodulin; LRR prote 97.1 0.00034 1.2E-08 67.0 4.2 111 477-591 32-156 (185)
233 1qvr_A CLPB protein; coiled co 97.0 0.0021 7E-08 77.3 11.5 135 98-242 559-710 (854)
234 2vhj_A Ntpase P4, P4; non- hyd 97.0 0.00046 1.6E-08 70.8 4.7 69 123-213 122-192 (331)
235 3m6a_A ATP-dependent protease 97.0 0.0011 3.9E-08 74.8 8.3 165 97-273 81-266 (543)
236 4h09_A Hypothetical leucine ri 97.0 0.011 3.7E-07 63.7 15.8 34 479-516 44-77 (379)
237 3nbx_X ATPase RAVA; AAA+ ATPas 97.0 0.0046 1.6E-07 68.6 12.7 43 97-147 22-64 (500)
238 4fs7_A Uncharacterized protein 96.9 0.0096 3.3E-07 64.6 15.0 233 533-818 156-393 (394)
239 2r62_A Cell division protease 96.9 0.00018 6.1E-09 73.7 0.9 52 96-147 10-67 (268)
240 2x8a_A Nuclear valosin-contain 96.8 0.019 6.5E-07 58.5 15.3 156 96-273 9-191 (274)
241 3cf2_A TER ATPase, transitiona 96.8 0.0087 3E-07 69.8 13.6 179 96-300 203-407 (806)
242 4h09_A Hypothetical leucine ri 96.8 0.032 1.1E-06 60.0 17.4 97 459-570 46-143 (379)
243 1um8_A ATP-dependent CLP prote 96.7 0.018 6.3E-07 61.8 15.1 51 97-147 21-95 (376)
244 1jr3_D DNA polymerase III, del 96.7 0.027 9.2E-07 59.7 16.0 158 123-306 17-184 (343)
245 1ixz_A ATP-dependent metallopr 96.7 0.014 4.9E-07 58.8 13.0 180 95-300 14-221 (254)
246 4gt6_A Cell surface protein; l 96.7 0.011 3.6E-07 64.2 12.6 305 461-821 66-386 (394)
247 2dhr_A FTSH; AAA+ protein, hex 96.6 0.026 8.8E-07 62.4 15.5 178 94-300 28-236 (499)
248 1ypw_A Transitional endoplasmi 96.6 0.0049 1.7E-07 73.1 10.3 158 95-273 202-385 (806)
249 1g8p_A Magnesium-chelatase 38 96.6 0.0043 1.5E-07 66.1 9.0 46 96-147 23-68 (350)
250 3hr8_A Protein RECA; alpha and 96.4 0.0081 2.8E-07 63.3 9.2 84 123-213 60-149 (356)
251 2b8t_A Thymidine kinase; deoxy 96.4 0.0029 9.9E-08 61.9 5.4 113 123-243 11-126 (223)
252 2w0m_A SSO2452; RECA, SSPF, un 96.4 0.011 3.6E-07 58.7 9.7 115 124-243 23-168 (235)
253 1iy2_A ATP-dependent metallopr 96.4 0.01 3.5E-07 60.9 9.7 181 94-300 37-245 (278)
254 1n0w_A DNA repair protein RAD5 96.4 0.01 3.6E-07 59.2 9.4 90 123-213 23-129 (243)
255 1v5w_A DMC1, meiotic recombina 96.3 0.017 5.9E-07 61.0 11.3 58 122-180 120-181 (343)
256 2i1q_A DNA repair and recombin 96.2 0.012 4E-07 61.8 9.2 89 123-212 97-213 (322)
257 2z43_A DNA repair and recombin 96.1 0.017 5.9E-07 60.5 9.9 58 123-181 106-167 (324)
258 1g5t_A COB(I)alamin adenosyltr 96.1 0.0053 1.8E-07 58.2 5.2 116 124-243 28-163 (196)
259 3io5_A Recombination and repai 96.1 0.015 5.2E-07 59.3 8.8 84 126-214 30-122 (333)
260 1ye8_A Protein THEP1, hypothet 96.1 0.032 1.1E-06 52.6 10.6 22 126-147 2-23 (178)
261 3lw7_A Adenylate kinase relate 96.0 0.073 2.5E-06 49.8 13.1 20 125-144 2-21 (179)
262 2pze_A Cystic fibrosis transme 96.0 0.11 3.6E-06 51.3 14.3 53 195-247 140-194 (229)
263 2cbz_A Multidrug resistance-as 95.9 0.061 2.1E-06 53.3 12.2 25 123-147 30-54 (237)
264 1rz3_A Hypothetical protein rb 95.9 0.0083 2.8E-07 58.1 5.7 43 101-146 2-44 (201)
265 1xp8_A RECA protein, recombina 95.9 0.023 8E-07 60.2 9.5 84 123-213 73-162 (366)
266 3tqc_A Pantothenate kinase; bi 95.8 0.023 7.7E-07 59.0 8.9 103 99-203 69-171 (321)
267 4a74_A DNA repair and recombin 95.8 0.044 1.5E-06 54.0 10.7 46 123-168 24-73 (231)
268 1u94_A RECA protein, recombina 95.8 0.02 6.9E-07 60.5 8.4 83 123-212 62-150 (356)
269 1cr0_A DNA primase/helicase; R 95.7 0.039 1.3E-06 57.0 10.5 39 123-163 34-73 (296)
270 2zr9_A Protein RECA, recombina 95.7 0.027 9.3E-07 59.4 9.3 84 123-213 60-149 (349)
271 1pzn_A RAD51, DNA repair and r 95.7 0.042 1.5E-06 58.0 10.8 91 123-214 130-242 (349)
272 2px0_A Flagellar biosynthesis 95.5 0.026 9.1E-07 58.0 8.0 87 123-212 104-191 (296)
273 2ff7_A Alpha-hemolysin translo 95.4 0.065 2.2E-06 53.5 10.5 23 124-146 35-57 (247)
274 4akg_A Glutathione S-transfera 95.4 0.26 9.1E-06 65.1 18.4 138 125-273 1268-1431(2695)
275 3bh0_A DNAB-like replicative h 95.4 0.13 4.5E-06 53.4 12.9 53 123-179 67-119 (315)
276 2orw_A Thymidine kinase; TMTK, 95.2 0.003 1E-07 60.1 -0.2 23 125-147 4-26 (184)
277 1odf_A YGR205W, hypothetical 3 95.2 0.079 2.7E-06 54.2 10.4 81 122-202 29-117 (290)
278 3c8u_A Fructokinase; YP_612366 95.2 0.016 5.5E-07 56.4 5.0 39 105-147 7-45 (208)
279 4a1f_A DNAB helicase, replicat 95.2 0.055 1.9E-06 56.5 9.2 54 123-180 45-98 (338)
280 2pjz_A Hypothetical protein ST 95.1 0.16 5.6E-06 51.0 12.2 23 124-146 30-52 (263)
281 3lda_A DNA repair protein RAD5 95.1 0.071 2.4E-06 57.2 10.0 57 123-180 177-237 (400)
282 1vma_A Cell division protein F 95.0 0.068 2.3E-06 55.1 9.4 108 103-213 81-196 (306)
283 2bbs_A Cystic fibrosis transme 94.9 0.28 9.5E-06 50.1 13.5 53 195-247 169-223 (290)
284 1qhx_A CPT, protein (chloramph 94.9 0.013 4.5E-07 55.2 3.3 23 125-147 4-26 (178)
285 1gvn_B Zeta; postsegregational 94.8 0.028 9.5E-07 57.7 5.7 26 121-146 30-55 (287)
286 3hws_A ATP-dependent CLP prote 94.8 0.02 6.8E-07 61.2 4.8 50 98-147 16-74 (363)
287 1zp6_A Hypothetical protein AT 94.8 0.017 5.7E-07 55.3 3.7 25 123-147 8-32 (191)
288 1ly1_A Polynucleotide kinase; 94.7 0.016 5.6E-07 54.7 3.5 22 125-146 3-24 (181)
289 3upu_A ATP-dependent DNA helic 94.7 0.04 1.4E-06 60.9 6.8 107 126-244 47-166 (459)
290 2nq2_C Hypothetical ABC transp 94.7 0.15 5.3E-06 50.9 10.6 24 124-147 31-54 (253)
291 3ice_A Transcription terminati 94.6 0.039 1.3E-06 57.9 6.1 53 108-166 163-216 (422)
292 3tui_C Methionine import ATP-b 94.6 0.24 8.3E-06 52.0 12.3 54 195-248 173-229 (366)
293 3kb2_A SPBC2 prophage-derived 94.6 0.017 5.8E-07 54.1 3.2 21 126-146 3-23 (173)
294 3uie_A Adenylyl-sulfate kinase 94.6 0.021 7E-07 55.2 3.9 25 123-147 24-48 (200)
295 2ffh_A Protein (FFH); SRP54, s 94.6 0.13 4.5E-06 55.4 10.5 25 123-147 97-121 (425)
296 3vaa_A Shikimate kinase, SK; s 94.6 0.016 5.5E-07 55.9 3.1 23 124-146 25-47 (199)
297 2ga8_A Hypothetical 39.9 kDa p 94.6 0.033 1.1E-06 58.0 5.4 46 100-147 2-47 (359)
298 3nh6_A ATP-binding cassette SU 94.5 0.098 3.3E-06 53.8 9.0 24 123-146 79-102 (306)
299 1j8m_F SRP54, signal recogniti 94.5 0.21 7.1E-06 51.3 11.3 87 124-212 98-189 (297)
300 3rfe_A Platelet glycoprotein I 94.4 0.054 1.8E-06 48.0 5.9 52 512-573 12-66 (130)
301 3e70_C DPA, signal recognition 94.4 0.23 7.9E-06 51.7 11.6 26 122-147 127-152 (328)
302 2rhm_A Putative kinase; P-loop 94.4 0.024 8.2E-07 54.2 3.8 25 123-147 4-28 (193)
303 2p5t_B PEZT; postsegregational 94.4 0.032 1.1E-06 56.2 4.8 41 106-147 15-55 (253)
304 3trf_A Shikimate kinase, SK; a 94.3 0.019 6.6E-07 54.5 2.9 23 124-146 5-27 (185)
305 1kgd_A CASK, peripheral plasma 94.3 0.02 6.8E-07 54.2 2.9 24 124-147 5-28 (180)
306 1kag_A SKI, shikimate kinase I 94.3 0.018 6.3E-07 53.9 2.7 22 125-146 5-26 (173)
307 2xxa_A Signal recognition part 94.3 0.16 5.3E-06 55.2 10.2 43 105-147 78-123 (433)
308 1sky_E F1-ATPase, F1-ATP synth 94.2 0.097 3.3E-06 56.7 8.4 50 126-176 153-203 (473)
309 3dm5_A SRP54, signal recogniti 94.2 0.34 1.2E-05 52.2 12.7 25 123-147 99-123 (443)
310 1knq_A Gluconate kinase; ALFA/ 94.2 0.03 1E-06 52.6 3.9 24 123-146 7-30 (175)
311 3fwy_A Light-independent proto 94.2 0.026 8.8E-07 58.6 3.6 40 122-163 46-85 (314)
312 2yvu_A Probable adenylyl-sulfa 94.1 0.032 1.1E-06 53.1 4.0 26 122-147 11-36 (186)
313 1ls1_A Signal recognition part 94.1 0.19 6.6E-06 51.5 10.2 87 123-212 97-189 (295)
314 2dr3_A UPF0273 protein PH0284; 94.1 0.15 5.2E-06 50.6 9.3 40 123-164 22-61 (247)
315 1nks_A Adenylate kinase; therm 94.1 0.028 9.6E-07 53.7 3.6 23 125-147 2-24 (194)
316 2ck3_D ATP synthase subunit be 94.1 0.29 9.8E-06 52.9 11.5 65 108-178 142-207 (482)
317 1z47_A CYSA, putative ABC-tran 94.0 0.35 1.2E-05 50.8 12.0 23 124-146 41-63 (355)
318 4eun_A Thermoresistant glucoki 94.0 0.025 8.5E-07 54.6 3.1 24 123-146 28-51 (200)
319 1uf9_A TT1252 protein; P-loop, 94.0 0.033 1.1E-06 53.8 3.9 25 122-146 6-30 (203)
320 3kl4_A SRP54, signal recogniti 94.0 0.2 7E-06 54.0 10.4 89 123-213 96-189 (433)
321 1q57_A DNA primase/helicase; d 94.0 0.16 5.6E-06 56.7 10.0 54 123-179 241-294 (503)
322 3iij_A Coilin-interacting nucl 93.9 0.024 8.1E-07 53.6 2.6 25 123-147 10-34 (180)
323 4gp7_A Metallophosphoesterase; 93.9 0.026 9E-07 52.8 2.8 24 123-146 8-31 (171)
324 3tau_A Guanylate kinase, GMP k 93.9 0.029 9.8E-07 54.5 3.2 25 123-147 7-31 (208)
325 2bdt_A BH3686; alpha-beta prot 93.9 0.032 1.1E-06 53.2 3.5 22 125-146 3-24 (189)
326 2qt1_A Nicotinamide riboside k 93.9 0.036 1.2E-06 53.7 3.9 24 123-146 20-43 (207)
327 3cf2_A TER ATPase, transitiona 93.9 0.35 1.2E-05 56.4 12.7 99 94-213 474-580 (806)
328 3l0o_A Transcription terminati 93.9 0.21 7.2E-06 52.3 9.7 36 107-147 163-198 (427)
329 3t61_A Gluconokinase; PSI-biol 93.9 0.025 8.5E-07 54.7 2.7 24 124-147 18-41 (202)
330 3asz_A Uridine kinase; cytidin 93.8 0.035 1.2E-06 54.0 3.7 24 123-146 5-28 (211)
331 2yhs_A FTSY, cell division pro 93.8 0.34 1.2E-05 52.9 11.7 43 122-167 291-333 (503)
332 1y63_A LMAJ004144AAA protein; 93.8 0.03 1E-06 53.1 3.2 24 123-146 9-32 (184)
333 1kht_A Adenylate kinase; phosp 93.8 0.031 1.1E-06 53.3 3.3 23 125-147 4-26 (192)
334 1tev_A UMP-CMP kinase; ploop, 93.8 0.034 1.2E-06 53.2 3.5 23 124-146 3-25 (196)
335 2ze6_A Isopentenyl transferase 93.8 0.033 1.1E-06 56.0 3.5 23 125-147 2-24 (253)
336 3tr0_A Guanylate kinase, GMP k 93.7 0.032 1.1E-06 54.0 3.2 23 124-146 7-29 (205)
337 1ukz_A Uridylate kinase; trans 93.7 0.04 1.4E-06 53.2 3.9 25 122-146 13-37 (203)
338 3umf_A Adenylate kinase; rossm 93.7 0.04 1.4E-06 53.6 3.8 26 122-147 27-52 (217)
339 2c95_A Adenylate kinase 1; tra 93.7 0.033 1.1E-06 53.3 3.2 24 123-146 8-31 (196)
340 2qor_A Guanylate kinase; phosp 93.7 0.028 9.5E-07 54.4 2.6 25 123-147 11-35 (204)
341 1zuh_A Shikimate kinase; alpha 93.6 0.035 1.2E-06 51.7 3.2 24 123-146 6-29 (168)
342 2hf9_A Probable hydrogenase ni 93.6 0.056 1.9E-06 53.1 4.9 25 123-147 37-61 (226)
343 2j41_A Guanylate kinase; GMP, 93.6 0.034 1.2E-06 53.8 3.2 24 124-147 6-29 (207)
344 1via_A Shikimate kinase; struc 93.6 0.03 1E-06 52.6 2.7 21 126-146 6-26 (175)
345 3cm0_A Adenylate kinase; ATP-b 93.6 0.043 1.5E-06 52.1 3.8 23 124-146 4-26 (186)
346 3a4m_A L-seryl-tRNA(SEC) kinas 93.6 0.039 1.3E-06 55.7 3.6 25 123-147 3-27 (260)
347 2if2_A Dephospho-COA kinase; a 93.6 0.038 1.3E-06 53.4 3.4 21 126-146 3-23 (204)
348 1uj2_A Uridine-cytidine kinase 93.5 0.04 1.4E-06 55.4 3.6 25 122-146 20-44 (252)
349 2jaq_A Deoxyguanosine kinase; 93.5 0.037 1.3E-06 53.4 3.3 22 126-147 2-23 (205)
350 3a00_A Guanylate kinase, GMP k 93.5 0.028 9.5E-07 53.5 2.3 23 125-147 2-24 (186)
351 3jvv_A Twitching mobility prot 93.4 0.042 1.5E-06 58.0 3.8 110 124-246 123-234 (356)
352 1jjv_A Dephospho-COA kinase; P 93.4 0.043 1.5E-06 53.1 3.6 22 125-146 3-24 (206)
353 1cke_A CK, MSSA, protein (cyti 93.4 0.039 1.3E-06 54.3 3.3 22 125-146 6-27 (227)
354 2q6t_A DNAB replication FORK h 93.4 0.28 9.6E-06 53.7 10.5 54 123-179 199-252 (444)
355 3gd7_A Fusion complex of cysti 93.4 0.34 1.2E-05 51.6 10.7 24 123-146 46-69 (390)
356 1zu4_A FTSY; GTPase, signal re 93.4 0.22 7.5E-06 51.7 9.0 26 122-147 103-128 (320)
357 1fx0_B ATP synthase beta chain 93.3 0.22 7.5E-06 54.1 9.1 64 108-177 154-218 (498)
358 3tlx_A Adenylate kinase 2; str 93.3 0.065 2.2E-06 53.4 4.8 24 123-146 28-51 (243)
359 2iyv_A Shikimate kinase, SK; t 93.3 0.033 1.1E-06 52.8 2.5 21 126-146 4-24 (184)
360 1ex7_A Guanylate kinase; subst 93.3 0.028 9.7E-07 53.2 2.0 22 125-146 2-23 (186)
361 2plr_A DTMP kinase, probable t 93.3 0.046 1.6E-06 53.1 3.6 24 124-147 4-27 (213)
362 3ney_A 55 kDa erythrocyte memb 93.3 0.046 1.6E-06 52.2 3.3 25 123-147 18-42 (197)
363 3bgw_A DNAB-like replicative h 93.3 0.41 1.4E-05 52.2 11.4 53 123-179 196-248 (444)
364 1qf9_A UMP/CMP kinase, protein 93.3 0.049 1.7E-06 52.0 3.6 24 123-146 5-28 (194)
365 3e1s_A Exodeoxyribonuclease V, 93.3 0.2 6.7E-06 56.7 9.1 105 124-241 204-314 (574)
366 2cdn_A Adenylate kinase; phosp 93.3 0.045 1.5E-06 52.8 3.3 24 123-146 19-42 (201)
367 2grj_A Dephospho-COA kinase; T 93.2 0.056 1.9E-06 51.6 3.8 24 123-146 11-34 (192)
368 2vli_A Antibiotic resistance p 93.2 0.03 1E-06 53.0 2.0 24 124-147 5-28 (183)
369 2bwj_A Adenylate kinase 5; pho 93.2 0.047 1.6E-06 52.4 3.4 23 124-146 12-34 (199)
370 2pt5_A Shikimate kinase, SK; a 93.2 0.047 1.6E-06 50.8 3.2 21 126-146 2-22 (168)
371 1lvg_A Guanylate kinase, GMP k 93.2 0.035 1.2E-06 53.5 2.4 23 124-146 4-26 (198)
372 1xjc_A MOBB protein homolog; s 93.1 0.045 1.6E-06 50.7 2.9 25 123-147 3-27 (169)
373 1e6c_A Shikimate kinase; phosp 93.1 0.04 1.4E-06 51.5 2.6 21 126-146 4-24 (173)
374 1htw_A HI0065; nucleotide-bind 93.1 0.06 2.1E-06 49.5 3.7 25 123-147 32-56 (158)
375 2wsm_A Hydrogenase expression/ 93.0 0.067 2.3E-06 52.4 4.3 41 101-147 13-53 (221)
376 1sq5_A Pantothenate kinase; P- 93.0 0.1 3.6E-06 54.0 5.9 25 122-146 78-102 (308)
377 3aez_A Pantothenate kinase; tr 93.0 0.055 1.9E-06 56.0 3.8 25 122-146 88-112 (312)
378 2pez_A Bifunctional 3'-phospho 92.9 0.06 2E-06 50.7 3.6 25 123-147 4-28 (179)
379 1tue_A Replication protein E1; 92.9 0.061 2.1E-06 51.2 3.5 38 105-147 44-81 (212)
380 2j37_W Signal recognition part 92.9 0.83 2.8E-05 50.4 13.2 26 122-147 99-124 (504)
381 1nn5_A Similar to deoxythymidy 92.9 0.053 1.8E-06 52.8 3.3 25 123-147 8-32 (215)
382 3zvl_A Bifunctional polynucleo 92.9 0.21 7.1E-06 54.2 8.3 26 122-147 256-281 (416)
383 2jeo_A Uridine-cytidine kinase 92.9 0.06 2.1E-06 53.8 3.7 24 123-146 24-47 (245)
384 3dzd_A Transcriptional regulat 92.9 0.26 9E-06 52.3 8.9 157 97-270 129-313 (368)
385 2fz4_A DNA repair protein RAD2 92.8 0.47 1.6E-05 46.9 10.2 100 127-240 111-226 (237)
386 2pbr_A DTMP kinase, thymidylat 92.8 0.055 1.9E-06 51.7 3.3 22 126-147 2-23 (195)
387 2bbw_A Adenylate kinase 4, AK4 92.8 0.054 1.8E-06 54.2 3.3 23 124-146 27-49 (246)
388 1znw_A Guanylate kinase, GMP k 92.8 0.056 1.9E-06 52.4 3.3 25 123-147 19-43 (207)
389 3tif_A Uncharacterized ABC tra 92.8 0.08 2.7E-06 52.4 4.4 35 123-160 30-64 (235)
390 2wwf_A Thymidilate kinase, put 92.7 0.054 1.8E-06 52.6 3.1 25 123-147 9-33 (212)
391 3cmu_A Protein RECA, recombina 92.7 0.13 4.3E-06 65.7 7.0 83 123-212 1426-1514(2050)
392 3llm_A ATP-dependent RNA helic 92.7 0.43 1.5E-05 47.1 9.7 89 125-214 77-187 (235)
393 1zd8_A GTP:AMP phosphotransfer 92.7 0.054 1.9E-06 53.4 3.0 24 123-146 6-29 (227)
394 2pcj_A ABC transporter, lipopr 92.6 0.089 3E-06 51.6 4.5 23 124-146 30-52 (224)
395 2onk_A Molybdate/tungstate ABC 92.6 0.084 2.9E-06 52.3 4.3 24 122-146 23-46 (240)
396 2f6r_A COA synthase, bifunctio 92.6 0.073 2.5E-06 54.4 4.0 24 123-146 74-97 (281)
397 1aky_A Adenylate kinase; ATP:A 92.6 0.057 2E-06 52.9 3.1 23 124-146 4-26 (220)
398 1m7g_A Adenylylsulfate kinase; 92.5 0.073 2.5E-06 51.7 3.8 25 123-147 24-48 (211)
399 3b5x_A Lipid A export ATP-bind 92.5 0.67 2.3E-05 52.7 12.3 24 123-146 368-391 (582)
400 4e22_A Cytidylate kinase; P-lo 92.5 0.061 2.1E-06 54.0 3.3 23 124-146 27-49 (252)
401 1z6g_A Guanylate kinase; struc 92.5 0.05 1.7E-06 53.3 2.5 25 123-147 22-46 (218)
402 1rj9_A FTSY, signal recognitio 92.5 0.057 2E-06 55.7 3.0 25 123-147 101-125 (304)
403 1vht_A Dephospho-COA kinase; s 92.5 0.076 2.6E-06 51.9 3.8 23 124-146 4-26 (218)
404 3gfo_A Cobalt import ATP-bindi 92.4 0.091 3.1E-06 53.2 4.4 23 124-146 34-56 (275)
405 1g41_A Heat shock protein HSLU 92.4 0.091 3.1E-06 56.8 4.6 51 97-147 15-73 (444)
406 1s96_A Guanylate kinase, GMP k 92.4 0.064 2.2E-06 52.4 3.0 25 123-147 15-39 (219)
407 2z0h_A DTMP kinase, thymidylat 92.4 0.069 2.4E-06 51.1 3.3 22 126-147 2-23 (197)
408 3fb4_A Adenylate kinase; psych 92.3 0.069 2.4E-06 52.1 3.3 21 126-146 2-22 (216)
409 1b0u_A Histidine permease; ABC 92.3 0.096 3.3E-06 52.7 4.4 24 123-146 31-54 (262)
410 2v54_A DTMP kinase, thymidylat 92.3 0.07 2.4E-06 51.4 3.2 24 124-147 4-27 (204)
411 1zak_A Adenylate kinase; ATP:A 92.3 0.058 2E-06 52.9 2.7 24 124-147 5-28 (222)
412 3dl0_A Adenylate kinase; phosp 92.1 0.075 2.6E-06 51.8 3.3 21 126-146 2-22 (216)
413 4g1u_C Hemin import ATP-bindin 92.1 0.11 3.7E-06 52.4 4.4 24 123-146 36-59 (266)
414 3p32_A Probable GTPase RV1496/ 92.0 0.15 5E-06 54.1 5.6 38 106-147 65-102 (355)
415 1gtv_A TMK, thymidylate kinase 92.0 0.048 1.6E-06 53.1 1.7 22 126-147 2-23 (214)
416 3b9q_A Chloroplast SRP recepto 92.0 0.088 3E-06 54.2 3.7 26 122-147 98-123 (302)
417 2f1r_A Molybdopterin-guanine d 92.0 0.047 1.6E-06 50.9 1.5 23 125-147 3-25 (171)
418 2ged_A SR-beta, signal recogni 92.0 0.12 4.2E-06 49.0 4.6 25 123-147 47-71 (193)
419 1ny5_A Transcriptional regulat 92.0 1 3.4E-05 48.2 12.2 128 98-242 138-281 (387)
420 3k1j_A LON protease, ATP-depen 91.9 0.11 3.9E-06 59.4 5.0 43 97-147 41-83 (604)
421 3end_A Light-independent proto 91.9 0.14 4.8E-06 53.1 5.3 43 122-166 39-81 (307)
422 2olj_A Amino acid ABC transpor 91.9 0.11 3.9E-06 52.1 4.4 24 123-146 49-72 (263)
423 1sgw_A Putative ABC transporte 91.9 0.1 3.4E-06 50.7 3.8 23 124-146 35-57 (214)
424 1ji0_A ABC transporter; ATP bi 91.9 0.12 4E-06 51.4 4.4 23 124-146 32-54 (240)
425 3nwj_A ATSK2; P loop, shikimat 91.9 0.07 2.4E-06 53.2 2.7 23 124-146 48-70 (250)
426 2i3b_A HCR-ntpase, human cance 91.9 0.072 2.5E-06 50.7 2.6 22 126-147 3-24 (189)
427 3be4_A Adenylate kinase; malar 91.8 0.076 2.6E-06 51.9 2.8 24 124-147 5-28 (217)
428 1vpl_A ABC transporter, ATP-bi 91.8 0.12 4.2E-06 51.7 4.4 24 123-146 40-63 (256)
429 1g6h_A High-affinity branched- 91.8 0.12 4.2E-06 51.8 4.4 24 123-146 32-55 (257)
430 1mv5_A LMRA, multidrug resista 91.7 0.12 4.3E-06 51.3 4.4 24 123-146 27-50 (243)
431 3ake_A Cytidylate kinase; CMP 91.7 0.09 3.1E-06 50.8 3.3 21 126-146 4-24 (208)
432 2ixe_A Antigen peptide transpo 91.7 0.12 4.2E-06 52.2 4.4 24 123-146 44-67 (271)
433 2ehv_A Hypothetical protein PH 91.7 0.087 3E-06 52.7 3.3 24 123-146 29-52 (251)
434 3r20_A Cytidylate kinase; stru 91.7 0.093 3.2E-06 51.6 3.3 23 124-146 9-31 (233)
435 2r6a_A DNAB helicase, replicat 91.7 1.2 4E-05 48.9 12.5 52 123-177 202-253 (454)
436 3d3q_A TRNA delta(2)-isopenten 91.6 0.097 3.3E-06 54.4 3.5 23 125-147 8-30 (340)
437 3vr4_D V-type sodium ATPase su 91.5 0.24 8.3E-06 53.2 6.4 100 108-212 140-257 (465)
438 3a8t_A Adenylate isopentenyltr 91.5 0.11 3.9E-06 53.7 3.8 25 123-147 39-63 (339)
439 3b85_A Phosphate starvation-in 91.4 0.085 2.9E-06 51.0 2.7 23 125-147 23-45 (208)
440 1e4v_A Adenylate kinase; trans 91.4 0.1 3.5E-06 50.8 3.4 21 126-146 2-22 (214)
441 2yz2_A Putative ABC transporte 91.4 0.14 4.7E-06 51.7 4.4 24 123-146 32-55 (266)
442 1yrb_A ATP(GTP)binding protein 91.4 0.12 4.1E-06 52.1 3.9 26 122-147 12-37 (262)
443 2xb4_A Adenylate kinase; ATP-b 91.3 0.1 3.6E-06 51.1 3.3 21 126-146 2-22 (223)
444 3exa_A TRNA delta(2)-isopenten 91.3 0.12 4E-06 52.9 3.6 24 124-147 3-26 (322)
445 1np6_A Molybdopterin-guanine d 91.3 0.1 3.4E-06 48.8 2.9 25 123-147 5-29 (174)
446 2wji_A Ferrous iron transport 91.3 0.15 5E-06 47.2 4.1 24 124-147 3-26 (165)
447 3lnc_A Guanylate kinase, GMP k 91.3 0.071 2.4E-06 52.7 2.0 23 124-146 27-50 (231)
448 3cmu_A Protein RECA, recombina 91.3 0.39 1.3E-05 61.4 8.9 84 123-213 382-471 (2050)
449 3crm_A TRNA delta(2)-isopenten 91.2 0.11 3.9E-06 53.5 3.5 24 124-147 5-28 (323)
450 3sr0_A Adenylate kinase; phosp 91.2 0.11 3.9E-06 50.0 3.3 22 126-147 2-23 (206)
451 3vkw_A Replicase large subunit 91.2 0.4 1.4E-05 51.6 7.8 25 122-146 159-183 (446)
452 2ihy_A ABC transporter, ATP-bi 91.2 0.15 5.2E-06 51.8 4.4 24 123-146 46-69 (279)
453 2og2_A Putative signal recogni 91.1 0.12 4.1E-06 54.4 3.7 26 122-147 155-180 (359)
454 1ak2_A Adenylate kinase isoenz 91.1 0.11 3.8E-06 51.4 3.2 24 124-147 16-39 (233)
455 1ltq_A Polynucleotide kinase; 91.1 0.12 3.9E-06 53.5 3.5 22 125-146 3-24 (301)
456 3vkg_A Dynein heavy chain, cyt 91.1 3.2 0.00011 55.7 17.5 233 127-407 1307-1575(3245)
457 3foz_A TRNA delta(2)-isopenten 90.9 0.15 5.1E-06 52.0 3.9 25 123-147 9-33 (316)
458 2j9r_A Thymidine kinase; TK1, 90.8 0.27 9.1E-06 47.2 5.4 110 123-243 27-138 (214)
459 2qi9_C Vitamin B12 import ATP- 90.8 0.18 6.1E-06 50.3 4.4 23 124-146 26-48 (249)
460 1a7j_A Phosphoribulokinase; tr 90.8 0.07 2.4E-06 54.7 1.4 24 123-146 4-27 (290)
461 1oix_A RAS-related protein RAB 90.7 0.14 4.6E-06 48.8 3.4 24 124-147 29-52 (191)
462 3cmw_A Protein RECA, recombina 90.7 0.31 1.1E-05 61.4 7.3 81 125-212 384-470 (1706)
463 3gqb_B V-type ATP synthase bet 90.7 0.26 8.7E-06 53.0 5.7 100 108-212 136-260 (464)
464 2d2e_A SUFC protein; ABC-ATPas 90.6 0.13 4.4E-06 51.4 3.3 23 124-146 29-51 (250)
465 3b60_A Lipid A export ATP-bind 90.6 0.84 2.9E-05 51.8 10.4 24 123-146 368-391 (582)
466 2qmh_A HPR kinase/phosphorylas 90.6 0.15 5.1E-06 48.2 3.3 24 124-147 34-57 (205)
467 2zu0_C Probable ATP-dependent 90.5 0.14 4.6E-06 51.8 3.3 24 123-146 45-68 (267)
468 1g8f_A Sulfate adenylyltransfe 90.5 0.22 7.7E-06 54.9 5.2 47 97-147 372-418 (511)
469 2eyu_A Twitching motility prot 90.5 0.16 5.4E-06 51.1 3.7 108 123-244 24-134 (261)
470 3hjn_A DTMP kinase, thymidylat 90.4 0.43 1.5E-05 45.6 6.6 49 126-176 2-50 (197)
471 2r8r_A Sensor protein; KDPD, P 90.4 0.28 9.7E-06 47.5 5.2 104 126-243 8-127 (228)
472 2c61_A A-type ATP synthase non 90.4 0.32 1.1E-05 52.5 6.2 100 108-212 141-258 (469)
473 3f9v_A Minichromosome maintena 90.3 0.1 3.5E-06 59.4 2.4 52 96-147 294-350 (595)
474 3mfy_A V-type ATP synthase alp 90.3 0.48 1.7E-05 51.9 7.5 59 108-175 216-275 (588)
475 3fvq_A Fe(3+) IONS import ATP- 90.3 0.22 7.5E-06 52.3 4.7 24 123-146 29-52 (359)
476 2zej_A Dardarin, leucine-rich 90.3 0.13 4.4E-06 48.6 2.7 22 126-147 4-25 (184)
477 1xx6_A Thymidine kinase; NESG, 90.3 0.092 3.1E-06 49.9 1.7 110 123-243 7-118 (191)
478 3j16_B RLI1P; ribosome recycli 90.2 2 6.9E-05 48.6 12.9 24 123-146 102-125 (608)
479 3vr4_A V-type sodium ATPase ca 90.2 0.8 2.7E-05 50.4 9.1 58 108-174 221-279 (600)
480 2ghi_A Transport protein; mult 90.2 0.14 4.8E-06 51.5 3.0 24 123-146 45-68 (260)
481 3j16_B RLI1P; ribosome recycli 90.2 1.3 4.6E-05 50.1 11.4 124 125-248 379-533 (608)
482 2r9v_A ATP synthase subunit al 90.1 0.39 1.3E-05 52.3 6.5 96 108-212 164-276 (515)
483 4eaq_A DTMP kinase, thymidylat 90.1 0.19 6.3E-06 49.5 3.8 25 123-147 25-49 (229)
484 2xau_A PRE-mRNA-splicing facto 90.0 1.5 5E-05 51.6 12.0 89 125-213 110-218 (773)
485 2yl4_A ATP-binding cassette SU 90.0 0.72 2.4E-05 52.6 9.1 24 123-146 369-392 (595)
486 2v9p_A Replication protein E1; 89.9 0.16 5.4E-06 52.1 3.2 24 123-146 125-148 (305)
487 2dyk_A GTP-binding protein; GT 89.9 0.19 6.6E-06 45.8 3.6 23 125-147 2-24 (161)
488 2vp4_A Deoxynucleoside kinase; 89.9 0.15 5.2E-06 50.2 3.0 25 122-146 18-42 (230)
489 1tf7_A KAIC; homohexamer, hexa 89.9 0.22 7.6E-06 55.9 4.7 25 123-147 280-304 (525)
490 1q3t_A Cytidylate kinase; nucl 89.9 0.16 5.5E-06 50.2 3.2 25 122-146 14-38 (236)
491 2ocp_A DGK, deoxyguanosine kin 89.9 0.19 6.5E-06 49.9 3.7 24 124-147 2-25 (241)
492 2f9l_A RAB11B, member RAS onco 89.9 0.16 5.3E-06 48.7 3.0 24 124-147 5-28 (199)
493 1cp2_A CP2, nitrogenase iron p 89.8 0.32 1.1E-05 49.1 5.5 39 125-165 2-40 (269)
494 2wjg_A FEOB, ferrous iron tran 89.8 0.21 7.1E-06 47.1 3.8 25 123-147 6-30 (188)
495 1nlf_A Regulatory protein REPA 89.8 0.17 5.8E-06 51.6 3.4 24 123-146 29-52 (279)
496 4aby_A DNA repair protein RECN 89.8 0.96 3.3E-05 48.9 9.6 50 199-248 309-361 (415)
497 2zts_A Putative uncharacterize 89.8 0.28 9.5E-06 48.8 4.9 50 123-175 29-78 (251)
498 2ce2_X GTPase HRAS; signaling 89.7 0.18 6.2E-06 46.1 3.2 22 126-147 5-26 (166)
499 1svm_A Large T antigen; AAA+ f 89.7 0.16 5.6E-06 53.8 3.2 24 123-146 168-191 (377)
500 3qf4_A ABC transporter, ATP-bi 89.7 1.6 5.5E-05 49.5 11.7 24 123-146 368-391 (587)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.4e-49 Score=457.01 Aligned_cols=316 Identities=18% Similarity=0.234 Sum_probs=256.9
Q ss_pred ccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHh--ccccccccCeeEEEEeCCcc--CHHHHHHHH
Q 003037 100 RGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYN--NNDVINHFEKRIWVCVSDPF--DEFRIAKAI 175 (854)
Q Consensus 100 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~--~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i 175 (854)
|||++++++|.++|.... ....++|+|+||||+||||||+++|+ +.+++.+|++++||++++.+ ++..++..|
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 599999999999997542 23689999999999999999999998 66889999999999999875 789999999
Q ss_pred HHHhcCCCC-------CCccHHHHHHHHHHHhcCC-eEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccHHHHh
Q 003037 176 IEALEGSTP-------SLGELNSLLERIYASIARK-KFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKMTVAQ 247 (854)
Q Consensus 176 ~~~l~~~~~-------~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 247 (854)
+.+++.... ...+.+.+...+++.|+++ ||||||||||+.+...|.. .+||+||||||++.++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHH
Confidence 999986521 2234567789999999996 9999999999853222332 17999999999999998
Q ss_pred hcc-CcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHHHhhhccCCCHHHHHHHHhhh
Q 003037 248 MMQ-SNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTIGSLLRFKRSSREWQSILDSE 326 (854)
Q Consensus 248 ~~~-~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~l~~~~~~~~w~~~~~~~ 326 (854)
.+. ...+|+|++|+.+|||+||.++++... ..+.+.+++++|+++|+|+||||+++|+.++.+ + .+|...+...
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~ 354 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNK 354 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHHH
Confidence 775 346799999999999999999987542 246788899999999999999999999999765 3 2333444433
Q ss_pred cCCccccccCccchhhcccCCChHHHHHHHh-----------hhhcCCCCceechHHHHHHHHHh--CcccCCC-CchHH
Q 003037 327 IGQLEEFERGLLPPLLLSYNDMPSVIKWSFS-----------YCAIFPKDYNIEKDELIKLWLAQ--GYIRPKE-NKELE 392 (854)
Q Consensus 327 ~~~~~~~~~~v~~~l~~sy~~L~~~~k~cf~-----------~~s~fp~~~~i~~~~li~~Wia~--g~i~~~~-~~~~e 392 (854)
.+.. ....+.+++.+||+.||+++|.||+ |||+||+++.|+ +.+|+|+ ||+...+ +.+++
T Consensus 355 l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~ 428 (549)
T 2a5y_B 355 LESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDD 428 (549)
T ss_dssp HHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTH
T ss_pred hhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHH
Confidence 3221 2356999999999999999999999 999999999999 8999999 9998776 67788
Q ss_pred HHHHHHHHHHHhccccccccccCCCCeEeEEEechhHHHHHHHhhccceE
Q 003037 393 MIVEEYFDYLAARSFFQEFEREHTEGLVVRCKMHDIVHDFAQYLTKNECL 442 (854)
Q Consensus 393 ~~~~~~l~~L~~~sli~~~~~~~~~~~~~~~~mHdlv~~~a~~~~~~e~~ 442 (854)
++++ ||++|+++|||+....+ ... +|+|||++|+||++++.+++.
T Consensus 429 ~~~~-~l~~L~~rsLl~~~~~~---~~~-~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 429 EVAD-RLKRLSKRGALLSGKRM---PVL-TFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHH-HHHHTTTBSSCSEEECS---SSC-EEECCHHHHHHHHTTSCTHHH
T ss_pred HHHH-HHHHHHHcCCeeEecCC---Cce-EEEeChHHHHHHHHHHHHHHH
Confidence 8888 99999999999987643 222 699999999999999888765
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=8.6e-40 Score=377.14 Aligned_cols=286 Identities=18% Similarity=0.181 Sum_probs=228.4
Q ss_pred ccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCe-eEEEEeCCccCHHHHHHHHH
Q 003037 98 EVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEK-RIWVCVSDPFDEFRIAKAII 176 (854)
Q Consensus 98 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i~ 176 (854)
..|||++++++|.++|... +..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..++
T Consensus 129 ~~VGRe~eLeeL~elL~~~-----d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLEL-----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHC-----CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhcc-----CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 3599999999999999742 24789999999999999999999998778899986 89999999999888888887
Q ss_pred HHhcCC------CCC-----CccHHHHHHHHHHHh---cCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEeccc
Q 003037 177 EALEGS------TPS-----LGELNSLLERIYASI---ARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRK 242 (854)
Q Consensus 177 ~~l~~~------~~~-----~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 242 (854)
+.++.. ... ..+.+.+...+++.+ .++|+||||||||+ ...|+.+ + +||+||||||+
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd--~eqLe~f----~---pGSRILVTTRd 274 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNAF----N---LSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC--HHHHHHH----H---SSCCEEEECSC
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh--HHHHHhh----C---CCeEEEEeccC
Confidence 754321 000 123455666777766 68999999999987 4566554 2 68999999999
Q ss_pred HHHHhhccCcceEecC------CCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHHHhhhccCC-C
Q 003037 243 MTVAQMMQSNDVILIR------ELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTIGSLLRFKR-S 315 (854)
Q Consensus 243 ~~v~~~~~~~~~~~l~------~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~l~~~~-~ 315 (854)
+.++..+.....+.++ +|+.+|||+||++.. +.. . .++..+| |+|+||||+++|+.|+.+. +
T Consensus 275 ~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~----~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s 343 (1221)
T 1vt4_I 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR----P---QDLPREV---LTTNPRRLSIIAESIRDGLAT 343 (1221)
T ss_dssp SHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC----T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSS
T ss_pred hHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC----H---HHHHHHH---hCCCHHHHHHHHHHHhCCCCC
Confidence 9988655444456666 999999999999884 221 1 1223333 9999999999999999874 6
Q ss_pred HHHHHHHHhhhcCCccccccCccchhhcccCCChHHH-HHHHhhhhcCCCCceechHHHHHHHHHhCcccCCCCchHHHH
Q 003037 316 SREWQSILDSEIGQLEEFERGLLPPLLLSYNDMPSVI-KWSFSYCAIFPKDYNIEKDELIKLWLAQGYIRPKENKELEMI 394 (854)
Q Consensus 316 ~~~w~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~-k~cf~~~s~fp~~~~i~~~~li~~Wia~g~i~~~~~~~~e~~ 394 (854)
.++|+.. ....+..+|.+||+.||++. |.||+|||+||+++.|+.+.++.+|+++| ++.
T Consensus 344 ~eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eed 403 (1221)
T 1vt4_I 344 WDNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSD 403 (1221)
T ss_dssp HHHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHH
T ss_pred HHHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHH
Confidence 7888753 12458899999999999999 99999999999999999999999999887 135
Q ss_pred HHHHHHHHHhccccccccccCCCCeEeEEEechhHHHHHH
Q 003037 395 VEEYFDYLAARSFFQEFEREHTEGLVVRCKMHDIVHDFAQ 434 (854)
Q Consensus 395 ~~~~l~~L~~~sli~~~~~~~~~~~~~~~~mHdlv~~~a~ 434 (854)
+++++++|+++|||+..... . +|+|||++++++.
T Consensus 404 Ae~~L~eLvdRSLLq~d~~~-----~-rYrMHDLllELr~ 437 (1221)
T 1vt4_I 404 VMVVVNKLHKYSLVEKQPKE-----S-TISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHHTSSSSSBCSSS-----S-EEBCCCHHHHHHH
T ss_pred HHHHHHHHHhhCCEEEeCCC-----C-EEEehHHHHHHhc
Confidence 88899999999999984211 1 6999999999653
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.1e-38 Score=407.03 Aligned_cols=315 Identities=21% Similarity=0.264 Sum_probs=248.7
Q ss_pred cccccCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhcccc-cccc-CeeEEEEeCCcc--
Q 003037 91 TSLIDVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDV-INHF-EKRIWVCVSDPF-- 166 (854)
Q Consensus 91 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~s~~~-- 166 (854)
..+..++.||||++++++|.++|.... +..++|+|+||||+||||||+++|++.+. ..+| +.++||++++..
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 193 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKS 193 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCch
Confidence 345566789999999999999997543 36899999999999999999999997443 4445 677799998854
Q ss_pred CHHHHHHHHHHHhcCCC----CCCccHHHHHHHHHHHhcCC--eEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEec
Q 003037 167 DEFRIAKAIIEALEGST----PSLGELNSLLERIYASIARK--KFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTT 240 (854)
Q Consensus 167 ~~~~~~~~i~~~l~~~~----~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt 240 (854)
+....+..++..+.... ....+.+.+...++..+.++ |+||||||||+. ..|+ ...+||+|||||
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~-------~~~~~~~ilvTt 264 (1249)
T 3sfz_A 194 GLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLK-------AFDNQCQILLTT 264 (1249)
T ss_dssp HHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHT-------TTCSSCEEEEEE
T ss_pred HHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHH-------hhcCCCEEEEEc
Confidence 34455677777776542 22356788889999999877 999999999863 3332 336799999999
Q ss_pred ccHHHHhh-ccCcceEecCC-CCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHHHhhhccCCCHHH
Q 003037 241 RKMTVAQM-MQSNDVILIRE-LSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTIGSLLRFKRSSRE 318 (854)
Q Consensus 241 R~~~v~~~-~~~~~~~~l~~-L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~l~~~~~~~~ 318 (854)
|++.++.. ......+++.+ |+.+||++||...++... +.+.+++++|+++|+|+||||+++|++|+.+. ..
T Consensus 265 R~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~ 337 (1249)
T 3sfz_A 265 RDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NR 337 (1249)
T ss_dssp SSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SC
T ss_pred CCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh-----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hH
Confidence 99998854 45567899996 999999999999885322 23445688999999999999999999998765 34
Q ss_pred HHHHHhhhcCCc----c----ccccCccchhhcccCCChHHHHHHHhhhhcCCCCceechHHHHHHHHHhCcccCCCCch
Q 003037 319 WQSILDSEIGQL----E----EFERGLLPPLLLSYNDMPSVIKWSFSYCAIFPKDYNIEKDELIKLWLAQGYIRPKENKE 390 (854)
Q Consensus 319 w~~~~~~~~~~~----~----~~~~~v~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~Wia~g~i~~~~~~~ 390 (854)
|...++...... . ...+.+..+|.+||+.||+++|.||+|||+||+++.|+++.++.+|.++
T Consensus 338 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~---------- 407 (1249)
T 3sfz_A 338 WAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE---------- 407 (1249)
T ss_dssp HHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC----------
T ss_pred HHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC----------
Confidence 666555432221 1 1113588999999999999999999999999999999999999999664
Q ss_pred HHHHHHHHHHHHHhccccccccccCCCCeEeEEEechhHHHHHHHhhccc
Q 003037 391 LEMIVEEYFDYLAARSFFQEFEREHTEGLVVRCKMHDIVHDFAQYLTKNE 440 (854)
Q Consensus 391 ~e~~~~~~l~~L~~~sli~~~~~~~~~~~~~~~~mHdlv~~~a~~~~~~e 440 (854)
++.+++++++|+++|||+.... +... +|+||+++|++|+..+.++
T Consensus 408 -~~~~~~~l~~L~~~sl~~~~~~---~~~~-~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 -TEEVEDILQEFVNKSLLFCNRN---GKSF-CYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp -HHHHHHHHHHHHHTTSCEEEES---SSSE-EEECCHHHHHHHHHHTGGG
T ss_pred -HHHHHHHHHHHHhccceEEecC---CCce-EEEecHHHHHHHHhhhhHH
Confidence 3668899999999999986543 3333 6999999999999987665
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=7.8e-36 Score=348.54 Aligned_cols=309 Identities=22% Similarity=0.271 Sum_probs=235.5
Q ss_pred ccccCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhcccc-cccc-CeeEEEEeCCccCHH
Q 003037 92 SLIDVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDV-INHF-EKRIWVCVSDPFDEF 169 (854)
Q Consensus 92 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~s~~~~~~ 169 (854)
.+..++.||||++++++|.++|.... +..++|+|+||||+||||||++++++.++ ..+| +.++|++++.. +..
T Consensus 119 ~P~~~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~ 193 (591)
T 1z6t_A 119 VPQRPVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKS 193 (591)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHH
T ss_pred CCCCCCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chH
Confidence 34566789999999999999997542 35789999999999999999999997555 7789 58999999875 333
Q ss_pred HHHHHH---HHHhcCC----CCCCccHHHHHHHHHHHhcC--CeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEec
Q 003037 170 RIAKAI---IEALEGS----TPSLGELNSLLERIYASIAR--KKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTT 240 (854)
Q Consensus 170 ~~~~~i---~~~l~~~----~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt 240 (854)
.++..+ +..++.. .....+.+.+...+...+.+ +++||||||+|+. ..+ .....|++|||||
T Consensus 194 ~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l-------~~l~~~~~ilvTs 264 (591)
T 1z6t_A 194 GLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVL-------KAFDSQCQILLTT 264 (591)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHH-------HTTCSSCEEEEEE
T ss_pred HHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--HHH-------HHhcCCCeEEEEC
Confidence 344333 4455421 12345677788888888876 7899999999863 222 2235789999999
Q ss_pred ccHHHHhhccCcceEec---CCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHHHhhhccCCCHH
Q 003037 241 RKMTVAQMMQSNDVILI---RELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTIGSLLRFKRSSR 317 (854)
Q Consensus 241 R~~~v~~~~~~~~~~~l---~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~l~~~~~~~ 317 (854)
|+..++..+. ...+++ .+|+.+|+++||...++.. .....+.+.+|+++|+|+||||+.+|+.++... .
T Consensus 265 R~~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~ 336 (591)
T 1z6t_A 265 RDKSVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--N 336 (591)
T ss_dssp SCGGGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--T
T ss_pred CCcHHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--h
Confidence 9998876543 334444 5899999999999988632 222345688999999999999999999998764 3
Q ss_pred HHHHHHhhhcCCc----c----ccccCccchhhcccCCChHHHHHHHhhhhcCCCCceechHHHHHHHHHhCcccCCCCc
Q 003037 318 EWQSILDSEIGQL----E----EFERGLLPPLLLSYNDMPSVIKWSFSYCAIFPKDYNIEKDELIKLWLAQGYIRPKENK 389 (854)
Q Consensus 318 ~w~~~~~~~~~~~----~----~~~~~v~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~Wia~g~i~~~~~~ 389 (854)
.|...++...... . .....+..++..||+.||++.|.||++||+||+++.|+.+.+..+|.++
T Consensus 337 ~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~--------- 407 (591)
T 1z6t_A 337 RWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME--------- 407 (591)
T ss_dssp CHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC---------
T ss_pred hHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC---------
Confidence 5776665433221 1 1123578899999999999999999999999999999999999999653
Q ss_pred hHHHHHHHHHHHHHhccccccccccCCCCeEeEEEechhHHHHHHHhh
Q 003037 390 ELEMIVEEYFDYLAARSFFQEFEREHTEGLVVRCKMHDIVHDFAQYLT 437 (854)
Q Consensus 390 ~~e~~~~~~l~~L~~~sli~~~~~~~~~~~~~~~~mHdlv~~~a~~~~ 437 (854)
.+.+++++++|+++|||+.... +... +|+||++++++++...
T Consensus 408 --~~~~~~~l~~L~~~~Ll~~~~~---~~~~-~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 408 --TEEVEDILQEFVNKSLLFCDRN---GKSF-RYYLHDLQVDFLTEKN 449 (591)
T ss_dssp --HHHHHHHHHHHHHTTSSEEEEE---TTEE-EEECCHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHhCcCeEEecC---CCcc-EEEEcHHHHHHHHhhh
Confidence 2457889999999999985432 2233 6999999999998873
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=5.4e-25 Score=264.30 Aligned_cols=361 Identities=19% Similarity=0.182 Sum_probs=232.7
Q ss_pred CceEEEEeeeCCCC--CCcccccCCCceEEEEecCCCCcccCchhh-hhcCCCcccEEEecCCCCccccccccc-ccccc
Q 003037 459 EKVRHSMLKLGYDS--FPDSIFSAKKLRSFLIHSTNKDLISPVLPV-LFDQLTCLRTLKITGISGEKRYFRIIV-EIPKE 534 (854)
Q Consensus 459 ~~~r~l~l~~~~~~--~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~-~~~~l~~Lr~L~L~~~~~~~~~~~~i~-~lP~~ 534 (854)
.+++++.+..+... .|..+..+++|++|.+.+|. +.+.+|. .+.++++|++|++++|. +. .+|..
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~---l~~~ip~~~l~~l~~L~~L~Ls~n~--------l~~~~p~~ 362 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN---FSGELPMDTLLKMRGLKVLDLSFNE--------FSGELPES 362 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSE---EEEECCHHHHTTCTTCCEEECCSSE--------EEECCCTT
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCc---ccCcCCHHHHhcCCCCCEEeCcCCc--------cCccccHH
Confidence 56777777666542 56667777778888777776 4423443 37777888888888777 44 67777
Q ss_pred ccccC-CCceeeecCCCCc-ccchhhhc--CCCCcEEeecCcccccccccccccCCCCcccCceeecCCCCCCccccccc
Q 003037 535 IKKLI-HLRFLKLVWLDIE-ELPETCCE--LFNVQTLEVLDCRSFRRLPQGFGKLVNLRNLSKFIVSRSGGSKLEDLRQL 610 (854)
Q Consensus 535 i~~L~-~L~~L~L~~~~i~-~lP~~i~~--L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L 610 (854)
++++. +|++|++++|.+. .+|..++. +++|++|++++|.....+|..++++++|++|........ +.....+..+
T Consensus 363 l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l 441 (768)
T 3rgz_A 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS-GTIPSSLGSL 441 (768)
T ss_dssp HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEE-SCCCGGGGGC
T ss_pred HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCccc-CcccHHHhcC
Confidence 77776 7788888777765 46666665 778888888888744478888888888888843222111 1222334455
Q ss_pred ccCCceeEEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCc
Q 003037 611 KHLRGSLKIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPS 690 (854)
Q Consensus 611 ~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~ 690 (854)
.+|+ .|.+.+. ......+..+..+++|+.|+++.|. ....++..+..+++|+.|++ .++.....+|.
T Consensus 442 ~~L~-~L~L~~n----~l~~~~p~~~~~l~~L~~L~L~~N~-------l~~~~p~~l~~l~~L~~L~L-~~N~l~~~~p~ 508 (768)
T 3rgz_A 442 SKLR-DLKLWLN----MLEGEIPQELMYVKTLETLILDFND-------LTGEIPSGLSNCTNLNWISL-SNNRLTGEIPK 508 (768)
T ss_dssp TTCC-EEECCSS----CCCSCCCGGGGGCTTCCEEECCSSC-------CCSCCCGGGGGCTTCCEEEC-CSSCCCSCCCG
T ss_pred CCCC-EEECCCC----cccCcCCHHHcCCCCceEEEecCCc-------ccCcCCHHHhcCCCCCEEEc-cCCccCCcCCh
Confidence 5555 6666542 2222344567788999999998872 22234556777889999999 66666655899
Q ss_pred hhhcccCccEEEEecccCCCCCCC-CCCCCCCCEEEEcCCCCceEeCccccCCCCC------------------------
Q 003037 691 WIVSLNKLKKLVLYQFYLCDTMPP-LGKLPSLEILEIRGNWNVKRVGDEFLGVGGG------------------------ 745 (854)
Q Consensus 691 ~~~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~------------------------ 745 (854)
|++.+++|+.|+|++|.+.+.+|. ++.+++|+.|+|++|...+.+|..++.....
T Consensus 509 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (768)
T 3rgz_A 509 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH 588 (768)
T ss_dssp GGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCC
T ss_pred HHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccc
Confidence 999999999999999988776665 8889999999999987555666544321100
Q ss_pred -------------------------------------------CCCccc---------cCCccccCCCccceeecccccc
Q 003037 746 -------------------------------------------DHLHGI---------STSSSVIAFPKLKQVLFYNICH 773 (854)
Q Consensus 746 -------------------------------------------~~l~~~---------~~~~~~~~~~~L~~L~l~~~~~ 773 (854)
..+..+ ..+...+.+++|+.|+++++
T Consensus 589 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N-- 666 (768)
T 3rgz_A 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN-- 666 (768)
T ss_dssp SSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS--
T ss_pred ccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCC--
Confidence 001100 01123455667777777763
Q ss_pred ccccccCCCccccCCCccceeeecccccCcCCCcCCCCCCCcCEEEEecCcchH--------------------------
Q 003037 774 WEEWDFGKGDSITIMPQLKKLEFERCTELKSVPEKLLRSTTLEELSIVECPILV-------------------------- 827 (854)
Q Consensus 774 l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~-------------------------- 827 (854)
.+....+..++.+++|+.|++++|...+.+|..+..+++|++|++++|+--.
T Consensus 667 --~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~ 744 (768)
T 3rgz_A 667 --DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP 744 (768)
T ss_dssp --CCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTT
T ss_pred --ccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCC
Confidence 3333344467789999999999997666889999999999999998874210
Q ss_pred -HhhccCCCCCCCCcCCCCceE
Q 003037 828 -ERYKKYTGQDWSLVSHIPSIK 848 (854)
Q Consensus 828 -~~~~~~~~~~~~~i~hip~i~ 848 (854)
..|....+++|++|+|+|.+.
T Consensus 745 l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 745 LPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp SCCCCSCC--------------
T ss_pred CcCCCCCccCCCCCCCCccccC
Confidence 135567788999999999764
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=2.9e-23 Score=225.41 Aligned_cols=302 Identities=16% Similarity=0.185 Sum_probs=220.1
Q ss_pred cCceEEEEeeeCCCCCCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccc
Q 003037 458 VEKVRHSMLKLGYDSFPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKK 537 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~ 537 (854)
..+++++.+.++.....+.+..+++|++|.+.+|. +.. ++. +.++++|++|++++|. +..+| .+.+
T Consensus 43 l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~---i~~-~~~-~~~l~~L~~L~L~~n~--------i~~~~-~~~~ 108 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQ---ITD-ISP-LSNLVKLTNLYIGTNK--------ITDIS-ALQN 108 (347)
T ss_dssp HTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSC---CCC-CGG-GTTCTTCCEEECCSSC--------CCCCG-GGTT
T ss_pred cccccEEEEeCCccccchhhhhcCCccEEEccCCc---ccc-chh-hhcCCcCCEEEccCCc--------ccCch-HHcC
Confidence 56788999988877756668889999999999987 555 344 8999999999999998 78876 5899
Q ss_pred cCCCceeeecCCCCcccchhhhcCCCCcEEeecCcccccccccccccCCCCcccCceeecCCCCCCcccccccccCCcee
Q 003037 538 LIHLRFLKLVWLDIEELPETCCELFNVQTLEVLDCRSFRRLPQGFGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSL 617 (854)
Q Consensus 538 L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L 617 (854)
+++|++|++++|.+..+|. +.++++|++|++++|.....++. +..+++|++|... .+....+..+..+.+|+ .|
T Consensus 109 l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~---~~~~~~~~~~~~l~~L~-~L 182 (347)
T 4fmz_A 109 LTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVT---ESKVKDVTPIANLTDLY-SL 182 (347)
T ss_dssp CTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECC---SSCCCCCGGGGGCTTCS-EE
T ss_pred CCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEec---CCCcCCchhhccCCCCC-EE
Confidence 9999999999999999987 89999999999999975655554 8888888888433 22222233344555555 66
Q ss_pred EEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCchhhcccC
Q 003037 618 KIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWIVSLNK 697 (854)
Q Consensus 618 ~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~ 697 (854)
.+.+.. +... ..+..+++|+.|+++.+.. .... .+..+++|+.|++ .++.... +|. +..+++
T Consensus 183 ~l~~n~-l~~~-----~~~~~l~~L~~L~l~~n~l--------~~~~-~~~~~~~L~~L~l-~~n~l~~-~~~-~~~l~~ 244 (347)
T 4fmz_A 183 SLNYNQ-IEDI-----SPLASLTSLHYFTAYVNQI--------TDIT-PVANMTRLNSLKI-GNNKITD-LSP-LANLSQ 244 (347)
T ss_dssp ECTTSC-CCCC-----GGGGGCTTCCEEECCSSCC--------CCCG-GGGGCTTCCEEEC-CSSCCCC-CGG-GTTCTT
T ss_pred EccCCc-cccc-----ccccCCCccceeecccCCC--------CCCc-hhhcCCcCCEEEc-cCCccCC-Ccc-hhcCCC
Confidence 665432 1211 1266788888888887721 1111 1556788999999 6665554 555 778889
Q ss_pred ccEEEEecccCCCCCCCCCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCCCccceeecccccccccc
Q 003037 698 LKKLVLYQFYLCDTMPPLGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLKQVLFYNICHWEEW 777 (854)
Q Consensus 698 L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 777 (854)
|+.|++++|.+.. ++.+..+++|+.|++++|. +..++. ...+++|+.|++.++. +...
T Consensus 245 L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~-l~~~~~-------------------~~~l~~L~~L~L~~n~-l~~~ 302 (347)
T 4fmz_A 245 LTWLEIGTNQISD-INAVKDLTKLKMLNVGSNQ-ISDISV-------------------LNNLSQLNSLFLNNNQ-LGNE 302 (347)
T ss_dssp CCEEECCSSCCCC-CGGGTTCTTCCEEECCSSC-CCCCGG-------------------GGGCTTCSEEECCSSC-CCGG
T ss_pred CCEEECCCCccCC-ChhHhcCCCcCEEEccCCc-cCCChh-------------------hcCCCCCCEEECcCCc-CCCc
Confidence 9999999886654 4668888999999999886 444431 2368899999998853 2222
Q ss_pred ccCCCccccCCCccceeeecccccCcCCCcCCCCCCCcCEEEEecCc
Q 003037 778 DFGKGDSITIMPQLKKLEFERCTELKSVPEKLLRSTTLEELSIVECP 824 (854)
Q Consensus 778 ~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 824 (854)
. +..+..+++|++|++++|+ +..+|. +..+++|++|++++|+
T Consensus 303 ~---~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 303 D---MEVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp G---HHHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred C---hhHhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence 2 2245578999999999985 666654 7778999999999886
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=6e-23 Score=244.66 Aligned_cols=337 Identities=16% Similarity=0.173 Sum_probs=219.4
Q ss_pred cCceEEEEeeeCCCC-------------------CCcccc--cCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEec
Q 003037 458 VEKVRHSMLKLGYDS-------------------FPDSIF--SAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKIT 516 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~-------------------~~~~~~--~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~ 516 (854)
..+++.|.+..+... +|..+. ++++|++|.+.+|. +.+.+|..|.++++|++|+|+
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~---l~~~iP~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP---NMTQLPDFLYDLPELQSLNIA 523 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT---TCCSCCGGGGGCSSCCEEECT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC---CCccChHHHhCCCCCCEEECc
Confidence 467889998887654 567766 89999999999987 555578889999999999999
Q ss_pred CCCCccccccccc--cccccccccC-------CCceeeecCCCCcccch--hhhcCCCCcEEeecCcccccccccccccC
Q 003037 517 GISGEKRYFRIIV--EIPKEIKKLI-------HLRFLKLVWLDIEELPE--TCCELFNVQTLEVLDCRSFRRLPQGFGKL 585 (854)
Q Consensus 517 ~~~~~~~~~~~i~--~lP~~i~~L~-------~L~~L~L~~~~i~~lP~--~i~~L~~L~~L~l~~~~~l~~lp~~i~~L 585 (854)
+|.. +. .+|..++++. +|++|+|++|.++.+|. .++++++|++|++++|. +..+| .++.+
T Consensus 524 ~N~~-------lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L 594 (876)
T 4ecn_A 524 CNRG-------ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTN 594 (876)
T ss_dssp TCTT-------SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTT
T ss_pred CCCC-------cccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCC
Confidence 9862 33 4787777766 99999999999999998 89999999999999998 67888 78888
Q ss_pred CCCcccCceeecCCCCCCccccccccc-CCceeEEecccCCCChhHHHHhhccCCC--CCCcEEEEecCCCCCCCcchHH
Q 003037 586 VNLRNLSKFIVSRSGGSKLEDLRQLKH-LRGSLKIQGLGNVRDADEAKSAELEKKK--NLLDLVLSFDGGQRIGDVNDKA 662 (854)
Q Consensus 586 ~~L~~L~~~~~~~~~~~~l~~L~~L~~-L~~~L~i~~l~~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~~~~ 662 (854)
++|++|........ .....+..+.+ |+ .|.+.+.. +. ..+..+..++ +|+.|++++|..... ...
T Consensus 595 ~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~-~L~Ls~N~-L~----~lp~~~~~~~~~~L~~L~Ls~N~l~g~----ip~ 662 (876)
T 4ecn_A 595 VKLTDLKLDYNQIE--EIPEDFCAFTDQVE-GLGFSHNK-LK----YIPNIFNAKSVYVMGSVDFSYNKIGSE----GRN 662 (876)
T ss_dssp SEESEEECCSSCCS--CCCTTSCEECTTCC-EEECCSSC-CC----SCCSCCCTTCSSCEEEEECCSSCTTTT----SSS
T ss_pred CcceEEECcCCccc--cchHHHhhccccCC-EEECcCCC-CC----cCchhhhccccCCCCEEECcCCcCCCc----ccc
Confidence 88888843222211 11112444444 44 55555421 11 1223333333 488888887721100 000
Q ss_pred HhhhCC--CCCCCCeEEEeccCCCCCCCCchhh-cccCccEEEEecccCCCCCCC-CC--------CCCCCCEEEEcCCC
Q 003037 663 IIEALQ--PPPNIESLRIEYHYIGISGWPSWIV-SLNKLKKLVLYQFYLCDTMPP-LG--------KLPSLEILEIRGNW 730 (854)
Q Consensus 663 ~~~~l~--~~~~L~~L~l~~~~~~~~~lp~~~~-~l~~L~~L~L~~~~~~~~l~~-l~--------~L~~L~~L~L~~~~ 730 (854)
++..+. .+++|+.|++ +++.... +|.++. .+++|+.|+|++|.+. .+|. +. ++++|+.|+|++|.
T Consensus 663 l~~~l~~~~~~~L~~L~L-s~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~ 739 (876)
T 4ecn_A 663 ISCSMDDYKGINASTVTL-SYNEIQK-FPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNK 739 (876)
T ss_dssp CSSCTTTCCCCCEEEEEC-CSSCCCS-CCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSC
T ss_pred chhhhccccCCCcCEEEc-cCCcCCc-cCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCC
Confidence 111111 2347788888 5555444 776654 6778888888877665 3332 22 23378888888775
Q ss_pred CceEeCcccc--CCCCCCCCcccc-----CCccccCCCccceeeccccccc--cccccCCCccccCCCccceeeeccccc
Q 003037 731 NVKRVGDEFL--GVGGGDHLHGIS-----TSSSVIAFPKLKQVLFYNICHW--EEWDFGKGDSITIMPQLKKLEFERCTE 801 (854)
Q Consensus 731 ~l~~i~~~~~--~~~~~~~l~~~~-----~~~~~~~~~~L~~L~l~~~~~l--~~~~~~~~~~~~~l~~L~~L~l~~c~~ 801 (854)
+..+|..+. ....+..+.... .+.....+++|+.|.+++++.+ +.+....+..+..+++|+.|+|++|.
T Consensus 740 -L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~- 817 (876)
T 4ecn_A 740 -LTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND- 817 (876)
T ss_dssp -CCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-
T ss_pred -CccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-
Confidence 556665543 333332222111 1223456788899988774422 22333334466789999999999984
Q ss_pred CcCCCcCCCCCCCcCEEEEecCcc
Q 003037 802 LKSVPEKLLRSTTLEELSIVECPI 825 (854)
Q Consensus 802 l~~lp~~l~~l~~L~~L~l~~c~~ 825 (854)
++.+|..+. ++|+.|+|++||.
T Consensus 818 L~~Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 818 IRKVDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp CCBCCSCCC--SSSCEEECCSCTT
T ss_pred CCccCHhhc--CCCCEEECCCCCC
Confidence 588998765 6999999999974
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=2.4e-23 Score=249.97 Aligned_cols=338 Identities=18% Similarity=0.147 Sum_probs=239.5
Q ss_pred cCceEEEEeeeCCC--CCCcccccC-CCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccc-cccc
Q 003037 458 VEKVRHSMLKLGYD--SFPDSIFSA-KKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIV-EIPK 533 (854)
Q Consensus 458 ~~~~r~l~l~~~~~--~~~~~~~~~-~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~-~lP~ 533 (854)
..+++++.+..+.. ..|..+... ++|++|.+.+|. +.+..|..|.++++|++|++++|. +. .+|.
T Consensus 268 l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~---l~~~~p~~~~~l~~L~~L~L~~n~--------l~~~ip~ 336 (768)
T 3rgz_A 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH---FYGAVPPFFGSCSLLESLALSSNN--------FSGELPM 336 (768)
T ss_dssp CTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE---EEECCCGGGGGCTTCCEEECCSSE--------EEEECCH
T ss_pred cCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc---CCCccchHHhcCCCccEEECCCCc--------ccCcCCH
Confidence 45677787777654 355555554 888888888887 555577778888888888888887 54 7776
Q ss_pred c-ccccCCCceeeecCCCCc-ccchhhhcCC-CCcEEeecCccccccccccccc--CCCCcccCceeecCCCCCCccccc
Q 003037 534 E-IKKLIHLRFLKLVWLDIE-ELPETCCELF-NVQTLEVLDCRSFRRLPQGFGK--LVNLRNLSKFIVSRSGGSKLEDLR 608 (854)
Q Consensus 534 ~-i~~L~~L~~L~L~~~~i~-~lP~~i~~L~-~L~~L~l~~~~~l~~lp~~i~~--L~~L~~L~~~~~~~~~~~~l~~L~ 608 (854)
. ++++.+|++|++++|.+. .+|..+.++. +|++|++++|.....+|..+.. +++|++|........ +.....+.
T Consensus 337 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~p~~l~ 415 (768)
T 3rgz_A 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT-GKIPPTLS 415 (768)
T ss_dssp HHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEE-EECCGGGG
T ss_pred HHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccc-cccCHHHh
Confidence 5 788888888888888877 7888888887 8888888888754567776665 677777733211110 11122344
Q ss_pred ccccCCceeEEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCC
Q 003037 609 QLKHLRGSLKIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGW 688 (854)
Q Consensus 609 ~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l 688 (854)
++.+|+ .|.+.+. ......+..+..+++|+.|+++.|. ....++..+..+++|+.|++ .++.....+
T Consensus 416 ~l~~L~-~L~Ls~N----~l~~~~p~~l~~l~~L~~L~L~~n~-------l~~~~p~~~~~l~~L~~L~L-~~N~l~~~~ 482 (768)
T 3rgz_A 416 NCSELV-SLHLSFN----YLSGTIPSSLGSLSKLRDLKLWLNM-------LEGEIPQELMYVKTLETLIL-DFNDLTGEI 482 (768)
T ss_dssp GCTTCC-EEECCSS----EEESCCCGGGGGCTTCCEEECCSSC-------CCSCCCGGGGGCTTCCEEEC-CSSCCCSCC
T ss_pred cCCCCC-EEECcCC----cccCcccHHHhcCCCCCEEECCCCc-------ccCcCCHHHcCCCCceEEEe-cCCcccCcC
Confidence 445454 6665542 2222344567888999999999872 22345566777899999999 666666558
Q ss_pred CchhhcccCccEEEEecccCCCCCCC-CCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCC-------------
Q 003037 689 PSWIVSLNKLKKLVLYQFYLCDTMPP-LGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTS------------- 754 (854)
Q Consensus 689 p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~------------- 754 (854)
|.++..+++|+.|+|++|.+.+.+|. ++.+++|++|+|++|...+.+|..+.....+..+....+.
T Consensus 483 p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~ 562 (768)
T 3rgz_A 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTT
T ss_pred CHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhccc
Confidence 99999999999999999998877775 8899999999999999666788766544433322111000
Q ss_pred ---------------------------------------------------------------ccccCCCccceeecccc
Q 003037 755 ---------------------------------------------------------------SSVIAFPKLKQVLFYNI 771 (854)
Q Consensus 755 ---------------------------------------------------------------~~~~~~~~L~~L~l~~~ 771 (854)
.....+++|+.|+++++
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N 642 (768)
T 3rgz_A 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642 (768)
T ss_dssp TCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS
T ss_pred chhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC
Confidence 01223466777777773
Q ss_pred ccccccccCCCccccCCCccceeeecccccCcCCCcCCCCCCCcCEEEEecCc
Q 003037 772 CHWEEWDFGKGDSITIMPQLKKLEFERCTELKSVPEKLLRSTTLEELSIVECP 824 (854)
Q Consensus 772 ~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 824 (854)
.+....+..++.+++|+.|++++|...+.+|..+..+++|+.|++++|.
T Consensus 643 ----~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 643 ----MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691 (768)
T ss_dssp ----CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred ----cccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCc
Confidence 2333334467789999999999997667899999999999999999885
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=4.7e-23 Score=245.56 Aligned_cols=186 Identities=15% Similarity=0.155 Sum_probs=104.6
Q ss_pred hhhhhcCCCcccEEEecCCCCcccccccccc------------------cccccc--ccCCCceeeecCCC-Ccccchhh
Q 003037 500 LPVLFDQLTCLRTLKITGISGEKRYFRIIVE------------------IPKEIK--KLIHLRFLKLVWLD-IEELPETC 558 (854)
Q Consensus 500 l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~------------------lP~~i~--~L~~L~~L~L~~~~-i~~lP~~i 558 (854)
+|..|.++++|++|+|++|. +.. +|..++ +|.+|++|+|++|. ...+|..+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~--------Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l 511 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSP--------FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL 511 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCC--------CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG
T ss_pred hhHHHhcCCCCCEEECcCCc--------CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH
Confidence 45667777777777777777 554 777766 77777777777776 34677777
Q ss_pred hcCCCCcEEeecCccccc--ccccccccCC-------CCcccCceeecCCCCCCcc---cccccccCCceeEEecccCCC
Q 003037 559 CELFNVQTLEVLDCRSFR--RLPQGFGKLV-------NLRNLSKFIVSRSGGSKLE---DLRQLKHLRGSLKIQGLGNVR 626 (854)
Q Consensus 559 ~~L~~L~~L~l~~~~~l~--~lp~~i~~L~-------~L~~L~~~~~~~~~~~~l~---~L~~L~~L~~~L~i~~l~~~~ 626 (854)
++|++|++|++++|..+. .+|.++++++ +|++|.. ..+....+. .+.++.+|+ .|.+.+..
T Consensus 512 ~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~L---s~N~L~~ip~~~~l~~L~~L~-~L~Ls~N~--- 584 (876)
T 4ecn_A 512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM---GYNNLEEFPASASLQKMVKLG-LLDCVHNK--- 584 (876)
T ss_dssp GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEEC---CSSCCCBCCCHHHHTTCTTCC-EEECTTSC---
T ss_pred hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEe---eCCcCCccCChhhhhcCCCCC-EEECCCCC---
Confidence 777777777777775233 4676665554 5555522 222211222 244444444 55444311
Q ss_pred ChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCC-CCeEEEeccCCCCCCCCchhhccc--CccEEEE
Q 003037 627 DADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPN-IESLRIEYHYIGISGWPSWIVSLN--KLKKLVL 703 (854)
Q Consensus 627 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~lp~~~~~l~--~L~~L~L 703 (854)
+. .++ .+..+++|+.|+++.|. ...+++.+..+++ |+.|+| +++.... +|.++..++ +|+.|+|
T Consensus 585 -l~-~lp-~~~~L~~L~~L~Ls~N~--------l~~lp~~l~~l~~~L~~L~L-s~N~L~~-lp~~~~~~~~~~L~~L~L 651 (876)
T 4ecn_A 585 -VR-HLE-AFGTNVKLTDLKLDYNQ--------IEEIPEDFCAFTDQVEGLGF-SHNKLKY-IPNIFNAKSVYVMGSVDF 651 (876)
T ss_dssp -CC-BCC-CCCTTSEESEEECCSSC--------CSCCCTTSCEECTTCCEEEC-CSSCCCS-CCSCCCTTCSSCEEEEEC
T ss_pred -cc-cch-hhcCCCcceEEECcCCc--------cccchHHHhhccccCCEEEC-cCCCCCc-CchhhhccccCCCCEEEC
Confidence 11 112 45666666777766651 1134444555555 666666 4444333 665554433 3666666
Q ss_pred ecccCCCCCC
Q 003037 704 YQFYLCDTMP 713 (854)
Q Consensus 704 ~~~~~~~~l~ 713 (854)
++|.+.+.+|
T Consensus 652 s~N~l~g~ip 661 (876)
T 4ecn_A 652 SYNKIGSEGR 661 (876)
T ss_dssp CSSCTTTTSS
T ss_pred cCCcCCCccc
Confidence 6665544433
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=2.8e-23 Score=243.59 Aligned_cols=315 Identities=15% Similarity=0.180 Sum_probs=209.4
Q ss_pred cCceEEEEeeeCCC--CCCcccccCCCceEEEEecCCCCcccC-chhhhhcCC------CcccEEEecCCCCcccccccc
Q 003037 458 VEKVRHSMLKLGYD--SFPDSIFSAKKLRSFLIHSTNKDLISP-VLPVLFDQL------TCLRTLKITGISGEKRYFRII 528 (854)
Q Consensus 458 ~~~~r~l~l~~~~~--~~~~~~~~~~~Lr~L~l~~~~~~~~~~-~l~~~~~~l------~~Lr~L~L~~~~~~~~~~~~i 528 (854)
..+++++.+..+.. .+|..+.++++|++|.+.+|.. +.+ .+|..+.++ ++|++|++++|. +
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~--l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~--------l 317 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG--ISGEQLKDDWQALADAPVGEKIQIIYIGYNN--------L 317 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT--SCHHHHHHHHHHHHHSGGGGTCCEEECCSSC--------C
T ss_pred cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC--CccccchHHHHhhhccccCCCCCEEECCCCc--------C
Confidence 45678888887753 3677788888888888888751 222 366666665 888888888888 7
Q ss_pred ccccc--cccccCCCceeeecCCCCc-ccchhhhcCCCCcEEeecCcccccccccccccCCC-CcccCceeecCCCCCCc
Q 003037 529 VEIPK--EIKKLIHLRFLKLVWLDIE-ELPETCCELFNVQTLEVLDCRSFRRLPQGFGKLVN-LRNLSKFIVSRSGGSKL 604 (854)
Q Consensus 529 ~~lP~--~i~~L~~L~~L~L~~~~i~-~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~-L~~L~~~~~~~~~~~~l 604 (854)
..+|. .++++.+|++|++++|.++ .+| .++++++|++|++++|. +..+|..++.+++ |++|........ .+
T Consensus 318 ~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~---~l 392 (636)
T 4eco_A 318 KTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLK---YI 392 (636)
T ss_dssp SSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCS---SC
T ss_pred CccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCcCc---cc
Confidence 78887 7888888888888888888 888 78888888888888887 6788888888887 887733222111 11
Q ss_pred cc-ccc--cccCCceeEEecccCCCChhHHHHhhcc-------CCCCCCcEEEEecCCCCCCCcchHHHhhh-CCCCCCC
Q 003037 605 ED-LRQ--LKHLRGSLKIQGLGNVRDADEAKSAELE-------KKKNLLDLVLSFDGGQRIGDVNDKAIIEA-LQPPPNI 673 (854)
Q Consensus 605 ~~-L~~--L~~L~~~L~i~~l~~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-l~~~~~L 673 (854)
.. +.. +.+|+ .|.+.. +......+..+. .+.+|+.|+++.|.. ..++.. +..+++|
T Consensus 393 p~~~~~~~l~~L~-~L~Ls~----N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l--------~~lp~~~~~~l~~L 459 (636)
T 4eco_A 393 PNIFDAKSVSVMS-AIDFSY----NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI--------SKFPKELFSTGSPL 459 (636)
T ss_dssp CSCCCTTCSSCEE-EEECCS----SCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCC--------CSCCTHHHHTTCCC
T ss_pred chhhhhcccCccC-EEECcC----CcCCCcchhhhcccccccccCCCCCEEECcCCcc--------CcCCHHHHccCCCC
Confidence 11 111 11232 444433 222222233344 556788888877621 122222 2346778
Q ss_pred CeEEEeccCCCCCCCCchhhc--------ccCccEEEEecccCCCCCCC-CC--CCCCCCEEEEcCCCCceEeCccccCC
Q 003037 674 ESLRIEYHYIGISGWPSWIVS--------LNKLKKLVLYQFYLCDTMPP-LG--KLPSLEILEIRGNWNVKRVGDEFLGV 742 (854)
Q Consensus 674 ~~L~l~~~~~~~~~lp~~~~~--------l~~L~~L~L~~~~~~~~l~~-l~--~L~~L~~L~L~~~~~l~~i~~~~~~~ 742 (854)
+.|++ +++.... +|..+.. +++|+.|+|++|.+. .+|. +. .+++|+.|+|++|. +..+|..
T Consensus 460 ~~L~L-s~N~l~~-i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~---- 531 (636)
T 4eco_A 460 SSINL-MGNMLTE-IPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNS-FSKFPTQ---- 531 (636)
T ss_dssp SEEEC-CSSCCSB-CCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSC-CSSCCCG----
T ss_pred CEEEC-CCCCCCC-cCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCC-CCCcChh----
Confidence 88888 5554444 6655432 227888888888766 4443 54 78888888888876 4445544
Q ss_pred CCCCCCccccCCccccCCCccceeecccccc--ccccccCCCccccCCCccceeeecccccCcCCCcCCCCCCCcCEEEE
Q 003037 743 GGGDHLHGISTSSSVIAFPKLKQVLFYNICH--WEEWDFGKGDSITIMPQLKKLEFERCTELKSVPEKLLRSTTLEELSI 820 (854)
Q Consensus 743 ~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~--l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l 820 (854)
...+++|+.|+++++.. -+.+....+..+..+++|++|++++| .++.+|..+. ++|+.|+|
T Consensus 532 --------------~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~L 594 (636)
T 4eco_A 532 --------------PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEKIT--PNISVLDI 594 (636)
T ss_dssp --------------GGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSCCC--TTCCEEEC
T ss_pred --------------hhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC-cCCccCHhHh--CcCCEEEC
Confidence 23689999999976441 13333333446778999999999999 4699998866 89999999
Q ss_pred ecCcc
Q 003037 821 VECPI 825 (854)
Q Consensus 821 ~~c~~ 825 (854)
++||.
T Consensus 595 s~N~l 599 (636)
T 4eco_A 595 KDNPN 599 (636)
T ss_dssp CSCTT
T ss_pred cCCCC
Confidence 99974
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=3.6e-22 Score=234.12 Aligned_cols=123 Identities=20% Similarity=0.210 Sum_probs=104.7
Q ss_pred cCceEEEEeeeCCCC--CCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccc-ccc
Q 003037 458 VEKVRHSMLKLGYDS--FPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEI-PKE 534 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~--~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~l-P~~ 534 (854)
+.+++++.+..+... .+..+.++++|++|.+.+|. +..+.|..|.++++|++|+|++|. +..+ |..
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~i~~~~~~~l~~L~~L~Ls~n~--------l~~~~p~~ 99 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE---IETIEDKAWHGLHHLSNLILTGNP--------IQSFSPGS 99 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC---CCEECTTTTTTCTTCCEEECTTCC--------CCCCCTTS
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc---ccccCHHHhhchhhcCEeECCCCc--------ccccChhh
Confidence 578899999888765 33468889999999999987 666567788999999999999998 7776 788
Q ss_pred ccccCCCceeeecCCCCcccc-hhhhcCCCCcEEeecCccccc--ccccccccCCCCcccC
Q 003037 535 IKKLIHLRFLKLVWLDIEELP-ETCCELFNVQTLEVLDCRSFR--RLPQGFGKLVNLRNLS 592 (854)
Q Consensus 535 i~~L~~L~~L~L~~~~i~~lP-~~i~~L~~L~~L~l~~~~~l~--~lp~~i~~L~~L~~L~ 592 (854)
|+++.+|++|++++|.++.+| ..++++++|++|++++|. +. .+|..++++++|++|.
T Consensus 100 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~ 159 (606)
T 3vq2_A 100 FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVD 159 (606)
T ss_dssp STTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEE
T ss_pred cCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCc-ccceechHhHhhcCCCCEEE
Confidence 999999999999999998877 678999999999999998 55 5788899999999883
No 12
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=2.7e-22 Score=230.57 Aligned_cols=120 Identities=17% Similarity=0.220 Sum_probs=94.9
Q ss_pred cCceEEEEeeeCCCC-C-CcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccc
Q 003037 458 VEKVRHSMLKLGYDS-F-PDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEI 535 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~-~-~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i 535 (854)
+.+++++.+..+... . +..+..+++|++|++.+|. +.+..|..|.++++|++|+|++|. +..+|..
T Consensus 20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~N~--------l~~lp~~- 87 (520)
T 2z7x_B 20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNR---IQYLDISVFKFNQELEYLDLSHNK--------LVKISCH- 87 (520)
T ss_dssp CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC---CCEEEGGGGTTCTTCCEEECCSSC--------CCEEECC-
T ss_pred cccccEEECCCCcccccChhhccccccccEEecCCCc---cCCcChHHhhcccCCCEEecCCCc--------eeecCcc-
Confidence 468888888888765 2 2467888899999998887 666567788889999999999988 7888876
Q ss_pred cccCCCceeeecCCCCcc--cchhhhcCCCCcEEeecCcccccccccccccCCCC--cccCc
Q 003037 536 KKLIHLRFLKLVWLDIEE--LPETCCELFNVQTLEVLDCRSFRRLPQGFGKLVNL--RNLSK 593 (854)
Q Consensus 536 ~~L~~L~~L~L~~~~i~~--lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L--~~L~~ 593 (854)
.+.+|++|+|++|.++. +|..++++++|++|++++|. +.. ..+..+++| ++|..
T Consensus 88 -~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l 145 (520)
T 2z7x_B 88 -PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLL 145 (520)
T ss_dssp -CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEE
T ss_pred -ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEe
Confidence 78899999999998875 56888899999999998887 544 346677777 66643
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.88 E-value=4.2e-23 Score=242.07 Aligned_cols=302 Identities=14% Similarity=0.195 Sum_probs=174.6
Q ss_pred CCcccc--cCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccc-ccccccccc------CCCce
Q 003037 473 FPDSIF--SAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIV-EIPKEIKKL------IHLRF 543 (854)
Q Consensus 473 ~~~~~~--~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~-~lP~~i~~L------~~L~~ 543 (854)
+|..+. ++++|++|.+.+|. +.+.+|..+.++++|++|++++|... -. .+|..++++ .+|++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~---l~~~~p~~l~~l~~L~~L~Ls~n~~l------~~~~lp~~~~~L~~~~~l~~L~~ 309 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCP---NLTKLPTFLKALPEMQLINVACNRGI------SGEQLKDDWQALADAPVGEKIQI 309 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCT---TCSSCCTTTTTCSSCCEEECTTCTTS------CHHHHHHHHHHHHHSGGGGTCCE
T ss_pred CchhhhhcccCCCCEEEecCCc---CCccChHHHhcCCCCCEEECcCCCCC------ccccchHHHHhhhccccCCCCCE
Confidence 455555 66667777776665 44445666666777777777766510 22 466666665 66777
Q ss_pred eeecCCCCcccch--hhhcCCCCcEEeecCccccc-ccccccccCCCCcccCceeecCCCCCCccccccccc-CCceeEE
Q 003037 544 LKLVWLDIEELPE--TCCELFNVQTLEVLDCRSFR-RLPQGFGKLVNLRNLSKFIVSRSGGSKLEDLRQLKH-LRGSLKI 619 (854)
Q Consensus 544 L~L~~~~i~~lP~--~i~~L~~L~~L~l~~~~~l~-~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~-L~~~L~i 619 (854)
|++++|.++.+|. .++++++|++|++++|. +. .+| .++.+++|++|........ .....+..+.+ |+ .|.+
T Consensus 310 L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip-~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~-~L~L 384 (636)
T 4eco_A 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ-LEGKLP-AFGSEIKLASLNLAYNQIT--EIPANFCGFTEQVE-NLSF 384 (636)
T ss_dssp EECCSSCCSSCCCHHHHTTCTTCCEEECCSCC-CEEECC-CCEEEEEESEEECCSSEEE--ECCTTSEEECTTCC-EEEC
T ss_pred EECCCCcCCccCchhhhccCCCCCEEeCcCCc-Cccchh-hhCCCCCCCEEECCCCccc--cccHhhhhhcccCc-EEEc
Confidence 7777776666666 66677777777777666 44 666 5666666666622111100 00011223333 33 4444
Q ss_pred ecccCCCChhHHHHhhccCC--CCCCcEEEEecCCCCCCCcchHHHhhhCC-------CCCCCCeEEEeccCCCCCCCCc
Q 003037 620 QGLGNVRDADEAKSAELEKK--KNLLDLVLSFDGGQRIGDVNDKAIIEALQ-------PPPNIESLRIEYHYIGISGWPS 690 (854)
Q Consensus 620 ~~l~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~lp~ 690 (854)
.+.. .. ..+..+..+ ++|+.|+++.|. .....+..+. .+++|+.|++ +++.... +|.
T Consensus 385 s~N~----l~-~lp~~~~~~~l~~L~~L~Ls~N~-------l~~~~p~~l~~~~~~~~~~~~L~~L~L-s~N~l~~-lp~ 450 (636)
T 4eco_A 385 AHNK----LK-YIPNIFDAKSVSVMSAIDFSYNE-------IGSVDGKNFDPLDPTPFKGINVSSINL-SNNQISK-FPK 450 (636)
T ss_dssp CSSC----CS-SCCSCCCTTCSSCEEEEECCSSC-------TTTTTTCSSCTTCSSCCCCCCEEEEEC-CSSCCCS-CCT
T ss_pred cCCc----Cc-ccchhhhhcccCccCEEECcCCc-------CCCcchhhhcccccccccCCCCCEEEC-cCCccCc-CCH
Confidence 3311 11 112223332 256666666651 1122223333 4456777777 4444443 665
Q ss_pred hhh-cccCccEEEEecccCCCCCCC-C-C-------CCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCC
Q 003037 691 WIV-SLNKLKKLVLYQFYLCDTMPP-L-G-------KLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAF 760 (854)
Q Consensus 691 ~~~-~l~~L~~L~L~~~~~~~~l~~-l-~-------~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~ 760 (854)
.+. .+++|+.|+|++|.+. .+|. . . .+++|+.|+|++|. +..+|..+. ...+
T Consensus 451 ~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~----------------~~~l 512 (636)
T 4eco_A 451 ELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFR----------------ATTL 512 (636)
T ss_dssp HHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGGS----------------TTTC
T ss_pred HHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCc-CCccChhhh----------------hccC
Confidence 543 4677777777777665 3332 2 1 12277777777765 445554322 0268
Q ss_pred CccceeeccccccccccccCCCccccCCCccceeeec------ccccCcCCCcCCCCCCCcCEEEEecCcc
Q 003037 761 PKLKQVLFYNICHWEEWDFGKGDSITIMPQLKKLEFE------RCTELKSVPEKLLRSTTLEELSIVECPI 825 (854)
Q Consensus 761 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~------~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 825 (854)
++|+.|+++++ .+..++ ..+..+++|+.|+++ +|...+.+|..+..+++|++|++++|.-
T Consensus 513 ~~L~~L~Ls~N-~l~~ip----~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 513 PYLVGIDLSYN-SFSKFP----TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp TTCCEEECCSS-CCSSCC----CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred CCcCEEECCCC-CCCCcC----hhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 89999999984 444443 256689999999995 4555677899999999999999999864
No 14
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=4.2e-22 Score=226.25 Aligned_cols=294 Identities=17% Similarity=0.167 Sum_probs=192.0
Q ss_pred CCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccc-cccccccCCCceeeecCCCCcccchh-h
Q 003037 481 KKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEI-PKEIKKLIHLRFLKLVWLDIEELPET-C 558 (854)
Q Consensus 481 ~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~l-P~~i~~L~~L~~L~L~~~~i~~lP~~-i 558 (854)
+++++|++.++. +....+..|.++++|++|+|++|. +..+ |..++++.+|++|+|++|.++.+|.. +
T Consensus 32 ~~l~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~--------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 100 (477)
T 2id5_A 32 TETRLLDLGKNR---IKTLNQDEFASFPHLEELELNENI--------VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVF 100 (477)
T ss_dssp TTCSEEECCSSC---CCEECTTTTTTCTTCCEEECTTSC--------CCEECTTTTTTCTTCCEEECCSSCCCSCCTTSS
T ss_pred CCCcEEECCCCc---cceECHhHccCCCCCCEEECCCCc--------cCEeChhhhhCCccCCEEECCCCcCCccCcccc
Confidence 467777777776 444445567777777777777776 5554 56677777777777777777777654 5
Q ss_pred hcCCCCcEEeecCccccccc-ccccccCCCCcccCceeecCCCCCCcccccccccCCceeEEecccCCCChhHHHHhhcc
Q 003037 559 CELFNVQTLEVLDCRSFRRL-PQGFGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLGNVRDADEAKSAELE 637 (854)
Q Consensus 559 ~~L~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~ 637 (854)
.++++|++|++++|. +..+ |..+..+++|++|........ ......+..+.+|+ .|.+.+. .........+.
T Consensus 101 ~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~-~L~l~~n----~l~~~~~~~l~ 173 (477)
T 2id5_A 101 TGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLE-QLTLEKC----NLTSIPTEALS 173 (477)
T ss_dssp TTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEECCTTCC-EECTTSSTTCTTCC-EEEEESC----CCSSCCHHHHT
T ss_pred cCCCCCCEEECCCCc-cccCChhHccccccCCEEECCCCccc-eeChhhccCCCCCC-EEECCCC----cCcccChhHhc
Confidence 677777777777776 4433 445666677766632211110 01111233334444 5555542 11222234567
Q ss_pred CCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCchhhcccCccEEEEecccCCCCCC--CC
Q 003037 638 KKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCDTMP--PL 715 (854)
Q Consensus 638 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~--~l 715 (854)
.+++|+.|+++.+.. .......+..+++|+.|++ .++.....+|.......+|+.|+|++|.+.. +| .+
T Consensus 174 ~l~~L~~L~l~~n~i-------~~~~~~~~~~l~~L~~L~l-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~ 244 (477)
T 2id5_A 174 HLHGLIVLRLRHLNI-------NAIRDYSFKRLYRLKVLEI-SHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VPYLAV 244 (477)
T ss_dssp TCTTCCEEEEESCCC-------CEECTTCSCSCTTCCEEEE-ECCTTCCEECTTTTTTCCCSEEEEESSCCCS-CCHHHH
T ss_pred ccCCCcEEeCCCCcC-------cEeChhhcccCcccceeeC-CCCccccccCcccccCccccEEECcCCcccc-cCHHHh
Confidence 888999999988721 1112235667889999999 5544444366666666789999999997654 44 37
Q ss_pred CCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCCCccceeeccccccccccccCCCccccCCCccceee
Q 003037 716 GKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLKQVLFYNICHWEEWDFGKGDSITIMPQLKKLE 795 (854)
Q Consensus 716 ~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~ 795 (854)
+.+++|+.|+|++|. +..++...+ ..+++|+.|.+.++ .+..+ .+..+..+++|+.|+
T Consensus 245 ~~l~~L~~L~Ls~n~-l~~~~~~~~-----------------~~l~~L~~L~L~~n-~l~~~---~~~~~~~l~~L~~L~ 302 (477)
T 2id5_A 245 RHLVYLRFLNLSYNP-ISTIEGSML-----------------HELLRLQEIQLVGG-QLAVV---EPYAFRGLNYLRVLN 302 (477)
T ss_dssp TTCTTCCEEECCSSC-CCEECTTSC-----------------TTCTTCCEEECCSS-CCSEE---CTTTBTTCTTCCEEE
T ss_pred cCccccCeeECCCCc-CCccChhhc-----------------cccccCCEEECCCC-ccceE---CHHHhcCcccCCEEE
Confidence 889999999999887 566655332 36789999999883 33333 233566789999999
Q ss_pred ecccccCcCCCc-CCCCCCCcCEEEEecCc
Q 003037 796 FERCTELKSVPE-KLLRSTTLEELSIVECP 824 (854)
Q Consensus 796 l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~ 824 (854)
|++| .+..+|. .+..+++|++|+++++|
T Consensus 303 L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 303 VSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred CCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 9988 6777765 46778999999998876
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=2.9e-22 Score=234.94 Aligned_cols=340 Identities=12% Similarity=0.019 Sum_probs=190.4
Q ss_pred cCceEEEEeeeCCCC--CCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccc-ccc
Q 003037 458 VEKVRHSMLKLGYDS--FPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEI-PKE 534 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~--~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~l-P~~ 534 (854)
+..++++.+.++... .+..+.++++|++|.+.+|. +....|..|.++++|++|+|++|. +..+ |..
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls~n~--------l~~~~~~~ 100 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ---IYWIHEDTFQSQHRLDTLVLTANP--------LIFMAETA 100 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCC---CCEECTTTTTTCTTCCEEECTTCC--------CSEECTTT
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCCc---cceeChhhccCccccCeeeCCCCc--------ccccChhh
Confidence 567888888888765 35577888889999988887 555567778888888888888888 5554 667
Q ss_pred ccccCCCceeeecCCCCccc-chhhhcCCCCcEEeecCccccccc--ccccccCCCCcccCceeecCCC--CCCcccccc
Q 003037 535 IKKLIHLRFLKLVWLDIEEL-PETCCELFNVQTLEVLDCRSFRRL--PQGFGKLVNLRNLSKFIVSRSG--GSKLEDLRQ 609 (854)
Q Consensus 535 i~~L~~L~~L~L~~~~i~~l-P~~i~~L~~L~~L~l~~~~~l~~l--p~~i~~L~~L~~L~~~~~~~~~--~~~l~~L~~ 609 (854)
++++.+|++|++++|.++.+ |..++++++|++|++++|. +..+ |. +..+++|++|......... ...+..+.+
T Consensus 101 ~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 178 (606)
T 3t6q_A 101 LSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPK-GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ 178 (606)
T ss_dssp TSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCT-TCCCTTCCEEECCSSCCCEECHHHHHTTTT
T ss_pred hcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCccc-ccCCcccCEEEcccCcccccChhhhhhhcc
Confidence 88888888888888888876 5667888888888888877 5554 33 3346677666221111000 000111111
Q ss_pred cccCCc---------------------eeEEe------------------------------------------------
Q 003037 610 LKHLRG---------------------SLKIQ------------------------------------------------ 620 (854)
Q Consensus 610 L~~L~~---------------------~L~i~------------------------------------------------ 620 (854)
|+.+.. .+.+.
T Consensus 179 L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~ 258 (606)
T 3t6q_A 179 ATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES 258 (606)
T ss_dssp CCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEE
T ss_pred cceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeE
Confidence 110000 00000
Q ss_pred -cccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCchhhcccCcc
Q 003037 621 -GLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWIVSLNKLK 699 (854)
Q Consensus 621 -~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~L~ 699 (854)
.+.+ ..........+..+++|+.|+++++ ....+++.+..+++|+.|++ .++......|..+..+++|+
T Consensus 259 L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n--------~l~~lp~~l~~l~~L~~L~l-~~n~l~~~~~~~~~~l~~L~ 328 (606)
T 3t6q_A 259 INLQK-HYFFNISSNTFHCFSGLQELDLTAT--------HLSELPSGLVGLSTLKKLVL-SANKFENLCQISASNFPSLT 328 (606)
T ss_dssp EECTT-CCCSSCCTTTTTTCTTCSEEECTTS--------CCSCCCSSCCSCTTCCEEEC-TTCCCSBGGGGCGGGCTTCS
T ss_pred EEeec-CccCccCHHHhccccCCCEEeccCC--------ccCCCChhhcccccCCEEEC-ccCCcCcCchhhhhccCcCC
Confidence 0000 0011111223556677777777766 12234555666777777777 55444332355566777777
Q ss_pred EEEEecccCCCCCCC--CCCCCCCCEEEEcCCCCceEeC---ccccCCCCCCCCccccC------CccccCCCccceeec
Q 003037 700 KLVLYQFYLCDTMPP--LGKLPSLEILEIRGNWNVKRVG---DEFLGVGGGDHLHGIST------SSSVIAFPKLKQVLF 768 (854)
Q Consensus 700 ~L~L~~~~~~~~l~~--l~~L~~L~~L~L~~~~~l~~i~---~~~~~~~~~~~l~~~~~------~~~~~~~~~L~~L~l 768 (854)
.|++++|.....++. ++.+++|++|++++|. +..++ ..+.....+..+....+ ......+++|+.|++
T Consensus 329 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 407 (606)
T 3t6q_A 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL 407 (606)
T ss_dssp EEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEEC
T ss_pred EEECCCCCcccccchhhhhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEEC
Confidence 777777766544443 6667777777777766 33332 22222222222211111 112334566666666
Q ss_pred cccccccccccCCCccccCCCccceeeecccccCcCCCcCCCCCCCcCEEEEecCc
Q 003037 769 YNICHWEEWDFGKGDSITIMPQLKKLEFERCTELKSVPEKLLRSTTLEELSIVECP 824 (854)
Q Consensus 769 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 824 (854)
.++. +.... .+..+..+++|+.|++++|......|..+..+++|++|++++|+
T Consensus 408 ~~n~-l~~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 408 AFTR-LKVKD--AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp TTCC-EECCT--TCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred CCCc-CCCcc--cchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence 6532 11111 01123456666666666664333345555666666666666664
No 16
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.88 E-value=2.8e-22 Score=235.11 Aligned_cols=119 Identities=17% Similarity=0.167 Sum_probs=90.3
Q ss_pred cCceEEEEeeeCCCC--CCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccccc-cc
Q 003037 458 VEKVRHSMLKLGYDS--FPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIP-KE 534 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~--~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP-~~ 534 (854)
..+++++.+..+... .+..+.++++|++|.+.+|. +....|..|.++++|++|+|++|. +..+| ..
T Consensus 55 l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~---l~~~~p~~~~~l~~L~~L~L~~n~--------l~~~~~~~ 123 (606)
T 3vq2_A 55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP---IQSFSPGSFSGLTSLENLVAVETK--------LASLESFP 123 (606)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC---CCCCCTTSSTTCTTCCEEECTTSC--------CCCSSSSC
T ss_pred CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc---ccccChhhcCCcccCCEEEccCCc--------cccccccc
Confidence 467888888877655 34567788889999998887 566567778889999999999888 76665 67
Q ss_pred ccccCCCceeeecCCCCc--ccchhhhcCCCCcEEeecCccccccc-ccccccCCCC
Q 003037 535 IKKLIHLRFLKLVWLDIE--ELPETCCELFNVQTLEVLDCRSFRRL-PQGFGKLVNL 588 (854)
Q Consensus 535 i~~L~~L~~L~L~~~~i~--~lP~~i~~L~~L~~L~l~~~~~l~~l-p~~i~~L~~L 588 (854)
++++.+|++|++++|.+. .+|..++++++|++|++++|. +..+ |..++.+++|
T Consensus 124 ~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L 179 (606)
T 3vq2_A 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLREN 179 (606)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHHHC
T ss_pred cCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhhhhhhcc
Confidence 888888888888888887 478888888888888888887 4444 3334444433
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=2.8e-22 Score=226.41 Aligned_cols=323 Identities=18% Similarity=0.200 Sum_probs=217.8
Q ss_pred ccCceEEEEeeeCCCC--CCcccccCCCceEEEEecCCCCccc-CchhhhhcCCCcccEEEecCCCCccccccccccc-c
Q 003037 457 SVEKVRHSMLKLGYDS--FPDSIFSAKKLRSFLIHSTNKDLIS-PVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEI-P 532 (854)
Q Consensus 457 ~~~~~r~l~l~~~~~~--~~~~~~~~~~Lr~L~l~~~~~~~~~-~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~l-P 532 (854)
.+.+++++.+..+... .+..+.++++|++|.+.++. +. .+.+..|.++++|++|+|++|. +..+ |
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~---~~~~i~~~~~~~l~~L~~L~Ls~n~--------l~~~~~ 96 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQT---PGLVIRNNTFRGLSSLIILKLDYNQ--------FLQLET 96 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCS---TTCEECTTTTTTCTTCCEEECTTCT--------TCEECT
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCc---ccceECcccccccccCCEEeCCCCc--------cCccCh
Confidence 4678999999988766 46778999999999999987 33 3346678999999999999999 6665 7
Q ss_pred ccccccCCCceeeecCCCCcc-cchh--hhcCCCCcEEeecCccccccc-ccc-cccCCCCcccCceeecCCCCCCcccc
Q 003037 533 KEIKKLIHLRFLKLVWLDIEE-LPET--CCELFNVQTLEVLDCRSFRRL-PQG-FGKLVNLRNLSKFIVSRSGGSKLEDL 607 (854)
Q Consensus 533 ~~i~~L~~L~~L~L~~~~i~~-lP~~--i~~L~~L~~L~l~~~~~l~~l-p~~-i~~L~~L~~L~~~~~~~~~~~~l~~L 607 (854)
..++++.+|++|+|++|.++. +|.. +.++++|++|++++|. +..+ |.. ++.+++|++|......... .....+
T Consensus 97 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l 174 (455)
T 3v47_A 97 GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKS-ICEEDL 174 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSC-CCTTTS
T ss_pred hhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccc-cChhhh
Confidence 889999999999999999985 4555 8999999999999998 6666 555 7889999988432221111 111112
Q ss_pred ccc--ccCCceeEEecccC--CCC--hhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhh---------------
Q 003037 608 RQL--KHLRGSLKIQGLGN--VRD--ADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEA--------------- 666 (854)
Q Consensus 608 ~~L--~~L~~~L~i~~l~~--~~~--~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~--------------- 666 (854)
..+ ..|. .+.+....- +.. ........+..+++|+.|+++++.. ....+..
T Consensus 175 ~~l~~~~L~-~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l-------~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 175 LNFQGKHFT-LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF-------KESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp GGGTTCEEE-EEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCC-------CHHHHHHHHHHTTTCCEEEEEC
T ss_pred hcccccccc-ccccccCcccccchhhccccccccccccceeeeEecCCCcc-------cccchhhhhccccccceeeEee
Confidence 222 1111 222221110 000 0011111223345566666655410 0111100
Q ss_pred ----------------------C--CCCCCCCeEEEeccCCCCCCCCchhhcccCccEEEEecccCCCCCC-CCCCCCCC
Q 003037 667 ----------------------L--QPPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCDTMP-PLGKLPSL 721 (854)
Q Consensus 667 ----------------------l--~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~-~l~~L~~L 721 (854)
+ ...++|+.|++ .++......|.++..+++|+.|+|++|.+....| .++.+++|
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 325 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDL-SKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL 325 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEEC-CSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEe-cCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccC
Confidence 0 01357888888 5554444367778888899999998888776555 47888899
Q ss_pred CEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCCCccceeeccccccccccccCCCccccCCCccceeeeccccc
Q 003037 722 EILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLKQVLFYNICHWEEWDFGKGDSITIMPQLKKLEFERCTE 801 (854)
Q Consensus 722 ~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~ 801 (854)
+.|+|++|. +..++...+ ..+++|+.|+++++ .+..+ .+..+..+++|++|++++| .
T Consensus 326 ~~L~Ls~N~-l~~~~~~~~-----------------~~l~~L~~L~Ls~N-~l~~~---~~~~~~~l~~L~~L~L~~N-~ 382 (455)
T 3v47_A 326 LKLNLSQNF-LGSIDSRMF-----------------ENLDKLEVLDLSYN-HIRAL---GDQSFLGLPNLKELALDTN-Q 382 (455)
T ss_dssp CEEECCSSC-CCEECGGGG-----------------TTCTTCCEEECCSS-CCCEE---CTTTTTTCTTCCEEECCSS-C
T ss_pred CEEECCCCc-cCCcChhHh-----------------cCcccCCEEECCCC-ccccc---ChhhccccccccEEECCCC-c
Confidence 999998886 555544322 36899999999984 33433 2235668999999999998 5
Q ss_pred CcCCCc-CCCCCCCcCEEEEecCc
Q 003037 802 LKSVPE-KLLRSTTLEELSIVECP 824 (854)
Q Consensus 802 l~~lp~-~l~~l~~L~~L~l~~c~ 824 (854)
+..+|. .+..+++|++|++++||
T Consensus 383 l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 383 LKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccCCHhHhccCCcccEEEccCCC
Confidence 777775 45789999999998775
No 18
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=6.6e-22 Score=229.28 Aligned_cols=342 Identities=19% Similarity=0.130 Sum_probs=193.3
Q ss_pred cCceEEEEeeeCCCC-C-CcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccc
Q 003037 458 VEKVRHSMLKLGYDS-F-PDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEI 535 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~-~-~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i 535 (854)
+.+++++.+..+... . +..+..+++|++|.+.+|. +....|..|.++++|++|+|++|. +..+|..
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls~N~--------l~~lp~~- 118 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR---IRSLDFHVFLFNQDLEYLDVSHNR--------LQNISCC- 118 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC---CCEECTTTTTTCTTCCEEECTTSC--------CCEECSC-
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCC---CCcCCHHHhCCCCCCCEEECCCCc--------CCccCcc-
Confidence 467777777777654 2 2466777778888887776 555556667777888888888777 7777766
Q ss_pred cccCCCceeeecCCCCcccc--hhhhcCCCCcEEeecCcccccccccccccCCCC--cccCceeecCC-CCCCcccccc-
Q 003037 536 KKLIHLRFLKLVWLDIEELP--ETCCELFNVQTLEVLDCRSFRRLPQGFGKLVNL--RNLSKFIVSRS-GGSKLEDLRQ- 609 (854)
Q Consensus 536 ~~L~~L~~L~L~~~~i~~lP--~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L--~~L~~~~~~~~-~~~~l~~L~~- 609 (854)
.+.+|++|++++|.++.+| ..++++++|++|++++|. +.. ..+..+++| ++|........ .......+..
T Consensus 119 -~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l 194 (562)
T 3a79_B 119 -PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIP 194 (562)
T ss_dssp -CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEEC
T ss_pred -ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-ccc--CchhhhhhceeeEEEeecccccccccCccccccc
Confidence 6778888888888777654 677778888888887776 443 234555555 55532221110 1111111221
Q ss_pred -------------------------cccCCceeEEecccC-CCChh---------------------------HHHHhhc
Q 003037 610 -------------------------LKHLRGSLKIQGLGN-VRDAD---------------------------EAKSAEL 636 (854)
Q Consensus 610 -------------------------L~~L~~~L~i~~l~~-~~~~~---------------------------~~~~~~l 636 (854)
+.+|+ .+.+..-.. ..... ......
T Consensus 195 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~- 272 (562)
T 3a79_B 195 NTTVLHLVFHPNSLFSVQVNMSVNALGHLQ-LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF- 272 (562)
T ss_dssp CEEEEEEEECSSSCCCCCCEEEESSEEEEE-EEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-
T ss_pred CcceEEEEecCccchhhhhhhcccccceEE-EecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh-
Confidence 11111 222221000 00000 000000
Q ss_pred cCCCCCCcEEEEecCCC-CCCCcc-----------------------hHHHhhh----------------------CCCC
Q 003037 637 EKKKNLLDLVLSFDGGQ-RIGDVN-----------------------DKAIIEA----------------------LQPP 670 (854)
Q Consensus 637 ~~~~~L~~L~l~~~~~~-~~~~~~-----------------------~~~~~~~----------------------l~~~ 670 (854)
...++|+.|+++.+... ...... ....+.. ...+
T Consensus 273 ~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l 352 (562)
T 3a79_B 273 FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSP 352 (562)
T ss_dssp HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSC
T ss_pred hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCC
Confidence 11235666666655211 000000 0000000 0456
Q ss_pred CCCCeEEEeccCCCCCCCCchhhcccCccEEEEecccCCCC--CC-CCCCCCCCCEEEEcCCCCceEeCcccc-CCCCCC
Q 003037 671 PNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCDT--MP-PLGKLPSLEILEIRGNWNVKRVGDEFL-GVGGGD 746 (854)
Q Consensus 671 ~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~--l~-~l~~L~~L~~L~L~~~~~l~~i~~~~~-~~~~~~ 746 (854)
++|+.|++ +++......|.++..+++|+.|+|++|.+... +| .++.+++|+.|++++|.....++...+ ....+.
T Consensus 353 ~~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~ 431 (562)
T 3a79_B 353 SSFTFLNF-TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431 (562)
T ss_dssp CCCCEEEC-CSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC
T ss_pred CCceEEEC-CCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC
Confidence 77888888 55544443677777888888888888866542 22 367788888888888873322555422 112222
Q ss_pred CCccccCCc---cccCC-CccceeeccccccccccccCCCccccCCCccceeeecccccCcCCCcC-CCCCCCcCEEEEe
Q 003037 747 HLHGISTSS---SVIAF-PKLKQVLFYNICHWEEWDFGKGDSITIMPQLKKLEFERCTELKSVPEK-LLRSTTLEELSIV 821 (854)
Q Consensus 747 ~l~~~~~~~---~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~ 821 (854)
.+....+.. ....+ ++|+.|+++++ .+..++. .+..+++|+.|++++| .+..+|.. +..+++|+.|+++
T Consensus 432 ~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~----~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~ 505 (562)
T 3a79_B 432 VLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPK----DVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLH 505 (562)
T ss_dssp EEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCT----TTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECC
T ss_pred EEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccCh----hhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEec
Confidence 222111111 11123 57888888874 5555543 3347889999999988 57788877 8888999999998
Q ss_pred cCc
Q 003037 822 ECP 824 (854)
Q Consensus 822 ~c~ 824 (854)
++|
T Consensus 506 ~N~ 508 (562)
T 3a79_B 506 DNP 508 (562)
T ss_dssp SCC
T ss_pred CCC
Confidence 876
No 19
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=7.3e-22 Score=217.96 Aligned_cols=302 Identities=16% Similarity=0.139 Sum_probs=224.0
Q ss_pred cCceEEEEeeeCCCC-CCcc-cccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccccc-cc
Q 003037 458 VEKVRHSMLKLGYDS-FPDS-IFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIP-KE 534 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~-~~~~-~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP-~~ 534 (854)
..++|++.+..+... +|.. +..+++|++|.+.++. +....+..|..+++|++|+|++|. +..+| ..
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~--------l~~~~~~~ 112 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ---IEEIDTYAFAYAHTIQKLYMGFNA--------IRYLPPHV 112 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC---CCEECTTTTTTCTTCCEEECCSSC--------CCCCCTTT
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCc---ccccChhhccCCCCcCEEECCCCC--------CCcCCHHH
Confidence 467889999887765 4443 5778999999999987 555556678999999999999998 77765 55
Q ss_pred ccccCCCceeeecCCCCcccchhh-hcCCCCcEEeecCccccccccc-ccccCCCCcccCceeecCCCCCCccccccccc
Q 003037 535 IKKLIHLRFLKLVWLDIEELPETC-CELFNVQTLEVLDCRSFRRLPQ-GFGKLVNLRNLSKFIVSRSGGSKLEDLRQLKH 612 (854)
Q Consensus 535 i~~L~~L~~L~L~~~~i~~lP~~i-~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~ 612 (854)
++++++|++|++++|.++.+|..+ .++++|++|++++|. +..++. .++.+++|++|....... ....+ ..+..
T Consensus 113 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~---~~l~~ 187 (390)
T 3o6n_A 113 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRL-THVDL---SLIPS 187 (390)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCC-SBCCG---GGCTT
T ss_pred hcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcC-Ccccc---ccccc
Confidence 899999999999999999999874 889999999999998 666654 578888888884322211 11222 33333
Q ss_pred CCceeEEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCchh
Q 003037 613 LRGSLKIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWI 692 (854)
Q Consensus 613 L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~ 692 (854)
|+ .+.+.+. .. ..+....+|+.|+++.+. ...++. ..+++|+.|++ .++.... . .++
T Consensus 188 L~-~L~l~~n----~l-----~~~~~~~~L~~L~l~~n~--------l~~~~~--~~~~~L~~L~l-~~n~l~~-~-~~l 244 (390)
T 3o6n_A 188 LF-HANVSYN----LL-----STLAIPIAVEELDASHNS--------INVVRG--PVNVELTILKL-QHNNLTD-T-AWL 244 (390)
T ss_dssp CS-EEECCSS----CC-----SEEECCSSCSEEECCSSC--------CCEEEC--CCCSSCCEEEC-CSSCCCC-C-GGG
T ss_pred cc-eeecccc----cc-----cccCCCCcceEEECCCCe--------eeeccc--cccccccEEEC-CCCCCcc-c-HHH
Confidence 43 5544431 11 123455689999998872 111111 23478999999 6665544 3 578
Q ss_pred hcccCccEEEEecccCCCCCCC-CCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCCCccceeecccc
Q 003037 693 VSLNKLKKLVLYQFYLCDTMPP-LGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLKQVLFYNI 771 (854)
Q Consensus 693 ~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 771 (854)
..+++|+.|+|++|.+....|. ++.+++|+.|+|++|. +..++..+ ..+|+|+.|+++++
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~------------------~~l~~L~~L~L~~n 305 (390)
T 3o6n_A 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYG------------------QPIPTLKVLDLSHN 305 (390)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECSS------------------SCCTTCCEEECCSS
T ss_pred cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCccc------------------CCCCCCCEEECCCC
Confidence 8999999999999988766554 8899999999999987 66665432 36899999999995
Q ss_pred ccccccccCCCccccCCCccceeeecccccCcCCCcCCCCCCCcCEEEEecCcc
Q 003037 772 CHWEEWDFGKGDSITIMPQLKKLEFERCTELKSVPEKLLRSTTLEELSIVECPI 825 (854)
Q Consensus 772 ~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 825 (854)
.+..++. .+..+++|++|++++| .+..+| +..+++|++|+++++|-
T Consensus 306 -~l~~~~~----~~~~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 306 -HLLHVER----NQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp -CCCCCGG----GHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSCE
T ss_pred -cceecCc----cccccCcCCEEECCCC-ccceeC--chhhccCCEEEcCCCCc
Confidence 4554443 3557899999999999 577776 67789999999999873
No 20
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=1.4e-21 Score=220.98 Aligned_cols=324 Identities=20% Similarity=0.212 Sum_probs=170.6
Q ss_pred cCceEEEEeeeCCCCCCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccc
Q 003037 458 VEKVRHSMLKLGYDSFPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKK 537 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~ 537 (854)
..+++.+.+..+.....+.+..+++|++|++.+|. +... +. +.++++|++|++++|. +..+|. +++
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~---l~~~-~~-~~~l~~L~~L~l~~n~--------l~~~~~-~~~ 110 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ---LTDI-TP-LKNLTKLVDILMNNNQ--------IADITP-LAN 110 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSC---CCCC-GG-GTTCTTCCEEECCSSC--------CCCCGG-GTT
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCCc---cCCc-hh-hhccccCCEEECCCCc--------cccChh-hcC
Confidence 34677777776665544556777888888888776 4443 33 7788888888888887 677766 788
Q ss_pred cCCCceeeecCCCCcccchhhhcCCCCcEEeecCcccccccccccccCCCCcccCceeecCCCCCCcccccccccCCcee
Q 003037 538 LIHLRFLKLVWLDIEELPETCCELFNVQTLEVLDCRSFRRLPQGFGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSL 617 (854)
Q Consensus 538 L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L 617 (854)
+++|++|++++|.++.+|. +.++++|++|++++|. +..+|. ++.+++|++|... .... .+..+.++.+|+ .|
T Consensus 111 l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~-~~~~---~~~~~~~l~~L~-~L 182 (466)
T 1o6v_A 111 LTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNT-ISDISA-LSGLTSLQQLSFG-NQVT---DLKPLANLTTLE-RL 182 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG-GTTCTTCSEEEEE-ESCC---CCGGGTTCTTCC-EE
T ss_pred CCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCc-cCCChh-hccCCcccEeecC-Cccc---CchhhccCCCCC-EE
Confidence 8888888888888887775 7788888888888877 666653 6677777766431 1111 111233333333 44
Q ss_pred EEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCC--------------cchHHHhhhCCCCCCCCeEEEeccCC
Q 003037 618 KIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGD--------------VNDKAIIEALQPPPNIESLRIEYHYI 683 (854)
Q Consensus 618 ~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~l~~~~~L~~L~l~~~~~ 683 (854)
.+.+.. +... ..+..+++|+.|+++.+....... ..... .+.+..+++|+.|++ .++.
T Consensus 183 ~l~~n~-l~~~-----~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l-~~n~ 254 (466)
T 1o6v_A 183 DISSNK-VSDI-----SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD-IGTLASLTNLTDLDL-ANNQ 254 (466)
T ss_dssp ECCSSC-CCCC-----GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC-CGGGGGCTTCSEEEC-CSSC
T ss_pred ECcCCc-CCCC-----hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCccc-chhhhcCCCCCEEEC-CCCc
Confidence 433311 1111 123344444444444431000000 00000 112333445555555 3333
Q ss_pred CCCCCCchhhcccCccEEEEecccCCCCCCCCCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccC----CccccC
Q 003037 684 GISGWPSWIVSLNKLKKLVLYQFYLCDTMPPLGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGIST----SSSVIA 759 (854)
Q Consensus 684 ~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~----~~~~~~ 759 (854)
... ++. +..+++|+.|++++|.+.... .++.+++|+.|++++|. +..++. +.....++.+....+ ......
T Consensus 255 l~~-~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~ 329 (466)
T 1o6v_A 255 ISN-LAP-LSGLTKLTELKLGANQISNIS-PLAGLTALTNLELNENQ-LEDISP-ISNLKNLTYLTLYFNNISDISPVSS 329 (466)
T ss_dssp CCC-CGG-GTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSC-CSCCGG-GGGCTTCSEEECCSSCCSCCGGGGG
T ss_pred ccc-chh-hhcCCCCCEEECCCCccCccc-cccCCCccCeEEcCCCc-ccCchh-hcCCCCCCEEECcCCcCCCchhhcc
Confidence 222 222 444555555555555443322 24455555555555554 222221 111111111111000 011335
Q ss_pred CCccceeeccccccccccccCCCccccCCCccceeeecccccCcCCCcCCCCCCCcCEEEEecCc
Q 003037 760 FPKLKQVLFYNICHWEEWDFGKGDSITIMPQLKKLEFERCTELKSVPEKLLRSTTLEELSIVECP 824 (854)
Q Consensus 760 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 824 (854)
+++|+.|++.++ .+..++ .+..+++|+.|++++|. +..++. +..+++|+.|++++|+
T Consensus 330 l~~L~~L~l~~n-~l~~~~-----~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 330 LTKLQRLFFYNN-KVSDVS-----SLANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQA 386 (466)
T ss_dssp CTTCCEEECCSS-CCCCCG-----GGTTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECCCEE
T ss_pred CccCCEeECCCC-ccCCch-----hhccCCCCCEEeCCCCc-cCccch-hhcCCCCCEEeccCCc
Confidence 666666666664 333321 34567788888888774 444433 6777888888888775
No 21
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=9.8e-22 Score=210.73 Aligned_cols=231 Identities=22% Similarity=0.314 Sum_probs=142.4
Q ss_pred CCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccccCCCceeeecCCCCcccchhhhc
Q 003037 481 KKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIEELPETCCE 560 (854)
Q Consensus 481 ~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~~lP~~i~~ 560 (854)
.++++|.+.++. +.. +|..+.++++|++|+|++|. +..+|..++++.+|++|+|++|.++.+|..+++
T Consensus 81 ~~l~~L~L~~n~---l~~-lp~~l~~l~~L~~L~L~~n~--------l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~ 148 (328)
T 4fcg_A 81 PGRVALELRSVP---LPQ-FPDQAFRLSHLQHMTIDAAG--------LMELPDTMQQFAGLETLTLARNPLRALPASIAS 148 (328)
T ss_dssp TTCCEEEEESSC---CSS-CCSCGGGGTTCSEEEEESSC--------CCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGG
T ss_pred cceeEEEccCCC---chh-cChhhhhCCCCCEEECCCCC--------ccchhHHHhccCCCCEEECCCCccccCcHHHhc
Confidence 456666666665 333 44445566666777776666 556666666666677777766666666666666
Q ss_pred CCCCcEEeecCcccccccccccccCCCCcccCceeecCCCCCCcccccccccCCceeEEecccCCCChhHHHHhhccCCC
Q 003037 561 LFNVQTLEVLDCRSFRRLPQGFGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLGNVRDADEAKSAELEKKK 640 (854)
Q Consensus 561 L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~ 640 (854)
+++|++|++++|..+..+|..++... + ...+.+++
T Consensus 149 l~~L~~L~L~~n~~~~~~p~~~~~~~--------------------------------~-------------~~~~~~l~ 183 (328)
T 4fcg_A 149 LNRLRELSIRACPELTELPEPLASTD--------------------------------A-------------SGEHQGLV 183 (328)
T ss_dssp CTTCCEEEEEEETTCCCCCSCSEEEC----------------------------------------------CCCEEEST
T ss_pred CcCCCEEECCCCCCccccChhHhhcc--------------------------------c-------------hhhhccCC
Confidence 66677777666655555555432200 0 00123344
Q ss_pred CCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCchhhcccCccEEEEecccCCCCCCCCCCCCC
Q 003037 641 NLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCDTMPPLGKLPS 720 (854)
Q Consensus 641 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~ 720 (854)
+|+.|++++| .... +|.++..+++|+.|+|++|.+....+.++.+++
T Consensus 184 ~L~~L~L~~n--------------------------------~l~~-lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~ 230 (328)
T 4fcg_A 184 NLQSLRLEWT--------------------------------GIRS-LPASIANLQNLKSLKIRNSPLSALGPAIHHLPK 230 (328)
T ss_dssp TCCEEEEEEE--------------------------------CCCC-CCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTT
T ss_pred CCCEEECcCC--------------------------------CcCc-chHhhcCCCCCCEEEccCCCCCcCchhhccCCC
Confidence 4455555444 2222 565566666666666666655543334566666
Q ss_pred CCEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCCCccceeeccccccccccccCCCccccCCCccceeeecccc
Q 003037 721 LEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLKQVLFYNICHWEEWDFGKGDSITIMPQLKKLEFERCT 800 (854)
Q Consensus 721 L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~ 800 (854)
|++|+|++|...+.+|..+ ..+++|+.|++.+|..+..++. .+..+++|++|+|++|+
T Consensus 231 L~~L~Ls~n~~~~~~p~~~------------------~~l~~L~~L~L~~n~~~~~~p~----~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 231 LEELDLRGCTALRNYPPIF------------------GGRAPLKRLILKDCSNLLTLPL----DIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp CCEEECTTCTTCCBCCCCT------------------TCCCCCCEEECTTCTTCCBCCT----TGGGCTTCCEEECTTCT
T ss_pred CCEEECcCCcchhhhHHHh------------------cCCCCCCEEECCCCCchhhcch----hhhcCCCCCEEeCCCCC
Confidence 6666666665554444322 2466666666666555444443 34578999999999999
Q ss_pred cCcCCCcCCCCCCCcCEEEEecC
Q 003037 801 ELKSVPEKLLRSTTLEELSIVEC 823 (854)
Q Consensus 801 ~l~~lp~~l~~l~~L~~L~l~~c 823 (854)
.++.+|..+.++++|+.+++...
T Consensus 289 ~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 289 NLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TCCCCCGGGGGSCTTCEEECCGG
T ss_pred chhhccHHHhhccCceEEeCCHH
Confidence 99999999999999999988743
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=1.3e-21 Score=228.20 Aligned_cols=302 Identities=16% Similarity=0.140 Sum_probs=223.3
Q ss_pred cCceEEEEeeeCCCC-CCcc-cccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccc-c
Q 003037 458 VEKVRHSMLKLGYDS-FPDS-IFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPK-E 534 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~-~~~~-~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~-~ 534 (854)
..+++.+.+.++... +|.. +..+++|++|.+.++. +....|..|..+++|++|+|++|. +..+|. .
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~--------l~~~~~~~ 118 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ---IEEIDTYAFAYAHTIQKLYMGFNA--------IRYLPPHV 118 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC---CCEECTTTTTTCTTCCEEECCSSC--------CCCCCTTT
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC---CCCCChHHhcCCCCCCEEECCCCc--------CCCCCHHH
Confidence 456788888777654 4443 5678999999999988 666566689999999999999998 777765 5
Q ss_pred ccccCCCceeeecCCCCcccchhh-hcCCCCcEEeecCccccccccc-ccccCCCCcccCceeecCCCCCCccccccccc
Q 003037 535 IKKLIHLRFLKLVWLDIEELPETC-CELFNVQTLEVLDCRSFRRLPQ-GFGKLVNLRNLSKFIVSRSGGSKLEDLRQLKH 612 (854)
Q Consensus 535 i~~L~~L~~L~L~~~~i~~lP~~i-~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~ 612 (854)
++++++|++|+|++|.++.+|..+ +++++|++|++++|. +..+|. .++.+++|++|....... ....+..+++
T Consensus 119 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~l~~--- 193 (597)
T 3oja_B 119 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRL-THVDLSLIPS--- 193 (597)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCC-SBCCGGGCTT---
T ss_pred HcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCC-CCcChhhhhh---
Confidence 689999999999999999999874 899999999999998 666554 588888988884322111 1122333333
Q ss_pred CCceeEEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCchh
Q 003037 613 LRGSLKIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWI 692 (854)
Q Consensus 613 L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~ 692 (854)
|. .+.+.+. .. ..+....+|+.|+++++. ...++.. .+++|+.|++ .++.... +.++
T Consensus 194 L~-~L~l~~n----~l-----~~l~~~~~L~~L~ls~n~--------l~~~~~~--~~~~L~~L~L-~~n~l~~--~~~l 250 (597)
T 3oja_B 194 LF-HANVSYN----LL-----STLAIPIAVEELDASHNS--------INVVRGP--VNVELTILKL-QHNNLTD--TAWL 250 (597)
T ss_dssp CS-EEECCSS----CC-----SEEECCTTCSEEECCSSC--------CCEEECS--CCSCCCEEEC-CSSCCCC--CGGG
T ss_pred hh-hhhcccC----cc-----ccccCCchhheeeccCCc--------ccccccc--cCCCCCEEEC-CCCCCCC--Chhh
Confidence 33 5544431 11 224556789999998872 1111111 2368999999 6665544 5678
Q ss_pred hcccCccEEEEecccCCCCCCC-CCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCCCccceeecccc
Q 003037 693 VSLNKLKKLVLYQFYLCDTMPP-LGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLKQVLFYNI 771 (854)
Q Consensus 693 ~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 771 (854)
..+++|+.|+|++|.+....|. ++.+++|+.|+|++|. +..++..+ ..+|+|+.|+++++
T Consensus 251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~------------------~~l~~L~~L~Ls~N 311 (597)
T 3oja_B 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYG------------------QPIPTLKVLDLSHN 311 (597)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECSS------------------SCCTTCCEEECCSS
T ss_pred ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCccc------------------ccCCCCcEEECCCC
Confidence 8999999999999988776564 8899999999999987 66665432 36899999999985
Q ss_pred ccccccccCCCccccCCCccceeeecccccCcCCCcCCCCCCCcCEEEEecCcc
Q 003037 772 CHWEEWDFGKGDSITIMPQLKKLEFERCTELKSVPEKLLRSTTLEELSIVECPI 825 (854)
Q Consensus 772 ~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 825 (854)
.+..++. .+..+++|+.|++++| .+..+| +..+++|+.|+|++||-
T Consensus 312 -~l~~i~~----~~~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 312 -HLLHVER----NQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp -CCCCCGG----GHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSCE
T ss_pred -CCCccCc----ccccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEeeCCCC
Confidence 4444443 4567999999999999 567676 66789999999999873
No 23
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=1.7e-21 Score=211.55 Aligned_cols=285 Identities=18% Similarity=0.212 Sum_probs=216.9
Q ss_pred cccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccccCCCceeeecCCCCccc
Q 003037 475 DSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIEEL 554 (854)
Q Consensus 475 ~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~~l 554 (854)
..+..+++|++|.+.++. +.. ++. +..+++|++|++++|. +..+|. +.++++|++|++++|.++.+
T Consensus 38 ~~~~~l~~L~~L~l~~~~---i~~-~~~-~~~~~~L~~L~l~~n~--------i~~~~~-~~~l~~L~~L~L~~n~i~~~ 103 (347)
T 4fmz_A 38 VTQEELESITKLVVAGEK---VAS-IQG-IEYLTNLEYLNLNGNQ--------ITDISP-LSNLVKLTNLYIGTNKITDI 103 (347)
T ss_dssp ECHHHHTTCSEEECCSSC---CCC-CTT-GGGCTTCCEEECCSSC--------CCCCGG-GTTCTTCCEEECCSSCCCCC
T ss_pred ccchhcccccEEEEeCCc---ccc-chh-hhhcCCccEEEccCCc--------cccchh-hhcCCcCCEEEccCCcccCc
Confidence 345678999999999988 444 343 8889999999999998 888887 99999999999999999998
Q ss_pred chhhhcCCCCcEEeecCcccccccccccccCCCCcccCceeecCCCCCCcccccccccCCceeEEecccCCCChhHHHHh
Q 003037 555 PETCCELFNVQTLEVLDCRSFRRLPQGFGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLGNVRDADEAKSA 634 (854)
Q Consensus 555 P~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~ 634 (854)
| .+.++++|++|++++|. +..+|. +..+++|++|...... ....+..+..+.+|+ .|.+.+... ... .
T Consensus 104 ~-~~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~--~~~~~~~~~~l~~L~-~L~l~~~~~-~~~-----~ 171 (347)
T 4fmz_A 104 S-ALQNLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANH--NLSDLSPLSNMTGLN-YLTVTESKV-KDV-----T 171 (347)
T ss_dssp G-GGTTCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCT--TCCCCGGGTTCTTCC-EEECCSSCC-CCC-----G
T ss_pred h-HHcCCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCC--CcccccchhhCCCCc-EEEecCCCc-CCc-----h
Confidence 7 59999999999999998 888887 8888888888432221 122333455555565 666665322 111 1
Q ss_pred hccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCchhhcccCccEEEEecccCCCCCCC
Q 003037 635 ELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCDTMPP 714 (854)
Q Consensus 635 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~ 714 (854)
.+..+++|+.|+++++.. ..+ ..+..+++|+.|++ .++.... ++. +..+++|+.|++++|.+.... .
T Consensus 172 ~~~~l~~L~~L~l~~n~l--------~~~-~~~~~l~~L~~L~l-~~n~l~~-~~~-~~~~~~L~~L~l~~n~l~~~~-~ 238 (347)
T 4fmz_A 172 PIANLTDLYSLSLNYNQI--------EDI-SPLASLTSLHYFTA-YVNQITD-ITP-VANMTRLNSLKIGNNKITDLS-P 238 (347)
T ss_dssp GGGGCTTCSEEECTTSCC--------CCC-GGGGGCTTCCEEEC-CSSCCCC-CGG-GGGCTTCCEEECCSSCCCCCG-G
T ss_pred hhccCCCCCEEEccCCcc--------ccc-ccccCCCccceeec-ccCCCCC-Cch-hhcCCcCCEEEccCCccCCCc-c
Confidence 267889999999988721 111 12566789999999 6665544 444 778999999999999776543 4
Q ss_pred CCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCCCccceeeccccccccccccCCCccccCCCcccee
Q 003037 715 LGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLKQVLFYNICHWEEWDFGKGDSITIMPQLKKL 794 (854)
Q Consensus 715 l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L 794 (854)
+..+++|+.|++++|. +..++. ...+++|+.|++.++ .+..++ .+..+++|+.|
T Consensus 239 ~~~l~~L~~L~l~~n~-l~~~~~-------------------~~~l~~L~~L~l~~n-~l~~~~-----~~~~l~~L~~L 292 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQ-ISDINA-------------------VKDLTKLKMLNVGSN-QISDIS-----VLNNLSQLNSL 292 (347)
T ss_dssp GTTCTTCCEEECCSSC-CCCCGG-------------------GTTCTTCCEEECCSS-CCCCCG-----GGGGCTTCSEE
T ss_pred hhcCCCCCEEECCCCc-cCCChh-------------------HhcCCCcCEEEccCC-ccCCCh-----hhcCCCCCCEE
Confidence 8899999999999986 444431 246899999999985 455543 35679999999
Q ss_pred eecccccCcCCCcCCCCCCCcCEEEEecCc
Q 003037 795 EFERCTELKSVPEKLLRSTTLEELSIVECP 824 (854)
Q Consensus 795 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 824 (854)
++++|......|..+..+++|++|++++|+
T Consensus 293 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp ECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred ECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 999996555566778889999999999997
No 24
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=4.1e-21 Score=222.37 Aligned_cols=336 Identities=17% Similarity=0.194 Sum_probs=200.0
Q ss_pred cCceEEEEeeeCCCC--CCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccccccc-
Q 003037 458 VEKVRHSMLKLGYDS--FPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKE- 534 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~--~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~- 534 (854)
...++++.+..+... .+..+..+++|++|.+.+|. +....|..|.++++|++|+|++|. +..+|..
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls~n~--------l~~~~~~~ 93 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR---INTIEGDAFYSLGSLEHLDLSDNH--------LSSLSSSW 93 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECTTSC--------CCSCCHHH
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCC---cCccChhhccccccCCEEECCCCc--------cCccCHHH
Confidence 467888888887765 34567888888998888887 555566778888888888888888 6776654
Q ss_pred ccccCCCceeeecCCCCcc--cchhhhcCCCCcEEeecCcccccccc-cccccCCCCcccCceeecCCC--CCCcccccc
Q 003037 535 IKKLIHLRFLKLVWLDIEE--LPETCCELFNVQTLEVLDCRSFRRLP-QGFGKLVNLRNLSKFIVSRSG--GSKLEDLRQ 609 (854)
Q Consensus 535 i~~L~~L~~L~L~~~~i~~--lP~~i~~L~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~~~~~~~~~--~~~l~~L~~ 609 (854)
++++.+|++|++++|.++. .|..++++++|++|++++|..+..+| ..++.+++|++|......... ...+..+++
T Consensus 94 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 173 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD 173 (549)
T ss_dssp HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcccc
Confidence 8888888888888888874 46678888888888888887566666 357777777777332221110 011111111
Q ss_pred ---------------------cccCCceeEEecccCCC-----------------------Chh----HHHHhh------
Q 003037 610 ---------------------LKHLRGSLKIQGLGNVR-----------------------DAD----EAKSAE------ 635 (854)
Q Consensus 610 ---------------------L~~L~~~L~i~~l~~~~-----------------------~~~----~~~~~~------ 635 (854)
+.+|+ .|.+.+..-.. ... ......
T Consensus 174 L~~L~l~~n~~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~ 252 (549)
T 2z81_A 174 IHHLTLHLSESAFLLEIFADILSSVR-YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE 252 (549)
T ss_dssp EEEEEEECSBSTTHHHHHHHSTTTBS-EEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTT
T ss_pred CceEecccCcccccchhhHhhccccc-EEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcc
Confidence 11222 22222100000 000 000000
Q ss_pred -----------------------------------------------------------------------------ccC
Q 003037 636 -----------------------------------------------------------------------------LEK 638 (854)
Q Consensus 636 -----------------------------------------------------------------------------l~~ 638 (854)
+..
T Consensus 253 L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~ 332 (549)
T 2z81_A 253 LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQH 332 (549)
T ss_dssp CCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHH
T ss_pred ccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhc
Confidence 012
Q ss_pred CCCCCcEEEEecCCCCCCCcchHHH---hhhCCCCCCCCeEEEeccCCCCCCCC---chhhcccCccEEEEecccCCCCC
Q 003037 639 KKNLLDLVLSFDGGQRIGDVNDKAI---IEALQPPPNIESLRIEYHYIGISGWP---SWIVSLNKLKKLVLYQFYLCDTM 712 (854)
Q Consensus 639 ~~~L~~L~l~~~~~~~~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~lp---~~~~~l~~L~~L~L~~~~~~~~l 712 (854)
+++|+.|+++.| ...... ...+..+++|+.|++ +++.... +| ..+..+++|+.|+|++|.+....
T Consensus 333 l~~L~~L~Ls~N-------~l~~~~~~~~~~~~~l~~L~~L~L-s~N~l~~-~~~~~~~~~~l~~L~~L~Ls~N~l~~lp 403 (549)
T 2z81_A 333 LKSLEFLDLSEN-------LMVEEYLKNSACKGAWPSLQTLVL-SQNHLRS-MQKTGEILLTLKNLTSLDISRNTFHPMP 403 (549)
T ss_dssp CTTCCEEECCSS-------CCCHHHHHHHTCTTSSTTCCEEEC-TTSCCCC-HHHHHHHGGGCTTCCEEECTTCCCCCCC
T ss_pred CccccEEEccCC-------ccccccccchhhhhccccCcEEEc-cCCcccc-cccchhhhhcCCCCCEEECCCCCCccCC
Confidence 333444444333 111112 122455667777777 4444333 33 23556777788888777665433
Q ss_pred CCCCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCC--ccccCCCccceeeccccccccccccCCCccccCCCc
Q 003037 713 PPLGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTS--SSVIAFPKLKQVLFYNICHWEEWDFGKGDSITIMPQ 790 (854)
Q Consensus 713 ~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~ 790 (854)
..++.+++|++|++++|. +..++..+. ..+..+....+. .....+++|+.|+++++ .+..++. ...+++
T Consensus 404 ~~~~~~~~L~~L~Ls~N~-l~~l~~~~~--~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~-----~~~l~~ 474 (549)
T 2z81_A 404 DSCQWPEKMRFLNLSSTG-IRVVKTCIP--QTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPD-----ASLFPV 474 (549)
T ss_dssp SCCCCCTTCCEEECTTSC-CSCCCTTSC--TTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCC-----GGGCTT
T ss_pred hhhcccccccEEECCCCC-cccccchhc--CCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCC-----cccCcc
Confidence 346677788888887776 444443321 111111111111 11236889999999884 5555543 236899
Q ss_pred cceeeecccccCcCCC-cCCCCCCCcCEEEEecCc
Q 003037 791 LKKLEFERCTELKSVP-EKLLRSTTLEELSIVECP 824 (854)
Q Consensus 791 L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~ 824 (854)
|+.|++++| .+..+| ..+..+++|+.|++++||
T Consensus 475 L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 475 LLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred CCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCC
Confidence 999999998 455554 458889999999998887
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.86 E-value=5.6e-21 Score=215.93 Aligned_cols=303 Identities=18% Similarity=0.218 Sum_probs=167.0
Q ss_pred cCceEEEEeeeCCCCCCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccc
Q 003037 458 VEKVRHSMLKLGYDSFPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKK 537 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~ 537 (854)
..+++++.+..+.......+..+++|++|.+.++. +... +. +.++++|++|++++|. +..+|. +++
T Consensus 67 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~---l~~~-~~-~~~l~~L~~L~L~~n~--------l~~~~~-~~~ 132 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQ---IADI-TP-LANLTNLTGLTLFNNQ--------ITDIDP-LKN 132 (466)
T ss_dssp CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC---CCCC-GG-GTTCTTCCEEECCSSC--------CCCCGG-GTT
T ss_pred hcCCCEEECCCCccCCchhhhccccCCEEECCCCc---cccC-hh-hcCCCCCCEEECCCCC--------CCCChH-HcC
Confidence 45677777777765533337777788888887776 4442 33 7777888888888777 666664 677
Q ss_pred cCCCceeeecCCCCcccch--------------------hhhcCCCCcEEeecCcccccccccccccCCCCcccCceeec
Q 003037 538 LIHLRFLKLVWLDIEELPE--------------------TCCELFNVQTLEVLDCRSFRRLPQGFGKLVNLRNLSKFIVS 597 (854)
Q Consensus 538 L~~L~~L~L~~~~i~~lP~--------------------~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~ 597 (854)
+++|++|++++|.+..+|. .+.++++|++|++++|. +..++. +..+++|++|...
T Consensus 133 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~--- 207 (466)
T 1o6v_A 133 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDISV-LAKLTNLESLIAT--- 207 (466)
T ss_dssp CTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECC---
T ss_pred CCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCChh-hccCCCCCEEEec---
Confidence 7777777777777666553 13344455555555554 444432 4444455444221
Q ss_pred CCCCCCcccccccccCCceeEEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEE
Q 003037 598 RSGGSKLEDLRQLKHLRGSLKIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLR 677 (854)
Q Consensus 598 ~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 677 (854)
.+....+..+..+.+|+ .|.+.+.. +... ..+..+++|+.|+++.+.. .... .+..+++|+.|+
T Consensus 208 ~n~l~~~~~~~~l~~L~-~L~l~~n~-l~~~-----~~l~~l~~L~~L~l~~n~l--------~~~~-~~~~l~~L~~L~ 271 (466)
T 1o6v_A 208 NNQISDITPLGILTNLD-ELSLNGNQ-LKDI-----GTLASLTNLTDLDLANNQI--------SNLA-PLSGLTKLTELK 271 (466)
T ss_dssp SSCCCCCGGGGGCTTCC-EEECCSSC-CCCC-----GGGGGCTTCSEEECCSSCC--------CCCG-GGTTCTTCSEEE
T ss_pred CCcccccccccccCCCC-EEECCCCC-cccc-----hhhhcCCCCCEEECCCCcc--------ccch-hhhcCCCCCEEE
Confidence 11111111122333333 44443311 1111 2345566677777766511 1111 145566777777
Q ss_pred EeccCCCCCCCCchhhcccCccEEEEecccCCCCCCCCCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCcccc----C
Q 003037 678 IEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCDTMPPLGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGIS----T 753 (854)
Q Consensus 678 l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~----~ 753 (854)
+ .++.... +|. +..+++|+.|++++|.+.. ++.++.+++|+.|+|++|. +..++. +.....+..+.... .
T Consensus 272 l-~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~ 345 (466)
T 1o6v_A 272 L-GANQISN-ISP-LAGLTALTNLELNENQLED-ISPISNLKNLTYLTLYFNN-ISDISP-VSSLTKLQRLFFYNNKVSD 345 (466)
T ss_dssp C-CSSCCCC-CGG-GTTCTTCSEEECCSSCCSC-CGGGGGCTTCSEEECCSSC-CSCCGG-GGGCTTCCEEECCSSCCCC
T ss_pred C-CCCccCc-ccc-ccCCCccCeEEcCCCcccC-chhhcCCCCCCEEECcCCc-CCCchh-hccCccCCEeECCCCccCC
Confidence 7 4444433 443 5566677777777665544 2335666677777776665 333222 11111111111111 1
Q ss_pred CccccCCCccceeeccccccccccccCCCccccCCCccceeeecccccCcCCCcC
Q 003037 754 SSSVIAFPKLKQVLFYNICHWEEWDFGKGDSITIMPQLKKLEFERCTELKSVPEK 808 (854)
Q Consensus 754 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~ 808 (854)
......+++|+.|++.++ .+..+.. +..+++|+.|++++|+ +..+|..
T Consensus 346 ~~~l~~l~~L~~L~l~~n-~l~~~~~-----~~~l~~L~~L~l~~n~-~~~~p~~ 393 (466)
T 1o6v_A 346 VSSLANLTNINWLSAGHN-QISDLTP-----LANLTRITQLGLNDQA-WTNAPVN 393 (466)
T ss_dssp CGGGTTCTTCCEEECCSS-CCCBCGG-----GTTCTTCCEEECCCEE-EECCCBC
T ss_pred chhhccCCCCCEEeCCCC-ccCccch-----hhcCCCCCEEeccCCc-ccCCchh
Confidence 123457899999999985 3444432 4579999999999995 5556644
No 26
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=5.2e-21 Score=214.48 Aligned_cols=306 Identities=14% Similarity=0.080 Sum_probs=194.4
Q ss_pred cCceEEEEeeeCCCCCCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccc
Q 003037 458 VEKVRHSMLKLGYDSFPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKK 537 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~ 537 (854)
..+++++.+..+.....+.+..+++|++|.+.+|. +.+ +| +..+++|++|++++|. +..+| +++
T Consensus 41 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~---l~~-~~--~~~l~~L~~L~Ls~N~--------l~~~~--~~~ 104 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNN---ITT-LD--LSQNTNLTYLACDSNK--------LTNLD--VTP 104 (457)
T ss_dssp HTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSC---CSC-CC--CTTCTTCSEEECCSSC--------CSCCC--CTT
T ss_pred cCCCCEEEccCCCcccChhhcccCCCCEEEccCCc---CCe-Ec--cccCCCCCEEECcCCC--------Cceee--cCC
Confidence 45677888877766544467788888888888887 444 33 7788888888888888 77775 788
Q ss_pred cCCCceeeecCCCCcccchhhhcCCCCcEEeecCcccccccccccccCCCCcccCceeecCCCCCCcccccccccCCcee
Q 003037 538 LIHLRFLKLVWLDIEELPETCCELFNVQTLEVLDCRSFRRLPQGFGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSL 617 (854)
Q Consensus 538 L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L 617 (854)
+++|++|++++|.++.+| ++++++|++|++++|. +..+| ++.+++|++|........+... +..+.+|+ .|
T Consensus 105 l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~-~L 175 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLT-TL 175 (457)
T ss_dssp CTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCC-EE
T ss_pred CCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCcccccc---cccCCcCC-EE
Confidence 888888888888888876 7888888888888887 66665 6777777777332221111112 33333343 55
Q ss_pred EEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCchhhcccC
Q 003037 618 KIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWIVSLNK 697 (854)
Q Consensus 618 ~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~ 697 (854)
.+.+. .+... .+..+++|+.|+++.+... .+ .+..+++|+.|++ +++.... +| +..+++
T Consensus 176 ~ls~n-~l~~l------~l~~l~~L~~L~l~~N~l~--------~~--~l~~l~~L~~L~L-s~N~l~~-ip--~~~l~~ 234 (457)
T 3bz5_A 176 DCSFN-KITEL------DVSQNKLLNRLNCDTNNIT--------KL--DLNQNIQLTFLDC-SSNKLTE-ID--VTPLTQ 234 (457)
T ss_dssp ECCSS-CCCCC------CCTTCTTCCEEECCSSCCS--------CC--CCTTCTTCSEEEC-CSSCCSC-CC--CTTCTT
T ss_pred ECCCC-cccee------ccccCCCCCEEECcCCcCC--------ee--ccccCCCCCEEEC-cCCcccc-cC--ccccCC
Confidence 55432 11111 1566778888888776211 11 2566778888888 5555555 66 667788
Q ss_pred ccEEEEecccCCCCCCCCCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCCCccceeecccccccccc
Q 003037 698 LKKLVLYQFYLCDTMPPLGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLKQVLFYNICHWEEW 777 (854)
Q Consensus 698 L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 777 (854)
|+.|++++|.+.+.. ++.+++|+.|+++++. ++.+.-.... .. .....+.+++|+.|+++++..+..+
T Consensus 235 L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~-L~~L~l~~n~--------~~-~~~~~~~l~~L~~L~Ls~n~~l~~l 302 (457)
T 3bz5_A 235 LTYFDCSVNPLTELD--VSTLSKLTTLHCIQTD-LLEIDLTHNT--------QL-IYFQAEGCRKIKELDVTHNTQLYLL 302 (457)
T ss_dssp CSEEECCSSCCSCCC--CTTCTTCCEEECTTCC-CSCCCCTTCT--------TC-CEEECTTCTTCCCCCCTTCTTCCEE
T ss_pred CCEEEeeCCcCCCcC--HHHCCCCCEEeccCCC-CCEEECCCCc--------cC-CcccccccccCCEEECCCCccccee
Confidence 888888888765532 3455555555554433 2222110000 00 0001235788888888888766555
Q ss_pred ccCCC----ccccCCCccceeeecccccCcCCCcCCCCCCCcCEEEEecCc
Q 003037 778 DFGKG----DSITIMPQLKKLEFERCTELKSVPEKLLRSTTLEELSIVECP 824 (854)
Q Consensus 778 ~~~~~----~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 824 (854)
+.... -.+..+++|+.|++++| .+..+| +..+++|+.|+++++.
T Consensus 303 ~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 303 DCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp ECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSSC
T ss_pred ccCCCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEECCCCC
Confidence 43111 12446788888888887 566665 7788899999887664
No 27
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=5.7e-21 Score=222.31 Aligned_cols=123 Identities=23% Similarity=0.242 Sum_probs=99.0
Q ss_pred cCceEEEEeeeCCCC--CCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccccc-cc
Q 003037 458 VEKVRHSMLKLGYDS--FPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIP-KE 534 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~--~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP-~~ 534 (854)
+..++++.+..+... .+..+..+++|++|++.+|. +..+.+..|.++++|++|+|++|. +..+| ..
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~---i~~i~~~~~~~l~~L~~L~L~~n~--------l~~~~~~~ 95 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILTGNP--------IQSLALGA 95 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC---CCEECTTTTTTCTTCCEEECTTCC--------CCEECTTT
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCc---CCccCcccccCchhCCEEeCcCCc--------CCccCHhh
Confidence 567889988888765 34467888999999999887 555556778889999999999988 66665 67
Q ss_pred ccccCCCceeeecCCCCcccch-hhhcCCCCcEEeecCcccccc--cccccccCCCCcccC
Q 003037 535 IKKLIHLRFLKLVWLDIEELPE-TCCELFNVQTLEVLDCRSFRR--LPQGFGKLVNLRNLS 592 (854)
Q Consensus 535 i~~L~~L~~L~L~~~~i~~lP~-~i~~L~~L~~L~l~~~~~l~~--lp~~i~~L~~L~~L~ 592 (854)
++++.+|++|++++|.++.+|. .++++++|++|++++|. +.. +|..++++++|++|.
T Consensus 96 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~ 155 (570)
T 2z63_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLD 155 (570)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEE
T ss_pred hcCccccccccccccccccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEe
Confidence 8888899999999888888876 58888889999998887 553 688888888888883
No 28
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=2.9e-21 Score=224.81 Aligned_cols=342 Identities=17% Similarity=0.156 Sum_probs=202.6
Q ss_pred cCceEEEEeeeCCCC--CCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccc-c
Q 003037 458 VEKVRHSMLKLGYDS--FPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPK-E 534 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~--~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~-~ 534 (854)
..+++++.+..+... .+..+.++++|++|.+.+|. +....|..|.++++|++|++++|. +..+|. .
T Consensus 51 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~--------l~~l~~~~ 119 (570)
T 2z63_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP---IQSLALGAFSGLSSLQKLVAVETN--------LASLENFP 119 (570)
T ss_dssp CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC---CCEECTTTTTTCTTCCEEECTTSC--------CCCSTTCS
T ss_pred CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc---CCccCHhhhcCccccccccccccc--------cccCCCcc
Confidence 467888888887655 24457788999999999887 555556778899999999999988 777765 5
Q ss_pred ccccCCCceeeecCCCCcc--cchhhhcCCCCcEEeecCcccccccc-cccccCCCC----cccCc--------------
Q 003037 535 IKKLIHLRFLKLVWLDIEE--LPETCCELFNVQTLEVLDCRSFRRLP-QGFGKLVNL----RNLSK-------------- 593 (854)
Q Consensus 535 i~~L~~L~~L~L~~~~i~~--lP~~i~~L~~L~~L~l~~~~~l~~lp-~~i~~L~~L----~~L~~-------------- 593 (854)
++++.+|++|++++|.++. +|..++++++|++|++++|. +..++ ..++.+++| +.|..
T Consensus 120 ~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~ 198 (570)
T 2z63_A 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198 (570)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT
T ss_pred ccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhccchhhhhcccCCCCceecCHHHhc
Confidence 8899999999999998875 68889999999999999887 55543 445555555 22200
Q ss_pred ------eeecCC------------------------------------------------------------CCCCcccc
Q 003037 594 ------FIVSRS------------------------------------------------------------GGSKLEDL 607 (854)
Q Consensus 594 ------~~~~~~------------------------------------------------------------~~~~l~~L 607 (854)
.....+ .......+
T Consensus 199 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~ 278 (570)
T 2z63_A 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278 (570)
T ss_dssp TCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTT
T ss_pred cCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhh
Confidence 000000 00000001
Q ss_pred cccccCCceeEEeccc--CCC-------------------ChhHHH----------------HhhccCCCCCCcEEEEec
Q 003037 608 RQLKHLRGSLKIQGLG--NVR-------------------DADEAK----------------SAELEKKKNLLDLVLSFD 650 (854)
Q Consensus 608 ~~L~~L~~~L~i~~l~--~~~-------------------~~~~~~----------------~~~l~~~~~L~~L~l~~~ 650 (854)
..+.+|+ .+.+.+.. .+. ...... ......+++|+.|+++.+
T Consensus 279 ~~l~~L~-~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n 357 (570)
T 2z63_A 279 NCLTNVS-SFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN 357 (570)
T ss_dssp GGGTTCS-EEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSS
T ss_pred cCcCccc-EEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCC
Confidence 1122222 22222110 000 000000 000145678888888776
Q ss_pred CCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCchhhcccCccEEEEecccCCCCCC--CCCCCCCCCEEEEcC
Q 003037 651 GGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCDTMP--PLGKLPSLEILEIRG 728 (854)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~--~l~~L~~L~~L~L~~ 728 (854)
... .....+..+..+++|+.|++ .++.... +|..+..+++|+.|++++|.+....+ .++.+++|++|++++
T Consensus 358 ~l~-----~~~~~~~~~~~~~~L~~L~l-~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 430 (570)
T 2z63_A 358 GLS-----FKGCCSQSDFGTTSLKYLDL-SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430 (570)
T ss_dssp CCB-----EEEEEEHHHHTCSCCCEEEC-CSCSEEE-EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTT
T ss_pred ccC-----ccccccccccccCccCEEEC-CCCcccc-ccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcC
Confidence 110 00001233445677888888 5554444 45446677777777777776655444 366777777777777
Q ss_pred CCCceEeCccccCCCCCCCCcccc-------CCccccCCCccceeeccccccccccccCCCccccCCCccceeeeccccc
Q 003037 729 NWNVKRVGDEFLGVGGGDHLHGIS-------TSSSVIAFPKLKQVLFYNICHWEEWDFGKGDSITIMPQLKKLEFERCTE 801 (854)
Q Consensus 729 ~~~l~~i~~~~~~~~~~~~l~~~~-------~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~ 801 (854)
|......+..+.....++.+.... .+.....+++|+.|++.++ .+..+ .+..+..+++|++|++++| .
T Consensus 431 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~---~~~~~~~l~~L~~L~l~~n-~ 505 (570)
T 2z63_A 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQL---SPTAFNSLSSLQVLNMASN-Q 505 (570)
T ss_dssp SCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEE---CTTTTTTCTTCCEEECCSS-C
T ss_pred CcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccC---ChhhhhcccCCCEEeCCCC-c
Confidence 763222332222222222222111 1123456788888888874 23333 2224557888899999888 4
Q ss_pred CcCCC-cCCCCCCCcCEEEEecCc
Q 003037 802 LKSVP-EKLLRSTTLEELSIVECP 824 (854)
Q Consensus 802 l~~lp-~~l~~l~~L~~L~l~~c~ 824 (854)
+..+| ..+..+++|++|++++||
T Consensus 506 l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 506 LKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCHHHhhcccCCcEEEecCCc
Confidence 55554 457788889999988765
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=1.3e-20 Score=228.50 Aligned_cols=323 Identities=17% Similarity=0.143 Sum_probs=214.1
Q ss_pred ccCceEEEEeeeCCCC--CCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccc-cc
Q 003037 457 SVEKVRHSMLKLGYDS--FPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEI-PK 533 (854)
Q Consensus 457 ~~~~~r~l~l~~~~~~--~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~l-P~ 533 (854)
.+.+++++.+..+... .+..+.++++|++|++.+|.. ...+.|..|.++++|++|+|++|. +..+ |.
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~--~~~i~~~~f~~L~~L~~L~Ls~N~--------l~~~~p~ 91 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT--PLTIDKEAFRNLPNLRILDLGSSK--------IYFLHPD 91 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCC--CCEECTTTTSSCTTCCEEECTTCC--------CCEECTT
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCC--ccccCHHHhcCCCCCCEEECCCCc--------CcccCHh
Confidence 4788999999988866 467889999999999999853 333347789999999999999998 6665 88
Q ss_pred cccccCCCceeeecCCCCcc-cchh--hhcCCCCcEEeecCcccccccc--cccccCCCCcccCceeecCCCCCCccccc
Q 003037 534 EIKKLIHLRFLKLVWLDIEE-LPET--CCELFNVQTLEVLDCRSFRRLP--QGFGKLVNLRNLSKFIVSRSGGSKLEDLR 608 (854)
Q Consensus 534 ~i~~L~~L~~L~L~~~~i~~-lP~~--i~~L~~L~~L~l~~~~~l~~lp--~~i~~L~~L~~L~~~~~~~~~~~~l~~L~ 608 (854)
.++++.+|++|+|++|.++. +|.. ++++++|++|++++|. +..++ ..+++|++|++|....... .......+.
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i-~~~~~~~l~ 169 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQI-FLVCEHELE 169 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCC-CCCCSGGGH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcC-CeeCHHHcc
Confidence 99999999999999999885 5665 8999999999999998 65553 4688999999984332211 111222333
Q ss_pred cc--ccCCceeEEecccCCCChhHHHHhhccCCC------CCCcEEEEecCCCCCCCcchHH------------------
Q 003037 609 QL--KHLRGSLKIQGLGNVRDADEAKSAELEKKK------NLLDLVLSFDGGQRIGDVNDKA------------------ 662 (854)
Q Consensus 609 ~L--~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~------~L~~L~l~~~~~~~~~~~~~~~------------------ 662 (854)
.+ .+|+ .|.+....-. ...+..+..+. +|+.|+++.+............
T Consensus 170 ~l~~~~L~-~L~L~~n~l~----~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~ 244 (844)
T 3j0a_A 170 PLQGKTLS-FFSLAANSLY----SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244 (844)
T ss_dssp HHHHCSSC-CCEECCSBSC----CCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCB
T ss_pred cccCCccc-eEECCCCccc----cccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccc
Confidence 33 3444 5555432111 11112223333 4899999877211100000000
Q ss_pred -----------HhhhCCC--CCCCCeEEEeccCCCCCCCCchhhcccCccEEEEecccCCCCCCC-CCCCCCCCEEEEcC
Q 003037 663 -----------IIEALQP--PPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCDTMPP-LGKLPSLEILEIRG 728 (854)
Q Consensus 663 -----------~~~~l~~--~~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~ 728 (854)
....+.. +++|+.|++ +++......|..+..+++|+.|+|++|.+....+. ++.+++|++|+|++
T Consensus 245 ~~~~~~~l~~~~~~~f~~l~~~~L~~L~L-s~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~ 323 (844)
T 3j0a_A 245 AGFGFHNIKDPDQNTFAGLARSSVRHLDL-SHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323 (844)
T ss_dssp CSSSCSSSTTGGGTTTTTTTTSCCCEEEC-TTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEES
T ss_pred ccccccccCCCChhhhhccccCCccEEEC-CCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCC
Confidence 0001111 257888888 44444332466677788888888888877665553 77788888888888
Q ss_pred CCCceEeCccccCCCCCCCCccccCCccccCCCccceeeccccccccccccCCCccccCCCccceeeecccccCcCCCcC
Q 003037 729 NWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLKQVLFYNICHWEEWDFGKGDSITIMPQLKKLEFERCTELKSVPEK 808 (854)
Q Consensus 729 ~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~ 808 (854)
|. +..+.... ...+++|+.|++.++ .+..++ +..+..+++|+.|++++| .+..+|.
T Consensus 324 N~-l~~~~~~~-----------------~~~l~~L~~L~L~~N-~i~~~~---~~~~~~l~~L~~L~Ls~N-~l~~i~~- 379 (844)
T 3j0a_A 324 NL-LGELYSSN-----------------FYGLPKVAYIDLQKN-HIAIIQ---DQTFKFLEKLQTLDLRDN-ALTTIHF- 379 (844)
T ss_dssp CC-CSCCCSCS-----------------CSSCTTCCEEECCSC-CCCCCC---SSCSCSCCCCCEEEEETC-CSCCCSS-
T ss_pred CC-CCccCHHH-----------------hcCCCCCCEEECCCC-CCCccC---hhhhcCCCCCCEEECCCC-CCCcccC-
Confidence 76 33332211 236888999998884 333333 334567899999999988 5665553
Q ss_pred CCCCCCcCEEEEecCc
Q 003037 809 LLRSTTLEELSIVECP 824 (854)
Q Consensus 809 l~~l~~L~~L~l~~c~ 824 (854)
+++|+.|++++|.
T Consensus 380 ---~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 380 ---IPSIPDIFLSGNK 392 (844)
T ss_dssp ---CCSCSEEEEESCC
T ss_pred ---CCCcchhccCCCC
Confidence 6788888888775
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=5.7e-21 Score=210.78 Aligned_cols=285 Identities=16% Similarity=0.167 Sum_probs=214.5
Q ss_pred ccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccc-cccccCCCceeeecCCCCcccch
Q 003037 478 FSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPK-EIKKLIHLRFLKLVWLDIEELPE 556 (854)
Q Consensus 478 ~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~-~i~~L~~L~~L~L~~~~i~~lP~ 556 (854)
..+.+++.|.+.++. +..+.+..+..+++|++|+|++|. +..+|. .++.+.+|++|+|++|.++.+|+
T Consensus 42 ~~l~~l~~l~l~~~~---l~~l~~~~~~~l~~L~~L~L~~n~--------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 110 (390)
T 3o6n_A 42 ITLNNQKIVTFKNST---MRKLPAALLDSFRQVELLNLNDLQ--------IEEIDTYAFAYAHTIQKLYMGFNAIRYLPP 110 (390)
T ss_dssp GGGCCCSEEEEESCE---ESEECTHHHHHCCCCSEEECTTSC--------CCEECTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cccCCceEEEecCCc---hhhCChhHhcccccCcEEECCCCc--------ccccChhhccCCCCcCEEECCCCCCCcCCH
Confidence 457899999999987 666555668999999999999999 777764 88999999999999999998865
Q ss_pred -hhhcCCCCcEEeecCccccccccccc-ccCCCCcccCceeecCCCCCCcccccccccCCceeEEecccCCCChhHHHHh
Q 003037 557 -TCCELFNVQTLEVLDCRSFRRLPQGF-GKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLGNVRDADEAKSA 634 (854)
Q Consensus 557 -~i~~L~~L~~L~l~~~~~l~~lp~~i-~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~ 634 (854)
.++++++|++|++++|. +..+|.++ +.+++|++|........ ......+..+.+|+ .|.+.+.. +.. .
T Consensus 111 ~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~-~L~l~~n~-l~~------~ 180 (390)
T 3o6n_A 111 HVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQ-NLQLSSNR-LTH------V 180 (390)
T ss_dssp TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTSSCTTCC-EEECCSSC-CSB------C
T ss_pred HHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccC-ccChhhccCCCCCC-EEECCCCc-CCc------c
Confidence 58999999999999998 88999875 78999999843322111 11112244445555 66665421 111 1
Q ss_pred hccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCchhhcccCccEEEEecccCCCCCCC
Q 003037 635 ELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCDTMPP 714 (854)
Q Consensus 635 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~ 714 (854)
.+..+++|+.|+++.+. +..+..+++|+.|++ .++.... +|.. .+++|+.|++++|.+.. ++.
T Consensus 181 ~~~~l~~L~~L~l~~n~------------l~~~~~~~~L~~L~l-~~n~l~~-~~~~--~~~~L~~L~l~~n~l~~-~~~ 243 (390)
T 3o6n_A 181 DLSLIPSLFHANVSYNL------------LSTLAIPIAVEELDA-SHNSINV-VRGP--VNVELTILKLQHNNLTD-TAW 243 (390)
T ss_dssp CGGGCTTCSEEECCSSC------------CSEEECCSSCSEEEC-CSSCCCE-EECC--CCSSCCEEECCSSCCCC-CGG
T ss_pred ccccccccceeeccccc------------ccccCCCCcceEEEC-CCCeeee-cccc--ccccccEEECCCCCCcc-cHH
Confidence 35567889999998771 223445678999999 6655444 4443 35899999999997765 467
Q ss_pred CCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCCCccceeeccccccccccccCCCccccCCCcccee
Q 003037 715 LGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLKQVLFYNICHWEEWDFGKGDSITIMPQLKKL 794 (854)
Q Consensus 715 l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L 794 (854)
++.+++|+.|+|++|. +..++... ...+++|+.|++.++ .+..++.. +..+++|++|
T Consensus 244 l~~l~~L~~L~Ls~n~-l~~~~~~~-----------------~~~l~~L~~L~L~~n-~l~~~~~~----~~~l~~L~~L 300 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNE-LEKIMYHP-----------------FVKMQRLERLYISNN-RLVALNLY----GQPIPTLKVL 300 (390)
T ss_dssp GGGCTTCSEEECCSSC-CCEEESGG-----------------GTTCSSCCEEECCSS-CCCEEECS----SSCCTTCCEE
T ss_pred HcCCCCccEEECCCCc-CCCcChhH-----------------ccccccCCEEECCCC-cCcccCcc----cCCCCCCCEE
Confidence 8899999999999997 44443222 236899999999984 55655542 3479999999
Q ss_pred eecccccCcCCCcCCCCCCCcCEEEEecCc
Q 003037 795 EFERCTELKSVPEKLLRSTTLEELSIVECP 824 (854)
Q Consensus 795 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 824 (854)
++++| .+..+|..+..+++|++|++++|+
T Consensus 301 ~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 301 DLSHN-HLLHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp ECCSS-CCCCCGGGHHHHTTCSEEECCSSC
T ss_pred ECCCC-cceecCccccccCcCCEEECCCCc
Confidence 99999 688899888889999999999996
No 31
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=8.8e-21 Score=222.35 Aligned_cols=182 Identities=23% Similarity=0.205 Sum_probs=96.0
Q ss_pred ccccCCCceeeecCCCCcccchhhhcCCCCcEEeecCccccccc-ccccccCCCCcccCceeecCCCCCCcccccccccC
Q 003037 535 IKKLIHLRFLKLVWLDIEELPETCCELFNVQTLEVLDCRSFRRL-PQGFGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHL 613 (854)
Q Consensus 535 i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L 613 (854)
++++++|++|++++|.++.+|..++++++|++|++++|. +..+ |..++.+++|++|...............+..+.+|
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANK-FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCC-CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECccCC-cCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 556666777777777666666666666777777777666 4443 44566666666663322211111111113333333
Q ss_pred CceeEEecccCCCChhHHH--HhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCC-Cc
Q 003037 614 RGSLKIQGLGNVRDADEAK--SAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGW-PS 690 (854)
Q Consensus 614 ~~~L~i~~l~~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l-p~ 690 (854)
+ .|.+.+.. ..... ...+..+++|+.|+++.+. .....+..+..+++|+.|++ .++...... +.
T Consensus 353 ~-~L~l~~n~----l~~~~~~~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l-~~n~l~~~~~~~ 419 (606)
T 3t6q_A 353 R-ELDLSHDD----IETSDCCNLQLRNLSHLQSLNLSYNE-------PLSLKTEAFKECPQLELLDL-AFTRLKVKDAQS 419 (606)
T ss_dssp C-EEECCSSC----CCEEEESTTTTTTCTTCCEEECCSCS-------CEEECTTTTTTCTTCSEEEC-TTCCEECCTTCC
T ss_pred C-EEECCCCc----cccccCcchhcccCCCCCEEECCCCc-------CCcCCHHHhcCCccCCeEEC-CCCcCCCcccch
Confidence 3 44443311 11111 2345566677777776651 11122344555666777777 444333212 23
Q ss_pred hhhcccCccEEEEecccCCCCCCC-CCCCCCCCEEEEcCCC
Q 003037 691 WIVSLNKLKKLVLYQFYLCDTMPP-LGKLPSLEILEIRGNW 730 (854)
Q Consensus 691 ~~~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~ 730 (854)
++..+++|+.|++++|.+....|. ++.+++|++|+|++|.
T Consensus 420 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp TTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred hhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence 356667777777777666554443 5666777777777665
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=1.6e-20 Score=213.13 Aligned_cols=295 Identities=20% Similarity=0.139 Sum_probs=219.8
Q ss_pred cCceEEEEeeeCCCC--CCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccccccc-
Q 003037 458 VEKVRHSMLKLGYDS--FPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKE- 534 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~--~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~- 534 (854)
+..++.+.+..+... .+..+..+++|++|.+.+|. +....|..|.++++|++|+|++|. +..+|..
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~--------l~~~~~~~ 99 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI---VSAVEPGAFNNLFNLRTLGLRSNR--------LKLIPLGV 99 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECCSSC--------CCSCCTTS
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCc---cCEeChhhhhCCccCCEEECCCCc--------CCccCccc
Confidence 568999999988866 34678899999999999997 666668889999999999999999 8888864
Q ss_pred ccccCCCceeeecCCCCccc-chhhhcCCCCcEEeecCccccccc-ccccccCCCCcccCceeecCCCCCCccccccccc
Q 003037 535 IKKLIHLRFLKLVWLDIEEL-PETCCELFNVQTLEVLDCRSFRRL-PQGFGKLVNLRNLSKFIVSRSGGSKLEDLRQLKH 612 (854)
Q Consensus 535 i~~L~~L~~L~L~~~~i~~l-P~~i~~L~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~ 612 (854)
++++.+|++|+|++|.+..+ |..+.++++|++|++++|. +..+ |..+..+++|++|........ ......+.++.+
T Consensus 100 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~ 177 (477)
T 2id5_A 100 FTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHG 177 (477)
T ss_dssp STTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTT
T ss_pred ccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCC
Confidence 68999999999999999876 5678999999999999998 5555 556888889988843322111 111122445555
Q ss_pred CCceeEEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCc-h
Q 003037 613 LRGSLKIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPS-W 691 (854)
Q Consensus 613 L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~-~ 691 (854)
|+ .|.+.+.. ........+..+++|+.|+++.+. ....++.......+|+.|++ .++.... +|. .
T Consensus 178 L~-~L~l~~n~----i~~~~~~~~~~l~~L~~L~l~~~~-------~~~~~~~~~~~~~~L~~L~l-~~n~l~~-~~~~~ 243 (477)
T 2id5_A 178 LI-VLRLRHLN----INAIRDYSFKRLYRLKVLEISHWP-------YLDTMTPNCLYGLNLTSLSI-THCNLTA-VPYLA 243 (477)
T ss_dssp CC-EEEEESCC----CCEECTTCSCSCTTCCEEEEECCT-------TCCEECTTTTTTCCCSEEEE-ESSCCCS-CCHHH
T ss_pred Cc-EEeCCCCc----CcEeChhhcccCcccceeeCCCCc-------cccccCcccccCccccEEEC-cCCcccc-cCHHH
Confidence 55 77766521 222233467888999999999872 12223344444569999999 6665555 774 5
Q ss_pred hhcccCccEEEEecccCCCCCCC-CCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCCCccceeeccc
Q 003037 692 IVSLNKLKKLVLYQFYLCDTMPP-LGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLKQVLFYN 770 (854)
Q Consensus 692 ~~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 770 (854)
+..+++|+.|+|++|.+....+. +..+++|+.|+|++|. +..++... ...+++|+.|++++
T Consensus 244 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-----------------~~~l~~L~~L~L~~ 305 (477)
T 2id5_A 244 VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPYA-----------------FRGLNYLRVLNVSG 305 (477)
T ss_dssp HTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC-CSEECTTT-----------------BTTCTTCCEEECCS
T ss_pred hcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc-cceECHHH-----------------hcCcccCCEEECCC
Confidence 77899999999999987654443 8899999999999997 55554332 23689999999998
Q ss_pred cccccccccCCCccccCCCccceeeeccccc
Q 003037 771 ICHWEEWDFGKGDSITIMPQLKKLEFERCTE 801 (854)
Q Consensus 771 ~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~ 801 (854)
+ .+..++. ..+..+++|+.|++++|+.
T Consensus 306 N-~l~~~~~---~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 306 N-QLTTLEE---SVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp S-CCSCCCG---GGBSCGGGCCEEECCSSCE
T ss_pred C-cCceeCH---hHcCCCcccCEEEccCCCc
Confidence 4 4444432 2456789999999998863
No 33
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=1.8e-20 Score=227.40 Aligned_cols=101 Identities=24% Similarity=0.280 Sum_probs=48.9
Q ss_pred CCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccc-cccccccCCCceeeecCCCCccc-chhh
Q 003037 481 KKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEI-PKEIKKLIHLRFLKLVWLDIEEL-PETC 558 (854)
Q Consensus 481 ~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~l-P~~i~~L~~L~~L~L~~~~i~~l-P~~i 558 (854)
+++++|++++|. +....|..|.++++|++|+|++|.. +..+ |..+++|.+|++|+|++|.+..+ |..+
T Consensus 24 ~~l~~LdLs~N~---i~~i~~~~~~~l~~L~~LdLs~n~~-------~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~ 93 (844)
T 3j0a_A 24 NTTERLLLSFNY---IRTVTASSFPFLEQLQLLELGSQYT-------PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF 93 (844)
T ss_dssp TTCCEEEEESCC---CCEECSSSCSSCCSCSEEEECTTCC-------CCEECTTTTSSCTTCCEEECTTCCCCEECTTSS
T ss_pred CCcCEEECCCCc---CCccChhHCcccccCeEEeCCCCCC-------ccccCHHHhcCCCCCCEEECCCCcCcccCHhHc
Confidence 455555555554 3333344455555555555555532 3333 44455555555555555555443 4445
Q ss_pred hcCCCCcEEeecCcccccccccc--cccCCCCccc
Q 003037 559 CELFNVQTLEVLDCRSFRRLPQG--FGKLVNLRNL 591 (854)
Q Consensus 559 ~~L~~L~~L~l~~~~~l~~lp~~--i~~L~~L~~L 591 (854)
+++++|++|++++|.....+|.. +++|++|++|
T Consensus 94 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L 128 (844)
T 3j0a_A 94 QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL 128 (844)
T ss_dssp CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEE
T ss_pred cCCcccCEeeCcCCCCCcccccCccccccCCCCEE
Confidence 55555555555555421223333 4455555554
No 34
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.85 E-value=1.4e-20 Score=212.52 Aligned_cols=300 Identities=15% Similarity=0.140 Sum_probs=207.1
Q ss_pred cCceEEEEeeeCCCC--C-CcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccc-ccc
Q 003037 458 VEKVRHSMLKLGYDS--F-PDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVE-IPK 533 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~--~-~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~-lP~ 533 (854)
..+++++.+..+... + +..+..+++|++|++.+|. +....|..|.++++|++|+|++|. +.. +|.
T Consensus 53 l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~~n~--------l~~~~~~ 121 (455)
T 3v47_A 53 LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ---FLQLETGAFNGLANLEVLTLTQCN--------LDGAVLS 121 (455)
T ss_dssp CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT---TCEECTTTTTTCTTCCEEECTTSC--------CBTHHHH
T ss_pred CccccEEECcCCcccceECcccccccccCCEEeCCCCc---cCccChhhccCcccCCEEeCCCCC--------CCccccC
Confidence 567999999988653 2 4568889999999999998 566568889999999999999999 654 454
Q ss_pred c--ccccCCCceeeecCCCCccc-chh-hhcCCCCcEEeecCcccccccccccccC--CCCcccCceeecCCCCCCcc--
Q 003037 534 E--IKKLIHLRFLKLVWLDIEEL-PET-CCELFNVQTLEVLDCRSFRRLPQGFGKL--VNLRNLSKFIVSRSGGSKLE-- 605 (854)
Q Consensus 534 ~--i~~L~~L~~L~L~~~~i~~l-P~~-i~~L~~L~~L~l~~~~~l~~lp~~i~~L--~~L~~L~~~~~~~~~~~~l~-- 605 (854)
. ++++.+|++|+|++|.++.+ |.. +.++++|++|++++|......|..+..+ .+|+.|. +.......+.
T Consensus 122 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~---l~~n~l~~~~~~ 198 (455)
T 3v47_A 122 GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR---LSSITLQDMNEY 198 (455)
T ss_dssp SSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEE---CTTCBCTTCSTT
T ss_pred cccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccc---cccCcccccchh
Confidence 4 89999999999999999977 555 8999999999999998333345555554 3444442 2211111100
Q ss_pred --------cccccccCCceeEEecccCCCChhHHHHhhc-------------------------------------c--C
Q 003037 606 --------DLRQLKHLRGSLKIQGLGNVRDADEAKSAEL-------------------------------------E--K 638 (854)
Q Consensus 606 --------~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l-------------------------------------~--~ 638 (854)
.+..+.+|+ .|.+.+. ......+..+ . .
T Consensus 199 ~~~~~~~~~~~~~~~L~-~L~Ls~n----~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (455)
T 3v47_A 199 WLGWEKCGNPFKNTSIT-TLDLSGN----GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLE 273 (455)
T ss_dssp CTTHHHHCCTTTTCEEE-EEECTTS----CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGT
T ss_pred hccccccccccccceee-eEecCCC----cccccchhhhhccccccceeeEeeccccccccccchhhhccCccccccccc
Confidence 011112222 3333321 1111111111 0 1
Q ss_pred CCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCchhhcccCccEEEEecccCCCCCCC-CCC
Q 003037 639 KKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCDTMPP-LGK 717 (854)
Q Consensus 639 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~ 717 (854)
.++|+.|+++.+. .....+..+..+++|+.|++ .++......|.++..+++|+.|+|++|.+....+. ++.
T Consensus 274 ~~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~L-s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 345 (455)
T 3v47_A 274 ASGVKTCDLSKSK-------IFALLKSVFSHFTDLEQLTL-AQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN 345 (455)
T ss_dssp TSCCCEEECCSSC-------CCEECTTTTTTCTTCCEEEC-TTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTT
T ss_pred ccCceEEEecCcc-------ccccchhhcccCCCCCEEEC-CCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcC
Confidence 2567778877761 22223556778899999999 66655553577888999999999999988665554 889
Q ss_pred CCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCCCccceeeccccccccccccCCCccccCCCccceeeec
Q 003037 718 LPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLKQVLFYNICHWEEWDFGKGDSITIMPQLKKLEFE 797 (854)
Q Consensus 718 L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~ 797 (854)
+++|+.|+|++|. +..++... ...+++|+.|++.+ +.+..++. ..+..+++|++|+++
T Consensus 346 l~~L~~L~Ls~N~-l~~~~~~~-----------------~~~l~~L~~L~L~~-N~l~~~~~---~~~~~l~~L~~L~l~ 403 (455)
T 3v47_A 346 LDKLEVLDLSYNH-IRALGDQS-----------------FLGLPNLKELALDT-NQLKSVPD---GIFDRLTSLQKIWLH 403 (455)
T ss_dssp CTTCCEEECCSSC-CCEECTTT-----------------TTTCTTCCEEECCS-SCCSCCCT---TTTTTCTTCCEEECC
T ss_pred cccCCEEECCCCc-ccccChhh-----------------ccccccccEEECCC-CccccCCH---hHhccCCcccEEEcc
Confidence 9999999999997 55554322 23689999999998 34555443 245689999999999
Q ss_pred ccccCcCCC
Q 003037 798 RCTELKSVP 806 (854)
Q Consensus 798 ~c~~l~~lp 806 (854)
+|+.....|
T Consensus 404 ~N~l~~~~~ 412 (455)
T 3v47_A 404 TNPWDCSCP 412 (455)
T ss_dssp SSCBCCCTT
T ss_pred CCCcccCCC
Confidence 997655555
No 35
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.85 E-value=1.8e-20 Score=222.83 Aligned_cols=251 Identities=18% Similarity=0.108 Sum_probs=169.2
Q ss_pred cCceEEEEeeeCCCC-CC-cccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccc-c
Q 003037 458 VEKVRHSMLKLGYDS-FP-DSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPK-E 534 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~-~~-~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~-~ 534 (854)
+.+++++.+..+... .+ ..+.++++|++|++.++. +....|..|.++++|++|+|++|. +..+|. .
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~~n~--------l~~l~~~~ 92 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT---ISKLEPELCQKLPMLKVLNLQHNE--------LSQLSDKT 92 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC---CCCCCTTHHHHCTTCCEEECCSSC--------CCCCCTTT
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc---cCccCHHHHhcccCcCEEECCCCc--------cCccChhh
Confidence 578999999988765 33 458889999999999987 666678889999999999999998 888887 5
Q ss_pred ccccCCCceeeecCCCCcccc-hhhhcCCCCcEEeecCcccccccccccccCCCCcccCceeecCCCCCCccccc--ccc
Q 003037 535 IKKLIHLRFLKLVWLDIEELP-ETCCELFNVQTLEVLDCRSFRRLPQGFGKLVNLRNLSKFIVSRSGGSKLEDLR--QLK 611 (854)
Q Consensus 535 i~~L~~L~~L~L~~~~i~~lP-~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~--~L~ 611 (854)
++++.+|++|++++|.++.+| ..++++++|++|++++|......|..++++++|++|........ ......+. .+.
T Consensus 93 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~~ 171 (680)
T 1ziw_A 93 FAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ-ALKSEELDIFANS 171 (680)
T ss_dssp TTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC-CBCHHHHGGGTTC
T ss_pred hccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc-ccCHHHhhccccc
Confidence 899999999999999999887 57899999999999999833344566788888888843221111 11111111 123
Q ss_pred cCCceeEEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCch
Q 003037 612 HLRGSLKIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSW 691 (854)
Q Consensus 612 ~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~ 691 (854)
.|+ .|.+.+. ......+..+..+.+|+.|.+..+.. .......+...+ ..++|+.|++ .++......|.+
T Consensus 172 ~L~-~L~L~~n----~l~~~~~~~~~~l~~L~~L~l~~~~l---~~~~~~~~~~~l-~~~~L~~L~L-~~n~l~~~~~~~ 241 (680)
T 1ziw_A 172 SLK-KLELSSN----QIKEFSPGCFHAIGRLFGLFLNNVQL---GPSLTEKLCLEL-ANTSIRNLSL-SNSQLSTTSNTT 241 (680)
T ss_dssp EES-EEECTTC----CCCCBCTTGGGGSSEECEEECTTCCC---HHHHHHHHHHHH-TTSCCCEEEC-TTSCCCEECTTT
T ss_pred ccc-EEECCCC----cccccChhhhhhhhhhhhhhcccccc---ChhhHHHHHHHh-hhccccEEEc-cCCcccccChhH
Confidence 333 5554431 11222234456677777777755410 000011111111 2467888888 555544435666
Q ss_pred hhcccC--ccEEEEecccCCCCCCC-CCCCCCCCEEEEcCCC
Q 003037 692 IVSLNK--LKKLVLYQFYLCDTMPP-LGKLPSLEILEIRGNW 730 (854)
Q Consensus 692 ~~~l~~--L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~ 730 (854)
+..++. |+.|+|++|.+....+. ++.+++|++|++++|.
T Consensus 242 ~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283 (680)
T ss_dssp TGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC
T ss_pred hhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCc
Confidence 766644 88888888876655443 7778888888888876
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=1.2e-20 Score=211.40 Aligned_cols=286 Identities=16% Similarity=0.134 Sum_probs=201.6
Q ss_pred CcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccccCCCceeeecCCCCcc
Q 003037 474 PDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIEE 553 (854)
Q Consensus 474 ~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~~ 553 (854)
+..+.++++|++|.+.++. +.+ +| .+..+++|++|++++|. +..+| ++.+.+|++|++++|.++.
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~---l~~-~~-~l~~l~~L~~L~Ls~n~--------l~~~~--~~~l~~L~~L~Ls~N~l~~ 99 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSS---ITD-MT-GIEKLTGLTKLICTSNN--------ITTLD--LSQNTNLTYLACDSNKLTN 99 (457)
T ss_dssp EEEHHHHTTCCEEECCSSC---CCC-CT-TGGGCTTCSEEECCSSC--------CSCCC--CTTCTTCSEEECCSSCCSC
T ss_pred ccChhHcCCCCEEEccCCC---ccc-Ch-hhcccCCCCEEEccCCc--------CCeEc--cccCCCCCEEECcCCCCce
Confidence 4467789999999999998 555 45 48999999999999999 88886 8999999999999999999
Q ss_pred cchhhhcCCCCcEEeecCcccccccccccccCCCCcccCceeecCCCCCCcccccccccCCceeEEecccCCCChhHHHH
Q 003037 554 LPETCCELFNVQTLEVLDCRSFRRLPQGFGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLGNVRDADEAKS 633 (854)
Q Consensus 554 lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~ 633 (854)
+| ++++++|++|++++|. +..+| ++.+++|++|... .+....+ .+..+.+|+ .|.+.....+...
T Consensus 100 ~~--~~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~---~N~l~~l-~l~~l~~L~-~L~l~~n~~~~~~----- 164 (457)
T 3bz5_A 100 LD--VTPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCA---RNTLTEI-DVSHNTQLT-ELDCHLNKKITKL----- 164 (457)
T ss_dssp CC--CTTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECT---TSCCSCC-CCTTCTTCC-EEECTTCSCCCCC-----
T ss_pred ee--cCCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECC---CCcccee-ccccCCcCC-EEECCCCCccccc-----
Confidence 86 8999999999999998 78886 7888888888432 2222122 244455555 6666553332221
Q ss_pred hhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCchhhcccCccEEEEecccCCCCCC
Q 003037 634 AELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCDTMP 713 (854)
Q Consensus 634 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~ 713 (854)
.+..+++|+.|+++++.. ..+ + +..+++|+.|++ .++.... ++ +..+++|+.|++++|.+.+ +|
T Consensus 165 -~~~~l~~L~~L~ls~n~l--------~~l-~-l~~l~~L~~L~l-~~N~l~~-~~--l~~l~~L~~L~Ls~N~l~~-ip 228 (457)
T 3bz5_A 165 -DVTPQTQLTTLDCSFNKI--------TEL-D-VSQNKLLNRLNC-DTNNITK-LD--LNQNIQLTFLDCSSNKLTE-ID 228 (457)
T ss_dssp -CCTTCTTCCEEECCSSCC--------CCC-C-CTTCTTCCEEEC-CSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC
T ss_pred -ccccCCcCCEEECCCCcc--------cee-c-cccCCCCCEEEC-cCCcCCe-ec--cccCCCCCEEECcCCcccc-cC
Confidence 367789999999998721 112 1 667889999999 6665554 53 7789999999999998776 56
Q ss_pred CCCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCCCccceeeccccccccccccCCCccccCCCccce
Q 003037 714 PLGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLKQVLFYNICHWEEWDFGKGDSITIMPQLKK 793 (854)
Q Consensus 714 ~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~ 793 (854)
++.+++|+.|++++|. +..++...+ ..+..+. -...+|+.|++.++..+..++. ..+++|+.
T Consensus 229 -~~~l~~L~~L~l~~N~-l~~~~~~~l-----~~L~~L~-----l~~n~L~~L~l~~n~~~~~~~~------~~l~~L~~ 290 (457)
T 3bz5_A 229 -VTPLTQLTYFDCSVNP-LTELDVSTL-----SKLTTLH-----CIQTDLLEIDLTHNTQLIYFQA------EGCRKIKE 290 (457)
T ss_dssp -CTTCTTCSEEECCSSC-CSCCCCTTC-----TTCCEEE-----CTTCCCSCCCCTTCTTCCEEEC------TTCTTCCC
T ss_pred -ccccCCCCEEEeeCCc-CCCcCHHHC-----CCCCEEe-----ccCCCCCEEECCCCccCCcccc------cccccCCE
Confidence 8899999999999997 544442100 0000000 0112445555555544444432 36899999
Q ss_pred eeecccccCcCCCcCCCCCCCcCEEEEecCcch
Q 003037 794 LEFERCTELKSVPEKLLRSTTLEELSIVECPIL 826 (854)
Q Consensus 794 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l 826 (854)
|++++|+.++.+|.. .++|+.|++++|++|
T Consensus 291 L~Ls~n~~l~~l~~~---~~~L~~L~l~~~~~L 320 (457)
T 3bz5_A 291 LDVTHNTQLYLLDCQ---AAGITELDLSQNPKL 320 (457)
T ss_dssp CCCTTCTTCCEEECT---TCCCSCCCCTTCTTC
T ss_pred EECCCCcccceeccC---CCcceEechhhcccC
Confidence 999999988888753 234444444444444
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=1.3e-20 Score=219.76 Aligned_cols=286 Identities=17% Similarity=0.178 Sum_probs=215.6
Q ss_pred ccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccc-cccccCCCceeeecCCCCcccch
Q 003037 478 FSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPK-EIKKLIHLRFLKLVWLDIEELPE 556 (854)
Q Consensus 478 ~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~-~i~~L~~L~~L~L~~~~i~~lP~ 556 (854)
..+.+++.|.+.++. +..+.+..+.++++|++|+|++|. +..+|. .++.+.+|++|+|++|.++.+|+
T Consensus 48 l~l~~l~~l~l~~~~---l~~lp~~~~~~l~~L~~L~L~~n~--------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 116 (597)
T 3oja_B 48 ITLNNQKIVTFKNST---MRKLPAALLDSFRQVELLNLNDLQ--------IEEIDTYAFAYAHTIQKLYMGFNAIRYLPP 116 (597)
T ss_dssp GGGCCCSEEEESSCE---ESEECTHHHHHCCCCSEEECTTSC--------CCEECTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ccCCCceEEEeeCCC---CCCcCHHHHccCCCCcEEECCCCC--------CCCCChHHhcCCCCCCEEECCCCcCCCCCH
Confidence 356889999999887 666566778999999999999999 777764 89999999999999999998876
Q ss_pred h-hhcCCCCcEEeecCccccccccccc-ccCCCCcccCceeecCCCCCCcccccccccCCceeEEecccCCCChhHHHHh
Q 003037 557 T-CCELFNVQTLEVLDCRSFRRLPQGF-GKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLGNVRDADEAKSA 634 (854)
Q Consensus 557 ~-i~~L~~L~~L~l~~~~~l~~lp~~i-~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~ 634 (854)
. ++++++|++|++++|. +..+|..+ +.+++|++|........ ......+..+.+|+ .|.+.+.. +.. .
T Consensus 117 ~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~-~L~L~~N~-l~~------~ 186 (597)
T 3oja_B 117 HVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQ-NLQLSSNR-LTH------V 186 (597)
T ss_dssp TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCC-EEECTTSC-CSB------C
T ss_pred HHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCC-CCChhhhhcCCcCc-EEECcCCC-CCC------c
Confidence 5 6999999999999998 88999875 88999999844322111 11122344455555 66665421 111 1
Q ss_pred hccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCchhhcccCccEEEEecccCCCCCCC
Q 003037 635 ELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCDTMPP 714 (854)
Q Consensus 635 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~ 714 (854)
.+..+++|+.|+++++ .+..+..+++|+.|++ +++.... +|..+ .++|+.|+|++|.+.+ ++.
T Consensus 187 ~~~~l~~L~~L~l~~n------------~l~~l~~~~~L~~L~l-s~n~l~~-~~~~~--~~~L~~L~L~~n~l~~-~~~ 249 (597)
T 3oja_B 187 DLSLIPSLFHANVSYN------------LLSTLAIPIAVEELDA-SHNSINV-VRGPV--NVELTILKLQHNNLTD-TAW 249 (597)
T ss_dssp CGGGCTTCSEEECCSS------------CCSEEECCTTCSEEEC-CSSCCCE-EECSC--CSCCCEEECCSSCCCC-CGG
T ss_pred ChhhhhhhhhhhcccC------------ccccccCCchhheeec-cCCcccc-ccccc--CCCCCEEECCCCCCCC-Chh
Confidence 2556788999999877 1233456678999999 6655444 44432 4789999999998765 466
Q ss_pred CCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCCCccceeeccccccccccccCCCccccCCCcccee
Q 003037 715 LGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLKQVLFYNICHWEEWDFGKGDSITIMPQLKKL 794 (854)
Q Consensus 715 l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L 794 (854)
++.+++|+.|+|++|......|.. ...+++|+.|++++ +.+..++.. +..+++|+.|
T Consensus 250 l~~l~~L~~L~Ls~N~l~~~~~~~------------------~~~l~~L~~L~Ls~-N~l~~l~~~----~~~l~~L~~L 306 (597)
T 3oja_B 250 LLNYPGLVEVDLSYNELEKIMYHP------------------FVKMQRLERLYISN-NRLVALNLY----GQPIPTLKVL 306 (597)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGG------------------GTTCSSCCEEECTT-SCCCEEECS----SSCCTTCCEE
T ss_pred hccCCCCCEEECCCCccCCCCHHH------------------hcCccCCCEEECCC-CCCCCCCcc----cccCCCCcEE
Confidence 889999999999999843333433 23689999999998 455665542 3469999999
Q ss_pred eecccccCcCCCcCCCCCCCcCEEEEecCcc
Q 003037 795 EFERCTELKSVPEKLLRSTTLEELSIVECPI 825 (854)
Q Consensus 795 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 825 (854)
++++| .+..+|..+..+++|+.|++++|+-
T Consensus 307 ~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~l 336 (597)
T 3oja_B 307 DLSHN-HLLHVERNQPQFDRLENLYLDHNSI 336 (597)
T ss_dssp ECCSS-CCCCCGGGHHHHTTCSEEECCSSCC
T ss_pred ECCCC-CCCccCcccccCCCCCEEECCCCCC
Confidence 99999 5778998888899999999999963
No 38
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.83 E-value=8.6e-21 Score=219.64 Aligned_cols=110 Identities=18% Similarity=0.187 Sum_probs=93.3
Q ss_pred CCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccccc-ccccccCCCceeeecCCCC
Q 003037 473 FPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIP-KEIKKLIHLRFLKLVWLDI 551 (854)
Q Consensus 473 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP-~~i~~L~~L~~L~L~~~~i 551 (854)
+|..+. ++|++|++.+|. +....|..|.++++|++|+|++|. +..+| ..++++.+|++|+|++|.+
T Consensus 20 ip~~~~--~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~n~--------i~~~~~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 20 IPSGLT--AAMKSLDLSFNK---ITYIGHGDLRACANLQVLILKSSR--------INTIEGDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp CCSCCC--TTCCEEECCSSC---CCEECSSTTSSCTTCCEEECTTSC--------CCEECTTTTTTCTTCCEEECTTSCC
T ss_pred ccccCC--CCccEEECcCCc---cCccChhhhhcCCcccEEECCCCC--------cCccChhhccccccCCEEECCCCcc
Confidence 455443 789999999998 666567789999999999999999 77765 6799999999999999999
Q ss_pred cccchh-hhcCCCCcEEeecCccccc--ccccccccCCCCcccCceee
Q 003037 552 EELPET-CCELFNVQTLEVLDCRSFR--RLPQGFGKLVNLRNLSKFIV 596 (854)
Q Consensus 552 ~~lP~~-i~~L~~L~~L~l~~~~~l~--~lp~~i~~L~~L~~L~~~~~ 596 (854)
+.+|+. ++++++|++|++++|. +. .+|..++++++|++|.....
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n 133 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNV 133 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEES
T ss_pred CccCHHHhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCC
Confidence 988876 9999999999999998 66 45678899999999955443
No 39
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=1.1e-20 Score=203.60 Aligned_cols=289 Identities=18% Similarity=0.121 Sum_probs=174.5
Q ss_pred ceEEEEeeeCCCC-CCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccc-cccccc
Q 003037 460 KVRHSMLKLGYDS-FPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEI-PKEIKK 537 (854)
Q Consensus 460 ~~r~l~l~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~l-P~~i~~ 537 (854)
.++.+.+..+... +|..+ .++|++|.+.++. +....+..|.++++|++|++++|. +..+ |..+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~---i~~~~~~~~~~l~~L~~L~L~~n~--------l~~~~~~~~~~ 100 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNND---ISELRKDDFKGLQHLYALVLVNNK--------ISKIHEKAFSP 100 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC--CTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECCSSC--------CCEECGGGSTT
T ss_pred cCCEEECCCCCccccCCCC--CCCCeEEECCCCc---CCccCHhHhhCCCCCcEEECCCCc--------cCccCHhHhhC
Confidence 3455555555433 44433 3678888888887 555456678888888888888888 6665 677888
Q ss_pred cCCCceeeecCCCCcccchhhhcCCCCcEEeecCcccccccccc-cccCCCCcccCceeecCCCCCCcccccccccCCce
Q 003037 538 LIHLRFLKLVWLDIEELPETCCELFNVQTLEVLDCRSFRRLPQG-FGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGS 616 (854)
Q Consensus 538 L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~ 616 (854)
+++|++|++++|.++.+|..+. ++|++|++++|. +..+|.. +..+++|++|...... +...
T Consensus 101 l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~------l~~~--------- 162 (332)
T 2ft3_A 101 LRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNP------LENS--------- 162 (332)
T ss_dssp CTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCC------CBGG---------
T ss_pred cCCCCEEECCCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCc------cccC---------
Confidence 8888888888888888887765 788888888887 6777654 6677777777321110 0000
Q ss_pred eEEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCchhhccc
Q 003037 617 LKIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWIVSLN 696 (854)
Q Consensus 617 L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~ 696 (854)
......+..+ +|+.|+++.+. ...++..+ .++|+.|++ +++......|..+..++
T Consensus 163 -------------~~~~~~~~~l-~L~~L~l~~n~--------l~~l~~~~--~~~L~~L~l-~~n~i~~~~~~~l~~l~ 217 (332)
T 2ft3_A 163 -------------GFEPGAFDGL-KLNYLRISEAK--------LTGIPKDL--PETLNELHL-DHNKIQAIELEDLLRYS 217 (332)
T ss_dssp -------------GSCTTSSCSC-CCSCCBCCSSB--------CSSCCSSS--CSSCSCCBC-CSSCCCCCCTTSSTTCT
T ss_pred -------------CCCcccccCC-ccCEEECcCCC--------CCccCccc--cCCCCEEEC-CCCcCCccCHHHhcCCC
Confidence 0011122333 56666666551 11122222 256777777 44444332335566777
Q ss_pred CccEEEEecccCCCCCC-CCCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCCCccceeecccccccc
Q 003037 697 KLKKLVLYQFYLCDTMP-PLGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLKQVLFYNICHWE 775 (854)
Q Consensus 697 ~L~~L~L~~~~~~~~l~-~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~ 775 (854)
+|+.|+|++|.+....+ .++.+++|+.|+|++|. +..+|..+ ..+++|+.|++.++ .+.
T Consensus 218 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l------------------~~l~~L~~L~l~~N-~l~ 277 (332)
T 2ft3_A 218 KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGL------------------PDLKLLQVVYLHTN-NIT 277 (332)
T ss_dssp TCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTG------------------GGCTTCCEEECCSS-CCC
T ss_pred CCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecChhh------------------hcCccCCEEECCCC-CCC
Confidence 77777777776655444 26667777777777775 45555432 25677777777762 344
Q ss_pred ccccCCCcc---ccCCCccceeeecccccC--cCCCcCCCCCCCcCEEEEecCc
Q 003037 776 EWDFGKGDS---ITIMPQLKKLEFERCTEL--KSVPEKLLRSTTLEELSIVECP 824 (854)
Q Consensus 776 ~~~~~~~~~---~~~l~~L~~L~l~~c~~l--~~lp~~l~~l~~L~~L~l~~c~ 824 (854)
.++...-.. ...+++|+.|++.+|+.. ...|..+..+++|+.|++++|.
T Consensus 278 ~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 278 KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp BCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 433211000 012567888888888744 3456667778888888888774
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=4.3e-20 Score=198.77 Aligned_cols=270 Identities=17% Similarity=0.136 Sum_probs=150.7
Q ss_pred CCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccc-cccccccCCCceeeecCCCCcccchhhh
Q 003037 481 KKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEI-PKEIKKLIHLRFLKLVWLDIEELPETCC 559 (854)
Q Consensus 481 ~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~l-P~~i~~L~~L~~L~L~~~~i~~lP~~i~ 559 (854)
+.+++|.+.++. +....+..|.++++|++|+|++|. +..+ |..++++++|++|++++|.++.+|..+.
T Consensus 52 ~~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~--------l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~ 120 (330)
T 1xku_A 52 PDTALLDLQNNK---ITEIKDGDFKNLKNLHTLILINNK--------ISKISPGAFAPLVKLERLYLSKNQLKELPEKMP 120 (330)
T ss_dssp TTCCEEECCSSC---CCCBCTTTTTTCTTCCEEECCSSC--------CCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC
T ss_pred CCCeEEECCCCc---CCEeChhhhccCCCCCEEECCCCc--------CCeeCHHHhcCCCCCCEEECCCCcCCccChhhc
Confidence 567777777766 445444457777777777777776 5555 6667777777777777777777776554
Q ss_pred cCCCCcEEeecCcccccccccc-cccCCCCcccCceeecCCCCCCcccccccccCCceeEEecccCCCChhHHHHhhccC
Q 003037 560 ELFNVQTLEVLDCRSFRRLPQG-FGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLGNVRDADEAKSAELEK 638 (854)
Q Consensus 560 ~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~ 638 (854)
++|++|++++|. +..+|.. +..+++|++|... .+. +.. .......+..
T Consensus 121 --~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~---~n~---l~~----------------------~~~~~~~~~~ 169 (330)
T 1xku_A 121 --KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELG---TNP---LKS----------------------SGIENGAFQG 169 (330)
T ss_dssp --TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECC---SSC---CCG----------------------GGBCTTGGGG
T ss_pred --ccccEEECCCCc-ccccCHhHhcCCccccEEECC---CCc---CCc----------------------cCcChhhccC
Confidence 577777777776 5555443 5566666666211 100 000 0011123455
Q ss_pred CCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCchhhcccCccEEEEecccCCCCCC-CCCC
Q 003037 639 KKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCDTMP-PLGK 717 (854)
Q Consensus 639 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~-~l~~ 717 (854)
+++|+.|+++.+.. ..++..+ .++|+.|++ .++......|.++..+++|+.|+|++|.+....+ .++.
T Consensus 170 l~~L~~L~l~~n~l--------~~l~~~~--~~~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 238 (330)
T 1xku_A 170 MKKLSYIRIADTNI--------TTIPQGL--PPSLTELHL-DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238 (330)
T ss_dssp CTTCCEEECCSSCC--------CSCCSSC--CTTCSEEEC-TTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred CCCcCEEECCCCcc--------ccCCccc--cccCCEEEC-CCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC
Confidence 66666666666511 1112222 256777777 4444333235566667777777777776554443 3666
Q ss_pred CCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCCCccceeeccccccccccccCCCc---cccCCCcccee
Q 003037 718 LPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLKQVLFYNICHWEEWDFGKGD---SITIMPQLKKL 794 (854)
Q Consensus 718 L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~---~~~~l~~L~~L 794 (854)
+++|+.|+|++|. +..+|..+ ..+++|+.|++.++ .+..++...-. .....++|+.|
T Consensus 239 l~~L~~L~L~~N~-l~~lp~~l------------------~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l 298 (330)
T 1xku_A 239 TPHLRELHLNNNK-LVKVPGGL------------------ADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGV 298 (330)
T ss_dssp STTCCEEECCSSC-CSSCCTTT------------------TTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEE
T ss_pred CCCCCEEECCCCc-CccCChhh------------------ccCCCcCEEECCCC-cCCccChhhcCCcccccccccccce
Confidence 7777777777765 44444332 24666777777662 33333321100 00124667777
Q ss_pred eecccccCc--CCCcCCCCCCCcCEEEEecC
Q 003037 795 EFERCTELK--SVPEKLLRSTTLEELSIVEC 823 (854)
Q Consensus 795 ~l~~c~~l~--~lp~~l~~l~~L~~L~l~~c 823 (854)
++.+|+... ..|..+..+++|+.++++++
T Consensus 299 ~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 299 SLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp ECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred EeecCcccccccCccccccccceeEEEeccc
Confidence 777775322 23456666777777777665
No 41
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.83 E-value=1.1e-19 Score=214.52 Aligned_cols=122 Identities=23% Similarity=0.267 Sum_probs=97.9
Q ss_pred cCceEEEEeeeCCCC-C-CcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccc-c
Q 003037 458 VEKVRHSMLKLGYDS-F-PDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPK-E 534 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~-~-~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~-~ 534 (854)
+..+++|.+..+.+. + +..|.++++|++|++++|. +..+.+..|.++++|++|+|++|. +..+|. .
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~---i~~i~~~~f~~L~~L~~L~Ls~N~--------l~~l~~~~ 119 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILTGNP--------IQSLALGA 119 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC---CCEECTTTTTTCTTCCEEECTTCC--------CCEECGGG
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc---CCCcChhHhcCCCCCCEEEccCCc--------CCCCCHHH
Confidence 668899999888876 3 3468889999999999887 666566778899999999999998 788775 4
Q ss_pred ccccCCCceeeecCCCCcccch-hhhcCCCCcEEeecCccccc--ccccccccCCCCccc
Q 003037 535 IKKLIHLRFLKLVWLDIEELPE-TCCELFNVQTLEVLDCRSFR--RLPQGFGKLVNLRNL 591 (854)
Q Consensus 535 i~~L~~L~~L~L~~~~i~~lP~-~i~~L~~L~~L~l~~~~~l~--~lp~~i~~L~~L~~L 591 (854)
|++|.+|++|+|++|.++.+|+ .+++|++|++|++++|. +. .+|..++.+++|++|
T Consensus 120 f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L 178 (635)
T 4g8a_A 120 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHL 178 (635)
T ss_dssp GTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEE
T ss_pred hcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhh
Confidence 7888889999998888888876 47888888888888887 54 356667777777777
No 42
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.82 E-value=2.9e-19 Score=205.29 Aligned_cols=141 Identities=17% Similarity=0.117 Sum_probs=109.0
Q ss_pred EEEEeeeCCCC-CCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccc-cccccccC
Q 003037 462 RHSMLKLGYDS-FPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEI-PKEIKKLI 539 (854)
Q Consensus 462 r~l~l~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~l-P~~i~~L~ 539 (854)
|++.+..+... +|..+. ++|++|++++|. +....|..|.++++|++|+|++|. +..+ |..++++.
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls~n~--------l~~~~~~~~~~l~ 69 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNY---ISELWTSDILSLSKLRILIISHNR--------IQYLDISVFKFNQ 69 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSC---CCCCCHHHHTTCTTCCEEECCSSC--------CCEEEGGGGTTCT
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCc---ccccChhhccccccccEEecCCCc--------cCCcChHHhhccc
Confidence 45666666544 555554 899999999998 666677889999999999999999 7776 78999999
Q ss_pred CCceeeecCCCCcccchhhhcCCCCcEEeecCcccccc--cccccccCCCCcccCceeecCCCCCCcccccccccCCcee
Q 003037 540 HLRFLKLVWLDIEELPETCCELFNVQTLEVLDCRSFRR--LPQGFGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSL 617 (854)
Q Consensus 540 ~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~--lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L 617 (854)
+|++|+|++|.++.+|.. .+++|++|++++|. +.. +|..++++++|++|........ ...+..+.+| .|+ .|
T Consensus 70 ~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~L-~L~-~L 143 (520)
T 2z7x_B 70 ELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTHLE-KSSVLPIAHL-NIS-KV 143 (520)
T ss_dssp TCCEEECCSSCCCEEECC--CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESSCC-GGGGGGGTTS-CEE-EE
T ss_pred CCCEEecCCCceeecCcc--ccCCccEEeccCCc-cccccchhhhccCCcceEEEecCcccc-hhhccccccc-eee-EE
Confidence 999999999999999987 89999999999998 654 6789999999999954433221 2233344444 114 66
Q ss_pred EEec
Q 003037 618 KIQG 621 (854)
Q Consensus 618 ~i~~ 621 (854)
.+.+
T Consensus 144 ~l~~ 147 (520)
T 2z7x_B 144 LLVL 147 (520)
T ss_dssp EEEE
T ss_pred Eeec
Confidence 6654
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=2e-20 Score=199.37 Aligned_cols=100 Identities=22% Similarity=0.341 Sum_probs=53.3
Q ss_pred CceEEEEecCCCCcccC--chhhhhcCCCcccEEEecC-CCCccccccccccccccccccCCCceeeecCCCCc-ccchh
Q 003037 482 KLRSFLIHSTNKDLISP--VLPVLFDQLTCLRTLKITG-ISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIE-ELPET 557 (854)
Q Consensus 482 ~Lr~L~l~~~~~~~~~~--~l~~~~~~l~~Lr~L~L~~-~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~-~lP~~ 557 (854)
+++.|.+.++. +.+ .+|..+.++++|++|++++ |.. ...+|..++++++|++|+|++|.++ .+|..
T Consensus 51 ~l~~L~L~~~~---l~~~~~~~~~l~~l~~L~~L~L~~~n~l-------~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 120 (313)
T 1ogq_A 51 RVNNLDLSGLN---LPKPYPIPSSLANLPYLNFLYIGGINNL-------VGPIPPAIAKLTQLHYLYITHTNVSGAIPDF 120 (313)
T ss_dssp CEEEEEEECCC---CSSCEECCGGGGGCTTCSEEEEEEETTE-------ESCCCGGGGGCTTCSEEEEEEECCEEECCGG
T ss_pred eEEEEECCCCC---ccCCcccChhHhCCCCCCeeeCCCCCcc-------cccCChhHhcCCCCCEEECcCCeeCCcCCHH
Confidence 45555555554 333 3445555566666666653 441 2245555556666666666666555 55555
Q ss_pred hhcCCCCcEEeecCcccccccccccccCCCCccc
Q 003037 558 CCELFNVQTLEVLDCRSFRRLPQGFGKLVNLRNL 591 (854)
Q Consensus 558 i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L 591 (854)
+.++++|++|++++|.....+|..++.+++|++|
T Consensus 121 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154 (313)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence 5566666666666555222455555555555554
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=1.4e-20 Score=200.52 Aligned_cols=247 Identities=18% Similarity=0.197 Sum_probs=191.3
Q ss_pred CceEEEEeeeCCCC----CCcccccCCCceEEEEec-CCCCcccCchhhhhcCCCcccEEEecCCCCccccccccc-ccc
Q 003037 459 EKVRHSMLKLGYDS----FPDSIFSAKKLRSFLIHS-TNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIV-EIP 532 (854)
Q Consensus 459 ~~~r~l~l~~~~~~----~~~~~~~~~~Lr~L~l~~-~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~-~lP 532 (854)
.+++++.+.++... +|..+..+++|++|.+.+ +. +.+.+|..|.++++|++|+|++|. +. .+|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~---l~~~~p~~l~~l~~L~~L~Ls~n~--------l~~~~p 118 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN---LVGPIPPAIAKLTQLHYLYITHTN--------VSGAIP 118 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT---EESCCCGGGGGCTTCSEEEEEEEC--------CEEECC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc---ccccCChhHhcCCCCCEEECcCCe--------eCCcCC
Confidence 67999999988764 678899999999999995 66 565678889999999999999999 65 789
Q ss_pred ccccccCCCceeeecCCCCc-ccchhhhcCCCCcEEeecCcccccccccccccCC-CCcccCceeecCCCCCCccccccc
Q 003037 533 KEIKKLIHLRFLKLVWLDIE-ELPETCCELFNVQTLEVLDCRSFRRLPQGFGKLV-NLRNLSKFIVSRSGGSKLEDLRQL 610 (854)
Q Consensus 533 ~~i~~L~~L~~L~L~~~~i~-~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~-~L~~L~~~~~~~~~~~~l~~L~~L 610 (854)
..++++++|++|++++|.++ .+|..+.++++|++|++++|.....+|..++.++ +|++|........ +.....+..+
T Consensus 119 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~-~~~~~~~~~l 197 (313)
T 1ogq_A 119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT-GKIPPTFANL 197 (313)
T ss_dssp GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE-EECCGGGGGC
T ss_pred HHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee-ccCChHHhCC
Confidence 99999999999999999998 7899999999999999999993338999999998 8998843221111 1111223333
Q ss_pred ccCCceeEEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCc
Q 003037 611 KHLRGSLKIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPS 690 (854)
Q Consensus 611 ~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~ 690 (854)
+ |+ .|.+.+ +......+..+..+++|+.|+++.+ .....++.+..+++|+.|++ +++.....+|.
T Consensus 198 ~-L~-~L~Ls~----N~l~~~~~~~~~~l~~L~~L~L~~N--------~l~~~~~~~~~l~~L~~L~L-s~N~l~~~~p~ 262 (313)
T 1ogq_A 198 N-LA-FVDLSR----NMLEGDASVLFGSDKNTQKIHLAKN--------SLAFDLGKVGLSKNLNGLDL-RNNRIYGTLPQ 262 (313)
T ss_dssp C-CS-EEECCS----SEEEECCGGGCCTTSCCSEEECCSS--------EECCBGGGCCCCTTCCEEEC-CSSCCEECCCG
T ss_pred c-cc-EEECcC----CcccCcCCHHHhcCCCCCEEECCCC--------ceeeecCcccccCCCCEEEC-cCCcccCcCCh
Confidence 3 44 555544 1222234456788899999999887 22223344677889999999 66655544898
Q ss_pred hhhcccCccEEEEecccCCCCCCCCCCCCCCCEEEEcCCCCc
Q 003037 691 WIVSLNKLKKLVLYQFYLCDTMPPLGKLPSLEILEIRGNWNV 732 (854)
Q Consensus 691 ~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l 732 (854)
++..+++|+.|+|++|.+.+.+|..+.+++|+.|++.+|+.+
T Consensus 263 ~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 263 GLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp GGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred HHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCc
Confidence 899999999999999988888888888999999999988743
No 45
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.81 E-value=1.3e-19 Score=215.45 Aligned_cols=122 Identities=19% Similarity=0.142 Sum_probs=83.2
Q ss_pred cCceEEEEeeeCCCC--CCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccccc-cc
Q 003037 458 VEKVRHSMLKLGYDS--FPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIP-KE 534 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~--~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP-~~ 534 (854)
..+++++.+..+... .+..+.++++|++|.+.+|. +..+.+..|.++++|++|+|++|. +..+| ..
T Consensus 48 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~---l~~l~~~~~~~l~~L~~L~L~~n~--------l~~~~~~~ 116 (680)
T 1ziw_A 48 YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE---LSQLSDKTFAFCTNLTELHLMSNS--------IQKIKNNP 116 (680)
T ss_dssp GTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC---CCCCCTTTTTTCTTCSEEECCSSC--------CCCCCSCT
T ss_pred CCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc---cCccChhhhccCCCCCEEECCCCc--------cCccChhH
Confidence 356777777766544 34556777888888888776 555444467788888888888887 66665 56
Q ss_pred ccccCCCceeeecCCCCccc-chhhhcCCCCcEEeecCcccccccccc-c--ccCCCCccc
Q 003037 535 IKKLIHLRFLKLVWLDIEEL-PETCCELFNVQTLEVLDCRSFRRLPQG-F--GKLVNLRNL 591 (854)
Q Consensus 535 i~~L~~L~~L~L~~~~i~~l-P~~i~~L~~L~~L~l~~~~~l~~lp~~-i--~~L~~L~~L 591 (854)
++++.+|++|++++|.++.. |..++++++|++|++++|. +..++.. + ..+++|++|
T Consensus 117 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L 176 (680)
T 1ziw_A 117 FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKL 176 (680)
T ss_dssp TTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEE
T ss_pred ccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEE
Confidence 77888888888888877654 4456777888888888776 5555443 2 234556655
No 46
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.80 E-value=9.2e-19 Score=202.84 Aligned_cols=334 Identities=14% Similarity=0.122 Sum_probs=211.2
Q ss_pred eEEEEeeeCCCC-CCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccc-ccccccc
Q 003037 461 VRHSMLKLGYDS-FPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEI-PKEIKKL 538 (854)
Q Consensus 461 ~r~l~l~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~l-P~~i~~L 538 (854)
.+++.+.++... +|..+. ++|++|++.+|. +....+..|.++++|++|+|++|. +..+ |..++++
T Consensus 33 ~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~---i~~~~~~~~~~l~~L~~L~Ls~N~--------l~~~~~~~~~~l 99 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP--PRTKALSLSQNS---ISELRMPDISFLSELRVLRLSHNR--------IRSLDFHVFLFN 99 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC--TTCCEEECCSSC---CCCCCGGGTTTCTTCCEEECCSCC--------CCEECTTTTTTC
T ss_pred CcEEEcCCCCCccCCCCCC--CCcCEEECCCCC---ccccChhhhccCCCccEEECCCCC--------CCcCCHHHhCCC
Confidence 367777777655 555443 899999999998 666667789999999999999999 7777 6789999
Q ss_pred CCCceeeecCCCCcccchhhhcCCCCcEEeecCcccccccc--cccccCCCCcccCceeecCCCCCCcccccccccCCce
Q 003037 539 IHLRFLKLVWLDIEELPETCCELFNVQTLEVLDCRSFRRLP--QGFGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGS 616 (854)
Q Consensus 539 ~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp--~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~ 616 (854)
.+|++|+|++|.++.+|.. .+++|++|++++|. +..+| ..++++++|++|....... ....+..+.+| +|+ .
T Consensus 100 ~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l-~~~~~~~l~~L-~L~-~ 173 (562)
T 3a79_B 100 QDLEYLDVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKF-RQLDLLPVAHL-HLS-C 173 (562)
T ss_dssp TTCCEEECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBC-CTTTTGGGTTS-CEE-E
T ss_pred CCCCEEECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcc-ccCchhhhhhc-eee-E
Confidence 9999999999999999987 89999999999998 77654 7899999999995433222 12334445555 234 5
Q ss_pred eEEecccC--CCChhHHHHh----------------------hccCCCCCCcEEEEecCCC-------------------
Q 003037 617 LKIQGLGN--VRDADEAKSA----------------------ELEKKKNLLDLVLSFDGGQ------------------- 653 (854)
Q Consensus 617 L~i~~l~~--~~~~~~~~~~----------------------~l~~~~~L~~L~l~~~~~~------------------- 653 (854)
|.+.+... .......... .+..+++|+.|+++++...
T Consensus 174 L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~ 253 (562)
T 3a79_B 174 ILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLN 253 (562)
T ss_dssp EEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEE
T ss_pred EEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceE
Confidence 55554211 0000000000 1113445666666654100
Q ss_pred ------CCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCchh-----------------------------------
Q 003037 654 ------RIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWI----------------------------------- 692 (854)
Q Consensus 654 ------~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~----------------------------------- 692 (854)
..........++.+. .++|++|++ .++...+.+|.++
T Consensus 254 L~L~~~~l~~~~~~~~~~~~~-~~~L~~L~l-~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~ 331 (562)
T 3a79_B 254 VTLQHIETTWKCSVKLFQFFW-PRPVEYLNI-YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEM 331 (562)
T ss_dssp EEEEEEEECHHHHHHHHHHHT-TSSEEEEEE-EEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTC
T ss_pred EEecCCcCcHHHHHHHHHhhh-cccccEEEE-eccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccC
Confidence 000000011111111 236777777 4443332244433
Q ss_pred ------------------hcccCccEEEEecccCCCCCCC-CCCCCCCCEEEEcCCCCceEeCc---cccCCCCCCCCcc
Q 003037 693 ------------------VSLNKLKKLVLYQFYLCDTMPP-LGKLPSLEILEIRGNWNVKRVGD---EFLGVGGGDHLHG 750 (854)
Q Consensus 693 ------------------~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~~l~~i~~---~~~~~~~~~~l~~ 750 (854)
..+++|+.|++++|.+.+.+|. ++.+++|+.|++++|. +..++. .+.....+..+..
T Consensus 332 ~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l 410 (562)
T 3a79_B 332 NIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDV 410 (562)
T ss_dssp CCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEEC
T ss_pred cceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEEC
Confidence 4567788888888877765543 7888888888888876 554432 2222222222211
Q ss_pred ccC-------CccccCCCccceeeccccccccccccCCCccccCC-CccceeeecccccCcCCCcCCCCCCCcCEEEEec
Q 003037 751 IST-------SSSVIAFPKLKQVLFYNICHWEEWDFGKGDSITIM-PQLKKLEFERCTELKSVPEKLLRSTTLEELSIVE 822 (854)
Q Consensus 751 ~~~-------~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 822 (854)
..+ ......+++|+.|+++++. +.... ...+ ++|+.|++++| .+..+|..+..+++|++|++++
T Consensus 411 ~~N~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~------~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~ 482 (562)
T 3a79_B 411 SLNSLNSHAYDRTCAWAESILVLNLSSNM-LTGSV------FRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVAS 482 (562)
T ss_dssp TTSCCBSCCSSCCCCCCTTCCEEECCSSC-CCGGG------GSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCS
T ss_pred CCCcCCCccChhhhcCcccCCEEECCCCC-CCcch------hhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCC
Confidence 111 1113345777777777642 22111 1134 68999999998 7889999888999999999999
Q ss_pred Cc
Q 003037 823 CP 824 (854)
Q Consensus 823 c~ 824 (854)
|.
T Consensus 483 N~ 484 (562)
T 3a79_B 483 NQ 484 (562)
T ss_dssp SC
T ss_pred CC
Confidence 85
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.79 E-value=2.1e-19 Score=192.63 Aligned_cols=220 Identities=23% Similarity=0.258 Sum_probs=174.4
Q ss_pred cCceEEEEeeeCCCC-CCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccccccccc
Q 003037 458 VEKVRHSMLKLGYDS-FPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIK 536 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~ 536 (854)
...++.+.+.++... +|..+..+++|++|.+.+|. +.. +|..+.++++|++|+|++|. +..+|..++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~---l~~-lp~~~~~l~~L~~L~Ls~n~--------l~~lp~~l~ 147 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG---LME-LPDTMQQFAGLETLTLARNP--------LRALPASIA 147 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC---CCC-CCSCGGGGTTCSEEEEESCC--------CCCCCGGGG
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCC---ccc-hhHHHhccCCCCEEECCCCc--------cccCcHHHh
Confidence 467888888888765 77788899999999999998 554 67789999999999999999 889999999
Q ss_pred ccCCCceeeecCCC-Ccccchhhhc---------CCCCcEEeecCcccccccccccccCCCCcccCceeecCCCCCCccc
Q 003037 537 KLIHLRFLKLVWLD-IEELPETCCE---------LFNVQTLEVLDCRSFRRLPQGFGKLVNLRNLSKFIVSRSGGSKLED 606 (854)
Q Consensus 537 ~L~~L~~L~L~~~~-i~~lP~~i~~---------L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~ 606 (854)
++.+|++|++++|. +..+|..++. +++|++|++++|. +..+|..++++++|++|... .+
T Consensus 148 ~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~---~N------- 216 (328)
T 4fcg_A 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIR---NS------- 216 (328)
T ss_dssp GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEE---SS-------
T ss_pred cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEcc---CC-------
Confidence 99999999999976 6688887765 9999999999998 78999999998888888221 11
Q ss_pred ccccccCCceeEEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCC
Q 003037 607 LRQLKHLRGSLKIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGIS 686 (854)
Q Consensus 607 L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 686 (854)
.+.. .+..+..+++|+.|++++|. ....++..+..+++|+.|++ .++....
T Consensus 217 --------------~l~~-------l~~~l~~l~~L~~L~Ls~n~-------~~~~~p~~~~~l~~L~~L~L-~~n~~~~ 267 (328)
T 4fcg_A 217 --------------PLSA-------LGPAIHHLPKLEELDLRGCT-------ALRNYPPIFGGRAPLKRLIL-KDCSNLL 267 (328)
T ss_dssp --------------CCCC-------CCGGGGGCTTCCEEECTTCT-------TCCBCCCCTTCCCCCCEEEC-TTCTTCC
T ss_pred --------------CCCc-------CchhhccCCCCCEEECcCCc-------chhhhHHHhcCCCCCCEEEC-CCCCchh
Confidence 1111 11235667788888888761 22334556777888999999 6655555
Q ss_pred CCCchhhcccCccEEEEecccCCCCCCC-CCCCCCCCEEEEcCC
Q 003037 687 GWPSWIVSLNKLKKLVLYQFYLCDTMPP-LGKLPSLEILEIRGN 729 (854)
Q Consensus 687 ~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~ 729 (854)
.+|.++..+++|+.|+|++|...+.+|. ++.+++|+.+.+..+
T Consensus 268 ~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp BCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred hcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 5888888899999999999888887776 888899888888754
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.78 E-value=2.4e-18 Score=185.20 Aligned_cols=273 Identities=19% Similarity=0.175 Sum_probs=196.6
Q ss_pred cCceEEEEeeeCCCC--CCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccc
Q 003037 458 VEKVRHSMLKLGYDS--FPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEI 535 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~--~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i 535 (854)
+..++.+.+..+... .+..+..+++|++|.+.+|. +....|..|.++++|++|++++|. +..+|..+
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~--------l~~l~~~~ 121 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK---ISKIHEKAFSPLRKLQKLYISKNH--------LVEIPPNL 121 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC---CCEECGGGSTTCTTCCEEECCSSC--------CCSCCSSC
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc---cCccCHhHhhCcCCCCEEECCCCc--------CCccCccc
Confidence 468899999988765 24578899999999999998 666668889999999999999999 88999887
Q ss_pred cccCCCceeeecCCCCcccchh-hhcCCCCcEEeecCccccc---ccccccccCCCCcccCceeecCCCCCCcccccccc
Q 003037 536 KKLIHLRFLKLVWLDIEELPET-CCELFNVQTLEVLDCRSFR---RLPQGFGKLVNLRNLSKFIVSRSGGSKLEDLRQLK 611 (854)
Q Consensus 536 ~~L~~L~~L~L~~~~i~~lP~~-i~~L~~L~~L~l~~~~~l~---~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~ 611 (854)
. .+|++|++++|.++.+|.. +.++++|++|++++|. +. ..|..+..+ +|++|... .+ . +.
T Consensus 122 ~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~---~n---~------l~ 185 (332)
T 2ft3_A 122 P--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRIS---EA---K------LT 185 (332)
T ss_dssp C--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCC---SS---B------CS
T ss_pred c--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECc---CC---C------CC
Confidence 6 8999999999999998864 8899999999999998 54 345556655 66666221 11 0 01
Q ss_pred cCCceeEEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCch
Q 003037 612 HLRGSLKIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSW 691 (854)
Q Consensus 612 ~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~ 691 (854)
.+. ..+ .++|+.|+++++.. ....+..+..+++|+.|++ +++......|.+
T Consensus 186 ------------~l~-------~~~--~~~L~~L~l~~n~i-------~~~~~~~l~~l~~L~~L~L-~~N~l~~~~~~~ 236 (332)
T 2ft3_A 186 ------------GIP-------KDL--PETLNELHLDHNKI-------QAIELEDLLRYSKLYRLGL-GHNQIRMIENGS 236 (332)
T ss_dssp ------------SCC-------SSS--CSSCSCCBCCSSCC-------CCCCTTSSTTCTTCSCCBC-CSSCCCCCCTTG
T ss_pred ------------ccC-------ccc--cCCCCEEECCCCcC-------CccCHHHhcCCCCCCEEEC-CCCcCCcCChhH
Confidence 000 011 25788888887721 1112345677899999999 666555524557
Q ss_pred hhcccCccEEEEecccCCCCCCCCCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCCCccceeecccc
Q 003037 692 IVSLNKLKKLVLYQFYLCDTMPPLGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLKQVLFYNI 771 (854)
Q Consensus 692 ~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 771 (854)
+..+++|+.|+|++|.+......++.+++|+.|++++|. +..++...+.... ....+++|+.|.+.++
T Consensus 237 ~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~-----------~~~~~~~l~~L~l~~N 304 (332)
T 2ft3_A 237 LSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVG-----------FGVKRAYYNGISLFNN 304 (332)
T ss_dssp GGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSS-----------CCSSSCCBSEEECCSS
T ss_pred hhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCC-CCccChhHccccc-----------cccccccccceEeecC
Confidence 889999999999999876433448899999999999997 7777665432211 0123788999999985
Q ss_pred ccccccccCCCccccCCCccceeeecccc
Q 003037 772 CHWEEWDFGKGDSITIMPQLKKLEFERCT 800 (854)
Q Consensus 772 ~~l~~~~~~~~~~~~~l~~L~~L~l~~c~ 800 (854)
+ +..+.. .+..+..+++|+.|++++|.
T Consensus 305 ~-~~~~~~-~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 305 P-VPYWEV-QPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp S-SCGGGS-CGGGGTTBCCSTTEEC----
T ss_pred c-cccccc-Ccccccccchhhhhhccccc
Confidence 4 332222 22356689999999999874
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.77 E-value=5e-18 Score=182.53 Aligned_cols=273 Identities=14% Similarity=0.136 Sum_probs=197.7
Q ss_pred cCceEEEEeeeCCCC-CC-cccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccc
Q 003037 458 VEKVRHSMLKLGYDS-FP-DSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEI 535 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~-~~-~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i 535 (854)
+..++.+.+..+... .+ ..+..+++|++|.+.+|. +....|..|.++++|++|++++|. +..+|..+
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~Ls~n~--------l~~l~~~~ 119 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK---ISKISPGAFAPLVKLERLYLSKNQ--------LKELPEKM 119 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC---CCCBCTTTTTTCTTCCEEECCSSC--------CSBCCSSC
T ss_pred CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc---CCeeCHHHhcCCCCCCEEECCCCc--------CCccChhh
Confidence 567899999888765 33 368899999999999998 666668889999999999999999 88999877
Q ss_pred cccCCCceeeecCCCCcccch-hhhcCCCCcEEeecCccccc---ccccccccCCCCcccCceeecCCCCCCcccccccc
Q 003037 536 KKLIHLRFLKLVWLDIEELPE-TCCELFNVQTLEVLDCRSFR---RLPQGFGKLVNLRNLSKFIVSRSGGSKLEDLRQLK 611 (854)
Q Consensus 536 ~~L~~L~~L~L~~~~i~~lP~-~i~~L~~L~~L~l~~~~~l~---~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~ 611 (854)
. .+|++|++++|.++.+|. .+.++++|++|++++|. +. ..|..+..+++|++|.. ..+. + .
T Consensus 120 ~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l---~~n~---l------~ 184 (330)
T 1xku_A 120 P--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRI---ADTN---I------T 184 (330)
T ss_dssp C--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEEC---CSSC---C------C
T ss_pred c--ccccEEECCCCcccccCHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEEC---CCCc---c------c
Confidence 6 799999999999998876 58999999999999998 44 44566777888887722 1110 1 0
Q ss_pred cCCceeEEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCch
Q 003037 612 HLRGSLKIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSW 691 (854)
Q Consensus 612 ~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~ 691 (854)
.+ . ..+ .++|+.|+++.+. .....+..+..+++|+.|++ +++......|.+
T Consensus 185 ~l------------~-------~~~--~~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~L-s~n~l~~~~~~~ 235 (330)
T 1xku_A 185 TI------------P-------QGL--PPSLTELHLDGNK-------ITKVDAASLKGLNNLAKLGL-SFNSISAVDNGS 235 (330)
T ss_dssp SC------------C-------SSC--CTTCSEEECTTSC-------CCEECTGGGTTCTTCCEEEC-CSSCCCEECTTT
T ss_pred cC------------C-------ccc--cccCCEEECCCCc-------CCccCHHHhcCCCCCCEEEC-CCCcCceeChhh
Confidence 00 0 001 2578888887761 11122456677889999999 655544424557
Q ss_pred hhcccCccEEEEecccCCCCCCCCCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCCCccceeecccc
Q 003037 692 IVSLNKLKKLVLYQFYLCDTMPPLGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLKQVLFYNI 771 (854)
Q Consensus 692 ~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 771 (854)
+..+++|+.|+|++|.+......+..+++|++|+|++|. +..++...+.... ....++.|+.|.+.+.
T Consensus 236 ~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~-----------~~~~~~~l~~l~l~~N 303 (330)
T 1xku_A 236 LANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPG-----------YNTKKASYSGVSLFSN 303 (330)
T ss_dssp GGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSS-----------CCTTSCCCSEEECCSS
T ss_pred ccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCc-CCccChhhcCCcc-----------cccccccccceEeecC
Confidence 889999999999999877544458899999999999997 7777765442211 0124678899999885
Q ss_pred ccccccccCCCccccCCCccceeeeccc
Q 003037 772 CHWEEWDFGKGDSITIMPQLKKLEFERC 799 (854)
Q Consensus 772 ~~l~~~~~~~~~~~~~l~~L~~L~l~~c 799 (854)
+ +..+.. .+..+..+++|+.+++++|
T Consensus 304 ~-~~~~~i-~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 304 P-VQYWEI-QPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp S-SCGGGS-CGGGGTTCCCGGGEEC---
T ss_pred c-cccccc-CccccccccceeEEEeccc
Confidence 4 333332 2235667889999999887
No 50
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=4.3e-18 Score=196.37 Aligned_cols=255 Identities=20% Similarity=0.228 Sum_probs=181.2
Q ss_pred ceEEEEeeeCCCC-CCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccccccccccc
Q 003037 460 KVRHSMLKLGYDS-FPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKL 538 (854)
Q Consensus 460 ~~r~l~l~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L 538 (854)
.++.+.+.++... +|..+. ++|++|.+.+|. +.. +|. .+++|++|+|++|. +..+|. .+
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~---l~~-lp~---~l~~L~~L~Ls~N~--------l~~lp~---~l 100 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNN---LTS-LPA---LPPELRTLEVSGNQ--------LTSLPV---LP 100 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCC---CSC-CCC---CCTTCCEEEECSCC--------CSCCCC---CC
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCC---CCC-CCC---cCCCCCEEEcCCCc--------CCcCCC---CC
Confidence 4666777766654 444444 789999999987 444 444 57899999999998 888887 77
Q ss_pred CCCceeeecCCCCcccchhhhcCCCCcEEeecCcccccccccccccCCCCcccCceeecCCCCCCcccccccccCCceeE
Q 003037 539 IHLRFLKLVWLDIEELPETCCELFNVQTLEVLDCRSFRRLPQGFGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLK 618 (854)
Q Consensus 539 ~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~ 618 (854)
.+|++|+|++|.++.+|. .+.+|++|++++|. +..+|.. +++|++|.. +.+. +..
T Consensus 101 ~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~L---s~N~---l~~------------ 155 (622)
T 3g06_A 101 PGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSV---SDNQ---LAS------------ 155 (622)
T ss_dssp TTCCEEEECSCCCCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEEC---CSSC---CSC------------
T ss_pred CCCCEEECcCCcCCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEEC---cCCc---CCC------------
Confidence 899999999999999987 67889999999998 8888874 366776622 1110 000
Q ss_pred EecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCchhhcccCc
Q 003037 619 IQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWIVSLNKL 698 (854)
Q Consensus 619 i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~L 698 (854)
+. ..+++|+.|+++.|. ...++ ..+++|+.|++ +++.... +|.. +++|
T Consensus 156 ------l~----------~~~~~L~~L~L~~N~--------l~~l~---~~~~~L~~L~L-s~N~l~~-l~~~---~~~L 203 (622)
T 3g06_A 156 ------LP----------ALPSELCKLWAYNNQ--------LTSLP---MLPSGLQELSV-SDNQLAS-LPTL---PSEL 203 (622)
T ss_dssp ------CC----------CCCTTCCEEECCSSC--------CSCCC---CCCTTCCEEEC-CSSCCSC-CCCC---CTTC
T ss_pred ------cC----------CccCCCCEEECCCCC--------CCCCc---ccCCCCcEEEC-CCCCCCC-CCCc---cchh
Confidence 00 023466777777661 11111 33578888888 5555444 6653 5788
Q ss_pred cEEEEecccCCCCCCCCCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCCCccceeeccccccccccc
Q 003037 699 KKLVLYQFYLCDTMPPLGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLKQVLFYNICHWEEWD 778 (854)
Q Consensus 699 ~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 778 (854)
+.|++++|.+.. +|. .+++|+.|+|++|. +..+|. .+++|+.|+++++ .+..++
T Consensus 204 ~~L~L~~N~l~~-l~~--~~~~L~~L~Ls~N~-L~~lp~---------------------~l~~L~~L~Ls~N-~L~~lp 257 (622)
T 3g06_A 204 YKLWAYNNRLTS-LPA--LPSGLKELIVSGNR-LTSLPV---------------------LPSELKELMVSGN-RLTSLP 257 (622)
T ss_dssp CEEECCSSCCSS-CCC--CCTTCCEEECCSSC-CSCCCC---------------------CCTTCCEEECCSS-CCSCCC
T ss_pred hEEECcCCcccc-cCC--CCCCCCEEEccCCc-cCcCCC---------------------CCCcCcEEECCCC-CCCcCC
Confidence 889998886653 443 35789999998886 555541 4678999998884 555554
Q ss_pred cCCCccccCCCccceeeecccccCcCCCcCCCCCCCcCEEEEecCcc
Q 003037 779 FGKGDSITIMPQLKKLEFERCTELKSVPEKLLRSTTLEELSIVECPI 825 (854)
Q Consensus 779 ~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 825 (854)
. .+++|+.|++++| .+..+|..+..+++|+.|+|++|+-
T Consensus 258 ~-------~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 258 M-------LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp C-------CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred c-------ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCC
Confidence 3 4788999999988 6778898888899999999999874
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.76 E-value=7.6e-19 Score=190.83 Aligned_cols=257 Identities=18% Similarity=0.164 Sum_probs=158.1
Q ss_pred CCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccc-cccccccCCCceeeecCCCC
Q 003037 473 FPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEI-PKEIKKLIHLRFLKLVWLDI 551 (854)
Q Consensus 473 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~l-P~~i~~L~~L~~L~L~~~~i 551 (854)
+|..+. ++|++|++.++. +..+.+..|.++++|++|++++|. +..+ |..++++.+|++|++++|.+
T Consensus 46 iP~~~~--~~L~~L~l~~n~---i~~~~~~~~~~l~~L~~L~L~~n~--------l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 46 IPSGLT--EAVKSLDLSNNR---ITYISNSDLQRCVNLQALVLTSNG--------INTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp CCTTCC--TTCCEEECTTSC---CCEECTTTTTTCTTCCEEECTTSC--------CCEECTTTTTTCTTCCEEECCSSCC
T ss_pred cccccc--ccCcEEECCCCc---CcccCHHHhccCCCCCEEECCCCc--------cCccCHhhcCCCCCCCEEECCCCcC
Confidence 444333 588999998887 555455578889999999999988 7766 45688899999999999999
Q ss_pred cccchh-hhcCCCCcEEeecCccccccccc--ccccCCCCcccCceeecCCCCCCcccccccccCCceeEEecccCCCCh
Q 003037 552 EELPET-CCELFNVQTLEVLDCRSFRRLPQ--GFGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLGNVRDA 628 (854)
Q Consensus 552 ~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~--~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~ 628 (854)
+.+|.. ++++++|++|++++|. +..+|. .+..+++|++|...... . +.
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~-----------~------------~~----- 163 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMD-----------T------------FT----- 163 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESS-----------S------------CC-----
T ss_pred CcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCc-----------c------------cc-----
Confidence 888876 7889999999999887 777776 46667777666221110 0 00
Q ss_pred hHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCchh-hcccCccEEEEeccc
Q 003037 629 DEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWI-VSLNKLKKLVLYQFY 707 (854)
Q Consensus 629 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~-~~l~~L~~L~L~~~~ 707 (854)
......+.++++|+.|+++.+. .....+..+..+++|+.|++ .++.... +|..+ ..+++|+.|++++|.
T Consensus 164 -~~~~~~~~~l~~L~~L~l~~n~-------l~~~~~~~l~~l~~L~~L~l-~~n~l~~-~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 164 -KIQRKDFAGLTFLEELEIDASD-------LQSYEPKSLKSIQNVSHLIL-HMKQHIL-LLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp -EECTTTTTTCCEEEEEEEEETT-------CCEECTTTTTTCSEEEEEEE-ECSCSTT-HHHHHHHHTTTEEEEEEESCB
T ss_pred -ccCHHHccCCCCCCEEECCCCC-------cCccCHHHHhccccCCeecC-CCCcccc-chhhhhhhcccccEEECCCCc
Confidence 0011234456667777777661 11112344555566666666 3333322 44332 245666666666665
Q ss_pred CCCCCCC----CCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCCCccceeeccccccccccccCCCc
Q 003037 708 LCDTMPP----LGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLKQVLFYNICHWEEWDFGKGD 783 (854)
Q Consensus 708 ~~~~l~~----l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 783 (854)
+....+. ....+.++.++|.++. +.+ ..+..++ .
T Consensus 234 l~~~~~~~l~~~~~~~~l~~l~L~~~~-------------------------------------l~~-~~l~~l~----~ 271 (353)
T 2z80_A 234 LDTFHFSELSTGETNSLIKKFTFRNVK-------------------------------------ITD-ESLFQVM----K 271 (353)
T ss_dssp CTTCCCC------CCCCCCEEEEESCB-------------------------------------CCH-HHHHHHH----H
T ss_pred cccccccccccccccchhhcccccccc-------------------------------------ccC-cchhhhH----H
Confidence 4432111 1123333334333322 111 0111111 1
Q ss_pred cccCCCccceeeecccccCcCCCcCC-CCCCCcCEEEEecCc
Q 003037 784 SITIMPQLKKLEFERCTELKSVPEKL-LRSTTLEELSIVECP 824 (854)
Q Consensus 784 ~~~~l~~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~c~ 824 (854)
.+..+++|++|++++| .+..+|..+ ..+++|++|++++||
T Consensus 272 ~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 272 LLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred HHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 3446889999999988 677888775 788999999998886
No 52
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.75 E-value=9.2e-18 Score=187.87 Aligned_cols=302 Identities=18% Similarity=0.200 Sum_probs=174.3
Q ss_pred cCceEEEEeeeCCCCCCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccc
Q 003037 458 VEKVRHSMLKLGYDSFPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKK 537 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~ 537 (854)
+.+++++.+..+.....+. .+++|++|.+.+|. +.+ ++. ..++|++|++++|. +..+| .+++
T Consensus 90 ~~~L~~L~l~~n~l~~lp~--~~~~L~~L~l~~n~---l~~-l~~---~~~~L~~L~L~~n~--------l~~lp-~~~~ 151 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPE--LPQSLKSLLVDNNN---LKA-LSD---LPPLLEYLGVSNNQ--------LEKLP-ELQN 151 (454)
T ss_dssp CTTCSEEECCSSCCSSCCC--CCTTCCEEECCSSC---CSC-CCS---CCTTCCEEECCSSC--------CSSCC-CCTT
T ss_pred cCCCCEEEccCCcCCcccc--ccCCCcEEECCCCc---cCc-ccC---CCCCCCEEECcCCC--------CCCCc-ccCC
Confidence 5678888888776553222 24788899888887 333 222 12688899999888 77788 5888
Q ss_pred cCCCceeeecCCCCcccchhhhcCCCCcEEeecCcccccccccccccCCCCcccCceeecCCCCCCcccccccccCCcee
Q 003037 538 LIHLRFLKLVWLDIEELPETCCELFNVQTLEVLDCRSFRRLPQGFGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSL 617 (854)
Q Consensus 538 L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L 617 (854)
+.+|++|++++|.++.+|..+ .+|++|++++|. +..+| +++.+++|++|.. ..+....+.... .+|+ .|
T Consensus 152 l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l---~~N~l~~l~~~~--~~L~-~L 220 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYA---DNNSLKKLPDLP--LSLE-SI 220 (454)
T ss_dssp CTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEEC---CSSCCSSCCCCC--TTCC-EE
T ss_pred CCCCCEEECCCCcCcccCCCc---ccccEEECcCCc-CCcCc-cccCCCCCCEEEC---CCCcCCcCCCCc--Cccc-EE
Confidence 999999999999888888654 588899999887 77787 5788888887733 222211111111 1233 44
Q ss_pred EEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCchhhcccC
Q 003037 618 KIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWIVSLNK 697 (854)
Q Consensus 618 ~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~ 697 (854)
.+.+.. +.. .+ .+..+++|+.|+++.+.. ..+++ .+++|+.|++ .++.... +|.+ +++
T Consensus 221 ~l~~n~-l~~----lp-~~~~l~~L~~L~l~~N~l--------~~l~~---~~~~L~~L~l-~~N~l~~-l~~~---~~~ 278 (454)
T 1jl5_A 221 VAGNNI-LEE----LP-ELQNLPFLTTIYADNNLL--------KTLPD---LPPSLEALNV-RDNYLTD-LPEL---PQS 278 (454)
T ss_dssp ECCSSC-CSS----CC-CCTTCTTCCEEECCSSCC--------SSCCS---CCTTCCEEEC-CSSCCSC-CCCC---CTT
T ss_pred ECcCCc-CCc----cc-ccCCCCCCCEEECCCCcC--------Ccccc---cccccCEEEC-CCCcccc-cCcc---cCc
Confidence 444321 111 11 266778888888887621 11111 2367888888 5555444 6653 367
Q ss_pred ccEEEEecccCCCCCCCCCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCCc--cccCCCccceeecccccccc
Q 003037 698 LKKLVLYQFYLCDTMPPLGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSS--SVIAFPKLKQVLFYNICHWE 775 (854)
Q Consensus 698 L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~--~~~~~~~L~~L~l~~~~~l~ 775 (854)
|+.|++++|.+.+ +|.+ .++|+.|++++|. +..++... ..+..+....+.. -...+++|+.|+++++ .+.
T Consensus 279 L~~L~ls~N~l~~-l~~~--~~~L~~L~l~~N~-l~~i~~~~---~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N-~l~ 350 (454)
T 1jl5_A 279 LTFLDVSENIFSG-LSEL--PPNLYYLNASSNE-IRSLCDLP---PSLEELNVSNNKLIELPALPPRLERLIASFN-HLA 350 (454)
T ss_dssp CCEEECCSSCCSE-ESCC--CTTCCEEECCSSC-CSEECCCC---TTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCS
T ss_pred CCEEECcCCccCc-ccCc--CCcCCEEECcCCc-CCcccCCc---CcCCEEECCCCccccccccCCcCCEEECCCC-ccc
Confidence 8888888876544 2221 1567777777665 33343210 0111111111000 0113578888888874 444
Q ss_pred ccccCCCccccCCCccceeeecccccCc--CCCcCCCCC-------------CCcCEEEEecCcc
Q 003037 776 EWDFGKGDSITIMPQLKKLEFERCTELK--SVPEKLLRS-------------TTLEELSIVECPI 825 (854)
Q Consensus 776 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~--~lp~~l~~l-------------~~L~~L~l~~c~~ 825 (854)
.++. .+++|++|++++|+..+ .+|..+..+ ++|+.|++++++-
T Consensus 351 ~lp~-------~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 351 EVPE-------LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL 408 (454)
T ss_dssp CCCC-------CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------------
T ss_pred cccc-------hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcC
Confidence 4433 36889999998886444 567777766 7888888888753
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.75 E-value=1.2e-17 Score=177.51 Aligned_cols=225 Identities=14% Similarity=0.161 Sum_probs=124.0
Q ss_pred CcccEEEecCCCCcccccccccccccc-ccccCCCceeeecCCCCccc---chhhhcCCCCcEEeecCcccccccccccc
Q 003037 508 TCLRTLKITGISGEKRYFRIIVEIPKE-IKKLIHLRFLKLVWLDIEEL---PETCCELFNVQTLEVLDCRSFRRLPQGFG 583 (854)
Q Consensus 508 ~~Lr~L~L~~~~~~~~~~~~i~~lP~~-i~~L~~L~~L~L~~~~i~~l---P~~i~~L~~L~~L~l~~~~~l~~lp~~i~ 583 (854)
++|++|+|++|. +..+|.. +.++++|++|+|++|.++.+ |..+..+++|++|++++|. +..+|..+.
T Consensus 28 ~~l~~L~L~~n~--------l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~ 98 (306)
T 2z66_A 28 SSATRLELESNK--------LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFL 98 (306)
T ss_dssp TTCCEEECCSSC--------CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEE
T ss_pred CCCCEEECCCCc--------cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcC
Confidence 466677777666 6666654 46667777777777766544 4556666777777777666 566666666
Q ss_pred cCCCCcccCceeecCCCCCCcccccccccCCceeEEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHH
Q 003037 584 KLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAI 663 (854)
Q Consensus 584 ~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 663 (854)
.+++|++|.. ..+ .+..+..
T Consensus 99 ~l~~L~~L~l---~~n------------------~l~~~~~--------------------------------------- 118 (306)
T 2z66_A 99 GLEQLEHLDF---QHS------------------NLKQMSE--------------------------------------- 118 (306)
T ss_dssp TCTTCCEEEC---TTS------------------EEESSTT---------------------------------------
T ss_pred CCCCCCEEEC---CCC------------------ccccccc---------------------------------------
Confidence 6666655511 000 0000000
Q ss_pred hhhCCCCCCCCeEEEeccCCCCCCCCchhhcccCccEEEEecccCCC-CCC-CCCCCCCCCEEEEcCCCCceEeCccccC
Q 003037 664 IEALQPPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCD-TMP-PLGKLPSLEILEIRGNWNVKRVGDEFLG 741 (854)
Q Consensus 664 ~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~-~l~-~l~~L~~L~~L~L~~~~~l~~i~~~~~~ 741 (854)
...+..+++|+.|++ .++......|..+..+++|+.|++++|.+.+ .+| .++.+++|++|+|++|. +..++...
T Consensus 119 ~~~~~~l~~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-- 194 (306)
T 2z66_A 119 FSVFLSLRNLIYLDI-SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTA-- 194 (306)
T ss_dssp TTTTTTCTTCCEEEC-TTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTT--
T ss_pred chhhhhccCCCEEEC-CCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC-cCCcCHHH--
Confidence 011222334444444 3332222234445556666666666665543 223 35666666666666665 34432221
Q ss_pred CCCCCCCccccCCccccCCCccceeeccccccccccccCCCccccCCCccceeeecccccCcCCCcCCCCCC-CcCEEEE
Q 003037 742 VGGGDHLHGISTSSSVIAFPKLKQVLFYNICHWEEWDFGKGDSITIMPQLKKLEFERCTELKSVPEKLLRST-TLEELSI 820 (854)
Q Consensus 742 ~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~-~L~~L~l 820 (854)
...+++|+.|+++++ .+..++ ...+..+++|+.|++++|......|..+..++ +|++|++
T Consensus 195 ---------------~~~l~~L~~L~L~~N-~l~~~~---~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L 255 (306)
T 2z66_A 195 ---------------FNSLSSLQVLNMSHN-NFFSLD---TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 255 (306)
T ss_dssp ---------------TTTCTTCCEEECTTS-CCSBCC---SGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEEC
T ss_pred ---------------hcCCCCCCEEECCCC-ccCccC---hhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEc
Confidence 124566666666663 222222 11344678888888888865555677777774 8888888
Q ss_pred ecCc
Q 003037 821 VECP 824 (854)
Q Consensus 821 ~~c~ 824 (854)
++++
T Consensus 256 ~~N~ 259 (306)
T 2z66_A 256 TQND 259 (306)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 8775
No 54
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.73 E-value=2.5e-17 Score=194.08 Aligned_cols=107 Identities=21% Similarity=0.254 Sum_probs=92.6
Q ss_pred CCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccc-cccccCCCceeeecCCCC
Q 003037 473 FPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPK-EIKKLIHLRFLKLVWLDI 551 (854)
Q Consensus 473 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~-~i~~L~~L~~L~L~~~~i 551 (854)
+|..+ .+.+++|++++|. +..+.+..|.++++|++|+|++|. +..+|. .|++|.+|++|+|++|.|
T Consensus 46 vP~~l--p~~~~~LdLs~N~---i~~l~~~~f~~l~~L~~L~Ls~N~--------i~~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 46 IPDNL--PFSTKNLDLSFNP---LRHLGSYSFFSFPELQVLDLSRCE--------IQTIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp CCSSS--CTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECTTCC--------CCEECTTTTTTCTTCCEEECTTCCC
T ss_pred cCCCC--CcCCCEEEeeCCC---CCCCCHHHHhCCCCCCEEECCCCc--------CCCcChhHhcCCCCCCEEEccCCcC
Confidence 55544 3579999999998 666667789999999999999999 888865 689999999999999999
Q ss_pred cccch-hhhcCCCCcEEeecCcccccccccc-cccCCCCcccCc
Q 003037 552 EELPE-TCCELFNVQTLEVLDCRSFRRLPQG-FGKLVNLRNLSK 593 (854)
Q Consensus 552 ~~lP~-~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~~ 593 (854)
+.+|. .+.+|++|++|++++|. +..+|.. +++|++|++|..
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~L 155 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNV 155 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEEC
T ss_pred CCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeecc
Confidence 99986 57999999999999998 8888864 789999999843
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.73 E-value=8.2e-17 Score=180.97 Aligned_cols=87 Identities=21% Similarity=0.210 Sum_probs=47.8
Q ss_pred CCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccccc-ccccccCCCceeeecCCCCcccchh-h
Q 003037 481 KKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIP-KEIKKLIHLRFLKLVWLDIEELPET-C 558 (854)
Q Consensus 481 ~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP-~~i~~L~~L~~L~L~~~~i~~lP~~-i 558 (854)
+++++|.+.+|. +..+.+..|.++++|++|+|++|. +..++ ..+.++.+|++|+|++|.++.+|.. +
T Consensus 75 ~~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~Ls~n~--------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 143 (452)
T 3zyi_A 75 SNTRYLNLMENN---IQMIQADTFRHLHHLEVLQLGRNS--------IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAF 143 (452)
T ss_dssp TTCSEEECCSSC---CCEECTTTTTTCTTCCEEECCSSC--------CCEECTTTTTTCTTCCEEECCSSCCSBCCTTTS
T ss_pred CCccEEECcCCc---CceECHHHcCCCCCCCEEECCCCc--------cCCcChhhccCcccCCEEECCCCcCCccChhhh
Confidence 455666665555 334344555566666666666655 44443 4455566666666666665555543 4
Q ss_pred hcCCCCcEEeecCcccccccc
Q 003037 559 CELFNVQTLEVLDCRSFRRLP 579 (854)
Q Consensus 559 ~~L~~L~~L~l~~~~~l~~lp 579 (854)
..+++|++|++++|. +..+|
T Consensus 144 ~~l~~L~~L~L~~N~-l~~~~ 163 (452)
T 3zyi_A 144 EYLSKLRELWLRNNP-IESIP 163 (452)
T ss_dssp SSCTTCCEEECCSCC-CCEEC
T ss_pred cccCCCCEEECCCCC-cceeC
Confidence 555666666666555 44444
No 56
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.72 E-value=6.1e-18 Score=189.34 Aligned_cols=104 Identities=14% Similarity=0.144 Sum_probs=49.6
Q ss_pred cCceEEEEeeeCCCC-CCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcc-------------cEEEecCCCCccc
Q 003037 458 VEKVRHSMLKLGYDS-FPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCL-------------RTLKITGISGEKR 523 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~L-------------r~L~L~~~~~~~~ 523 (854)
...+|.+.+..+... +|..+.++++|++|.+.++. +.+.+|..++++++| +.|++++|.
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~---~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~---- 82 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSE---WERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG---- 82 (454)
T ss_dssp ------------------------CCHHHHHHHHHH---HHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC----
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCc---ccccCCcccccchhcchhhhhhhhccCCCEEEecCCc----
Confidence 345666666665543 66677778888888877766 444456666666654 777777776
Q ss_pred cccccccccccccccCCCceeeecCCCCcccchhhhcCCCCcEEeecCcccccccc
Q 003037 524 YFRIIVEIPKEIKKLIHLRFLKLVWLDIEELPETCCELFNVQTLEVLDCRSFRRLP 579 (854)
Q Consensus 524 ~~~~i~~lP~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp 579 (854)
+..+|.. ..+|++|++++|.++.+|.. +.+|++|++++|. +..+|
T Consensus 83 ----l~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~-l~~l~ 127 (454)
T 1jl5_A 83 ----LSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN-LKALS 127 (454)
T ss_dssp ----CSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC-CSCCC
T ss_pred ----cccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCc-cCccc
Confidence 6666552 25666666666666666643 2455555555554 44443
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.72 E-value=7.7e-17 Score=180.55 Aligned_cols=241 Identities=21% Similarity=0.266 Sum_probs=143.6
Q ss_pred ceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccccc-ccccccCCCceeeecCCCCcccc-hhhhc
Q 003037 483 LRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIP-KEIKKLIHLRFLKLVWLDIEELP-ETCCE 560 (854)
Q Consensus 483 Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP-~~i~~L~~L~~L~L~~~~i~~lP-~~i~~ 560 (854)
.+.+.+.+.. +.. +|..+ .++|++|+|++|. +..++ ..+.++.+|++|+|++|.++.++ ..+.+
T Consensus 45 ~~~v~c~~~~---l~~-iP~~~--~~~l~~L~L~~n~--------i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~ 110 (440)
T 3zyj_A 45 FSKVICVRKN---LRE-VPDGI--STNTRLLNLHENQ--------IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNG 110 (440)
T ss_dssp SCEEECCSCC---CSS-CCSCC--CTTCSEEECCSCC--------CCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTT
T ss_pred CCEEEeCCCC---cCc-CCCCC--CCCCcEEEccCCc--------CCeeCHHHhhCCCCCCEEECCCCcCCccChhhccC
Confidence 4566666655 444 45433 3688999999998 77765 67889999999999999988776 56888
Q ss_pred CCCCcEEeecCcccccccccc-cccCCCCcccCceeecCCCCCCcccccccccCCceeEEecccCCCChhHHHHhhccCC
Q 003037 561 LFNVQTLEVLDCRSFRRLPQG-FGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLGNVRDADEAKSAELEKK 639 (854)
Q Consensus 561 L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~ 639 (854)
+++|++|++++|. +..+|.+ +..+++|++|... .+ .+.. .....+..+
T Consensus 111 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~---~N---------------------~i~~------~~~~~~~~l 159 (440)
T 3zyj_A 111 LANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLR---NN---------------------PIES------IPSYAFNRI 159 (440)
T ss_dssp CSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECC---SC---------------------CCCE------ECTTTTTTC
T ss_pred CccCCEEECCCCc-CCeeCHhHhhccccCceeeCC---CC---------------------cccc------cCHHHhhhC
Confidence 9999999999987 7777763 6667777666211 00 0000 000123344
Q ss_pred CCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCC-chhhcccCccEEEEecccCCCCCCCCCCC
Q 003037 640 KNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWP-SWIVSLNKLKKLVLYQFYLCDTMPPLGKL 718 (854)
Q Consensus 640 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~l~~l~~L 718 (854)
++|+.|+++.+ .....+| ..+..+++|+.|+|++|.+. .+|.+..+
T Consensus 160 ~~L~~L~l~~~--------------------------------~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l 206 (440)
T 3zyj_A 160 PSLRRLDLGEL--------------------------------KRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPL 206 (440)
T ss_dssp TTCCEEECCCC--------------------------------TTCCEECTTTTTTCSSCCEEECTTSCCS-SCCCCTTC
T ss_pred cccCEeCCCCC--------------------------------CCcceeCcchhhcccccCeecCCCCcCc-cccccCCC
Confidence 44444444432 1111122 23455666666666666443 44556666
Q ss_pred CCCCEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCCCccceeeccccccccccccCCCccccCCCccceeeecc
Q 003037 719 PSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLKQVLFYNICHWEEWDFGKGDSITIMPQLKKLEFER 798 (854)
Q Consensus 719 ~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~ 798 (854)
++|+.|+|++|. +..++...+ ..+++|+.|++.++ .+..+. +..+..+++|+.|+|++
T Consensus 207 ~~L~~L~Ls~N~-l~~~~~~~~-----------------~~l~~L~~L~L~~n-~l~~~~---~~~~~~l~~L~~L~L~~ 264 (440)
T 3zyj_A 207 IKLDELDLSGNH-LSAIRPGSF-----------------QGLMHLQKLWMIQS-QIQVIE---RNAFDNLQSLVEINLAH 264 (440)
T ss_dssp SSCCEEECTTSC-CCEECTTTT-----------------TTCTTCCEEECTTC-CCCEEC---TTSSTTCTTCCEEECTT
T ss_pred cccCEEECCCCc-cCccChhhh-----------------ccCccCCEEECCCC-ceeEEC---hhhhcCCCCCCEEECCC
Confidence 666666666664 444432211 24566666666662 223222 22344667777777777
Q ss_pred cccCcCCCc-CCCCCCCcCEEEEecCc
Q 003037 799 CTELKSVPE-KLLRSTTLEELSIVECP 824 (854)
Q Consensus 799 c~~l~~lp~-~l~~l~~L~~L~l~~c~ 824 (854)
| .+..+|. .+..+++|+.|+|+++|
T Consensus 265 N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 265 N-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp S-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred C-CCCccChhHhccccCCCEEEcCCCC
Confidence 6 4555553 34567777777777665
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.71 E-value=1.6e-18 Score=185.01 Aligned_cols=134 Identities=11% Similarity=0.077 Sum_probs=63.6
Q ss_pred CCCCCCCeEEEeccCCCCCCCCchh-hcccCccEEEEecccCCCCCCCCCCCCCCCEEEEcCCCCceEeCccccCCCCCC
Q 003037 668 QPPPNIESLRIEYHYIGISGWPSWI-VSLNKLKKLVLYQFYLCDTMPPLGKLPSLEILEIRGNWNVKRVGDEFLGVGGGD 746 (854)
Q Consensus 668 ~~~~~L~~L~l~~~~~~~~~lp~~~-~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~ 746 (854)
..+++|+.|++ +++......|..+ ..+++|+.|+|++|.+.. ++....+++|+.|+|++|. +..++..+
T Consensus 141 ~~l~~L~~L~L-s~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~l~~L~~L~Ls~N~-l~~l~~~~------- 210 (317)
T 3o53_A 141 GCRSRVQYLDL-KLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQVVFAKLKTLDLSSNK-LAFMGPEF------- 210 (317)
T ss_dssp GGGSSEEEEEC-TTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EECCCCCTTCCEEECCSSC-CCEECGGG-------
T ss_pred hccCCCCEEEC-CCCCCCcccHHHHhhccCcCCEEECCCCcCcc-cccccccccCCEEECCCCc-CCcchhhh-------
Confidence 33455555555 3333222112222 245556666666554432 2333345566666666554 44444331
Q ss_pred CCccccCCccccCCCccceeeccccccccccccCCCccccCCCccceeeecccccC-cCCCcCCCCCCCcCEEEEecCcc
Q 003037 747 HLHGISTSSSVIAFPKLKQVLFYNICHWEEWDFGKGDSITIMPQLKKLEFERCTEL-KSVPEKLLRSTTLEELSIVECPI 825 (854)
Q Consensus 747 ~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l-~~lp~~l~~l~~L~~L~l~~c~~ 825 (854)
..+++|+.|+++++ .+..++. .+..+++|+.|++++|+.. ..+|..+..+++|+.|++.+|+.
T Consensus 211 -----------~~l~~L~~L~L~~N-~l~~l~~----~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~ 274 (317)
T 3o53_A 211 -----------QSAAGVTWISLRNN-KLVLIEK----ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKK 274 (317)
T ss_dssp -----------GGGTTCSEEECTTS-CCCEECT----TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -----------cccCcccEEECcCC-cccchhh----HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchh
Confidence 13555566655552 3333322 2334556666666655433 23444555555555555555544
Q ss_pred hH
Q 003037 826 LV 827 (854)
Q Consensus 826 l~ 827 (854)
+.
T Consensus 275 l~ 276 (317)
T 3o53_A 275 LT 276 (317)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.70 E-value=2.8e-17 Score=174.69 Aligned_cols=200 Identities=17% Similarity=0.158 Sum_probs=136.8
Q ss_pred CCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccc---cccccccCCCceeeecCCCCcccchh
Q 003037 481 KKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEI---PKEIKKLIHLRFLKLVWLDIEELPET 557 (854)
Q Consensus 481 ~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~l---P~~i~~L~~L~~L~L~~~~i~~lP~~ 557 (854)
++|++|.+.++. +..+.+..|.++++|++|+|++|. +..+ |..+..+.+|++|++++|.+..+|..
T Consensus 28 ~~l~~L~L~~n~---l~~i~~~~~~~l~~L~~L~L~~n~--------l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~ 96 (306)
T 2z66_A 28 SSATRLELESNK---LQSLPHGVFDKLTQLTKLSLSSNG--------LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 96 (306)
T ss_dssp TTCCEEECCSSC---CCCCCTTTTTTCTTCSEEECCSSC--------CCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE
T ss_pred CCCCEEECCCCc---cCccCHhHhhccccCCEEECCCCc--------cCcccCcccccccccccCEEECCCCccccChhh
Confidence 678888888887 555444557888888888888887 5544 56677788888888888888888888
Q ss_pred hhcCCCCcEEeecCccccccccc--ccccCCCCcccCceeecCCCCCCcccccccccCCceeEEecccCCCChhHHHHhh
Q 003037 558 CCELFNVQTLEVLDCRSFRRLPQ--GFGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLGNVRDADEAKSAE 635 (854)
Q Consensus 558 i~~L~~L~~L~l~~~~~l~~lp~--~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~ 635 (854)
+..+++|++|++++|. +..+|. .+..+++|++|.. ..+. + .......
T Consensus 97 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l---~~n~---l------------------------~~~~~~~ 145 (306)
T 2z66_A 97 FLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDI---SHTH---T------------------------RVAFNGI 145 (306)
T ss_dssp EETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEEC---TTSC---C------------------------EECSTTT
T ss_pred cCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEEC---CCCc---C------------------------Cccchhh
Confidence 8888888888888887 666664 5666777766621 1110 0 0011123
Q ss_pred ccCCCCCCcEEEEecCCCCCCCcchH-HHhhhCCCCCCCCeEEEeccCCCCCCCCchhhcccCccEEEEecccCCCCCC-
Q 003037 636 LEKKKNLLDLVLSFDGGQRIGDVNDK-AIIEALQPPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCDTMP- 713 (854)
Q Consensus 636 l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~- 713 (854)
+..+++|+.|+++++. ... ..+..+..+++|+.|++ +++......|.++..+++|+.|+|++|.+....+
T Consensus 146 ~~~l~~L~~L~l~~n~-------l~~~~~~~~~~~l~~L~~L~L-s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 217 (306)
T 2z66_A 146 FNGLSSLEVLKMAGNS-------FQENFLPDIFTELRNLTFLDL-SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 217 (306)
T ss_dssp TTTCTTCCEEECTTCE-------EGGGEECSCCTTCTTCCEEEC-TTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG
T ss_pred cccCcCCCEEECCCCc-------cccccchhHHhhCcCCCEEEC-CCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh
Confidence 4556677777776651 111 23455667788888888 5554444246677788888888888887655444
Q ss_pred CCCCCCCCCEEEEcCCC
Q 003037 714 PLGKLPSLEILEIRGNW 730 (854)
Q Consensus 714 ~l~~L~~L~~L~L~~~~ 730 (854)
.+..+++|+.|+|++|.
T Consensus 218 ~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 218 PYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp GGTTCTTCCEEECTTSC
T ss_pred hccCcccCCEeECCCCC
Confidence 36778888888888886
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.70 E-value=5.2e-17 Score=182.62 Aligned_cols=222 Identities=19% Similarity=0.149 Sum_probs=174.5
Q ss_pred cCceEEEEeeeCCCC--CCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccccccc-
Q 003037 458 VEKVRHSMLKLGYDS--FPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKE- 534 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~--~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~- 534 (854)
+.+++++.+..+... .+..+.++++|++|.+.+|. +..+.+..|.++++|++|+|++|. +..+|..
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~L~~n~--------l~~~~~~~ 142 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS---IRQIEVGAFNGLASLNTLELFDNW--------LTVIPSGA 142 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECCSSC--------CSBCCTTT
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc---cCCcChhhccCcccCCEEECCCCc--------CCccChhh
Confidence 578999999988876 35678899999999999998 666667889999999999999999 8888765
Q ss_pred ccccCCCceeeecCCCCcccch-hhhcCCCCcEEeecCcccccccccc-cccCCCCcccCceeecCCCCCCccccccccc
Q 003037 535 IKKLIHLRFLKLVWLDIEELPE-TCCELFNVQTLEVLDCRSFRRLPQG-FGKLVNLRNLSKFIVSRSGGSKLEDLRQLKH 612 (854)
Q Consensus 535 i~~L~~L~~L~L~~~~i~~lP~-~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~ 612 (854)
++++.+|++|+|++|.++.+|. .+.++++|++|++++|..+..+|.+ +..+++|++|.. ..+. +..
T Consensus 143 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L---~~n~---l~~------ 210 (452)
T 3zyi_A 143 FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL---GMCN---IKD------ 210 (452)
T ss_dssp SSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEEC---TTSC---CSS------
T ss_pred hcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEEC---CCCc---ccc------
Confidence 8899999999999999999886 6889999999999998778888874 677888877722 1111 110
Q ss_pred CCceeEEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCchh
Q 003037 613 LRGSLKIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWI 692 (854)
Q Consensus 613 L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~ 692 (854)
+ ..+..+++|+.|++++|. .....+..+..+++|+.|++ .++......|..+
T Consensus 211 ------------~--------~~~~~l~~L~~L~Ls~N~-------l~~~~~~~~~~l~~L~~L~L-~~n~l~~~~~~~~ 262 (452)
T 3zyi_A 211 ------------M--------PNLTPLVGLEELEMSGNH-------FPEIRPGSFHGLSSLKKLWV-MNSQVSLIERNAF 262 (452)
T ss_dssp ------------C--------CCCTTCTTCCEEECTTSC-------CSEECGGGGTTCTTCCEEEC-TTSCCCEECTTTT
T ss_pred ------------c--------ccccccccccEEECcCCc-------CcccCcccccCccCCCEEEe-CCCcCceECHHHh
Confidence 0 124566788888888771 12223456777889999999 6665554356778
Q ss_pred hcccCccEEEEecccCCCCCCC-CCCCCCCCEEEEcCCC
Q 003037 693 VSLNKLKKLVLYQFYLCDTMPP-LGKLPSLEILEIRGNW 730 (854)
Q Consensus 693 ~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~ 730 (854)
..+++|+.|+|++|.+....+. +..+++|+.|+|++|+
T Consensus 263 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 263 DGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred cCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 8899999999999987755444 7889999999999987
No 61
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.70 E-value=9.1e-16 Score=166.40 Aligned_cols=293 Identities=12% Similarity=0.104 Sum_probs=179.6
Q ss_pred cccCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCcc------
Q 003037 93 LIDVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPF------ 166 (854)
Q Consensus 93 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~------ 166 (854)
+..+..||||++++++|.+++.. + +++.|+|++|+|||||++++++.. . .+|+++....
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~-------~-~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~ 72 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLEN-------Y-PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHI 72 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHH-------C-SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCB
T ss_pred CCChHhcCChHHHHHHHHHHHhc-------C-CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCC
Confidence 34567899999999999998852 1 589999999999999999998842 1 6777765432
Q ss_pred CHHHHHHHHHHHhcC-----------------C-CCCCccHHHHHHHHHHHhcC-CeEEEEEecCCCcC-------hhhH
Q 003037 167 DEFRIAKAIIEALEG-----------------S-TPSLGELNSLLERIYASIAR-KKFLLVLDDVWTED-------YNKW 220 (854)
Q Consensus 167 ~~~~~~~~i~~~l~~-----------------~-~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~-------~~~~ 220 (854)
+...++..+.+.+.. . .....+.+.+...+.+.... ++++|||||++.-+ ...+
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~ 152 (350)
T 2qen_A 73 TREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELL 152 (350)
T ss_dssp CHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHH
Confidence 556666666665532 0 00123556666666665543 39999999996532 1223
Q ss_pred HHHHHhhcCCCCCcEEEEecccHHHHhh----------cc-C-cceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHH
Q 003037 221 ETFQRCLKNGLRGSKILVTTRKMTVAQM----------MQ-S-NDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEI 288 (854)
Q Consensus 221 ~~l~~~l~~~~~gs~ilvTtR~~~v~~~----------~~-~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~ 288 (854)
..+...+... .+.++|+|++....... .. . ...+.+.+|+.+|+.+++.......+. ... .+.
T Consensus 153 ~~L~~~~~~~-~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~-~~~---~~~ 227 (350)
T 2qen_A 153 ALFAYAYDSL-PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL-DVP---ENE 227 (350)
T ss_dssp HHHHHHHHHC-TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC-CCC---HHH
T ss_pred HHHHHHHHhc-CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC-CCC---HHH
Confidence 3343333322 47789999887643211 11 1 247899999999999999875421111 111 346
Q ss_pred HHHHHhhcCCCcHHHHHHHhhhccCCCHHHHHH-HHhhhcCCccccccCccchhhcccCCC---hHHHHHHHhhhhcCCC
Q 003037 289 GRKIVGKCKGLPLAAKTIGSLLRFKRSSREWQS-ILDSEIGQLEEFERGLLPPLLLSYNDM---PSVIKWSFSYCAIFPK 364 (854)
Q Consensus 289 ~~~I~~~~~GlPLai~~~~~~l~~~~~~~~w~~-~~~~~~~~~~~~~~~v~~~l~~sy~~L---~~~~k~cf~~~s~fp~ 364 (854)
+..|++.|+|+|+++..++..+....+...+.. ..+. +...+.-.+..+ ++..+..+..+|.
T Consensus 228 ~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~l~~~~~~~~~~l~~la~--- 293 (350)
T 2qen_A 228 IEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEV-----------AKGLIMGELEELRRRSPRYVDILRAIAL--- 293 (350)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHH-----------HHHHHHHHHHHHHHHCHHHHHHHHHHHT---
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHH-----------HHHHHHHHHHHHHhCChhHHHHHHHHHh---
Confidence 778999999999999998876432222222211 1111 001111111222 6788888888887
Q ss_pred CceechHHHHHHHHHhCcccCCCCchHHHHHHHHHHHHHhccccccccccCCCCeEeEEEe-chhHHHHHH
Q 003037 365 DYNIEKDELIKLWLAQGYIRPKENKELEMIVEEYFDYLAARSFFQEFEREHTEGLVVRCKM-HDIVHDFAQ 434 (854)
Q Consensus 365 ~~~i~~~~li~~Wia~g~i~~~~~~~~e~~~~~~l~~L~~~sli~~~~~~~~~~~~~~~~m-Hdlv~~~a~ 434 (854)
+ .++...+.....+.. ++.+ ......+++.|++.++|.... + .|++ |++++++.+
T Consensus 294 g-~~~~~~l~~~~~~~~-----~~~~-~~~~~~~l~~L~~~gli~~~~----~----~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 294 G-YNRWSLIRDYLAVKG-----TKIP-EPRLYALLENLKKMNWIVEED----N----TYKIADPVVATVLR 349 (350)
T ss_dssp T-CCSHHHHHHHHHHTT-----CCCC-HHHHHHHHHHHHHTTSEEEET----T----EEEESSHHHHHHHT
T ss_pred C-CCCHHHHHHHHHHHh-----CCCC-HHHHHHHHHHHHhCCCEEecC----C----EEEEecHHHHHHHc
Confidence 2 234455544432211 0111 234668999999999997652 1 3554 678777653
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.70 E-value=1.6e-18 Score=185.15 Aligned_cols=271 Identities=15% Similarity=0.117 Sum_probs=169.0
Q ss_pred cCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccccCCCceeeecCCCCcccchhh
Q 003037 479 SAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIEELPETC 558 (854)
Q Consensus 479 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~~lP~~i 558 (854)
.+++|++|++.+|. +....|..|.++++|++|+|++|. +..++. +..+++|++|++++|.++.+|.
T Consensus 32 ~~~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~Ls~n~--------l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~-- 97 (317)
T 3o53_A 32 SAWNVKELDLSGNP---LSQISAADLAPFTKLELLNLSSNV--------LYETLD-LESLSTLRTLDLNNNYVQELLV-- 97 (317)
T ss_dssp TGGGCSEEECTTSC---CCCCCHHHHTTCTTCCEEECTTSC--------CEEEEE-ETTCTTCCEEECCSSEEEEEEE--
T ss_pred cCCCCCEEECcCCc---cCcCCHHHhhCCCcCCEEECCCCc--------CCcchh-hhhcCCCCEEECcCCccccccC--
Confidence 45578888888877 555566677888888888888887 666554 7788888888888888777663
Q ss_pred hcCCCCcEEeecCcccccccccccccCCCCcccCceeecCCCCCCcccccccccCCceeEEecccCCCChhHHHHhhccC
Q 003037 559 CELFNVQTLEVLDCRSFRRLPQGFGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLGNVRDADEAKSAELEK 638 (854)
Q Consensus 559 ~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~ 638 (854)
+++|++|++++|. +..+|.. .+++|++|.. ..+ .........+..
T Consensus 98 --~~~L~~L~l~~n~-l~~~~~~--~~~~L~~L~l---~~N---------------------------~l~~~~~~~~~~ 142 (317)
T 3o53_A 98 --GPSIETLHAANNN-ISRVSCS--RGQGKKNIYL---ANN---------------------------KITMLRDLDEGC 142 (317)
T ss_dssp --CTTCCEEECCSSC-CSEEEEC--CCSSCEEEEC---CSS---------------------------CCCSGGGBCTGG
T ss_pred --CCCcCEEECCCCc-cCCcCcc--ccCCCCEEEC---CCC---------------------------CCCCccchhhhc
Confidence 3778888888877 6666543 3455555521 111 111111223455
Q ss_pred CCCCCcEEEEecCCCCCCCcchHHHhhhC-CCCCCCCeEEEeccCCCCCCCCchhhcccCccEEEEecccCCCCCCCCCC
Q 003037 639 KKNLLDLVLSFDGGQRIGDVNDKAIIEAL-QPPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCDTMPPLGK 717 (854)
Q Consensus 639 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~ 717 (854)
+++|+.|++++|.. ....+..+ ..+++|+.|++ +++.... +|.. ..+++|+.|+|++|.+....+.+..
T Consensus 143 l~~L~~L~Ls~N~l-------~~~~~~~~~~~l~~L~~L~L-~~N~l~~-~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~ 212 (317)
T 3o53_A 143 RSRVQYLDLKLNEI-------DTVNFAELAASSDTLEHLNL-QYNFIYD-VKGQ-VVFAKLKTLDLSSNKLAFMGPEFQS 212 (317)
T ss_dssp GSSEEEEECTTSCC-------CEEEGGGGGGGTTTCCEEEC-TTSCCCE-EECC-CCCTTCCEEECCSSCCCEECGGGGG
T ss_pred cCCCCEEECCCCCC-------CcccHHHHhhccCcCCEEEC-CCCcCcc-cccc-cccccCCEEECCCCcCCcchhhhcc
Confidence 67777777776611 11112222 24578888888 5555444 4432 3478888888888877665555778
Q ss_pred CCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCCCccceeeccccccccccccCCCccccCCCccceeeec
Q 003037 718 LPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLKQVLFYNICHWEEWDFGKGDSITIMPQLKKLEFE 797 (854)
Q Consensus 718 L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~ 797 (854)
+++|+.|+|++|. +..+|..+ ..+++|+.|++.+++-.... .+..+..+++|+.|++.
T Consensus 213 l~~L~~L~L~~N~-l~~l~~~~------------------~~l~~L~~L~l~~N~~~~~~---~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 213 AAGVTWISLRNNK-LVLIEKAL------------------RFSQNLEHFDLRGNGFHCGT---LRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp GTTCSEEECTTSC-CCEECTTC------------------CCCTTCCEEECTTCCCBHHH---HHHHHHTCHHHHHHHHH
T ss_pred cCcccEEECcCCc-ccchhhHh------------------hcCCCCCEEEccCCCccCcC---HHHHHhccccceEEECC
Confidence 8888888888886 66676542 25788888888874332111 11134468888999888
Q ss_pred ccccCcCCCcCCCCCCCcCEEEEecCcchHHhh
Q 003037 798 RCTELKSVPEKLLRSTTLEELSIVECPILVERY 830 (854)
Q Consensus 798 ~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~~~ 830 (854)
+|+.+...+..-...+.+....-..|..+...+
T Consensus 271 ~~~~l~~~~~~~~~~~~~~~~~~~cc~~l~~~~ 303 (317)
T 3o53_A 271 TVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPF 303 (317)
T ss_dssp HHHHHHSSSSCCCSSTTCEEETTEEEBCCTTTH
T ss_pred CchhccCCchhccCCCceecccceeeccCChhH
Confidence 777666554333333444444444566665443
No 63
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.69 E-value=4.5e-16 Score=172.89 Aligned_cols=304 Identities=13% Similarity=0.045 Sum_probs=182.6
Q ss_pred CCccccchhHHHHHHHHh-cccccccCCCeEEEEE--EecCCCcHHHHHHHHHhccccc---cccC-eeEEEEeCCccCH
Q 003037 96 VSEVRGRDEEKNTLKSKL-LCESSEQQNAVQVISL--VGMGGIGKTTLAQFAYNNNDVI---NHFE-KRIWVCVSDPFDE 168 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vv~I--~G~gGiGKTtLa~~v~~~~~~~---~~f~-~~~wv~~s~~~~~ 168 (854)
+..++||++++++|...+ .....+.....+.+.| +|++|+||||||+.+++..... ..+. .++|+.+....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 478999999999999988 4321100013456667 9999999999999999852211 0122 4568877677788
Q ss_pred HHHHHHHHHHhcCCCCC-CccHHHHHHHHHHHhc--CCeEEEEEecCCCc------ChhhHHHHHHhhcCC---C--CCc
Q 003037 169 FRIAKAIIEALEGSTPS-LGELNSLLERIYASIA--RKKFLLVLDDVWTE------DYNKWETFQRCLKNG---L--RGS 234 (854)
Q Consensus 169 ~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~------~~~~~~~l~~~l~~~---~--~gs 234 (854)
..++..++.+++...+. ..+.+.+...+.+.+. +++++|||||+|.- +...+..+...+... . .+.
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 89999999998765332 2345566666666664 77999999999652 123344443333322 2 344
Q ss_pred EEEEecccHHHHhhcc--------C-cceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcC------CC
Q 003037 235 KILVTTRKMTVAQMMQ--------S-NDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCK------GL 299 (854)
Q Consensus 235 ~ilvTtR~~~v~~~~~--------~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~------Gl 299 (854)
.+|+||+...+...+. . ...+.+.+|+.++++++|...+...... .....+.+..|++.|+ |+
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~G~ 258 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRD--TVWEPRHLELISDVYGEDKGGDGS 258 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCT--TSCCHHHHHHHHHHHCGGGTSCCC
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCC--CCCChHHHHHHHHHHHHhccCCCc
Confidence 5888887655332111 1 2239999999999999997653210000 0111345677888888 99
Q ss_pred cHHHHHHHhhh---c--cC---CCHHHHHHHHhhhcCCccccccCccchhhcccCCChHHHHHHHhhhhcCC--CCceec
Q 003037 300 PLAAKTIGSLL---R--FK---RSSREWQSILDSEIGQLEEFERGLLPPLLLSYNDMPSVIKWSFSYCAIFP--KDYNIE 369 (854)
Q Consensus 300 PLai~~~~~~l---~--~~---~~~~~w~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~k~cf~~~s~fp--~~~~i~ 369 (854)
|..+..+.... . .. -+.+.+..++..... ...+.-.+..||++.+.++..++.+. .+..+.
T Consensus 259 p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~ 329 (412)
T 1w5s_A 259 ARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA---------ASIQTHELEALSIHELIILRLIAEATLGGMEWIN 329 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBC
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCcc
Confidence 97665554321 1 11 133444443332110 23345577889999999998888653 233455
Q ss_pred hHHHHHHHHHh--CcccCCCCchHHHHHHHHHHHHHhcccccccc
Q 003037 370 KDELIKLWLAQ--GYIRPKENKELEMIVEEYFDYLAARSFFQEFE 412 (854)
Q Consensus 370 ~~~li~~Wia~--g~i~~~~~~~~e~~~~~~l~~L~~~sli~~~~ 412 (854)
...+...|..- .... ... ........+++.|+..++|....
T Consensus 330 ~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 330 AGLLRQRYEDASLTMYN-VKP-RGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp HHHHHHHHHHHHHHHSC-CCC-CCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHHHhhcC-CCC-CCHHHHHHHHHHHHhCCCEEeec
Confidence 55555444211 0110 001 11234567899999999997754
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.69 E-value=9e-17 Score=179.98 Aligned_cols=223 Identities=19% Similarity=0.158 Sum_probs=117.9
Q ss_pred CCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccccc-ccccccCCCceeeecCCCCcccch-hh
Q 003037 481 KKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIP-KEIKKLIHLRFLKLVWLDIEELPE-TC 558 (854)
Q Consensus 481 ~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP-~~i~~L~~L~~L~L~~~~i~~lP~-~i 558 (854)
++++.|.+.+|. +..+.+..|.++++|++|+|++|. +..++ ..+.++.+|++|+|++|.++.+|. .+
T Consensus 64 ~~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~Ls~n~--------i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 132 (440)
T 3zyj_A 64 TNTRLLNLHENQ---IQIIKVNSFKHLRHLEILQLSRNH--------IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAF 132 (440)
T ss_dssp TTCSEEECCSCC---CCEECTTTTSSCSSCCEEECCSSC--------CCEECGGGGTTCSSCCEEECCSSCCSSCCTTTS
T ss_pred CCCcEEEccCCc---CCeeCHHHhhCCCCCCEEECCCCc--------CCccChhhccCCccCCEEECCCCcCCeeCHhHh
Confidence 344555555444 333333444555555555555554 33332 344455555555555555554443 34
Q ss_pred hcCCCCcEEeecCccccccccc-ccccCCCCcccCceeecCCCCCCcccccccccCCceeEEecccCCCChhHHHHhhcc
Q 003037 559 CELFNVQTLEVLDCRSFRRLPQ-GFGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLGNVRDADEAKSAELE 637 (854)
Q Consensus 559 ~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~ 637 (854)
..+++|++|++++|. +..+|. .+..+++|++|...............+..+.+|+ .|.+.+. .+... ..+.
T Consensus 133 ~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~-~L~L~~n-~l~~~-----~~~~ 204 (440)
T 3zyj_A 133 VYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR-YLNLAMC-NLREI-----PNLT 204 (440)
T ss_dssp CSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCC-EEECTTS-CCSSC-----CCCT
T ss_pred hccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccC-eecCCCC-cCccc-----cccC
Confidence 455555555555554 444433 2344444444422111110000001122222222 3333221 01111 1356
Q ss_pred CCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCchhhcccCccEEEEecccCCCCCCC-CC
Q 003037 638 KKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCDTMPP-LG 716 (854)
Q Consensus 638 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~ 716 (854)
.+++|+.|+++.|. .....+..+..+++|+.|++ .++......|..+..+++|+.|+|++|.+....+. +.
T Consensus 205 ~l~~L~~L~Ls~N~-------l~~~~~~~~~~l~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 276 (440)
T 3zyj_A 205 PLIKLDELDLSGNH-------LSAIRPGSFQGLMHLQKLWM-IQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276 (440)
T ss_dssp TCSSCCEEECTTSC-------CCEECTTTTTTCTTCCEEEC-TTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTS
T ss_pred CCcccCEEECCCCc-------cCccChhhhccCccCCEEEC-CCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhc
Confidence 67888889888772 11222456777889999999 66555442466678899999999999987665444 77
Q ss_pred CCCCCCEEEEcCCC
Q 003037 717 KLPSLEILEIRGNW 730 (854)
Q Consensus 717 ~L~~L~~L~L~~~~ 730 (854)
.+++|+.|+|++|+
T Consensus 277 ~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 277 PLHHLERIHLHHNP 290 (440)
T ss_dssp SCTTCCEEECCSSC
T ss_pred cccCCCEEEcCCCC
Confidence 89999999999887
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=8e-17 Score=182.08 Aligned_cols=233 Identities=12% Similarity=0.120 Sum_probs=128.7
Q ss_pred cccEEEecCCCCcccccccccccc-ccccccCCCceeeecCCCCcccchhhhcCCCCcEEeecCcccccccccccccCCC
Q 003037 509 CLRTLKITGISGEKRYFRIIVEIP-KEIKKLIHLRFLKLVWLDIEELPETCCELFNVQTLEVLDCRSFRRLPQGFGKLVN 587 (854)
Q Consensus 509 ~Lr~L~L~~~~~~~~~~~~i~~lP-~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~ 587 (854)
+|++|+|++|. +..+| ..++++++|++|+|++|.++.+|+ ++.+++|++|++++|. +..+|.. ++
T Consensus 35 ~L~~L~Ls~n~--------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~~----~~ 100 (487)
T 3oja_A 35 NVKELDLSGNP--------LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLVG----PS 100 (487)
T ss_dssp GCCEEECCSSC--------CCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEEC----TT
T ss_pred CccEEEeeCCc--------CCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCCC----CC
Confidence 56666666665 44443 456666666666666666655444 5666666666666665 4444421 34
Q ss_pred CcccCceeecCCCCCCcccccccccCCceeEEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhC
Q 003037 588 LRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEAL 667 (854)
Q Consensus 588 L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l 667 (854)
|++|.. ..+. +. .+ ....+++|+.|+++.|. .....+..+
T Consensus 101 L~~L~L---~~N~------------l~-~~-----------------~~~~l~~L~~L~L~~N~-------l~~~~~~~~ 140 (487)
T 3oja_A 101 IETLHA---ANNN------------IS-RV-----------------SCSRGQGKKNIYLANNK-------ITMLRDLDE 140 (487)
T ss_dssp CCEEEC---CSSC------------CC-CE-----------------EECCCSSCEEEECCSSC-------CCSGGGBCG
T ss_pred cCEEEC---cCCc------------CC-CC-----------------CccccCCCCEEECCCCC-------CCCCCchhh
Confidence 444411 0000 00 00 00112345555555541 111112234
Q ss_pred CCCCCCCeEEEeccCCCCCCCCchhh-cccCccEEEEecccCCCCCCCCCCCCCCCEEEEcCCCCceEeCccccCCCCCC
Q 003037 668 QPPPNIESLRIEYHYIGISGWPSWIV-SLNKLKKLVLYQFYLCDTMPPLGKLPSLEILEIRGNWNVKRVGDEFLGVGGGD 746 (854)
Q Consensus 668 ~~~~~L~~L~l~~~~~~~~~lp~~~~-~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~ 746 (854)
..+++|+.|++ +++......|.++. .+++|+.|+|++|.+... +....+++|+.|+|++|. +..++..+
T Consensus 141 ~~l~~L~~L~L-s~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~------- 210 (487)
T 3oja_A 141 GCRSRVQYLDL-KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNK-LAFMGPEF------- 210 (487)
T ss_dssp GGGSSEEEEEC-TTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSC-CCEECGGG-------
T ss_pred cCCCCCCEEEC-CCCCCCCcChHHHhhhCCcccEEecCCCccccc-cccccCCCCCEEECCCCC-CCCCCHhH-------
Confidence 44567777777 44443332455554 678888888888865443 445567888888888776 55565542
Q ss_pred CCccccCCccccCCCccceeeccccccccccccCCCccccCCCccceeeecccccC-cCCCcCCCCCCCcCEEEEe
Q 003037 747 HLHGISTSSSVIAFPKLKQVLFYNICHWEEWDFGKGDSITIMPQLKKLEFERCTEL-KSVPEKLLRSTTLEELSIV 821 (854)
Q Consensus 747 ~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l-~~lp~~l~~l~~L~~L~l~ 821 (854)
..+++|+.|++++ +.+..++. .+..+++|+.|++++|+.. ..+|..+..++.|+.+++.
T Consensus 211 -----------~~l~~L~~L~Ls~-N~l~~lp~----~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 211 -----------QSAAGVTWISLRN-NKLVLIEK----ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp -----------GGGTTCSEEECTT-SCCCEECT----TCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred -----------cCCCCccEEEecC-CcCcccch----hhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 2567777777777 34444433 3446777777777777544 3456666666666666664
No 66
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=173.31 Aligned_cols=251 Identities=16% Similarity=0.125 Sum_probs=180.3
Q ss_pred cCceEEEEeeeCCCC-CC-cccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccccccc-
Q 003037 458 VEKVRHSMLKLGYDS-FP-DSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKE- 534 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~-~~-~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~- 534 (854)
..+++++.+..+... .+ ..+..+++|++|.+.+|. +....+..|.++++|++|++++|. +..+|..
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~Ls~n~--------l~~~~~~~ 119 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG---INTIEEDSFSSLGSLEHLDLSYNY--------LSNLSSSW 119 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECCSSC--------CSSCCHHH
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc---cCccCHhhcCCCCCCCEEECCCCc--------CCcCCHhH
Confidence 458999999988766 33 368899999999999998 666567779999999999999999 8888876
Q ss_pred ccccCCCceeeecCCCCcccch--hhhcCCCCcEEeecCcccccccc-cccccCCCCcccCceeecCCCCCCcccccccc
Q 003037 535 IKKLIHLRFLKLVWLDIEELPE--TCCELFNVQTLEVLDCRSFRRLP-QGFGKLVNLRNLSKFIVSRSGGSKLEDLRQLK 611 (854)
Q Consensus 535 i~~L~~L~~L~L~~~~i~~lP~--~i~~L~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~ 611 (854)
++++++|++|++++|.++.+|. .+.++++|++|++++|..+..++ ..++.+++|++|........ ......+..+.
T Consensus 120 ~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~ 198 (353)
T 2z80_A 120 FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQ 198 (353)
T ss_dssp HTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC-EECTTTTTTCS
T ss_pred hCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC-ccCHHHHhccc
Confidence 8999999999999999999997 78999999999999996567764 56888888888844332211 11122344444
Q ss_pred cCCceeEEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCC----C
Q 003037 612 HLRGSLKIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGIS----G 687 (854)
Q Consensus 612 ~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----~ 687 (854)
+|+ .|.+.+.. ........+..+++|+.|+++.+....... ..+........++.+++ .+..... .
T Consensus 199 ~L~-~L~l~~n~----l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~----~~l~~~~~~~~l~~l~L-~~~~l~~~~l~~ 268 (353)
T 2z80_A 199 NVS-HLILHMKQ----HILLLEIFVDVTSSVECLELRDTDLDTFHF----SELSTGETNSLIKKFTF-RNVKITDESLFQ 268 (353)
T ss_dssp EEE-EEEEECSC----STTHHHHHHHHTTTEEEEEEESCBCTTCCC----C------CCCCCCEEEE-ESCBCCHHHHHH
T ss_pred cCC-eecCCCCc----cccchhhhhhhcccccEEECCCCccccccc----cccccccccchhhcccc-ccccccCcchhh
Confidence 444 66665522 222223334567899999999873211110 01112234567888888 4433221 2
Q ss_pred CCchhhcccCccEEEEecccCCCCCCC-CCCCCCCCEEEEcCCC
Q 003037 688 WPSWIVSLNKLKKLVLYQFYLCDTMPP-LGKLPSLEILEIRGNW 730 (854)
Q Consensus 688 lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~ 730 (854)
+|.++..+++|+.|+|++|.+....+. ++.+++|++|+|++|+
T Consensus 269 l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 577788999999999999987744334 5899999999999997
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.67 E-value=5.8e-16 Score=178.62 Aligned_cols=233 Identities=18% Similarity=0.181 Sum_probs=171.3
Q ss_pred CCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccccCCCceeeecCCCCcccchhhhc
Q 003037 481 KKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIEELPETCCE 560 (854)
Q Consensus 481 ~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~~lP~~i~~ 560 (854)
.++++|.+.++. +.. +|..+. ++|++|+|++|. +..+|. .+.+|++|+|++|.|+.+|. .
T Consensus 40 ~~l~~L~ls~n~---L~~-lp~~l~--~~L~~L~L~~N~--------l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~ 99 (622)
T 3g06_A 40 NGNAVLNVGESG---LTT-LPDCLP--AHITTLVIPDNN--------LTSLPA---LPPELRTLEVSGNQLTSLPV---L 99 (622)
T ss_dssp HCCCEEECCSSC---CSC-CCSCCC--TTCSEEEECSCC--------CSCCCC---CCTTCCEEEECSCCCSCCCC---C
T ss_pred CCCcEEEecCCC---cCc-cChhhC--CCCcEEEecCCC--------CCCCCC---cCCCCCEEEcCCCcCCcCCC---C
Confidence 358899998887 444 454443 789999999998 888887 57889999999999999987 6
Q ss_pred CCCCcEEeecCcccccccccccccCCCCcccCceeecCCCCCCcccccccccCCceeEEecccCCCChhHHHHhhccCCC
Q 003037 561 LFNVQTLEVLDCRSFRRLPQGFGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLGNVRDADEAKSAELEKKK 640 (854)
Q Consensus 561 L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~ 640 (854)
+++|++|++++|. +..+|. .+++|++|.. ..+ . ++ .+. ..++
T Consensus 100 l~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L---~~N---~------l~------------~lp----------~~l~ 141 (622)
T 3g06_A 100 PPGLLELSIFSNP-LTHLPA---LPSGLCKLWI---FGN---Q------LT------------SLP----------VLPP 141 (622)
T ss_dssp CTTCCEEEECSCC-CCCCCC---CCTTCCEEEC---CSS---C------CS------------CCC----------CCCT
T ss_pred CCCCCEEECcCCc-CCCCCC---CCCCcCEEEC---CCC---C------CC------------cCC----------CCCC
Confidence 7899999999988 788887 4556666621 111 0 11 111 0136
Q ss_pred CCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCchhhcccCccEEEEecccCCCCCCCCCCCCC
Q 003037 641 NLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCDTMPPLGKLPS 720 (854)
Q Consensus 641 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~ 720 (854)
+|+.|+++.|.. ..++ ..+++|+.|++ .++.... +| ..+++|+.|+|++|.+.. +|. .+++
T Consensus 142 ~L~~L~Ls~N~l--------~~l~---~~~~~L~~L~L-~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~--~~~~ 202 (622)
T 3g06_A 142 GLQELSVSDNQL--------ASLP---ALPSELCKLWA-YNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT--LPSE 202 (622)
T ss_dssp TCCEEECCSSCC--------SCCC---CCCTTCCEEEC-CSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC--CCTT
T ss_pred CCCEEECcCCcC--------CCcC---CccCCCCEEEC-CCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC--ccch
Confidence 888999988721 1111 13578999999 6666555 77 457899999999997764 443 3589
Q ss_pred CCEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCCCccceeeccccccccccccCCCccccCCCccceeeecccc
Q 003037 721 LEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLKQVLFYNICHWEEWDFGKGDSITIMPQLKKLEFERCT 800 (854)
Q Consensus 721 L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~ 800 (854)
|+.|++++|. +..++. .+++|+.|+++++ .+..++. .+++|+.|++++|
T Consensus 203 L~~L~L~~N~-l~~l~~---------------------~~~~L~~L~Ls~N-~L~~lp~-------~l~~L~~L~Ls~N- 251 (622)
T 3g06_A 203 LYKLWAYNNR-LTSLPA---------------------LPSGLKELIVSGN-RLTSLPV-------LPSELKELMVSGN- 251 (622)
T ss_dssp CCEEECCSSC-CSSCCC---------------------CCTTCCEEECCSS-CCSCCCC-------CCTTCCEEECCSS-
T ss_pred hhEEECcCCc-ccccCC---------------------CCCCCCEEEccCC-ccCcCCC-------CCCcCcEEECCCC-
Confidence 9999999987 554442 3689999999984 5565551 5799999999999
Q ss_pred cCcCCCcCCCCCCCcCEEEEecCc
Q 003037 801 ELKSVPEKLLRSTTLEELSIVECP 824 (854)
Q Consensus 801 ~l~~lp~~l~~l~~L~~L~l~~c~ 824 (854)
.+..+|. .+++|+.|++++|.
T Consensus 252 ~L~~lp~---~~~~L~~L~Ls~N~ 272 (622)
T 3g06_A 252 RLTSLPM---LPSGLLSLSVYRNQ 272 (622)
T ss_dssp CCSCCCC---CCTTCCEEECCSSC
T ss_pred CCCcCCc---ccccCcEEeCCCCC
Confidence 7888997 57899999999984
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.65 E-value=1.1e-15 Score=160.49 Aligned_cols=130 Identities=18% Similarity=0.169 Sum_probs=72.0
Q ss_pred CCCCeEEEeccCCCCCCCCchhhcccCccEEEEecccCCCCCCC-CCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCc
Q 003037 671 PNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCDTMPP-LGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLH 749 (854)
Q Consensus 671 ~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~ 749 (854)
++|+.|++ .++......|..+..+++|+.|++++|.+....+. ++.+++|+.|+|++|. +..++...+
T Consensus 105 ~~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~--------- 173 (285)
T 1ozn_A 105 GRLHTLHL-DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAF--------- 173 (285)
T ss_dssp TTCCEEEC-TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTT---------
T ss_pred cCCCEEEC-CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHh---------
Confidence 34444444 33322221244455666666666666655443333 5666666666666664 444444321
Q ss_pred cccCCccccCCCccceeeccccccccccccCCCccccCCCccceeeecccccCcCCC-cCCCCCCCcCEEEEecCc
Q 003037 750 GISTSSSVIAFPKLKQVLFYNICHWEEWDFGKGDSITIMPQLKKLEFERCTELKSVP-EKLLRSTTLEELSIVECP 824 (854)
Q Consensus 750 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~ 824 (854)
..+++|+.|++.++ .+..+ .+..+..+++|+.|++++| .+..+| ..+..+++|++|+++++|
T Consensus 174 --------~~l~~L~~L~l~~n-~l~~~---~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 174 --------RGLHSLDRLLLHQN-RVAHV---HPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp --------TTCTTCCEEECCSS-CCCEE---CTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred --------cCccccCEEECCCC-ccccc---CHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCC
Confidence 24566666666663 22222 1223456777777777777 455555 346677777777777765
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.64 E-value=4.6e-17 Score=173.32 Aligned_cols=62 Identities=19% Similarity=0.058 Sum_probs=34.3
Q ss_pred CCCCCCCeEEEeccCCCCC--CCCch-hhcccCccEEEEecccCCCCC--CCCCCCCCCCEEEEcCCC
Q 003037 668 QPPPNIESLRIEYHYIGIS--GWPSW-IVSLNKLKKLVLYQFYLCDTM--PPLGKLPSLEILEIRGNW 730 (854)
Q Consensus 668 ~~~~~L~~L~l~~~~~~~~--~lp~~-~~~l~~L~~L~L~~~~~~~~l--~~l~~L~~L~~L~L~~~~ 730 (854)
..+++|+.|++ +++.... .++.. +..+++|+.|+|++|.+.... +.+..+++|+.|+|++|.
T Consensus 198 ~~l~~L~~L~L-~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 198 LKFPTLQVLAL-RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp TSCTTCCEEEC-TTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred ccCCCCCEEEC-CCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence 45566777777 4443332 01212 235567777777777665543 234556667777776665
No 70
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.64 E-value=1.2e-14 Score=158.00 Aligned_cols=290 Identities=11% Similarity=0.078 Sum_probs=172.7
Q ss_pred ccCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCc-----cCH
Q 003037 94 IDVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDP-----FDE 168 (854)
Q Consensus 94 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-----~~~ 168 (854)
..+..||||+++++.|.+ +. . +++.|+|++|+|||||++++++.. .. ..+|+++... .+.
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~-------~--~~v~i~G~~G~GKT~L~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~ 74 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LR-------A--PITLVLGLRRTGKSSIIKIGINEL--NL---PYIYLDLRKFEERNYISY 74 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TC-------S--SEEEEEESTTSSHHHHHHHHHHHH--TC---CEEEEEGGGGTTCSCCCH
T ss_pred CCHHHhcChHHHHHHHHH-hc-------C--CcEEEECCCCCCHHHHHHHHHHhc--CC---CEEEEEchhhccccCCCH
Confidence 345789999999999999 74 1 589999999999999999999842 22 2578887642 344
Q ss_pred HHHHHHHHHHhcC-------------C-----CC-----------CCccHHHHHHHHHHHhcCCeEEEEEecCCCcC---
Q 003037 169 FRIAKAIIEALEG-------------S-----TP-----------SLGELNSLLERIYASIARKKFLLVLDDVWTED--- 216 (854)
Q Consensus 169 ~~~~~~i~~~l~~-------------~-----~~-----------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--- 216 (854)
...+..+.+.+.. . .+ .....+.+...+.+... ++++|||||++.-+
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~ 153 (357)
T 2fna_A 75 KDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLR 153 (357)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCT
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccC
Confidence 5555554443310 0 00 12244555555544322 49999999996521
Q ss_pred -hhhHHHHHHhhcCCCCCcEEEEecccHHHHhh----------cc-C-cceEecCCCCHHHHHHHHHHHhcCCCCCCCch
Q 003037 217 -YNKWETFQRCLKNGLRGSKILVTTRKMTVAQM----------MQ-S-NDVILIRELSEQACWSLFEQLAFFGRPRSECE 283 (854)
Q Consensus 217 -~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~----------~~-~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~ 283 (854)
...+..+...... ..+.++|+|+|....... +. . ...+.+.+|+.+|+.+++......... . ..
T Consensus 154 ~~~~~~~l~~~~~~-~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~-~~ 230 (357)
T 2fna_A 154 GVNLLPALAYAYDN-LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI-D-FK 230 (357)
T ss_dssp TCCCHHHHHHHHHH-CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC-C-CC
T ss_pred chhHHHHHHHHHHc-CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC-C-CC
Confidence 1223333333322 246789999997653221 11 1 257899999999999999875421111 1 11
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHHhhhccCCCHHHHHHH-HhhhcCCccccccCccchhh-ccc--CCChHHHHHHHhhh
Q 003037 284 QLIEIGRKIVGKCKGLPLAAKTIGSLLRFKRSSREWQSI-LDSEIGQLEEFERGLLPPLL-LSY--NDMPSVIKWSFSYC 359 (854)
Q Consensus 284 ~~~~~~~~I~~~~~GlPLai~~~~~~l~~~~~~~~w~~~-~~~~~~~~~~~~~~v~~~l~-~sy--~~L~~~~k~cf~~~ 359 (854)
.. ..|++.|+|+|+++..++..+....+...|..- .+.... .+...+. +.+ ..|++..+..+..+
T Consensus 231 ~~----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~l~~~~~~~l~~l 299 (357)
T 2fna_A 231 DY----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKK-------LILKEFENFLHGREIARKRYLNIMRTL 299 (357)
T ss_dssp CH----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-------HHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred cH----HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHH-------HHHHHHHHHhhccccccHHHHHHHHHH
Confidence 11 679999999999999998776433333333221 111000 0111111 111 16889999999999
Q ss_pred hcCCCCceechHHHHHHHH-HhCcccCCCCchHHHHHHHHHHHHHhccccccccccCCCCeEeEEE-echhHHHH
Q 003037 360 AIFPKDYNIEKDELIKLWL-AQGYIRPKENKELEMIVEEYFDYLAARSFFQEFEREHTEGLVVRCK-MHDIVHDF 432 (854)
Q Consensus 360 s~fp~~~~i~~~~li~~Wi-a~g~i~~~~~~~~e~~~~~~l~~L~~~sli~~~~~~~~~~~~~~~~-mHdlv~~~ 432 (854)
|+ +. +...+....- ..|. .........+++.|++.++|.... + .|+ .|++++++
T Consensus 300 a~---g~--~~~~l~~~~~~~~g~------~~~~~~~~~~L~~L~~~gli~~~~----~----~y~f~~~~~~~~ 355 (357)
T 2fna_A 300 SK---CG--KWSDVKRALELEEGI------EISDSEIYNYLTQLTKHSWIIKEG----E----KYCPSEPLISLA 355 (357)
T ss_dssp TT---CB--CHHHHHHHHHHHHCS------CCCHHHHHHHHHHHHHTTSEEESS----S----CEEESSHHHHHH
T ss_pred Hc---CC--CHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHhCCCEEecC----C----EEEecCHHHHHh
Confidence 98 22 4444433211 1121 011234667899999999997653 1 355 57788875
No 71
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.64 E-value=6.9e-16 Score=162.02 Aligned_cols=200 Identities=21% Similarity=0.223 Sum_probs=150.9
Q ss_pred CCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccc-cccccccCCCceeeecCCC-Cccc-ch
Q 003037 480 AKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEI-PKEIKKLIHLRFLKLVWLD-IEEL-PE 556 (854)
Q Consensus 480 ~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~l-P~~i~~L~~L~~L~L~~~~-i~~l-P~ 556 (854)
.++|++|.+.++. +..+.+..|.++++|++|+|++|. +..+ |..+.++++|++|++++|. +..+ |.
T Consensus 31 ~~~l~~L~l~~n~---i~~~~~~~~~~~~~L~~L~l~~n~--------l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~ 99 (285)
T 1ozn_A 31 PAASQRIFLHGNR---ISHVPAASFRACRNLTILWLHSNV--------LARIDAAAFTGLALLEQLDLSDNAQLRSVDPA 99 (285)
T ss_dssp CTTCSEEECTTSC---CCEECTTTTTTCTTCCEEECCSSC--------CCEECTTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred CCCceEEEeeCCc---CCccCHHHcccCCCCCEEECCCCc--------cceeCHhhcCCccCCCEEeCCCCCCccccCHH
Confidence 4689999999888 555556678899999999999998 7776 7788999999999999997 8877 66
Q ss_pred hhhcCCCCcEEeecCccccccc-ccccccCCCCcccCceeecCCCCCCcccccccccCCceeEEecccCCCChhHHHHhh
Q 003037 557 TCCELFNVQTLEVLDCRSFRRL-PQGFGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLGNVRDADEAKSAE 635 (854)
Q Consensus 557 ~i~~L~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~ 635 (854)
.+.++++|++|++++|. +..+ |..+..+++|++|.. ..+ .+.. .....
T Consensus 100 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l---~~n---------------------~l~~------~~~~~ 148 (285)
T 1ozn_A 100 TFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYL---QDN---------------------ALQA------LPDDT 148 (285)
T ss_dssp TTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEEC---CSS---------------------CCCC------CCTTT
T ss_pred HhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEEC---CCC---------------------cccc------cCHhH
Confidence 78899999999999998 6666 455677788877722 111 0000 01123
Q ss_pred ccCCCCCCcEEEEecCCCCCCCcchHHHh-hhCCCCCCCCeEEEeccCCCCCCCCchhhcccCccEEEEecccCCCCCCC
Q 003037 636 LEKKKNLLDLVLSFDGGQRIGDVNDKAII-EALQPPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCDTMPP 714 (854)
Q Consensus 636 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~ 714 (854)
+..+++|+.|+++.+. ...++ ..+..+++|+.|++ .++......|.++..+++|+.|+|++|.+....+.
T Consensus 149 ~~~l~~L~~L~l~~n~--------l~~~~~~~~~~l~~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 219 (285)
T 1ozn_A 149 FRDLGNLTHLFLHGNR--------ISSVPERAFRGLHSLDRLLL-HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE 219 (285)
T ss_dssp TTTCTTCCEEECCSSC--------CCEECTTTTTTCTTCCEEEC-CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH
T ss_pred hccCCCccEEECCCCc--------ccccCHHHhcCccccCEEEC-CCCcccccCHhHccCcccccEeeCCCCcCCcCCHH
Confidence 5667888888888771 12222 24667889999999 66555543588888999999999999987765444
Q ss_pred -CCCCCCCCEEEEcCCC
Q 003037 715 -LGKLPSLEILEIRGNW 730 (854)
Q Consensus 715 -l~~L~~L~~L~L~~~~ 730 (854)
+..+++|+.|+|++|+
T Consensus 220 ~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 220 ALAPLRALQYLRLNDNP 236 (285)
T ss_dssp HHTTCTTCCEEECCSSC
T ss_pred HcccCcccCEEeccCCC
Confidence 8889999999999987
No 72
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.62 E-value=4.4e-18 Score=192.28 Aligned_cols=333 Identities=17% Similarity=0.162 Sum_probs=174.6
Q ss_pred CceEEEEeeeCCCC------CCcccccCCCceEEEEecCCCCcccCc-hhhhhcCCC----cccEEEecCCCCccccccc
Q 003037 459 EKVRHSMLKLGYDS------FPDSIFSAKKLRSFLIHSTNKDLISPV-LPVLFDQLT----CLRTLKITGISGEKRYFRI 527 (854)
Q Consensus 459 ~~~r~l~l~~~~~~------~~~~~~~~~~Lr~L~l~~~~~~~~~~~-l~~~~~~l~----~Lr~L~L~~~~~~~~~~~~ 527 (854)
++++++.+..+... ++..+..+++|++|++.++. +... +...+..++ +|++|+|++|.
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~---l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-------- 96 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE---LGDVGVHCVLQGLQTPSCKIQKLSLQNCC-------- 96 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC---CHHHHHHHHHHTTCSTTCCCCEEECTTSC--------
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc---CChHHHHHHHHHHhhCCCceeEEEccCCC--------
Confidence 45566666665543 12344555667777776665 2221 112223344 57777777766
Q ss_pred cc-----cccccccccCCCceeeecCCCCccc-chhhh-----cCCCCcEEeecCcccccc-----cccccccCCCCccc
Q 003037 528 IV-----EIPKEIKKLIHLRFLKLVWLDIEEL-PETCC-----ELFNVQTLEVLDCRSFRR-----LPQGFGKLVNLRNL 591 (854)
Q Consensus 528 i~-----~lP~~i~~L~~L~~L~L~~~~i~~l-P~~i~-----~L~~L~~L~l~~~~~l~~-----lp~~i~~L~~L~~L 591 (854)
+. .+|..+.++++|++|++++|.+... +..+. .+.+|++|++++|. +.. ++..+..+++|++|
T Consensus 97 i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L 175 (461)
T 1z7x_W 97 LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKEL 175 (461)
T ss_dssp CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEE
T ss_pred CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEE
Confidence 33 4566667777777777777766522 22222 24467777777765 332 34455566666666
Q ss_pred CceeecCCCCCCccccc-----ccccCCceeEEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhh
Q 003037 592 SKFIVSRSGGSKLEDLR-----QLKHLRGSLKIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEA 666 (854)
Q Consensus 592 ~~~~~~~~~~~~l~~L~-----~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 666 (854)
....... ....+..+. .+.+|+ .|.+.+..-...........+..+++|+.|+++++.. .......+.+.
T Consensus 176 ~L~~n~i-~~~~~~~l~~~l~~~~~~L~-~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l---~~~~~~~l~~~ 250 (461)
T 1z7x_W 176 TVSNNDI-NEAGVRVLCQGLKDSPCQLE-ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL---GDVGMAELCPG 250 (461)
T ss_dssp ECCSSBC-HHHHHHHHHHHHHHSCCCCC-EEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC---HHHHHHHHHHH
T ss_pred ECcCCCc-chHHHHHHHHHHhcCCCCce-EEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC---ChHHHHHHHHH
Confidence 3211110 000001110 122333 5555443211111123445566777888888877610 00001112222
Q ss_pred -CCCCCCCCeEEEeccCCCCCC----CCchhhcccCccEEEEecccCCCCCC----C--CCCCCCCCEEEEcCCCCceEe
Q 003037 667 -LQPPPNIESLRIEYHYIGISG----WPSWIVSLNKLKKLVLYQFYLCDTMP----P--LGKLPSLEILEIRGNWNVKRV 735 (854)
Q Consensus 667 -l~~~~~L~~L~l~~~~~~~~~----lp~~~~~l~~L~~L~L~~~~~~~~l~----~--l~~L~~L~~L~L~~~~~l~~i 735 (854)
...+++|+.|++ .++..... +|..+..+++|+.|+|++|.+....+ . ....++|+.|+|++|. +...
T Consensus 251 ~~~~~~~L~~L~L-~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~ 328 (461)
T 1z7x_W 251 LLHPSSRLRTLWI-WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAA 328 (461)
T ss_dssp HTSTTCCCCEEEC-TTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGG
T ss_pred HhcCCCCceEEEC-cCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC-CchH
Confidence 234678888888 55433221 34455567888888888876532111 1 1223688888888776 3221
Q ss_pred CccccCCCCCCCCccccCCccccCCCccceeeccccccccccccC-CCcccc-CCCccceeeecccccCc-----CCCcC
Q 003037 736 GDEFLGVGGGDHLHGISTSSSVIAFPKLKQVLFYNICHWEEWDFG-KGDSIT-IMPQLKKLEFERCTELK-----SVPEK 808 (854)
Q Consensus 736 ~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~-~l~~L~~L~l~~c~~l~-----~lp~~ 808 (854)
+...+. .....+++|+.|+++++ .+...... -...+. ..++|++|++++|. +. .+|..
T Consensus 329 ~~~~l~-------------~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~ 393 (461)
T 1z7x_W 329 CCSHFS-------------SVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAAT 393 (461)
T ss_dssp GHHHHH-------------HHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHH
T ss_pred HHHHHH-------------HHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHH
Confidence 110000 00224688999999885 33322110 000011 26789999999994 55 67877
Q ss_pred CCCCCCcCEEEEecCcc
Q 003037 809 LLRSTTLEELSIVECPI 825 (854)
Q Consensus 809 l~~l~~L~~L~l~~c~~ 825 (854)
+..+++|++|++++|+-
T Consensus 394 l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 394 LLANHSLRELDLSNNCL 410 (461)
T ss_dssp HHHCCCCCEEECCSSSC
T ss_pred HHhCCCccEEECCCCCC
Confidence 77889999999999863
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.62 E-value=8.7e-15 Score=153.53 Aligned_cols=65 Identities=9% Similarity=0.127 Sum_probs=41.0
Q ss_pred hcCCCcccEEEecCCCCccccccccccccccccccCCCceeeecCCCCcccc-hhhhcCCCCcEEeecCcccccccc
Q 003037 504 FDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIEELP-ETCCELFNVQTLEVLDCRSFRRLP 579 (854)
Q Consensus 504 ~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~~lP-~~i~~L~~L~~L~l~~~~~l~~lp 579 (854)
+.++++|+.++++++. +..+|..+. .+|++|+|++|.++.++ ..+.++++|++|++++|. +..+|
T Consensus 6 ~~~l~~l~~l~~~~~~--------l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~ 71 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN--------LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQ 71 (290)
T ss_dssp EECSTTCCEEECTTSC--------CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEE
T ss_pred ccccCCccEEECCCCC--------CCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCccc
Confidence 4556666777776666 666666554 46677777777766553 456666777777776665 44443
No 74
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.61 E-value=1e-15 Score=162.25 Aligned_cols=198 Identities=16% Similarity=0.185 Sum_probs=141.2
Q ss_pred cccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccccCCCceeeecCCCCcccch
Q 003037 477 IFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIEELPE 556 (854)
Q Consensus 477 ~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~~lP~ 556 (854)
...+++|++|.+.++. +.. ++ .+..+++|++|+|++|. +..+|. +.++++|++|++++|.++.+|
T Consensus 37 ~~~l~~L~~L~l~~~~---i~~-l~-~~~~l~~L~~L~L~~n~--------i~~~~~-~~~l~~L~~L~L~~n~l~~~~- 101 (308)
T 1h6u_A 37 QADLDGITTLSAFGTG---VTT-IE-GVQYLNNLIGLELKDNQ--------ITDLAP-LKNLTKITELELSGNPLKNVS- 101 (308)
T ss_dssp HHHHHTCCEEECTTSC---CCC-CT-TGGGCTTCCEEECCSSC--------CCCCGG-GTTCCSCCEEECCSCCCSCCG-
T ss_pred HHHcCCcCEEEeeCCC---ccC-ch-hhhccCCCCEEEccCCc--------CCCChh-HccCCCCCEEEccCCcCCCch-
Confidence 4467788888888877 444 34 37788888888888888 777777 888888888888888888876
Q ss_pred hhhcCCCCcEEeecCcccccccccccccCCCCcccCceeecCCCCCCcccccccccCCceeEEecccCCCChhHHHHhhc
Q 003037 557 TCCELFNVQTLEVLDCRSFRRLPQGFGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLGNVRDADEAKSAEL 636 (854)
Q Consensus 557 ~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l 636 (854)
.+.++++|++|++++|. +..+|. +..+++|++|.. ..+. + ... ..+
T Consensus 102 ~~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l---~~n~---------------------l---~~~-----~~l 147 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYL---DLNQ---------------------I---TNI-----SPL 147 (308)
T ss_dssp GGTTCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEEC---CSSC---------------------C---CCC-----GGG
T ss_pred hhcCCCCCCEEECCCCC-CCCchh-hcCCCCCCEEEC---CCCc---------------------c---CcC-----ccc
Confidence 58888888888888887 777765 777777777622 1110 0 000 014
Q ss_pred cCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCchhhcccCccEEEEecccCCCCCCCCC
Q 003037 637 EKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCDTMPPLG 716 (854)
Q Consensus 637 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~ 716 (854)
..+++|+.|+++.|. ...+. .+..+++|+.|++ .++.... +|. +..+++|+.|+|++|.+.... .+.
T Consensus 148 ~~l~~L~~L~l~~n~--------l~~~~-~l~~l~~L~~L~l-~~n~l~~-~~~-l~~l~~L~~L~L~~N~l~~~~-~l~ 214 (308)
T 1h6u_A 148 AGLTNLQYLSIGNAQ--------VSDLT-PLANLSKLTTLKA-DDNKISD-ISP-LASLPNLIEVHLKNNQISDVS-PLA 214 (308)
T ss_dssp GGCTTCCEEECCSSC--------CCCCG-GGTTCTTCCEEEC-CSSCCCC-CGG-GGGCTTCCEEECTTSCCCBCG-GGT
T ss_pred cCCCCccEEEccCCc--------CCCCh-hhcCCCCCCEEEC-CCCccCc-Chh-hcCCCCCCEEEccCCccCccc-ccc
Confidence 566778888887762 11112 2667789999999 6665544 554 778999999999999775543 588
Q ss_pred CCCCCCEEEEcCCCCceEeCc
Q 003037 717 KLPSLEILEIRGNWNVKRVGD 737 (854)
Q Consensus 717 ~L~~L~~L~L~~~~~l~~i~~ 737 (854)
.+++|+.|++++|. +...|.
T Consensus 215 ~l~~L~~L~l~~N~-i~~~~~ 234 (308)
T 1h6u_A 215 NTSNLFIVTLTNQT-ITNQPV 234 (308)
T ss_dssp TCTTCCEEEEEEEE-EECCCE
T ss_pred CCCCCCEEEccCCe-eecCCe
Confidence 89999999999887 444443
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.61 E-value=5.1e-15 Score=150.93 Aligned_cols=113 Identities=16% Similarity=0.117 Sum_probs=76.7
Q ss_pred CCchhhcccCcc---EEEEecc-cCCCCCCC-CCCCCCCC-EEEEcCCCCceEeCccccCCCCCCCCccccCCccccCCC
Q 003037 688 WPSWIVSLNKLK---KLVLYQF-YLCDTMPP-LGKLPSLE-ILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFP 761 (854)
Q Consensus 688 lp~~~~~l~~L~---~L~L~~~-~~~~~l~~-l~~L~~L~-~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~ 761 (854)
+|. +..+++|+ .|++++| .+....+. ++.+++|+ .|++++|. +..++...+ ..+
T Consensus 120 lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~------------------~~~ 179 (239)
T 2xwt_C 120 FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAF------------------NGT 179 (239)
T ss_dssp CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTT------------------TTC
T ss_pred ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhc------------------CCC
Confidence 454 45555555 8888887 44433332 77788888 88888876 567765433 226
Q ss_pred ccceeeccccccccccccCCCccccCC-CccceeeecccccCcCCCcCCCCCCCcCEEEEecCcch
Q 003037 762 KLKQVLFYNICHWEEWDFGKGDSITIM-PQLKKLEFERCTELKSVPEKLLRSTTLEELSIVECPIL 826 (854)
Q Consensus 762 ~L~~L~l~~~~~l~~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l 826 (854)
+|+.|++.++..+..++.. .+..+ ++|+.|++++| .+..+|.. .+++|+.|++.++..|
T Consensus 180 ~L~~L~L~~n~~l~~i~~~---~~~~l~~~L~~L~l~~N-~l~~l~~~--~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTVIDKD---AFGGVYSGPSLLDVSQT-SVTALPSK--GLEHLKELIARNTWTL 239 (239)
T ss_dssp EEEEEECTTCTTCCEECTT---TTTTCSBCCSEEECTTC-CCCCCCCT--TCTTCSEEECTTC---
T ss_pred CCCEEEcCCCCCcccCCHH---HhhccccCCcEEECCCC-ccccCChh--HhccCceeeccCccCC
Confidence 7888888886556555432 34567 89999999987 67788866 5789999999988653
No 76
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.60 E-value=4.3e-16 Score=181.96 Aligned_cols=341 Identities=15% Similarity=0.090 Sum_probs=157.9
Q ss_pred ceEEEEeeeCCCC----CCcccccCCCceEEEEecCCCCcccCc----hhhhhcCCCcccEEEecCCCCccccccccccc
Q 003037 460 KVRHSMLKLGYDS----FPDSIFSAKKLRSFLIHSTNKDLISPV----LPVLFDQLTCLRTLKITGISGEKRYFRIIVEI 531 (854)
Q Consensus 460 ~~r~l~l~~~~~~----~~~~~~~~~~Lr~L~l~~~~~~~~~~~----l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~l 531 (854)
+++++.+..+... .......+++|++|.+.+|. +.+. ++..+..+++|+.|++++|...... ...+
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~---~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~---~~~l 212 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS---FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKIS---PKDL 212 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCE---EECCCSHHHHHHHHHCCCCCEEECTTCCCSSCC---HHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcccc---ccCcchhHHHHHHhcCCCccEEEeeccCCCccC---HHHH
Confidence 3666666544311 11122356677777777665 2221 3444556677777777766610000 0234
Q ss_pred cccccccCCCceeeecCCCCcccchhhhcCCCCcEEeecCcccc---cccccccccCCCCcccCceeecCCCCCCcc-cc
Q 003037 532 PKEIKKLIHLRFLKLVWLDIEELPETCCELFNVQTLEVLDCRSF---RRLPQGFGKLVNLRNLSKFIVSRSGGSKLE-DL 607 (854)
Q Consensus 532 P~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l---~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~-~L 607 (854)
+..+.++++|++|++++|.+..+|..+.++++|+.|+++.+... ...+..+..+++|+.|. ........+. .+
T Consensus 213 ~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~---l~~~~~~~l~~~~ 289 (592)
T 3ogk_B 213 ETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLG---LSYMGPNEMPILF 289 (592)
T ss_dssp HHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEE---ETTCCTTTGGGGG
T ss_pred HHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccC---ccccchhHHHHHH
Confidence 55556667777777777777777766777777777777643311 12233344444554442 2211111111 12
Q ss_pred cccccCCceeEEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEecc------
Q 003037 608 RQLKHLRGSLKIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYH------ 681 (854)
Q Consensus 608 ~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~------ 681 (854)
..+.+|+ .|.+.+.. +. .......+..+++|+.|+++.+ .....+......+++|++|+++.+
T Consensus 290 ~~~~~L~-~L~Ls~~~-l~--~~~~~~~~~~~~~L~~L~L~~~-------~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~ 358 (592)
T 3ogk_B 290 PFAAQIR-KLDLLYAL-LE--TEDHCTLIQKCPNLEVLETRNV-------IGDRGLEVLAQYCKQLKRLRIERGADEQGM 358 (592)
T ss_dssp GGGGGCC-EEEETTCC-CC--HHHHHHHHTTCTTCCEEEEEGG-------GHHHHHHHHHHHCTTCCEEEEECCCCSSTT
T ss_pred hhcCCCc-EEecCCCc-CC--HHHHHHHHHhCcCCCEEeccCc-------cCHHHHHHHHHhCCCCCEEEeecCcccccc
Confidence 2333333 55554422 11 1122233455666666666633 111112222233455666666211
Q ss_pred ---CCCCC--CCCchhhcccCccEEEEecccCCCC-CCCCCC-CCCCCEEEEcC---CCCceEeCcc------ccCCCCC
Q 003037 682 ---YIGIS--GWPSWIVSLNKLKKLVLYQFYLCDT-MPPLGK-LPSLEILEIRG---NWNVKRVGDE------FLGVGGG 745 (854)
Q Consensus 682 ---~~~~~--~lp~~~~~l~~L~~L~L~~~~~~~~-l~~l~~-L~~L~~L~L~~---~~~l~~i~~~------~~~~~~~ 745 (854)
+.... .++.....+++|++|+++.+.+... +..++. +++|+.|++++ |..+...|.+ +.....+
T Consensus 359 ~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L 438 (592)
T 3ogk_B 359 EDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKL 438 (592)
T ss_dssp SSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTC
T ss_pred ccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCC
Confidence 11111 0111122456666666644433221 111222 55666666642 2222221100 0001111
Q ss_pred CCCccccCCc---------cccCCCccceeeccccccccccccCCCccccCCCccceeeecccccCcC--CCcCCCCCCC
Q 003037 746 DHLHGISTSS---------SVIAFPKLKQVLFYNICHWEEWDFGKGDSITIMPQLKKLEFERCTELKS--VPEKLLRSTT 814 (854)
Q Consensus 746 ~~l~~~~~~~---------~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~--lp~~l~~l~~ 814 (854)
+.+....+.. -...+++|+.|.+.++. +..... ...+..+++|++|+|++|+ +.. ++..+..+++
T Consensus 439 ~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~--~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~ 514 (592)
T 3ogk_B 439 RRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGL--MEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPS 514 (592)
T ss_dssp CEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHH--HHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSS
T ss_pred CEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHH--HHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCc
Confidence 1111100000 01236778888877643 221110 0012367889999999996 432 4444556789
Q ss_pred cCEEEEecCc
Q 003037 815 LEELSIVECP 824 (854)
Q Consensus 815 L~~L~l~~c~ 824 (854)
|++|+|++|+
T Consensus 515 L~~L~ls~n~ 524 (592)
T 3ogk_B 515 LRYLWVQGYR 524 (592)
T ss_dssp CCEEEEESCB
T ss_pred cCeeECcCCc
Confidence 9999999997
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.60 E-value=8.8e-16 Score=163.33 Aligned_cols=202 Identities=19% Similarity=0.176 Sum_probs=121.2
Q ss_pred cCCCceEEEEecCCCCcccCchhhhh--cCCCcccEEEecCCCCcccccccccccccccccc-----CCCceeeecCCCC
Q 003037 479 SAKKLRSFLIHSTNKDLISPVLPVLF--DQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKL-----IHLRFLKLVWLDI 551 (854)
Q Consensus 479 ~~~~Lr~L~l~~~~~~~~~~~l~~~~--~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L-----~~L~~L~L~~~~i 551 (854)
.+++|++|.+.+|. +.+..|..+ ..+++|++|+|++|. +..+|..++.+ ++|++|+|++|.+
T Consensus 93 ~l~~L~~L~L~~n~---l~~~~~~~~~~~~l~~L~~L~Ls~N~--------l~~~~~~~~~l~~~~~~~L~~L~L~~N~l 161 (312)
T 1wwl_A 93 GISGLQELTLENLE---VTGTAPPPLLEATGPDLNILNLRNVS--------WATRDAWLAELQQWLKPGLKVLSIAQAHS 161 (312)
T ss_dssp TTSCCCEEEEEEEB---CBSCCCCCSSSCCSCCCSEEEEESCB--------CSSSSSHHHHHHTTCCTTCCEEEEESCSC
T ss_pred CcCCccEEEccCCc---ccchhHHHHHHhcCCCccEEEccCCC--------CcchhHHHHHHHHhhcCCCcEEEeeCCCC
Confidence 35556666666555 333334333 555666666666655 45555555555 5566666666665
Q ss_pred cccc-hhhhcCCCCcEEeecCcccccc--ccccc--ccCCCCcccCceeecCCCCCCcccccccccCCceeEEecccCCC
Q 003037 552 EELP-ETCCELFNVQTLEVLDCRSFRR--LPQGF--GKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLGNVR 626 (854)
Q Consensus 552 ~~lP-~~i~~L~~L~~L~l~~~~~l~~--lp~~i--~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~ 626 (854)
..+| ..++++++|++|++++|..... +|..+ +.+++|++| .+.+. .+.
T Consensus 162 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L--------------------------~L~~N-~l~ 214 (312)
T 1wwl_A 162 LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVL--------------------------ALRNA-GME 214 (312)
T ss_dssp CCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEE--------------------------ECTTS-CCC
T ss_pred ccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEE--------------------------ECCCC-cCc
Confidence 5554 4555566666666665552221 23333 444444444 33221 112
Q ss_pred ChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHH-hhhCCCCCCCCeEEEeccCCCCCCCCchhhcccCccEEEEec
Q 003037 627 DADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAI-IEALQPPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQ 705 (854)
Q Consensus 627 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~ 705 (854)
.........+..+++|+.|++++|... ... ...+..+++|+.|++ +++.... +|.++. ++|+.|+|++
T Consensus 215 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~-------~~~~~~~~~~l~~L~~L~L-s~N~l~~-ip~~~~--~~L~~L~Ls~ 283 (312)
T 1wwl_A 215 TPSGVCSALAAARVQLQGLDLSHNSLR-------DAAGAPSCDWPSQLNSLNL-SFTGLKQ-VPKGLP--AKLSVLDLSY 283 (312)
T ss_dssp CHHHHHHHHHHTTCCCSEEECTTSCCC-------SSCCCSCCCCCTTCCEEEC-TTSCCSS-CCSSCC--SEEEEEECCS
T ss_pred chHHHHHHHHhcCCCCCEEECCCCcCC-------cccchhhhhhcCCCCEEEC-CCCccCh-hhhhcc--CCceEEECCC
Confidence 222233344567889999999887211 111 133445789999999 6665554 888776 8999999999
Q ss_pred ccCCCCCCCCCCCCCCCEEEEcCCC
Q 003037 706 FYLCDTMPPLGKLPSLEILEIRGNW 730 (854)
Q Consensus 706 ~~~~~~l~~l~~L~~L~~L~L~~~~ 730 (854)
|.+.+. |.+..+++|+.|+|++|.
T Consensus 284 N~l~~~-p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 284 NRLDRN-PSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp SCCCSC-CCTTTSCEEEEEECTTCT
T ss_pred CCCCCC-hhHhhCCCCCEEeccCCC
Confidence 987655 668999999999999987
No 78
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.58 E-value=4.3e-17 Score=184.14 Aligned_cols=331 Identities=14% Similarity=0.080 Sum_probs=190.9
Q ss_pred cCceEEEEeeeCCCCC---CcccccCCCceEEEEecCCCCccc-CchhhhhcCCCcccEEEecCCCCcccccccccc-cc
Q 003037 458 VEKVRHSMLKLGYDSF---PDSIFSAKKLRSFLIHSTNKDLIS-PVLPVLFDQLTCLRTLKITGISGEKRYFRIIVE-IP 532 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~~---~~~~~~~~~Lr~L~l~~~~~~~~~-~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~-lP 532 (854)
+.+++++.+..+.... ...+..+++|++|.+.+|...... ..++..+..+++|++|+|++|. +.. .+
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~--------l~~~~~ 73 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE--------LGDVGV 73 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC--------CHHHHH
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc--------CChHHH
Confidence 4678888888776541 222567889999999998832110 1256778889999999999998 544 22
Q ss_pred ccc-cccC----CCceeeecCCCCc-----ccchhhhcCCCCcEEeecCccccccc-ccccc-----cCCCCcccCceee
Q 003037 533 KEI-KKLI----HLRFLKLVWLDIE-----ELPETCCELFNVQTLEVLDCRSFRRL-PQGFG-----KLVNLRNLSKFIV 596 (854)
Q Consensus 533 ~~i-~~L~----~L~~L~L~~~~i~-----~lP~~i~~L~~L~~L~l~~~~~l~~l-p~~i~-----~L~~L~~L~~~~~ 596 (854)
..+ ..+. +|++|+|++|.++ .+|..+.++++|++|++++|. +... +..+. .+++|++|..
T Consensus 74 ~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L--- 149 (461)
T 1z7x_W 74 HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQL--- 149 (461)
T ss_dssp HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEEC---
T ss_pred HHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEEC---
Confidence 223 2344 6999999999987 568889999999999999988 5422 22221 2456777632
Q ss_pred cCCCCCC------cccccccccCCceeEEecccCCCChhHHHH----hhcc-CCCCCCcEEEEecCCCCCCCcchHHHhh
Q 003037 597 SRSGGSK------LEDLRQLKHLRGSLKIQGLGNVRDADEAKS----AELE-KKKNLLDLVLSFDGGQRIGDVNDKAIIE 665 (854)
Q Consensus 597 ~~~~~~~------l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~----~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 665 (854)
..+.... ...+..+.+|+ .|.+.+.. ...... ..+. ..++|+.|+++++.. .......+..
T Consensus 150 ~~n~l~~~~~~~l~~~l~~~~~L~-~L~L~~n~----i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l---~~~~~~~l~~ 221 (461)
T 1z7x_W 150 EYCSLSAASCEPLASVLRAKPDFK-ELTVSNND----INEAGVRVLCQGLKDSPCQLEALKLESCGV---TSDNCRDLCG 221 (461)
T ss_dssp TTSCCBGGGHHHHHHHHHHCTTCC-EEECCSSB----CHHHHHHHHHHHHHHSCCCCCEEECTTSCC---BTTHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhhCCCCC-EEECcCCC----cchHHHHHHHHHHhcCCCCceEEEccCCCC---cHHHHHHHHH
Confidence 2221111 11123334444 55555421 221111 1111 355788888876611 1111223455
Q ss_pred hCCCCCCCCeEEEeccCCCCCC----C-CchhhcccCccEEEEecccCCCC----CCC-CCCCCCCCEEEEcCCCCceEe
Q 003037 666 ALQPPPNIESLRIEYHYIGISG----W-PSWIVSLNKLKKLVLYQFYLCDT----MPP-LGKLPSLEILEIRGNWNVKRV 735 (854)
Q Consensus 666 ~l~~~~~L~~L~l~~~~~~~~~----l-p~~~~~l~~L~~L~L~~~~~~~~----l~~-l~~L~~L~~L~L~~~~~l~~i 735 (854)
.+..+++|+.|++ +++..... + +.....+++|+.|++++|.+... ++. +..+++|+.|+|++|. +...
T Consensus 222 ~l~~~~~L~~L~L-s~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~ 299 (461)
T 1z7x_W 222 IVASKASLRELAL-GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDE 299 (461)
T ss_dssp HHHHCTTCCEEEC-CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHH
T ss_pred HHHhCCCccEEec-cCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC-CchH
Confidence 5556678888888 44432210 0 11122467788888888765442 222 5557788888888775 3222
Q ss_pred CccccCCCCCCCCccccCCccccCCCccceeecccccccccccc-CCCccccCCCccceeeecccccCcCC-C----cCC
Q 003037 736 GDEFLGVGGGDHLHGISTSSSVIAFPKLKQVLFYNICHWEEWDF-GKGDSITIMPQLKKLEFERCTELKSV-P----EKL 809 (854)
Q Consensus 736 ~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~~l~~L~~L~l~~c~~l~~l-p----~~l 809 (854)
+...+... -....++|+.|++.+|. +..... .-+..+..+++|++|++++| .+... + ..+
T Consensus 300 ~~~~l~~~------------l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l 365 (461)
T 1z7x_W 300 GARLLCET------------LLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGL 365 (461)
T ss_dssp HHHHHHHH------------HTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHH
T ss_pred HHHHHHHH------------hccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHH
Confidence 11111000 00124689999998864 222110 00112345789999999998 45432 2 222
Q ss_pred CC-CCCcCEEEEecCc
Q 003037 810 LR-STTLEELSIVECP 824 (854)
Q Consensus 810 ~~-l~~L~~L~l~~c~ 824 (854)
.. .++|++|++++|.
T Consensus 366 ~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 366 GQPGSVLRVLWLADCD 381 (461)
T ss_dssp TSTTCCCCEEECTTSC
T ss_pred cCCCCceEEEECCCCC
Confidence 22 6799999999995
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.57 E-value=5.9e-14 Score=145.86 Aligned_cols=153 Identities=26% Similarity=0.258 Sum_probs=90.2
Q ss_pred cccEEEecCCCCccccccccccccccccccCCCceeeecCCCCcccch-hhhcCCCCcEEeecCccccccccccc-ccCC
Q 003037 509 CLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIEELPE-TCCELFNVQTLEVLDCRSFRRLPQGF-GKLV 586 (854)
Q Consensus 509 ~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~~lP~-~i~~L~~L~~L~l~~~~~l~~lp~~i-~~L~ 586 (854)
.++.++++++. +..+|..+. .+|++|+|++|.++.+|. .+.++++|++|++++|. +..+|.++ ..++
T Consensus 17 ~~~~l~~~~~~--------l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~ 85 (270)
T 2o6q_A 17 NKNSVDCSSKK--------LTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELK 85 (270)
T ss_dssp TTTEEECTTSC--------CSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCT
T ss_pred CCCEEEccCCC--------CCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCC
Confidence 45677777776 667776554 567777777777777664 56777777777777776 55665543 3344
Q ss_pred CCcccCceeecCCCCCCcccccccccCCceeEEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHH-hh
Q 003037 587 NLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAI-IE 665 (854)
Q Consensus 587 ~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~ 665 (854)
+|++| +++.+.. ..+ ..
T Consensus 86 ~L~~L------------------------------------------------------~l~~n~l--------~~~~~~ 103 (270)
T 2o6q_A 86 NLETL------------------------------------------------------WVTDNKL--------QALPIG 103 (270)
T ss_dssp TCCEE------------------------------------------------------ECCSSCC--------CCCCTT
T ss_pred CCCEE------------------------------------------------------ECCCCcC--------CcCCHh
Confidence 44443 2211100 000 01
Q ss_pred hCCCCCCCCeEEEeccCCCCCCCCchhhcccCccEEEEecccCCCCCCC-CCCCCCCCEEEEcCCCCceEeC
Q 003037 666 ALQPPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCDTMPP-LGKLPSLEILEIRGNWNVKRVG 736 (854)
Q Consensus 666 ~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~~l~~i~ 736 (854)
.+..+++|+.|++ .++......|..+..+++|+.|+|++|.+....+. ++.+++|+.|+|++|. +..++
T Consensus 104 ~~~~l~~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~ 173 (270)
T 2o6q_A 104 VFDQLVNLAELRL-DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVP 173 (270)
T ss_dssp TTTTCSSCCEEEC-CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCC
T ss_pred HcccccCCCEEEC-CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeC
Confidence 2234566777777 44444441334456777888888887766554433 6677777777777765 44343
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.57 E-value=6.7e-15 Score=153.16 Aligned_cols=114 Identities=20% Similarity=0.117 Sum_probs=69.5
Q ss_pred CCCCeEEEeccCCCCCCCCchhhcccCccEEEEecccCCCCCCC-CCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCc
Q 003037 671 PNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCDTMPP-LGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLH 749 (854)
Q Consensus 671 ~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~ 749 (854)
++|+.|++ .++......|.++..+++|+.|++++|.+....+. ++.+++|+.|++++|. +..++...+
T Consensus 133 ~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~--------- 201 (272)
T 3rfs_A 133 TNLTYLNL-AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVF--------- 201 (272)
T ss_dssp TTCCEEEC-CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTT---------
T ss_pred CCCCEEEC-CCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc-CCccCHHHH---------
Confidence 44455555 33333331233356677777777777766554443 5677788888887776 444443221
Q ss_pred cccCCccccCCCccceeeccccccccccccCCCccccCCCccceeeecccccCcCCCcCCCCCCC
Q 003037 750 GISTSSSVIAFPKLKQVLFYNICHWEEWDFGKGDSITIMPQLKKLEFERCTELKSVPEKLLRSTT 814 (854)
Q Consensus 750 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~ 814 (854)
..+++|+.|++.+++ |. +.+|+|+.|.++.|...+.+|..++.++.
T Consensus 202 --------~~l~~L~~L~l~~N~----~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 202 --------DRLTSLQYIWLHDNP----WD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp --------TTCTTCCEEECCSSC----BC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred --------hCCcCCCEEEccCCC----cc-------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 256777777777742 22 14678888888888766778887776554
No 81
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.57 E-value=2.9e-16 Score=183.42 Aligned_cols=302 Identities=17% Similarity=0.149 Sum_probs=150.1
Q ss_pred cCCCceEEEEecCCCCccc-CchhhhhcCCCcccEEEecCCCCccccccccccccccccccCCCcee-------------
Q 003037 479 SAKKLRSFLIHSTNKDLIS-PVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFL------------- 544 (854)
Q Consensus 479 ~~~~Lr~L~l~~~~~~~~~-~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L------------- 544 (854)
.+++|++|.+.++....+. ..++..+.++++|++|++++|. +..+|..+.++++|++|
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~--------~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 261 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE--------ILELVGFFKAAANLEEFCGGSLNEDIGMPE 261 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB--------GGGGHHHHHHCTTCCEEEECBCCCCTTCTT
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc--------HHHHHHHHhhhhHHHhhcccccccccchHH
Confidence 4556666666555421000 1234444556666666666655 44444444444445544
Q ss_pred --------------eecCCCCcccchhhhcCCCCcEEeecCccccc--ccccccccCCCCcccCceeecCCCCCCccc-c
Q 003037 545 --------------KLVWLDIEELPETCCELFNVQTLEVLDCRSFR--RLPQGFGKLVNLRNLSKFIVSRSGGSKLED-L 607 (854)
Q Consensus 545 --------------~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~--~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~-L 607 (854)
+++++....+|..+..+++|++|++++|. +. .++..+..+++|++|... .......+.. .
T Consensus 262 ~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~--~~~~~~~l~~~~ 338 (592)
T 3ogk_B 262 KYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR--NVIGDRGLEVLA 338 (592)
T ss_dssp SSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE--GGGHHHHHHHHH
T ss_pred HHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc--CccCHHHHHHHH
Confidence 44444444555555666666666666665 32 122224556666666322 0000000111 1
Q ss_pred cccccCCceeEEec----------ccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCC-CCCCCeE
Q 003037 608 RQLKHLRGSLKIQG----------LGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQP-PPNIESL 676 (854)
Q Consensus 608 ~~L~~L~~~L~i~~----------l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~-~~~L~~L 676 (854)
..+.+|+ .|.+.. ...+.. .........+++|+.|+++.+ ......+..+.. +++|+.|
T Consensus 339 ~~~~~L~-~L~L~~g~~~~~~~~~~~~~~~--~~~~~l~~~~~~L~~L~l~~~-------~l~~~~~~~l~~~~~~L~~L 408 (592)
T 3ogk_B 339 QYCKQLK-RLRIERGADEQGMEDEEGLVSQ--RGLIALAQGCQELEYMAVYVS-------DITNESLESIGTYLKNLCDF 408 (592)
T ss_dssp HHCTTCC-EEEEECCCCSSTTSSTTCCCCH--HHHHHHHHHCTTCSEEEEEES-------CCCHHHHHHHHHHCCSCCEE
T ss_pred HhCCCCC-EEEeecCccccccccccCccCH--HHHHHHHhhCccCeEEEeecC-------CccHHHHHHHHhhCCCCcEE
Confidence 2223343 555552 222211 122223345677777777554 122233333332 5677777
Q ss_pred EEecc---CCCCCCCC------chhhcccCccEEEEecccC--CC-CCCCC-CCCCCCCEEEEcCCCCceEeCccccCCC
Q 003037 677 RIEYH---YIGISGWP------SWIVSLNKLKKLVLYQFYL--CD-TMPPL-GKLPSLEILEIRGNWNVKRVGDEFLGVG 743 (854)
Q Consensus 677 ~l~~~---~~~~~~lp------~~~~~l~~L~~L~L~~~~~--~~-~l~~l-~~L~~L~~L~L~~~~~l~~i~~~~~~~~ 743 (854)
++ .+ +......| ..+..+++|+.|+|++|.. .. .+..+ ..+++|+.|+|++|. +...+...
T Consensus 409 ~l-~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~---- 482 (592)
T 3ogk_B 409 RL-VLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLME---- 482 (592)
T ss_dssp EE-EECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHH----
T ss_pred EE-eecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHH----
Confidence 77 32 11111122 2244677788888876542 11 12222 237778888887775 22111000
Q ss_pred CCCCCccccCCccccCCCccceeeccccccccccccCCCccccCCCccceeeecccccCcCC--CcCCCCCCCcCEEEEe
Q 003037 744 GGDHLHGISTSSSVIAFPKLKQVLFYNICHWEEWDFGKGDSITIMPQLKKLEFERCTELKSV--PEKLLRSTTLEELSIV 821 (854)
Q Consensus 744 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l--p~~l~~l~~L~~L~l~ 821 (854)
....+++|+.|++++|+ +..-.. ...+..+++|++|++++|. +... ..-...+|.|....+.
T Consensus 483 ------------~~~~~~~L~~L~l~~n~-l~~~~~--~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~ 546 (592)
T 3ogk_B 483 ------------FSRGCPNLQKLEMRGCC-FSERAI--AAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIP 546 (592)
T ss_dssp ------------HHTCCTTCCEEEEESCC-CBHHHH--HHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEEC
T ss_pred ------------HHhcCcccCeeeccCCC-CcHHHH--HHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEec
Confidence 02368999999999986 332110 0012368999999999996 4432 1122346777776666
Q ss_pred cC
Q 003037 822 EC 823 (854)
Q Consensus 822 ~c 823 (854)
..
T Consensus 547 ~~ 548 (592)
T 3ogk_B 547 SR 548 (592)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 82
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.56 E-value=1.2e-14 Score=151.72 Aligned_cols=75 Identities=17% Similarity=0.247 Sum_probs=45.0
Q ss_pred CcccEEEecCCCCccccccccccccc-cccccCCCceeeecCCCCcccch-hhhcCCCCcEEeecCcccccccc-ccccc
Q 003037 508 TCLRTLKITGISGEKRYFRIIVEIPK-EIKKLIHLRFLKLVWLDIEELPE-TCCELFNVQTLEVLDCRSFRRLP-QGFGK 584 (854)
Q Consensus 508 ~~Lr~L~L~~~~~~~~~~~~i~~lP~-~i~~L~~L~~L~L~~~~i~~lP~-~i~~L~~L~~L~l~~~~~l~~lp-~~i~~ 584 (854)
++|++|++++|. +..+|. .+.++.+|++|++++|.++.+|. .+.++++|++|++++|. +..+| ..+..
T Consensus 28 ~~l~~L~ls~n~--------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 98 (276)
T 2z62_A 28 FSTKNLDLSFNP--------LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSG 98 (276)
T ss_dssp TTCCEEECTTCC--------CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTT
T ss_pred CCccEEECCCCc--------ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcC
Confidence 356666776666 555544 56666667777777666666554 46666677777776666 44444 33444
Q ss_pred CCCCccc
Q 003037 585 LVNLRNL 591 (854)
Q Consensus 585 L~~L~~L 591 (854)
+++|++|
T Consensus 99 l~~L~~L 105 (276)
T 2z62_A 99 LSSLQKL 105 (276)
T ss_dssp CTTCCEE
T ss_pred CccccEE
Confidence 4444444
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.55 E-value=6.6e-15 Score=153.68 Aligned_cols=203 Identities=20% Similarity=0.141 Sum_probs=136.8
Q ss_pred CCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccc-cccccCCCceeeecCCCCcccc-hhh
Q 003037 481 KKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPK-EIKKLIHLRFLKLVWLDIEELP-ETC 558 (854)
Q Consensus 481 ~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~-~i~~L~~L~~L~L~~~~i~~lP-~~i 558 (854)
++|++|.+.++. +....+..|.++++|++|++++|. +..+|. .+.++.+|++|++++|.++.+| ..+
T Consensus 28 ~~l~~L~ls~n~---l~~~~~~~~~~l~~L~~L~l~~n~--------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (276)
T 2z62_A 28 FSTKNLDLSFNP---LRHLGSYSFFSFPELQVLDLSRCE--------IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 96 (276)
T ss_dssp TTCCEEECTTCC---CCEECTTTTTTCTTCSEEECTTCC--------CCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred CCccEEECCCCc---ccccCHhHhccccCCcEEECCCCc--------CCccCHHHccCCcCCCEEECCCCccCccChhhh
Confidence 578889988887 555455568888999999999988 777654 6788899999999999888776 568
Q ss_pred hcCCCCcEEeecCccccccccc-ccccCCCCcccCceeecCCCCCCcccccccccCCceeEEecccCCCChhHHHHhhcc
Q 003037 559 CELFNVQTLEVLDCRSFRRLPQ-GFGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLGNVRDADEAKSAELE 637 (854)
Q Consensus 559 ~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~ 637 (854)
.++++|++|++++|. +..++. .++.+++|++|... .+. +..+ ..+..+.
T Consensus 97 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~---~n~---------------------l~~~-----~l~~~~~ 146 (276)
T 2z62_A 97 SGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVA---HNL---------------------IQSF-----KLPEYFS 146 (276)
T ss_dssp TTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECC---SSC---------------------CCCC-----CCCGGGG
T ss_pred cCCccccEEECCCCC-ccccCchhcccCCCCCEEECc---CCc---------------------ccee-----cCchhhc
Confidence 888999999999887 666655 46777777777221 110 0000 0123455
Q ss_pred CCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCC-eEEEeccCCCCCCCCchhhcccCccEEEEecccCCCCCCC-C
Q 003037 638 KKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIE-SLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCDTMPP-L 715 (854)
Q Consensus 638 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l 715 (854)
.+++|+.|++++|..... ....+..+..++.|. .|++ +++.... +|.......+|+.|+|++|.+....+. +
T Consensus 147 ~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~l~l~L~l-s~n~l~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 220 (276)
T 2z62_A 147 NLTNLEHLDLSSNKIQSI----YCTDLRVLHQMPLLNLSLDL-SLNPMNF-IQPGAFKEIRLKELALDTNQLKSVPDGIF 220 (276)
T ss_dssp GCTTCCEEECCSSCCCEE----CGGGGHHHHTCTTCCEEEEC-CSSCCCE-ECTTSSCSCCEEEEECCSSCCSCCCTTTT
T ss_pred cCCCCCEEECCCCCCCcC----CHHHhhhhhhccccceeeec-CCCcccc-cCccccCCCcccEEECCCCceeecCHhHh
Confidence 667788888877621100 011112222233333 7888 5554444 555555566899999999987765544 6
Q ss_pred CCCCCCCEEEEcCCC
Q 003037 716 GKLPSLEILEIRGNW 730 (854)
Q Consensus 716 ~~L~~L~~L~L~~~~ 730 (854)
+.+++|+.|+|++|+
T Consensus 221 ~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 221 DRLTSLQKIWLHTNP 235 (276)
T ss_dssp TTCCSCCEEECCSSC
T ss_pred cccccccEEEccCCc
Confidence 889999999999987
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.55 E-value=2.5e-14 Score=148.63 Aligned_cols=174 Identities=25% Similarity=0.328 Sum_probs=97.0
Q ss_pred CcccEEEecCCCCccccccccccccc-cccccCCCceeeecCCCCcccchhh-hcCCCCcEEeecCcccccccccc-ccc
Q 003037 508 TCLRTLKITGISGEKRYFRIIVEIPK-EIKKLIHLRFLKLVWLDIEELPETC-CELFNVQTLEVLDCRSFRRLPQG-FGK 584 (854)
Q Consensus 508 ~~Lr~L~L~~~~~~~~~~~~i~~lP~-~i~~L~~L~~L~L~~~~i~~lP~~i-~~L~~L~~L~l~~~~~l~~lp~~-i~~ 584 (854)
++|+.|+|++|. +..+|. .++++.+|++|+|++|.++.+|..+ .++++|++|++++|. +..+|.. +..
T Consensus 37 ~~l~~L~l~~n~--------l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~ 107 (270)
T 2o6q_A 37 ADTKKLDLQSNK--------LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQ 107 (270)
T ss_dssp TTCSEEECCSSC--------CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred CCCCEEECcCCC--------CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHccc
Confidence 345555555555 444443 4555555555555555555555432 445555555555554 4444432 234
Q ss_pred CCCCcccCceeecCCCCCCcccccccccCCceeEEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHh
Q 003037 585 LVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAII 664 (854)
Q Consensus 585 L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 664 (854)
+++|++|... .+ .+.. .....+..+++|+.|+++++. ...++
T Consensus 108 l~~L~~L~l~---~n---------------------~l~~------~~~~~~~~l~~L~~L~Ls~n~--------l~~~~ 149 (270)
T 2o6q_A 108 LVNLAELRLD---RN---------------------QLKS------LPPRVFDSLTKLTYLSLGYNE--------LQSLP 149 (270)
T ss_dssp CSSCCEEECC---SS---------------------CCCC------CCTTTTTTCTTCCEEECCSSC--------CCCCC
T ss_pred ccCCCEEECC---CC---------------------ccCe------eCHHHhCcCcCCCEEECCCCc--------CCccC
Confidence 4444444110 00 0000 001123445556666666551 11111
Q ss_pred -hhCCCCCCCCeEEEeccCCCCCCCC-chhhcccCccEEEEecccCCCCCCC-CCCCCCCCEEEEcCCC
Q 003037 665 -EALQPPPNIESLRIEYHYIGISGWP-SWIVSLNKLKKLVLYQFYLCDTMPP-LGKLPSLEILEIRGNW 730 (854)
Q Consensus 665 -~~l~~~~~L~~L~l~~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~ 730 (854)
..+..+++|+.|++ .++.... +| ..+..+++|+.|+|++|.+....+. +..+++|+.|+|++|+
T Consensus 150 ~~~~~~l~~L~~L~L-~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 150 KGVFDKLTSLKELRL-YNNQLKR-VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTTTTCTTCCEEEC-CSSCCSC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred HhHccCCcccceeEe-cCCcCcE-eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 23556788888888 5555444 44 4477899999999999987665444 7889999999999987
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.55 E-value=2.5e-15 Score=161.93 Aligned_cols=243 Identities=17% Similarity=0.135 Sum_probs=138.2
Q ss_pred hhhhcCC--CcccEEEecCCCCccccccccccccccccccCCCceeeecCCCCcc--cchhhhcCCCCcEEeecCccccc
Q 003037 501 PVLFDQL--TCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIEE--LPETCCELFNVQTLEVLDCRSFR 576 (854)
Q Consensus 501 ~~~~~~l--~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~~--lP~~i~~L~~L~~L~l~~~~~l~ 576 (854)
+..+..+ ++|++|+++++. +...+..+.++.+|++|++++|.+.. +|..+.++++|++|++++|....
T Consensus 61 ~~~~~~~~~~~l~~L~l~~n~--------l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~ 132 (336)
T 2ast_B 61 PDVTGRLLSQGVIAFRCPRSF--------MDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD 132 (336)
T ss_dssp HHHHHHHHHTTCSEEECTTCE--------ECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCH
T ss_pred HHHHHhhhhccceEEEcCCcc--------ccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCH
Confidence 3344455 667777777766 55555556667777777777776652 66666777777777777776223
Q ss_pred ccccccccCCCCcccCceeecCCCCCCcccccccccCCceeEEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCC
Q 003037 577 RLPQGFGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIG 656 (854)
Q Consensus 577 ~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 656 (854)
..|..++.+++|++|.. .+...+. .......+..+++|+.|+++++..
T Consensus 133 ~~~~~l~~~~~L~~L~L--------------------------~~~~~l~--~~~l~~~~~~~~~L~~L~l~~~~~---- 180 (336)
T 2ast_B 133 PIVNTLAKNSNLVRLNL--------------------------SGCSGFS--EFALQTLLSSCSRLDELNLSWCFD---- 180 (336)
T ss_dssp HHHHHHTTCTTCSEEEC--------------------------TTCBSCC--HHHHHHHHHHCTTCCEEECCCCTT----
T ss_pred HHHHHHhcCCCCCEEEC--------------------------CCCCCCC--HHHHHHHHhcCCCCCEEcCCCCCC----
Confidence 45555666666665511 0000000 011233355566777777766510
Q ss_pred CcchHHHhhhCCCCC-CCCeEEEeccCC--CC-CCCCchhhcccCccEEEEecccC-CC-CCCCCCCCCCCCEEEEcCCC
Q 003037 657 DVNDKAIIEALQPPP-NIESLRIEYHYI--GI-SGWPSWIVSLNKLKKLVLYQFYL-CD-TMPPLGKLPSLEILEIRGNW 730 (854)
Q Consensus 657 ~~~~~~~~~~l~~~~-~L~~L~l~~~~~--~~-~~lp~~~~~l~~L~~L~L~~~~~-~~-~l~~l~~L~~L~~L~L~~~~ 730 (854)
.....+...+..++ +|++|++ .++. .. ..+|..+..+++|+.|+|++|.. .. .++.++.+++|+.|+|++|.
T Consensus 181 -l~~~~~~~~~~~l~~~L~~L~l-~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 181 -FTEKHVQVAVAHVSETITQLNL-SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp -CCHHHHHHHHHHSCTTCCEEEC-CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred -cChHHHHHHHHhcccCCCEEEe-CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 11222344455566 8888888 5542 11 22566667888899999988874 32 34457788899999998886
Q ss_pred CceEeCccccCCCCCCCCccccCCccccCCCccceeeccccccccccccCCCccccCC-CccceeeecccccCcCCCcCC
Q 003037 731 NVKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLKQVLFYNICHWEEWDFGKGDSITIM-PQLKKLEFERCTELKSVPEKL 809 (854)
Q Consensus 731 ~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~lp~~l 809 (854)
.+ .+..+. ....+++|+.|++.+| + +.. .+..+ .+|+.|++++|...+..|..+
T Consensus 259 ~~---~~~~~~--------------~l~~~~~L~~L~l~~~--i---~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 259 DI---IPETLL--------------ELGEIPTLKTLQVFGI--V---PDG---TLQLLKEALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp TC---CGGGGG--------------GGGGCTTCCEEECTTS--S---CTT---CHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred CC---CHHHHH--------------HHhcCCCCCEEeccCc--c---CHH---HHHHHHhhCcceEEecccCccccCCcc
Confidence 22 221110 0235788888888876 1 111 12223 236666677664434455444
Q ss_pred C
Q 003037 810 L 810 (854)
Q Consensus 810 ~ 810 (854)
.
T Consensus 314 ~ 314 (336)
T 2ast_B 314 G 314 (336)
T ss_dssp S
T ss_pred c
Confidence 3
No 86
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.54 E-value=2.2e-14 Score=150.39 Aligned_cols=197 Identities=18% Similarity=0.131 Sum_probs=106.8
Q ss_pred ccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccc-cccccccCCCceeeecCCCCcccch
Q 003037 478 FSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEI-PKEIKKLIHLRFLKLVWLDIEELPE 556 (854)
Q Consensus 478 ~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~l-P~~i~~L~~L~~L~L~~~~i~~lP~ 556 (854)
.++++++++.+.++. +.. +|..+ .+.|++|+|++|. +..+ |..+.++.+|++|+|++|.++.+|.
T Consensus 7 ~~l~~l~~l~~~~~~---l~~-ip~~~--~~~l~~L~L~~N~--------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 72 (290)
T 1p9a_G 7 SKVASHLEVNCDKRN---LTA-LPPDL--PKDTTILHLSENL--------LYTFSLATLMPYTRLTQLNLDRAELTKLQV 72 (290)
T ss_dssp ECSTTCCEEECTTSC---CSS-CCSCC--CTTCCEEECTTSC--------CSEEEGGGGTTCTTCCEEECTTSCCCEEEC
T ss_pred cccCCccEEECCCCC---CCc-CCCCC--CCCCCEEEcCCCc--------CCccCHHHhhcCCCCCEEECCCCccCcccC
Confidence 344455555555444 232 22212 2455555555555 4433 3345555555555555555555544
Q ss_pred hhhcCCCCcEEeecCcccccccccccccCCCCcccCceeecCCCCCCcccccccccCCceeEEecccCCCChhHHHHhhc
Q 003037 557 TCCELFNVQTLEVLDCRSFRRLPQGFGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLGNVRDADEAKSAEL 636 (854)
Q Consensus 557 ~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l 636 (854)
. +.+++|++|++++|. +..+|..+..+++|++|... .+ . ++ . .....+
T Consensus 73 ~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~---~N---~------l~------------~------l~~~~~ 120 (290)
T 1p9a_G 73 D-GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVS---FN---R------LT------------S------LPLGAL 120 (290)
T ss_dssp C-SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECC---SS---C------CC------------C------CCSSTT
T ss_pred C-CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECC---CC---c------Cc------------c------cCHHHH
Confidence 3 455555555555555 45555555555555444110 00 0 00 0 000123
Q ss_pred cCCCCCCcEEEEecCCCCCCCcchHHH-hhhCCCCCCCCeEEEeccCCCCCCCCch-hhcccCccEEEEecccCCCCCCC
Q 003037 637 EKKKNLLDLVLSFDGGQRIGDVNDKAI-IEALQPPPNIESLRIEYHYIGISGWPSW-IVSLNKLKKLVLYQFYLCDTMPP 714 (854)
Q Consensus 637 ~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~~~~l~~ 714 (854)
..+++|+.|+++.|. ...+ ...+..+++|+.|++ +++.... +|.. +..+++|+.|+|++|.+....+.
T Consensus 121 ~~l~~L~~L~L~~N~--------l~~~~~~~~~~l~~L~~L~L-~~N~l~~-l~~~~~~~l~~L~~L~L~~N~l~~ip~~ 190 (290)
T 1p9a_G 121 RGLGELQELYLKGNE--------LKTLPPGLLTPTPKLEKLSL-ANNNLTE-LPAGLLNGLENLDTLLLQENSLYTIPKG 190 (290)
T ss_dssp TTCTTCCEEECTTSC--------CCCCCTTTTTTCTTCCEEEC-TTSCCSC-CCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cCCCCCCEEECCCCC--------CCccChhhcccccCCCEEEC-CCCcCCc-cCHHHhcCcCCCCEEECCCCcCCccChh
Confidence 344555555555541 1111 123456778888888 5555555 6654 56799999999999987755555
Q ss_pred CCCCCCCCEEEEcCCC
Q 003037 715 LGKLPSLEILEIRGNW 730 (854)
Q Consensus 715 l~~L~~L~~L~L~~~~ 730 (854)
+..+++|+.|+|++|+
T Consensus 191 ~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 191 FFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTTTCCCSEEECCSCC
T ss_pred hcccccCCeEEeCCCC
Confidence 7788899999999887
No 87
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.53 E-value=5.7e-14 Score=151.90 Aligned_cols=236 Identities=13% Similarity=0.099 Sum_probs=119.8
Q ss_pred eEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccc-cccccCCCceeeecCCCCc-ccch-hhhc
Q 003037 484 RSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPK-EIKKLIHLRFLKLVWLDIE-ELPE-TCCE 560 (854)
Q Consensus 484 r~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~-~i~~L~~L~~L~L~~~~i~-~lP~-~i~~ 560 (854)
+++.+.++. +.. +|..+ .++|+.|+|++|. +..+|. .|.+|++|++|+|++|.+. .+|. .+.+
T Consensus 12 ~~v~C~~~~---Lt~-iP~~l--~~~l~~L~Ls~N~--------i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~ 77 (350)
T 4ay9_X 12 RVFLCQESK---VTE-IPSDL--PRNAIELRFVLTK--------LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSN 77 (350)
T ss_dssp TEEEEESTT---CCS-CCTTC--CTTCSEEEEESCC--------CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCS
T ss_pred CEEEecCCC---CCc-cCcCc--CCCCCEEEccCCc--------CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhc
Confidence 455555554 444 34333 3567777777776 667764 4667777777777777753 3553 3566
Q ss_pred CCCCcEEeecCccccccccc-ccccCCCCcccCceeecCCCCCCcccccccccCCceeEEecccCCCChhHHHHhhccCC
Q 003037 561 LFNVQTLEVLDCRSFRRLPQ-GFGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLGNVRDADEAKSAELEKK 639 (854)
Q Consensus 561 L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~ 639 (854)
|++|+.+...+++.+..+|. .+..+++|++|... -+.+..+.. ..+...
T Consensus 78 L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~------------------------~n~l~~~~~------~~~~~~ 127 (350)
T 4ay9_X 78 LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS------------------------NTGIKHLPD------VHKIHS 127 (350)
T ss_dssp CTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEE------------------------EECCSSCCC------CTTCCB
T ss_pred chhhhhhhcccCCcccccCchhhhhcccccccccc------------------------ccccccCCc------hhhccc
Confidence 66666544333333666643 34566666665211 111111111 011223
Q ss_pred CCCCcEEEEecCCCCCCCcchHHHh-hhCCCC-CCCCeEEEeccCCCCCCCCchhhcccCccEEEEecccCCCCCCC--C
Q 003037 640 KNLLDLVLSFDGGQRIGDVNDKAII-EALQPP-PNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCDTMPP--L 715 (854)
Q Consensus 640 ~~L~~L~l~~~~~~~~~~~~~~~~~-~~l~~~-~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~--l 715 (854)
.++..|++..+. ....+. ..+..+ ..++.|++ +++.... +|.......+|+.|.++++...+.+|. +
T Consensus 128 ~~l~~l~l~~~~-------~i~~l~~~~f~~~~~~l~~L~L-~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f 198 (350)
T 4ay9_X 128 LQKVLLDIQDNI-------NIHTIERNSFVGLSFESVILWL-NKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVF 198 (350)
T ss_dssp SSCEEEEEESCT-------TCCEECTTSSTTSBSSCEEEEC-CSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTT
T ss_pred chhhhhhhcccc-------ccccccccchhhcchhhhhhcc-ccccccC-CChhhccccchhHHhhccCCcccCCCHHHh
Confidence 344445554330 011111 112222 34666666 4444333 555444555666666665555555543 5
Q ss_pred CCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCCCccceeeccccccccccccCCCccccCCCccceee
Q 003037 716 GKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLKQVLFYNICHWEEWDFGKGDSITIMPQLKKLE 795 (854)
Q Consensus 716 ~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~ 795 (854)
+.+++|+.|+|++|. +..+|.. .|.+|+.|.+.++.+++.++. +..+++|+.++
T Consensus 199 ~~l~~L~~LdLs~N~-l~~lp~~--------------------~~~~L~~L~~l~~~~l~~lP~-----l~~l~~L~~l~ 252 (350)
T 4ay9_X 199 HGASGPVILDISRTR-IHSLPSY--------------------GLENLKKLRARSTYNLKKLPT-----LEKLVALMEAS 252 (350)
T ss_dssp TTEECCSEEECTTSC-CCCCCSS--------------------SCTTCCEEECTTCTTCCCCCC-----TTTCCSCCEEE
T ss_pred ccCcccchhhcCCCC-cCccChh--------------------hhccchHhhhccCCCcCcCCC-----chhCcChhhCc
Confidence 666667777776665 5555532 355666666666555555553 22466666666
Q ss_pred ecc
Q 003037 796 FER 798 (854)
Q Consensus 796 l~~ 798 (854)
+.+
T Consensus 253 l~~ 255 (350)
T 4ay9_X 253 LTY 255 (350)
T ss_dssp CSC
T ss_pred CCC
Confidence 643
No 88
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.53 E-value=1.2e-14 Score=164.38 Aligned_cols=214 Identities=16% Similarity=0.097 Sum_probs=137.0
Q ss_pred CCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccccCCCceeeecCCCCcccchhhhc
Q 003037 481 KKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIEELPETCCE 560 (854)
Q Consensus 481 ~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~~lP~~i~~ 560 (854)
++|++|++.+|. +....|..|..+++|++|+|++|. +..+++ ++.+++|++|+|++|.++.+|..
T Consensus 34 ~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~N~--------l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~--- 98 (487)
T 3oja_A 34 WNVKELDLSGNP---LSQISAADLAPFTKLELLNLSSNV--------LYETLD-LESLSTLRTLDLNNNYVQELLVG--- 98 (487)
T ss_dssp GGCCEEECCSSC---CCCCCGGGGTTCTTCCEEECTTSC--------CEEEEE-CTTCTTCCEEECCSSEEEEEEEC---
T ss_pred CCccEEEeeCCc---CCCCCHHHHhCCCCCCEEEeeCCC--------CCCCcc-cccCCCCCEEEecCCcCCCCCCC---
Confidence 367777777776 455455667777777777777777 555544 77777777777777777766642
Q ss_pred CCCCcEEeecCcccccccccccccCCCCcccCceeecCCCCCCcccccccccCCceeEEecccCCCChhHHHHhhcc-CC
Q 003037 561 LFNVQTLEVLDCRSFRRLPQGFGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLGNVRDADEAKSAELE-KK 639 (854)
Q Consensus 561 L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~-~~ 639 (854)
++|++|++++|. +..+|.. .+++|+.|........ +.....+..+.+|+ .|.+.+ +.+....+..+. .+
T Consensus 99 -~~L~~L~L~~N~-l~~~~~~--~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~-~L~Ls~----N~l~~~~~~~l~~~l 168 (487)
T 3oja_A 99 -PSIETLHAANNN-ISRVSCS--RGQGKKNIYLANNKIT-MLRDLDEGCRSRVQ-YLDLKL----NEIDTVNFAELAASS 168 (487)
T ss_dssp -TTCCEEECCSSC-CCCEEEC--CCSSCEEEECCSSCCC-SGGGBCGGGGSSEE-EEECTT----SCCCEEEGGGGGGGT
T ss_pred -CCcCEEECcCCc-CCCCCcc--ccCCCCEEECCCCCCC-CCCchhhcCCCCCC-EEECCC----CCCCCcChHHHhhhC
Confidence 677777777776 5555542 3556666532211111 11111222333333 444433 122222233443 67
Q ss_pred CCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCchhhcccCccEEEEecccCCCCCCCCCCCC
Q 003037 640 KNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCDTMPPLGKLP 719 (854)
Q Consensus 640 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~ 719 (854)
++|+.|++++|. ...+ .....+++|+.|+| +++.... +|..+..+++|+.|+|++|.+...++.++.++
T Consensus 169 ~~L~~L~Ls~N~--------l~~~-~~~~~l~~L~~L~L-s~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~ 237 (487)
T 3oja_A 169 DTLEHLNLQYNF--------IYDV-KGQVVFAKLKTLDL-SSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQ 237 (487)
T ss_dssp TTCCEEECTTSC--------CCEE-ECCCCCTTCCEEEC-CSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCT
T ss_pred CcccEEecCCCc--------cccc-cccccCCCCCEEEC-CCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCC
Confidence 899999998872 1111 33445889999999 6666555 77778899999999999998876545588899
Q ss_pred CCCEEEEcCCC
Q 003037 720 SLEILEIRGNW 730 (854)
Q Consensus 720 ~L~~L~L~~~~ 730 (854)
+|+.|++++|.
T Consensus 238 ~L~~L~l~~N~ 248 (487)
T 3oja_A 238 NLEHFDLRGNG 248 (487)
T ss_dssp TCCEEECTTCC
T ss_pred CCCEEEcCCCC
Confidence 99999999987
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.52 E-value=3.4e-14 Score=150.54 Aligned_cols=192 Identities=16% Similarity=0.169 Sum_probs=148.9
Q ss_pred cCceEEEEeeeCCCCCCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccc
Q 003037 458 VEKVRHSMLKLGYDSFPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKK 537 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~ 537 (854)
..+++++.+.++.....+.+..+++|++|.+.+|. +.. ++. +..+++|++|+|++|. +..+| .+.+
T Consensus 40 l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~---i~~-~~~-~~~l~~L~~L~L~~n~--------l~~~~-~~~~ 105 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQ---ITD-LAP-LKNLTKITELELSGNP--------LKNVS-AIAG 105 (308)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSC---CCC-CGG-GTTCCSCCEEECCSCC--------CSCCG-GGTT
T ss_pred cCCcCEEEeeCCCccCchhhhccCCCCEEEccCCc---CCC-Chh-HccCCCCCEEEccCCc--------CCCch-hhcC
Confidence 45788888888877655678899999999999998 555 344 8999999999999999 88876 6899
Q ss_pred cCCCceeeecCCCCcccchhhhcCCCCcEEeecCcccccccccccccCCCCcccCceeecCCCCCCcccccccccCCcee
Q 003037 538 LIHLRFLKLVWLDIEELPETCCELFNVQTLEVLDCRSFRRLPQGFGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSL 617 (854)
Q Consensus 538 L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L 617 (854)
+.+|++|++++|.++.+|. +.++++|++|++++|. +..+|. ++.+++|++|.. ..+ .+
T Consensus 106 l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l---~~n---~l------------- 163 (308)
T 1h6u_A 106 LQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSI---GNA---QV------------- 163 (308)
T ss_dssp CTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEEC---CSS---CC-------------
T ss_pred CCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEc---cCC---cC-------------
Confidence 9999999999999999886 9999999999999998 788876 778888887722 111 00
Q ss_pred EEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCchhhcccC
Q 003037 618 KIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWIVSLNK 697 (854)
Q Consensus 618 ~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~ 697 (854)
... ..+..+++|+.|+++.|.. ..+. .+..+++|+.|++ +++.... ++. +..+++
T Consensus 164 --------~~~-----~~l~~l~~L~~L~l~~n~l--------~~~~-~l~~l~~L~~L~L-~~N~l~~-~~~-l~~l~~ 218 (308)
T 1h6u_A 164 --------SDL-----TPLANLSKLTTLKADDNKI--------SDIS-PLASLPNLIEVHL-KNNQISD-VSP-LANTSN 218 (308)
T ss_dssp --------CCC-----GGGTTCTTCCEEECCSSCC--------CCCG-GGGGCTTCCEEEC-TTSCCCB-CGG-GTTCTT
T ss_pred --------CCC-----hhhcCCCCCCEEECCCCcc--------CcCh-hhcCCCCCCEEEc-cCCccCc-ccc-ccCCCC
Confidence 000 0155678888999987721 1111 2566789999999 6666555 653 788999
Q ss_pred ccEEEEecccCCC
Q 003037 698 LKKLVLYQFYLCD 710 (854)
Q Consensus 698 L~~L~L~~~~~~~ 710 (854)
|+.|+|++|.+..
T Consensus 219 L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 219 LFIVTLTNQTITN 231 (308)
T ss_dssp CCEEEEEEEEEEC
T ss_pred CCEEEccCCeeec
Confidence 9999999998654
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.51 E-value=3.1e-14 Score=145.03 Aligned_cols=200 Identities=11% Similarity=0.112 Sum_probs=133.6
Q ss_pred CCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccc-cccccCCCceeeecC-CCCcccch-h
Q 003037 481 KKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPK-EIKKLIHLRFLKLVW-LDIEELPE-T 557 (854)
Q Consensus 481 ~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~-~i~~L~~L~~L~L~~-~~i~~lP~-~ 557 (854)
.+|++|.+.++. +..+.+..|.++++|++|++++|.. +..+|. .+.++++|++|++++ |.++.+|. .
T Consensus 31 ~~l~~L~l~~n~---l~~i~~~~~~~l~~L~~L~l~~n~~-------l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 31 PSTQTLKLIETH---LRTIPSHAFSNLPNISRIYVSIDVT-------LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp TTCCEEEEESCC---CSEECTTTTTTCTTCCEEEEECCSS-------CCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred CcccEEEEeCCc---ceEECHHHccCCCCCcEEeCCCCCC-------cceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 478899998887 5555555788899999999998842 666665 678889999999998 88888874 5
Q ss_pred hhcCCCCcEEeecCcccccccccccccCCCCcccCceeecCCCCCCcccccccccCCceeEEecccCCCChhHHHHhhcc
Q 003037 558 CCELFNVQTLEVLDCRSFRRLPQGFGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLGNVRDADEAKSAELE 637 (854)
Q Consensus 558 i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~ 637 (854)
+.++++|++|++++|. +..+|. ++.+++|+.|..+.+..+ ..+. ......+.
T Consensus 101 f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N-----------------------~~l~---~i~~~~~~ 152 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDN-----------------------PYMT---SIPVNAFQ 152 (239)
T ss_dssp EECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESC-----------------------TTCC---EECTTTTT
T ss_pred hCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCC-----------------------cchh---hcCccccc
Confidence 7788999999999888 777886 666666663212122111 0000 01112355
Q ss_pred CCCCCC-cEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCC-CCCCCC-chhhcc-cCccEEEEecccCCCCCC
Q 003037 638 KKKNLL-DLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYI-GISGWP-SWIVSL-NKLKKLVLYQFYLCDTMP 713 (854)
Q Consensus 638 ~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~~lp-~~~~~l-~~L~~L~L~~~~~~~~l~ 713 (854)
.+++|+ .|+++.+. ...++......++|+.|++ .++. ... +| ..+..+ ++|+.|++++|.+.. +|
T Consensus 153 ~l~~L~~~L~l~~n~--------l~~i~~~~~~~~~L~~L~L-~~n~~l~~-i~~~~~~~l~~~L~~L~l~~N~l~~-l~ 221 (239)
T 2xwt_C 153 GLCNETLTLKLYNNG--------FTSVQGYAFNGTKLDAVYL-NKNKYLTV-IDKDAFGGVYSGPSLLDVSQTSVTA-LP 221 (239)
T ss_dssp TTBSSEEEEECCSCC--------CCEECTTTTTTCEEEEEEC-TTCTTCCE-ECTTTTTTCSBCCSEEECTTCCCCC-CC
T ss_pred chhcceeEEEcCCCC--------CcccCHhhcCCCCCCEEEc-CCCCCccc-CCHHHhhccccCCcEEECCCCcccc-CC
Confidence 677788 88887661 1123333223368888888 5552 433 43 456677 889999998887654 33
Q ss_pred CCCCCCCCCEEEEcCCC
Q 003037 714 PLGKLPSLEILEIRGNW 730 (854)
Q Consensus 714 ~l~~L~~L~~L~L~~~~ 730 (854)
.. .+++|+.|++.++.
T Consensus 222 ~~-~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 222 SK-GLEHLKELIARNTW 237 (239)
T ss_dssp CT-TCTTCSEEECTTC-
T ss_pred hh-HhccCceeeccCcc
Confidence 32 68888888888765
No 91
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.51 E-value=3.6e-15 Score=174.14 Aligned_cols=348 Identities=13% Similarity=0.069 Sum_probs=176.0
Q ss_pred cCceEEEEeeeCCCC--CCcccc-cCCCceEEEEecCCCCcccC-chhhhhcCCCcccEEEecCCCCccccccccccccc
Q 003037 458 VEKVRHSMLKLGYDS--FPDSIF-SAKKLRSFLIHSTNKDLISP-VLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPK 533 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~--~~~~~~-~~~~Lr~L~l~~~~~~~~~~-~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~ 533 (854)
..+++++.+..+... .+..+. .+++|++|.+.+|.. +.. .++..+.++++|++|+|++|...... ...++.
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~--~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~---~~~l~~ 178 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG--FSTDGLAAIAATCRNLKELDLRESDVDDVS---GHWLSH 178 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE--EEHHHHHHHHHHCTTCCEEECTTCEEECCC---GGGGGG
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC--CCHHHHHHHHHhCCCCCEEeCcCCccCCcc---hHHHHH
Confidence 346777777766543 122332 577888888887742 211 14555567888888888887611000 111333
Q ss_pred cccccCCCceeeecCCC--Cc--ccchhhhcCCCCcEEeecCcccccccccccccCCCCcccCceeec------------
Q 003037 534 EIKKLIHLRFLKLVWLD--IE--ELPETCCELFNVQTLEVLDCRSFRRLPQGFGKLVNLRNLSKFIVS------------ 597 (854)
Q Consensus 534 ~i~~L~~L~~L~L~~~~--i~--~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~------------ 597 (854)
....+++|++|++++|. +. .++.-+.++++|++|++++|..+..+|..+.++++|++|......
T Consensus 179 ~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 258 (594)
T 2p1m_B 179 FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLS 258 (594)
T ss_dssp SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHH
T ss_pred HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHH
Confidence 34466788888888776 22 233334567888888888875566666666666777666311110
Q ss_pred ----------------CCCCCCccc-ccccccCCceeEEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcch
Q 003037 598 ----------------RSGGSKLED-LRQLKHLRGSLKIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVND 660 (854)
Q Consensus 598 ----------------~~~~~~l~~-L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 660 (854)
......+.. ...+.+|+ .|.+.+.. +. .......+..+++|+.|+++.+ ..
T Consensus 259 ~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~-~L~L~~~~-l~--~~~l~~~~~~~~~L~~L~l~~~--------~~ 326 (594)
T 2p1m_B 259 VALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLT-TLNLSYAT-VQ--SYDLVKLLCQCPKLQRLWVLDY--------IE 326 (594)
T ss_dssp HHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCC-EEECTTCC-CC--HHHHHHHHTTCTTCCEEEEEGG--------GH
T ss_pred HHHhcCCCcccccCCcccchhhHHHHHHhhCCCC-EEEccCCC-CC--HHHHHHHHhcCCCcCEEeCcCc--------cC
Confidence 000001111 11233344 55554432 21 1223333556777777777765 11
Q ss_pred HHHhhh-CCCCCCCCeEEEeccCC-----CCCCCC-----chhhcccCccEEEEecccCCCC-CCCCC-CCCCCCEEEEc
Q 003037 661 KAIIEA-LQPPPNIESLRIEYHYI-----GISGWP-----SWIVSLNKLKKLVLYQFYLCDT-MPPLG-KLPSLEILEIR 727 (854)
Q Consensus 661 ~~~~~~-l~~~~~L~~L~l~~~~~-----~~~~lp-----~~~~~l~~L~~L~L~~~~~~~~-l~~l~-~L~~L~~L~L~ 727 (854)
...+.. ...+++|+.|++ .++. ....+. .....+++|+.|.++.+.+... +..+. .+++|+.|+|+
T Consensus 327 ~~~l~~l~~~~~~L~~L~L-~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 327 DAGLEVLASTCKDLRELRV-FPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEE-ECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHHHHhCCCCCEEEE-ecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence 222222 223567777777 3210 000011 1112366777775554443321 11222 36777777777
Q ss_pred -----CCCCceEeCcc------ccCCCCCCCCccccCCc-----cc-cCCCccceeeccccccccccccCCCccc-cCCC
Q 003037 728 -----GNWNVKRVGDE------FLGVGGGDHLHGISTSS-----SV-IAFPKLKQVLFYNICHWEEWDFGKGDSI-TIMP 789 (854)
Q Consensus 728 -----~~~~l~~i~~~------~~~~~~~~~l~~~~~~~-----~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~-~~l~ 789 (854)
+|..+...+.. +.....++.+....... .. ..+++|+.|.+.++. +..... ..+ ..++
T Consensus 406 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~---~~l~~~~~ 481 (594)
T 2p1m_B 406 IIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGM---HHVLSGCD 481 (594)
T ss_dssp ESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHH---HHHHHHCT
T ss_pred cccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCC-CcHHHH---HHHHhcCC
Confidence 33333322210 00011111111111000 01 126778888887753 211110 011 3589
Q ss_pred ccceeeecccccCcC-CCcCCCCCCCcCEEEEecCcchH
Q 003037 790 QLKKLEFERCTELKS-VPEKLLRSTTLEELSIVECPILV 827 (854)
Q Consensus 790 ~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~l~~c~~l~ 827 (854)
+|++|+|++|+.... ++..+..+++|++|++++|+...
T Consensus 482 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 482 SLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp TCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred CcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 999999999975222 22344568999999999998643
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.50 E-value=1.3e-13 Score=148.94 Aligned_cols=205 Identities=15% Similarity=0.101 Sum_probs=104.5
Q ss_pred CCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccc-cccccCCCce-eeecCCCCcccc-hh
Q 003037 481 KKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPK-EIKKLIHLRF-LKLVWLDIEELP-ET 557 (854)
Q Consensus 481 ~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~-~i~~L~~L~~-L~L~~~~i~~lP-~~ 557 (854)
+++++|.+.+|. +..+.+..|.++++|++|+|++|.. .+.+|. .+.+|.+|+. +.+.+|.++.+| ..
T Consensus 30 ~~l~~L~Ls~N~---i~~i~~~~f~~l~~L~~L~Ls~N~i-------~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~ 99 (350)
T 4ay9_X 30 RNAIELRFVLTK---LRVIQKGAFSGFGDLEKIEISQNDV-------LEVIEADVFSNLPKLHEIRIEKANNLLYINPEA 99 (350)
T ss_dssp TTCSEEEEESCC---CSEECTTSSTTCTTCCEEEEECCTT-------CCEECTTSBCSCTTCCEEEEEEETTCCEECTTS
T ss_pred CCCCEEEccCCc---CCCcCHHHHcCCCCCCEEECcCCCC-------CCccChhHhhcchhhhhhhcccCCcccccCchh
Confidence 567777777766 4443344567777777777777762 233443 4566666554 445556676664 34
Q ss_pred hhcCCCCcEEeecCcccccccccc-cccCCCCcccCceeecCCCCCCcccccccccCCceeEEecccCCCChhHHHHhhc
Q 003037 558 CCELFNVQTLEVLDCRSFRRLPQG-FGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLGNVRDADEAKSAEL 636 (854)
Q Consensus 558 i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l 636 (854)
+..+++|++|++++|. +..+|.. +..+.++..| .+.....+... ....+
T Consensus 100 f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l--------------------------~l~~~~~i~~l---~~~~f 149 (350)
T 4ay9_X 100 FQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLL--------------------------DIQDNINIHTI---ERNSF 149 (350)
T ss_dssp BCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEE--------------------------EEESCTTCCEE---CTTSS
T ss_pred hhhccccccccccccc-cccCCchhhcccchhhhh--------------------------hhccccccccc---cccch
Confidence 5667777777777766 5555542 1122222222 11110000000 00112
Q ss_pred cCC-CCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCc-hhhcccCccEEEEecccCCCCCCC
Q 003037 637 EKK-KNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPS-WIVSLNKLKKLVLYQFYLCDTMPP 714 (854)
Q Consensus 637 ~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~l~~ 714 (854)
..+ ..++.|+++.+ ....++.......+|+.|.+ .++.....+|. .+..+++|+.|+|++|.+.. +|.
T Consensus 150 ~~~~~~l~~L~L~~N--------~i~~i~~~~f~~~~L~~l~l-~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~ 219 (350)
T 4ay9_X 150 VGLSFESVILWLNKN--------GIQEIHNSAFNGTQLDELNL-SDNNNLEELPNDVFHGASGPVILDISRTRIHS-LPS 219 (350)
T ss_dssp TTSBSSCEEEECCSS--------CCCEECTTSSTTEEEEEEEC-TTCTTCCCCCTTTTTTEECCSEEECTTSCCCC-CCS
T ss_pred hhcchhhhhhccccc--------cccCCChhhccccchhHHhh-ccCCcccCCCHHHhccCcccchhhcCCCCcCc-cCh
Confidence 222 24566666655 12223333334456677766 33322222554 34567777777777775433 332
Q ss_pred CCCCCCCCEEEEcCCCCceEeC
Q 003037 715 LGKLPSLEILEIRGNWNVKRVG 736 (854)
Q Consensus 715 l~~L~~L~~L~L~~~~~l~~i~ 736 (854)
+.+.+|+.|.+.++..++.+|
T Consensus 220 -~~~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 220 -YGLENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp -SSCTTCCEEECTTCTTCCCCC
T ss_pred -hhhccchHhhhccCCCcCcCC
Confidence 235566666666666565555
No 93
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.50 E-value=1.6e-14 Score=150.28 Aligned_cols=101 Identities=25% Similarity=0.435 Sum_probs=67.8
Q ss_pred ccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccccCCCceeeecCCCCcccc
Q 003037 476 SIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIEELP 555 (854)
Q Consensus 476 ~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~~lP 555 (854)
....+++|+.|.+.++. +.. ++ .+..+++|++|++++|. +..+| .++++++|++|++++|.++.+|
T Consensus 36 ~~~~l~~L~~L~l~~~~---i~~-~~-~l~~l~~L~~L~l~~n~--------l~~~~-~l~~l~~L~~L~L~~n~l~~~~ 101 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSD---IKS-VQ-GIQYLPNVRYLALGGNK--------LHDIS-ALKELTNLTYLILTGNQLQSLP 101 (272)
T ss_dssp CHHHHTTCCEEECTTSC---CCC-CT-TGGGCTTCCEEECTTSC--------CCCCG-GGTTCTTCCEEECTTSCCCCCC
T ss_pred ccccccceeeeeeCCCC---ccc-cc-ccccCCCCcEEECCCCC--------CCCch-hhcCCCCCCEEECCCCccCccC
Confidence 34566777777777766 333 22 26677777777777777 66654 5777777777777777777766
Q ss_pred hh-hhcCCCCcEEeecCcccccccccc-cccCCCCccc
Q 003037 556 ET-CCELFNVQTLEVLDCRSFRRLPQG-FGKLVNLRNL 591 (854)
Q Consensus 556 ~~-i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L 591 (854)
.. ++++++|++|++++|. +..+|.. ++.+++|++|
T Consensus 102 ~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 138 (272)
T 3rfs_A 102 NGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYL 138 (272)
T ss_dssp TTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEE
T ss_pred hhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEE
Confidence 54 5777777777777776 5666554 4556666655
No 94
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.50 E-value=4.6e-12 Score=139.28 Aligned_cols=299 Identities=13% Similarity=0.034 Sum_probs=186.0
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccc-cCeeEEEEeCCccCHHHHHHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINH-FEKRIWVCVSDPFDEFRIAKA 174 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~s~~~~~~~~~~~ 174 (854)
++.++||+++++++..++.....+..+..+.+.|+|++|+||||||+.+++. .... -..++|++++...+...++..
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHH
Confidence 4789999999999999987532210122348999999999999999999984 3222 125678887777788899999
Q ss_pred HHHHhcCCCCC-CccHHHHHHHHHHHhc--CCeEEEEEecCCCcChhhHHHHHHhhcCCC----CCcEEEEecccHHHHh
Q 003037 175 IIEALEGSTPS-LGELNSLLERIYASIA--RKKFLLVLDDVWTEDYNKWETFQRCLKNGL----RGSKILVTTRKMTVAQ 247 (854)
Q Consensus 175 i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~----~gs~ilvTtR~~~v~~ 247 (854)
++..++...+. ......+...+.+.+. +++.+||||+++..+......+...+.... .+..||++|+......
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 99988654322 2345556666666554 568899999997655556666666554322 4667888887654333
Q ss_pred hcc-------CcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhc---------CCCcHHHHHHHhhhc
Q 003037 248 MMQ-------SNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKC---------KGLPLAAKTIGSLLR 311 (854)
Q Consensus 248 ~~~-------~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~---------~GlPLai~~~~~~l~ 311 (854)
.+. ....+.+.+++.++..+++...+...... .....+..+.|++.+ +|.|..+..+.....
T Consensus 174 ~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 174 NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAE--GSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCT--TSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 221 12379999999999999998765320000 011134566677788 788755544332211
Q ss_pred ------c--CCCHHHHHHHHhhhcCCccccccCccchhhcccCCChHHHHHHHhhhhcCC---CCceechHHHHHHHHH-
Q 003037 312 ------F--KRSSREWQSILDSEIGQLEEFERGLLPPLLLSYNDMPSVIKWSFSYCAIFP---KDYNIEKDELIKLWLA- 379 (854)
Q Consensus 312 ------~--~~~~~~w~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~k~cf~~~s~fp---~~~~i~~~~li~~Wia- 379 (854)
. .-+.+....+..... ...+.-.+..|+.+.+.++..++.+. .+..+....+...+..
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~~----------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~ 321 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEVL----------FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIV 321 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHS----------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHh----------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHH
Confidence 1 113333333333211 11223345678888888777777554 2224555666555433
Q ss_pred ---hCcccCCCCchHHHHHHHHHHHHHhccccccccc
Q 003037 380 ---QGYIRPKENKELEMIVEEYFDYLAARSFFQEFER 413 (854)
Q Consensus 380 ---~g~i~~~~~~~~e~~~~~~l~~L~~~sli~~~~~ 413 (854)
.|... .+ .....+++++|...++|.....
T Consensus 322 ~~~~~~~~----~~-~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 322 CEEYGERP----RV-HSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp HHHTTCCC----CC-HHHHHHHHHHHHHTTSSEEEEC
T ss_pred HHHcCCCC----CC-HHHHHHHHHHHHhCCCeEEeee
Confidence 12111 11 2345678999999999987654
No 95
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.47 E-value=8.1e-12 Score=137.16 Aligned_cols=296 Identities=14% Similarity=0.063 Sum_probs=179.1
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccc----cccCeeEEEEeCCccCHHHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVI----NHFEKRIWVCVSDPFDEFRI 171 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~s~~~~~~~~ 171 (854)
++.++||+++++++..++..... ....+.+.|+|++|+||||+|+.+++..... +.-...+|+++....+...+
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR--GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS--SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 47899999999999999865321 2345678999999999999999999842111 00124668888888888999
Q ss_pred HHHHHHHhcCCCCC-CccHHHHHHHHHHHh--cCCeEEEEEecCCCcChh--hHHHHHHhhcC---C--CCCcEEEEecc
Q 003037 172 AKAIIEALEGSTPS-LGELNSLLERIYASI--ARKKFLLVLDDVWTEDYN--KWETFQRCLKN---G--LRGSKILVTTR 241 (854)
Q Consensus 172 ~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~~~--~~~~l~~~l~~---~--~~gs~ilvTtR 241 (854)
+..++..++...+. ......+...+.+.+ .+++.+|||||++.-... ..+.+...+.. . ..+..+|.||+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~ 175 (387)
T 2v1u_A 96 ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN 175 (387)
T ss_dssp HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence 99999999764332 233556666677666 356899999999542211 22333333321 1 34567788877
Q ss_pred cHHHHhh-----ccC--cceEecCCCCHHHHHHHHHHHhcC--CCCCCCchHHHHHHHHHHhhcC---CCcHHH-HHHHh
Q 003037 242 KMTVAQM-----MQS--NDVILIRELSEQACWSLFEQLAFF--GRPRSECEQLIEIGRKIVGKCK---GLPLAA-KTIGS 308 (854)
Q Consensus 242 ~~~v~~~-----~~~--~~~~~l~~L~~~e~~~l~~~~~~~--~~~~~~~~~~~~~~~~I~~~~~---GlPLai-~~~~~ 308 (854)
....... ... ...+.+++++.++..+++...+.. ....... +..+.|+++++ |.|..+ ..+..
T Consensus 176 ~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~G~~r~~~~~l~~ 251 (387)
T 2v1u_A 176 SLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP----DVVPLCAALAAREHGDARRALDLLRV 251 (387)
T ss_dssp CSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS----SHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred CCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH----HHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 6522111 111 147899999999999999877431 1111111 23455667777 999433 33222
Q ss_pred hh--c---c--CCCHHHHHHHHhhhcCCccccccCccchhhcccCCChHHHHHHHhhhh-cCCCCceechHHHHHHHHH-
Q 003037 309 LL--R---F--KRSSREWQSILDSEIGQLEEFERGLLPPLLLSYNDMPSVIKWSFSYCA-IFPKDYNIEKDELIKLWLA- 379 (854)
Q Consensus 309 ~l--~---~--~~~~~~w~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~k~cf~~~s-~fp~~~~i~~~~li~~Wia- 379 (854)
.. . . .-+.+.+..+++.... ..+.-++..|+.+.+..+..++ ++.....+....+.+....
T Consensus 252 a~~~a~~~~~~~i~~~~v~~a~~~~~~----------~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~ 321 (387)
T 2v1u_A 252 AGEIAERRREERVRREHVYSARAEIER----------DRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKEL 321 (387)
T ss_dssp HHHHHHHTTCSCBCHHHHHHHHHHHHH----------HHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHHhh----------chHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 21 1 1 1255666665544211 1244466788888887776665 4432234544443333221
Q ss_pred ---hCcccCCCCchHHHHHHHHHHHHHhcccccccc
Q 003037 380 ---QGYIRPKENKELEMIVEEYFDYLAARSFFQEFE 412 (854)
Q Consensus 380 ---~g~i~~~~~~~~e~~~~~~l~~L~~~sli~~~~ 412 (854)
.| +. ......+..+++.|...|++....
T Consensus 322 ~~~~~-~~----~~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 322 TSTLG-LE----HVTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HHHTT-CC----CCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHhcC-CC----CCCHHHHHHHHHHHHhCCCeEEEe
Confidence 22 11 112345678999999999998754
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.47 E-value=2.7e-15 Score=164.90 Aligned_cols=93 Identities=13% Similarity=0.110 Sum_probs=49.3
Q ss_pred CcccccCCCceEEEEecCCCCcccCc----hhhhhcCCCcccEEEecCCCCcccccccccccccc-------ccccCCCc
Q 003037 474 PDSIFSAKKLRSFLIHSTNKDLISPV----LPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKE-------IKKLIHLR 542 (854)
Q Consensus 474 ~~~~~~~~~Lr~L~l~~~~~~~~~~~----l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~-------i~~L~~L~ 542 (854)
+..+..+++|++|.+.+|. +... ++..+..+++|++|+|++|.... + ...+|.. +.++++|+
T Consensus 25 ~~~l~~~~~L~~L~L~~n~---i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~-l---~~~~~~~~~~l~~~l~~~~~L~ 97 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNT---IGTEAARWLSENIASKKDLEIAEFSDIFTGR-V---KDEIPEALRLLLQALLKCPKLH 97 (386)
T ss_dssp SHHHHHCSCCCEEECTTSE---ECHHHHHHHHHTTTTCTTCCEEECCSCCTTS-C---GGGSHHHHHHHHHHHTTCTTCC
T ss_pred HHHHhcCCCccEEECCCCC---CCHHHHHHHHHHHHhCCCccEEeCcccccCc-c---ccchhHHHHHHHHHHhhCCccc
Confidence 3444555666666666665 2222 22235566666666666654100 0 0122322 25566666
Q ss_pred eeeecCCCCcc-----cchhhhcCCCCcEEeecCcc
Q 003037 543 FLKLVWLDIEE-----LPETCCELFNVQTLEVLDCR 573 (854)
Q Consensus 543 ~L~L~~~~i~~-----lP~~i~~L~~L~~L~l~~~~ 573 (854)
+|+|++|.+.. +|..+.++++|++|++++|.
T Consensus 98 ~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 98 TVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp EEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred EEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 66666666554 55566666666666666665
No 97
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.47 E-value=4.9e-12 Score=138.74 Aligned_cols=296 Identities=11% Similarity=0.043 Sum_probs=178.0
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccc----cc--cCeeEEEEeCCcc-CH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVI----NH--FEKRIWVCVSDPF-DE 168 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~--f~~~~wv~~s~~~-~~ 168 (854)
+..++||+++++++..++..... ....+.+.|+|++|+||||||+.+++..... .. ....+|+++.... +.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 96 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTP 96 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCH
Confidence 47899999999999988865322 2345689999999999999999999842111 01 2356788877766 88
Q ss_pred HHHHHHHHHHhcCCCC--CCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhh-HHHHHHhhcCCCCCcEEEEecccHHH
Q 003037 169 FRIAKAIIEALEGSTP--SLGELNSLLERIYASIARKKFLLVLDDVWTEDYNK-WETFQRCLKNGLRGSKILVTTRKMTV 245 (854)
Q Consensus 169 ~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~-~~~l~~~l~~~~~gs~ilvTtR~~~v 245 (854)
..++..++..+..... .......+...+.+.+..++.+|||||++.-.... .+.+...+.....+.+||+||+....
T Consensus 97 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~ 176 (384)
T 2qby_B 97 QAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINV 176 (384)
T ss_dssp HHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTT
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCch
Confidence 8899999988843321 22334566777778887776699999995421111 22202223222267789999886532
Q ss_pred H----hhc--cCcceEecCCCCHHHHHHHHHHHhcC--CCCCCCchHHHHHHHHHHhhcC---CCcH-HHHHHHhh--hc
Q 003037 246 A----QMM--QSNDVILIRELSEQACWSLFEQLAFF--GRPRSECEQLIEIGRKIVGKCK---GLPL-AAKTIGSL--LR 311 (854)
Q Consensus 246 ~----~~~--~~~~~~~l~~L~~~e~~~l~~~~~~~--~~~~~~~~~~~~~~~~I~~~~~---GlPL-ai~~~~~~--l~ 311 (854)
. ..+ .-...+.+++++.++..+++...+.. ....... +..+.|++.++ |.|. |+..+... +.
T Consensus 177 ~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 177 RDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD----EILSYIAAISAKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp TTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS----HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred HhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH----HHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 1 111 11238999999999999999987531 1111122 33455666776 8887 43333222 22
Q ss_pred c---CCCHHHHHHHHhhhcCCccccccCccchhhcccCCChHHHHHHHhhhhcCCCCceechHHHHHHHHHhCcccCCCC
Q 003037 312 F---KRSSREWQSILDSEIGQLEEFERGLLPPLLLSYNDMPSVIKWSFSYCAIFPKDYNIEKDELIKLWLAQGYIRPKEN 388 (854)
Q Consensus 312 ~---~~~~~~w~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~Wia~g~i~~~~~ 388 (854)
. .-+.+.+..+++.... ..+.-++..|+++.+..+..++....+..+. +.....--..| +.
T Consensus 253 ~~~~~i~~~~v~~~~~~~~~----------~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~---- 316 (384)
T 2qby_B 253 SGGGIIRKEHVDKAIVDYEQ----------ERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QK---- 316 (384)
T ss_dssp TSSSCCCHHHHHHHHHHHHH----------HHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CC----
T ss_pred cCCCccCHHHHHHHHHHHhc----------chHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CC----
Confidence 1 2256677666654311 2345566788888887776666511101111 11111111122 11
Q ss_pred chHHHHHHHHHHHHHhccccccccc
Q 003037 389 KELEMIVEEYFDYLAARSFFQEFER 413 (854)
Q Consensus 389 ~~~e~~~~~~l~~L~~~sli~~~~~ 413 (854)
........++++.|...|++.....
T Consensus 317 ~~~~~~~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 317 PLSYRRFSDIISELDMFGIVKIRII 341 (384)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCHHHHHHHHHHHHhCCCEEEEec
Confidence 1122446678999999999987543
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.46 E-value=5.2e-15 Score=162.62 Aligned_cols=233 Identities=17% Similarity=0.127 Sum_probs=160.8
Q ss_pred cCceEEEEeeeCCCC------CCcccccCCCceEEEEecCCCCcccCchhhh-------hcCCCcccEEEecCCCCcccc
Q 003037 458 VEKVRHSMLKLGYDS------FPDSIFSAKKLRSFLIHSTNKDLISPVLPVL-------FDQLTCLRTLKITGISGEKRY 524 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~------~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~-------~~~l~~Lr~L~L~~~~~~~~~ 524 (854)
..+++++.+.++... +...+..+++|++|.+.++....+.+.+|.. +..+++|++|+|++|.
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~----- 105 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA----- 105 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-----
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc-----
Confidence 456889998887654 1233668899999999998644344334444 4789999999999998
Q ss_pred cccccc-----ccccccccCCCceeeecCCCCc-----ccchhhhcC---------CCCcEEeecCccccc--ccc---c
Q 003037 525 FRIIVE-----IPKEIKKLIHLRFLKLVWLDIE-----ELPETCCEL---------FNVQTLEVLDCRSFR--RLP---Q 580 (854)
Q Consensus 525 ~~~i~~-----lP~~i~~L~~L~~L~L~~~~i~-----~lP~~i~~L---------~~L~~L~l~~~~~l~--~lp---~ 580 (854)
+.. +|..+.++++|++|+|++|.+. .++..+..+ ++|++|++++|. +. .+| .
T Consensus 106 ---l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~ 181 (386)
T 2ca6_A 106 ---FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAK 181 (386)
T ss_dssp ---CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHH
T ss_pred ---CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHHHH
Confidence 554 7888999999999999999986 344455555 899999999998 53 444 4
Q ss_pred ccccCCCCcccCceeecCCCCCCcccccccccCCceeEEecccCCC--ChhHHHHhhccCCCCCCcEEEEecCCCCCCCc
Q 003037 581 GFGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLGNVR--DADEAKSAELEKKKNLLDLVLSFDGGQRIGDV 658 (854)
Q Consensus 581 ~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~--~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 658 (854)
.+..+++|++|.. .+. .+. .........+..+++|+.|++++|.. ...
T Consensus 182 ~l~~~~~L~~L~L--------------------------~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l---~~~ 231 (386)
T 2ca6_A 182 TFQSHRLLHTVKM--------------------------VQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTF---THL 231 (386)
T ss_dssp HHHHCTTCCEEEC--------------------------CSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCC---HHH
T ss_pred HHHhCCCcCEEEC--------------------------cCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCC---CcH
Confidence 5566677776621 110 001 00112222677888999999988710 000
Q ss_pred chHHHhhhCCCCCCCCeEEEeccCCCCCC----CCchhhc--ccCccEEEEecccCCC----CCCC-C-CCCCCCCEEEE
Q 003037 659 NDKAIIEALQPPPNIESLRIEYHYIGISG----WPSWIVS--LNKLKKLVLYQFYLCD----TMPP-L-GKLPSLEILEI 726 (854)
Q Consensus 659 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~----lp~~~~~--l~~L~~L~L~~~~~~~----~l~~-l-~~L~~L~~L~L 726 (854)
....++..+..+++|+.|+| +++..... +|.++.. +++|+.|+|++|.+.. .+|. + ..+++|++|+|
T Consensus 232 g~~~l~~~l~~~~~L~~L~L-~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 232 GSSALAIALKSWPNLRELGL-NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp HHHHHHHHGGGCTTCCEEEC-TTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHHHccCCCcCEEEC-CCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence 11456677788889999999 66554331 3455533 8899999999998766 3554 4 56899999999
Q ss_pred cCCC
Q 003037 727 RGNW 730 (854)
Q Consensus 727 ~~~~ 730 (854)
++|.
T Consensus 311 ~~N~ 314 (386)
T 2ca6_A 311 NGNR 314 (386)
T ss_dssp TTSB
T ss_pred cCCc
Confidence 9887
No 99
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.46 E-value=9.7e-14 Score=147.40 Aligned_cols=202 Identities=17% Similarity=0.151 Sum_probs=126.4
Q ss_pred cCCCceEEEEecCCCCcccCchhhhh--cCCCcccEEEecCCCCcccccccccc-cc----ccccccCCCceeeecCCCC
Q 003037 479 SAKKLRSFLIHSTNKDLISPVLPVLF--DQLTCLRTLKITGISGEKRYFRIIVE-IP----KEIKKLIHLRFLKLVWLDI 551 (854)
Q Consensus 479 ~~~~Lr~L~l~~~~~~~~~~~l~~~~--~~l~~Lr~L~L~~~~~~~~~~~~i~~-lP----~~i~~L~~L~~L~L~~~~i 551 (854)
.+++|++|.+.+|. +.+..|..+ ..+++|++|+|++|. +.. .| ..+..+++|++|+|++|.+
T Consensus 89 ~~~~L~~L~l~~n~---l~~~~~~~~~~~~~~~L~~L~Ls~n~--------i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 157 (310)
T 4glp_A 89 AYSRLKELTLEDLK---ITGTMPPLPLEATGLALSSLRLRNVS--------WATGRSWLAELQQWLKPGLKVLSIAQAHS 157 (310)
T ss_dssp HHSCCCEEEEESCC---CBSCCCCCSSSCCCBCCSSCEEESCC--------CSSTTSSHHHHHTTBCSCCCEEEEECCSS
T ss_pred ccCceeEEEeeCCE---eccchhhhhhhccCCCCCEEEeeccc--------ccchhhhhHHHHhhhccCCCEEEeeCCCc
Confidence 34557777777776 444445545 667777777777776 433 11 2334577777777777777
Q ss_pred cccc-hhhhcCCCCcEEeecCcccccc--cccc--cccCCCCcccCceeecCCCCCCcccccccccCCceeEEecccCCC
Q 003037 552 EELP-ETCCELFNVQTLEVLDCRSFRR--LPQG--FGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLGNVR 626 (854)
Q Consensus 552 ~~lP-~~i~~L~~L~~L~l~~~~~l~~--lp~~--i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~ 626 (854)
..+| ..++++++|++|++++|..... +|.. ++.+++|++|.. .+. .+.
T Consensus 158 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L--------------------------s~N-~l~ 210 (310)
T 4glp_A 158 PAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLAL--------------------------RNT-GME 210 (310)
T ss_dssp CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBC--------------------------CSS-CCC
T ss_pred chhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEEC--------------------------CCC-CCC
Confidence 6555 4566777777777777762211 3222 245566665521 110 112
Q ss_pred ChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCC---CCCCCCeEEEeccCCCCCCCCchhhcccCccEEEE
Q 003037 627 DADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQ---PPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVL 703 (854)
Q Consensus 627 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~---~~~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L 703 (854)
.........+..+++|+.|++++|... ...++.+. .+++|+.|++ +++.... +|.++. ++|+.|+|
T Consensus 211 ~l~~~~~~l~~~l~~L~~L~Ls~N~l~-------~~~p~~~~~~~~~~~L~~L~L-s~N~l~~-lp~~~~--~~L~~L~L 279 (310)
T 4glp_A 211 TPTGVCAALAAAGVQPHSLDLSHNSLR-------ATVNPSAPRCMWSSALNSLNL-SFAGLEQ-VPKGLP--AKLRVLDL 279 (310)
T ss_dssp CHHHHHHHHHHHTCCCSSEECTTSCCC-------CCCCSCCSSCCCCTTCCCEEC-CSSCCCS-CCSCCC--SCCSCEEC
T ss_pred chHHHHHHHHhcCCCCCEEECCCCCCC-------ccchhhHHhccCcCcCCEEEC-CCCCCCc-hhhhhc--CCCCEEEC
Confidence 222222223467889999999988211 11122333 3479999999 6665555 888764 89999999
Q ss_pred ecccCCCCCCCCCCCCCCCEEEEcCCC
Q 003037 704 YQFYLCDTMPPLGKLPSLEILEIRGNW 730 (854)
Q Consensus 704 ~~~~~~~~l~~l~~L~~L~~L~L~~~~ 730 (854)
++|.+.. +|.+..+++|+.|+|++|+
T Consensus 280 s~N~l~~-~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 280 SSNRLNR-APQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CSCCCCS-CCCTTSCCCCSCEECSSTT
T ss_pred CCCcCCC-CchhhhCCCccEEECcCCC
Confidence 9998764 4667889999999999987
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.46 E-value=1.8e-13 Score=145.24 Aligned_cols=102 Identities=11% Similarity=0.052 Sum_probs=64.4
Q ss_pred CCCceEEEEecCCCCc--ccCchhhhhcCCCcccEEEecCCCCccccccccccccccc--cccCCCceeeecCCCCccc-
Q 003037 480 AKKLRSFLIHSTNKDL--ISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEI--KKLIHLRFLKLVWLDIEEL- 554 (854)
Q Consensus 480 ~~~Lr~L~l~~~~~~~--~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i--~~L~~L~~L~L~~~~i~~l- 554 (854)
...++.|.+..+.... +.. +.. +..+++|++|++++|.. ....|..+ +++.+|++|+|++|.+...
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~-~~~-~~~~~~L~~L~l~~n~l-------~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~ 133 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVG-ALR-VLAYSRLKELTLEDLKI-------TGTMPPLPLEATGLALSSLRLRNVSWATGR 133 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHH-HHH-HHHHSCCCEEEEESCCC-------BSCCCCCSSSCCCBCCSSCEEESCCCSSTT
T ss_pred hcceeEEEEeCCcCCHHHHHH-HHH-hcccCceeEEEeeCCEe-------ccchhhhhhhccCCCCCEEEeecccccchh
Confidence 3456777777665211 001 111 22356689999998882 33566666 8888999999999887742
Q ss_pred c----hhhhcCCCCcEEeecCcccccccc-cccccCCCCccc
Q 003037 555 P----ETCCELFNVQTLEVLDCRSFRRLP-QGFGKLVNLRNL 591 (854)
Q Consensus 555 P----~~i~~L~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L 591 (854)
| ..+..+++|++|++++|. +..+| ..++.+++|++|
T Consensus 134 ~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L 174 (310)
T 4glp_A 134 SWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFPALTSL 174 (310)
T ss_dssp SSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCCTTCCEE
T ss_pred hhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhccCCCCCEE
Confidence 2 244578888999998887 55554 345555555554
No 101
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.43 E-value=4.4e-14 Score=152.07 Aligned_cols=223 Identities=17% Similarity=0.146 Sum_probs=152.8
Q ss_pred eEEEEeeeCCCCCCcccccC--CCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccc--cccccc
Q 003037 461 VRHSMLKLGYDSFPDSIFSA--KKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVE--IPKEIK 536 (854)
Q Consensus 461 ~r~l~l~~~~~~~~~~~~~~--~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~--lP~~i~ 536 (854)
++++.+..+... +..+..+ ++++.|.+.++. +.+..+. +.++++|++|++++|. +.. +|..+.
T Consensus 49 ~~~l~l~~~~~~-~~~~~~~~~~~l~~L~l~~n~---l~~~~~~-~~~~~~L~~L~L~~~~--------l~~~~~~~~~~ 115 (336)
T 2ast_B 49 WQTLDLTGKNLH-PDVTGRLLSQGVIAFRCPRSF---MDQPLAE-HFSPFRVQHMDLSNSV--------IEVSTLHGILS 115 (336)
T ss_dssp SSEEECTTCBCC-HHHHHHHHHTTCSEEECTTCE---ECSCCCS-CCCCBCCCEEECTTCE--------ECHHHHHHHHT
T ss_pred heeeccccccCC-HHHHHhhhhccceEEEcCCcc---ccccchh-hccCCCCCEEEccCCC--------cCHHHHHHHHh
Confidence 445555544433 3444555 788999988876 4443343 5678999999999987 543 788888
Q ss_pred ccCCCceeeecCCCCc-ccchhhhcCCCCcEEeecCccccc--ccccccccCCCCcccCceeecCCCCCCcccccccccC
Q 003037 537 KLIHLRFLKLVWLDIE-ELPETCCELFNVQTLEVLDCRSFR--RLPQGFGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHL 613 (854)
Q Consensus 537 ~L~~L~~L~L~~~~i~-~lP~~i~~L~~L~~L~l~~~~~l~--~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L 613 (854)
++++|++|+|++|.++ ..|..++++++|++|++++|..+. .+|..+..+++|++|..
T Consensus 116 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l-------------------- 175 (336)
T 2ast_B 116 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL-------------------- 175 (336)
T ss_dssp TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEEC--------------------
T ss_pred hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcC--------------------
Confidence 9999999999999887 677888899999999999985455 36766777777777721
Q ss_pred CceeEEecccCCCChhHHHHhhccCCC-CCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCC-CCCCCCch
Q 003037 614 RGSLKIQGLGNVRDADEAKSAELEKKK-NLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYI-GISGWPSW 691 (854)
Q Consensus 614 ~~~L~i~~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~~lp~~ 691 (854)
.+...+. .......+..++ +|+.|+++++.. ......++..+..+++|+.|++ .++. .....+..
T Consensus 176 ------~~~~~l~--~~~~~~~~~~l~~~L~~L~l~~~~~----~~~~~~l~~~~~~~~~L~~L~l-~~~~~l~~~~~~~ 242 (336)
T 2ast_B 176 ------SWCFDFT--EKHVQVAVAHVSETITQLNLSGYRK----NLQKSDLSTLVRRCPNLVHLDL-SDSVMLKNDCFQE 242 (336)
T ss_dssp ------CCCTTCC--HHHHHHHHHHSCTTCCEEECCSCGG----GSCHHHHHHHHHHCTTCSEEEC-TTCTTCCGGGGGG
T ss_pred ------CCCCCcC--hHHHHHHHHhcccCCCEEEeCCCcc----cCCHHHHHHHHhhCCCCCEEeC-CCCCcCCHHHHHH
Confidence 1110111 112344566777 888999887610 0112444555566789999999 5555 33235667
Q ss_pred hhcccCccEEEEecccCCC--CCCCCCCCCCCCEEEEcCC
Q 003037 692 IVSLNKLKKLVLYQFYLCD--TMPPLGKLPSLEILEIRGN 729 (854)
Q Consensus 692 ~~~l~~L~~L~L~~~~~~~--~l~~l~~L~~L~~L~L~~~ 729 (854)
+..+++|+.|+|++|.... .+..++.+++|+.|+|++|
T Consensus 243 l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 243 FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred HhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 7888999999999986322 2234778999999999987
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.41 E-value=1.5e-13 Score=144.13 Aligned_cols=98 Identities=16% Similarity=0.257 Sum_probs=65.8
Q ss_pred cccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccccCCCceeeecCCCCcccch
Q 003037 477 IFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIEELPE 556 (854)
Q Consensus 477 ~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~~lP~ 556 (854)
...+++|++|.+.++. +.. ++. +..+++|++|++++|. +..+|. +.++.+|++|++++|.++.+|.
T Consensus 42 ~~~l~~L~~L~l~~~~---i~~-~~~-~~~l~~L~~L~L~~n~--------l~~~~~-l~~l~~L~~L~l~~n~l~~~~~ 107 (291)
T 1h6t_A 42 QNELNSIDQIIANNSD---IKS-VQG-IQYLPNVTKLFLNGNK--------LTDIKP-LANLKNLGWLFLDENKVKDLSS 107 (291)
T ss_dssp HHHHHTCCEEECTTSC---CCC-CTT-GGGCTTCCEEECCSSC--------CCCCGG-GTTCTTCCEEECCSSCCCCGGG
T ss_pred hhhcCcccEEEccCCC---ccc-Chh-HhcCCCCCEEEccCCc--------cCCCcc-cccCCCCCEEECCCCcCCCChh
Confidence 4456777777777776 333 232 6677777777777777 666665 7777777777777777777654
Q ss_pred hhhcCCCCcEEeecCcccccccccccccCCCCccc
Q 003037 557 TCCELFNVQTLEVLDCRSFRRLPQGFGKLVNLRNL 591 (854)
Q Consensus 557 ~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L 591 (854)
+.++++|++|++++|. +..+| .+..+++|++|
T Consensus 108 -l~~l~~L~~L~L~~n~-i~~~~-~l~~l~~L~~L 139 (291)
T 1h6t_A 108 -LKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESL 139 (291)
T ss_dssp -GTTCTTCCEEECTTSC-CCCCG-GGGGCTTCCEE
T ss_pred -hccCCCCCEEECCCCc-CCCCh-hhcCCCCCCEE
Confidence 7777777777777776 55553 35555555554
No 103
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.41 E-value=6e-14 Score=152.56 Aligned_cols=70 Identities=11% Similarity=0.036 Sum_probs=40.9
Q ss_pred ccCchhhhhcCCCcccEEEecCCCCcccccccccccc-----ccccccC-CCceeeecCCCCccc-chhhhcC-----CC
Q 003037 496 ISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIP-----KEIKKLI-HLRFLKLVWLDIEEL-PETCCEL-----FN 563 (854)
Q Consensus 496 ~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP-----~~i~~L~-~L~~L~L~~~~i~~l-P~~i~~L-----~~ 563 (854)
+.+.+|..+...++|++|+|++|. +...+ ..+.+++ +|++|+|++|.+... |..+..+ ++
T Consensus 10 ~~~~~~~~~~~~~~L~~L~Ls~n~--------l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 10 GSNPVEEFTSIPHGVTSLDLSLNN--------LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp TCCHHHHHHTSCTTCCEEECTTSC--------GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred chHHHHHHHhCCCCceEEEccCCC--------CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 444455555555556666666666 55443 4455565 666666666666543 3344443 66
Q ss_pred CcEEeecCcc
Q 003037 564 VQTLEVLDCR 573 (854)
Q Consensus 564 L~~L~l~~~~ 573 (854)
|++|++++|.
T Consensus 82 L~~L~Ls~n~ 91 (362)
T 3goz_A 82 VTSLNLSGNF 91 (362)
T ss_dssp CCEEECCSSC
T ss_pred ccEEECcCCc
Confidence 6666666666
No 104
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.40 E-value=1.4e-11 Score=135.27 Aligned_cols=296 Identities=12% Similarity=0.127 Sum_probs=174.9
Q ss_pred cCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhcccccccc---CeeEEEEeCCccCHHHH
Q 003037 95 DVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHF---EKRIWVCVSDPFDEFRI 171 (854)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~s~~~~~~~~ 171 (854)
.+..|+||+++++.+.+++..... ....+.+.|+|++|+||||||+.+++. ....+ ..++|+++....+...+
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~ 93 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRV 93 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHH
Confidence 347899999999999999875322 234568899999999999999999984 32222 25678877666677788
Q ss_pred HHHHHHHhcCCCC-CCccHHHHHHHHHHHhc--CCeEEEEEecCCCc----ChhhHHHHHHhhcC-CCCCcEEEEecccH
Q 003037 172 AKAIIEALEGSTP-SLGELNSLLERIYASIA--RKKFLLVLDDVWTE----DYNKWETFQRCLKN-GLRGSKILVTTRKM 243 (854)
Q Consensus 172 ~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~----~~~~~~~l~~~l~~-~~~gs~ilvTtR~~ 243 (854)
+..++..++.... ...+.......+.+.+. +++.+||||+++.- +...+..+...+.. ...+..+|+||+..
T Consensus 94 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 94 LADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV 173 (386)
T ss_dssp HHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCC
Confidence 8888877755432 22335555666666664 45899999999541 12344445544432 23455678888765
Q ss_pred HHHhhcc-----C--cceEecCCCCHHHHHHHHHHHhcCC-CCCCCchHHHHHHHHHHhhcC---CCcHHHHHHHh-hh-
Q 003037 244 TVAQMMQ-----S--NDVILIRELSEQACWSLFEQLAFFG-RPRSECEQLIEIGRKIVGKCK---GLPLAAKTIGS-LL- 310 (854)
Q Consensus 244 ~v~~~~~-----~--~~~~~l~~L~~~e~~~l~~~~~~~~-~~~~~~~~~~~~~~~I~~~~~---GlPLai~~~~~-~l- 310 (854)
.....+. . ...+.+++++.++..+++...+... ...... .++.+.|++.++ |.|..+..+.. ..
T Consensus 174 ~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~ 250 (386)
T 2qby_A 174 KFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGE 250 (386)
T ss_dssp GGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4322211 1 1489999999999999998764211 111112 344556666776 99984433322 21
Q ss_pred -c---c--CCCHHHHHHHHhhhcCCccccccCccchhhcccCCChHHHHHHHhhhhcCCC-C-ceechHHHHHHH--HH-
Q 003037 311 -R---F--KRSSREWQSILDSEIGQLEEFERGLLPPLLLSYNDMPSVIKWSFSYCAIFPK-D-YNIEKDELIKLW--LA- 379 (854)
Q Consensus 311 -~---~--~~~~~~w~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~k~cf~~~s~fp~-~-~~i~~~~li~~W--ia- 379 (854)
. . .-+.+.+..+++... ...+.-.+..+|.+.+..+..++.+.+ + ..+....+.+.. ++
T Consensus 251 ~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~ 320 (386)
T 2qby_A 251 IAERMKDTKVKEEYVYMAKEEIE----------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICK 320 (386)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHH----------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHH
T ss_pred HHHhcCCCccCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHH
Confidence 1 1 124555555544321 123445566788877776666653211 1 123333332221 11
Q ss_pred -hCcccCCCCchHHHHHHHHHHHHHhcccccccc
Q 003037 380 -QGYIRPKENKELEMIVEEYFDYLAARSFFQEFE 412 (854)
Q Consensus 380 -~g~i~~~~~~~~e~~~~~~l~~L~~~sli~~~~ 412 (854)
-| +.+ ........+++.|...|+|....
T Consensus 321 ~~g-~~~----~~~~~~~~~l~~L~~~gli~~~~ 349 (386)
T 2qby_A 321 KLG-VEA----VTQRRVSDIINELDMVGILTAKV 349 (386)
T ss_dssp HHT-CCC----CCHHHHHHHHHHHHHHTSEEEEE
T ss_pred hcC-CCC----CCHHHHHHHHHHHHhCCCEEEEe
Confidence 12 111 11234567899999999997653
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.39 E-value=2.3e-13 Score=156.75 Aligned_cols=98 Identities=17% Similarity=0.263 Sum_probs=65.9
Q ss_pred cccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccccCCCceeeecCCCCcccch
Q 003037 477 IFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIEELPE 556 (854)
Q Consensus 477 ~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~~lP~ 556 (854)
+..+.+|+.|.+.++. +.. ++ .+..|++|+.|+|++|. +..+|. +..|.+|++|+|++|.+..+|
T Consensus 39 ~~~L~~L~~L~l~~n~---i~~-l~-~l~~l~~L~~L~Ls~N~--------l~~~~~-l~~l~~L~~L~Ls~N~l~~l~- 103 (605)
T 1m9s_A 39 QNELNSIDQIIANNSD---IKS-VQ-GIQYLPNVTKLFLNGNK--------LTDIKP-LTNLKNLGWLFLDENKIKDLS- 103 (605)
T ss_dssp HHHHTTCCCCBCTTCC---CCC-CT-TGGGCTTCCEEECTTSC--------CCCCGG-GGGCTTCCEEECCSSCCCCCT-
T ss_pred hhcCCCCCEEECcCCC---CCC-Ch-HHccCCCCCEEEeeCCC--------CCCChh-hccCCCCCEEECcCCCCCCCh-
Confidence 4566777777777766 333 23 26677777777777777 666665 777777777777777777766
Q ss_pred hhhcCCCCcEEeecCcccccccccccccCCCCccc
Q 003037 557 TCCELFNVQTLEVLDCRSFRRLPQGFGKLVNLRNL 591 (854)
Q Consensus 557 ~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L 591 (854)
.+..+++|++|+|++|. +..+| .+..|++|+.|
T Consensus 104 ~l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L 136 (605)
T 1m9s_A 104 SLKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESL 136 (605)
T ss_dssp TSTTCTTCCEEECTTSC-CCCCG-GGGGCTTCSEE
T ss_pred hhccCCCCCEEEecCCC-CCCCc-cccCCCccCEE
Confidence 57777777777777776 55554 35556666555
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.38 E-value=6.4e-13 Score=139.40 Aligned_cols=170 Identities=20% Similarity=0.233 Sum_probs=111.1
Q ss_pred hcCCCcccEEEecCCCCccccccccccccccccccCCCceeeecCCCCcccchhhhcCCCCcEEeecCcccccccccccc
Q 003037 504 FDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIEELPETCCELFNVQTLEVLDCRSFRRLPQGFG 583 (854)
Q Consensus 504 ~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~ 583 (854)
+..+++|+.|++++|. +..+|. ++.+.+|++|++++|.++.+|. +.++++|++|++++|. +..+|. ++
T Consensus 42 ~~~l~~L~~L~l~~~~--------i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~ 109 (291)
T 1h6t_A 42 QNELNSIDQIIANNSD--------IKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LK 109 (291)
T ss_dssp HHHHHTCCEEECTTSC--------CCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GT
T ss_pred hhhcCcccEEEccCCC--------cccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChh-hc
Confidence 3467778888888877 677753 7778888888888888887776 7788888888888877 666654 66
Q ss_pred cCCCCcccCceeecCCCCCCcccccccccCCceeEEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHH
Q 003037 584 KLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAI 663 (854)
Q Consensus 584 ~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 663 (854)
.+++|++|.. ..+. +. .. ..+..+++|+.|+++.|.. ..+
T Consensus 110 ~l~~L~~L~L---~~n~---i~---------------------~~-----~~l~~l~~L~~L~l~~n~l--------~~~ 149 (291)
T 1h6t_A 110 DLKKLKSLSL---EHNG---IS---------------------DI-----NGLVHLPQLESLYLGNNKI--------TDI 149 (291)
T ss_dssp TCTTCCEEEC---TTSC---CC---------------------CC-----GGGGGCTTCCEEECCSSCC--------CCC
T ss_pred cCCCCCEEEC---CCCc---CC---------------------CC-----hhhcCCCCCCEEEccCCcC--------Ccc
Confidence 6666666621 1110 00 00 1234556677777766611 111
Q ss_pred hhhCCCCCCCCeEEEeccCCCCCCCCchhhcccCccEEEEecccCCCCCCCCCCCCCCCEEEEcCCC
Q 003037 664 IEALQPPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCDTMPPLGKLPSLEILEIRGNW 730 (854)
Q Consensus 664 ~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~ 730 (854)
+.+..+++|+.|++ +++.... ++. +..+++|+.|+|++|.+.. ++.+..+++|+.|++++|.
T Consensus 150 -~~l~~l~~L~~L~L-~~N~l~~-~~~-l~~l~~L~~L~L~~N~i~~-l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 150 -TVLSRLTKLDTLSL-EDNQISD-IVP-LAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp -GGGGGCTTCSEEEC-CSSCCCC-CGG-GTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEEEEEEE
T ss_pred -hhhccCCCCCEEEc-cCCcccc-chh-hcCCCccCEEECCCCcCCC-ChhhccCCCCCEEECcCCc
Confidence 34555677788877 5554444 444 6677888888888876543 4567778888888888775
No 107
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.37 E-value=1.1e-11 Score=126.44 Aligned_cols=198 Identities=12% Similarity=0.104 Sum_probs=120.8
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAI 175 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 175 (854)
...++||+++++.+..++.... ..+.+.|+|++|+||||||+.+++.......+.. ..... ... ...+
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~---~~~~~---~~~-~~~~ 89 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGV---CDN-CREI 89 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS---SCCSC---SHH-HHHH
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC---CCCcc---cHH-HHHH
Confidence 3569999999999999987432 2357899999999999999999874221111100 00000 000 0000
Q ss_pred HHHh-----cCCCCCCccHHHHHHHHHHH-----hcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccHHH
Q 003037 176 IEAL-----EGSTPSLGELNSLLERIYAS-----IARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKMTV 245 (854)
Q Consensus 176 ~~~l-----~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v 245 (854)
.... ..........+.+. .+.+. ..+++.+||+||++.-+...+..+...+.....+.++|+||+....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 90 EQGRFVDLIEIDAASRTKVEDTR-DLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 168 (250)
T ss_dssp HTTCCSSEEEEETTCGGGHHHHH-HHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred hccCCcceEEecCcccccHHHHH-HHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 0000 00000001111111 11121 1356899999999765566788888888776677888988876432
Q ss_pred H-h-hccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHHHhhh
Q 003037 246 A-Q-MMQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTIGSLL 310 (854)
Q Consensus 246 ~-~-~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~l 310 (854)
. . .......+.+++++.++..+++...+........ .+..+.|++.|+|+|..+..+...+
T Consensus 169 ~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 169 LPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE----PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBC----HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 1 1222468999999999999999887643221111 3456779999999999988776443
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.35 E-value=7.2e-13 Score=152.65 Aligned_cols=75 Identities=17% Similarity=0.220 Sum_probs=39.8
Q ss_pred cCCCcccEEEecCCCCccccccccccccccccccCCCceeeecCCCCcccchhhhcCCCCcEEeecCccccccccccccc
Q 003037 505 DQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIEELPETCCELFNVQTLEVLDCRSFRRLPQGFGK 584 (854)
Q Consensus 505 ~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~ 584 (854)
..+.+|+.|++++|. +..+| .++.|.+|++|+|++|.+..+|+ +.++++|+.|+|++|. +..+| .+..
T Consensus 40 ~~L~~L~~L~l~~n~--------i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~ 107 (605)
T 1m9s_A 40 NELNSIDQIIANNSD--------IKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKD 107 (605)
T ss_dssp HHHTTCCCCBCTTCC--------CCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTT
T ss_pred hcCCCCCEEECcCCC--------CCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCCh-hhcc
Confidence 345555555555555 44544 35555555555555555555554 5555555555555554 44444 3444
Q ss_pred CCCCccc
Q 003037 585 LVNLRNL 591 (854)
Q Consensus 585 L~~L~~L 591 (854)
|++|++|
T Consensus 108 l~~L~~L 114 (605)
T 1m9s_A 108 LKKLKSL 114 (605)
T ss_dssp CTTCCEE
T ss_pred CCCCCEE
Confidence 4444444
No 109
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.35 E-value=6.9e-14 Score=163.28 Aligned_cols=305 Identities=15% Similarity=0.116 Sum_probs=146.4
Q ss_pred cCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccccCCCceeeecCC---------
Q 003037 479 SAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWL--------- 549 (854)
Q Consensus 479 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~--------- 549 (854)
.+++|++|.+.++........++..+.++++|++|++++|.. +..+|..+.++++|++|+++.+
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~-------~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 254 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP-------LEKLATLLQRAPQLEELGTGGYTAEVRPDVY 254 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC-------HHHHHHHHHHCTTCSEEECSBCCCCCCHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc-------HHHHHHHHhcCCcceEcccccccCccchhhH
Confidence 455666666665541100011333334566666666666632 4445555555555555554332
Q ss_pred ----------------------CCcccchhhhcCCCCcEEeecCcccccc--cccccccCCCCcccCceeecCCCCCCcc
Q 003037 550 ----------------------DIEELPETCCELFNVQTLEVLDCRSFRR--LPQGFGKLVNLRNLSKFIVSRSGGSKLE 605 (854)
Q Consensus 550 ----------------------~i~~lP~~i~~L~~L~~L~l~~~~~l~~--lp~~i~~L~~L~~L~~~~~~~~~~~~l~ 605 (854)
....+|..+..+++|++|++++|. +.. ++.-+..+++|++|..... .....+.
T Consensus 255 ~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~ 331 (594)
T 2p1m_B 255 SGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLE 331 (594)
T ss_dssp HHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHH
T ss_pred HHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHH
Confidence 222344444456667777777666 332 2222445666666633211 0000011
Q ss_pred cc-cccccCCceeEEecc-----cCCCChhHH-HHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCC-CCCCCCeEE
Q 003037 606 DL-RQLKHLRGSLKIQGL-----GNVRDADEA-KSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQ-PPPNIESLR 677 (854)
Q Consensus 606 ~L-~~L~~L~~~L~i~~l-----~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~ 677 (854)
.+ ..+++|+ .|.+... ......... .......+++|+.|.+..+. .....+..+. .+++|+.|+
T Consensus 332 ~l~~~~~~L~-~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~-------l~~~~~~~l~~~~~~L~~L~ 403 (594)
T 2p1m_B 332 VLASTCKDLR-ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQ-------MTNAALITIARNRPNMTRFR 403 (594)
T ss_dssp HHHHHCTTCC-EEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESC-------CCHHHHHHHHHHCTTCCEEE
T ss_pred HHHHhCCCCC-EEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCC-------cCHHHHHHHHhhCCCcceeE
Confidence 11 1233344 5555331 011111111 12222346777777665541 1222223332 357788888
Q ss_pred Ee--c--cCCCCCCCC------chhhcccCccEEEEecccCCC-CCCCCCC-CCCCCEEEEcCCCCceEeCccccCCCCC
Q 003037 678 IE--Y--HYIGISGWP------SWIVSLNKLKKLVLYQFYLCD-TMPPLGK-LPSLEILEIRGNWNVKRVGDEFLGVGGG 745 (854)
Q Consensus 678 l~--~--~~~~~~~lp------~~~~~l~~L~~L~L~~~~~~~-~l~~l~~-L~~L~~L~L~~~~~l~~i~~~~~~~~~~ 745 (854)
++ . ++......| ..+..+++|+.|+|+++ ... .++.++. +++|+.|+|++|. +...+...+
T Consensus 404 L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~-l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l----- 476 (594)
T 2p1m_B 404 LCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL-LTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHV----- 476 (594)
T ss_dssp EEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHH-----
T ss_pred eecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCc-ccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHH-----
Confidence 83 1 122222122 12446778888888652 222 2223333 7788888888776 211111000
Q ss_pred CCCccccCCccccCCCccceeeccccccccccccCCCccccCCCccceeeecccccCcCCCcCC-CCCCCcCEEEEec
Q 003037 746 DHLHGISTSSSVIAFPKLKQVLFYNICHWEEWDFGKGDSITIMPQLKKLEFERCTELKSVPEKL-LRSTTLEELSIVE 822 (854)
Q Consensus 746 ~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~ 822 (854)
...+++|+.|++.+|+. ...... ..+..+++|++|++++|+....-...+ ..++.|+...+.+
T Consensus 477 -----------~~~~~~L~~L~L~~n~~-~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~ 540 (594)
T 2p1m_B 477 -----------LSGCDSLRKLEIRDCPF-GDKALL--ANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDE 540 (594)
T ss_dssp -----------HHHCTTCCEEEEESCSC-CHHHHH--HTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECS
T ss_pred -----------HhcCCCcCEEECcCCCC-cHHHHH--HHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecC
Confidence 13589999999999764 222111 012358999999999996522111112 3356666555543
No 110
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.35 E-value=3.5e-12 Score=130.78 Aligned_cols=62 Identities=21% Similarity=0.223 Sum_probs=48.9
Q ss_pred CCCCCCCCeEEEeccCCCCCCCCc-hhhcccCccEEEEecccCCCCCC-CCCCCCCCCEEEEcCCC
Q 003037 667 LQPPPNIESLRIEYHYIGISGWPS-WIVSLNKLKKLVLYQFYLCDTMP-PLGKLPSLEILEIRGNW 730 (854)
Q Consensus 667 l~~~~~L~~L~l~~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~l~-~l~~L~~L~~L~L~~~~ 730 (854)
+..+++|+.|++ +++.... +|. .+..+++|+.|+|++|.+....+ .+..+++|+.|+|++|+
T Consensus 127 ~~~l~~L~~L~L-s~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 127 FDRLTKLKELRL-NTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTTCTTCCEEEC-CSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred hccCCcccEEEC-cCCcCCc-cCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 455678888888 5555444 554 67889999999999998876555 38889999999999987
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.33 E-value=2.5e-12 Score=146.42 Aligned_cols=78 Identities=22% Similarity=0.367 Sum_probs=39.9
Q ss_pred CceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccccCCCceeeecCCCCcccchhhhcC
Q 003037 482 KLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIEELPETCCEL 561 (854)
Q Consensus 482 ~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~~lP~~i~~L 561 (854)
+|++|.+.++. +.+ +|..+ +++|++|+|++|. +..+| +.+.+|++|+|++|.|+.+|. +.+
T Consensus 60 ~L~~L~Ls~n~---L~~-lp~~l--~~~L~~L~Ls~N~--------l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~- 120 (571)
T 3cvr_A 60 QFSELQLNRLN---LSS-LPDNL--PPQITVLEITQNA--------LISLP---ELPASLEYLDACDNRLSTLPE-LPA- 120 (571)
T ss_dssp TCSEEECCSSC---CSC-CCSCC--CTTCSEEECCSSC--------CSCCC---CCCTTCCEEECCSSCCSCCCC-CCT-
T ss_pred CccEEEeCCCC---CCc-cCHhH--cCCCCEEECcCCC--------Ccccc---cccCCCCEEEccCCCCCCcch-hhc-
Confidence 55555555554 333 23222 2455555555555 55555 334555555555555555555 433
Q ss_pred CCCcEEeecCccccccccc
Q 003037 562 FNVQTLEVLDCRSFRRLPQ 580 (854)
Q Consensus 562 ~~L~~L~l~~~~~l~~lp~ 580 (854)
+|++|++++|. +..+|.
T Consensus 121 -~L~~L~Ls~N~-l~~lp~ 137 (571)
T 3cvr_A 121 -SLKHLDVDNNQ-LTMLPE 137 (571)
T ss_dssp -TCCEEECCSSC-CSCCCC
T ss_pred -CCCEEECCCCc-CCCCCC
Confidence 55555555555 444554
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.32 E-value=1.3e-12 Score=148.77 Aligned_cols=106 Identities=18% Similarity=0.247 Sum_probs=82.2
Q ss_pred CceEEEEeeeCCCC-CCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccc
Q 003037 459 EKVRHSMLKLGYDS-FPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKK 537 (854)
Q Consensus 459 ~~~r~l~l~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~ 537 (854)
.+++.+.+.++... +|..+ +++|++|.+.+|. +.. +| ..+++|++|+|++|. +..+|. +++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~---l~~-ip---~~l~~L~~L~Ls~N~--------l~~ip~-l~~ 120 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQNA---LIS-LP---ELPASLEYLDACDNR--------LSTLPE-LPA 120 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSC---CSC-CC---CCCTTCCEEECCSSC--------CSCCCC-CCT
T ss_pred CCccEEEeCCCCCCccCHhH--cCCCCEEECcCCC---Ccc-cc---cccCCCCEEEccCCC--------CCCcch-hhc
Confidence 36778888877655 45444 3789999999887 554 45 457899999999998 788888 665
Q ss_pred cCCCceeeecCCCCcccchhhhcCCCCcEEeecCcccccccccccccCCCCccc
Q 003037 538 LIHLRFLKLVWLDIEELPETCCELFNVQTLEVLDCRSFRRLPQGFGKLVNLRNL 591 (854)
Q Consensus 538 L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L 591 (854)
+|++|+|++|.++.+|. .+++|++|++++|. +..+|. .+++|++|
T Consensus 121 --~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L 165 (571)
T 3cvr_A 121 --SLKHLDVDNNQLTMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVL 165 (571)
T ss_dssp --TCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEE
T ss_pred --CCCEEECCCCcCCCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEE
Confidence 89999999999998887 68899999999988 777776 34555555
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.32 E-value=3.3e-12 Score=125.58 Aligned_cols=151 Identities=17% Similarity=0.213 Sum_probs=84.0
Q ss_pred cCCCcccEEEecCCCCccccccccccccccccccCCCceeeecCCCCcccchhhhcCCCCcEEeecCcccccc-cccccc
Q 003037 505 DQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIEELPETCCELFNVQTLEVLDCRSFRR-LPQGFG 583 (854)
Q Consensus 505 ~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~-lp~~i~ 583 (854)
..+++|+.|++++|. +..+| .+..+++|++|++++|.++.+| .+..+++|++|++++|. +.. .|..++
T Consensus 41 ~~l~~L~~L~l~~n~--------i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~~l~ 109 (197)
T 4ezg_A 41 AQMNSLTYITLANIN--------VTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKD-VTSDKIPNLS 109 (197)
T ss_dssp HHHHTCCEEEEESSC--------CSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTT-CBGGGSCCCT
T ss_pred hhcCCccEEeccCCC--------ccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCc-cCcccChhhc
Confidence 345556666666665 55555 4666666666666666555444 45666666666666665 332 344444
Q ss_pred cCCCCcccCceeecCCCCCCcccccccccCCceeEEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHH
Q 003037 584 KLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAI 663 (854)
Q Consensus 584 ~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 663 (854)
.+++|++| +++.| ......
T Consensus 110 ~l~~L~~L------------------------------------------------------~Ls~n-------~i~~~~ 128 (197)
T 4ezg_A 110 GLTSLTLL------------------------------------------------------DISHS-------AHDDSI 128 (197)
T ss_dssp TCTTCCEE------------------------------------------------------ECCSS-------BCBGGG
T ss_pred CCCCCCEE------------------------------------------------------EecCC-------ccCcHh
Confidence 44444433 22221 000111
Q ss_pred hhhCCCCCCCCeEEEeccCCCCCCCCchhhcccCccEEEEecccCCCCCCCCCCCCCCCEEEEcCCC
Q 003037 664 IEALQPPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCDTMPPLGKLPSLEILEIRGNW 730 (854)
Q Consensus 664 ~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~ 730 (854)
+..+..+++|+.|++ +++.....+| .+..+++|+.|++++|.+.. ++.+..+++|+.|++++|.
T Consensus 129 ~~~l~~l~~L~~L~L-~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 129 LTKINTLPKVNSIDL-SYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp HHHHTTCSSCCEEEC-CSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CTTGGGCSSCCEEEECBC-
T ss_pred HHHHhhCCCCCEEEc-cCCCCccccH-hhcCCCCCCEEECCCCCCcC-hHHhccCCCCCEEEeeCcc
Confidence 223334455666666 4443122255 46778888888888886544 4567778888888888776
No 114
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.32 E-value=2.1e-13 Score=148.26 Aligned_cols=71 Identities=11% Similarity=0.067 Sum_probs=52.8
Q ss_pred EEEecCCCCcccccccccc-ccccccccCCCceeeecCCCCcccc-----hhhhcCC-CCcEEeecCccccccc-ccccc
Q 003037 512 TLKITGISGEKRYFRIIVE-IPKEIKKLIHLRFLKLVWLDIEELP-----ETCCELF-NVQTLEVLDCRSFRRL-PQGFG 583 (854)
Q Consensus 512 ~L~L~~~~~~~~~~~~i~~-lP~~i~~L~~L~~L~L~~~~i~~lP-----~~i~~L~-~L~~L~l~~~~~l~~l-p~~i~ 583 (854)
+++++.+. +.. +|..+....+|++|+|++|.++..+ ..+.+++ +|++|++++|. +... +..+.
T Consensus 2 ~~~ls~n~--------~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~ 72 (362)
T 3goz_A 2 NYKLTLHP--------GSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELV 72 (362)
T ss_dssp EEECCCCT--------TCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHH
T ss_pred cccccccc--------chHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHH
Confidence 35677777 554 5665666677999999999999877 5678888 99999999998 5554 44455
Q ss_pred cC-----CCCccc
Q 003037 584 KL-----VNLRNL 591 (854)
Q Consensus 584 ~L-----~~L~~L 591 (854)
.+ ++|++|
T Consensus 73 ~~l~~~~~~L~~L 85 (362)
T 3goz_A 73 QILAAIPANVTSL 85 (362)
T ss_dssp HHHHTSCTTCCEE
T ss_pred HHHhccCCCccEE
Confidence 43 677766
No 115
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.32 E-value=2.4e-11 Score=124.46 Aligned_cols=175 Identities=15% Similarity=0.125 Sum_probs=105.3
Q ss_pred CcccEEEecCCCCccccccccccccccccccCCCceeeecCCCCcccch-hhhcCCCCcEEeecCcccccccccccccCC
Q 003037 508 TCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIEELPE-TCCELFNVQTLEVLDCRSFRRLPQGFGKLV 586 (854)
Q Consensus 508 ~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~~lP~-~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~ 586 (854)
...+.++++++. +..+|..+. .+|++|+|++|.+..++. .+.++++|++|++++|. +..++..
T Consensus 14 ~~~~~l~~~~~~--------l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~----- 77 (251)
T 3m19_A 14 EGKKEVDCQGKS--------LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAG----- 77 (251)
T ss_dssp GGGTEEECTTCC--------CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTT-----
T ss_pred CCCeEEecCCCC--------ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHh-----
Confidence 346677777776 677776665 467777777777776554 46677777777777765 3332211
Q ss_pred CCcccCceeecCCCCCCcccccccccCCceeEEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhh
Q 003037 587 NLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEA 666 (854)
Q Consensus 587 ~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 666 (854)
.
T Consensus 78 -------------------------------------------------------------------------------~ 78 (251)
T 3m19_A 78 -------------------------------------------------------------------------------V 78 (251)
T ss_dssp -------------------------------------------------------------------------------T
T ss_pred -------------------------------------------------------------------------------H
Confidence 1
Q ss_pred CCCCCCCCeEEEeccCCCCCCCCchhhcccCccEEEEecccCCCCCCC-CCCCCCCCEEEEcCCCCceEeCccccCCCCC
Q 003037 667 LQPPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCDTMPP-LGKLPSLEILEIRGNWNVKRVGDEFLGVGGG 745 (854)
Q Consensus 667 l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~ 745 (854)
+..+++|+.|++ +++......|..+..+++|+.|+|++|.+....+. ++.+++|+.|+|++|. +..++...+
T Consensus 79 ~~~l~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~----- 151 (251)
T 3m19_A 79 FDDLTELGTLGL-ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAF----- 151 (251)
T ss_dssp TTTCTTCCEEEC-TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTT-----
T ss_pred hccCCcCCEEEC-CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHc-----
Confidence 122346667777 55544441345567888999999998877654444 6778888888888886 554443211
Q ss_pred CCCccccCCccccCCCccceeeccccccccccccCCCccccCCCccceeeecccc
Q 003037 746 DHLHGISTSSSVIAFPKLKQVLFYNICHWEEWDFGKGDSITIMPQLKKLEFERCT 800 (854)
Q Consensus 746 ~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~ 800 (854)
..+++|+.|++.++ .+..++. ..+..+++|+.|++++|+
T Consensus 152 ------------~~l~~L~~L~L~~N-~l~~~~~---~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 152 ------------DKLTNLQTLSLSTN-QLQSVPH---GAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp ------------TTCTTCCEEECCSS-CCSCCCT---TTTTTCTTCCEEECCSCC
T ss_pred ------------CcCcCCCEEECCCC-cCCccCH---HHHhCCCCCCEEEeeCCc
Confidence 24556666666552 2222221 133445556666665553
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.30 E-value=5.3e-14 Score=161.11 Aligned_cols=204 Identities=16% Similarity=0.111 Sum_probs=123.0
Q ss_pred cccCCCceeeecCCCCcccchhhhcCCCCcEEeecCcccccc-------------cccccccCCCCcccCceeecCCCCC
Q 003037 536 KKLIHLRFLKLVWLDIEELPETCCELFNVQTLEVLDCRSFRR-------------LPQGFGKLVNLRNLSKFIVSRSGGS 602 (854)
Q Consensus 536 ~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~-------------lp~~i~~L~~L~~L~~~~~~~~~~~ 602 (854)
..+++|+.|+|++|.++.+|++|++|++|+.|++++|..+.. .|..++.|++|+.|...
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l-------- 417 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM-------- 417 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG--------
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcch--------
Confidence 567888888888888888888888888888888876642222 23333333333333100
Q ss_pred CcccccccccCCceeEEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccC
Q 003037 603 KLEDLRQLKHLRGSLKIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHY 682 (854)
Q Consensus 603 ~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 682 (854)
+ . ..+.+|..+.++.+ ....++ ...|+.|++ +++
T Consensus 418 -----------~----~-----------------n~~~~L~~l~l~~n--------~i~~l~-----~~~L~~L~L-s~n 451 (567)
T 1dce_A 418 -----------R----A-----------------AYLDDLRSKFLLEN--------SVLKME-----YADVRVLHL-AHK 451 (567)
T ss_dssp -----------G----H-----------------HHHHHHHHHHHHHH--------HHHHHH-----HTTCSEEEC-TTS
T ss_pred -----------h----h-----------------cccchhhhhhhhcc--------cccccC-----ccCceEEEe-cCC
Confidence 0 0 00011122222211 111111 124778888 555
Q ss_pred CCCCCCCchhhcccCccEEEEecccCCCCCC-CCCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCCC
Q 003037 683 IGISGWPSWIVSLNKLKKLVLYQFYLCDTMP-PLGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFP 761 (854)
Q Consensus 683 ~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~-~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~ 761 (854)
.... +|. ++.+++|+.|+|++|.+. .+| .++.+++|+.|+|++|. +..+| . .+.++
T Consensus 452 ~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~------------------l~~l~ 508 (567)
T 1dce_A 452 DLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA-LENVD-G------------------VANLP 508 (567)
T ss_dssp CCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC-CCCCG-G------------------GTTCS
T ss_pred CCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCC-CCCCc-c------------------cCCCC
Confidence 5555 776 778888888888888766 444 47788888888888876 44454 2 23577
Q ss_pred ccceeeccccccccccccCCCccccCCCccceeeecccccCcCCCcCCC----CCCCcCEEEE
Q 003037 762 KLKQVLFYNICHWEEWDFGKGDSITIMPQLKKLEFERCTELKSVPEKLL----RSTTLEELSI 820 (854)
Q Consensus 762 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~----~l~~L~~L~l 820 (854)
+|+.|+++++ .+..+. .+..+..+++|+.|++++| .+..+|..+. .+++|+.|++
T Consensus 509 ~L~~L~Ls~N-~l~~~~--~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 509 RLQELLLCNN-RLQQSA--AIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCEEECCSS-CCCSSS--TTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCcEEECCCC-CCCCCC--CcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence 8888888773 333331 0335667888888888888 4666665443 2677887753
No 117
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.29 E-value=6.9e-11 Score=118.71 Aligned_cols=186 Identities=13% Similarity=0.052 Sum_probs=118.6
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhcccccccc-CeeEEEEeCCccCHHHHHHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHF-EKRIWVCVSDPFDEFRIAKA 174 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~ 174 (854)
...++||++.++.+.+++... ..+.+.|+|++|+|||++|+.+++... ...+ ...+.+..+.......+...
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHK 88 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTT------CCCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHH
Confidence 457999999999999999743 223389999999999999999987421 1112 12334444433333222222
Q ss_pred HHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccHHHH-h-hccCc
Q 003037 175 IIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKMTVA-Q-MMQSN 252 (854)
Q Consensus 175 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~-~-~~~~~ 252 (854)
+........ ...+++.+||+||++.-.....+.+...+.....+.++|+||+..... . .....
T Consensus 89 ~~~~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~ 153 (226)
T 2chg_A 89 IKEFARTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (226)
T ss_dssp HHHHHTSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHhcccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhC
Confidence 111111000 012578899999997655566677777776666778889888765321 1 11223
Q ss_pred ceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHHH
Q 003037 253 DVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTIG 307 (854)
Q Consensus 253 ~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~ 307 (854)
..+.+.+++.++..+++...+...+.... .+..+.|++.++|.|..+..+.
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVKIT----EDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHHTTCHHHHHHHH
T ss_pred ceeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 48999999999999999887642221111 3456678889999998655443
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.29 E-value=9.3e-13 Score=135.88 Aligned_cols=61 Identities=25% Similarity=0.180 Sum_probs=47.5
Q ss_pred hCCCCCCCCeEEEeccCCCCCCCCchhhcccCccEEEEecccCCCCCCCCCCCCCCCEEEEcCCC
Q 003037 666 ALQPPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCDTMPPLGKLPSLEILEIRGNW 730 (854)
Q Consensus 666 ~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~ 730 (854)
.+..+++|+.|++ +++.... +| .+..+++|+.|+|++|.+... +.+..+++|+.|++++|.
T Consensus 123 ~l~~l~~L~~L~L-s~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 123 SLIHLKNLEILSI-RNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp GGTTCTTCCEEEC-TTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred hhcCcccccEEEC-CCCcCCC-Ch-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCc
Confidence 4566778888888 5555544 55 577889999999999877654 678889999999999886
No 119
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.25 E-value=5e-11 Score=118.25 Aligned_cols=59 Identities=20% Similarity=0.286 Sum_probs=36.5
Q ss_pred cEEEecCCCCccccccccccccccccccCCCceeeecCCCCcccchh-hhcCCCCcEEeecCccccccccc
Q 003037 511 RTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIEELPET-CCELFNVQTLEVLDCRSFRRLPQ 580 (854)
Q Consensus 511 r~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~ 580 (854)
+.++.+++. +..+|..+ ..+|++|++++|.++.+|.. +.++++|++|++++|. +..+|.
T Consensus 10 ~~v~c~~~~--------l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~ 69 (208)
T 2o6s_A 10 TTVECYSQG--------RTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPN 69 (208)
T ss_dssp TEEECCSSC--------CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCT
T ss_pred CEEEecCCC--------ccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccCh
Confidence 345555555 66666544 34677777777777766654 4667777777777765 444443
No 120
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.22 E-value=1e-11 Score=123.37 Aligned_cols=100 Identities=25% Similarity=0.457 Sum_probs=71.4
Q ss_pred CCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccccccc-ccccCCCceeeecCCCCcccchh-
Q 003037 480 AKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKE-IKKLIHLRFLKLVWLDIEELPET- 557 (854)
Q Consensus 480 ~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~-i~~L~~L~~L~L~~~~i~~lP~~- 557 (854)
.++|++|.+.++. +..+.+..|.++++|++|++++|. +..+|.. +..+.+|++|+|++|.++.+|..
T Consensus 27 ~~~l~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~--------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 95 (208)
T 2o6s_A 27 PAQTTYLDLETNS---LKSLPNGVFDELTSLTQLYLGGNK--------LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGV 95 (208)
T ss_dssp CTTCSEEECCSSC---CCCCCTTTTTTCTTCSEEECCSSC--------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCCcEEEcCCCc---cCcCChhhhcccccCcEEECCCCc--------cCccChhhcCCCCCcCEEECCCCcCCccCHhH
Confidence 3578888888877 455455567778888888888887 6676654 47788888888888888877764
Q ss_pred hhcCCCCcEEeecCcccccccccc-cccCCCCccc
Q 003037 558 CCELFNVQTLEVLDCRSFRRLPQG-FGKLVNLRNL 591 (854)
Q Consensus 558 i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L 591 (854)
+.++++|++|++++|. +..+|.. +..+++|++|
T Consensus 96 ~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 129 (208)
T 2o6s_A 96 FDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDL 129 (208)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred hcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEE
Confidence 5778888888888877 6666654 4555555555
No 121
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.19 E-value=1.6e-10 Score=113.43 Aligned_cols=120 Identities=14% Similarity=0.163 Sum_probs=96.2
Q ss_pred cCceEEEEeeeCCCCCCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccc-cccccc
Q 003037 458 VEKVRHSMLKLGYDSFPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVE-IPKEIK 536 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~-lP~~i~ 536 (854)
..+++++.+..+.....+.+..+++|++|.+.+|. +.. ++ .+..+++|++|++++|. +.. .|..++
T Consensus 43 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~---~~~-~~-~l~~l~~L~~L~l~~n~--------l~~~~~~~l~ 109 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIH---ATN-YN-PISGLSNLERLRIMGKD--------VTSDKIPNLS 109 (197)
T ss_dssp HHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCC---CSC-CG-GGTTCTTCCEEEEECTT--------CBGGGSCCCT
T ss_pred cCCccEEeccCCCccChHHHhcCCCCCEEEccCCC---CCc-ch-hhhcCCCCCEEEeECCc--------cCcccChhhc
Confidence 45678888888776643478888999999999885 333 23 47889999999999988 554 678888
Q ss_pred ccCCCceeeecCCCCcc-cchhhhcCCCCcEEeecCcccccccccccccCCCCccc
Q 003037 537 KLIHLRFLKLVWLDIEE-LPETCCELFNVQTLEVLDCRSFRRLPQGFGKLVNLRNL 591 (854)
Q Consensus 537 ~L~~L~~L~L~~~~i~~-lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L 591 (854)
++++|++|++++|.++. .|..++++++|++|++++|..+..+| .+..+++|++|
T Consensus 110 ~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L 164 (197)
T 4ezg_A 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSL 164 (197)
T ss_dssp TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEE
T ss_pred CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEE
Confidence 99999999999999884 67788999999999999987577777 57788888777
No 122
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.17 E-value=1.1e-10 Score=117.57 Aligned_cols=60 Identities=23% Similarity=0.121 Sum_probs=45.4
Q ss_pred CCCCCCeEEEeccCCCCCCCCchhhcccCccEEEEecccCCCCCCC-CCCCCCCCEEEEcCCC
Q 003037 669 PPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCDTMPP-LGKLPSLEILEIRGNW 730 (854)
Q Consensus 669 ~~~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~ 730 (854)
.+++|+.|++ .++.... +|..+..+++|+.|+|++|.+....+. +..+++|+.|+|.+|+
T Consensus 110 ~l~~L~~L~L-s~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 110 RLVHLKELFM-CCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TCTTCCEEEC-CSSCCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred cchhhCeEec-cCCcccc-cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 3456666666 4444444 888888899999999999977654443 7889999999999887
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.16 E-value=4.9e-12 Score=149.60 Aligned_cols=124 Identities=19% Similarity=0.214 Sum_probs=72.8
Q ss_pred cCceEEEEeeeCCCC-CCcccccCCCceEEEEecCCC--CcccCchhhhhcCCCcccEEEecCCCCcccccccccccccc
Q 003037 458 VEKVRHSMLKLGYDS-FPDSIFSAKKLRSFLIHSTNK--DLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKE 534 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~-~~~~~~~~~~Lr~L~l~~~~~--~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~ 534 (854)
...++++.+..+... .+..+.....|+.+.+..... ..+. ..+..+..++.|++|+|++|. +..+|..
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~--------l~~l~~~ 242 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQ--------IFNISAN 242 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSC--------CSCCCGG
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCC--------CCCCChh
Confidence 455777777665543 344444444455544433221 0022 357778999999999999999 8899999
Q ss_pred ccccCCCceeeecCCCCcccchhhhcCCCCcEEeecCcccccccccccccCCCCccc
Q 003037 535 IKKLIHLRFLKLVWLDIEELPETCCELFNVQTLEVLDCRSFRRLPQGFGKLVNLRNL 591 (854)
Q Consensus 535 i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L 591 (854)
++++.+|++|+|++|.|+.+|.++++|++|++|+|++|. +..+|..++.|++|++|
T Consensus 243 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 243 IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYF 298 (727)
T ss_dssp GGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEE
T ss_pred hcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEE
Confidence 999999999999999999999999999999999999998 78999999888888887
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.16 E-value=6.7e-11 Score=112.91 Aligned_cols=124 Identities=19% Similarity=0.226 Sum_probs=103.8
Q ss_pred cCceEEEEeeeCCCC---CCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccc-ccc
Q 003037 458 VEKVRHSMLKLGYDS---FPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVE-IPK 533 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~---~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~-lP~ 533 (854)
+.+++++.+..+... ++..+..+++|++|.+.+|. +... ..+..+++|++|++++|. +.. +|.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~---l~~~--~~~~~l~~L~~L~Ls~N~--------l~~~~~~ 89 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG---LISV--SNLPKLPKLKKLELSENR--------IFGGLDM 89 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC---CCCC--SSCCCCSSCCEEEEESCC--------CCSCCCH
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC---CCCh--hhhccCCCCCEEECcCCc--------CchHHHH
Confidence 677899999888754 66667889999999999988 4443 558889999999999998 666 777
Q ss_pred cccccCCCceeeecCCCCcccc--hhhhcCCCCcEEeecCccccccccc----ccccCCCCcccCcee
Q 003037 534 EIKKLIHLRFLKLVWLDIEELP--ETCCELFNVQTLEVLDCRSFRRLPQ----GFGKLVNLRNLSKFI 595 (854)
Q Consensus 534 ~i~~L~~L~~L~L~~~~i~~lP--~~i~~L~~L~~L~l~~~~~l~~lp~----~i~~L~~L~~L~~~~ 595 (854)
.++++++|++|++++|.++.+| ..+.++++|++|++++|. +..+|. .+..+++|++|....
T Consensus 90 ~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 90 LAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp HHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred HHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCC
Confidence 7788999999999999999887 688999999999999998 788886 678899999885443
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.15 E-value=3.6e-11 Score=112.21 Aligned_cols=121 Identities=18% Similarity=0.248 Sum_probs=101.1
Q ss_pred cCceEEEEeeeCCCC---CCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccc-ccc
Q 003037 458 VEKVRHSMLKLGYDS---FPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVE-IPK 533 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~---~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~-lP~ 533 (854)
+.+++++.+.++... ++..+..+++|++|.+.+|. +... ..+..+++|++|++++|. +.. +|.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~---l~~~--~~~~~l~~L~~L~Ls~n~--------i~~~~~~ 82 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG---LTSI--ANLPKLNKLKKLELSDNR--------VSGGLEV 82 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC---CCCC--TTCCCCTTCCEEECCSSC--------CCSCTHH
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC---CCCc--hhhhcCCCCCEEECCCCc--------ccchHHH
Confidence 577888888887754 66667888999999999987 4443 558889999999999998 776 888
Q ss_pred cccccCCCceeeecCCCCcccc--hhhhcCCCCcEEeecCccccccccc----ccccCCCCcccC
Q 003037 534 EIKKLIHLRFLKLVWLDIEELP--ETCCELFNVQTLEVLDCRSFRRLPQ----GFGKLVNLRNLS 592 (854)
Q Consensus 534 ~i~~L~~L~~L~L~~~~i~~lP--~~i~~L~~L~~L~l~~~~~l~~lp~----~i~~L~~L~~L~ 592 (854)
.++++++|++|++++|.++.+| ..++.+++|++|++++|. +..+|. .++.+++|++|.
T Consensus 83 ~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 83 LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp HHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEET
T ss_pred HhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCccccc
Confidence 8888999999999999999876 788999999999999998 777776 578888888873
No 126
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.15 E-value=9.5e-11 Score=118.06 Aligned_cols=121 Identities=21% Similarity=0.336 Sum_probs=56.9
Q ss_pred CceEEEEeeeCCCC--CCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccccccc-c
Q 003037 459 EKVRHSMLKLGYDS--FPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKE-I 535 (854)
Q Consensus 459 ~~~r~l~l~~~~~~--~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~-i 535 (854)
.+++++.+..+... .+..+..+++|++|.+.+|. +..+.+..|..+++|++|+|++|. +..+|.. +
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~---l~~i~~~~~~~l~~L~~L~Ls~N~--------l~~l~~~~~ 108 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ---LGALPVGVFDSLTQLTVLDLGTNQ--------LTVLPSAVF 108 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSC--------CCCCCTTTT
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC---CCCcChhhcccCCCcCEEECCCCc--------CCccChhHh
Confidence 44455555544433 12334445555555555554 333233334455555555555554 4444332 3
Q ss_pred cccCCCceeeecCCCCcccchhhhcCCCCcEEeecCcccccccccc-cccCCCCccc
Q 003037 536 KKLIHLRFLKLVWLDIEELPETCCELFNVQTLEVLDCRSFRRLPQG-FGKLVNLRNL 591 (854)
Q Consensus 536 ~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L 591 (854)
..+.+|++|+|++|.|+.+|..+.++++|++|++++|. +..+|.. +..+++|+.|
T Consensus 109 ~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 109 DRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHA 164 (229)
T ss_dssp TTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEE
Confidence 44555555555555555555555555555555555554 4444432 3334444433
No 127
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.14 E-value=2.3e-10 Score=114.36 Aligned_cols=60 Identities=15% Similarity=0.049 Sum_probs=40.7
Q ss_pred CCCCCeEEEeccCCCCCCCCchhhcccCccEEEEecccCCCCCCC-CCCCCCCCEEEEcCCC
Q 003037 670 PPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCDTMPP-LGKLPSLEILEIRGNW 730 (854)
Q Consensus 670 ~~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~ 730 (854)
+++|+.|+| +++......|..+..+++|+.|+|++|.+....+. +..+++|+.|+|++|+
T Consensus 103 l~~L~~L~L-~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 103 LFSLQLLLL-NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CTTCCEEEC-CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCEEEC-CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 345555555 33333331355677788888888888877665554 7788889999998886
No 128
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.13 E-value=1.7e-10 Score=115.27 Aligned_cols=61 Identities=18% Similarity=0.173 Sum_probs=44.0
Q ss_pred CCCCCCeEEEeccCCCCCCCCchhhcccCccEEEEecccCCCCCCC-CCCCCCCCEEEEcCCC
Q 003037 669 PPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCDTMPP-LGKLPSLEILEIRGNW 730 (854)
Q Consensus 669 ~~~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~ 730 (854)
.+++|+.|++ +++......|..+..+++|+.|+|++|.+....|. +..+++|+.|+|++|+
T Consensus 103 ~l~~L~~L~L-s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 103 GLESLKTLML-RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TCSSCCEEEC-TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCcCCCEEEC-CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 3455666666 44443332466677888999999999887776554 8889999999999887
No 129
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.12 E-value=1.6e-10 Score=119.06 Aligned_cols=98 Identities=20% Similarity=0.194 Sum_probs=68.4
Q ss_pred ccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccccCCCceeeecCCCCcccc
Q 003037 476 SIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIEELP 555 (854)
Q Consensus 476 ~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~~lP 555 (854)
.+..+++|++|.+.++. +.. ++ .+..+++|++|+|++|. +..+|. ++++++|++|++++|.++.+|
T Consensus 36 ~~~~l~~L~~L~l~~n~---i~~-l~-~l~~l~~L~~L~L~~N~--------i~~~~~-l~~l~~L~~L~L~~N~l~~l~ 101 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSN---IQS-LA-GMQFFTNLKELHLSHNQ--------ISDLSP-LKDLTKLEELSVNRNRLKNLN 101 (263)
T ss_dssp CHHHHTTCSEEECTTSC---CCC-CT-TGGGCTTCCEEECCSSC--------CCCCGG-GTTCSSCCEEECCSSCCSCCT
T ss_pred chhhcCcCcEEECcCCC---ccc-ch-HHhhCCCCCEEECCCCc--------cCCChh-hccCCCCCEEECCCCccCCcC
Confidence 45667777777777776 333 33 36777777888887777 677766 777777888888877777776
Q ss_pred hhhhcCCCCcEEeecCcccccccccccccCCCCccc
Q 003037 556 ETCCELFNVQTLEVLDCRSFRRLPQGFGKLVNLRNL 591 (854)
Q Consensus 556 ~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L 591 (854)
.... .+|++|++++|. +..+| .+..+++|++|
T Consensus 102 ~~~~--~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L 133 (263)
T 1xeu_A 102 GIPS--ACLSRLFLDNNE-LRDTD-SLIHLKNLEIL 133 (263)
T ss_dssp TCCC--SSCCEEECCSSC-CSBSG-GGTTCTTCCEE
T ss_pred cccc--CcccEEEccCCc-cCCCh-hhcCcccccEE
Confidence 5333 777778887776 66665 36666666666
No 130
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.11 E-value=4.5e-10 Score=119.84 Aligned_cols=187 Identities=13% Similarity=0.120 Sum_probs=117.5
Q ss_pred cCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhcccccccc-CeeEEEEeCCccCHHHHHH
Q 003037 95 DVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHF-EKRIWVCVSDPFDEFRIAK 173 (854)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~ 173 (854)
...+++|+++.++.+..++... ..+.+.|+|++|+||||+|+.+++... ...+ ...++++.+...... .+.
T Consensus 19 ~~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~-~i~ 90 (323)
T 1sxj_B 19 VLSDIVGNKETIDRLQQIAKDG------NMPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGID-VVR 90 (323)
T ss_dssp SGGGCCSCTHHHHHHHHHHHSC------CCCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHH-HHH
T ss_pred CHHHHHCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChH-HHH
Confidence 3467999999999999998743 223388999999999999999988421 1111 123344433322222 122
Q ss_pred HHHHHhcCCCCCCccHHHHHHHHHHHh-cCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccHHH-H-hhcc
Q 003037 174 AIIEALEGSTPSLGELNSLLERIYASI-ARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKMTV-A-QMMQ 250 (854)
Q Consensus 174 ~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v-~-~~~~ 250 (854)
++++.+..... .+ .+++.++|+||++.-....++.+...+.....++++|+||+.... . ....
T Consensus 91 ~~~~~~~~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~s 156 (323)
T 1sxj_B 91 NQIKHFAQKKL--------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQS 156 (323)
T ss_dssp THHHHHHHBCC--------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHT
T ss_pred HHHHHHHhccc--------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHh
Confidence 22222210000 01 356889999999765555666677777666677888888865432 1 1123
Q ss_pred CcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHH-HHHHH
Q 003037 251 SNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLA-AKTIG 307 (854)
Q Consensus 251 ~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLa-i~~~~ 307 (854)
....+.+.+++.++..+++...+...+.... .+.+..|++.++|.|.. +..+.
T Consensus 157 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 157 QCAILRYSKLSDEDVLKRLLQIIKLEDVKYT----NDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hceEEeecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 3458999999999999999876532111111 34567789999999954 44443
No 131
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.10 E-value=2.1e-10 Score=114.66 Aligned_cols=121 Identities=26% Similarity=0.413 Sum_probs=67.7
Q ss_pred CceEEEEeeeCCCC-C-CcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccccccc-c
Q 003037 459 EKVRHSMLKLGYDS-F-PDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKE-I 535 (854)
Q Consensus 459 ~~~r~l~l~~~~~~-~-~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~-i 535 (854)
..++.+.+..+... + +..+..+++|+.|.+.+|. +..+.|..|.++++|++|+|++|. +..+|.. +
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~---i~~~~~~~~~~l~~L~~L~Ls~N~--------l~~l~~~~f 100 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ---ISELAPDAFQGLRSLNSLVLYGNK--------ITELPKSLF 100 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC---CCEECTTTTTTCSSCCEEECCSSC--------CCCCCTTTT
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc---CCCcCHHHhhCCcCCCEEECCCCc--------CCccCHhHc
Confidence 45566666555544 1 2245555666666666665 444345556666666666666666 5555544 3
Q ss_pred cccCCCceeeecCCCCcccc-hhhhcCCCCcEEeecCcccccccccc-cccCCCCccc
Q 003037 536 KKLIHLRFLKLVWLDIEELP-ETCCELFNVQTLEVLDCRSFRRLPQG-FGKLVNLRNL 591 (854)
Q Consensus 536 ~~L~~L~~L~L~~~~i~~lP-~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L 591 (854)
..+.+|++|+|++|.|+.++ ..+..+++|++|++++|. +..+|.+ +..+++|++|
T Consensus 101 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 101 EGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTM 157 (220)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEE
T ss_pred cCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEE
Confidence 55666666666666666553 345566666666666665 5555443 4445555544
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.09 E-value=1.7e-10 Score=111.06 Aligned_cols=121 Identities=18% Similarity=0.117 Sum_probs=86.0
Q ss_pred cCceEEEEeeeCCCCCCcccccCC-CceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccc-
Q 003037 458 VEKVRHSMLKLGYDSFPDSIFSAK-KLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEI- 535 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~~~~~~~~~~-~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i- 535 (854)
+.+++.+.+.++.....+.+..+. +|++|++.+|. +..+ ..+..+++|++|++++|. +..+|..+
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~---l~~~--~~l~~l~~L~~L~Ls~N~--------l~~~~~~~~ 84 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE---IRKL--DGFPLLRRLKTLLVNNNR--------ICRIGEGLD 84 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSC---CCEE--CCCCCCSSCCEEECCSSC--------CCEECSCHH
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCC---CCcc--cccccCCCCCEEECCCCc--------ccccCcchh
Confidence 556777777777655434455554 78888888777 3332 346777888888888887 77777554
Q ss_pred cccCCCceeeecCCCCcccch--hhhcCCCCcEEeecCcccccccccc----cccCCCCcccC
Q 003037 536 KKLIHLRFLKLVWLDIEELPE--TCCELFNVQTLEVLDCRSFRRLPQG----FGKLVNLRNLS 592 (854)
Q Consensus 536 ~~L~~L~~L~L~~~~i~~lP~--~i~~L~~L~~L~l~~~~~l~~lp~~----i~~L~~L~~L~ 592 (854)
+.+++|++|++++|.|..+|. .+..+++|++|++++|. +..+|.. ++.+++|+.|.
T Consensus 85 ~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld 146 (176)
T 1a9n_A 85 QALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLD 146 (176)
T ss_dssp HHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEET
T ss_pred hcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeC
Confidence 777888888888888877776 67778888888888877 6677764 66777777773
No 133
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.08 E-value=7.4e-11 Score=127.90 Aligned_cols=93 Identities=15% Similarity=0.201 Sum_probs=62.0
Q ss_pred eEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccccccc-cc-ccCCCceeeecCCCCcccch-hhhc
Q 003037 484 RSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKE-IK-KLIHLRFLKLVWLDIEELPE-TCCE 560 (854)
Q Consensus 484 r~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~-i~-~L~~L~~L~L~~~~i~~lP~-~i~~ 560 (854)
+++.+.++. +.. +|..+ ...|++|+|++|. +..+|.. +. ++.+|++|+|++|.|+.+|. .+.+
T Consensus 21 ~~l~c~~~~---l~~-iP~~~--~~~l~~L~Ls~N~--------l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~ 86 (361)
T 2xot_A 21 NILSCSKQQ---LPN-VPQSL--PSYTALLDLSHNN--------LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP 86 (361)
T ss_dssp TEEECCSSC---CSS-CCSSC--CTTCSEEECCSSC--------CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTT
T ss_pred CEEEeCCCC---cCc-cCccC--CCCCCEEECCCCC--------CCccChhhhhhcccccCEEECCCCcCCccChhhccC
Confidence 466666665 444 34323 3457788888887 7776654 34 78888888888888887764 5778
Q ss_pred CCCCcEEeecCcccccccccc-cccCCCCccc
Q 003037 561 LFNVQTLEVLDCRSFRRLPQG-FGKLVNLRNL 591 (854)
Q Consensus 561 L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L 591 (854)
+++|++|++++|. +..+|.. +..+++|+.|
T Consensus 87 l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 87 VPNLRYLDLSSNH-LHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp CTTCCEEECCSSC-CCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCc-CCcCCHHHhCCCcCCCEE
Confidence 8888888888877 6666553 4555555555
No 134
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.07 E-value=1.5e-09 Score=115.85 Aligned_cols=268 Identities=13% Similarity=0.059 Sum_probs=147.1
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAI 175 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 175 (854)
...+||++..++.+...+...... ......+.|+|++|+|||++|+.+++. ... ..+++..+.......+
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~-~~~~~~vll~G~~GtGKT~la~~i~~~--~~~---~~~~~~~~~~~~~~~l---- 80 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKAR-KEPLEHLLLFGPPGLGKTTLAHVIAHE--LGV---NLRVTSGPAIEKPGDL---- 80 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHH-CSCCCCCEEECCTTCCCHHHHHHHHHH--HTC---CEEEECTTTCCSHHHH----
T ss_pred HHHhhCHHHHHHHHHHHHHHHHcc-CCCCCcEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEeccccCChHHH----
Confidence 467999999999988887642210 123456889999999999999999884 222 2234443332222111
Q ss_pred HHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCC------------------CCcEEE
Q 003037 176 IEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGL------------------RGSKIL 237 (854)
Q Consensus 176 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~il 237 (854)
...+... ..++.+|+||++..-.......+...+.... .+.++|
T Consensus 81 -----------------~~~l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i 142 (324)
T 1hqc_A 81 -----------------AAILANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLI 142 (324)
T ss_dssp -----------------HHHHTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEE
T ss_pred -----------------HHHHHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEE
Confidence 1111110 1356799999997655455555665554321 234566
Q ss_pred EecccHH-HHhhc-cC-cceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHHHhhhccC-
Q 003037 238 VTTRKMT-VAQMM-QS-NDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTIGSLLRFK- 313 (854)
Q Consensus 238 vTtR~~~-v~~~~-~~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~l~~~- 313 (854)
.||.... +...+ .. ...+.+.+++.+|..+++...+........ .+..+.|++.++|+|..+..+...+...
T Consensus 143 ~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 143 GATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRIT----EEAALEIGRRSRGTMRVAKRLFRRVRDFA 218 (324)
T ss_dssp EEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHHHHHHHHSCSCHHHHHHHHHHHTTTS
T ss_pred EeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 6665432 11111 11 258899999999999999887643222111 3456778889999998887665443211
Q ss_pred -------CCHHHHHHHHhhhcCCccccccCccchhhcccCCChHHHHHHHhhhh-cCCCC-c---------eechHHHH-
Q 003037 314 -------RSSREWQSILDSEIGQLEEFERGLLPPLLLSYNDMPSVIKWSFSYCA-IFPKD-Y---------NIEKDELI- 374 (854)
Q Consensus 314 -------~~~~~w~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~k~cf~~~s-~fp~~-~---------~i~~~~li- 374 (854)
-+.+....++.. +...+..++...+..+..+. .|..+ + .+++..+.
T Consensus 219 ~~~~~~~i~~~~~~~~~~~---------------~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~ 283 (324)
T 1hqc_A 219 QVAGEEVITRERALEALAA---------------LGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEE 283 (324)
T ss_dssp TTTSCSCCCHHHHHHHHHH---------------HTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHH---------------hcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHH
Confidence 133333333322 12233445555555554433 23222 0 12222222
Q ss_pred ---HHHHHhCcccCC-CCchHHHHHHHHHH-HHHhcccccc
Q 003037 375 ---KLWLAQGYIRPK-ENKELEMIVEEYFD-YLAARSFFQE 410 (854)
Q Consensus 375 ---~~Wia~g~i~~~-~~~~~e~~~~~~l~-~L~~~sli~~ 410 (854)
.+-+..|++... .+....+.|.+||+ ++.+|+|||+
T Consensus 284 ~l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 284 VHEPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HTHHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HHhHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 234556777543 34556677777776 7777877774
No 135
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.07 E-value=2.6e-10 Score=114.00 Aligned_cols=122 Identities=17% Similarity=0.175 Sum_probs=76.8
Q ss_pred cCceEEEEeeeCCCCCC---cccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccc-
Q 003037 458 VEKVRHSMLKLGYDSFP---DSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPK- 533 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~~~---~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~- 533 (854)
+..++.+.+..+..... ..+..+++|++|.+.+|. +..+.+..|.++++|++|+|++|. +..+|.
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~---i~~i~~~~~~~l~~L~~L~Ls~N~--------l~~~~~~ 99 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK---ITDIEEGAFEGASGVNEILLTSNR--------LENVQHK 99 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECCSSC--------CCCCCGG
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc---CCEECHHHhCCCCCCCEEECCCCc--------cCccCHh
Confidence 34456666666655421 225566777777777766 444445556777777777777776 555544
Q ss_pred cccccCCCceeeecCCCCccc-chhhhcCCCCcEEeecCccccccc-ccccccCCCCccc
Q 003037 534 EIKKLIHLRFLKLVWLDIEEL-PETCCELFNVQTLEVLDCRSFRRL-PQGFGKLVNLRNL 591 (854)
Q Consensus 534 ~i~~L~~L~~L~L~~~~i~~l-P~~i~~L~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L 591 (854)
.++.+.+|++|+|++|.|+.+ |..+.++++|++|++++|. +..+ |..+..+++|+.|
T Consensus 100 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 158 (220)
T 2v70_A 100 MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTL 158 (220)
T ss_dssp GGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEE
T ss_pred HhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEE
Confidence 366677777777777777665 4556677777777777776 5555 4556666666655
No 136
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.98 E-value=2.7e-10 Score=106.22 Aligned_cols=100 Identities=20% Similarity=0.279 Sum_probs=86.2
Q ss_pred cCCCceEEEEecCCCCccc-CchhhhhcCCCcccEEEecCCCCccccccccccccccccccCCCceeeecCCCCcc-cch
Q 003037 479 SAKKLRSFLIHSTNKDLIS-PVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIEE-LPE 556 (854)
Q Consensus 479 ~~~~Lr~L~l~~~~~~~~~-~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~~-lP~ 556 (854)
..++|+.|.+.++. +. +.+|..+..+++|++|++++|. +..+ ..++++++|++|++++|.++. +|.
T Consensus 15 ~~~~l~~L~l~~n~---l~~~~~~~~~~~l~~L~~L~l~~n~--------l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~ 82 (149)
T 2je0_A 15 TPSDVKELVLDNSR---SNEGKLEGLTDEFEELEFLSTINVG--------LTSI-ANLPKLNKLKKLELSDNRVSGGLEV 82 (149)
T ss_dssp CGGGCSEEECTTCB---CBTTBCCSCCTTCTTCCEEECTTSC--------CCCC-TTCCCCTTCCEEECCSSCCCSCTHH
T ss_pred CCccCeEEEccCCc---CChhHHHHHHhhcCCCcEEECcCCC--------CCCc-hhhhcCCCCCEEECCCCcccchHHH
Confidence 35789999999987 44 3467778999999999999998 7777 778999999999999999998 888
Q ss_pred hhhcCCCCcEEeecCcccccccc--cccccCCCCccc
Q 003037 557 TCCELFNVQTLEVLDCRSFRRLP--QGFGKLVNLRNL 591 (854)
Q Consensus 557 ~i~~L~~L~~L~l~~~~~l~~lp--~~i~~L~~L~~L 591 (854)
.++++++|++|++++|. +..+| ..++.+++|++|
T Consensus 83 ~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L 118 (149)
T 2je0_A 83 LAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSL 118 (149)
T ss_dssp HHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEE
T ss_pred HhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEE
Confidence 88889999999999998 77765 778888888887
No 137
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.96 E-value=5e-09 Score=111.85 Aligned_cols=188 Identities=12% Similarity=0.059 Sum_probs=117.2
Q ss_pred cCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhcccccccc-CeeEEEEeCCccCHHHHHH
Q 003037 95 DVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHF-EKRIWVCVSDPFDEFRIAK 173 (854)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~ 173 (854)
.-.+++|+++.++.+..++... ..+.+.|+|++|+||||+|+.+++... ...+ ...+.+..+...... .+.
T Consensus 23 ~~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~-~~~ 94 (327)
T 1iqp_A 23 RLDDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNASDERGIN-VIR 94 (327)
T ss_dssp STTTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETTCHHHHH-TTH
T ss_pred CHHHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCceEEeeccccCchH-HHH
Confidence 3467999999999999988743 233488999999999999999988411 1111 123333333211111 011
Q ss_pred HHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccHHH-Hhh-ccC
Q 003037 174 AIIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKMTV-AQM-MQS 251 (854)
Q Consensus 174 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v-~~~-~~~ 251 (854)
..+....... ....+++.++|+||++.-....+..+...+.....++++|+||..... ... ...
T Consensus 95 ~~~~~~~~~~--------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr 160 (327)
T 1iqp_A 95 EKVKEFARTK--------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR 160 (327)
T ss_dssp HHHHHHHHSC--------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHT
T ss_pred HHHHHHHhhC--------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhh
Confidence 1111100000 001256889999999766556777788777766677889988876432 111 122
Q ss_pred cceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHHHh
Q 003037 252 NDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTIGS 308 (854)
Q Consensus 252 ~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~ 308 (854)
...+.+.+++.++..+++...+...+.. .-.+..+.|++.++|.|..+..+..
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 161 CAIFRFRPLRDEDIAKRLRYIAENEGLE----LTEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHTTTCE----ECHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcEEEecCCCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 3478999999999999998876432211 1234567788899999987655443
No 138
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.96 E-value=1.1e-09 Score=125.42 Aligned_cols=118 Identities=13% Similarity=0.102 Sum_probs=90.0
Q ss_pred ceEEEEeeeCCCCCCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccccC
Q 003037 460 KVRHSMLKLGYDSFPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLI 539 (854)
Q Consensus 460 ~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~ 539 (854)
.++.+.+.++.....+.+..+++|++|.+++|. +.. +|..++++++|++|+|++|. +..+| .+++|+
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~---l~~-lp~~~~~l~~L~~L~Ls~N~--------l~~lp-~l~~l~ 508 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNR---LRA-LPPALAALRCLEVLQASDNA--------LENVD-GVANLP 508 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSC---CCC-CCGGGGGCTTCCEEECCSSC--------CCCCG-GGTTCS
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCccc---ccc-cchhhhcCCCCCEEECCCCC--------CCCCc-ccCCCC
Confidence 467777777766533347888888888888887 454 57778888888888888888 77787 788888
Q ss_pred CCceeeecCCCCccc--chhhhcCCCCcEEeecCccccccccccccc----CCCCccc
Q 003037 540 HLRFLKLVWLDIEEL--PETCCELFNVQTLEVLDCRSFRRLPQGFGK----LVNLRNL 591 (854)
Q Consensus 540 ~L~~L~L~~~~i~~l--P~~i~~L~~L~~L~l~~~~~l~~lp~~i~~----L~~L~~L 591 (854)
+|++|+|++|.|+.+ |..+++|++|++|++++|. +..+|..+.. +++|+.|
T Consensus 509 ~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 509 RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEE
T ss_pred CCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCcc
Confidence 888888888888877 7888888888888888887 7777665432 5566555
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.96 E-value=6.4e-09 Score=111.05 Aligned_cols=223 Identities=11% Similarity=0.037 Sum_probs=123.3
Q ss_pred cCCCceeeecCCCCcccch-hhhcCCCCcEEeecCcccccccccc-cccCCCCcccCceeecCCCCCCcccccccccCCc
Q 003037 538 LIHLRFLKLVWLDIEELPE-TCCELFNVQTLEVLDCRSFRRLPQG-FGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRG 615 (854)
Q Consensus 538 L~~L~~L~L~~~~i~~lP~-~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~ 615 (854)
+.+|+.|+|.. .++.+++ .+..+++|+.|++.+|. +..++.. +..+.++..+..- .... ...+..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~-----~~~~---~~~~~~--- 166 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKT-APNLLPEALADSVTAIFIPLG-----SSDA---YRFKNR--- 166 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTT-----CTHH---HHTSTT---
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCC-ccccchhhhcCCCceEEecCc-----chhh---hhcccc---
Confidence 78888888888 7777775 47778888888888776 5556553 3333333333110 0000 000000
Q ss_pred eeEEecccCCCChhHHHHhhccCCCCCC-cEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCchhhc
Q 003037 616 SLKIQGLGNVRDADEAKSAELEKKKNLL-DLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPSWIVS 694 (854)
Q Consensus 616 ~L~i~~l~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~ 694 (854)
.....+.++..|+ .+.+... + .....+...-..+.++..+.+ .+......+......
T Consensus 167 ---------------i~~~~f~~~~~L~~~i~~~~~-~-----~l~~~~~~~~~~~~~~~~l~~-~~~l~~~~~~~l~~~ 224 (329)
T 3sb4_A 167 ---------------WEHFAFIEGEPLETTIQVGAM-G-----KLEDEIMKAGLQPRDINFLTI-EGKLDNADFKLIRDY 224 (329)
T ss_dssp ---------------TTTSCEEESCCCEEEEEECTT-C-----CHHHHHHHTTCCGGGCSEEEE-EECCCHHHHHHHHHH
T ss_pred ---------------ccccccccccccceeEEecCC-C-----cHHHHHhhcccCccccceEEE-eeeecHHHHHHHHHh
Confidence 0001122333333 2222211 0 011122222234556677777 443322101111113
Q ss_pred ccCccEEEEecccCCCCCCC-CCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCCCccc-eeeccccc
Q 003037 695 LNKLKKLVLYQFYLCDTMPP-LGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLK-QVLFYNIC 772 (854)
Q Consensus 695 l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~-~L~l~~~~ 772 (854)
+++|+.|+|++|......+. +..+++|+.|.|.+| ++.|+...+ .++++|+ .+.+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF-----------------~~~~~L~~~l~l~~-- 283 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVF-----------------SNCGRLAGTLELPA-- 283 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTT-----------------TTCTTCCEEEEECT--
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHh-----------------hCChhccEEEEEcc--
Confidence 77888888887764433222 778888888888875 677776543 2566777 777765
Q ss_pred cccccccCCCccccCCCccceeeecccccCcCCCc-CCCCCCCcCEEEE
Q 003037 773 HWEEWDFGKGDSITIMPQLKKLEFERCTELKSVPE-KLLRSTTLEELSI 820 (854)
Q Consensus 773 ~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l 820 (854)
.+..+.. ..+..+++|+.|++..+ .+..++. .+.++++|+.|+.
T Consensus 284 ~l~~I~~---~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 284 SVTAIEF---GAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TCCEECT---TTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEEC
T ss_pred cceEEch---hhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhcc
Confidence 4444432 35667899999998766 6777765 6777888888763
No 140
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.95 E-value=1.6e-09 Score=103.28 Aligned_cols=112 Identities=20% Similarity=0.180 Sum_probs=99.3
Q ss_pred cCceEEEEeeeCCCCCCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccccc--ccc
Q 003037 458 VEKVRHSMLKLGYDSFPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIP--KEI 535 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP--~~i 535 (854)
..+++.+.+..+.......+..+++|++|.+.+|. +...+|..+.++++|++|++++|. +..+| ..+
T Consensus 48 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls~N~--------l~~~~~~~~l 116 (168)
T 2ell_A 48 FVNLEFLSLINVGLISVSNLPKLPKLKKLELSENR---IFGGLDMLAEKLPNLTHLNLSGNK--------LKDISTLEPL 116 (168)
T ss_dssp GGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCC---CCSCCCHHHHHCTTCCEEECBSSS--------CCSSGGGGGG
T ss_pred CCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCc---CchHHHHHHhhCCCCCEEeccCCc--------cCcchhHHHH
Confidence 56799999999887755788899999999999998 555577778889999999999999 88876 789
Q ss_pred cccCCCceeeecCCCCcccch----hhhcCCCCcEEeecCcccccccccc
Q 003037 536 KKLIHLRFLKLVWLDIEELPE----TCCELFNVQTLEVLDCRSFRRLPQG 581 (854)
Q Consensus 536 ~~L~~L~~L~L~~~~i~~lP~----~i~~L~~L~~L~l~~~~~l~~lp~~ 581 (854)
+.+++|++|++++|.++.+|. .+..+++|++|++++|. ..++|.+
T Consensus 117 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~ 165 (168)
T 2ell_A 117 KKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPDS 165 (168)
T ss_dssp SSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCSS
T ss_pred hcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC-hhhcccc
Confidence 999999999999999999987 78999999999999998 7888864
No 141
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.94 E-value=1.2e-08 Score=106.07 Aligned_cols=208 Identities=9% Similarity=-0.032 Sum_probs=126.5
Q ss_pred CccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhcccccc------ccCeeEEEEeCCccCHHH
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVIN------HFEKRIWVCVSDPFDEFR 170 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~------~f~~~~wv~~s~~~~~~~ 170 (854)
..+.||++|+++|...|...-. .+....+.|+|++|+|||++|+.|++...... .| ..+.++.....+...
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~--~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~ 96 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLM--SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HH
T ss_pred cccCCHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHH
Confidence 3489999999999988876543 34677889999999999999999998532111 12 456777777778899
Q ss_pred HHHHHHHHhcCCCCCC-ccHHHHHHHHHHH--hcCCeEEEEEecCCCcChhhHHHHHHhhc--CCC-CCcEEEEecccHH
Q 003037 171 IAKAIIEALEGSTPSL-GELNSLLERIYAS--IARKKFLLVLDDVWTEDYNKWETFQRCLK--NGL-RGSKILVTTRKMT 244 (854)
Q Consensus 171 ~~~~i~~~l~~~~~~~-~~~~~~~~~l~~~--l~~k~~LlVlDdv~~~~~~~~~~l~~~l~--~~~-~gs~ilvTtR~~~ 244 (854)
++..|++++.+..... ...+.+...+... -.++++++|||++..-. .-+.+...+. ... ....||.++...+
T Consensus 97 ~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 97 LYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp HHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcc
Confidence 9999999996653222 2233333333321 24678999999985432 2223333332 111 1122333332211
Q ss_pred -----HHh----hccCcceEecCCCCHHHHHHHHHHHhcCCCC-----------------------------------CC
Q 003037 245 -----VAQ----MMQSNDVILIRELSEQACWSLFEQLAFFGRP-----------------------------------RS 280 (854)
Q Consensus 245 -----v~~----~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~-----------------------------------~~ 280 (854)
+.. .+. ...+.+.+++.+|..+++..++..... ..
T Consensus 175 ~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 253 (318)
T 3te6_A 175 TIREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKI 253 (318)
T ss_dssp CCHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEEC
T ss_pred cchhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccc
Confidence 111 111 247899999999999999877632110 01
Q ss_pred CchHHHHHHHHHHhhcCCCcHHHHHHHhhh
Q 003037 281 ECEQLIEIGRKIVGKCKGLPLAAKTIGSLL 310 (854)
Q Consensus 281 ~~~~~~~~~~~I~~~~~GlPLai~~~~~~l 310 (854)
.+..++-+|+.++...|-.-.|+.++-...
T Consensus 254 ~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~ 283 (318)
T 3te6_A 254 NNKITQLIAKNVANVSGSTEKAFKICEAAV 283 (318)
T ss_dssp CHHHHHHHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCChHHHHHHHHHHHH
Confidence 345566666666666777777776664433
No 142
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.94 E-value=9.7e-10 Score=105.63 Aligned_cols=103 Identities=17% Similarity=0.126 Sum_probs=86.1
Q ss_pred cccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccccCCCceeeecCCCCccc
Q 003037 475 DSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIEEL 554 (854)
Q Consensus 475 ~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~~l 554 (854)
..+.++.+|++|.+.+|. +.. +|......++|++|++++|. +..+ ..++.+.+|++|++++|.|+.+
T Consensus 13 ~~~~~~~~L~~L~l~~n~---l~~-i~~~~~~~~~L~~L~Ls~N~--------l~~~-~~l~~l~~L~~L~Ls~N~l~~~ 79 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYK---IPV-IENLGATLDQFDAIDFSDNE--------IRKL-DGFPLLRRLKTLLVNNNRICRI 79 (176)
T ss_dssp CEEECTTSCEEEECTTSC---CCS-CCCGGGGTTCCSEEECCSSC--------CCEE-CCCCCCSSCCEEECCSSCCCEE
T ss_pred HhcCCcCCceEEEeeCCC---Cch-hHHhhhcCCCCCEEECCCCC--------CCcc-cccccCCCCCEEECCCCccccc
Confidence 446678999999999998 444 35433334499999999999 7777 6789999999999999999999
Q ss_pred chhh-hcCCCCcEEeecCccccccccc--ccccCCCCccc
Q 003037 555 PETC-CELFNVQTLEVLDCRSFRRLPQ--GFGKLVNLRNL 591 (854)
Q Consensus 555 P~~i-~~L~~L~~L~l~~~~~l~~lp~--~i~~L~~L~~L 591 (854)
|+.+ ..+++|++|++++|. +..+|. .+..+++|++|
T Consensus 80 ~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L 118 (176)
T 1a9n_A 80 GEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYL 118 (176)
T ss_dssp CSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEE
T ss_pred CcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEE
Confidence 9766 899999999999998 888887 67777777777
No 143
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.94 E-value=7.4e-10 Score=130.94 Aligned_cols=103 Identities=19% Similarity=0.234 Sum_probs=53.8
Q ss_pred CceEEEEeeeCCCC-CCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccc
Q 003037 459 EKVRHSMLKLGYDS-FPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKK 537 (854)
Q Consensus 459 ~~~r~l~l~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~ 537 (854)
..++.|.+.++... ++..++.+++|++|.+.+|. +.. +|..|.+|++|++|+|++|. +..+|..|++
T Consensus 224 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~---l~~-lp~~~~~l~~L~~L~Ls~N~--------l~~lp~~~~~ 291 (727)
T 4b8c_D 224 QLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS---LTE-LPAEIKNLSNLRVLDLSHNR--------LTSLPAELGS 291 (727)
T ss_dssp CCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSC---CSC-CCGGGGGGTTCCEEECTTSC--------CSSCCSSGGG
T ss_pred CCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCc---Ccc-cChhhhCCCCCCEEeCcCCc--------CCccChhhcC
Confidence 34455555544433 34444455555555555554 332 34445555555555555555 4455555555
Q ss_pred cCCCceeeecCCCCcccchhhhcCCCCcEEeecCcc
Q 003037 538 LIHLRFLKLVWLDIEELPETCCELFNVQTLEVLDCR 573 (854)
Q Consensus 538 L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~ 573 (854)
|.+|++|+|++|.|+.+|.++++|++|++|+|++|.
T Consensus 292 l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp GTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSC
T ss_pred CCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCc
Confidence 555555555555555555555555555555555555
No 144
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.90 E-value=3.6e-09 Score=103.18 Aligned_cols=98 Identities=16% Similarity=0.322 Sum_probs=81.4
Q ss_pred CCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccccc-ccccccCCCceeeecCCCCcccch-hh
Q 003037 481 KKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIP-KEIKKLIHLRFLKLVWLDIEELPE-TC 558 (854)
Q Consensus 481 ~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP-~~i~~L~~L~~L~L~~~~i~~lP~-~i 558 (854)
++|++|.+.+|. +.. +|..|.++++|++|+|++|. +..+| ..|.++.+|++|+|++|.|+.+|. .+
T Consensus 31 ~~l~~L~L~~n~---i~~-ip~~~~~l~~L~~L~Ls~N~--------i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f 98 (193)
T 2wfh_A 31 RDVTELYLDGNQ---FTL-VPKELSNYKHLTLIDLSNNR--------ISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTF 98 (193)
T ss_dssp TTCCEEECCSSC---CCS-CCGGGGGCTTCCEEECCSSC--------CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred CCCCEEECCCCc---Cch-hHHHhhcccCCCEEECCCCc--------CCEeCHhHccCCCCCCEEECCCCccCEeCHHHh
Confidence 679999999887 544 56778899999999999998 77776 468899999999999999998875 58
Q ss_pred hcCCCCcEEeecCcccccccccc-cccCCCCccc
Q 003037 559 CELFNVQTLEVLDCRSFRRLPQG-FGKLVNLRNL 591 (854)
Q Consensus 559 ~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L 591 (854)
.++++|++|++++|. +..+|.+ +..+++|++|
T Consensus 99 ~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 131 (193)
T 2wfh_A 99 DGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHL 131 (193)
T ss_dssp TTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEE
T ss_pred CCCCCCCEEECCCCC-CCeeChhhhhcCccccEE
Confidence 889999999999988 7888875 6677777777
No 145
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.90 E-value=2.5e-09 Score=104.25 Aligned_cols=115 Identities=21% Similarity=0.283 Sum_probs=85.1
Q ss_pred EEEeeeCCCC-CCcccccCCCceEEEEecCCCCcccCchhh-hhcCCCcccEEEecCCCCccccccccccc-cccccccC
Q 003037 463 HSMLKLGYDS-FPDSIFSAKKLRSFLIHSTNKDLISPVLPV-LFDQLTCLRTLKITGISGEKRYFRIIVEI-PKEIKKLI 539 (854)
Q Consensus 463 ~l~l~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~-~~~~l~~Lr~L~L~~~~~~~~~~~~i~~l-P~~i~~L~ 539 (854)
.+.+..+... +|..+. .++++|.+.++. +..+.+. .|..+++|++|+|++|. +..+ |..++++.
T Consensus 12 ~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~---i~~~~~~~~~~~l~~L~~L~Ls~N~--------l~~~~~~~~~~l~ 78 (192)
T 1w8a_A 12 TVDCTGRGLKEIPRDIP--LHTTELLLNDNE---LGRISSDGLFGRLPHLVKLELKRNQ--------LTGIEPNAFEGAS 78 (192)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSCC---CCSBCCSCSGGGCTTCCEEECCSSC--------CCCBCTTTTTTCT
T ss_pred EEEcCCCCcCcCccCCC--CCCCEEECCCCc---CCccCCccccccCCCCCEEECCCCC--------CCCcCHhHcCCcc
Confidence 4444444433 444333 388899988887 5553333 47889999999999988 6666 67888999
Q ss_pred CCceeeecCCCCcccchh-hhcCCCCcEEeecCccccccc-ccccccCCCCccc
Q 003037 540 HLRFLKLVWLDIEELPET-CCELFNVQTLEVLDCRSFRRL-PQGFGKLVNLRNL 591 (854)
Q Consensus 540 ~L~~L~L~~~~i~~lP~~-i~~L~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L 591 (854)
+|++|+|++|.|+.+|.. +.++++|++|++++|. +..+ |..+..+++|++|
T Consensus 79 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSL 131 (192)
T ss_dssp TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEE
T ss_pred cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEE
Confidence 999999999998877654 7888999999999988 5544 6667778777777
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.88 E-value=2.7e-09 Score=102.11 Aligned_cols=106 Identities=17% Similarity=0.202 Sum_probs=75.6
Q ss_pred EEeeeCCCC-CCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccccccc-ccccCCC
Q 003037 464 SMLKLGYDS-FPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKE-IKKLIHL 541 (854)
Q Consensus 464 l~l~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~-i~~L~~L 541 (854)
+.+.++... +|..+. ++|++|.+.+|. +.++.|..|.++++|++|+|++|. +..+|.. +.++.+|
T Consensus 17 l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls~N~--------l~~i~~~~~~~l~~L 83 (174)
T 2r9u_A 17 VNCQNIRLASVPAGIP--TDKQRLWLNNNQ---ITKLEPGVFDHLVNLQQLYFNSNK--------LTAIPTGVFDKLTQL 83 (174)
T ss_dssp EECCSSCCSSCCSCCC--TTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSC--------CCCCCTTTTTTCTTC
T ss_pred EEeCCCCCCccCCCcC--CCCcEEEeCCCC---ccccCHHHhcCCcCCCEEECCCCC--------CCccChhHhCCcchh
Confidence 444444332 444443 778888888887 556556778888888888888887 7777765 4778888
Q ss_pred ceeeecCCCCcccchh-hhcCCCCcEEeecCcccccccccccc
Q 003037 542 RFLKLVWLDIEELPET-CCELFNVQTLEVLDCRSFRRLPQGFG 583 (854)
Q Consensus 542 ~~L~L~~~~i~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~i~ 583 (854)
++|+|++|.|+.+|.. +.++++|++|++++|. +...|..+.
T Consensus 84 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~~~~~ 125 (174)
T 2r9u_A 84 TQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP-WDCECRDIM 125 (174)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-BCTTBGGGH
T ss_pred hEEECCCCccceeCHHHhccccCCCEEEeCCCC-cccccccHH
Confidence 8888888888888765 7788888888888887 555554443
No 147
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.88 E-value=3.2e-09 Score=114.96 Aligned_cols=122 Identities=18% Similarity=0.157 Sum_probs=68.3
Q ss_pred cCceEEEEeeeCCCC-CC-cccc-cCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccc-
Q 003037 458 VEKVRHSMLKLGYDS-FP-DSIF-SAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPK- 533 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~-~~-~~~~-~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~- 533 (854)
+..++.|.+..+... ++ ..+. .+++|++|.+.+|. +..+.+..|.++++|++|+|++|. +..+|.
T Consensus 38 ~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~---i~~i~~~~~~~l~~L~~L~Ls~N~--------l~~~~~~ 106 (361)
T 2xot_A 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH---LNFISSEAFVPVPNLRYLDLSSNH--------LHTLDEF 106 (361)
T ss_dssp CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECCSSC--------CCEECTT
T ss_pred CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc---CCccChhhccCCCCCCEEECCCCc--------CCcCCHH
Confidence 344556666655544 22 2233 56666666666665 444344456666666666666666 555543
Q ss_pred cccccCCCceeeecCCCCccc-chhhhcCCCCcEEeecCccccccccccc----ccCCCCccc
Q 003037 534 EIKKLIHLRFLKLVWLDIEEL-PETCCELFNVQTLEVLDCRSFRRLPQGF----GKLVNLRNL 591 (854)
Q Consensus 534 ~i~~L~~L~~L~L~~~~i~~l-P~~i~~L~~L~~L~l~~~~~l~~lp~~i----~~L~~L~~L 591 (854)
.+.++.+|++|+|++|.|+.+ |..+.++++|++|++++|. +..+|..+ ..+++|++|
T Consensus 107 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L 168 (361)
T 2xot_A 107 LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLL 168 (361)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEE
T ss_pred HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEE
Confidence 355666666666666666655 3456666666666666665 55666543 234444444
No 148
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.87 E-value=1.3e-09 Score=116.46 Aligned_cols=260 Identities=10% Similarity=0.084 Sum_probs=149.2
Q ss_pred CCCceEEEEecCCCCcccCchhhhhcC-CCcccEEEecCCCCccccccccccccccccccCCCceeeecCCCCcccch-h
Q 003037 480 AKKLRSFLIHSTNKDLISPVLPVLFDQ-LTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIEELPE-T 557 (854)
Q Consensus 480 ~~~Lr~L~l~~~~~~~~~~~l~~~~~~-l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~~lP~-~ 557 (854)
+.+++.|.+.++- ...--..+.. +++|++|||++|. +......-+.+..++++.+..+ .+|+ .
T Consensus 24 ~~~l~~L~l~g~i----~~~~~~~l~~~l~~L~~LdLs~n~--------i~~~~~~~~~~~~~~~~~~~~~---~I~~~a 88 (329)
T 3sb4_A 24 ANSITHLTLTGKL----NAEDFRHLRDEFPSLKVLDISNAE--------IKMYSGKAGTYPNGKFYIYMAN---FVPAYA 88 (329)
T ss_dssp HHHCSEEEEEEEE----CHHHHHHHHHSCTTCCEEEEEEEE--------ECCEEESSSSSGGGCCEEECTT---EECTTT
T ss_pred hCceeEEEEeccc----cHHHHHHHHHhhccCeEEecCcce--------eEEecCcccccccccccccccc---ccCHHH
Confidence 5678888888752 1111122334 8889999999998 6522111223333566666655 3443 4
Q ss_pred hhc--------CCCCcEEeecCcccccccccc-cccCCCCcccCceeecCCCCCCcccccccccCCceeEEecccCCCCh
Q 003037 558 CCE--------LFNVQTLEVLDCRSFRRLPQG-FGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLGNVRDA 628 (854)
Q Consensus 558 i~~--------L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~ 628 (854)
+.+ +.+|+.|++.+ . +..++.+ +..+++|+.|..- ......+.
T Consensus 89 F~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~---~n~i~~i~----------------------- 140 (329)
T 3sb4_A 89 FSNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIR---KKTAPNLL----------------------- 140 (329)
T ss_dssp TEEEETTEEEECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBC---CSSCCEEC-----------------------
T ss_pred hcccccccccccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcC---CCCccccc-----------------------
Confidence 556 89999999998 4 7888765 6778888877321 11000000
Q ss_pred hHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHH-----hhhCCCCCCCC-eEEEeccCCCCCCCCchhh----cccCc
Q 003037 629 DEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAI-----IEALQPPPNIE-SLRIEYHYIGISGWPSWIV----SLNKL 698 (854)
Q Consensus 629 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~~l~~~~~L~-~L~l~~~~~~~~~lp~~~~----~l~~L 698 (854)
...+..+.++..+.+... ..... ...+..+.+|+ .+.+ ... ..+|..+. ...++
T Consensus 141 ----~~aF~~~~~l~~l~~~~~--------~~~~~~~~i~~~~f~~~~~L~~~i~~-~~~---~~l~~~~~~~~~~~~~~ 204 (329)
T 3sb4_A 141 ----PEALADSVTAIFIPLGSS--------DAYRFKNRWEHFAFIEGEPLETTIQV-GAM---GKLEDEIMKAGLQPRDI 204 (329)
T ss_dssp ----TTSSCTTTCEEEECTTCT--------HHHHTSTTTTTSCEEESCCCEEEEEE-CTT---CCHHHHHHHTTCCGGGC
T ss_pred ----hhhhcCCCceEEecCcch--------hhhhccccccccccccccccceeEEe-cCC---CcHHHHHhhcccCcccc
Confidence 011222222222111110 00000 00112234555 4444 221 11333222 46778
Q ss_pred cEEEEecccCCCCCCCC-CCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCCCccceeecccccccccc
Q 003037 699 KKLVLYQFYLCDTMPPL-GKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLKQVLFYNICHWEEW 777 (854)
Q Consensus 699 ~~L~L~~~~~~~~l~~l-~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 777 (854)
..+.+.++-.......+ ..+++|+.|+|.+|. +..++...+ ..+++|+.|.+.+ ++..+
T Consensus 205 ~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF-----------------~~~~~L~~l~l~~--ni~~I 264 (329)
T 3sb4_A 205 NFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTF-----------------AQKKYLLKIKLPH--NLKTI 264 (329)
T ss_dssp SEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTT-----------------TTCTTCCEEECCT--TCCEE
T ss_pred ceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhh-----------------hCCCCCCEEECCc--cccee
Confidence 88888765221111111 137899999999886 888987644 2578999999877 25554
Q ss_pred ccCCCccccCCCccc-eeeecccccCcCCC-cCCCCCCCcCEEEEecC
Q 003037 778 DFGKGDSITIMPQLK-KLEFERCTELKSVP-EKLLRSTTLEELSIVEC 823 (854)
Q Consensus 778 ~~~~~~~~~~l~~L~-~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c 823 (854)
+. ..+..+++|+ .|.+.+ .++.++ ..+.++++|+.|++.+.
T Consensus 265 ~~---~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n 307 (329)
T 3sb4_A 265 GQ---RVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD 307 (329)
T ss_dssp CT---TTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS
T ss_pred hH---HHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC
Confidence 43 3677899999 999987 577775 67889999999999654
No 149
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.85 E-value=3.6e-08 Score=107.34 Aligned_cols=196 Identities=12% Similarity=0.149 Sum_probs=116.2
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAI 175 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 175 (854)
..+++||++.++.+...+.... ....+.|+|++|+||||+|+.+++.......+.. ..+... . ....+
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~---~~~~~~---~-~~~~~ 82 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGVC---D-NCREI 82 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS---SCCSSS---H-HHHHH
T ss_pred hhhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC---CCCccc---H-HHHHH
Confidence 3569999999999999986432 2346889999999999999999874211111100 000000 0 00011
Q ss_pred HHH-------hcCC-CCCCccHHHHHHHHHHH-hcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccHH-H
Q 003037 176 IEA-------LEGS-TPSLGELNSLLERIYAS-IARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKMT-V 245 (854)
Q Consensus 176 ~~~-------l~~~-~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v 245 (854)
... +... .....+...+...+... ..+++.++|+||++.-+......+...+.....+..+|++|.... +
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l 162 (373)
T 1jr3_A 83 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (373)
T ss_dssp HTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGS
T ss_pred hccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 000 0000 01112222222221110 135678999999976555677778887776666777777776443 1
Q ss_pred H-hhccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHHH
Q 003037 246 A-QMMQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTIG 307 (854)
Q Consensus 246 ~-~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~ 307 (854)
. ........+.+.+++.++..+++...+...+.... .+.+..|++.++|.|..+..+.
T Consensus 163 ~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~----~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 163 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE----PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHSSSCHHHHHHHH
T ss_pred cHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHCCCCHHHHHHHH
Confidence 1 11233468999999999999999876532111111 3456678999999998876654
No 150
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.85 E-value=7.6e-09 Score=99.44 Aligned_cols=100 Identities=22% Similarity=0.382 Sum_probs=82.5
Q ss_pred CCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccccccc-ccccCCCceeeecCCCCcccchh-
Q 003037 480 AKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKE-IKKLIHLRFLKLVWLDIEELPET- 557 (854)
Q Consensus 480 ~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~-i~~L~~L~~L~L~~~~i~~lP~~- 557 (854)
.++|++|.+.++. +..+.+..|.++++|++|++++|. +..+|.. ++.+.+|++|++++|.++.+|..
T Consensus 27 ~~~l~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~--------l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 95 (177)
T 2o6r_A 27 PSSATRLELESNK---LQSLPHGVFDKLTQLTKLSLSQNQ--------IQSLPDGVFDKLTKLTILYLHENKLQSLPNGV 95 (177)
T ss_dssp CTTCSEEECCSSC---CCCCCTTTTTTCTTCSEEECCSSC--------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCCcEEEeCCCc---ccEeCHHHhcCcccccEEECCCCc--------ceEeChhHccCCCccCEEECCCCCccccCHHH
Confidence 3689999999887 556556667889999999999998 7787755 58899999999999999988875
Q ss_pred hhcCCCCcEEeecCccccccccccc-ccCCCCccc
Q 003037 558 CCELFNVQTLEVLDCRSFRRLPQGF-GKLVNLRNL 591 (854)
Q Consensus 558 i~~L~~L~~L~l~~~~~l~~lp~~i-~~L~~L~~L 591 (854)
+.++++|++|++++|. +..+|..+ ..+++|++|
T Consensus 96 ~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L 129 (177)
T 2o6r_A 96 FDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKI 129 (177)
T ss_dssp TTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEE
T ss_pred hhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEE
Confidence 5889999999999997 78888764 667777777
No 151
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.84 E-value=7.8e-09 Score=100.77 Aligned_cols=105 Identities=24% Similarity=0.218 Sum_probs=93.4
Q ss_pred cCceEEEEeeeCCCC-CCcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccc-cc
Q 003037 458 VEKVRHSMLKLGYDS-FPDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPK-EI 535 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~-~i 535 (854)
+.+++.+.+..+... +|..+..+++|++|.+.+|. +..+.+..|.++++|++|+|++|. +..+|. .+
T Consensus 30 ~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~---i~~i~~~~f~~l~~L~~L~Ls~N~--------l~~i~~~~f 98 (193)
T 2wfh_A 30 PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR---ISTLSNQSFSNMTQLLTLILSYNR--------LRCIPPRTF 98 (193)
T ss_dssp CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSC--------CCBCCTTTT
T ss_pred CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc---CCEeCHhHccCCCCCCEEECCCCc--------cCEeCHHHh
Confidence 568999999988766 66788899999999999998 666667789999999999999999 777764 68
Q ss_pred cccCCCceeeecCCCCcccchh-hhcCCCCcEEeecCcc
Q 003037 536 KKLIHLRFLKLVWLDIEELPET-CCELFNVQTLEVLDCR 573 (854)
Q Consensus 536 ~~L~~L~~L~L~~~~i~~lP~~-i~~L~~L~~L~l~~~~ 573 (854)
..+.+|++|+|++|.|+.+|.. +..+++|++|++++|.
T Consensus 99 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 99 DGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 9999999999999999999974 7899999999999987
No 152
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.84 E-value=5.3e-11 Score=117.03 Aligned_cols=81 Identities=23% Similarity=0.275 Sum_probs=61.0
Q ss_pred hhhhhcCCCcccEEEecCCCCccccccccccccccccccCCCceeeecCCCCcccchhhhcCCCCcEEeecCcccccccc
Q 003037 500 LPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIEELPETCCELFNVQTLEVLDCRSFRRLP 579 (854)
Q Consensus 500 l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp 579 (854)
+|..+..+++|++|++++|. +..+| .++++.+|++|++++|.++.+|..+..+++|++|++++|. +..+|
T Consensus 40 l~~~~~~l~~L~~L~ls~n~--------l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~ 109 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNN--------IEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS 109 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEE--------ESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH
T ss_pred hhHHHhcCCCCCEEECCCCC--------Ccccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC
Confidence 45567778888888888877 77777 7777888888888888887888777777788888888876 66666
Q ss_pred cccccCCCCccc
Q 003037 580 QGFGKLVNLRNL 591 (854)
Q Consensus 580 ~~i~~L~~L~~L 591 (854)
.++.+++|++|
T Consensus 110 -~~~~l~~L~~L 120 (198)
T 1ds9_A 110 -GIEKLVNLRVL 120 (198)
T ss_dssp -HHHHHHHSSEE
T ss_pred -ccccCCCCCEE
Confidence 46666666666
No 153
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.79 E-value=3.3e-08 Score=104.96 Aligned_cols=184 Identities=13% Similarity=0.083 Sum_probs=113.6
Q ss_pred cCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccC-eeEEEEeCCccCHHHHHH
Q 003037 95 DVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFE-KRIWVCVSDPFDEFRIAK 173 (854)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~ 173 (854)
.-.+++|+++.++.+..++... ..+.+.|+|++|+|||++|+.+++... ...+. ..+.++.+.....
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~----- 82 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGI----- 82 (319)
T ss_dssp SGGGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCT-----
T ss_pred CHHHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccCh-----
Confidence 3457999999999999888642 233388999999999999999987411 11111 2233343331110
Q ss_pred HHHHHhcCCCCCCccHHHHHHHHHHH--h-cCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccHH-HHh-h
Q 003037 174 AIIEALEGSTPSLGELNSLLERIYAS--I-ARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKMT-VAQ-M 248 (854)
Q Consensus 174 ~i~~~l~~~~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~-~ 248 (854)
............. + .+++.++|+|++..-.......+...+.....++++|+||.... +.. .
T Consensus 83 -------------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l 149 (319)
T 2chq_A 83 -------------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPI 149 (319)
T ss_dssp -------------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHH
T ss_pred -------------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHH
Confidence 0111111111110 1 25688999999965544555666666666566778888876543 111 1
Q ss_pred ccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHHH
Q 003037 249 MQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTIG 307 (854)
Q Consensus 249 ~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~ 307 (854)
......+.+.+++.++..+++...+...+.... .+....|++.++|.+..+....
T Consensus 150 ~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~----~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 150 QSRCAVFRFKPVPKEAMKKRLLEICEKEGVKIT----EDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp HTTCEEEECCCCCHHHHHHHHHHHHHTTCCCBC----HHHHHHHHHTTTTCHHHHHHHH
T ss_pred HhhCeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 223458999999999999999877643222112 3456678889999998655443
No 154
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.77 E-value=1.3e-08 Score=99.14 Aligned_cols=105 Identities=15% Similarity=0.147 Sum_probs=91.3
Q ss_pred cCceEEEEeeeCCCC-CCc--ccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccc-
Q 003037 458 VEKVRHSMLKLGYDS-FPD--SIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPK- 533 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~-~~~--~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~- 533 (854)
+..++.+.+..+... .+. .+..+++|++|.+.+|. +.++.|..|.++++|++|+|++|. +..+|.
T Consensus 28 ~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls~N~--------l~~~~~~ 96 (192)
T 1w8a_A 28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ---LTGIEPNAFEGASHIQELQLGENK--------IKEISNK 96 (192)
T ss_dssp CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC---CCCBCTTTTTTCTTCCEEECCSCC--------CCEECSS
T ss_pred CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCC---CCCcCHhHcCCcccCCEEECCCCc--------CCccCHH
Confidence 458899999988766 333 37899999999999998 667678889999999999999999 777765
Q ss_pred cccccCCCceeeecCCCCccc-chhhhcCCCCcEEeecCcc
Q 003037 534 EIKKLIHLRFLKLVWLDIEEL-PETCCELFNVQTLEVLDCR 573 (854)
Q Consensus 534 ~i~~L~~L~~L~L~~~~i~~l-P~~i~~L~~L~~L~l~~~~ 573 (854)
.+.++.+|++|+|++|.++.+ |..+..+++|++|++++|.
T Consensus 97 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 97 MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp SSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred HhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 488999999999999999966 6789999999999999998
No 155
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.77 E-value=1.2e-08 Score=97.29 Aligned_cols=82 Identities=21% Similarity=0.313 Sum_probs=61.5
Q ss_pred CCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccccccc-ccccCCCceeeecCCCCcccchh-h
Q 003037 481 KKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKE-IKKLIHLRFLKLVWLDIEELPET-C 558 (854)
Q Consensus 481 ~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~-i~~L~~L~~L~L~~~~i~~lP~~-i 558 (854)
++|++|.+.+|. +..+.|..|.++++|++|+|++|. +..+|.. +.++.+|++|+|++|.|+.+|.. +
T Consensus 30 ~~l~~L~L~~N~---i~~~~~~~~~~l~~L~~L~Ls~N~--------l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~ 98 (170)
T 3g39_A 30 TTTQVLYLYDNQ---ITKLEPGVFDRLTQLTRLDLDNNQ--------LTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAF 98 (170)
T ss_dssp TTCSEEECCSSC---CCCCCTTTTTTCTTCSEEECCSSC--------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCcEEEcCCCc---CCccChhhhcCcccCCEEECCCCC--------cCccChhhccCCCCCCEEECCCCccCEeCHHHh
Confidence 677788887777 555556667778888888888877 7777654 46778888888888888777764 6
Q ss_pred hcCCCCcEEeecCcc
Q 003037 559 CELFNVQTLEVLDCR 573 (854)
Q Consensus 559 ~~L~~L~~L~l~~~~ 573 (854)
.++++|++|++++|.
T Consensus 99 ~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 99 DNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred cCCCCCCEEEeCCCC
Confidence 777888888888776
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.71 E-value=4e-07 Score=99.30 Aligned_cols=272 Identities=14% Similarity=0.178 Sum_probs=154.8
Q ss_pred CCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccc-cccccCCCceeeecCCCCcccch-hh
Q 003037 481 KKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPK-EIKKLIHLRFLKLVWLDIEELPE-TC 558 (854)
Q Consensus 481 ~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~-~i~~L~~L~~L~L~~~~i~~lP~-~i 558 (854)
..+.++.+... +..+....|.++ +|+.+.|..+ +..++. .|.+ .+|+.+.+.. .++.++. .+
T Consensus 113 ~~l~~i~ip~~----i~~I~~~aF~~~-~L~~i~l~~~---------i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF 176 (401)
T 4fdw_A 113 KGYNEIILPNS----VKSIPKDAFRNS-QIAKVVLNEG---------LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIF 176 (401)
T ss_dssp SSCSEEECCTT----CCEECTTTTTTC-CCSEEECCTT---------CCEECTTTTTT-CCCCEEECCT-TCCEECSSTT
T ss_pred CCccEEEECCc----cCEehHhhcccC-CccEEEeCCC---------ccEECHHhcCC-CCceEEEeCC-CccEehHHHh
Confidence 44555554432 233334456664 5777777543 444443 3333 3577777765 4666653 46
Q ss_pred hcCCCCcEEeecCcccccccccccccCCCCcccCceeecCCCCCCcccccccccCCceeEEecccCCCChhHHHHhhccC
Q 003037 559 CELFNVQTLEVLDCRSFRRLPQGFGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLGNVRDADEAKSAELEK 638 (854)
Q Consensus 559 ~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~ 638 (854)
.++.+|+.+++.+|. +..+|.+.....+|+.+.. .. +++. .....+.+
T Consensus 177 ~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~l---p~----------~l~~------------------I~~~aF~~ 224 (401)
T 4fdw_A 177 YYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLL---PV----------TLKE------------------IGSQAFLK 224 (401)
T ss_dssp TTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEEC---CT----------TCCE------------------ECTTTTTT
T ss_pred hCcccCCeeecCCCc-ceEechhhEeecccCEEEe---CC----------chhe------------------ehhhHhhC
Confidence 677777777777666 6677665544455554411 00 0010 00123555
Q ss_pred CCCCCcEEEEecCCCCCCCcchHHHh-hhCCCCCCCCeEEEeccCCCCCCCCchhhcccCccEEEEecccCC----CCCC
Q 003037 639 KKNLLDLVLSFDGGQRIGDVNDKAII-EALQPPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLC----DTMP 713 (854)
Q Consensus 639 ~~~L~~L~l~~~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~----~~l~ 713 (854)
+++|+.+.+..+ ...+. ..+.. .+|+.+.+ .+....- -+..+..|++|+.+.+.++... ..++
T Consensus 225 ~~~L~~l~l~~~---------l~~I~~~aF~~-~~L~~i~l-p~~i~~I-~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~ 292 (401)
T 4fdw_A 225 TSQLKTIEIPEN---------VSTIGQEAFRE-SGITTVKL-PNGVTNI-ASRAFYYCPELAEVTTYGSTFNDDPEAMIH 292 (401)
T ss_dssp CTTCCCEECCTT---------CCEECTTTTTT-CCCSEEEE-ETTCCEE-CTTTTTTCTTCCEEEEESSCCCCCTTCEEC
T ss_pred CCCCCEEecCCC---------ccCcccccccc-CCccEEEe-CCCccEE-ChhHhhCCCCCCEEEeCCccccCCcccEEC
Confidence 666666666432 00111 12222 57888888 4432221 1344668899999999877543 1233
Q ss_pred --CCCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCCCccceeeccccccccccccCCCccccCCCcc
Q 003037 714 --PLGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLKQVLFYNICHWEEWDFGKGDSITIMPQL 791 (854)
Q Consensus 714 --~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L 791 (854)
.+..+++|+.+.|.+ .+..++...+ .++++|+.+.+.. ++..+.. ..+..+ +|
T Consensus 293 ~~aF~~c~~L~~l~l~~--~i~~I~~~aF-----------------~~c~~L~~l~lp~--~l~~I~~---~aF~~~-~L 347 (401)
T 4fdw_A 293 PYCLEGCPKLARFEIPE--SIRILGQGLL-----------------GGNRKVTQLTIPA--NVTQINF---SAFNNT-GI 347 (401)
T ss_dssp TTTTTTCTTCCEECCCT--TCCEECTTTT-----------------TTCCSCCEEEECT--TCCEECT---TSSSSS-CC
T ss_pred HHHhhCCccCCeEEeCC--ceEEEhhhhh-----------------cCCCCccEEEECc--cccEEcH---HhCCCC-CC
Confidence 377899999999984 3778876543 2567888888854 3444432 356677 99
Q ss_pred ceeeecccccCcCCC-cCCCCC-CCcCEEEEecCcchHHhhccCCCCCCCCcC
Q 003037 792 KKLEFERCTELKSVP-EKLLRS-TTLEELSIVECPILVERYKKYTGQDWSLVS 842 (854)
Q Consensus 792 ~~L~l~~c~~l~~lp-~~l~~l-~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~ 842 (854)
+.|.+.++ .+..++ ..+..+ ..++.|++-.-. .+.++.. ..|...+
T Consensus 348 ~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~--~~~y~~a--~~W~~f~ 395 (401)
T 4fdw_A 348 KEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAES--VEKYKNA--NGWRDFT 395 (401)
T ss_dssp CEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGGG--HHHHHHS--TTGGGGG
T ss_pred CEEEEcCC-CCcccccccccCCCCCccEEEeCHHH--HHHhhhc--cchhhhh
Confidence 99999987 445554 445556 378888886532 3334332 3575543
No 157
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.71 E-value=2e-08 Score=95.96 Aligned_cols=94 Identities=18% Similarity=0.313 Sum_probs=79.2
Q ss_pred eEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccc-cccccccCCCceeeecCCCCcccchh-hhcC
Q 003037 484 RSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEI-PKEIKKLIHLRFLKLVWLDIEELPET-CCEL 561 (854)
Q Consensus 484 r~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~l-P~~i~~L~~L~~L~L~~~~i~~lP~~-i~~L 561 (854)
+.+.+.++. +.. +|..+ .++|++|+|++|. +..+ |..++++.+|++|+|++|.|+.+|.. +.++
T Consensus 15 ~~l~~~~n~---l~~-iP~~~--~~~L~~L~Ls~N~--------l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l 80 (174)
T 2r9u_A 15 TLVNCQNIR---LAS-VPAGI--PTDKQRLWLNNNQ--------ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKL 80 (174)
T ss_dssp SEEECCSSC---CSS-CCSCC--CTTCSEEECCSSC--------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cEEEeCCCC---CCc-cCCCc--CCCCcEEEeCCCC--------ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCc
Confidence 677888776 444 45434 3899999999999 7777 66789999999999999999999986 4899
Q ss_pred CCCcEEeecCcccccccccc-cccCCCCcccC
Q 003037 562 FNVQTLEVLDCRSFRRLPQG-FGKLVNLRNLS 592 (854)
Q Consensus 562 ~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~ 592 (854)
++|++|++++|. +..+|.+ +..+++|++|.
T Consensus 81 ~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 81 TQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCSEEE
T ss_pred chhhEEECCCCc-cceeCHHHhccccCCCEEE
Confidence 999999999998 8889886 78888888883
No 158
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.70 E-value=3.4e-08 Score=94.85 Aligned_cols=105 Identities=18% Similarity=0.214 Sum_probs=90.0
Q ss_pred cCceEEEEeeeCCCC-CCc-ccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccccccc-
Q 003037 458 VEKVRHSMLKLGYDS-FPD-SIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKE- 534 (854)
Q Consensus 458 ~~~~r~l~l~~~~~~-~~~-~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~- 534 (854)
+.+++++.+.++... .+. .+..+++|++|.+.+|. +..+.+..|..+++|++|++++|. +..+|..
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~N~--------l~~~~~~~ 95 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ---IQSLPDGVFDKLTKLTILYLHENK--------LQSLPNGV 95 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSC--------CCCCCTTT
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc---ceEeChhHccCCCccCEEECCCCC--------ccccCHHH
Confidence 568899999988765 333 45788999999999998 666566668999999999999999 8888765
Q ss_pred ccccCCCceeeecCCCCcccchh-hhcCCCCcEEeecCcc
Q 003037 535 IKKLIHLRFLKLVWLDIEELPET-CCELFNVQTLEVLDCR 573 (854)
Q Consensus 535 i~~L~~L~~L~L~~~~i~~lP~~-i~~L~~L~~L~l~~~~ 573 (854)
++++.+|++|++++|.++.+|.. +.++++|++|++++|.
T Consensus 96 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 96 FDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 68999999999999999999986 4789999999999998
No 159
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.67 E-value=1.2e-07 Score=92.31 Aligned_cols=152 Identities=16% Similarity=0.185 Sum_probs=84.4
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhcccc---cc--ccCeeEEEEeCCccCHHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDV---IN--HFEKRIWVCVSDPFDEFR 170 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~--~f~~~~wv~~s~~~~~~~ 170 (854)
...++||+++++++.+.+... ..+.+.|+|++|+|||++|+.+++.... .. .....+++.++.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 88 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------ 88 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------
T ss_pred ccccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------
Confidence 457999999999999998742 3456789999999999999999874211 00 112333443211
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHh--cCCeEEEEEecCCCcC--------hhhHHHHHHhhcCCCCCcEEEEec
Q 003037 171 IAKAIIEALEGSTPSLGELNSLLERIYASI--ARKKFLLVLDDVWTED--------YNKWETFQRCLKNGLRGSKILVTT 240 (854)
Q Consensus 171 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~ilvTt 240 (854)
+ +... ............+.+.+ .+++.+|||||++.-. ......+...+.. .+..+|.||
T Consensus 89 ~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~ 158 (195)
T 1jbk_A 89 L-------VAGA-KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGAT 158 (195)
T ss_dssp H-------HTTT-CSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEE
T ss_pred H-------hccC-CccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEeC
Confidence 1 0000 00011111122222222 3568899999995421 1123334443433 244567776
Q ss_pred ccHHHHh-------hccCcceEecCCCCHHHHHHHH
Q 003037 241 RKMTVAQ-------MMQSNDVILIRELSEQACWSLF 269 (854)
Q Consensus 241 R~~~v~~-------~~~~~~~~~l~~L~~~e~~~l~ 269 (854)
....... .......+.+.+++.++..+++
T Consensus 159 ~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 159 TLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp CHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred CHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 6554221 1122336889999988876654
No 160
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.67 E-value=8.4e-10 Score=108.36 Aligned_cols=102 Identities=18% Similarity=0.204 Sum_probs=70.0
Q ss_pred cccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccccCCCceeeecCCCCccc
Q 003037 475 DSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIEEL 554 (854)
Q Consensus 475 ~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~~l 554 (854)
..+..+++|++|.+.+|. +.. +| .+.++++|++|++++|. +..+|..++.+++|++|++++|.++.+
T Consensus 42 ~~~~~l~~L~~L~ls~n~---l~~-l~-~~~~l~~L~~L~l~~n~--------l~~l~~~~~~~~~L~~L~L~~N~l~~l 108 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNN---IEK-IS-SLSGMENLRILSLGRNL--------IKKIENLDAVADTLEELWISYNQIASL 108 (198)
T ss_dssp HHHHHTTTCSEEECSEEE---ESC-CC-CHHHHTTCCEEEEEEEE--------ECSCSSHHHHHHHCSEEEEEEEECCCH
T ss_pred HHHhcCCCCCEEECCCCC---Ccc-cc-ccccCCCCCEEECCCCC--------cccccchhhcCCcCCEEECcCCcCCcC
Confidence 356667777777777766 444 44 56677777777777776 667777666677777777777777776
Q ss_pred chhhhcCCCCcEEeecCccccccccc--ccccCCCCccc
Q 003037 555 PETCCELFNVQTLEVLDCRSFRRLPQ--GFGKLVNLRNL 591 (854)
Q Consensus 555 P~~i~~L~~L~~L~l~~~~~l~~lp~--~i~~L~~L~~L 591 (854)
| .++++++|++|++++|. +..+|. .+..+++|++|
T Consensus 109 ~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L 145 (198)
T 1ds9_A 109 S-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDL 145 (198)
T ss_dssp H-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEE
T ss_pred C-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEE
Confidence 6 56777777777777776 665554 45666666666
No 161
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.65 E-value=3.6e-08 Score=93.82 Aligned_cols=95 Identities=20% Similarity=0.297 Sum_probs=79.0
Q ss_pred ceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccc-cccccccCCCceeeecCCCCcccchh-hhc
Q 003037 483 LRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEI-PKEIKKLIHLRFLKLVWLDIEELPET-CCE 560 (854)
Q Consensus 483 Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~l-P~~i~~L~~L~~L~L~~~~i~~lP~~-i~~ 560 (854)
.+++++.++. +.. +|..+ .++|++|+|++|. +..+ |..++++.+|++|+|++|.|+.+|.. +.+
T Consensus 11 ~~~l~~s~n~---l~~-ip~~~--~~~l~~L~L~~N~--------i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~ 76 (170)
T 3g39_A 11 GTTVDCSGKS---LAS-VPTGI--PTTTQVLYLYDNQ--------ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK 76 (170)
T ss_dssp TTEEECTTSC---CSS-CCSCC--CTTCSEEECCSSC--------CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred CCEEEeCCCC---cCc-cCccC--CCCCcEEEcCCCc--------CCccChhhhcCcccCCEEECCCCCcCccChhhccC
Confidence 4677888776 555 45433 4889999999999 8887 66789999999999999999999876 589
Q ss_pred CCCCcEEeecCcccccccccc-cccCCCCcccC
Q 003037 561 LFNVQTLEVLDCRSFRRLPQG-FGKLVNLRNLS 592 (854)
Q Consensus 561 L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~ 592 (854)
+++|++|++++|. +..+|.+ +..+++|++|.
T Consensus 77 l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 77 LTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEE
Confidence 9999999999998 8888875 77888888873
No 162
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.64 E-value=1.4e-06 Score=93.13 Aligned_cols=180 Identities=12% Similarity=0.091 Sum_probs=109.1
Q ss_pred cCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHH
Q 003037 95 DVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKA 174 (854)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 174 (854)
.-.+++|++..++.+..++...... ......|.|+|++|+|||++|+.+++. ....| +.++.+.....
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~-~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~~---~~~~~~~~~~~------ 94 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKR-NECLDHILFSGPAGLGKTTLANIISYE--MSANI---KTTAAPMIEKS------ 94 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHT-TSCCCCEEEECSTTSSHHHHHHHHHHH--TTCCE---EEEEGGGCCSH------
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhc-CCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCe---EEecchhccch------
Confidence 4567999999999999888754210 123456889999999999999999874 22222 23332221111
Q ss_pred HHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCC------------------CCcEE
Q 003037 175 IIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGL------------------RGSKI 236 (854)
Q Consensus 175 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~i 236 (854)
......+.. ..+..+|+||++..........+...+.... ++.++
T Consensus 95 ---------------~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T 3pfi_A 95 ---------------GDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL 157 (338)
T ss_dssp ---------------HHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred ---------------hHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence 111111111 2456799999996655555566666665432 12456
Q ss_pred EEecccHH-HHhhc-c-CcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHHH
Q 003037 237 LVTTRKMT-VAQMM-Q-SNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTIG 307 (854)
Q Consensus 237 lvTtR~~~-v~~~~-~-~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~ 307 (854)
|.||.... +...+ . ....+.+.+++.++...++...+..... ..-.+..+.|++.+.|+|-.+..+.
T Consensus 158 i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK----TCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----EECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 65555422 11111 1 1358999999999999999877642221 1123456678889999996555443
No 163
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.60 E-value=1e-07 Score=96.54 Aligned_cols=175 Identities=13% Similarity=0.062 Sum_probs=101.3
Q ss_pred CCccccch---hHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHH
Q 003037 96 VSEVRGRD---EEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIA 172 (854)
Q Consensus 96 ~~~~vGr~---~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 172 (854)
-.+|+|++ +.++.+..+... +..+.+.|+|++|+||||||+.+++. .......++|+.++...+.
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~---- 94 (242)
T 3bos_A 27 FTSYYPAAGNDELIGALKSAASG------DGVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI---- 94 (242)
T ss_dssp TTTSCC--CCHHHHHHHHHHHHT------CSCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS----
T ss_pred hhhccCCCCCHHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH----
Confidence 35677743 555666666542 23567889999999999999999884 3222335567766442110
Q ss_pred HHHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhh--HHHHHHhhcCC-CCC-cEEEEecccHH----
Q 003037 173 KAIIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTEDYNK--WETFQRCLKNG-LRG-SKILVTTRKMT---- 244 (854)
Q Consensus 173 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~--~~~l~~~l~~~-~~g-s~ilvTtR~~~---- 244 (854)
+.+. + +.+ .++.+||+||++...... .+.+...+... ..+ .++|+||+...
T Consensus 95 --~~~~-----------------~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~ 153 (242)
T 3bos_A 95 --STAL-----------------L-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAG 153 (242)
T ss_dssp --CGGG-----------------G-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTT
T ss_pred --HHHH-----------------H-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHH
Confidence 0000 0 011 456799999996533222 33344433211 122 24777776322
Q ss_pred -----HHhhccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHHH
Q 003037 245 -----VAQMMQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTIG 307 (854)
Q Consensus 245 -----v~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~ 307 (854)
+...+.....+.+.+++.++..+++...+...+... ..+..+.|++.++|.+-.+..+.
T Consensus 154 ~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 154 FVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQL----PEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp CCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCC----CHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHccCCHHHHHHHH
Confidence 112222236899999999999999988764222111 13456678889999987765543
No 164
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.59 E-value=6.1e-07 Score=96.65 Aligned_cols=196 Identities=11% Similarity=0.076 Sum_probs=115.4
Q ss_pred cCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccC-eeEEEEeCCccCHHHHHH
Q 003037 95 DVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFE-KRIWVCVSDPFDEFRIAK 173 (854)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~ 173 (854)
.-..++|+++.++.+..++.... ...+.|+|++|+||||+|+.+++.......+. .++.+..+....... +.
T Consensus 35 ~~~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~ 107 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISI-VR 107 (353)
T ss_dssp STTTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHH-HT
T ss_pred CHHHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHH-HH
Confidence 34679999999999999987432 22388999999999999999988421111121 233344333222222 22
Q ss_pred HHHHHhcCC-CCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccHH-HHhh-cc
Q 003037 174 AIIEALEGS-TPSLGELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKMT-VAQM-MQ 250 (854)
Q Consensus 174 ~i~~~l~~~-~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~-~~ 250 (854)
+.+...... ....... .....-.+++-++++|++..-.......+...+.......++|++|.... +... ..
T Consensus 108 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~s 182 (353)
T 1sxj_D 108 EKVKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLAS 182 (353)
T ss_dssp THHHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH
T ss_pred HHHHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhc
Confidence 222221111 0000000 00011123567999999865555566677777766656677877775432 1111 12
Q ss_pred CcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHH
Q 003037 251 SNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTI 306 (854)
Q Consensus 251 ~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~ 306 (854)
....+.+.+++.++....+...+...+.... .+..+.|++.++|.|..+..+
T Consensus 183 R~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~----~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 183 QCSKFRFKALDASNAIDRLRFISEQENVKCD----DGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp HSEEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHHHHHHHHTSSCHHHHHHH
T ss_pred cCceEEeCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 2347899999999999999887643221112 345677889999999865443
No 165
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.54 E-value=1.4e-06 Score=94.95 Aligned_cols=239 Identities=11% Similarity=0.114 Sum_probs=141.6
Q ss_pred ccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccccc-ccccccCCCceeeecCCCCccc
Q 003037 476 SIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIP-KEIKKLIHLRFLKLVWLDIEEL 554 (854)
Q Consensus 476 ~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP-~~i~~L~~L~~L~L~~~~i~~l 554 (854)
.|.+ .+|+++.+..+ +..+....|.++ +|+.+.+.. . +..++ ..+.++.+|+.+++..|.++.+
T Consensus 131 aF~~-~~L~~i~l~~~----i~~I~~~aF~~~-~L~~i~lp~-~--------l~~I~~~aF~~c~~L~~l~l~~n~l~~I 195 (401)
T 4fdw_A 131 AFRN-SQIAKVVLNEG----LKSIGDMAFFNS-TVQEIVFPS-T--------LEQLKEDIFYYCYNLKKADLSKTKITKL 195 (401)
T ss_dssp TTTT-CCCSEEECCTT----CCEECTTTTTTC-CCCEEECCT-T--------CCEECSSTTTTCTTCCEEECTTSCCSEE
T ss_pred hccc-CCccEEEeCCC----ccEECHHhcCCC-CceEEEeCC-C--------ccEehHHHhhCcccCCeeecCCCcceEe
Confidence 3444 47999987654 344445667775 699999986 3 66665 5678999999999999999999
Q ss_pred chhhhcCCCCcEEeecCcccccccccc-cccCCCCcccCceeecCCCCCCcccccccccCCceeEEecccCCCChhHHHH
Q 003037 555 PETCCELFNVQTLEVLDCRSFRRLPQG-FGKLVNLRNLSKFIVSRSGGSKLEDLRQLKHLRGSLKIQGLGNVRDADEAKS 633 (854)
Q Consensus 555 P~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~ 633 (854)
|.......+|+.+.+..+ +..++.. +..+++|+.+.. .. +++.+. .
T Consensus 196 ~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l---~~----------~l~~I~------------------~ 242 (401)
T 4fdw_A 196 PASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEI---PE----------NVSTIG------------------Q 242 (401)
T ss_dssp CTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEEC---CT----------TCCEEC------------------T
T ss_pred chhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEec---CC----------CccCcc------------------c
Confidence 987666789999999853 6677654 556777776621 10 011000 0
Q ss_pred hhccCCCCCCcEEEEecCCCCCCCcchHHH-hhhCCCCCCCCeEEEeccCCCC----CCC-CchhhcccCccEEEEeccc
Q 003037 634 AELEKKKNLLDLVLSFDGGQRIGDVNDKAI-IEALQPPPNIESLRIEYHYIGI----SGW-PSWIVSLNKLKKLVLYQFY 707 (854)
Q Consensus 634 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~----~~l-p~~~~~l~~L~~L~L~~~~ 707 (854)
..+.+ .+|+.+.+..+ ...+ ...+..+++|+.+.+ .++... ..+ +..+..|++|+.+.|.++
T Consensus 243 ~aF~~-~~L~~i~lp~~---------i~~I~~~aF~~c~~L~~l~l-~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~- 310 (401)
T 4fdw_A 243 EAFRE-SGITTVKLPNG---------VTNIASRAFYYCPELAEVTT-YGSTFNDDPEAMIHPYCLEGCPKLARFEIPES- 310 (401)
T ss_dssp TTTTT-CCCSEEEEETT---------CCEECTTTTTTCTTCCEEEE-ESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-
T ss_pred ccccc-CCccEEEeCCC---------ccEEChhHhhCCCCCCEEEe-CCccccCCcccEECHHHhhCCccCCeEEeCCc-
Confidence 12222 45666666432 0111 223455667777777 333221 002 234557778888887743
Q ss_pred CCCCCC--CCCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCCCccceeeccccccccccccCCCccc
Q 003037 708 LCDTMP--PLGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLKQVLFYNICHWEEWDFGKGDSI 785 (854)
Q Consensus 708 ~~~~l~--~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 785 (854)
...++ .+..+++|+.|.|.++ +..++...+ ..+ +|+.+.+.+. .+..+. ...+
T Consensus 311 -i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF-----------------~~~-~L~~l~l~~n-~~~~l~---~~~F 365 (401)
T 4fdw_A 311 -IRILGQGLLGGNRKVTQLTIPAN--VTQINFSAF-----------------NNT-GIKEVKVEGT-TPPQVF---EKVW 365 (401)
T ss_dssp -CCEECTTTTTTCCSCCEEEECTT--CCEECTTSS-----------------SSS-CCCEEEECCS-SCCBCC---CSSC
T ss_pred -eEEEhhhhhcCCCCccEEEECcc--ccEEcHHhC-----------------CCC-CCCEEEEcCC-CCcccc---cccc
Confidence 33333 2667788888888553 666765433 135 7777777662 222222 2233
Q ss_pred cCCC-ccceeeeccc
Q 003037 786 TIMP-QLKKLEFERC 799 (854)
Q Consensus 786 ~~l~-~L~~L~l~~c 799 (854)
..++ +++.|.+..+
T Consensus 366 ~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 366 YGFPDDITVIRVPAE 380 (401)
T ss_dssp CCSCTTCCEEEECGG
T ss_pred cCCCCCccEEEeCHH
Confidence 3453 5667766543
No 166
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.46 E-value=7.6e-07 Score=95.93 Aligned_cols=197 Identities=12% Similarity=0.120 Sum_probs=109.9
Q ss_pred CCccccchhHHHHHHHHh-cccccccCCCeEEEEEEecCCCcHHHHHHHHHhcc-c-ccc--ccCe--------------
Q 003037 96 VSEVRGRDEEKNTLKSKL-LCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNN-D-VIN--HFEK-------------- 156 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~-~-~~~--~f~~-------------- 156 (854)
-.+++|+++.++.+..++ .... ... +.|+|+.|+||||+|+.++... . ..+ .++.
T Consensus 13 ~~~~vg~~~~~~~l~~~~~~~~~-----~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~ 86 (354)
T 1sxj_E 13 LNALSHNEELTNFLKSLSDQPRD-----LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELN 86 (354)
T ss_dssp GGGCCSCHHHHHHHHTTTTCTTC-----CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------C
T ss_pred HHHhcCCHHHHHHHHHHHhhCCC-----CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceee
Confidence 467999999999998887 4321 223 8999999999999999887731 0 000 0000
Q ss_pred ------eEEEEeCCcc-CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcC
Q 003037 157 ------RIWVCVSDPF-DEFRIAKAIIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKN 229 (854)
Q Consensus 157 ------~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~ 229 (854)
.+.+..+... ......++++..+..... ..... .+ ..+.+++-++|+|++..-+......+...+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~ 160 (354)
T 1sxj_E 87 VVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ----VDFQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEK 160 (354)
T ss_dssp CEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHH
T ss_pred eecccceEEecHhhcCCcchHHHHHHHHHHHHhcc----ccccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHh
Confidence 1111111100 000012223332211110 00000 00 00234677999999977666667777777766
Q ss_pred CCCCcEEEEecccHH-HHh-hccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHHH
Q 003037 230 GLRGSKILVTTRKMT-VAQ-MMQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTIG 307 (854)
Q Consensus 230 ~~~gs~ilvTtR~~~-v~~-~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~ 307 (854)
...+..+|++|.+.. +.. .......+++.+++.++..+.+...+...+..... .+.+..|++.++|.+-.+..+.
T Consensus 161 ~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 161 YSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET---KDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp STTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC---SHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHHcCCCHHHHHHHH
Confidence 556778888776532 211 12334689999999999999998766321111110 2345678888999987665543
No 167
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.45 E-value=2.7e-06 Score=93.65 Aligned_cols=180 Identities=18% Similarity=0.191 Sum_probs=104.3
Q ss_pred cCCccccchhHH---HHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHH
Q 003037 95 DVSEVRGRDEEK---NTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRI 171 (854)
Q Consensus 95 ~~~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~ 171 (854)
.-.++||.+..+ ..|...+.. +....+.|+|++|+||||+|+.+++. ....| +.++........
T Consensus 24 ~l~~ivGq~~~~~~~~~L~~~i~~------~~~~~vLL~GppGtGKTtlAr~ia~~--~~~~f-----~~l~a~~~~~~~ 90 (447)
T 3pvs_A 24 NLAQYIGQQHLLAAGKPLPRAIEA------GHLHSMILWGPPGTGKTTLAEVIARY--ANADV-----ERISAVTSGVKE 90 (447)
T ss_dssp STTTCCSCHHHHSTTSHHHHHHHH------TCCCEEEEECSTTSSHHHHHHHHHHH--TTCEE-----EEEETTTCCHHH
T ss_pred CHHHhCCcHHHHhchHHHHHHHHc------CCCcEEEEECCCCCcHHHHHHHHHHH--hCCCe-----EEEEeccCCHHH
Confidence 346799999888 677777763 24567889999999999999999984 32222 222221111111
Q ss_pred HHHHHHHhcCCCCCCccHHHHHHHHH-HHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEE-ecccHH--H-H
Q 003037 172 AKAIIEALEGSTPSLGELNSLLERIY-ASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILV-TTRKMT--V-A 246 (854)
Q Consensus 172 ~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~--v-~ 246 (854)
++.++ .... ....+++.+|+||++..-.....+.+...+..+ ...+|. ||.+.. + .
T Consensus 91 ir~~~-----------------~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~ 151 (447)
T 3pvs_A 91 IREAI-----------------ERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNS 151 (447)
T ss_dssp HHHHH-----------------HHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCH
T ss_pred HHHHH-----------------HHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCH
Confidence 11111 1111 112467889999999765545555666666652 234443 444432 1 1
Q ss_pred hhccCcceEecCCCCHHHHHHHHHHHhcCCCCC---CCchHHHHHHHHHHhhcCCCcHHHHHH
Q 003037 247 QMMQSNDVILIRELSEQACWSLFEQLAFFGRPR---SECEQLIEIGRKIVGKCKGLPLAAKTI 306 (854)
Q Consensus 247 ~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~---~~~~~~~~~~~~I~~~~~GlPLai~~~ 306 (854)
........+.+.+++.++...++.+.+...... .......+..+.|++.++|.+-.+..+
T Consensus 152 aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 152 ALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp HHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred HHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 122334588999999999999998876431110 111222455667888899988765443
No 168
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.42 E-value=3.3e-06 Score=93.13 Aligned_cols=181 Identities=14% Similarity=0.119 Sum_probs=105.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhccccccccC--eeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhc
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNNNDVINHFE--KRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIA 201 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 201 (854)
...+.|+|++|+||||||+.+++. ....+. .+++++.. .+..++...+... .. ..+.+.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~-----~~----~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITSE------KFLNDLVDSMKEG-----KL----NEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEHH------HHHHHHHHHHHTT-----CH----HHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeHH------HHHHHHHHHHHcc-----cH----HHHHHHhc
Confidence 567899999999999999999984 333332 33454432 3344455444322 11 12333344
Q ss_pred CCeEEEEEecCCCcCh--hhHHHHHHhhcC-CCCCcEEEEecccH---------HHHhhccCcceEecCCCCHHHHHHHH
Q 003037 202 RKKFLLVLDDVWTEDY--NKWETFQRCLKN-GLRGSKILVTTRKM---------TVAQMMQSNDVILIRELSEQACWSLF 269 (854)
Q Consensus 202 ~k~~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~l~ 269 (854)
.+.-+|+|||++.-.. ...+.+...+.. ...|..||+||.+. .+...+.....+.+.+++.++..+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 3678999999954321 233444444432 23567888888752 22333333467899999999999999
Q ss_pred HHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHHHhhh------ccC-CCHHHHHHHHhh
Q 003037 270 EQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTIGSLL------RFK-RSSREWQSILDS 325 (854)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~l------~~~-~~~~~w~~~~~~ 325 (854)
.+.+...+..... ++...|++.++|.+-.+..+...+ ... -+.+.++.++..
T Consensus 273 ~~~~~~~~~~i~~----e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~ 331 (440)
T 2z4s_A 273 RKMLEIEHGELPE----EVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKD 331 (440)
T ss_dssp HHHHHHHTCCCCT----THHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTST
T ss_pred HHHHHHcCCCCCH----HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 8876422211122 335567788999886554332211 111 255666666554
No 169
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.40 E-value=5.2e-06 Score=86.26 Aligned_cols=186 Identities=16% Similarity=0.156 Sum_probs=101.4
Q ss_pred cCCccccchhHHHHHHHHhcccccc-------cCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccC
Q 003037 95 DVSEVRGRDEEKNTLKSKLLCESSE-------QQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFD 167 (854)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 167 (854)
....++|.++.+++|.+.+...... +....+.+.|+|++|+|||+||+.+++. .... .+.+..+.-.
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~---~~~v~~~~~~- 88 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNAT---FIRVVGSELV- 88 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCE---EEEEEGGGGC-
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehHHHH-
Confidence 3467999999999998887532000 0123456889999999999999999984 2222 2223322111
Q ss_pred HHHHHHHHHHHhcCCCCCCccHHH-HHHHHHHHhcCCeEEEEEecCCCc-----------ChhhHHHHHH---hhc--CC
Q 003037 168 EFRIAKAIIEALEGSTPSLGELNS-LLERIYASIARKKFLLVLDDVWTE-----------DYNKWETFQR---CLK--NG 230 (854)
Q Consensus 168 ~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~l~~---~l~--~~ 230 (854)
... ...... +...+......++.+|+|||+..- +......+.. .+. ..
T Consensus 89 -------------~~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 153 (285)
T 3h4m_A 89 -------------KKF--IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA 153 (285)
T ss_dssp -------------CCS--TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS
T ss_pred -------------Hhc--cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC
Confidence 000 011112 222222333456789999999321 1111222333 222 22
Q ss_pred CCCcEEEEecccHHHHhh--c---cCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCC-CcHHHH
Q 003037 231 LRGSKILVTTRKMTVAQM--M---QSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKG-LPLAAK 304 (854)
Q Consensus 231 ~~gs~ilvTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~G-lPLai~ 304 (854)
..+..||.||........ . .-...+.+...+.++..+++...+..... .....+ ..|++.+.| .|-.|.
T Consensus 154 ~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~----~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 154 RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVNL----EEIAKMTEGCVGAELK 228 (285)
T ss_dssp SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCCH----HHHHHHCTTCCHHHHH
T ss_pred CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCCH----HHHHHHcCCCCHHHHH
Confidence 345677777765432211 1 11247889999999999999887643221 112222 445666666 454444
Q ss_pred HH
Q 003037 305 TI 306 (854)
Q Consensus 305 ~~ 306 (854)
.+
T Consensus 229 ~l 230 (285)
T 3h4m_A 229 AI 230 (285)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 170
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.40 E-value=5e-06 Score=88.34 Aligned_cols=171 Identities=9% Similarity=0.030 Sum_probs=106.0
Q ss_pred hhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhcccccc--------------------ccCeeEEEEe
Q 003037 103 DEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVIN--------------------HFEKRIWVCV 162 (854)
Q Consensus 103 ~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~f~~~~wv~~ 162 (854)
++..+.+...+.... -...+.++|+.|+|||++|+.+++...-.. |++ ..++..
T Consensus 8 ~~~~~~l~~~i~~~~-----~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~ 81 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-----GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAP 81 (334)
T ss_dssp HHHHHHHHHHHHTTC-----CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECC
T ss_pred HHHHHHHHHHHHcCC-----cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEec
Confidence 455667777765322 345788999999999999998887411100 111 223322
Q ss_pred CCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHh-----cCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEE
Q 003037 163 SDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASI-----ARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKIL 237 (854)
Q Consensus 163 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il 237 (854)
.. .......+++.+ +.+.+ .+++-++|+|+++.-.......+...+.....++.+|
T Consensus 82 ~~------------------~~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~I 142 (334)
T 1a5t_A 82 EK------------------GKNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFF 142 (334)
T ss_dssp CT------------------TCSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEE
T ss_pred cc------------------cCCCCCHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEE
Confidence 10 001112222221 22222 2567899999997655566777888887766677777
Q ss_pred EecccHH-HH-hhccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHHH
Q 003037 238 VTTRKMT-VA-QMMQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTIG 307 (854)
Q Consensus 238 vTtR~~~-v~-~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~ 307 (854)
++|.+.. +. ...+....+.+.+++.++..+.+.... . .. .+.+..+++.++|.|..+..+.
T Consensus 143 l~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~---~--~~----~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 143 LATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV---T--MS----QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp EEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC---C--CC----HHHHHHHHHHTTTCHHHHHHTT
T ss_pred EEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc---C--CC----HHHHHHHHHHcCCCHHHHHHHh
Confidence 7776543 22 222335689999999999999998764 1 11 2345678899999998765543
No 171
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.39 E-value=1.1e-05 Score=82.51 Aligned_cols=189 Identities=14% Similarity=0.077 Sum_probs=100.7
Q ss_pred cCCccccchhHHHHHHHHhcccccc------cCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCH
Q 003037 95 DVSEVRGRDEEKNTLKSKLLCESSE------QQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDE 168 (854)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 168 (854)
.-.+++|.++.++.|.+.+...... +....+.+.|+|++|+|||++|+.+++. .... .+.+..+.-.+.
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~~~~~~~~~~ 78 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVP---FLAMAGAEFVEV 78 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCC---EEEEETTTTSSS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEechHHHHhh
Confidence 3467899998888776654321100 0123456889999999999999999984 2222 234444332110
Q ss_pred HHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCc------------C---hhhHHHHHHhhcCC--C
Q 003037 169 FRIAKAIIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTE------------D---YNKWETFQRCLKNG--L 231 (854)
Q Consensus 169 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~------------~---~~~~~~l~~~l~~~--~ 231 (854)
........+...+.......+.+|+||++..- . ......+...+... .
T Consensus 79 ---------------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 143 (262)
T 2qz4_A 79 ---------------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT 143 (262)
T ss_dssp ---------------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTT
T ss_pred ---------------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCC
Confidence 00011112222233333456789999999542 0 11122333333321 2
Q ss_pred CCcEEEEecccHHHH-hh-cc---CcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcH-HHHH
Q 003037 232 RGSKILVTTRKMTVA-QM-MQ---SNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPL-AAKT 305 (854)
Q Consensus 232 ~gs~ilvTtR~~~v~-~~-~~---~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPL-ai~~ 305 (854)
.+..||.||...... .. .. -...+.+...+.++-.+++...+..... ... .......+++.+.|.+- .|..
T Consensus 144 ~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~--~~~~~~~l~~~~~g~~~~~l~~ 220 (262)
T 2qz4_A 144 DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL-TQS--STFYSQRLAELTPGFSGADIAN 220 (262)
T ss_dssp CCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC-CBT--HHHHHHHHHHTCTTCCHHHHHH
T ss_pred CCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC-Ccc--hhhHHHHHHHHCCCCCHHHHHH
Confidence 345666666544321 11 11 1357788999999999999876642221 111 12234668888888764 4443
Q ss_pred H
Q 003037 306 I 306 (854)
Q Consensus 306 ~ 306 (854)
+
T Consensus 221 l 221 (262)
T 2qz4_A 221 I 221 (262)
T ss_dssp H
T ss_pred H
Confidence 3
No 172
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.38 E-value=6.6e-06 Score=89.02 Aligned_cols=199 Identities=13% Similarity=0.058 Sum_probs=107.6
Q ss_pred CCccccchhHHHHH---HHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEe----CCccCH
Q 003037 96 VSEVRGRDEEKNTL---KSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCV----SDPFDE 168 (854)
Q Consensus 96 ~~~~vGr~~~~~~l---~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~----s~~~~~ 168 (854)
.+.+||++..++.+ ...+.... ...+.+.|+|++|+|||++|+.+++. ..... ..+.+.. +.....
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~--l~~~~-~~~~~~~~~~~~~~~~~ 115 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQA--LGPDT-PFTAIAGSEIFSLEMSK 115 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHH--HCSSC-CEEEEEGGGGSCSSSCH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHH--hcccC-Ccccccchhhhhcccch
Confidence 45799999987764 44444322 12357889999999999999999984 22211 1112221 222334
Q ss_pred HHHHHHHHHHhcCC---------------------C--------C-CCccHHHHHHHHHHHh-----cCC----eEEEEE
Q 003037 169 FRIAKAIIEALEGS---------------------T--------P-SLGELNSLLERIYASI-----ARK----KFLLVL 209 (854)
Q Consensus 169 ~~~~~~i~~~l~~~---------------------~--------~-~~~~~~~~~~~l~~~l-----~~k----~~LlVl 209 (854)
...+.+........ . . .......+...+.... .++ +.+|+|
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~I 195 (368)
T 3uk6_A 116 TEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFI 195 (368)
T ss_dssp HHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEE
T ss_pred hHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEE
Confidence 44444443331110 0 0 0000122222222111 233 359999
Q ss_pred ecCCCcChhhHHHHHHhhcCCCCCcEEEEeccc-------------HHH-HhhccCcceEecCCCCHHHHHHHHHHHhcC
Q 003037 210 DDVWTEDYNKWETFQRCLKNGLRGSKILVTTRK-------------MTV-AQMMQSNDVILIRELSEQACWSLFEQLAFF 275 (854)
Q Consensus 210 Ddv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-------------~~v-~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~ 275 (854)
|++..-.......+...+...... .++++|.. ..+ .........+.+.+++.++..+++...+..
T Consensus 196 DEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~ 274 (368)
T 3uk6_A 196 DEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEE 274 (368)
T ss_dssp ESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred hhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHH
Confidence 999765556666777766654443 34444421 011 111122345899999999999999877643
Q ss_pred CCCCCCchHHHHHHHHHHhhcC-CCcHHHHHH
Q 003037 276 GRPRSECEQLIEIGRKIVGKCK-GLPLAAKTI 306 (854)
Q Consensus 276 ~~~~~~~~~~~~~~~~I~~~~~-GlPLai~~~ 306 (854)
...... .+....|++.+. |.|-.+..+
T Consensus 275 ~~~~~~----~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 275 EDVEMS----EDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp TTCCBC----HHHHHHHHHHHHHSCHHHHHHH
T ss_pred cCCCCC----HHHHHHHHHHhcCCCHHHHHHH
Confidence 222111 345566788887 777655443
No 173
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.38 E-value=4.8e-06 Score=88.33 Aligned_cols=180 Identities=13% Similarity=0.099 Sum_probs=106.0
Q ss_pred cCCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHH
Q 003037 95 DVSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKA 174 (854)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 174 (854)
.-.+++|+++.++.+..++.... ...++.+.|++|+|||++|+.+++. .. ...+.++.+.. .. ..+..
T Consensus 24 ~~~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~--l~---~~~~~i~~~~~-~~-~~i~~ 91 (324)
T 3u61_B 24 TIDECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHD--VN---ADMMFVNGSDC-KI-DFVRG 91 (324)
T ss_dssp STTTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHH--TT---EEEEEEETTTC-CH-HHHHT
T ss_pred CHHHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH--hC---CCEEEEccccc-CH-HHHHH
Confidence 34679999999999999997432 3457788889999999999999884 21 12344554332 22 22222
Q ss_pred HHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcC-hhhHHHHHHhhcCCCCCcEEEEecccHHH-Hhh-ccC
Q 003037 175 IIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTED-YNKWETFQRCLKNGLRGSKILVTTRKMTV-AQM-MQS 251 (854)
Q Consensus 175 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~ilvTtR~~~v-~~~-~~~ 251 (854)
.+........ ..+++.++|+||+..-. ....+.+...+.....+.++|+||....- ... ...
T Consensus 92 ~~~~~~~~~~---------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR 156 (324)
T 3u61_B 92 PLTNFASAAS---------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR 156 (324)
T ss_dssp HHHHHHHBCC---------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH
T ss_pred HHHHHHhhcc---------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh
Confidence 2221110000 12478899999996654 44566666666554456788888865431 111 112
Q ss_pred cceEecCCCCHHHHHHHH-------HHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHH
Q 003037 252 NDVILIRELSEQACWSLF-------EQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAK 304 (854)
Q Consensus 252 ~~~~~l~~L~~~e~~~l~-------~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~ 304 (854)
...+.+++++.++-.+++ ...+...+..... .+....|++.++|.+-.+.
T Consensus 157 ~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~---~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 157 CRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD---MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC---HHHHHHHHHHTCSCTTHHH
T ss_pred CcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHhCCCCHHHHH
Confidence 357899999988843332 2222111111111 2456668888888776443
No 174
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.34 E-value=6e-07 Score=96.47 Aligned_cols=89 Identities=17% Similarity=0.148 Sum_probs=46.6
Q ss_pred CCcccccCCCceEEEEec-CCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccc-cccccCCCceeeecCCC
Q 003037 473 FPDSIFSAKKLRSFLIHS-TNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPK-EIKKLIHLRFLKLVWLD 550 (854)
Q Consensus 473 ~~~~~~~~~~Lr~L~l~~-~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~-~i~~L~~L~~L~L~~~~ 550 (854)
+|. +..+.+|+.|++.+ |. +..+.+..|.++++|++|+|++|. +..+|. .|++|.+|++|+|++|.
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~---l~~~~~~~~~~l~~L~~L~l~~N~--------l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQH---LQHLELRDLRGLGELRNLTIVKSG--------LRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSS---CCEECGGGSCSCCCCSEEECCSSC--------CCEECTTGGGSCSCCCEEECCSSC
T ss_pred cCC-CCCCCCeeEEEccCCCC---CCCcChhHhccccCCCEEECCCCc--------cceeCHHHhcCCcCCCEEeCCCCc
Confidence 344 55555555555553 44 344334455555555555555555 444432 34555555555555555
Q ss_pred CcccchhhhcCCCCcEEeecCcc
Q 003037 551 IEELPETCCELFNVQTLEVLDCR 573 (854)
Q Consensus 551 i~~lP~~i~~L~~L~~L~l~~~~ 573 (854)
|+.+|..+.....|+.|++.+|.
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSSC
T ss_pred cceeCHHHcccCCceEEEeeCCC
Confidence 55555544333335555555554
No 175
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.32 E-value=7.5e-07 Score=95.67 Aligned_cols=94 Identities=14% Similarity=0.104 Sum_probs=77.3
Q ss_pred EEEEecC-CCCcccCchhhhhcCCCcccEEEecC-CCCcccccccccccc-ccccccCCCceeeecCCCCcccch-hhhc
Q 003037 485 SFLIHST-NKDLISPVLPVLFDQLTCLRTLKITG-ISGEKRYFRIIVEIP-KEIKKLIHLRFLKLVWLDIEELPE-TCCE 560 (854)
Q Consensus 485 ~L~l~~~-~~~~~~~~l~~~~~~l~~Lr~L~L~~-~~~~~~~~~~i~~lP-~~i~~L~~L~~L~L~~~~i~~lP~-~i~~ 560 (854)
.+.+.++ . +.. +|. +..+++|+.|+|++ |. +..+| ..|++|.+|++|+|++|.|+.+|+ .+.+
T Consensus 12 ~v~~~~~n~---l~~-ip~-l~~~~~L~~L~l~~~n~--------l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 78 (347)
T 2ifg_A 12 GLRCTRDGA---LDS-LHH-LPGAENLTELYIENQQH--------LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF 78 (347)
T ss_dssp CEECCSSCC---CTT-TTT-SCSCSCCSEEECCSCSS--------CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGS
T ss_pred EEEcCCCCC---CCc-cCC-CCCCCCeeEEEccCCCC--------CCCcChhHhccccCCCEEECCCCccceeCHHHhcC
Confidence 3455554 3 555 677 99999999999997 88 88887 579999999999999999998876 6799
Q ss_pred CCCCcEEeecCcccccccccccccCCCCcccC
Q 003037 561 LFNVQTLEVLDCRSFRRLPQGFGKLVNLRNLS 592 (854)
Q Consensus 561 L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~ 592 (854)
|++|+.|+|++|. +..+|.++....+|+.|.
T Consensus 79 l~~L~~L~l~~N~-l~~~~~~~~~~~~L~~l~ 109 (347)
T 2ifg_A 79 TPRLSRLNLSFNA-LESLSWKTVQGLSLQELV 109 (347)
T ss_dssp CSCCCEEECCSSC-CSCCCSTTTCSCCCCEEE
T ss_pred CcCCCEEeCCCCc-cceeCHHHcccCCceEEE
Confidence 9999999999998 889998765544477773
No 176
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.31 E-value=6.7e-06 Score=86.59 Aligned_cols=161 Identities=14% Similarity=0.115 Sum_probs=92.3
Q ss_pred ccccchhHHHHHHHHhccccc---------ccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCH
Q 003037 98 EVRGRDEEKNTLKSKLLCESS---------EQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDE 168 (854)
Q Consensus 98 ~~vGr~~~~~~l~~~L~~~~~---------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 168 (854)
.++|.++.++.|.+.+..... ........+.|+|++|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 478999888888766542100 00123456889999999999999988874222222212223333311
Q ss_pred HHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCc---------ChhhHHHHHHhhcCCCCCcEEEEe
Q 003037 169 FRIAKAIIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTE---------DYNKWETFQRCLKNGLRGSKILVT 239 (854)
Q Consensus 169 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvT 239 (854)
.+..... ..........+... +.-+|+||++..- .......+...+.....+..||.|
T Consensus 109 ---------~l~~~~~-g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 109 ---------DLVGQYI-GHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp ---------GTCCSST-TCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred ---------Hhhhhcc-cccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 1111111 01111222222222 3459999999522 445556677777766667788888
Q ss_pred cccHHHHhh-------c-cCcceEecCCCCHHHHHHHHHHHhc
Q 003037 240 TRKMTVAQM-------M-QSNDVILIRELSEQACWSLFEQLAF 274 (854)
Q Consensus 240 tR~~~v~~~-------~-~~~~~~~l~~L~~~e~~~l~~~~~~ 274 (854)
|........ . .....+.+++++.++..+++...+.
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 864432111 0 1126889999999999999987764
No 177
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.30 E-value=3.2e-06 Score=95.57 Aligned_cols=199 Identities=15% Similarity=0.150 Sum_probs=110.2
Q ss_pred cCCccccchhHHHHHHHHhcccccc-----------cCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeC
Q 003037 95 DVSEVRGRDEEKNTLKSKLLCESSE-----------QQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVS 163 (854)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~-----------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 163 (854)
.-.+++|+++.++++..++...... +.+..+.+.|+|++|+||||+|+.+++.. .+ .++.++.+
T Consensus 37 ~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----~~-~~i~in~s 111 (516)
T 1sxj_A 37 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----GY-DILEQNAS 111 (516)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----TC-EEEEECTT
T ss_pred CHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----CC-CEEEEeCC
Confidence 4467999999999999998752110 00134688999999999999999999842 12 23445555
Q ss_pred CccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCc---ChhhHHHHHHhhcCCCCCcEEEEec
Q 003037 164 DPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTE---DYNKWETFQRCLKNGLRGSKILVTT 240 (854)
Q Consensus 164 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~ilvTt 240 (854)
...... +....+........-..-.+.... .....+++.+||||++..- +...+..+...+... +..||+++
T Consensus 112 ~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~ 186 (516)
T 1sxj_A 112 DVRSKT-LLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILIC 186 (516)
T ss_dssp SCCCHH-HHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEE
T ss_pred CcchHH-HHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEE
Confidence 443332 222222221111000000000000 0011356889999999542 222345555555443 33455555
Q ss_pred ccHH---HHhhccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCc-HHHHHHH
Q 003037 241 RKMT---VAQMMQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLP-LAAKTIG 307 (854)
Q Consensus 241 R~~~---v~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlP-Lai~~~~ 307 (854)
.... +.........+.+.+++.++..+.+...+...+..... +....|++.++|.+ -++..+.
T Consensus 187 ~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~----~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 187 NERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP----NVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp SCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT----THHHHHHHHTTTCHHHHHHHHT
T ss_pred cCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHcCCcHHHHHHHHH
Confidence 4322 22222234578999999999999987765432221222 23556888899954 4555543
No 178
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.26 E-value=1.9e-05 Score=81.39 Aligned_cols=171 Identities=17% Similarity=0.149 Sum_probs=91.1
Q ss_pred CccccchhHHHHHHHH-------hcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHH
Q 003037 97 SEVRGRDEEKNTLKSK-------LLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEF 169 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~-------L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 169 (854)
..++|++..++++... +.... ....+.+.|+|++|+|||+||+.+++. ....| +.+..+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~---~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~~---~~i~~~~~---- 100 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSD---RTPLVSVLLEGPPHSGKTALAAKIAEE--SNFPF---IKICSPDK---- 100 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCS---SCSEEEEEEECSTTSSHHHHHHHHHHH--HTCSE---EEEECGGG----
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccC---CCCCeEEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEeCHHH----
Confidence 4578888777666652 32111 235778999999999999999999984 22222 22222211
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCc----------ChhhHHHHHHhhcC---CCCCcEE
Q 003037 170 RIAKAIIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTE----------DYNKWETFQRCLKN---GLRGSKI 236 (854)
Q Consensus 170 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------~~~~~~~l~~~l~~---~~~gs~i 236 (854)
+.+. ........+...+......+..+|+|||+..- .......+...+.. ......|
T Consensus 101 ---------~~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 101 ---------MIGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp ---------CTTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred ---------hcCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 0000 00000112222233333467899999998321 11122334443332 2233446
Q ss_pred EEecccHHHHhh---ccC-cceEecCCCCH-HHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCC
Q 003037 237 LVTTRKMTVAQM---MQS-NDVILIRELSE-QACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKG 298 (854)
Q Consensus 237 lvTtR~~~v~~~---~~~-~~~~~l~~L~~-~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~G 298 (854)
|.||........ ... ...+.+++++. ++...++.... . .. .+....|++.+.|
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~-~~----~~~~~~l~~~~~g 228 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----N-FK----DKERTTIAQQVKG 228 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----C-SC----HHHHHHHHHHHTT
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----C-CC----HHHHHHHHHHhcC
Confidence 677776644332 111 45788999988 66666665532 1 12 2345567777777
No 179
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.25 E-value=1.5e-05 Score=85.14 Aligned_cols=177 Identities=12% Similarity=0.106 Sum_probs=106.8
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccC-eeEEEEeCCccCHHHHHHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFE-KRIWVCVSDPFDEFRIAKA 174 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~ 174 (854)
-..++|.+..++.|...+... +...+.++|+.|+||||+|+.+++... ...+. .+.-++.+.....
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~------ 90 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRGI------ 90 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCSH------
T ss_pred HHHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccccH------
Confidence 456899999999998888643 233388999999999999999988411 11111 1122222221111
Q ss_pred HHHHhcCCCCCCccHHHHHHHHHHHh------cCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccHH-HHh
Q 003037 175 IIEALEGSTPSLGELNSLLERIYASI------ARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKMT-VAQ 247 (854)
Q Consensus 175 i~~~l~~~~~~~~~~~~~~~~l~~~l------~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~ 247 (854)
+.+.+.+.... .+.+-++|+|++..-.....+.+...+.......++|++|.... +..
T Consensus 91 ---------------~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~ 155 (340)
T 1sxj_C 91 ---------------DVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTP 155 (340)
T ss_dssp ---------------HHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCH
T ss_pred ---------------HHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccch
Confidence 12211121111 23467899999965555566677777766556677777775432 111
Q ss_pred -hccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHH
Q 003037 248 -MMQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAK 304 (854)
Q Consensus 248 -~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~ 304 (854)
.......+.+.+++.++..+.+...+........ .+..+.|++.++|.+--+.
T Consensus 156 ~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~----~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 156 ALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLS----PNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBC----HHHHHHHHHHHTTCHHHHH
T ss_pred hHHhhceeEeccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 1122457899999999999888776532111111 3456678888999887443
No 180
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.24 E-value=7.8e-06 Score=86.68 Aligned_cols=178 Identities=17% Similarity=0.131 Sum_probs=96.4
Q ss_pred Cccc-cch--hHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHH
Q 003037 97 SEVR-GRD--EEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAK 173 (854)
Q Consensus 97 ~~~v-Gr~--~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 173 (854)
++|| |.. .....+...+.... .....+.|+|++|+||||||+.+++. ....-..+++++.. .+..
T Consensus 11 ~~fv~g~~~~~a~~~~~~~~~~~~----~~~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~~------~~~~ 78 (324)
T 1l8q_A 11 ENFIVGEGNRLAYEVVKEALENLG----SLYNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSAD------DFAQ 78 (324)
T ss_dssp SSCCCCTTTHHHHHHHHHHHHTTT----TSCSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEHH------HHHH
T ss_pred ccCCCCCcHHHHHHHHHHHHhCcC----CCCCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEHH------HHHH
Confidence 4555 533 33444555444321 13456889999999999999999984 21111234455432 2333
Q ss_pred HHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcCh--hhHHHHHHhhcC-CCCCcEEEEecccH-------
Q 003037 174 AIIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTEDY--NKWETFQRCLKN-GLRGSKILVTTRKM------- 243 (854)
Q Consensus 174 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~ilvTtR~~------- 243 (854)
.+...+... ..+. +...+ .+.-+|+|||+..-.. ...+.+...+.. ...+.+||+||...
T Consensus 79 ~~~~~~~~~-----~~~~----~~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l 148 (324)
T 1l8q_A 79 AMVEHLKKG-----TINE----FRNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGV 148 (324)
T ss_dssp HHHHHHHHT-----CHHH----HHHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTS
T ss_pred HHHHHHHcC-----cHHH----HHHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHh
Confidence 443333211 1111 22222 2367999999954322 223334444321 12456788887633
Q ss_pred --HHHhhccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHH
Q 003037 244 --TVAQMMQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLA 302 (854)
Q Consensus 244 --~v~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLa 302 (854)
.+...+.....+.+++ +.++..+++...+........ .+....|++.+ |..-.
T Consensus 149 ~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~----~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 149 SDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELR----KEVIDYLLENT-KNVRE 203 (324)
T ss_dssp CHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCC----HHHHHHHHHHC-SSHHH
T ss_pred hhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHhC-CCHHH
Confidence 1222233335789999 999999999887643222122 34455677777 76643
No 181
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.23 E-value=1.7e-06 Score=79.62 Aligned_cols=114 Identities=18% Similarity=0.089 Sum_probs=71.3
Q ss_pred ccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHH
Q 003037 98 EVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIE 177 (854)
Q Consensus 98 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 177 (854)
+++|++..+.++.+.+..... ...-|.|+|.+|+|||++|+.+++.... ... ..+ ++++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~~~~-~~~-~~v-~~~~~~~~~--------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQFGRN-AQG-EFV-YRELTPDNA--------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHSSTT-TTS-CCE-EEECCTTTS---------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHhCCc-cCC-CEE-EECCCCCcc---------
Confidence 589999999999988764332 2234679999999999999999984221 111 223 655543222
Q ss_pred HhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEeccc
Q 003037 178 ALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRK 242 (854)
Q Consensus 178 ~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 242 (854)
..... .+.. ...-.|+||++..-.......+...+.......++|.||..
T Consensus 66 ---------~~~~~---~~~~---a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 ---------PQLND---FIAL---AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ---------SCHHH---HHHH---HTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ---------hhhhc---HHHH---cCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 11111 1111 12347899999766666666777777665566788888764
No 182
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.22 E-value=2.2e-06 Score=82.60 Aligned_cols=46 Identities=26% Similarity=0.238 Sum_probs=38.8
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
...++||+++++.+.+.+... ..+.+.|+|++|+|||++|+.+++.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999998642 3445789999999999999999874
No 183
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.20 E-value=1.6e-07 Score=100.65 Aligned_cols=144 Identities=19% Similarity=0.102 Sum_probs=83.1
Q ss_pred hCCCCCCCCeEEEeccCCCCCCCCchhhcccCccEEEEecccCCCC-CCCC--CCCCCCCEEEEcCCCCceEeCccccCC
Q 003037 666 ALQPPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQFYLCDT-MPPL--GKLPSLEILEIRGNWNVKRVGDEFLGV 742 (854)
Q Consensus 666 ~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~-l~~l--~~L~~L~~L~L~~~~~l~~i~~~~~~~ 742 (854)
.+.++|+|+.|.| .++.+.. +|. + .+++|++|+|..|.+... +..+ ..+|+|+.|+|+.+... ..+....
T Consensus 167 ll~~~P~L~~L~L-~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~-~~~~~~~-- 239 (362)
T 2ra8_A 167 VLDAMPLLNNLKI-KGTNNLS-IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVED-YGFDGDM-- 239 (362)
T ss_dssp HHHTCTTCCEEEE-ECCBTCB-CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGG-GTCCSCG--
T ss_pred HHhcCCCCcEEEE-eCCCCce-ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccc-cccchhH--
Confidence 3456688999998 6654333 554 3 378899999987764321 1122 36889999988632110 0000000
Q ss_pred CCCCCCccccCCccccCCCccceeeccccccccccccCCCccccCCCccceeeecccccCcC-----CCcCCCCCCCcCE
Q 003037 743 GGGDHLHGISTSSSVIAFPKLKQVLFYNICHWEEWDFGKGDSITIMPQLKKLEFERCTELKS-----VPEKLLRSTTLEE 817 (854)
Q Consensus 743 ~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-----lp~~l~~l~~L~~ 817 (854)
.. +........||+|+.|.+.+|.-......... ....+|+|++|+|+.| .++. ++.++.++++|+.
T Consensus 240 ---~~---l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la-~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~ 311 (362)
T 2ra8_A 240 ---NV---FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFL-ESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKF 311 (362)
T ss_dssp ---GG---TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHH-HCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSE
T ss_pred ---HH---HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHH-hCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceE
Confidence 00 00000113589999999987543221110000 0125889999999877 4554 5556667889999
Q ss_pred EEEecCc
Q 003037 818 LSIVECP 824 (854)
Q Consensus 818 L~l~~c~ 824 (854)
|+|++|.
T Consensus 312 L~L~~n~ 318 (362)
T 2ra8_A 312 INMKYNY 318 (362)
T ss_dssp EECCSBB
T ss_pred EECCCCc
Confidence 9999886
No 184
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.13 E-value=4.1e-05 Score=82.07 Aligned_cols=188 Identities=13% Similarity=0.088 Sum_probs=102.5
Q ss_pred cCCccccchhHHHHHHHHhcccccc------cCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCH
Q 003037 95 DVSEVRGRDEEKNTLKSKLLCESSE------QQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDE 168 (854)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 168 (854)
.-..++|.++.++.|.+.+...... .....+.|.|+|++|+|||+||+.+++. ... ..+.++.+.-..
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~---~~~~i~~~~l~~- 155 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGA---TFFSISASSLTS- 155 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTC---EEEEEEGGGGCC-
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCC---eEEEEehHHhhc-
Confidence 3457999999999998877531000 0123567889999999999999999884 222 223444432111
Q ss_pred HHHHHHHHHHhcCCCCCCccHHHHHHHHHH-HhcCCeEEEEEecCCCc-----------ChhhHHHHHHhhcCC----CC
Q 003037 169 FRIAKAIIEALEGSTPSLGELNSLLERIYA-SIARKKFLLVLDDVWTE-----------DYNKWETFQRCLKNG----LR 232 (854)
Q Consensus 169 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~-----------~~~~~~~l~~~l~~~----~~ 232 (854)
.. ....+.....+.. .-..++.+|+||++..- .......+...+... ..
T Consensus 156 -------------~~--~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 220 (357)
T 3d8b_A 156 -------------KW--VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSED 220 (357)
T ss_dssp -------------SS--TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCC
T ss_pred -------------cc--cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCC
Confidence 00 0111222222222 22356789999998321 011223344444321 23
Q ss_pred CcEEEEecccHH-HHhhc--cCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCC-CcHHHHHHH
Q 003037 233 GSKILVTTRKMT-VAQMM--QSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKG-LPLAAKTIG 307 (854)
Q Consensus 233 gs~ilvTtR~~~-v~~~~--~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~G-lPLai~~~~ 307 (854)
+..||.||.... +...+ .-...+.+...+.++..+++...+........ ......|++.+.| .+-.+..+.
T Consensus 221 ~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 221 RILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS----EEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp CEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 445555665432 11111 11346788888999998888776642221111 2345667888888 455565554
No 185
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.12 E-value=4.3e-05 Score=80.74 Aligned_cols=188 Identities=19% Similarity=0.146 Sum_probs=104.1
Q ss_pred cCCccccchhHHHHHHHHhcccc------cccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCH
Q 003037 95 DVSEVRGRDEEKNTLKSKLLCES------SEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDE 168 (854)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 168 (854)
.-..++|.++.++.|.+.+.... .......+-|.|+|++|+|||+||+.+++. ....| +.++.+
T Consensus 16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~~---~~v~~~----- 85 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS----- 85 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCEE---EEEEHH-----
T ss_pred CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCCE---EEEchH-----
Confidence 34679999999999988773110 000223457889999999999999999984 22222 223221
Q ss_pred HHHHHHHHHHhcCCCCCCccHHHHHHHHHH-HhcCCeEEEEEecCCCcC-----------hhhHHHHHHhhc---CCCCC
Q 003037 169 FRIAKAIIEALEGSTPSLGELNSLLERIYA-SIARKKFLLVLDDVWTED-----------YNKWETFQRCLK---NGLRG 233 (854)
Q Consensus 169 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~-----------~~~~~~l~~~l~---~~~~g 233 (854)
.+ . ... ....+.....+.. .-..++.+|+||++..-. ......+...+. ....+
T Consensus 86 -~l----~----~~~--~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 154 (322)
T 3eie_A 86 -DL----V----SKW--MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 154 (322)
T ss_dssp -HH----H----TTT--GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCC
T ss_pred -HH----h----hcc--cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCc
Confidence 11 1 110 1122222223322 224567899999994311 011334444443 23345
Q ss_pred cEEEEecccHHHHh-hc--cCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCC-cHHHHHHH
Q 003037 234 SKILVTTRKMTVAQ-MM--QSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGL-PLAAKTIG 307 (854)
Q Consensus 234 s~ilvTtR~~~v~~-~~--~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~Gl-PLai~~~~ 307 (854)
..||.||....... .+ .-...+.+...+.++-.+++...+......... .....|++++.|. +-.|..+.
T Consensus 155 v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~----~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 155 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTK----EDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCH----HHHHHHHHTTTTCCHHHHHHHH
T ss_pred eEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCH----HHHHHHHHHcCCCCHHHHHHHH
Confidence 56666766432211 11 123467888899999999998876432221122 2345677888774 54555443
No 186
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.09 E-value=0.00018 Score=75.66 Aligned_cols=189 Identities=18% Similarity=0.148 Sum_probs=101.8
Q ss_pred cCCccccchhHHHHHHHHhccccc------ccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCH
Q 003037 95 DVSEVRGRDEEKNTLKSKLLCESS------EQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDE 168 (854)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 168 (854)
.-.+++|.++.++.|.+.+..+.. +.....+-|.|+|++|+|||+||+.+++... .. ..+.++.+.-.
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~---~~~~i~~~~l~-- 83 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NS---TFFSISSSDLV-- 83 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SC---EEEEEECCSSC--
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CC---cEEEEEhHHHH--
Confidence 346799999998888876632100 0012346788999999999999999998420 11 12233333211
Q ss_pred HHHHHHHHHHhcCCCCCCccHHHHHHHHHH-HhcCCeEEEEEecCCCc-------Chh----hHHHHHHhhcC---CCCC
Q 003037 169 FRIAKAIIEALEGSTPSLGELNSLLERIYA-SIARKKFLLVLDDVWTE-------DYN----KWETFQRCLKN---GLRG 233 (854)
Q Consensus 169 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~-------~~~----~~~~l~~~l~~---~~~g 233 (854)
.... ...+.....+.+ .-..++.+|+||++..- ... ....+...+.. ...+
T Consensus 84 ------------~~~~--g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~ 149 (322)
T 1xwi_A 84 ------------SKWL--GESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 149 (322)
T ss_dssp ------------CSSC--CSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTT
T ss_pred ------------hhhh--hHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCC
Confidence 0000 111222222322 22467889999999531 001 11223333332 2344
Q ss_pred cEEEEecccHHH-Hhhc--cCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCC-cHHHHHHH
Q 003037 234 SKILVTTRKMTV-AQMM--QSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGL-PLAAKTIG 307 (854)
Q Consensus 234 s~ilvTtR~~~v-~~~~--~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~Gl-PLai~~~~ 307 (854)
..||.||..... ...+ .-...+.+...+.++-.+++..+......... ......|++.+.|. +-.|..+.
T Consensus 150 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 150 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT----EADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp EEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC----HHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 455556643321 1111 22356788888999989999876632221111 23456688889887 44455544
No 187
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.07 E-value=0.00026 Score=73.79 Aligned_cols=185 Identities=15% Similarity=0.133 Sum_probs=100.2
Q ss_pred cCCccccchhHHHHHHHHhccccc------ccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCH
Q 003037 95 DVSEVRGRDEEKNTLKSKLLCESS------EQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDE 168 (854)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 168 (854)
.-..++|.++.++.+.+.+..... ......+.+.|+|++|+||||+|+.+++. .... .+.++.+.-..
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~~---~~~i~~~~l~~- 92 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSAT---FLNISAASLTS- 92 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTCE---EEEEESTTTSS-
T ss_pred CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEeeHHHHhh-
Confidence 346799999999999887743110 00113457889999999999999999984 2222 23333332110
Q ss_pred HHHHHHHHHHhcCCCCCCccHHHHHHHHH-HHhcCCeEEEEEecCCCcC-----------hhhHHHHHHhhcCC-----C
Q 003037 169 FRIAKAIIEALEGSTPSLGELNSLLERIY-ASIARKKFLLVLDDVWTED-----------YNKWETFQRCLKNG-----L 231 (854)
Q Consensus 169 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~~-----------~~~~~~l~~~l~~~-----~ 231 (854)
.. ....+.....+. .....++.+|+||++..-. ......+...+... .
T Consensus 93 -------------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 157 (297)
T 3b9p_A 93 -------------KY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDG 157 (297)
T ss_dssp -------------SS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-----
T ss_pred -------------cc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCC
Confidence 00 111222222222 2234567899999984310 11112233333211 1
Q ss_pred CCcEEEEecccHH-----HHhhccCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcH-HHHH
Q 003037 232 RGSKILVTTRKMT-----VAQMMQSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPL-AAKT 305 (854)
Q Consensus 232 ~gs~ilvTtR~~~-----v~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPL-ai~~ 305 (854)
.+..||.||.... +... -...+.+...+.++...++...+........ ......|++.+.|.+- ++..
T Consensus 158 ~~v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~~~~la~~~~g~~~~~l~~ 231 (297)
T 3b9p_A 158 DRIVVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGSPLD----TEALRRLAKITDGYSGSDLTA 231 (297)
T ss_dssp -CEEEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSCCSC----HHHHHHHHHHTTTCCHHHHHH
T ss_pred CcEEEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHH
Confidence 3345666666532 2221 2246777777888888888776532211111 2345668888888876 4544
Q ss_pred H
Q 003037 306 I 306 (854)
Q Consensus 306 ~ 306 (854)
+
T Consensus 232 l 232 (297)
T 3b9p_A 232 L 232 (297)
T ss_dssp H
T ss_pred H
Confidence 4
No 188
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.07 E-value=0.00011 Score=78.45 Aligned_cols=188 Identities=18% Similarity=0.122 Sum_probs=100.6
Q ss_pred cCCccccchhHHHHHHHHhccccc------ccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCH
Q 003037 95 DVSEVRGRDEEKNTLKSKLLCESS------EQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDE 168 (854)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 168 (854)
.-.+++|.++.++.|...+..... ......+-|.|+|++|+|||+||+.+++. ....| +.++.+
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~~---~~v~~~----- 118 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS----- 118 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCEE---EEEEHH-----
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEeeHH-----
Confidence 345799999999999887632100 00123345889999999999999999984 22222 222221
Q ss_pred HHHHHHHHHHhcCCCCCCccHHHHHHHHHH-HhcCCeEEEEEecCCCcCh-----------hhHHHHHHhhcC---CCCC
Q 003037 169 FRIAKAIIEALEGSTPSLGELNSLLERIYA-SIARKKFLLVLDDVWTEDY-----------NKWETFQRCLKN---GLRG 233 (854)
Q Consensus 169 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~-----------~~~~~l~~~l~~---~~~g 233 (854)
.+. .... ...+.....+.. .-..++.+|+||++..-.. .....+...+.. ...+
T Consensus 119 -~l~--------~~~~--g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 187 (355)
T 2qp9_X 119 -DLV--------SKWM--GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 187 (355)
T ss_dssp -HHH--------SCC-----CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CC
T ss_pred -HHh--------hhhc--chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCC
Confidence 111 1100 011222222222 2245789999999953210 012334333331 2345
Q ss_pred cEEEEecccHHH-Hhh-c-cCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCC-cHHHHHHH
Q 003037 234 SKILVTTRKMTV-AQM-M-QSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGL-PLAAKTIG 307 (854)
Q Consensus 234 s~ilvTtR~~~v-~~~-~-~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~Gl-PLai~~~~ 307 (854)
..||.||..... ... . .-...+.+...+.++-.+++...+........ ......|++.+.|. +-.|..+.
T Consensus 188 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~----~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 188 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT----KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred eEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 556656654321 111 1 22356788888999999999887643221112 22345677888884 54455543
No 189
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.06 E-value=2.8e-05 Score=80.82 Aligned_cols=149 Identities=12% Similarity=0.033 Sum_probs=95.2
Q ss_pred cchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccc-cccccCeeEEEEeCC-ccCHHHHHHHHHHH
Q 003037 101 GRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNND-VINHFEKRIWVCVSD-PFDEFRIAKAIIEA 178 (854)
Q Consensus 101 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~ 178 (854)
|-++.++.|...+.. ++...+.++|+.|+||||+|+.+++... .........++..+. ...+.. .+++.+.
T Consensus 1 g~~~~~~~L~~~i~~------~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEK------SEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHT------CSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHC------CCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHH
Confidence 445667777777753 2367889999999999999999987310 111122334454432 222222 2334444
Q ss_pred hcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccH-HHHhhccCcceEec
Q 003037 179 LEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKM-TVAQMMQSNDVILI 257 (854)
Q Consensus 179 l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~~~~~~~~l 257 (854)
+...+ ..+++-++|+|++..-.......++..+......+.+|++|.+. .+...+... .+++
T Consensus 74 ~~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f 136 (305)
T 2gno_A 74 LNYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRV 136 (305)
T ss_dssp HTSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEE
T ss_pred Hhhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeC
Confidence 32211 12456789999997766677788888888777788888776544 333333334 9999
Q ss_pred CCCCHHHHHHHHHHHh
Q 003037 258 RELSEQACWSLFEQLA 273 (854)
Q Consensus 258 ~~L~~~e~~~l~~~~~ 273 (854)
++++.++..+.+.+..
T Consensus 137 ~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 137 VVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ECCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998765
No 190
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.02 E-value=1.2e-05 Score=77.04 Aligned_cols=121 Identities=16% Similarity=0.200 Sum_probs=64.8
Q ss_pred chhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcC
Q 003037 102 RDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEG 181 (854)
Q Consensus 102 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 181 (854)
+.+.++.+..++..-.. .....+.|+|++|+||||||+.+++.......+ .+++++ ..++...+......
T Consensus 19 ~~~~~~~~~~~~~~~~~---~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~ 88 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNP---EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDE 88 (180)
T ss_dssp HHHHHHHHHHHHHSCCG---GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc---cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcC
Confidence 34455555555543321 235678999999999999999998842211111 233443 34444444444332
Q ss_pred CCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHH--HHHHhhcCC-CCCcEEEEeccc
Q 003037 182 STPSLGELNSLLERIYASIARKKFLLVLDDVWTEDYNKWE--TFQRCLKNG-LRGSKILVTTRK 242 (854)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~ilvTtR~ 242 (854)
.... ... +.+ .+.-+|||||++....+.|. .+...+... ..|..+|+||..
T Consensus 89 ~~~~-----~~~----~~~-~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 89 GKDT-----KFL----KTV-LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp TCCS-----HHH----HHH-HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred chHH-----HHH----HHh-cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 2111 111 122 24668999999742223333 343333321 246778888863
No 191
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.02 E-value=0.00057 Score=72.37 Aligned_cols=178 Identities=17% Similarity=0.201 Sum_probs=96.9
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAI 175 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 175 (854)
-..++|.+..++.+...+...... .+....+.|+|++|+||||||+.++.. ....| ...-+....
T Consensus 24 l~~~~g~~~~~~~l~~~i~~~~~~-~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~----~~~sg~~~~-------- 88 (334)
T 1in4_A 24 LDEFIGQENVKKKLSLALEAAKMR-GEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNI----HVTSGPVLV-------- 88 (334)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHH-TCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCE----EEEETTTCC--------
T ss_pred HHHccCcHHHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE----EEEechHhc--------
Confidence 456899988888887766532110 123467899999999999999999984 22222 111111110
Q ss_pred HHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCC------------------CCcEEE
Q 003037 176 IEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGL------------------RGSKIL 237 (854)
Q Consensus 176 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~il 237 (854)
...++.. +...+ .++.++++|++..-.....+.+...+.... ....++
T Consensus 89 ------------~~~~l~~-~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li 154 (334)
T 1in4_A 89 ------------KQGDMAA-ILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV 154 (334)
T ss_dssp ------------SHHHHHH-HHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEE
T ss_pred ------------CHHHHHH-HHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE
Confidence 0111111 11112 234577888875433334444443332211 011222
Q ss_pred -EecccHHHHhhccC--cceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHH
Q 003037 238 -VTTRKMTVAQMMQS--NDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTI 306 (854)
Q Consensus 238 -vTtR~~~v~~~~~~--~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~ 306 (854)
.|++...+...... .-...+.+.+.++..+++.+.+..... ....+.+..|++++.|.|-.+..+
T Consensus 155 ~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~----~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 155 GATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV----EIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----CBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred EecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHhcCCChHHHHHH
Confidence 24443322211111 235789999999999999887632111 112355788999999999765443
No 192
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.99 E-value=6e-05 Score=82.21 Aligned_cols=284 Identities=14% Similarity=0.132 Sum_probs=152.3
Q ss_pred ccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccccc-ccccccCCCceeeecCC-----
Q 003037 476 SIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIP-KEIKKLIHLRFLKLVWL----- 549 (854)
Q Consensus 476 ~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP-~~i~~L~~L~~L~L~~~----- 549 (854)
.|.++.+|+++.+..+ +..+-...|.+|.+|+.++|..+ +..++ ..+.++..|+.+.+..+
T Consensus 66 AF~~c~~L~~i~lp~~----i~~I~~~aF~~c~~L~~i~lp~~---------l~~I~~~aF~~c~~L~~i~~p~~l~~i~ 132 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST----VREIGEFAFENCSKLEIINIPDS---------VKMIGRCTFSGCYALKSILLPLMLKSIG 132 (394)
T ss_dssp TTTTCTTEEEEECCTT----CCEECTTTTTTCTTCCEECCCTT---------CCEECTTTTTTCTTCCCCCCCTTCCEEC
T ss_pred HhhCCCCceEEEeCCC----ccCcchhHhhCCCCCcEEEeCCC---------ceEccchhhcccccchhhcccCceeeec
Confidence 4566777888777532 33434556777888888877543 23332 23444555554444321
Q ss_pred ----------------CCcccc-hhhhcCCCCcEEeecCcccccccccc-cccCCCCcccCcee-ecCCCCCCccccccc
Q 003037 550 ----------------DIEELP-ETCCELFNVQTLEVLDCRSFRRLPQG-FGKLVNLRNLSKFI-VSRSGGSKLEDLRQL 610 (854)
Q Consensus 550 ----------------~i~~lP-~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~~~~-~~~~~~~~l~~L~~L 610 (854)
.+..+. ..+.++.+|+.+.+..+ +..++.+ +..+.+|+.+..-. +..-......++..|
T Consensus 133 ~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L 210 (394)
T 4fs7_A 133 VEAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILL 210 (394)
T ss_dssp TTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTC
T ss_pred ceeeecccccccccCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCCceEeCchhhcccccc
Confidence 111122 24567788888888754 3455544 45667777663210 000011122223333
Q ss_pred ccCCceeEEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCCc
Q 003037 611 KHLRGSLKIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWPS 690 (854)
Q Consensus 611 ~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~ 690 (854)
+.+. +.. +... ..........|+.+.+... ....-...+..+.+|+.+.+ ....... -..
T Consensus 211 ~~i~----~~~--~~~~----i~~~~~~~~~l~~i~ip~~--------~~~i~~~~f~~~~~l~~~~~-~~~~~~i-~~~ 270 (394)
T 4fs7_A 211 ENME----FPN--SLYY----LGDFALSKTGVKNIIIPDS--------FTELGKSVFYGCTDLESISI-QNNKLRI-GGS 270 (394)
T ss_dssp CBCC----CCT--TCCE----ECTTTTTTCCCCEEEECTT--------CCEECSSTTTTCSSCCEEEE-CCTTCEE-CSC
T ss_pred ceee----cCC--CceE----eehhhcccCCCceEEECCC--------ceecccccccccccceeEEc-CCCccee-ecc
Confidence 3221 100 0000 0112234467777777432 00000123455678888888 4333221 233
Q ss_pred hhhcccCccEEEEecccCCCCCCCCCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCCCccceeeccc
Q 003037 691 WIVSLNKLKKLVLYQFYLCDTMPPLGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLKQVLFYN 770 (854)
Q Consensus 691 ~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 770 (854)
.+..+.+|+.+.+....... ..+..+.+|+.+.+.++ ++.|++..+ ..+.+|+.+.+.+
T Consensus 271 ~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~--i~~I~~~aF-----------------~~c~~L~~i~lp~ 329 (394)
T 4fs7_A 271 LFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS--VKFIGEEAF-----------------ESCTSLVSIDLPY 329 (394)
T ss_dssp TTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT--CCEECTTTT-----------------TTCTTCCEECCCT
T ss_pred ccccccccceeccCceeecc--ccccccccccccccccc--cceechhhh-----------------cCCCCCCEEEeCC
Confidence 45577888887776543211 12667888999988753 677776533 2466788877743
Q ss_pred cccccccccCCCccccCCCccceeeecccccCcCCC-cCCCCCCCcCEEEEec
Q 003037 771 ICHWEEWDFGKGDSITIMPQLKKLEFERCTELKSVP-EKLLRSTTLEELSIVE 822 (854)
Q Consensus 771 ~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~ 822 (854)
.++.+. ..++..+.+|+.+.+..+ +..++ ..+.++++|+++++..
T Consensus 330 --~v~~I~---~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 330 --LVEEIG---KRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp --TCCEEC---TTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred --cccEEh---HHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence 234333 235667888998888654 66665 4577788999998864
No 193
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.96 E-value=0.0003 Score=76.37 Aligned_cols=190 Identities=12% Similarity=0.083 Sum_probs=99.7
Q ss_pred cccCCccccchhHHHHHHHHhcccccc------cCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCcc
Q 003037 93 LIDVSEVRGRDEEKNTLKSKLLCESSE------QQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPF 166 (854)
Q Consensus 93 ~~~~~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 166 (854)
+..-.+++|++..++.|...+...... .....+-|.|+|++|+|||+||+.+++. ... ..+.++.+.-.
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~---~~~~v~~~~l~ 185 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNA---TFFNISAASLT 185 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTC---EEEEECSCCC-
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcC---cEEEeeHHHhh
Confidence 344567999999999999887321100 0113457889999999999999999874 222 22333332211
Q ss_pred CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCc-----------ChhhHHHHHHhhc---C-CC
Q 003037 167 DEFRIAKAIIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTE-----------DYNKWETFQRCLK---N-GL 231 (854)
Q Consensus 167 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~l~~~l~---~-~~ 231 (854)
.. . . ......+...+...-..++.+|+||++..- .......+...+. . ..
T Consensus 186 ~~--~-------~------g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 186 SK--Y-------V------GEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp ---------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred cc--c-------c------chHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 10 0 0 001111122222222345689999999421 0111222333322 1 12
Q ss_pred CCcEEEEecccHH-HHhh-ccC-cceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcH-HHHHH
Q 003037 232 RGSKILVTTRKMT-VAQM-MQS-NDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPL-AAKTI 306 (854)
Q Consensus 232 ~gs~ilvTtR~~~-v~~~-~~~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPL-ai~~~ 306 (854)
....||.||.... +... ... ...+.+...+.++..+++...+........ ......|++.+.|..- +|..+
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT----QKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC----HHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHH
Confidence 3345555665432 1111 111 246888889999999999877643222111 2345678888888654 55444
No 194
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.96 E-value=0.00029 Score=73.49 Aligned_cols=182 Identities=13% Similarity=0.111 Sum_probs=100.9
Q ss_pred CCccccchhHHHHHHHHhccccc-------ccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESS-------EQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDE 168 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 168 (854)
-.+++|.++.+++|.+.+...-. -+....+.|.|+|++|+|||+||+.+++. .... ++.++ .
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~~-----~i~v~----~ 82 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIK----G 82 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCE-----EEEEC----H
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCCC-----EEEEE----h
Confidence 45699999999888887653200 00123557889999999999999999984 2222 23332 2
Q ss_pred HHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcC--------------hhhHHHHHHhhcC--CCC
Q 003037 169 FRIAKAIIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTED--------------YNKWETFQRCLKN--GLR 232 (854)
Q Consensus 169 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------------~~~~~~l~~~l~~--~~~ 232 (854)
..+.. ...+... . .+...+.......+.+|+||++..-. ......+...+.. ...
T Consensus 83 ~~l~~----~~~g~~~--~---~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 153 (301)
T 3cf0_A 83 PELLT----MWFGESE--A---NVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 153 (301)
T ss_dssp HHHHH----HHHTTCT--T---HHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTS
T ss_pred HHHHh----hhcCchH--H---HHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCC
Confidence 22222 2222111 1 12223333334568999999994200 0113445554442 223
Q ss_pred CcEEEEecccHHHH-hh-cc---CcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHH
Q 003037 233 GSKILVTTRKMTVA-QM-MQ---SNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLA 302 (854)
Q Consensus 233 gs~ilvTtR~~~v~-~~-~~---~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLa 302 (854)
+..||.||...... .. .. -...+.+...+.++-.+++......... .....+. .+++.+.|.|-+
T Consensus 154 ~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-~~~~~~~----~la~~~~g~sg~ 223 (301)
T 3cf0_A 154 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-AKDVDLE----FLAKMTNGFSGA 223 (301)
T ss_dssp SEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CSSCCHH----HHHHTCSSCCHH
T ss_pred CEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC-CccchHH----HHHHHcCCCCHH
Confidence 55677777654322 21 12 1347889999999988888776532211 1122233 355567777654
No 195
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.93 E-value=9.1e-06 Score=74.48 Aligned_cols=111 Identities=9% Similarity=0.062 Sum_probs=64.5
Q ss_pred CccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHH
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAII 176 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 176 (854)
-.++|++..++++.+.+..... ...-|.|+|.+|+|||++|+.+++... ..+.++++.. ....
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~~--~~~~----- 66 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVEY--LIDM----- 66 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTTH--HHHC-----
T ss_pred cCceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC------CeEEechhhC--ChHh-----
Confidence 3589999999998888764322 123377999999999999999987421 1222222210 0111
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCC-CCCcEEEEeccc
Q 003037 177 EALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNG-LRGSKILVTTRK 242 (854)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~ 242 (854)
...+.+. .+.-.++||++..-.......+...+... ..+.++|.||..
T Consensus 67 ----------------~~~~~~~--a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 67 ----------------PMELLQK--AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp ----------------HHHHHHH--TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred ----------------hhhHHHh--CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 0111111 22347899999776555566666665543 345788888763
No 196
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.93 E-value=8.7e-06 Score=87.05 Aligned_cols=60 Identities=18% Similarity=0.214 Sum_probs=30.9
Q ss_pred CCCCCeEEEeccCCCCCCCCchhh---cccCccEEEEecccCCCC----CC-CCCCCCCCCEEEEcCCC
Q 003037 670 PPNIESLRIEYHYIGISGWPSWIV---SLNKLKKLVLYQFYLCDT----MP-PLGKLPSLEILEIRGNW 730 (854)
Q Consensus 670 ~~~L~~L~l~~~~~~~~~lp~~~~---~l~~L~~L~L~~~~~~~~----l~-~l~~L~~L~~L~L~~~~ 730 (854)
+++|+.|.+ .++......+..+. .+++|+.|+|+.|.+... ++ .+..+++|+.|+|++|.
T Consensus 251 ~p~Lr~L~L-~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 251 FPNLKWLGI-VDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp CTTCCEEEE-ESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCcCEEeC-CCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 566777776 33332110111111 356777777776654431 22 13456777777777664
No 197
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.93 E-value=0.00026 Score=78.05 Aligned_cols=191 Identities=16% Similarity=0.127 Sum_probs=100.4
Q ss_pred ccCCccccchhHHHHHHHHhcccc------cccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccC
Q 003037 94 IDVSEVRGRDEEKNTLKSKLLCES------SEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFD 167 (854)
Q Consensus 94 ~~~~~~vGr~~~~~~l~~~L~~~~------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 167 (854)
..-..++|.++.++.|...+..+. .+.....+.|.|+|++|+|||+||+.+++. . ....++.++...
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~--~----~~~~~~~v~~~~- 203 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--A----NNSTFFSISSSD- 203 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH--C----CSSEEEEECCC--
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--c----CCCCEEEEeHHH-
Confidence 344679999999999988763210 000123467889999999999999999984 2 112234443321
Q ss_pred HHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCc-------Chh----hHHHHHHhhcC---CCCC
Q 003037 168 EFRIAKAIIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTE-------DYN----KWETFQRCLKN---GLRG 233 (854)
Q Consensus 168 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-------~~~----~~~~l~~~l~~---~~~g 233 (854)
+. ....+.. ......+. ...-..++.+|+||++..- ... ....+...+.. ...+
T Consensus 204 ---l~----~~~~g~~--~~~~~~~f---~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 271 (444)
T 2zan_A 204 ---LV----SKWLGES--EKLVKNLF---QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 271 (444)
T ss_dssp ---------------C--CCTHHHHH---HHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSS
T ss_pred ---HH----hhhcchH--HHHHHHHH---HHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCC
Confidence 11 1111111 11222222 2222357889999999532 011 11223332322 1345
Q ss_pred cEEEEecccHHHH-hh-c-cCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCC-cHHHHHHH
Q 003037 234 SKILVTTRKMTVA-QM-M-QSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGL-PLAAKTIG 307 (854)
Q Consensus 234 s~ilvTtR~~~v~-~~-~-~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~Gl-PLai~~~~ 307 (854)
..||.||...... .. . .-...+.+...+.++...++..++........ ......|++.+.|. +-.|..+.
T Consensus 272 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 272 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT----EADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp CEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 5666666543221 11 1 12346778888888888888877632211111 23345677888884 44554443
No 198
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.91 E-value=1.3e-05 Score=78.46 Aligned_cols=126 Identities=20% Similarity=0.226 Sum_probs=63.8
Q ss_pred Cccccch----hHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHH
Q 003037 97 SEVRGRD----EEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIA 172 (854)
Q Consensus 97 ~~~vGr~----~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 172 (854)
++|++.+ +.++.+..++..... ....+.+.|+|++|+|||+||+.+++. .......++|++++ .+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~~------~~~ 94 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYVP------ELF 94 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEHH------HHH
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEhH------HHH
Confidence 4566544 344555555543221 112267889999999999999999984 33333456666543 333
Q ss_pred HHHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHH--HHHH-hhcCC-CCCcEEEEeccc
Q 003037 173 KAIIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTEDYNKWE--TFQR-CLKNG-LRGSKILVTTRK 242 (854)
Q Consensus 173 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~--~l~~-~l~~~-~~gs~ilvTtR~ 242 (854)
..+...... .........+ .. .-+|||||++......|. .+.. .+... ..+.++|+||..
T Consensus 95 ~~~~~~~~~-----~~~~~~~~~~----~~-~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 95 RELKHSLQD-----QTMNEKLDYI----KK-VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp HHHHHC--------CCCHHHHHHH----HH-SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHHhcc-----chHHHHHHHh----cC-CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 443332211 1122222222 22 239999999653222221 1221 22111 234578888874
No 199
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.90 E-value=1.6e-06 Score=93.52 Aligned_cols=58 Identities=10% Similarity=0.140 Sum_probs=29.9
Q ss_pred CcccEEEecCCCCcccccccccc--ccccccccCCCceeeecCCCCcccc-----hhh-hcCCCCcEEeecCcc
Q 003037 508 TCLRTLKITGISGEKRYFRIIVE--IPKEIKKLIHLRFLKLVWLDIEELP-----ETC-CELFNVQTLEVLDCR 573 (854)
Q Consensus 508 ~~Lr~L~L~~~~~~~~~~~~i~~--lP~~i~~L~~L~~L~L~~~~i~~lP-----~~i-~~L~~L~~L~l~~~~ 573 (854)
++|+.|+|++|. +.. +......+.+|++|+|++|.+.... ..+ ...++|++|++++|.
T Consensus 101 ~~L~~L~Ls~n~--------l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~ 166 (372)
T 3un9_A 101 HALDEVNLASCQ--------LDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP 166 (372)
T ss_dssp SCEEEEECTTCC--------CCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSC
T ss_pred CCceEEEecCCC--------CCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCC
Confidence 566666666666 322 1112233456666666666654221 111 134566666666665
No 200
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.90 E-value=6.9e-05 Score=90.14 Aligned_cols=155 Identities=18% Similarity=0.239 Sum_probs=82.3
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccc---ccccc-C-eeEEEEeCCccCHHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNND---VINHF-E-KRIWVCVSDPFDEFR 170 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~f-~-~~~wv~~s~~~~~~~ 170 (854)
-..+|||+++++++...|... ....+.|+|.+|+||||+|+.+++... +.... . .+++++++.-..
T Consensus 169 ld~viGr~~~i~~l~~~l~~~------~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~--- 239 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRR------TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA--- 239 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCS------SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--------
T ss_pred CcccCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc---
Confidence 356899999999999999743 233468999999999999999987421 00011 1 233333322100
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHhc--CCeEEEEEecCCCcC--------hhhHHHHHHhhcCCCCCcEEEEec
Q 003037 171 IAKAIIEALEGSTPSLGELNSLLERIYASIA--RKKFLLVLDDVWTED--------YNKWETFQRCLKNGLRGSKILVTT 240 (854)
Q Consensus 171 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~ilvTt 240 (854)
+. ....+.+.....+.+.+. +++.+|++|++..-. .+....+...+..+ +..+|.+|
T Consensus 240 ----------g~-~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~--~i~~I~at 306 (854)
T 1qvr_A 240 ----------GA-KYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG--ELRLIGAT 306 (854)
T ss_dssp -----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTT--CCCEEEEE
T ss_pred ----------cC-ccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCC--CeEEEEec
Confidence 00 011122333333333332 368899999995421 11112244444332 34456555
Q ss_pred ccHHHH-----hh-ccCcceEecCCCCHHHHHHHHHHH
Q 003037 241 RKMTVA-----QM-MQSNDVILIRELSEQACWSLFEQL 272 (854)
Q Consensus 241 R~~~v~-----~~-~~~~~~~~l~~L~~~e~~~l~~~~ 272 (854)
...... .. ......+.+.+++.++..+++...
T Consensus 307 ~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 307 TLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp CHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred CchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 443321 11 122346899999999999988643
No 201
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.85 E-value=7.2e-05 Score=78.64 Aligned_cols=137 Identities=17% Similarity=0.271 Sum_probs=75.8
Q ss_pred CccccchhHHHHHHHHhccccc---ccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHH
Q 003037 97 SEVRGRDEEKNTLKSKLLCESS---EQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAK 173 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 173 (854)
..++|.+..++.+...+..... ........+.|+|++|+|||++|+.+++. ....-...+.+.++...... ...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~~~~~-~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-AVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGCCSTT-HHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeecccccccc-cHH
Confidence 3578999999988888765321 00122467999999999999999999884 22211234455554332211 111
Q ss_pred HHHHHhcCCCC--CCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCC-----------CCcEEEEec
Q 003037 174 AIIEALEGSTP--SLGELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGL-----------RGSKILVTT 240 (854)
Q Consensus 174 ~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTt 240 (854)
. .++.... .......+...+. ....-+++||++..-.......+...+.... ..+.||.||
T Consensus 94 ~---l~g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~tt 167 (311)
T 4fcw_A 94 R---LIGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTS 167 (311)
T ss_dssp H---HHCCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEE
T ss_pred H---hcCCCCccccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEec
Confidence 1 1222111 0000011222221 2344699999997666666677777665332 233467776
Q ss_pred cc
Q 003037 241 RK 242 (854)
Q Consensus 241 R~ 242 (854)
..
T Consensus 168 n~ 169 (311)
T 4fcw_A 168 NL 169 (311)
T ss_dssp ST
T ss_pred cc
Confidence 64
No 202
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.80 E-value=0.00017 Score=80.08 Aligned_cols=185 Identities=10% Similarity=0.093 Sum_probs=101.4
Q ss_pred CccccchhHHHHHHHHhcccccc-------cCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHH
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSE-------QQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEF 169 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 169 (854)
..++|.+..+++|.+.+...... +....+-|.|+|++|+|||++|+.+++. ....| +.++.+.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~f---v~vn~~~----- 273 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE----- 273 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSEE---EEEEHHH-----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCCE---EEEEchH-----
Confidence 46899999999998887542000 0123456889999999999999999884 22222 3333211
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCc--------C---hhhHHHHHHhhcC--CCCCcEE
Q 003037 170 RIAKAIIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTE--------D---YNKWETFQRCLKN--GLRGSKI 236 (854)
Q Consensus 170 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--------~---~~~~~~l~~~l~~--~~~gs~i 236 (854)
+ . .... ..........+.....+++.+|+||++..- . ......+...+.. ...+.+|
T Consensus 274 -l----~----~~~~-g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 274 -I----M----SKLA-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp -H----H----TSCT-THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred -h----h----hhhc-chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 1 1 1111 111122233334444567889999998210 1 1223345554442 2234456
Q ss_pred EEecccHH-HHhhc----cCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCC-cHHHHHH
Q 003037 237 LVTTRKMT-VAQMM----QSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGL-PLAAKTI 306 (854)
Q Consensus 237 lvTtR~~~-v~~~~----~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~Gl-PLai~~~ 306 (854)
|.||.... +...+ .-...+.+...+.++-.+++..++..... .....+ .++++.+.|. +-.+..+
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~~~l----~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVDL----EQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTTCCH----HHHHHTCTTCCHHHHHHH
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cchhhH----HHHHHHccCCcHHHHHHH
Confidence 66665442 22222 11346889999999999999887642211 122223 3455666664 4444444
No 203
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.80 E-value=6e-05 Score=77.18 Aligned_cols=158 Identities=15% Similarity=0.116 Sum_probs=81.1
Q ss_pred CccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHH
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAII 176 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 176 (854)
..++|++..+.++.+.+..... ....|.|+|.+|+|||++|+.+++... ..-...+.++++.. .. ..+..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~~~--~~~~~~~~v~~~~~-~~-~~~~~-- 75 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYLSS--RWQGPFISLNCAAL-NE-NLLDS-- 75 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHTST--TTTSCEEEEEGGGS-CH-HHHHH--
T ss_pred ccceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhcC--ccCCCeEEEecCCC-Ch-hHHHH--
Confidence 4689999999988877754332 224577999999999999999998421 11112344555442 22 22221
Q ss_pred HHhcCCCCCC-cc-HHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCC-----------CCCcEEEEecccH
Q 003037 177 EALEGSTPSL-GE-LNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNG-----------LRGSKILVTTRKM 243 (854)
Q Consensus 177 ~~l~~~~~~~-~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvTtR~~ 243 (854)
.+.+..... .. .......+. ....-+|+||++..-.......+...+... ..+.+||.||...
T Consensus 76 -~l~g~~~~~~~g~~~~~~~~l~---~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~ 151 (265)
T 2bjv_A 76 -ELFGHEAGAFTGAQKRHPGRFE---RADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNAD 151 (265)
T ss_dssp -HHHCCC---------CCCCHHH---HTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSC
T ss_pred -HhcCCcccccccccccccchhh---hcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcC
Confidence 121111000 00 000000011 123458999999765555556666665532 1356788887652
Q ss_pred H--H----------HhhccCcceEecCCCCH--HHHHHHH
Q 003037 244 T--V----------AQMMQSNDVILIRELSE--QACWSLF 269 (854)
Q Consensus 244 ~--v----------~~~~~~~~~~~l~~L~~--~e~~~l~ 269 (854)
. . ...+. ...+.+++|.+ ++...++
T Consensus 152 ~~~~~~~~~~~~~L~~Rl~-~~~i~lp~L~~R~~di~~l~ 190 (265)
T 2bjv_A 152 LPAMVNEGTFRADLLDALA-FDVVQLPPLRERESDIMLMA 190 (265)
T ss_dssp HHHHHHHTSSCHHHHHHHC-SEEEECCCGGGCHHHHHHHH
T ss_pred HHHHHHcCCccHHHHHhhc-CcEEeCCChhhhhHHHHHHH
Confidence 1 1 11111 13577888876 5554443
No 204
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.71 E-value=0.00011 Score=76.71 Aligned_cols=159 Identities=13% Similarity=0.052 Sum_probs=85.7
Q ss_pred CccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHH
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAII 176 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 176 (854)
+.++|++..+.++.+.+..... ....|.|+|.+|+|||++|+.+++..... . ...+.++++... ..++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~-~-~~~v~v~~~~~~--~~l~~~-- 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHACSARS-D-RPLVTLNCAALN--ESLLES-- 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHHHSSCS-S-SCCCEEECSSCC--HHHHHH--
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHHhCccc-C-CCeEEEeCCCCC--hHHHHH--
Confidence 4589999999999888765432 23347799999999999999998842111 1 122344544322 222222
Q ss_pred HHhcCCCCCCcc--HHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCC-----------CCcEEEEecccH
Q 003037 177 EALEGSTPSLGE--LNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGL-----------RGSKILVTTRKM 243 (854)
Q Consensus 177 ~~l~~~~~~~~~--~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~~ 243 (854)
.+.+....... .......+.. ...-+|+||++..-.......+...+.... ...+||.||...
T Consensus 72 -~lfg~~~g~~tg~~~~~~g~~~~---a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~ 147 (304)
T 1ojl_A 72 -ELFGHEKGAFTGADKRREGRFVE---ADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRD 147 (304)
T ss_dssp -HHTCCCSSCCC---CCCCCHHHH---HTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSC
T ss_pred -HhcCccccccCchhhhhcCHHHh---cCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCcc
Confidence 22221110000 0000011111 123478999997765555666776665431 346788877653
Q ss_pred H---HH---------hhccCcceEecCCCC--HHHHHHHHH
Q 003037 244 T---VA---------QMMQSNDVILIRELS--EQACWSLFE 270 (854)
Q Consensus 244 ~---v~---------~~~~~~~~~~l~~L~--~~e~~~l~~ 270 (854)
. +. ..+. ...+.+++|. .+|...++.
T Consensus 148 l~~~v~~g~fr~~L~~Rl~-~~~i~lPpL~eR~edi~~l~~ 187 (304)
T 1ojl_A 148 LAEEVSAGRFRQDLYYRLN-VVAIEMPSLRQRREDIPLLAD 187 (304)
T ss_dssp HHHHHHHTSSCHHHHHHHS-SEEEECCCSGGGGGGHHHHHH
T ss_pred HHHHHHhCCcHHHHHhhcC-eeEEeccCHHHhHhhHHHHHH
Confidence 1 11 1111 3357788888 455555544
No 205
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.71 E-value=0.00021 Score=79.25 Aligned_cols=97 Identities=11% Similarity=0.038 Sum_probs=60.2
Q ss_pred EEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEec----------c----cHH-HHhhccCcceEecCCCCHHHHHHHH
Q 003037 205 FLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTT----------R----KMT-VAQMMQSNDVILIRELSEQACWSLF 269 (854)
Q Consensus 205 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt----------R----~~~-v~~~~~~~~~~~l~~L~~~e~~~l~ 269 (854)
-++++|++..-+.+.+..+...+...... .+|+.| . ... ..+..+....+.+.+++.++..+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 39999999776667788888887766555 344343 2 111 1112233446799999999999999
Q ss_pred HHHhcCCCCCCCchHHHHHHHHHHhhc-CCCcHHHHHH
Q 003037 270 EQLAFFGRPRSECEQLIEIGRKIVGKC-KGLPLAAKTI 306 (854)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~I~~~~-~GlPLai~~~ 306 (854)
...+........ .+....|++.+ +|.|..+..+
T Consensus 376 ~~~~~~~~~~~~----~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 376 KIRAQTEGINIS----EEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHTCCBC----HHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHhCCCCC----HHHHHHHHHHccCCCHHHHHHH
Confidence 876531111111 33456677777 7888755444
No 206
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.69 E-value=0.00022 Score=79.29 Aligned_cols=145 Identities=16% Similarity=0.168 Sum_probs=78.0
Q ss_pred CccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhcccccccc-----Ce--eEEEEeCCccCHH
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHF-----EK--RIWVCVSDPFDEF 169 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-----~~--~~wv~~s~~~~~~ 169 (854)
+.+|||+++++++...|.... ..-+.|+|++|+|||++|+.+++. +...+ .. .+.++.+.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~~----- 246 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDMGT----- 246 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC---------
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEEeeCCc-----
Confidence 469999999999999997532 234579999999999999999874 21111 11 12222220
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccHHHHh--
Q 003037 170 RIAKAIIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKMTVAQ-- 247 (854)
Q Consensus 170 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~-- 247 (854)
...+.. ...... .+...-..++.+|++| . ..+....+...+.. ...++|.+|.......
T Consensus 247 --------~~~g~~--e~~~~~---~~~~~~~~~~~iLfiD-~---~~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~ 307 (468)
T 3pxg_A 247 --------KYRGEF--EDRLKK---VMDEIRQAGNIILFID-A---AIDASNILKPSLAR--GELQCIGATTLDEYRKYI 307 (468)
T ss_dssp ----------------CTTHHH---HHHHHHTCCCCEEEEC-C-----------CCCTTS--SSCEEEEECCTTTTHHHH
T ss_pred --------cccchH--HHHHHH---HHHHHHhcCCeEEEEe-C---chhHHHHHHHhhcC--CCEEEEecCCHHHHHHHh
Confidence 000000 011122 2222223567899999 1 11222223332322 2345666555443111
Q ss_pred -----hccCcceEecCCCCHHHHHHHHHHHh
Q 003037 248 -----MMQSNDVILIRELSEQACWSLFEQLA 273 (854)
Q Consensus 248 -----~~~~~~~~~l~~L~~~e~~~l~~~~~ 273 (854)
.......+.+.+.+.++..+++...+
T Consensus 308 ~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 308 EKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp TTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 11223479999999999999998754
No 207
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.67 E-value=0.00086 Score=68.09 Aligned_cols=186 Identities=12% Similarity=0.073 Sum_probs=94.6
Q ss_pred cCCccccchhHHHHHHHHhcc---cccc---cCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCH
Q 003037 95 DVSEVRGRDEEKNTLKSKLLC---ESSE---QQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDE 168 (854)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~---~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 168 (854)
.-.+++|.+..++++.+.+.. ...- .....+-+.|+|++|+||||||+.+++. ....| +.++.+.-.+
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~i~~~~~~~- 83 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSDFVE- 83 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCCE---EEECSCSSTT-
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCCE---EEEeHHHHHH-
Confidence 346799999888777654321 1100 0012334889999999999999999884 22222 3333221110
Q ss_pred HHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCc----------Ch----hhHHHHHHhhcC--CCC
Q 003037 169 FRIAKAIIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTE----------DY----NKWETFQRCLKN--GLR 232 (854)
Q Consensus 169 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------~~----~~~~~l~~~l~~--~~~ 232 (854)
.. .......+...+.......+.++++|++..- .. .....+...+.. ...
T Consensus 84 -------------~~-~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (257)
T 1lv7_A 84 -------------MF-VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 149 (257)
T ss_dssp -------------SC-CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSS
T ss_pred -------------Hh-hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCC
Confidence 00 0111222233333333456789999998210 00 122233333332 223
Q ss_pred CcEEEEecccHH-HHhhc-c---CcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCC-CcHHHHH
Q 003037 233 GSKILVTTRKMT-VAQMM-Q---SNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKG-LPLAAKT 305 (854)
Q Consensus 233 gs~ilvTtR~~~-v~~~~-~---~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~G-lPLai~~ 305 (854)
+..||.||.... +.... . -...+.+...+.++-.+++..+...... ..... ...+++.+.| .+--+..
T Consensus 150 ~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l-~~~~~----~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 150 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPL-APDID----AAIIARGTPGFSGADLAN 223 (257)
T ss_dssp CEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHTCTTCCHHHHHH
T ss_pred CEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCC-Ccccc----HHHHHHHcCCCCHHHHHH
Confidence 455666665543 21111 1 1346778888888888888766532111 11111 2346677777 6654443
No 208
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.65 E-value=1.2e-05 Score=81.47 Aligned_cols=81 Identities=11% Similarity=0.104 Sum_probs=63.2
Q ss_pred hcCCCcccEEEecCCCCcccccccccc---ccccccccCCCceeeecCCCCcccchhhhcCC--CCcEEeecCccccccc
Q 003037 504 FDQLTCLRTLKITGISGEKRYFRIIVE---IPKEIKKLIHLRFLKLVWLDIEELPETCCELF--NVQTLEVLDCRSFRRL 578 (854)
Q Consensus 504 ~~~l~~Lr~L~L~~~~~~~~~~~~i~~---lP~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~--~L~~L~l~~~~~l~~l 578 (854)
..++++|+.|+|++|. +.. +|..++.+++|++|+|++|.|+.+ ..+..+. +|++|++.+|.....+
T Consensus 166 ~~~l~~L~~L~Ls~N~--------l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 166 EENIPELLSLNLSNNR--------LYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTF 236 (267)
T ss_dssp HHHCTTCCEEECTTSC--------CCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGC
T ss_pred HhhCCCCCEEECCCCC--------CCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCcccc
Confidence 3678999999999998 554 456778999999999999999887 3456666 9999999999843445
Q ss_pred cc-------ccccCCCCcccCc
Q 003037 579 PQ-------GFGKLVNLRNLSK 593 (854)
Q Consensus 579 p~-------~i~~L~~L~~L~~ 593 (854)
|. .+..+++|+.|..
T Consensus 237 ~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 237 RDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp SSHHHHHHHHHHHCTTCCEESS
T ss_pred CcchhHHHHHHHHCcccCeECC
Confidence 52 2567888888844
No 209
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.65 E-value=5.7e-05 Score=69.48 Aligned_cols=87 Identities=16% Similarity=0.038 Sum_probs=50.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCC
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIARK 203 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 203 (854)
...++|+|..|+|||||++.++......+ + .++++........ .+..+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g-~-~~~~~~~~~~~~~------------------------------~~~~~ 83 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAG-K-NAAYIDAASMPLT------------------------------DAAFE 83 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTT-C-CEEEEETTTSCCC------------------------------GGGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcC-C-cEEEEcHHHhhHH------------------------------HHHhC
Confidence 34788999999999999999998432211 1 2566655432211 01234
Q ss_pred eEEEEEecCCCcChhhHHHHHHhhcCC-CCCc-EEEEeccc
Q 003037 204 KFLLVLDDVWTEDYNKWETFQRCLKNG-LRGS-KILVTTRK 242 (854)
Q Consensus 204 ~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs-~ilvTtR~ 242 (854)
.-+|||||+.......-+.+...+... ..|. +||+||+.
T Consensus 84 ~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 84 AEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp CSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 568999998654333333343333211 1233 48888874
No 210
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.64 E-value=0.00037 Score=73.08 Aligned_cols=153 Identities=12% Similarity=0.099 Sum_probs=84.0
Q ss_pred CccccchhHHHHHHHHhcccccc--------cCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccC-
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSE--------QQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFD- 167 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~--------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~- 167 (854)
..++|+++.++.+...+...... .......+.|+|++|+|||++|+.+++. ... ..+.++.+...+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--l~~---~~~~i~~~~~~~~ 89 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL--ANA---PFIKVEATKFTEV 89 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGSSC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEcchhcccC
Confidence 46899999999998877541000 0112456789999999999999999884 222 223444433211
Q ss_pred ------HHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhh------------HHHHHHhhcC
Q 003037 168 ------EFRIAKAIIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTEDYNK------------WETFQRCLKN 229 (854)
Q Consensus 168 ------~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------------~~~l~~~l~~ 229 (854)
....+..+..... . .+.. .+.+.+|+||++..-.... ...+...+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~----~---------~~~~--~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~ 154 (310)
T 1ofh_A 90 GYVGKEVDSIIRDLTDSAG----G---------AIDA--VEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEG 154 (310)
T ss_dssp CSGGGSTTHHHHHHHHTTT----T---------CHHH--HHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHC
T ss_pred CccCccHHHHHHHHHHHhh----H---------HHhh--ccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcC
Confidence 1112222221110 0 0001 1236799999995422221 4455555543
Q ss_pred C----------CCCcEEEEecc----cH-----HHHhhccCcceEecCCCCHHHHHHHHHH
Q 003037 230 G----------LRGSKILVTTR----KM-----TVAQMMQSNDVILIRELSEQACWSLFEQ 271 (854)
Q Consensus 230 ~----------~~gs~ilvTtR----~~-----~v~~~~~~~~~~~l~~L~~~e~~~l~~~ 271 (854)
. ..+..+|.|+. .. .+...+ ...+.+.+++.++..+++..
T Consensus 155 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~--~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 155 STVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRL--PIRVELTALSAADFERILTE 213 (310)
T ss_dssp CEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTC--CEEEECCCCCHHHHHHHHHS
T ss_pred CeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhC--CceEEcCCcCHHHHHHHHHh
Confidence 2 12445565541 11 111111 24689999999999888874
No 211
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.62 E-value=0.00055 Score=73.98 Aligned_cols=179 Identities=17% Similarity=0.203 Sum_probs=91.4
Q ss_pred CCccccchhHHHHHHHHhcccccc-------cCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSE-------QQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDE 168 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 168 (854)
-.++.|-++.+++|.+.+.-.-.. +...++-|.++|++|+|||+||+++++. ....| +.++.++-.+
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~--~~~~~---~~v~~~~l~~- 244 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS--TKAAF---IRVNGSEFVH- 244 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH--HTCEE---EEEEGGGTCC-
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCCe---EEEecchhhc-
Confidence 346889999988887765421100 0234667889999999999999999984 33222 3344332111
Q ss_pred HHHHHHHHHHhcCCCCCCccHHHHHHHHH-HHhcCCeEEEEEecCCC----------c-Ch---hhHHHHHHhhcC--CC
Q 003037 169 FRIAKAIIEALEGSTPSLGELNSLLERIY-ASIARKKFLLVLDDVWT----------E-DY---NKWETFQRCLKN--GL 231 (854)
Q Consensus 169 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~----------~-~~---~~~~~l~~~l~~--~~ 231 (854)
.. ....+.....+. ..-...++++++|++.. . +. .....+...+.. ..
T Consensus 245 -------------~~--~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~ 309 (428)
T 4b4t_K 245 -------------KY--LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS 309 (428)
T ss_dssp -------------SS--CSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS
T ss_pred -------------cc--cchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCC
Confidence 00 111122222222 22245689999999831 0 10 112334443332 23
Q ss_pred CCcEEEEecccHHHHh-h-ccC---cceEecCCCCHHHH-HHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCc
Q 003037 232 RGSKILVTTRKMTVAQ-M-MQS---NDVILIRELSEQAC-WSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLP 300 (854)
Q Consensus 232 ~gs~ilvTtR~~~v~~-~-~~~---~~~~~l~~L~~~e~-~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlP 300 (854)
.+..||.||....... . ..+ ...+.+..++..++ ..+|..+... .......++. .|++++.|.-
T Consensus 310 ~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~-~~l~~~~dl~----~lA~~t~G~s 379 (428)
T 4b4t_K 310 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASK-MSLAPEADLD----SLIIRNDSLS 379 (428)
T ss_dssp CSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHS-SCBCTTCCHH----HHHHHTTTCC
T ss_pred CCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcC-CCCCcccCHH----HHHHHCCCCC
Confidence 4445666775443211 1 122 34677766765554 4455554432 1111222333 4566676653
No 212
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.62 E-value=1.8e-05 Score=74.06 Aligned_cols=40 Identities=18% Similarity=0.227 Sum_probs=28.3
Q ss_pred CccceeeecccccCcCCC-cCCCCCCCcCEEEEecCcchHH
Q 003037 789 PQLKKLEFERCTELKSVP-EKLLRSTTLEELSIVECPILVE 828 (854)
Q Consensus 789 ~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~ 828 (854)
++|++|+|++|++++.-- ..+..+++|++|+|++||.++.
T Consensus 114 ~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 114 KSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 478888888887766410 1244578899999999987653
No 213
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.59 E-value=0.00064 Score=80.82 Aligned_cols=157 Identities=17% Similarity=0.188 Sum_probs=87.9
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccc---ccc-ccCeeEEE-EeCCccCHHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNND---VIN-HFEKRIWV-CVSDPFDEFR 170 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~-~f~~~~wv-~~s~~~~~~~ 170 (854)
-..++||+++++++.+.|... ...-+.|+|.+|+|||++|+.+++... +.. .....+|. ..+.-
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l----- 253 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL----- 253 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-------
T ss_pred CCCccCCHHHHHHHHHHHhcc------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH-----
Confidence 356899999999999999743 234467999999999999999987421 111 11223321 11110
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHhc-CCeEEEEEecCCCc--------ChhhHHHHHHhhcCCCCCcEEEEecc
Q 003037 171 IAKAIIEALEGSTPSLGELNSLLERIYASIA-RKKFLLVLDDVWTE--------DYNKWETFQRCLKNGLRGSKILVTTR 241 (854)
Q Consensus 171 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~gs~ilvTtR 241 (854)
+... ......+.....+.+.+. .++.+|++|++..- .......+...+.. ..+.++|.+|.
T Consensus 254 --------~~~~-~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~ 323 (758)
T 1r6b_X 254 --------LAGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTT 323 (758)
T ss_dssp ---------CCC-CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEEC
T ss_pred --------hccc-cccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeC
Confidence 1111 112234444444444443 45789999999642 11111112221212 23456666666
Q ss_pred cHHHHhhc-------cCcceEecCCCCHHHHHHHHHHHh
Q 003037 242 KMTVAQMM-------QSNDVILIRELSEQACWSLFEQLA 273 (854)
Q Consensus 242 ~~~v~~~~-------~~~~~~~l~~L~~~e~~~l~~~~~ 273 (854)
........ .....+.+.+.+.++..+++....
T Consensus 324 ~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred chHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 54432111 112368899999999988887543
No 214
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.58 E-value=0.0013 Score=69.91 Aligned_cols=178 Identities=16% Similarity=0.167 Sum_probs=97.1
Q ss_pred CccccchhHHHHHHHHhccccc-------ccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHH
Q 003037 97 SEVRGRDEEKNTLKSKLLCESS-------EQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEF 169 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 169 (854)
+++.|-++.+++|.+.+.-+-. -+...++-|.++|++|+|||.||+++++. ....| +.|..+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~s-- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCKF---IRVSGAELVQ-- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCEE---EEEEGGGGSC--
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCCc---eEEEhHHhhc--
Confidence 4578999988888776542110 00234567889999999999999999984 33333 3343332111
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHH-hcCCeEEEEEecCCCc--------Ch------hhHHHHHHhhcC--CCC
Q 003037 170 RIAKAIIEALEGSTPSLGELNSLLERIYAS-IARKKFLLVLDDVWTE--------DY------NKWETFQRCLKN--GLR 232 (854)
Q Consensus 170 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~--------~~------~~~~~l~~~l~~--~~~ 232 (854)
.. ..+.+.....+... -...+++|+||++..- .. .....+...+.. ...
T Consensus 221 ------------k~--vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 286 (405)
T 4b4t_J 221 ------------KY--IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSK 286 (405)
T ss_dssp ------------SS--TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCC
T ss_pred ------------cc--cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCC
Confidence 11 11122222222222 2456899999998531 00 012234443432 233
Q ss_pred CcEEEEecccHHHHh-h-c---cCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCc
Q 003037 233 GSKILVTTRKMTVAQ-M-M---QSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLP 300 (854)
Q Consensus 233 gs~ilvTtR~~~v~~-~-~---~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlP 300 (854)
+..||.||...+... . . .-+..+.+..-+.++-.++|..+...-. ....-++ ..|++.+.|.-
T Consensus 287 ~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~-l~~dvdl----~~lA~~t~G~S 354 (405)
T 4b4t_J 287 NIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMN-LTRGINL----RKVAEKMNGCS 354 (405)
T ss_dssp CEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSB-CCSSCCH----HHHHHHCCSCC
T ss_pred CeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCC-CCccCCH----HHHHHHCCCCC
Confidence 445566665443221 1 1 2256888888888888888877653211 1222233 34666777754
No 215
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.57 E-value=2.3e-05 Score=84.40 Aligned_cols=126 Identities=12% Similarity=0.022 Sum_probs=74.2
Q ss_pred CceEEEEeeeCCCCC--C-cccccCCCceEEEEecCCCCcccCchhh----hh-cCCCcccEEEecCCCCcccccccccc
Q 003037 459 EKVRHSMLKLGYDSF--P-DSIFSAKKLRSFLIHSTNKDLISPVLPV----LF-DQLTCLRTLKITGISGEKRYFRIIVE 530 (854)
Q Consensus 459 ~~~r~l~l~~~~~~~--~-~~~~~~~~Lr~L~l~~~~~~~~~~~l~~----~~-~~l~~Lr~L~L~~~~~~~~~~~~i~~ 530 (854)
..++.+.+..+.... . .-...+++|++|++.+|. +...... .+ ...+.|+.|+|++|...... ...
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~---l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~---~~~ 174 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS---LGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAG---VAV 174 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC---CCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHH---HHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC---CCHHHHHHHHHHHHhcCCccceeeCCCCCCChHH---HHH
Confidence 567777777665431 1 111234567888888776 3221112 22 34677888888888721000 122
Q ss_pred ccccccccCCCceeeecCCCCc-----ccchhhhcCCCCcEEeecCccccc-----ccccccccCCCCccc
Q 003037 531 IPKEIKKLIHLRFLKLVWLDIE-----ELPETCCELFNVQTLEVLDCRSFR-----RLPQGFGKLVNLRNL 591 (854)
Q Consensus 531 lP~~i~~L~~L~~L~L~~~~i~-----~lP~~i~~L~~L~~L~l~~~~~l~-----~lp~~i~~L~~L~~L 591 (854)
++..+..+++|++|+|++|.|. .++..+...++|++|++++|. +. .++..+...++|++|
T Consensus 175 l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L 244 (372)
T 3un9_A 175 LMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELL 244 (372)
T ss_dssp HHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEE
T ss_pred HHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEE
Confidence 5556667778888888888765 345566677788888888876 44 233444455666666
No 216
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.56 E-value=0.0009 Score=72.41 Aligned_cols=179 Identities=17% Similarity=0.210 Sum_probs=97.6
Q ss_pred CCccccchhHHHHHHHHhccccc-------ccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESS-------EQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDE 168 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 168 (854)
-+++.|-++.++.|.+.+.-+-. .+...++-|.++|++|+|||+||+++++. ....| +.++.+.-.+
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~~---~~v~~s~l~s- 253 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGANF---IFSPASGIVD- 253 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGTCC-
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehhhhcc-
Confidence 34678999888888776543110 00234677889999999999999999984 33222 3343332111
Q ss_pred HHHHHHHHHHhcCCCCCCccHHHHHHHHHH-HhcCCeEEEEEecCCCc-----------Ch---hhHHHHHHhhcC--CC
Q 003037 169 FRIAKAIIEALEGSTPSLGELNSLLERIYA-SIARKKFLLVLDDVWTE-----------DY---NKWETFQRCLKN--GL 231 (854)
Q Consensus 169 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~-----------~~---~~~~~l~~~l~~--~~ 231 (854)
.. ....+.....+.. .-...+++|++|++..- +. .....++..+.. ..
T Consensus 254 -------------k~--~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 318 (437)
T 4b4t_L 254 -------------KY--IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL 318 (437)
T ss_dssp -------------SS--SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT
T ss_pred -------------cc--chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC
Confidence 11 1112222222222 22467899999998431 00 112234444432 22
Q ss_pred CCcEEEEecccHHHHhh--ccC---cceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCc
Q 003037 232 RGSKILVTTRKMTVAQM--MQS---NDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLP 300 (854)
Q Consensus 232 ~gs~ilvTtR~~~v~~~--~~~---~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlP 300 (854)
.+..||.||-....... ... ...+.+..-+.++-.++|..+...-.. ....++ ..|++.+.|+-
T Consensus 319 ~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 319 GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp TSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCCH----HHHHHTCCSCC
T ss_pred CCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccCH----HHHHHhCCCCC
Confidence 44567777765443222 122 346778777778878888766532211 122223 34666777754
No 217
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.55 E-value=0.00012 Score=87.04 Aligned_cols=156 Identities=17% Similarity=0.302 Sum_probs=90.8
Q ss_pred CccccchhHHHHHHHHhcccccc---cCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHH
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSE---QQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAK 173 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 173 (854)
..++|.+..++.+...+.....+ +......+.++|++|+|||++|+.+++. ....-...+.++++...+....
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~~~~-- 566 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEKHST-- 566 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSSCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhccccccc--
Confidence 46899999999888887654321 0122347899999999999999999884 2121223455555432211000
Q ss_pred HHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCC-----------CCCcEEEEeccc
Q 003037 174 AIIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNG-----------LRGSKILVTTRK 242 (854)
Q Consensus 174 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvTtR~ 242 (854)
. ...+...++ ....-+|+||++..........+...+..+ ....+||+||..
T Consensus 567 -----------~---~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 567 -----------S---GGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp -----------C------CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred -----------c---cchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 0 011111111 123459999999766666677777776542 235678888872
Q ss_pred -----HHH----Hhhc-----cC-cceEecCCCCHHHHHHHHHHHh
Q 003037 243 -----MTV----AQMM-----QS-NDVILIRELSEQACWSLFEQLA 273 (854)
Q Consensus 243 -----~~v----~~~~-----~~-~~~~~l~~L~~~e~~~l~~~~~ 273 (854)
..+ ...+ .. ...+.+.+++.++..+++....
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 111 1111 11 2478899999988888876643
No 218
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.00074 Score=73.01 Aligned_cols=179 Identities=15% Similarity=0.135 Sum_probs=94.8
Q ss_pred CCccccchhHHHHHHHHhccccc-------ccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESS-------EQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDE 168 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 168 (854)
-..+.|-++.+++|.+.+..+-. .+...++-|.++|++|+|||.||+++++. ....| +.++.+.-.
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~-- 252 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNATF---LKLAAPQLV-- 252 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGGC--
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCCE---EEEehhhhh--
Confidence 34688999999888776432110 01234677889999999999999999984 33222 333332211
Q ss_pred HHHHHHHHHHhcCCCCCCccHHHHHHHHHHH-hcCCeEEEEEecCCC-------cCh---h----hHHHHHHhhcCC--C
Q 003037 169 FRIAKAIIEALEGSTPSLGELNSLLERIYAS-IARKKFLLVLDDVWT-------EDY---N----KWETFQRCLKNG--L 231 (854)
Q Consensus 169 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~-------~~~---~----~~~~l~~~l~~~--~ 231 (854)
... ....+.....+... -...+++|++|++.. ... . ....+...+... .
T Consensus 253 ------------~~~--vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~ 318 (434)
T 4b4t_M 253 ------------QMY--IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD 318 (434)
T ss_dssp ------------SSC--SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS
T ss_pred ------------hcc--cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC
Confidence 111 11122222222222 234689999999831 000 1 112244444332 2
Q ss_pred CCcEEEEecccHHHHhh-c-c---CcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCc
Q 003037 232 RGSKILVTTRKMTVAQM-M-Q---SNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLP 300 (854)
Q Consensus 232 ~gs~ilvTtR~~~v~~~-~-~---~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlP 300 (854)
.+..||.||........ + . -...+.++.-+.++-.++|..+...-.. ...-++ ..|++.+.|+-
T Consensus 319 ~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~dvdl----~~lA~~t~G~s 387 (434)
T 4b4t_M 319 DRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT-DDDINW----QELARSTDEFN 387 (434)
T ss_dssp CSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB-CSCCCH----HHHHHHCSSCC
T ss_pred CCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC-CCcCCH----HHHHHhCCCCC
Confidence 34455657755433221 1 1 1346788877888878888765432111 112223 34566777653
No 219
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.47 E-value=0.0054 Score=66.56 Aligned_cols=298 Identities=12% Similarity=0.114 Sum_probs=145.0
Q ss_pred cccCC-CceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccccc-ccccccCCCceeeecCCCCccc
Q 003037 477 IFSAK-KLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIP-KEIKKLIHLRFLKLVWLDIEEL 554 (854)
Q Consensus 477 ~~~~~-~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP-~~i~~L~~L~~L~L~~~~i~~l 554 (854)
|.++. .|+++.+... +..+-...|.+|.+|+.+.+..+.- ..+..++ ..+..+.+|+.+.+..+ ++.+
T Consensus 59 F~~~~~~L~sI~iP~s----vt~Ig~~AF~~C~~L~~i~~~~n~p-----~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPDT----VTEIGSNAFYNCTSLKRVTIQDNKP-----SCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp TTTCCSCCCEEEECTT----CCEECTTTTTTCTTCCEEEEGGGCC-----CCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred ccCCCCcCEEEEECCC----eeEEhHHHhhCCccCceEeecCCCC-----CeeeEechhhchhcccceeeccCCc-ccee
Confidence 44453 4777777543 3444456688888888888866420 0034443 34556677777766544 4555
Q ss_pred ch-hhhcCCCCcEEeecCcccccccccc-cccCCCCcccCceee-cCCCCCCcccccccccCCceeEEecccCCCChhHH
Q 003037 555 PE-TCCELFNVQTLEVLDCRSFRRLPQG-FGKLVNLRNLSKFIV-SRSGGSKLEDLRQLKHLRGSLKIQGLGNVRDADEA 631 (854)
Q Consensus 555 P~-~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~~~~~-~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~ 631 (854)
+. .+..+.+|+.+.+... +..++.. +..+.+|+.+..-.. ..-+...+. -..|+ .+.+.. .+. ..
T Consensus 129 ~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~~~~I~~~aF~-~~~l~----~i~ip~--~~~---~i 196 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDSVTAIEERAFT-GTALT----QIHIPA--KVT---RI 196 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTTCCEECTTTTT-TCCCS----EEEECT--TCC---EE
T ss_pred hhhhhhhhcccccccccce--eeeecccceecccccccccccceeeEecccccc-cccee----EEEECC--ccc---cc
Confidence 43 3566777777777543 3344332 334455544411000 000000000 11122 222211 000 01
Q ss_pred HHhhccCCCCCCcEEEEecCCCCCCCc------chHHHhhhCCCCCCCCeEEEeccCCCCCCCCchhhcccCccEEEEec
Q 003037 632 KSAELEKKKNLLDLVLSFDGGQRIGDV------NDKAIIEALQPPPNIESLRIEYHYIGISGWPSWIVSLNKLKKLVLYQ 705 (854)
Q Consensus 632 ~~~~l~~~~~L~~L~l~~~~~~~~~~~------~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~ 705 (854)
....+..+.+|................ ..............+..+.+ ....... -...+..+.+|+.+.+.+
T Consensus 197 ~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-p~~v~~i-~~~aF~~c~~L~~i~lp~ 274 (394)
T 4gt6_A 197 GTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKI-PNGVARI-ETHAFDSCAYLASVKMPD 274 (394)
T ss_dssp CTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEEC-CTTEEEE-CTTTTTTCSSCCEEECCT
T ss_pred ccchhhhccccceecccccccccccceeecccccccccccccccccccceEEc-CCcceEc-ccceeeecccccEEeccc
Confidence 112334455555544432200000000 00000000111122333333 1111000 112345678888888765
Q ss_pred ccCCCCCCCCCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCCCccceeeccccccccccccCCCccc
Q 003037 706 FYLCDTMPPLGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLKQVLFYNICHWEEWDFGKGDSI 785 (854)
Q Consensus 706 ~~~~~~l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 785 (854)
+...-.-..+..+++|+.+.+.+ .+..++...+ .++.+|+.+.+.+ .++.+. ..++
T Consensus 275 ~~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF-----------------~~c~~L~~i~lp~--~v~~I~---~~aF 330 (394)
T 4gt6_A 275 SVVSIGTGAFMNCPALQDIEFSS--RITELPESVF-----------------AGCISLKSIDIPE--GITQIL---DDAF 330 (394)
T ss_dssp TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTT-----------------TTCTTCCEEECCT--TCCEEC---TTTT
T ss_pred ccceecCcccccccccccccCCC--cccccCceee-----------------cCCCCcCEEEeCC--cccEeh---HhHh
Confidence 43211122366788888888863 3677776543 2467788887754 233333 2356
Q ss_pred cCCCccceeeecccccCcCCC-cCCCCCCCcCEEEEecCc
Q 003037 786 TIMPQLKKLEFERCTELKSVP-EKLLRSTTLEELSIVECP 824 (854)
Q Consensus 786 ~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~ 824 (854)
..+.+|+++.|.. .+..++ ..+.++++|+.+++.+..
T Consensus 331 ~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 331 AGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred hCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCce
Confidence 6788899998864 366675 457788999999988764
No 220
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.43 E-value=0.0017 Score=71.53 Aligned_cols=180 Identities=15% Similarity=0.116 Sum_probs=95.9
Q ss_pred CCccccchhHHHHHHHHhcccccc------cCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHH
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSE------QQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEF 169 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 169 (854)
-.+++|.++.++++.+.+...... ...-.+-|.|+|++|+|||+||+.+++. ....| +.++.+.-...
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~f---~~is~~~~~~~- 88 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVPF---FHISGSDFVEL- 88 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCCE---EEEEGGGTTTC-
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCCe---eeCCHHHHHHH-
Confidence 457899998877776654321100 0112234789999999999999999984 22222 23333321110
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcC--------------hhhHHHHHHhhcC--CCCC
Q 003037 170 RIAKAIIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTED--------------YNKWETFQRCLKN--GLRG 233 (854)
Q Consensus 170 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------------~~~~~~l~~~l~~--~~~g 233 (854)
. ...........+.......+.+|+||++..-. ......+...+.. ...+
T Consensus 89 -------------~-~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~ 154 (476)
T 2ce7_A 89 -------------F-VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG 154 (476)
T ss_dssp -------------C-TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGT
T ss_pred -------------H-hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCC
Confidence 0 00011222233344445678999999984310 0122334433331 1245
Q ss_pred cEEEEecccHHHHh-h-ccC---cceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCc
Q 003037 234 SKILVTTRKMTVAQ-M-MQS---NDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLP 300 (854)
Q Consensus 234 s~ilvTtR~~~v~~-~-~~~---~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlP 300 (854)
..||.||....... . ... ...+.+...+.++-.+++..++..... ..... ...|++.+.|+.
T Consensus 155 viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l-~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 155 IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL-AEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHTCTTCC
T ss_pred EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC-cchhh----HHHHHHhcCCCc
Confidence 56677776554322 1 121 237788888888888888766532211 11112 233777888887
No 221
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.0017 Score=69.33 Aligned_cols=178 Identities=17% Similarity=0.172 Sum_probs=94.3
Q ss_pred CccccchhHHHHHHHHhccccc-------ccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHH
Q 003037 97 SEVRGRDEEKNTLKSKLLCESS-------EQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEF 169 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 169 (854)
+++.|.++.++.|.+.+.-+-. .+....+-|.++|++|+|||.||+++++. ....| +.++.++-
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~f---i~v~~s~l---- 252 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSATF---LRIVGSEL---- 252 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCEE---EEEESGGG----
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCCE---EEEEHHHh----
Confidence 4578899888888776532110 00234567889999999999999999984 33332 23332221
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHHh-cCCeEEEEEecCCCc-----------Ch---hhHHHHHHhhcC--CCC
Q 003037 170 RIAKAIIEALEGSTPSLGELNSLLERIYASI-ARKKFLLVLDDVWTE-----------DY---NKWETFQRCLKN--GLR 232 (854)
Q Consensus 170 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~-----------~~---~~~~~l~~~l~~--~~~ 232 (854)
.... ..+.+.....+.... ...+++|++|++..- +. .....+...+.. ...
T Consensus 253 ----------~sk~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~ 320 (437)
T 4b4t_I 253 ----------IQKY--LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG 320 (437)
T ss_dssp ----------CCSS--SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS
T ss_pred ----------hhcc--CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC
Confidence 1111 112222333333222 356899999998421 00 112233333332 223
Q ss_pred CcEEEEecccHHHHhh-c-cC---cceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCc
Q 003037 233 GSKILVTTRKMTVAQM-M-QS---NDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLP 300 (854)
Q Consensus 233 gs~ilvTtR~~~v~~~-~-~~---~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlP 300 (854)
+..||.||-..+.... + .+ +..+.+..-+.++-.++|..+...-. .....++. .|++.+.|.-
T Consensus 321 ~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~-l~~dvdl~----~LA~~T~GfS 388 (437)
T 4b4t_I 321 DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN-LSEDVNLE----TLVTTKDDLS 388 (437)
T ss_dssp SEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC-BCSCCCHH----HHHHHCCSCC
T ss_pred CEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC-CCCcCCHH----HHHHhCCCCC
Confidence 4455666654443222 1 11 34577777777777888877653211 12222333 4556676653
No 222
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.37 E-value=0.00063 Score=80.75 Aligned_cols=149 Identities=15% Similarity=0.114 Sum_probs=79.1
Q ss_pred CccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccc---cccccCeeEEEEeCCccCHHHHHH
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNND---VINHFEKRIWVCVSDPFDEFRIAK 173 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~f~~~~wv~~s~~~~~~~~~~ 173 (854)
..+|||+++++++...|.... ..-+.|+|++|+|||++|+.+++... +.......-++.++-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------
Confidence 469999999999999997532 23367999999999999999987410 000011111221111
Q ss_pred HHHHHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccHHHHh------
Q 003037 174 AIIEALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKMTVAQ------ 247 (854)
Q Consensus 174 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~------ 247 (854)
.....+. .... +...+......++.+|++|.. .+....+...+. ....++|.||.......
T Consensus 245 --g~~~~G~--~e~~---l~~~~~~~~~~~~~iLfiD~~----~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~ 311 (758)
T 3pxi_A 245 --GTKYRGE--FEDR---LKKVMDEIRQAGNIILFIDAA----IDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDA 311 (758)
T ss_dssp ------------CTT---HHHHHHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTTCS
T ss_pred --cccccch--HHHH---HHHHHHHHHhcCCEEEEEcCc----hhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccH
Confidence 0000000 0111 222222333467889999921 112222322222 22356666665443111
Q ss_pred -hccCcceEecCCCCHHHHHHHHHHHh
Q 003037 248 -MMQSNDVILIRELSEQACWSLFEQLA 273 (854)
Q Consensus 248 -~~~~~~~~~l~~L~~~e~~~l~~~~~ 273 (854)
.......+.+...+.++..+++....
T Consensus 312 al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 312 ALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp HHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 01123578999999999999998654
No 223
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.36 E-value=0.0016 Score=70.28 Aligned_cols=178 Identities=15% Similarity=0.129 Sum_probs=95.3
Q ss_pred CccccchhHHHHHHHHhcccc-------cccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHH
Q 003037 97 SEVRGRDEEKNTLKSKLLCES-------SEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEF 169 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~-------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 169 (854)
.++.|-++.+++|.+.+.-+- .-+...++-|.++|++|+|||+||+++++. ....| +.+..+.-.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~f---i~vs~s~L~--- 280 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDATF---IRVIGSELV--- 280 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGGC---
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCCe---EEEEhHHhh---
Confidence 468899999888877643210 000235677889999999999999999984 33333 333333211
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHH-HhcCCeEEEEEecCCCc--------Ch------hhHHHHHHhhcCC--CC
Q 003037 170 RIAKAIIEALEGSTPSLGELNSLLERIYA-SIARKKFLLVLDDVWTE--------DY------NKWETFQRCLKNG--LR 232 (854)
Q Consensus 170 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~--------~~------~~~~~l~~~l~~~--~~ 232 (854)
... ..+.+.....+.. .-...+++|++|++..- .. .....++..+... ..
T Consensus 281 -----------sk~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 281 -----------QKY--VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp -----------CCS--SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred -----------ccc--CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 111 1112222222222 22466899999998431 00 0112233333322 23
Q ss_pred CcEEEEecccHHHHh-h-c---cCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCc
Q 003037 233 GSKILVTTRKMTVAQ-M-M---QSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLP 300 (854)
Q Consensus 233 gs~ilvTtR~~~v~~-~-~---~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlP 300 (854)
+..||.||-...... . . .-...+.+..-+.++-.++|..+...-. ....-.+ ..|++.+.|.-
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~-l~~dvdl----~~LA~~T~GfS 415 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMS-VERGIRW----ELISRLCPNST 415 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSC-BCSSCCH----HHHHHHCCSCC
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCC-CCCCCCH----HHHHHHCCCCC
Confidence 344555664433221 1 1 1245788888888888888877653211 1122233 34666777753
No 224
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.29 E-value=0.00025 Score=71.69 Aligned_cols=82 Identities=13% Similarity=0.152 Sum_probs=63.7
Q ss_pred cCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccccC--CCceeeecCCCCcc-cc
Q 003037 479 SAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLI--HLRFLKLVWLDIEE-LP 555 (854)
Q Consensus 479 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~--~L~~L~L~~~~i~~-lP 555 (854)
++++|++|.+++|....+.+ +|..+..+++|++|+|++|. +..+ ..+..+. +|++|+|++|.+.. +|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~-l~~~~~~l~~L~~L~Ls~N~--------i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDD-MSSIVQKAPNLKILNLSGNE--------LKSE-RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGG-GTTHHHHSTTCCEEECTTSC--------CCSG-GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCcc-chhHHhhCCCCCEEECCCCc--------cCCc-hhhhhcccCCcceEEccCCcCccccC
Confidence 56789999999998544333 55677899999999999999 6665 3455555 99999999999873 55
Q ss_pred h-------hhhcCCCCcEEeec
Q 003037 556 E-------TCCELFNVQTLEVL 570 (854)
Q Consensus 556 ~-------~i~~L~~L~~L~l~ 570 (854)
. .+..+++|+.||-.
T Consensus 238 ~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 238 DQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp SHHHHHHHHHHHCTTCCEESSC
T ss_pred cchhHHHHHHHHCcccCeECCc
Confidence 2 36789999999754
No 225
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.23 E-value=0.00014 Score=69.68 Aligned_cols=71 Identities=13% Similarity=0.047 Sum_probs=41.6
Q ss_pred hhhhhcCCCcccEEEecCC-CCccccccccccccccccccCCCceeeecCCCCc-----ccchhhhcCCCCcEEeecCcc
Q 003037 500 LPVLFDQLTCLRTLKITGI-SGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIE-----ELPETCCELFNVQTLEVLDCR 573 (854)
Q Consensus 500 l~~~~~~l~~Lr~L~L~~~-~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~-----~lP~~i~~L~~L~~L~l~~~~ 573 (854)
+...+...+.|+.|+|++| ...... ...+...+....+|++|+|++|.|. .+...+...++|++|++++|.
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g---~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPT---LKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHH---HHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHH---HHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 4445566777777777776 521111 1224445555667777777777765 244455556677777777766
No 226
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.22 E-value=0.0021 Score=66.50 Aligned_cols=26 Identities=15% Similarity=0.369 Sum_probs=22.8
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
..++.+.|+|++|+|||+||+.+++.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567889999999999999999984
No 227
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.22 E-value=0.00048 Score=64.44 Aligned_cols=88 Identities=9% Similarity=0.107 Sum_probs=62.1
Q ss_pred cCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccc-ccccccc----CCCceeeecCCC-Cc
Q 003037 479 SAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEI-PKEIKKL----IHLRFLKLVWLD-IE 552 (854)
Q Consensus 479 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~l-P~~i~~L----~~L~~L~L~~~~-i~ 552 (854)
.-.+|++|+++++. +...--..+.+|++|+.|+|++|.. +++- -..+..+ ++|++|+|++|. |+
T Consensus 59 ~~~~L~~LDLs~~~---Itd~GL~~L~~~~~L~~L~L~~C~~-------ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 59 DKYKIQAIDATDSC---IMSIGFDHMEGLQYVEKIRLCKCHY-------IEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp TCCCEEEEEEESCC---CCGGGGGGGTTCSCCCEEEEESCTT-------CCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred CCceEeEEeCcCCC---ccHHHHHHhcCCCCCCEEEeCCCCc-------cCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 34579999999987 3322233468999999999999974 3331 1234443 479999999986 76
Q ss_pred c--cchhhhcCCCCcEEeecCcccccc
Q 003037 553 E--LPETCCELFNVQTLEVLDCRSFRR 577 (854)
Q Consensus 553 ~--lP~~i~~L~~L~~L~l~~~~~l~~ 577 (854)
. + ..+.++++|++|++++|..++.
T Consensus 129 D~Gl-~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 129 DKGI-IALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHH-HHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHH-HHHhcCCCCCEEECCCCCCCCc
Confidence 2 3 3467889999999999986543
No 228
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.20 E-value=0.00058 Score=72.31 Aligned_cols=151 Identities=12% Similarity=0.126 Sum_probs=86.0
Q ss_pred CccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHH
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAII 176 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 176 (854)
..++|+++.++.+...+... .-+.|+|++|+|||+||+.+++. ....| ..+..........+....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~~--~~~~~---~~i~~~~~~~~~~l~g~~- 92 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAKT--MDLDF---HRIQFTPDLLPSDLIGTM- 92 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHHH--TTCCE---EEEECCTTCCHHHHHEEE-
T ss_pred cceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHHH--hCCCe---EEEecCCCCChhhcCCce-
Confidence 56899999999998887642 24789999999999999999883 32222 233333333333221110
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHhcCC---eEEEEEecCCCcChhhHHHHHHhhcCC-----------CCCcEEEEeccc
Q 003037 177 EALEGSTPSLGELNSLLERIYASIARK---KFLLVLDDVWTEDYNKWETFQRCLKNG-----------LRGSKILVTTRK 242 (854)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~~l~~~l~~k---~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvTtR~ 242 (854)
....... .. ..... ..++++|++..-.......+...+... .....|+.|+..
T Consensus 93 --~~~~~~~--~~---------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np 159 (331)
T 2r44_A 93 --IYNQHKG--NF---------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNP 159 (331)
T ss_dssp --EEETTTT--EE---------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECT
T ss_pred --eecCCCC--ce---------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCC
Confidence 0000000 00 00011 258999999765555566666655432 234455555542
Q ss_pred HH------HHhh-ccCcc-eEecCCCCHHHHHHHHHHHhc
Q 003037 243 MT------VAQM-MQSND-VILIRELSEQACWSLFEQLAF 274 (854)
Q Consensus 243 ~~------v~~~-~~~~~-~~~l~~L~~~e~~~l~~~~~~ 274 (854)
.. +... ..-.. .+.+.+.+.++-.+++...+.
T Consensus 160 ~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 160 VEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp TCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred CcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 21 1111 11122 588999999999999988764
No 229
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.15 E-value=0.0019 Score=63.67 Aligned_cols=86 Identities=19% Similarity=0.137 Sum_probs=52.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcC-----------C-CCCCccHH
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEG-----------S-TPSLGELN 190 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-----------~-~~~~~~~~ 190 (854)
.-.++.|+|.+|+||||||..++. ..-..++|++.....+...+.. +.+..+. . .....+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 445899999999999999999887 1224678888776555554433 3322211 1 11222223
Q ss_pred HHHHHHHHHhcCCeEEEEEecCCC
Q 003037 191 SLLERIYASIARKKFLLVLDDVWT 214 (854)
Q Consensus 191 ~~~~~l~~~l~~k~~LlVlDdv~~ 214 (854)
.....++..+..+.-++|+|.+-.
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcHH
Confidence 344445555444578999998743
No 230
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.14 E-value=0.0012 Score=78.55 Aligned_cols=134 Identities=16% Similarity=0.252 Sum_probs=74.1
Q ss_pred CccccchhHHHHHHHHhcccccc---cCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHH
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSE---QQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAK 173 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 173 (854)
..++|.++.++.+...+.....+ +......+.++|++|+|||++|+.+++. .. ...+.++.+...+...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~--l~---~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH--HT---CEEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH--hc---CCEEEEechhhcchhh---
Confidence 45889999998888877543210 0123457899999999999999999884 21 2334455443221100
Q ss_pred HHHHHhcCCCCCCccHHHHHHHHHHHhc-CCeEEEEEecCCCcChhhHHHHHHhhcCCC-----------CCcEEEEecc
Q 003037 174 AIIEALEGSTPSLGELNSLLERIYASIA-RKKFLLVLDDVWTEDYNKWETFQRCLKNGL-----------RGSKILVTTR 241 (854)
Q Consensus 174 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR 241 (854)
...+.+..+.-...+ ....+...++ ....+|+||++.....+....+...+..+. ....||.||.
T Consensus 530 --~~~l~g~~~g~~g~~-~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN 606 (758)
T 1r6b_X 530 --VSRLIGAPPGYVGFD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTN 606 (758)
T ss_dssp --CSSSCCCCSCSHHHH-HTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEEC
T ss_pred --HhhhcCCCCCCcCcc-ccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecC
Confidence 001111111110000 0111222222 346799999997666666777777766431 2345777765
No 231
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.07 E-value=0.00037 Score=72.67 Aligned_cols=56 Identities=16% Similarity=0.015 Sum_probs=34.3
Q ss_pred hhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEe
Q 003037 103 DEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCV 162 (854)
Q Consensus 103 ~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 162 (854)
...++.+.+++..... .....+.|+|++|+|||+||+.+++.... ..-..++++++
T Consensus 134 ~~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~~~~-~~g~~v~~~~~ 189 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHELSE-KKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHHHHH-HSCCCEEEEEH
T ss_pred HHHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEH
Confidence 3344555556543221 12457889999999999999999984220 22234555554
No 232
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.06 E-value=0.00034 Score=67.01 Aligned_cols=111 Identities=13% Similarity=0.077 Sum_probs=70.5
Q ss_pred cccCCCceEEEEecC-CCCc-ccCchhhhhcCCCcccEEEecCCCCccccccccccccccccccCCCceeeecCCCCcc-
Q 003037 477 IFSAKKLRSFLIHST-NKDL-ISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKKLIHLRFLKLVWLDIEE- 553 (854)
Q Consensus 477 ~~~~~~Lr~L~l~~~-~~~~-~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~L~~L~~L~L~~~~i~~- 553 (854)
+...+.|++|.+.+| .... -...+...+...+.|++|+|++|...+.. ...+...+.....|++|+|++|.|..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g---~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPV---AFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHH---HHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHH---HHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 445678888888887 5211 00113455677788899999888821111 11245556666788899999888763
Q ss_pred ----cchhhhcCCCCcEEee--cCcccccc-----cccccccCCCCccc
Q 003037 554 ----LPETCCELFNVQTLEV--LDCRSFRR-----LPQGFGKLVNLRNL 591 (854)
Q Consensus 554 ----lP~~i~~L~~L~~L~l--~~~~~l~~-----lp~~i~~L~~L~~L 591 (854)
+...+...++|++|++ ++|. +.. +...+...++|++|
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L 156 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKF 156 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEE
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEE
Confidence 5667777788999999 6666 432 33334445556555
No 233
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.02 E-value=0.0021 Score=77.28 Aligned_cols=135 Identities=19% Similarity=0.314 Sum_probs=73.6
Q ss_pred ccccchhHHHHHHHHhcccccc---cCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHH
Q 003037 98 EVRGRDEEKNTLKSKLLCESSE---QQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKA 174 (854)
Q Consensus 98 ~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 174 (854)
.++|.+..++.+...+.....+ +......+.|+|+.|+|||++|+.+++. ....-...+.++++...... ..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~--~~~~~~~~i~i~~~~~~~~~-~~-- 633 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-AV-- 633 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH--HHSSGGGEEEECTTTCCSSG-GG--
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhccchh-HH--
Confidence 5799999999988887654211 0123367889999999999999999874 21111123444444322210 00
Q ss_pred HHHHhcCCCC---CCccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCC-----------CCcEEEEec
Q 003037 175 IIEALEGSTP---SLGELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGL-----------RGSKILVTT 240 (854)
Q Consensus 175 i~~~l~~~~~---~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTt 240 (854)
..+.+..+ .......+...+.. ...-+|+||++..........+...+..+. .+..||+||
T Consensus 634 --s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~ts 708 (854)
T 1qvr_A 634 --SRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTS 708 (854)
T ss_dssp --GGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEEC
T ss_pred --HHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEec
Confidence 11111000 00000112222221 334699999997666667777877776542 244477777
Q ss_pred cc
Q 003037 241 RK 242 (854)
Q Consensus 241 R~ 242 (854)
..
T Consensus 709 n~ 710 (854)
T 1qvr_A 709 NL 710 (854)
T ss_dssp CT
T ss_pred Cc
Confidence 64
No 234
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.01 E-value=0.00046 Score=70.83 Aligned_cols=69 Identities=20% Similarity=0.335 Sum_probs=46.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEe--CCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCV--SDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASI 200 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 200 (854)
..+++.|+|++|+|||+||.+++.. .-..++|+++ .+..+. . ..+.+.....+.+.+
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~-------------~---~~~le~~l~~i~~~l 180 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG-------------Y---NTDFNVFVDDIARAM 180 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT-------------C---BCCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh-------------h---hcCHHHHHHHHHHHH
Confidence 3467789999999999999999873 1224567777 332110 0 035566666667767
Q ss_pred cCCeEEEEEecCC
Q 003037 201 ARKKFLLVLDDVW 213 (854)
Q Consensus 201 ~~k~~LlVlDdv~ 213 (854)
...+ ++|+|++.
T Consensus 181 ~~~~-LLVIDsI~ 192 (331)
T 2vhj_A 181 LQHR-VIVIDSLK 192 (331)
T ss_dssp HHCS-EEEEECCT
T ss_pred hhCC-EEEEeccc
Confidence 6666 99999984
No 235
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.99 E-value=0.0011 Score=74.81 Aligned_cols=165 Identities=14% Similarity=0.168 Sum_probs=77.7
Q ss_pred CccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHH
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAII 176 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 176 (854)
..++|.++..+.+.+.+.-..-.......++.|+|++|+||||||+.++.. ....| .-+.++...+...+.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~--l~~~~---~~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS--LGRKF---VRISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH--HTCEE---EEECCCC------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh--cCCCe---EEEEecccchhhhhhhHHH
Confidence 357888888777755443111000124568999999999999999999884 22222 2233333222111111111
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHhcCCeEEEEEecCCCcChh----hHHHHHHhhcCCC---------------CCcEEE
Q 003037 177 EALEGSTPSLGELNSLLERIYASIARKKFLLVLDDVWTEDYN----KWETFQRCLKNGL---------------RGSKIL 237 (854)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~----~~~~l~~~l~~~~---------------~gs~il 237 (854)
..++.. .......+. ......-+++||++..-... ....+...+.... ....||
T Consensus 156 ~~ig~~------~~~~~~~~~-~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI 228 (543)
T 3m6a_A 156 TYVGAM------PGRIIQGMK-KAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI 228 (543)
T ss_dssp --------------CHHHHHH-TTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE
T ss_pred HHhccC------chHHHHHHH-HhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEE
Confidence 111110 001111111 12223348889998553222 1233343332211 234566
Q ss_pred EecccHHHHh-h-ccCcceEecCCCCHHHHHHHHHHHh
Q 003037 238 VTTRKMTVAQ-M-MQSNDVILIRELSEQACWSLFEQLA 273 (854)
Q Consensus 238 vTtR~~~v~~-~-~~~~~~~~l~~L~~~e~~~l~~~~~ 273 (854)
.||....... . ......+.+.+++.++-.+++..+.
T Consensus 229 ~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 229 ATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred eccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 6665432111 1 1112478899999998888887653
No 236
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.98 E-value=0.011 Score=63.71 Aligned_cols=34 Identities=9% Similarity=0.226 Sum_probs=17.8
Q ss_pred cCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEec
Q 003037 479 SAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKIT 516 (854)
Q Consensus 479 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~ 516 (854)
...+|+++.+... +..+....|.+|.+|+.+.|.
T Consensus 44 ~~~~i~~v~ip~~----vt~Ig~~aF~~C~~L~~I~lp 77 (379)
T 4h09_A 44 DRDRISEVRVNSG----ITSIGEANFNSCYNMTKVTVA 77 (379)
T ss_dssp GGGGCSEEEECTT----EEEECTTTTTTCTTCCEEEEC
T ss_pred cccCCEEEEeCCC----ccChHHHHhhCCCCCCEEEeC
Confidence 3445555555432 333334456666666666664
No 237
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.97 E-value=0.0046 Score=68.56 Aligned_cols=43 Identities=19% Similarity=0.139 Sum_probs=36.0
Q ss_pred CccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
..++|+++.++.+...+... .-|.|+|++|+|||+||+.+++.
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHH
Confidence 45899999999888877632 24789999999999999999984
No 238
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.93 E-value=0.0096 Score=64.57 Aligned_cols=233 Identities=12% Similarity=0.086 Sum_probs=133.6
Q ss_pred ccccccCCCceeeecCCCCcccch-hhhcCCCCcEEeecCcccccccccc-cccCCCCcccCceeecCCCCCCccccccc
Q 003037 533 KEIKKLIHLRFLKLVWLDIEELPE-TCCELFNVQTLEVLDCRSFRRLPQG-FGKLVNLRNLSKFIVSRSGGSKLEDLRQL 610 (854)
Q Consensus 533 ~~i~~L~~L~~L~L~~~~i~~lP~-~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~~l~~L~~L 610 (854)
..+.++.+|+.+.+..+ +..++. .+.++.+|+.+++..+ +..++.. +..+..|+.+.........+........|
T Consensus 156 ~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l 232 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGV 232 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCC
T ss_pred hhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCceEeehhhcccCCC
Confidence 45678888888888765 445554 4667788888888654 4445433 45566666552211000000111111222
Q ss_pred ccCCceeEEecccCCCChhHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHHhhhCCCCCCCCeEEEeccCCCCCCCC-
Q 003037 611 KHLRGSLKIQGLGNVRDADEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAIIEALQPPPNIESLRIEYHYIGISGWP- 689 (854)
Q Consensus 611 ~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~lp- 689 (854)
+ .+.+.. .+. ......+..+..|+.+.+..+ ........+..+..|+.+.. .... ++
T Consensus 233 ~----~i~ip~--~~~---~i~~~~f~~~~~l~~~~~~~~--------~~~i~~~~F~~~~~l~~~~~-~~~~----i~~ 290 (394)
T 4fs7_A 233 K----NIIIPD--SFT---ELGKSVFYGCTDLESISIQNN--------KLRIGGSLFYNCSGLKKVIY-GSVI----VPE 290 (394)
T ss_dssp C----EEEECT--TCC---EECSSTTTTCSSCCEEEECCT--------TCEECSCTTTTCTTCCEEEE-CSSE----ECT
T ss_pred c----eEEECC--Cce---ecccccccccccceeEEcCCC--------cceeeccccccccccceecc-Ccee----ecc
Confidence 2 332221 111 111134567788888887654 11111123455677887776 3321 22
Q ss_pred chhhcccCccEEEEecccCCCCCC--CCCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCCCccceee
Q 003037 690 SWIVSLNKLKKLVLYQFYLCDTMP--PLGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLKQVL 767 (854)
Q Consensus 690 ~~~~~l~~L~~L~L~~~~~~~~l~--~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~ 767 (854)
..+..+.+|+.+.+.++ ...++ .+..+.+|+.+.|.++ ++.|+...+ .++.+|+.+.
T Consensus 291 ~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF-----------------~~c~~L~~i~ 349 (394)
T 4fs7_A 291 KTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSF-----------------RGCTSLSNIN 349 (394)
T ss_dssp TTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTT-----------------TTCTTCCEEC
T ss_pred ccccccccccccccccc--cceechhhhcCCCCCCEEEeCCc--ccEEhHHhc-----------------cCCCCCCEEE
Confidence 23557889999999765 33333 3778899999999643 778876533 2467888887
Q ss_pred ccccccccccccCCCccccCCCccceeeecccccCcCCCcCCCCCCCcCEE
Q 003037 768 FYNICHWEEWDFGKGDSITIMPQLKKLEFERCTELKSVPEKLLRSTTLEEL 818 (854)
Q Consensus 768 l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L 818 (854)
+.. ++..+. ..++..+++|+++++..+ ++.+...+.++++|+.+
T Consensus 350 lp~--~l~~I~---~~aF~~C~~L~~i~lp~~--~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 350 FPL--SLRKIG---ANAFQGCINLKKVELPKR--LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp CCT--TCCEEC---TTTBTTCTTCCEEEEEGG--GGGGGGGBCTTCEEEEE
T ss_pred ECc--cccEeh---HHHhhCCCCCCEEEECCC--CEEhhheecCCCCCcEE
Confidence 754 244443 236678899999999754 55556667777777765
No 239
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.92 E-value=0.00018 Score=73.74 Aligned_cols=52 Identities=23% Similarity=0.253 Sum_probs=36.0
Q ss_pred CCccccchhHHHHHHHHhcccccc------cCCCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSE------QQNAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
-..++|.++.++.+.+.+...... .....+-+.|+|++|+|||+||+.+++.
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 467999998888877765421000 0011233779999999999999999984
No 240
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.84 E-value=0.019 Score=58.52 Aligned_cols=156 Identities=12% Similarity=0.157 Sum_probs=81.5
Q ss_pred CCccccchhHHHHHHHHhcccccc--------cCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccC
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSE--------QQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFD 167 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~--------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 167 (854)
-.++.|-++.++.|.+.+...-.. -..... +.|+|++|+||||||+.++.... . ..+.+....-.+
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~~~--~---~~i~i~g~~l~~ 82 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANESG--L---NFISVKGPELLN 82 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHHTT--C---EEEEEETTTTCS
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHHcC--C---CEEEEEcHHHHh
Confidence 456888888888877654311100 011122 89999999999999999998421 1 234444322111
Q ss_pred HHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHh-cCCeEEEEEecCCCcC-----------hhhHHHHHHhhcCCC--CC
Q 003037 168 EFRIAKAIIEALEGSTPSLGELNSLLERIYASI-ARKKFLLVLDDVWTED-----------YNKWETFQRCLKNGL--RG 233 (854)
Q Consensus 168 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~-----------~~~~~~l~~~l~~~~--~g 233 (854)
. .....+.....+.+.. ...+.++++|++.... ......+...+..+. ..
T Consensus 83 ~----------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~ 146 (274)
T 2x8a_A 83 M----------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQ 146 (274)
T ss_dssp S----------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTC
T ss_pred h----------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCC
Confidence 0 0001111222222222 3467899999984310 011223333343322 23
Q ss_pred cEEEEecccHHHHhhc-----cCcceEecCCCCHHHHHHHHHHHh
Q 003037 234 SKILVTTRKMTVAQMM-----QSNDVILIRELSEQACWSLFEQLA 273 (854)
Q Consensus 234 s~ilvTtR~~~v~~~~-----~~~~~~~l~~L~~~e~~~l~~~~~ 273 (854)
.-++.+|....+.... .-...+.+...+.++-.+++....
T Consensus 147 ~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 147 VFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 3455566655443221 224567888888888888887765
No 241
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.78 E-value=0.0087 Score=69.82 Aligned_cols=179 Identities=12% Similarity=0.102 Sum_probs=94.5
Q ss_pred CCccccchhHHHHHHHHhcc----ccc---ccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCH
Q 003037 96 VSEVRGRDEEKNTLKSKLLC----ESS---EQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDE 168 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 168 (854)
-+++.|.++.+++|.+.+.- +.- -+...++-|.++|++|+|||+||+++++. ...+| +.|+.++
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~~---- 273 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE---- 273 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHHH----
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhHH----
Confidence 34578888888887776432 110 00235677899999999999999999984 33332 3343221
Q ss_pred HHHHHHHHHHhcCCCCCCccHHHHHH-HHHHHhcCCeEEEEEecCCCc-------Chh----hHHHHHHhhcCC--CCCc
Q 003037 169 FRIAKAIIEALEGSTPSLGELNSLLE-RIYASIARKKFLLVLDDVWTE-------DYN----KWETFQRCLKNG--LRGS 234 (854)
Q Consensus 169 ~~~~~~i~~~l~~~~~~~~~~~~~~~-~l~~~l~~k~~LlVlDdv~~~-------~~~----~~~~l~~~l~~~--~~gs 234 (854)
+. ... ..+.+.... .+....+..+.+|+||++..- ... ....+...+... ..+.
T Consensus 274 ------l~----sk~--~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V 341 (806)
T 3cf2_A 274 ------IM----SKL--AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp ------HH----SSC--TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCE
T ss_pred ------hh----ccc--chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCE
Confidence 11 111 112222222 233333567899999998421 001 112233222221 1233
Q ss_pred EEEEecccHH-HHhhcc----CcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCc
Q 003037 235 KILVTTRKMT-VAQMMQ----SNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLP 300 (854)
Q Consensus 235 ~ilvTtR~~~-v~~~~~----~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlP 300 (854)
.||.||.... +...+. -...+.+..-+.++-.++|..+...... ....++. .|++++.|.-
T Consensus 342 ~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~-~~dvdl~----~lA~~T~Gfs 407 (806)
T 3cf2_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVDLE----QVANETHGHV 407 (806)
T ss_dssp EEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEE-CTTCCHH----HHHHHCCSCC
T ss_pred EEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCC-CcccCHH----HHHHhcCCCC
Confidence 4555555433 222221 1347888888888888888776532111 1222333 4666777664
No 242
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.77 E-value=0.032 Score=59.98 Aligned_cols=97 Identities=10% Similarity=0.065 Sum_probs=56.5
Q ss_pred CceEEEEeeeCCCCC-CcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCccccccccccccccccc
Q 003037 459 EKVRHSMLKLGYDSF-PDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIPKEIKK 537 (854)
Q Consensus 459 ~~~r~l~l~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP~~i~~ 537 (854)
.+++.+.+...-..+ ...|.++.+|+++.+..+ +..+-...|.++ .|..+.+..+ +..++.....
T Consensus 46 ~~i~~v~ip~~vt~Ig~~aF~~C~~L~~I~lp~~----v~~Ig~~aF~~c-~l~~i~~~~~---------l~~I~~~aF~ 111 (379)
T 4h09_A 46 DRISEVRVNSGITSIGEANFNSCYNMTKVTVAST----VTSIGDGAFADT-KLQSYTGMER---------VKKFGDYVFQ 111 (379)
T ss_dssp GGCSEEEECTTEEEECTTTTTTCTTCCEEEECTT----CCEECTTTTTTC-CCCEEEECTT---------CCEECTTTTT
T ss_pred cCCEEEEeCCCccChHHHHhhCCCCCCEEEeCCc----ceEechhhhcCC-CCceEECCce---------eeEeccceec
Confidence 456666665443332 345778899999998643 344445667777 5666666533 5556554444
Q ss_pred cCCCceeeecCCCCcccchhhhcCCCCcEEeec
Q 003037 538 LIHLRFLKLVWLDIEELPETCCELFNVQTLEVL 570 (854)
Q Consensus 538 L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~ 570 (854)
..+|+.+.+..+ +..+......-.+|..+.+.
T Consensus 112 ~~~L~~i~lp~~-~~~i~~~~F~~~~l~~~~~~ 143 (379)
T 4h09_A 112 GTDLDDFEFPGA-TTEIGNYIFYNSSVKRIVIP 143 (379)
T ss_dssp TCCCSEEECCTT-CCEECTTTTTTCCCCEEEEC
T ss_pred cCCcccccCCCc-cccccccccccceeeeeecc
Confidence 457888888654 44444433222345555544
No 243
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.74 E-value=0.018 Score=61.82 Aligned_cols=51 Identities=27% Similarity=0.283 Sum_probs=35.4
Q ss_pred CccccchhHHHHHHHHhc----cccc--------------------ccCCCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 97 SEVRGRDEEKNTLKSKLL----CESS--------------------EQQNAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~----~~~~--------------------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
..++|.++.++.|...+. .... ........+.|+|++|+|||++|+.+++.
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHH
Confidence 357888888888877662 1000 00112346889999999999999999984
No 244
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.72 E-value=0.027 Score=59.65 Aligned_cols=158 Identities=11% Similarity=-0.074 Sum_probs=100.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHH-Hhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYA-SIA 201 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~ 201 (854)
-.++..++|..|.||++.|..+.+... ...|+....+.+....+ .+++.+.+.. -+-
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~---------------------~~~l~~~~~~~plf 74 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTD---------------------WNAIFSLCQAMSLF 74 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCC---------------------HHHHHHHHHHHHHC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCC---------------------HHHHHHHhcCcCCc
Confidence 356888999999999999988877311 12343221122222222 2333333321 234
Q ss_pred CCeEEEEEecCCC-cChhhHHHHHHhhcCCCCCcEEEEeccc-------HHHHhh-ccCcceEecCCCCHHHHHHHHHHH
Q 003037 202 RKKFLLVLDDVWT-EDYNKWETFQRCLKNGLRGSKILVTTRK-------MTVAQM-MQSNDVILIRELSEQACWSLFEQL 272 (854)
Q Consensus 202 ~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~-------~~v~~~-~~~~~~~~l~~L~~~e~~~l~~~~ 272 (854)
+.+-++|+|+++. -....++.+...+.....++.+|+++.. ..+... ......++..+++.++....+...
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 6677889999865 4446788888888776678887776643 123333 334568899999999999888776
Q ss_pred hcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHH
Q 003037 273 AFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTI 306 (854)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~ 306 (854)
+...+. ....+.+..|++.++|...++...
T Consensus 155 ~~~~g~----~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 155 AKQLNL----ELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHTTC----EECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHcCC----CCCHHHHHHHHHHhchHHHHHHHH
Confidence 532221 122356777999999998877653
No 245
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.69 E-value=0.014 Score=58.76 Aligned_cols=180 Identities=15% Similarity=0.153 Sum_probs=87.6
Q ss_pred cCCccccchhHHHHHHHHhccccccc------CCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCH
Q 003037 95 DVSEVRGRDEEKNTLKSKLLCESSEQ------QNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDE 168 (854)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~~------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 168 (854)
.-++++|.++...++.+....-.... -.-.+-+.|+|++|+||||||+.++... . ...+.+...
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~--~---~~~i~~~~~----- 83 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--R---VPFITASGS----- 83 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT--T---CCEEEEEHH-----
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh--C---CCEEEeeHH-----
Confidence 34578998877666654432110000 0011228899999999999999999842 2 122333211
Q ss_pred HHHHHHHHHHhcCCCCCCccHHHHHHHHHHHh-cCCeEEEEEecCCCc----------Chhh----HHHHHHhhcCCC--
Q 003037 169 FRIAKAIIEALEGSTPSLGELNSLLERIYASI-ARKKFLLVLDDVWTE----------DYNK----WETFQRCLKNGL-- 231 (854)
Q Consensus 169 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------~~~~----~~~l~~~l~~~~-- 231 (854)
.+ .... ..........+.+.. ...+.++++|++..- .... ...+...+..+.
T Consensus 84 -~~----~~~~------~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~ 152 (254)
T 1ixz_A 84 -DF----VEMF------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 152 (254)
T ss_dssp -HH----HHSC------TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT
T ss_pred -HH----HHHH------hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCC
Confidence 11 1100 001111122233333 245689999998210 0011 123333333222
Q ss_pred CCcEEEEecccHHHHhh-c----cCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCc
Q 003037 232 RGSKILVTTRKMTVAQM-M----QSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLP 300 (854)
Q Consensus 232 ~gs~ilvTtR~~~v~~~-~----~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlP 300 (854)
....++.||........ . .-...+.+...+.++-.+++...+.... ......+ ..|++.+.|.-
T Consensus 153 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~-~~~~~~~----~~la~~~~G~~ 221 (254)
T 1ixz_A 153 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP-LAEDVDL----ALLAKRTPGFV 221 (254)
T ss_dssp CCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSC-BCTTCCH----HHHHHTCTTCC
T ss_pred CCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCC-CCcccCH----HHHHHHcCCCC
Confidence 22234445555543322 1 1234678888888888888876653211 1111122 34666777754
No 246
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.66 E-value=0.011 Score=64.22 Aligned_cols=305 Identities=10% Similarity=0.133 Sum_probs=152.8
Q ss_pred eEEEEeeeCCCCC-CcccccCCCceEEEEecCCCCcccCchhhhhcCCCcccEEEecCCCCcccccccccccc-cccccc
Q 003037 461 VRHSMLKLGYDSF-PDSIFSAKKLRSFLIHSTNKDLISPVLPVLFDQLTCLRTLKITGISGEKRYFRIIVEIP-KEIKKL 538 (854)
Q Consensus 461 ~r~l~l~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~~~~~~i~~lP-~~i~~L 538 (854)
++.+.+...-..+ ...|.++.+|+++.+..+....+..+-...|..+..|+.+.+..+ +..++ ..+..+
T Consensus 66 L~sI~iP~svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~---------~~~I~~~aF~~c 136 (394)
T 4gt6_A 66 LTSVQIPDTVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS---------VTEIDSEAFHHC 136 (394)
T ss_dssp CCEEEECTTCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT---------CSEECTTTTTTC
T ss_pred CEEEEECCCeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc---------cceehhhhhhhh
Confidence 5556554432222 345778999999999876543345544566888888887776543 44444 345677
Q ss_pred CCCceeeecCCCCcccch-hhhcCCCCcEEeecCcccccccccccccCCCCcccCcee-ecCCCCCCcccccccccCCce
Q 003037 539 IHLRFLKLVWLDIEELPE-TCCELFNVQTLEVLDCRSFRRLPQGFGKLVNLRNLSKFI-VSRSGGSKLEDLRQLKHLRGS 616 (854)
Q Consensus 539 ~~L~~L~L~~~~i~~lP~-~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~-~~~~~~~~l~~L~~L~~L~~~ 616 (854)
.+|+.+.+..+ +..++. .+..+.+|+.+.+..+ +..+........+|+.+..-. +...+......+..+. .
T Consensus 137 ~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~----~ 209 (394)
T 4gt6_A 137 EELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALS----T 209 (394)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCC----E
T ss_pred cccccccccce-eeeecccceecccccccccccce--eeEeccccccccceeEEEECCcccccccchhhhccccc----e
Confidence 88888888654 444443 4567778888877653 444444333334444441100 0000000111111111 1
Q ss_pred eEEecc--cCCCCh-------hHHHHhhccCCCCCCcEEEEecCCCCCCCcchHHH-hhhCCCCCCCCeEEEeccCCCCC
Q 003037 617 LKIQGL--GNVRDA-------DEAKSAELEKKKNLLDLVLSFDGGQRIGDVNDKAI-IEALQPPPNIESLRIEYHYIGIS 686 (854)
Q Consensus 617 L~i~~l--~~~~~~-------~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~ 686 (854)
...... ...... .............+..+.+... ...+ ...+..+.+|+.+.+ ......-
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~---------v~~i~~~aF~~c~~L~~i~l-p~~~~~I 279 (394)
T 4gt6_A 210 ITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG---------VARIETHAFDSCAYLASVKM-PDSVVSI 279 (394)
T ss_dssp EEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT---------EEEECTTTTTTCSSCCEEEC-CTTCCEE
T ss_pred ecccccccccccceeecccccccccccccccccccceEEcCCc---------ceEcccceeeecccccEEec-cccccee
Confidence 110000 000000 0000000001112222222100 0001 123456677888877 3322211
Q ss_pred CCCchhhcccCccEEEEecccCCCCCCC--CCCCCCCCEEEEcCCCCceEeCccccCCCCCCCCccccCCccccCCCccc
Q 003037 687 GWPSWIVSLNKLKKLVLYQFYLCDTMPP--LGKLPSLEILEIRGNWNVKRVGDEFLGVGGGDHLHGISTSSSVIAFPKLK 764 (854)
Q Consensus 687 ~lp~~~~~l~~L~~L~L~~~~~~~~l~~--l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~L~ 764 (854)
-...+..+++|+.+.+... ...++. +..+.+|+.+.|.++ ++.|++..+ .++.+|+
T Consensus 280 -~~~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF-----------------~~C~~L~ 337 (394)
T 4gt6_A 280 -GTGAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPEG--ITQILDDAF-----------------AGCEQLE 337 (394)
T ss_dssp -CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTT-----------------TTCTTCC
T ss_pred -cCcccccccccccccCCCc--ccccCceeecCCCCcCEEEeCCc--ccEehHhHh-----------------hCCCCCC
Confidence 1223557888888888643 233333 777889999998753 677776543 2467888
Q ss_pred eeeccccccccccccCCCccccCCCccceeeecccccCcCCCcCCCCCCCcCEEEEe
Q 003037 765 QVLFYNICHWEEWDFGKGDSITIMPQLKKLEFERCTELKSVPEKLLRSTTLEELSIV 821 (854)
Q Consensus 765 ~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~ 821 (854)
.+.+-. +++.+. ..++..+++|+.+++.++... . ..+...++|+.+.+.
T Consensus 338 ~i~ip~--sv~~I~---~~aF~~C~~L~~i~~~~~~~~--~-~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 338 RIAIPS--SVTKIP---ESAFSNCTALNNIEYSGSRSQ--W-NAISTDSGLQNLPVA 386 (394)
T ss_dssp EEEECT--TCCBCC---GGGGTTCTTCCEEEESSCHHH--H-HTCBCCCCC------
T ss_pred EEEECc--ccCEEh---HhHhhCCCCCCEEEECCceee--h-hhhhccCCCCEEEeC
Confidence 887743 233333 235667889999998875321 1 345556777777764
No 247
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.64 E-value=0.026 Score=62.44 Aligned_cols=178 Identities=15% Similarity=0.104 Sum_probs=92.3
Q ss_pred ccCCccccchhHHHHHHHHhccccccc------CCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccC
Q 003037 94 IDVSEVRGRDEEKNTLKSKLLCESSEQ------QNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFD 167 (854)
Q Consensus 94 ~~~~~~vGr~~~~~~l~~~L~~~~~~~------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 167 (854)
....+++|.++.+.++.+....-.... ..-.+-+.|+|++|+||||||+.++... .. ..+.++.+.-.+
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~--~~---~~i~i~g~~~~~ 102 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--RV---PFITASGSDFVE 102 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT--TC---CEEEEEGGGGTS
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CC---CEEEEehhHHHH
Confidence 345679999987776665433211000 0112238899999999999999999842 21 223343322110
Q ss_pred HHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhc----CCeEEEEEecCCCc----------ChhhH----HHHHHhhcC
Q 003037 168 EFRIAKAIIEALEGSTPSLGELNSLLERIYASIA----RKKFLLVLDDVWTE----------DYNKW----ETFQRCLKN 229 (854)
Q Consensus 168 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~k~~LlVlDdv~~~----------~~~~~----~~l~~~l~~ 229 (854)
.. . ......+...++ ..+.++++|++..- ....+ ..+...+..
T Consensus 103 --------------~~--~---g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg 163 (499)
T 2dhr_A 103 --------------MF--V---GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 163 (499)
T ss_dssp --------------SC--T---THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGG
T ss_pred --------------hh--h---hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcc
Confidence 00 0 011122333332 23579999998321 01122 233333332
Q ss_pred C--CCCcEEEEecccHHHHhh--cc---CcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCc
Q 003037 230 G--LRGSKILVTTRKMTVAQM--MQ---SNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLP 300 (854)
Q Consensus 230 ~--~~gs~ilvTtR~~~v~~~--~~---~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlP 300 (854)
+ ..+..++.||........ .. -...+.+...+.++-.+++..++.... ...... ...|++.+.|+.
T Consensus 164 ~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~-l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 164 FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP-LAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp CCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSC-CCCSST----THHHHTTSCSCC
T ss_pred cccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCC-CChHHH----HHHHHHhcCCCC
Confidence 2 233455666666554321 11 234788888888888888876653211 111111 234677787776
No 248
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.63 E-value=0.0049 Score=73.09 Aligned_cols=158 Identities=12% Similarity=0.104 Sum_probs=85.9
Q ss_pred cCCccccchhHHHHHHHHhcccccc-------cCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccC
Q 003037 95 DVSEVRGRDEEKNTLKSKLLCESSE-------QQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFD 167 (854)
Q Consensus 95 ~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 167 (854)
.-..++|.++.+++|.+++...-.. .......|.|+|++|+||||||+.++.. ....| +.++.+
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~---- 272 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP---- 272 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHH----
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEch----
Confidence 3356899999999988877531000 0124456899999999999999999884 32222 333321
Q ss_pred HHHHHHHHHHHhcCCCCCCccHH-HHHHHHHHHhcCCeEEEEEecCCCc--------C---hhhHHHHHHhhcCC--CCC
Q 003037 168 EFRIAKAIIEALEGSTPSLGELN-SLLERIYASIARKKFLLVLDDVWTE--------D---YNKWETFQRCLKNG--LRG 233 (854)
Q Consensus 168 ~~~~~~~i~~~l~~~~~~~~~~~-~~~~~l~~~l~~k~~LlVlDdv~~~--------~---~~~~~~l~~~l~~~--~~g 233 (854)
.+.... ....+ .+...+.......+.++++|++... . ......+...+... ..+
T Consensus 273 ----------~l~~~~--~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~ 340 (806)
T 1ypw_A 273 ----------EIMSKL--AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (806)
T ss_dssp ----------HHSSSS--TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSC
T ss_pred ----------Hhhhhh--hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhccccc
Confidence 111111 01111 2222233333456789999998321 0 01122344433322 233
Q ss_pred cEEEEecccHH-HHhhcc----CcceEecCCCCHHHHHHHHHHHh
Q 003037 234 SKILVTTRKMT-VAQMMQ----SNDVILIRELSEQACWSLFEQLA 273 (854)
Q Consensus 234 s~ilvTtR~~~-v~~~~~----~~~~~~l~~L~~~e~~~l~~~~~ 273 (854)
..+|.||.... +...+. -...+.+...+.++-.+++...+
T Consensus 341 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp CEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred EEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 45555655432 211111 12457788888898888887665
No 249
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.62 E-value=0.0043 Score=66.13 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=33.8
Q ss_pred CCccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
-..++|.+..++.+...+.... ..-+.|+|.+|+|||++|+.+++.
T Consensus 23 f~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred chhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHHh
Confidence 4569999887666554443222 123889999999999999999874
No 250
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.41 E-value=0.0081 Score=63.25 Aligned_cols=84 Identities=19% Similarity=0.154 Sum_probs=56.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCC-----CCCccHHHHHHHHH
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGST-----PSLGELNSLLERIY 197 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 197 (854)
.-+++.|+|++|+||||||.+++.. ....-..++|++....++.. .++.++... ....+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 4679999999999999999988874 22222357788877766654 445554431 12345666666666
Q ss_pred HHhc-CCeEEEEEecCC
Q 003037 198 ASIA-RKKFLLVLDDVW 213 (854)
Q Consensus 198 ~~l~-~k~~LlVlDdv~ 213 (854)
..++ .+.-++|+|.+-
T Consensus 133 ~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHTSCCSEEEEECTT
T ss_pred HHhhhcCCCeEEehHhh
Confidence 5554 456689999873
No 251
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.41 E-value=0.0029 Score=61.95 Aligned_cols=113 Identities=14% Similarity=0.003 Sum_probs=62.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCC--CCccHHHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTP--SLGELNSLLERIYASI 200 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l 200 (854)
.-.++.|+|..|+||||++..+... ...+-..++.+...... . ....++..++.... .....+++.+.+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 4578999999999999999777764 22222234444433221 1 11233344433211 1123344555555444
Q ss_pred cCC-eEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccH
Q 003037 201 ARK-KFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKM 243 (854)
Q Consensus 201 ~~k-~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 243 (854)
.+. .-+||+|.+..-..+..+.+.. +.+ .|..||+|-+..
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDK 126 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSB
T ss_pred hCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEeccc
Confidence 434 4499999986543344444433 332 267899998843
No 252
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.40 E-value=0.011 Score=58.72 Aligned_cols=115 Identities=17% Similarity=0.101 Sum_probs=61.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCC-------------------
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTP------------------- 184 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------------------- 184 (854)
-.++.|+|.+|+|||||++.++.... ..-..++|+.... ....+...+. .++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCc
Confidence 45899999999999999999885321 1122456666543 3444433332 3322110
Q ss_pred ----CCccHHHHHHHHHHHhc-CCe--EEEEEecCCC---cChhhHHHHHHhhcC--CCCCcEEEEecccH
Q 003037 185 ----SLGELNSLLERIYASIA-RKK--FLLVLDDVWT---EDYNKWETFQRCLKN--GLRGSKILVTTRKM 243 (854)
Q Consensus 185 ----~~~~~~~~~~~l~~~l~-~k~--~LlVlDdv~~---~~~~~~~~l~~~l~~--~~~gs~ilvTtR~~ 243 (854)
...+.+++...+.+.+. .++ .++|+|.... .+......+...+.. ...|..||++|...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 11144555555554443 233 3999999742 133333444333322 12467788888754
No 253
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.39 E-value=0.01 Score=60.85 Aligned_cols=181 Identities=14% Similarity=0.146 Sum_probs=88.3
Q ss_pred ccCCccccchhHHHHHHHHhccccccc------CCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccC
Q 003037 94 IDVSEVRGRDEEKNTLKSKLLCESSEQ------QNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFD 167 (854)
Q Consensus 94 ~~~~~~vGr~~~~~~l~~~L~~~~~~~------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 167 (854)
...++++|.++.++++.+....-.... -.-.+-+.|+|++|+||||||+.++... . ...+.+...
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~--~---~~~i~~~~~---- 107 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--R---VPFITASGS---- 107 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT--T---CCEEEEEHH----
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc--C---CCEEEecHH----
Confidence 345678999887766655432211000 0011228899999999999999999842 2 122333221
Q ss_pred HHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHh-cCCeEEEEEecCCCc----------ChhhH----HHHHHhhcCCCC
Q 003037 168 EFRIAKAIIEALEGSTPSLGELNSLLERIYASI-ARKKFLLVLDDVWTE----------DYNKW----ETFQRCLKNGLR 232 (854)
Q Consensus 168 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------~~~~~----~~l~~~l~~~~~ 232 (854)
.+ .... ..........+.+.. ...+.++++||+..- ....+ ..+...+..+..
T Consensus 108 --~~----~~~~------~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~ 175 (278)
T 1iy2_A 108 --DF----VEMF------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 175 (278)
T ss_dssp --HH----HHST------TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT
T ss_pred --HH----HHHH------hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC
Confidence 11 1100 001111122222222 245689999998310 00111 223333332221
Q ss_pred --CcEEEEecccHHHHhh--c---cCcceEecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCc
Q 003037 233 --GSKILVTTRKMTVAQM--M---QSNDVILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLP 300 (854)
Q Consensus 233 --gs~ilvTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlP 300 (854)
...++.||........ . .-...+.+...+.++-.+++..++.... ...... ...|++.+.|+.
T Consensus 176 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~-~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 176 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP-LAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp TCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSC-BCTTCC----HHHHHHTCTTCC
T ss_pred CCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCC-CCcccC----HHHHHHHcCCCC
Confidence 2234445554433221 1 2245788888888888888876653211 111111 234666777765
No 254
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.35 E-value=0.01 Score=59.24 Aligned_cols=90 Identities=18% Similarity=0.137 Sum_probs=52.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhcccccc----ccCeeEEEEeCCccCHHHHHHHHHHHhcCCC---------CCCccH
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVIN----HFEKRIWVCVSDPFDEFRIAKAIIEALEGST---------PSLGEL 189 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~---------~~~~~~ 189 (854)
.-.++.|+|.+|+||||||..++....... .-..++|++....++...+ ..+++.++... ....+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCH
Confidence 445899999999999999998887321211 1357888887765555443 23444443221 011122
Q ss_pred HH---HHHHHHHHhc-CCeEEEEEecCC
Q 003037 190 NS---LLERIYASIA-RKKFLLVLDDVW 213 (854)
Q Consensus 190 ~~---~~~~l~~~l~-~k~~LlVlDdv~ 213 (854)
++ ....+.+.+. .+.-++|+|.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 22 2233444443 467788888873
No 255
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.34 E-value=0.017 Score=61.02 Aligned_cols=58 Identities=17% Similarity=0.214 Sum_probs=40.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhcccccc----ccCeeEEEEeCCccCHHHHHHHHHHHhc
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNNNDVIN----HFEKRIWVCVSDPFDEFRIAKAIIEALE 180 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 180 (854)
..-.++.|+|.+|+||||||..++....... .-..++|++....++...+.. +++.++
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g 181 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFN 181 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcC
Confidence 3567999999999999999988876422211 224788999888777766543 344443
No 256
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.22 E-value=0.012 Score=61.82 Aligned_cols=89 Identities=20% Similarity=0.210 Sum_probs=53.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhcccccc---------cc-----CeeEEEEeCCccCHHHHHHHHHHHhcCCC-----
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVIN---------HF-----EKRIWVCVSDPFDEFRIAKAIIEALEGST----- 183 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---------~f-----~~~~wv~~s~~~~~~~~~~~i~~~l~~~~----- 183 (854)
.-.++.|+|.+|+||||||.+++....... .. ..++|++....++.+++.. +++.++.+.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 457899999999999999988876421111 11 4778999888777776654 345554321
Q ss_pred ----CCCccHH---HHHHHHHHHhcC--CeEEEEEecC
Q 003037 184 ----PSLGELN---SLLERIYASIAR--KKFLLVLDDV 212 (854)
Q Consensus 184 ----~~~~~~~---~~~~~l~~~l~~--k~~LlVlDdv 212 (854)
....+.+ ++...+.+.++. +.-+||+|.+
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 0111222 233344444443 4557788877
No 257
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.13 E-value=0.017 Score=60.54 Aligned_cols=58 Identities=22% Similarity=0.202 Sum_probs=40.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccc----cCeeEEEEeCCccCHHHHHHHHHHHhcC
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINH----FEKRIWVCVSDPFDEFRIAKAIIEALEG 181 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 181 (854)
.-.++.|+|.+|+||||||.+++........ -..++|++....++..++. ++++.++.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~ 167 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGL 167 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTC
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCC
Confidence 4468999999999999999888764221110 2478899988877776654 34455543
No 258
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.09 E-value=0.0053 Score=58.18 Aligned_cols=116 Identities=20% Similarity=0.104 Sum_probs=62.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCC---ccCHHHHHHHHHHHhc-----CC-CCCCc-------
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSD---PFDEFRIAKAIIEALE-----GS-TPSLG------- 187 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~---~~~~~~~~~~i~~~l~-----~~-~~~~~------- 187 (854)
...|.|++-.|.||||+|-...-. ..++=-.+.++.+.. ......++..+. +. .. .....
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalR--A~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~--v~~~~~g~gf~~~~~~~~~~~~ 103 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAAR--AVGHGKNVGVVQFIKGTWPNGERNLLEPHG--VEFQVMATGFTWETQNREADTA 103 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHH--HHHTTCCEEEEESSCCSSCCHHHHHHGGGT--CEEEECCTTCCCCGGGHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeCCCCCccHHHHHHhCC--cEEEEcccccccCCCCcHHHHH
Confidence 345677777789999999666552 223323455554433 222333333321 10 00 00111
Q ss_pred cHHHHHHHHHHHhcCC-eEEEEEecCCC---cChhhHHHHHHhhcCCCCCcEEEEecccH
Q 003037 188 ELNSLLERIYASIARK-KFLLVLDDVWT---EDYNKWETFQRCLKNGLRGSKILVTTRKM 243 (854)
Q Consensus 188 ~~~~~~~~l~~~l~~k-~~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 243 (854)
.........++.+.+. -=|||||++-. -..-..+.+...+........||+|+|..
T Consensus 104 ~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 104 ACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 1122333444555444 44999999811 12234466777777777778899999975
No 259
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.09 E-value=0.015 Score=59.30 Aligned_cols=84 Identities=10% Similarity=0.060 Sum_probs=53.9
Q ss_pred EEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCC-----CCccHHHH-HHHHHHH
Q 003037 126 VISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTP-----SLGELNSL-LERIYAS 199 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~-~~~l~~~ 199 (854)
++.|.|.+|+||||||.+++........-..++|++....++.. .++.++.+.. ...+.++. ...+...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 78999999999999997776642211112468899988877764 3667765422 12355555 3333322
Q ss_pred --h-cCCeEEEEEecCCC
Q 003037 200 --I-ARKKFLLVLDDVWT 214 (854)
Q Consensus 200 --l-~~k~~LlVlDdv~~ 214 (854)
+ .++.-++|+|-+..
T Consensus 105 ~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HTCCTTCCEEEEEECSTT
T ss_pred HHhhccCceEEEEecccc
Confidence 2 35678999999843
No 260
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.08 E-value=0.032 Score=52.58 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHHhc
Q 003037 126 VISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.++|+|+.|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988864
No 261
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.03 E-value=0.073 Score=49.76 Aligned_cols=20 Identities=40% Similarity=0.693 Sum_probs=18.6
Q ss_pred EEEEEEecCCCcHHHHHHHH
Q 003037 125 QVISLVGMGGIGKTTLAQFA 144 (854)
Q Consensus 125 ~vv~I~G~gGiGKTtLa~~v 144 (854)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 262
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.97 E-value=0.11 Score=51.29 Aligned_cols=53 Identities=13% Similarity=0.093 Sum_probs=32.8
Q ss_pred HHHHHhcCCeEEEEEecCCC-cChhhHHHHHHhh-cCCCCCcEEEEecccHHHHh
Q 003037 195 RIYASIARKKFLLVLDDVWT-EDYNKWETFQRCL-KNGLRGSKILVTTRKMTVAQ 247 (854)
Q Consensus 195 ~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l-~~~~~gs~ilvTtR~~~v~~ 247 (854)
.+.+.+..++-+++||+--. -|...-..+...+ .....|..||++|-+...+.
T Consensus 140 ~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~ 194 (229)
T 2pze_A 140 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK 194 (229)
T ss_dssp HHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH
T ss_pred HHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH
Confidence 44566667888999998643 2344445565543 33334667888887766554
No 263
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.91 E-value=0.061 Score=53.34 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.-.+++|+|+.|+|||||++.++.-
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999873
No 264
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.89 E-value=0.0083 Score=58.08 Aligned_cols=43 Identities=23% Similarity=0.241 Sum_probs=33.8
Q ss_pred cchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHh
Q 003037 101 GRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 101 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.|++.++.|.+.+.... .....+|+|+|..|+||||+++.+..
T Consensus 2 ~~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CHHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35667778888776532 23568999999999999999998876
No 265
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.87 E-value=0.023 Score=60.20 Aligned_cols=84 Identities=19% Similarity=0.103 Sum_probs=55.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCC-----CCccHHHHHHHHH
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTP-----SLGELNSLLERIY 197 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 197 (854)
.-+++.|.|.+|+||||||.+++.. ....-..++|++....++.. .++.++.+.. ...+.+++...+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 3457889999999999999888764 22222478899988776654 2445543311 1235666666666
Q ss_pred HHhc-CCeEEEEEecCC
Q 003037 198 ASIA-RKKFLLVLDDVW 213 (854)
Q Consensus 198 ~~l~-~k~~LlVlDdv~ 213 (854)
+..+ ...-+||+|.+-
T Consensus 146 ~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHTTTCCSEEEEECTT
T ss_pred HHHhcCCCCEEEEeChH
Confidence 6554 345699999873
No 266
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.82 E-value=0.023 Score=58.98 Aligned_cols=103 Identities=11% Similarity=0.008 Sum_probs=54.8
Q ss_pred cccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHH
Q 003037 99 VRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEA 178 (854)
Q Consensus 99 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 178 (854)
++|-...+..+...+..... .....+|+|.|..|+||||+|+.+..-......-..+..+.....+-....+......
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~--~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~~~~~~ 146 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPE--PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQGLM 146 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCC--CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHTTCG
T ss_pred hhcchHHHHHHHHHHhccCC--CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhhhhHHHH
Confidence 45555666666655554432 3467899999999999999999887621110001134445544433222222210000
Q ss_pred hcCCCCCCccHHHHHHHHHHHhcCC
Q 003037 179 LEGSTPSLGELNSLLERIYASIARK 203 (854)
Q Consensus 179 l~~~~~~~~~~~~~~~~l~~~l~~k 203 (854)
-....+...+.+.+.+.+.....++
T Consensus 147 ~~~g~P~~~D~~~l~~~L~~L~~g~ 171 (321)
T 3tqc_A 147 KRKGFPESYDMPSLLRVLNAIKSGQ 171 (321)
T ss_dssp GGTTSGGGBCHHHHHHHHHHHHTTC
T ss_pred hhccCcccccHHHHHHHHHhhhccc
Confidence 0011234456666666666665555
No 267
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.77 E-value=0.044 Score=54.02 Aligned_cols=46 Identities=22% Similarity=0.255 Sum_probs=31.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhcccc---cc-ccCeeEEEEeCCccCH
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDV---IN-HFEKRIWVCVSDPFDE 168 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~-~f~~~~wv~~s~~~~~ 168 (854)
.-.+++|+|+.|+|||||++.++..... .. .-..++|+........
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 4579999999999999999999762111 11 1245778876554443
No 268
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.76 E-value=0.02 Score=60.49 Aligned_cols=83 Identities=17% Similarity=0.107 Sum_probs=52.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCC-----CCccHHHHHHHHH
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTP-----SLGELNSLLERIY 197 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 197 (854)
.-+++.|.|.+|+||||||.+++.. ....-..++|++....++... ++.++.... ...+.+++...+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 4568999999999999999888764 222223688999887766442 344543311 1123455555554
Q ss_pred HHhc-CCeEEEEEecC
Q 003037 198 ASIA-RKKFLLVLDDV 212 (854)
Q Consensus 198 ~~l~-~k~~LlVlDdv 212 (854)
...+ .+.-+||+|.+
T Consensus 135 ~l~~~~~~~lVVIDsl 150 (356)
T 1u94_A 135 ALARSGAVDVIVVDSV 150 (356)
T ss_dssp HHHHHTCCSEEEEECG
T ss_pred HHHhccCCCEEEEcCH
Confidence 4432 45568999987
No 269
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.75 E-value=0.039 Score=57.00 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=27.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccC-eeEEEEeC
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFE-KRIWVCVS 163 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s 163 (854)
.-.+++|+|.+|+|||||++.++..... .-. .++|+...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~--~~G~~v~~~~~e 73 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGT--AMGKKVGLAMLE 73 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHH--TSCCCEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHH--HcCCeEEEEeCc
Confidence 3458999999999999999988874221 112 45566543
No 270
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.73 E-value=0.027 Score=59.42 Aligned_cols=84 Identities=21% Similarity=0.123 Sum_probs=54.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCC-----CCccHHHHHHHHH
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTP-----SLGELNSLLERIY 197 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 197 (854)
.-+++.|+|.+|+||||||.+++.. ....=..++|++....++.. .++.++.... ...+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 4568999999999999999888763 22222467899988766653 2445543311 1234556555555
Q ss_pred HHhc-CCeEEEEEecCC
Q 003037 198 ASIA-RKKFLLVLDDVW 213 (854)
Q Consensus 198 ~~l~-~k~~LlVlDdv~ 213 (854)
...+ .+.-+||+|.+-
T Consensus 133 ~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHTTTCCSEEEEECGG
T ss_pred HHHhcCCCCEEEEcChH
Confidence 5443 346699999873
No 271
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.72 E-value=0.042 Score=58.03 Aligned_cols=91 Identities=21% Similarity=0.208 Sum_probs=52.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhcccccccc----CeeEEEEeCCccCHHHHHHHHHHHhcCCC------------CCC
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHF----EKRIWVCVSDPFDEFRIAKAIIEALEGST------------PSL 186 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f----~~~~wv~~s~~~~~~~~~~~i~~~l~~~~------------~~~ 186 (854)
.-.++.|+|..|+|||||+..++......... ..++|++....+....+ ..+++..+... ...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 56899999999999999999888742111111 24588887665443333 33443332110 001
Q ss_pred ccHHHHHHHHHHHhc------CCeEEEEEecCCC
Q 003037 187 GELNSLLERIYASIA------RKKFLLVLDDVWT 214 (854)
Q Consensus 187 ~~~~~~~~~l~~~l~------~k~~LlVlDdv~~ 214 (854)
....++...+...+. .+.-+||+|.+-.
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 112233444445554 4688999999843
No 272
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.51 E-value=0.026 Score=58.02 Aligned_cols=87 Identities=16% Similarity=0.091 Sum_probs=45.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCc-cCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDP-FDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIA 201 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 201 (854)
...+++|+|.+|+||||++..++........ ..+..+..... ....+.+....+..+.......+...+...+. .+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~-~~- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKE-LF- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHH-HG-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHH-Hh-
Confidence 4569999999999999999888763221111 23455554332 22333333333333322211223334433333 33
Q ss_pred CCeEEEEEecC
Q 003037 202 RKKFLLVLDDV 212 (854)
Q Consensus 202 ~k~~LlVlDdv 212 (854)
.+.=++|+|-.
T Consensus 181 ~~~dlvIiDT~ 191 (296)
T 2px0_A 181 SEYDHVFVDTA 191 (296)
T ss_dssp GGSSEEEEECC
T ss_pred cCCCEEEEeCC
Confidence 44568889943
No 273
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.45 E-value=0.065 Score=53.46 Aligned_cols=23 Identities=39% Similarity=0.612 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
-.+++|+|+.|+|||||++.++.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999976
No 274
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=95.39 E-value=0.26 Score=65.10 Aligned_cols=138 Identities=16% Similarity=0.117 Sum_probs=74.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCCe
Q 003037 125 QVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASIARKK 204 (854)
Q Consensus 125 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 204 (854)
+-|.++|++|+|||++|+.+... . ..+ ..+.++.+...+...+...+-..+..........-. -.-.+++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~--~-~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~------P~~~gk~ 1337 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRN--S-SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLL------PKSDIKN 1337 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS--C-SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEE------EBSSSSC
T ss_pred CeEEEECCCCCCHHHHHHHHHhc--C-CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCcccc------CCCCCce
Confidence 35779999999999999777663 1 122 345677777777766655555444321100000000 0003678
Q ss_pred EEEEEecCCCcC------hhhHHHHHHhhcCCC-----C-------CcEEEEecccHH-------HHhh-ccCcceEecC
Q 003037 205 FLLVLDDVWTED------YNKWETFQRCLKNGL-----R-------GSKILVTTRKMT-------VAQM-MQSNDVILIR 258 (854)
Q Consensus 205 ~LlVlDdv~~~~------~~~~~~l~~~l~~~~-----~-------gs~ilvTtR~~~-------v~~~-~~~~~~~~l~ 258 (854)
.++.+||+.-.. ....+.+++.+..++ . +..+|.++ ++. +... ......+.+.
T Consensus 1338 ~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~-Npp~~gGR~~l~~rllRrf~vi~i~ 1416 (2695)
T 4akg_A 1338 LVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGAC-NPPTDPGRIPMSERFTRHAAILYLG 1416 (2695)
T ss_dssp EEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEE-CCTTSTTCCCCCHHHHTTEEEEECC
T ss_pred EEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEec-CCCccCCCccCChhhhheeeEEEeC
Confidence 999999963221 134556666654321 1 12333343 322 1111 1223567788
Q ss_pred CCCHHHHHHHHHHHh
Q 003037 259 ELSEQACWSLFEQLA 273 (854)
Q Consensus 259 ~L~~~e~~~l~~~~~ 273 (854)
..+.++-..+|....
T Consensus 1417 ~P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1417 YPSGKSLSQIYEIYY 1431 (2695)
T ss_dssp CCTTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 888887777776553
No 275
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.36 E-value=0.13 Score=53.43 Aligned_cols=53 Identities=13% Similarity=0.068 Sum_probs=38.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEAL 179 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 179 (854)
.-.++.|.|.+|+||||+|..++.+....+ ..++|++.. .+..++...+....
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 456789999999999999988876422222 567788766 46777777777654
No 276
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.23 E-value=0.003 Score=60.15 Aligned_cols=23 Identities=22% Similarity=0.010 Sum_probs=19.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHhc
Q 003037 125 QVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 125 ~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.++.|+|+.|+||||++..++..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999999666553
No 277
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.22 E-value=0.079 Score=54.21 Aligned_cols=81 Identities=16% Similarity=0.140 Sum_probs=44.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhcccccc-ccCeeEEEEeCCccCHHHHHHHHHHHh------cC-CCCCCccHHHHH
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNNNDVIN-HFEKRIWVCVSDPFDEFRIAKAIIEAL------EG-STPSLGELNSLL 193 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~f~~~~wv~~s~~~~~~~~~~~i~~~l------~~-~~~~~~~~~~~~ 193 (854)
....+|+|+|..|+||||||+.+.......+ ....+..|+....+-.......+.... .. ..+...+.+.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~ 108 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQ 108 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHH
Confidence 4678999999999999999988876322111 123344445554443344444443321 10 123445555555
Q ss_pred HHHHHHhcC
Q 003037 194 ERIYASIAR 202 (854)
Q Consensus 194 ~~l~~~l~~ 202 (854)
+.+.....+
T Consensus 109 ~~l~~l~~g 117 (290)
T 1odf_A 109 EVLNTIFNN 117 (290)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHhhcc
Confidence 555554333
No 278
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.22 E-value=0.016 Score=56.37 Aligned_cols=39 Identities=26% Similarity=0.231 Sum_probs=29.0
Q ss_pred HHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 105 EKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 105 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
-+++|.+.+... .....+|+|+|..|+|||||++.+..-
T Consensus 7 ~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 7 LCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 445555655432 135679999999999999999998773
No 279
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.19 E-value=0.055 Score=56.47 Aligned_cols=54 Identities=11% Similarity=0.014 Sum_probs=38.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALE 180 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 180 (854)
.-.++.|.|.+|+||||+|..++..... .=..++|++.. .+..++...++....
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlE--ms~~ql~~Rlls~~~ 98 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLE--MSAEQLALRALSDLT 98 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESS--SCHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCC--CCHHHHHHHHHHHhh
Confidence 3457889999999999999888775222 22356676654 467788888776543
No 280
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.11 E-value=0.16 Score=50.98 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
-.+++|+|+.|+|||||.+.++.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 34799999999999999999986
No 281
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.08 E-value=0.071 Score=57.17 Aligned_cols=57 Identities=16% Similarity=0.193 Sum_probs=37.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccc----cccCeeEEEEeCCccCHHHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVI----NHFEKRIWVCVSDPFDEFRIAKAIIEALE 180 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 180 (854)
.-.++.|+|.+|+|||||+..++-..... +.-..++|++....++...+ ..+++.++
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~g 237 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFG 237 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcC
Confidence 45689999999999999999765321111 12346889887776655543 33555554
No 282
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.05 E-value=0.068 Score=55.10 Aligned_cols=108 Identities=17% Similarity=0.194 Sum_probs=57.5
Q ss_pred hhHHHHHHHHhcccccc--cCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHH--HHHHHHHHH
Q 003037 103 DEEKNTLKSKLLCESSE--QQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEF--RIAKAIIEA 178 (854)
Q Consensus 103 ~~~~~~l~~~L~~~~~~--~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~--~~~~~i~~~ 178 (854)
+.-.+.|.+.+.....- ......++.|+|.+|+||||++..++.. ....-..+.++.... +... +.+...++.
T Consensus 81 ~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~--l~~~g~kV~lv~~D~-~r~~a~eqL~~~~~~ 157 (306)
T 1vma_A 81 ESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKM--FVDEGKSVVLAAADT-FRAAAIEQLKIWGER 157 (306)
T ss_dssp HHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEECT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHH--HHhcCCEEEEEcccc-ccHHHHHHHHHHHHH
Confidence 34455666666432210 0235789999999999999999988874 222222345555432 2222 223344444
Q ss_pred hcCC---CCCCccHHHH-HHHHHHHhcCCeEEEEEecCC
Q 003037 179 LEGS---TPSLGELNSL-LERIYASIARKKFLLVLDDVW 213 (854)
Q Consensus 179 l~~~---~~~~~~~~~~-~~~l~~~l~~k~~LlVlDdv~ 213 (854)
.+.. .....+...+ ...+...+....-++|+|-.-
T Consensus 158 ~gl~~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 158 VGATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTAG 196 (306)
T ss_dssp HTCEEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECC
T ss_pred cCCcEEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 4322 1112233322 334555455566688899763
No 283
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.92 E-value=0.28 Score=50.07 Aligned_cols=53 Identities=13% Similarity=0.093 Sum_probs=32.6
Q ss_pred HHHHHhcCCeEEEEEecCCC-cChhhHHHHHHhh-cCCCCCcEEEEecccHHHHh
Q 003037 195 RIYASIARKKFLLVLDDVWT-EDYNKWETFQRCL-KNGLRGSKILVTTRKMTVAQ 247 (854)
Q Consensus 195 ~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l-~~~~~gs~ilvTtR~~~v~~ 247 (854)
.+.+.+..++=+++||.--. -|...-..+...+ .....|..||++|-+.....
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~ 223 (290)
T 2bbs_A 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK 223 (290)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH
T ss_pred HHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH
Confidence 34556667788999998643 2344445565543 23334667888887766554
No 284
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.89 E-value=0.013 Score=55.25 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=20.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHhc
Q 003037 125 QVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 125 ~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.+|.|+|++|+||||+|+.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999873
No 285
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.82 E-value=0.028 Score=57.68 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=23.0
Q ss_pred CCCeEEEEEEecCCCcHHHHHHHHHh
Q 003037 121 QNAVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 121 ~~~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.....+|.|.|++|+||||+|+.+..
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999999999987
No 286
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.81 E-value=0.02 Score=61.24 Aligned_cols=50 Identities=26% Similarity=0.250 Sum_probs=36.2
Q ss_pred ccccchhHHHHHHHHhcccc---------cccCCCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 98 EVRGRDEEKNTLKSKLLCES---------SEQQNAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 98 ~~vGr~~~~~~l~~~L~~~~---------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.++|.+..++.+...+.... .......+.|.|+|++|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999998888773100 000113456889999999999999999984
No 287
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.80 E-value=0.017 Score=55.30 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
...+++|+|+.|+|||||++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4568999999999999999999873
No 288
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.74 E-value=0.016 Score=54.67 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHh
Q 003037 125 QVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 125 ~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 289
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.65 E-value=0.04 Score=60.92 Aligned_cols=107 Identities=18% Similarity=0.171 Sum_probs=55.4
Q ss_pred EEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHH---------
Q 003037 126 VISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERI--------- 196 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l--------- 196 (854)
.+.|.|.+|+||||++..+... ........+.+...... ....+.+.++.. ..++......-
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~--l~~~~~~~il~~a~T~~----Aa~~l~~~~~~~---~~T~h~~~~~~~~~~~~~~~ 117 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEA--LISTGETGIILAAPTHA----AKKILSKLSGKE---ASTIHSILKINPVTYEENVL 117 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH--HHHTTCCCEEEEESSHH----HHHHHHHHHSSC---EEEHHHHHTEEEEECSSCEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHH--HHhcCCceEEEecCcHH----HHHHHHhhhccc---hhhHHHHhccCcccccccch
Confidence 8899999999999999888874 22222223333333321 122222222211 11111110000
Q ss_pred ----HHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccHH
Q 003037 197 ----YASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKMT 244 (854)
Q Consensus 197 ----~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 244 (854)
......+.-++|+|++..-+...+..+...++ .+.++++.--...
T Consensus 118 ~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~---~~~~~~~vGD~~Q 166 (459)
T 3upu_A 118 FEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIP---PWCTIIGIGDNKQ 166 (459)
T ss_dssp EEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSC---TTCEEEEEECTTS
T ss_pred hcccccccccCCCEEEEECchhCCHHHHHHHHHhcc---CCCEEEEECCHHH
Confidence 00001134589999987666666777776664 4667777665433
No 290
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.65 E-value=0.15 Score=50.91 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhc
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
-.+++|+|+.|+|||||.+.++.-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999873
No 291
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.64 E-value=0.039 Score=57.85 Aligned_cols=53 Identities=13% Similarity=-0.105 Sum_probs=34.0
Q ss_pred HHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhcccc-ccccCeeEEEEeCCcc
Q 003037 108 TLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDV-INHFEKRIWVCVSDPF 166 (854)
Q Consensus 108 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~f~~~~wv~~s~~~ 166 (854)
++++.+..-. +-..++|+|.+|+|||||++.+.+.... ...+. ++++-+++..
T Consensus 163 raID~~~pi~-----rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~ 216 (422)
T 3ice_A 163 RVLDLASPIG-----RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERP 216 (422)
T ss_dssp HHHHHHSCCB-----TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCH
T ss_pred eeeeeeeeec-----CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCCh
Confidence 5556665443 3457899999999999999988873111 11222 4456677643
No 292
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.62 E-value=0.24 Score=52.03 Aligned_cols=54 Identities=24% Similarity=0.217 Sum_probs=32.6
Q ss_pred HHHHHhcCCeEEEEEecCCC-cChhhHHHHHHhhcCC--CCCcEEEEecccHHHHhh
Q 003037 195 RIYASIARKKFLLVLDDVWT-EDYNKWETFQRCLKNG--LRGSKILVTTRKMTVAQM 248 (854)
Q Consensus 195 ~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~~ 248 (854)
.+.+.|..++-+|++|.--. -+...-..+...+..- ..|..||++|-+..++..
T Consensus 173 aIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~ 229 (366)
T 3tui_C 173 AIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKR 229 (366)
T ss_dssp HHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHH
T ss_pred HHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence 45567778888999998633 2333333444444321 236678888877666544
No 293
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.61 E-value=0.017 Score=54.09 Aligned_cols=21 Identities=29% Similarity=0.124 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHHh
Q 003037 126 VISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~ 146 (854)
+|.|.|+.|+||||+|+.+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 294
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.60 E-value=0.021 Score=55.19 Aligned_cols=25 Identities=36% Similarity=0.345 Sum_probs=22.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
...+|+|+|+.|+||||+|+.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999874
No 295
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.60 E-value=0.13 Score=55.42 Aligned_cols=25 Identities=36% Similarity=0.279 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
...++.|+|.+|+||||++..++..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999888774
No 296
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.60 E-value=0.016 Score=55.94 Aligned_cols=23 Identities=39% Similarity=0.382 Sum_probs=21.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
..+|.|+|+.|+||||+|+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 297
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.55 E-value=0.033 Score=58.03 Aligned_cols=46 Identities=22% Similarity=0.164 Sum_probs=31.9
Q ss_pred ccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 100 RGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 100 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
|+-++-.+++.+.+...-. .+....|.|+|++|+||||+++.++..
T Consensus 2 ~~~~~L~~~il~~l~~~i~--~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIE--DNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTT--TCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhc--cCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 4445556666666542221 234567899999999999999988873
No 298
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.55 E-value=0.098 Score=53.84 Aligned_cols=24 Identities=33% Similarity=0.618 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.-.+++|+|+.|+|||||++.+..
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 456899999999999999999976
No 299
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.50 E-value=0.21 Score=51.29 Aligned_cols=87 Identities=20% Similarity=0.102 Sum_probs=48.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCcc-CHHHHHHHHHHHhcCC---CCCCccHHHHHHHHHHH
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPF-DEFRIAKAIIEALEGS---TPSLGELNSLLERIYAS 199 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~---~~~~~~~~~~~~~l~~~ 199 (854)
..+++++|.+|+||||++..++.. ....-..+.++...... .....+....+..+.. .....+...+.....+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~--~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF--YKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH--HHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 789999999999999999888763 22222245566554322 2223344444444432 11123444444444444
Q ss_pred hc-CCeEEEEEecC
Q 003037 200 IA-RKKFLLVLDDV 212 (854)
Q Consensus 200 l~-~k~~LlVlDdv 212 (854)
++ ...=++|+|-.
T Consensus 176 ~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 176 FLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 44 33347888875
No 300
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.42 E-value=0.054 Score=47.95 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=40.1
Q ss_pred EEEecCCCCccccccccc--cccccccccCCCceeeecCCCCcccchh-hhcCCCCcEEeecCcc
Q 003037 512 TLKITGISGEKRYFRIIV--EIPKEIKKLIHLRFLKLVWLDIEELPET-CCELFNVQTLEVLDCR 573 (854)
Q Consensus 512 ~L~L~~~~~~~~~~~~i~--~lP~~i~~L~~L~~L~L~~~~i~~lP~~-i~~L~~L~~L~l~~~~ 573 (854)
+++.+++. ++ .+|..+. .+|++|+|++|.|+.+|.. +..+++|++|+|.+|.
T Consensus 12 ~v~Cs~~~--------L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRG--------LTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSC--------CCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCC--------CccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 56677766 66 7776543 4688899999999888865 5778889999998886
No 301
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.42 E-value=0.23 Score=51.66 Aligned_cols=26 Identities=38% Similarity=0.358 Sum_probs=23.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
....+++|+|+.|+||||+++.++..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999988873
No 302
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.41 E-value=0.024 Score=54.23 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
...+|.|.|++|+||||+|+.+...
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999873
No 303
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.39 E-value=0.032 Score=56.16 Aligned_cols=41 Identities=22% Similarity=0.187 Sum_probs=28.6
Q ss_pred HHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 106 KNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 106 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.+.+...+...... .....+|.|+|++|+||||+|+.+...
T Consensus 15 ~~~~~~~~~~~~~~-~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 15 LARNLRSLTRGKKS-SKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp HHHHHHHHHTTCCC-CSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHccCCc-ccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34444444433221 345789999999999999999999873
No 304
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.33 E-value=0.019 Score=54.51 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.+.|.|+|+.|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999987
No 305
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.31 E-value=0.02 Score=54.23 Aligned_cols=24 Identities=17% Similarity=0.423 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhc
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.++++|+|+.|+|||||++.+...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 458999999999999999999873
No 306
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.30 E-value=0.018 Score=53.95 Aligned_cols=22 Identities=36% Similarity=0.421 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHh
Q 003037 125 QVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 125 ~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.+|+|+|+.|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 307
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.26 E-value=0.16 Score=55.21 Aligned_cols=43 Identities=23% Similarity=0.224 Sum_probs=29.6
Q ss_pred HHHHHHHHhcccccc---cCCCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 105 EKNTLKSKLLCESSE---QQNAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 105 ~~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
-.+++.+.|...... .....++|.|+|.+|+||||+|..++..
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345566666432110 0235789999999999999999888764
No 308
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.24 E-value=0.097 Score=56.74 Aligned_cols=50 Identities=24% Similarity=0.267 Sum_probs=32.8
Q ss_pred EEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCcc-CHHHHHHHHH
Q 003037 126 VISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPF-DEFRIAKAII 176 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~ 176 (854)
.++|+|.+|+|||||++.+..+... ..-+..+++-+++.. +..+++.++.
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~-~~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQ-EHGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHH-HTCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhh-ccCcEEEEeeeccCchHHHHHHHHhh
Confidence 5789999999999999988875222 122455677777654 3344444443
No 309
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.22 E-value=0.34 Score=52.25 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.+.+|.++|.+|+||||++..++..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 4789999999999999999888763
No 310
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.18 E-value=0.03 Score=52.59 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
...+++|+|+.|+||||+|+.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 311
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.15 E-value=0.026 Score=58.60 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=27.7
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeC
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVS 163 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 163 (854)
++.+||+|+|-||+||||.|..+..- ....=..+.-|++.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~a--LA~~GkkVllID~D 85 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCD 85 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEES
T ss_pred CCceEEEEECCCccCHHHHHHHHHHH--HHHCCCeEEEEecC
Confidence 46899999999999999999766552 22222245566655
No 312
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.14 E-value=0.032 Score=53.08 Aligned_cols=26 Identities=35% Similarity=0.356 Sum_probs=22.8
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
....+|.|.|++|+||||+|+.++..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999874
No 313
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.14 E-value=0.19 Score=51.53 Aligned_cols=87 Identities=17% Similarity=0.103 Sum_probs=46.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHH--HHHHHHHHHhcCCC---CCCccHHHHHHHHH
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEF--RIAKAIIEALEGST---PSLGELNSLLERIY 197 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~--~~~~~i~~~l~~~~---~~~~~~~~~~~~l~ 197 (854)
...+++|+|.+|+||||++..++.. ....-..+.++.... .... ..+..+.+..+... ....+..++.....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~--~~~~~~~v~l~~~d~-~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l 173 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY--YKGKGRRPLLVAADT-QRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH--HHHTTCCEEEEECCS-SCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEecCCc-ccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHH
Confidence 4679999999999999999988874 222212344554432 2222 12333344443321 11223334433333
Q ss_pred HHh-cCCeEEEEEecC
Q 003037 198 ASI-ARKKFLLVLDDV 212 (854)
Q Consensus 198 ~~l-~~k~~LlVlDdv 212 (854)
..+ ....=++|+|-.
T Consensus 174 ~~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 174 EKARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHHTCCEEEEECC
T ss_pred HHHHhCCCCEEEEeCC
Confidence 333 344557888975
No 314
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.12 E-value=0.15 Score=50.64 Aligned_cols=40 Identities=30% Similarity=0.326 Sum_probs=28.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCC
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSD 164 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 164 (854)
.-.++.|.|.+|+||||||.+++.. ....-..++|++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALEE 61 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccC
Confidence 3458999999999999999877653 212223677877654
No 315
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.11 E-value=0.028 Score=53.69 Aligned_cols=23 Identities=22% Similarity=0.353 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHhc
Q 003037 125 QVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 125 ~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.+|.|.|+.|+||||+|+.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999873
No 316
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.05 E-value=0.29 Score=52.94 Aligned_cols=65 Identities=23% Similarity=0.211 Sum_probs=44.5
Q ss_pred HHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCcc-CHHHHHHHHHHH
Q 003037 108 TLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPF-DEFRIAKAIIEA 178 (854)
Q Consensus 108 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~ 178 (854)
+.++.|..-. +-.-++|+|.+|+|||+|++.+.+.. .+.+-+.++++-+.+.. .+.++.+++.+.
T Consensus 142 r~ID~l~pig-----kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYA-----KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEE-----TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccc-----cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 5667776543 34458899999999999999988742 12334567788888754 445566666554
No 317
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.04 E-value=0.35 Score=50.75 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
-.+++|+|+.|+|||||.+.++.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999999976
No 318
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.04 E-value=0.025 Score=54.61 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
...+|+|+|+.|+|||||++.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999987
No 319
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.01 E-value=0.033 Score=53.78 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=22.8
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHh
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.+..+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999987
No 320
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.01 E-value=0.2 Score=54.00 Aligned_cols=89 Identities=17% Similarity=0.037 Sum_probs=46.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCc-cCHHHHHHHHHHHhcCCC---CCCccHHHHHHHHHH
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDP-FDEFRIAKAIIEALEGST---PSLGELNSLLERIYA 198 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~~ 198 (854)
..++|.++|.+|+||||++..++... ...-..+..++.... ......+....+..+.+. ....+...+......
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l--~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~ 173 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY--KKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVD 173 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH--HHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHH
Confidence 57899999999999999998887642 222223444444321 122233333344443321 112233333322233
Q ss_pred Hhc-CCeEEEEEecCC
Q 003037 199 SIA-RKKFLLVLDDVW 213 (854)
Q Consensus 199 ~l~-~k~~LlVlDdv~ 213 (854)
.+. ...=++|+|-..
T Consensus 174 ~a~~~~~DvvIIDTaG 189 (433)
T 3kl4_A 174 IFVKNKMDIIIVDTAG 189 (433)
T ss_dssp HTTTTTCSEEEEEECC
T ss_pred HHHhcCCCEEEEECCC
Confidence 333 344467888764
No 321
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.97 E-value=0.16 Score=56.69 Aligned_cols=54 Identities=13% Similarity=0.001 Sum_probs=38.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEAL 179 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 179 (854)
.-.++.|.|.+|+||||||.+++.+.... +=..++|++... +..++...++...
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 44688999999999999998887742221 123577877654 5677777776544
No 322
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.93 E-value=0.024 Score=53.64 Aligned_cols=25 Identities=36% Similarity=0.446 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
..++|.|+|++|+||||+|+.+...
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 3467889999999999999999863
No 323
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.89 E-value=0.026 Score=52.84 Aligned_cols=24 Identities=29% Similarity=0.624 Sum_probs=20.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
...+++|+|+.|+|||||++.++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 457899999999999999997553
No 324
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.88 E-value=0.029 Score=54.54 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
...+++|+|+.|+|||||++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 4568999999999999999999874
No 325
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.88 E-value=0.032 Score=53.17 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHh
Q 003037 125 QVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 125 ~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 326
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.88 E-value=0.036 Score=53.73 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
...+|+|+|+.|+||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999987
No 327
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.88 E-value=0.35 Score=56.43 Aligned_cols=99 Identities=15% Similarity=0.222 Sum_probs=58.4
Q ss_pred ccCCccccchhHHHHHHHHhcccccc-------cCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCcc
Q 003037 94 IDVSEVRGRDEEKNTLKSKLLCESSE-------QQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPF 166 (854)
Q Consensus 94 ~~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 166 (854)
.....+.|.++.++.|.+.+.-+... +....+-|.++|++|.|||.+|+++++. .... ++.++.
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e--~~~~-----f~~v~~-- 544 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIKG-- 544 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT--TTCE-----EEECCH--
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH--hCCc-----eEEecc--
Confidence 34456788888888887765432110 0223455789999999999999999994 3222 333331
Q ss_pred CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHh-cCCeEEEEEecCC
Q 003037 167 DEFRIAKAIIEALEGSTPSLGELNSLLERIYASI-ARKKFLLVLDDVW 213 (854)
Q Consensus 167 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~ 213 (854)
. +++ ..... +.+.....+.+.. +..+++|+||++.
T Consensus 545 --~----~l~----s~~vG--ese~~vr~lF~~Ar~~~P~IifiDEiD 580 (806)
T 3cf2_A 545 --P----ELL----TMWFG--ESEANVREIFDKARQAAPCVLFFDELD 580 (806)
T ss_dssp --H----HHH----TTTCS--SCHHHHHHHHHHHHTTCSEEEECSCGG
T ss_pred --c----hhh----ccccc--hHHHHHHHHHHHHHHcCCceeechhhh
Confidence 1 111 11111 1123344444433 4578999999983
No 328
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.87 E-value=0.21 Score=52.30 Aligned_cols=36 Identities=22% Similarity=0.031 Sum_probs=28.0
Q ss_pred HHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 107 NTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 107 ~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
-++++.+..-. +-..++|+|.+|+|||+|++.+.+.
T Consensus 163 iraID~l~Pig-----rGQR~lIfg~~g~GKT~Ll~~Ia~~ 198 (427)
T 3l0o_A 163 TRLIDLFAPIG-----KGQRGMIVAPPKAGKTTILKEIANG 198 (427)
T ss_dssp HHHHHHHSCCB-----TTCEEEEEECTTCCHHHHHHHHHHH
T ss_pred chhhhhccccc-----CCceEEEecCCCCChhHHHHHHHHH
Confidence 46777776543 3345789999999999999988874
No 329
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.87 E-value=0.025 Score=54.69 Aligned_cols=24 Identities=21% Similarity=0.392 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhc
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
..+|+|.|+.|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999873
No 330
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.84 E-value=0.035 Score=54.02 Aligned_cols=24 Identities=42% Similarity=0.350 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
...+|+|+|..|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999887
No 331
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.82 E-value=0.34 Score=52.90 Aligned_cols=43 Identities=30% Similarity=0.383 Sum_probs=29.8
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccC
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFD 167 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 167 (854)
....+++|+|..|+|||||++.++.. .. ...+.+++...+.+.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgl--l~-~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQ--FE-QQGKSVMLAAGDTFR 333 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHH--HH-HTTCCEEEECCCTTC
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHH--hh-hcCCeEEEecCcccc
Confidence 35689999999999999999998873 22 123455554444443
No 332
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.82 E-value=0.03 Score=53.14 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
....|+|+|+.|+||||+|+.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999987
No 333
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.80 E-value=0.031 Score=53.28 Aligned_cols=23 Identities=39% Similarity=0.706 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHhc
Q 003037 125 QVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 125 ~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.+|.|.|++|+||||+|+.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999873
No 334
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.80 E-value=0.034 Score=53.23 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
..+|+|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 335
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.78 E-value=0.033 Score=55.97 Aligned_cols=23 Identities=22% Similarity=0.125 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHhc
Q 003037 125 QVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 125 ~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.+|.|.|+.|+||||||+.++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999999873
No 336
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.73 E-value=0.032 Score=53.97 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
..+++|+|+.|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 45899999999999999999987
No 337
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.72 E-value=0.04 Score=53.21 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=22.4
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHh
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.+..+|+|.|+.|+||||+|+.+.+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999986
No 338
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.68 E-value=0.04 Score=53.59 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=23.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.+.++|.|.|++|+||||.|+.++..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999999873
No 339
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.68 E-value=0.033 Score=53.34 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
+..+|+|.|+.|+||||+|+.+.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
No 340
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.66 E-value=0.028 Score=54.44 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
..++|.|+|++|+||||+++.+...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999874
No 341
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.65 E-value=0.035 Score=51.74 Aligned_cols=24 Identities=38% Similarity=0.414 Sum_probs=20.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
...+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999987
No 342
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.62 E-value=0.056 Score=53.12 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
....|.|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5688999999999999999988874
No 343
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.62 E-value=0.034 Score=53.82 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=21.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhc
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
..+++|+|+.|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999874
No 344
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.60 E-value=0.03 Score=52.61 Aligned_cols=21 Identities=38% Similarity=0.512 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHh
Q 003037 126 VISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.|.|.|++|+||||+|+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 345
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.58 E-value=0.043 Score=52.08 Aligned_cols=23 Identities=30% Similarity=0.281 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
..+|+|.|+.|+||||+|+.+.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999986
No 346
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.58 E-value=0.039 Score=55.74 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
+..+|.|.|++|+||||+|+.+...
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999873
No 347
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.55 E-value=0.038 Score=53.44 Aligned_cols=21 Identities=43% Similarity=0.491 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHHh
Q 003037 126 VISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~ 146 (854)
+|+|+|+.|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999876
No 348
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.54 E-value=0.04 Score=55.38 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=22.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHh
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
....+|+|.|+.|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999877
No 349
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.51 E-value=0.037 Score=53.40 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHhc
Q 003037 126 VISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999999873
No 350
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.49 E-value=0.028 Score=53.52 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHhc
Q 003037 125 QVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 125 ~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
++++|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999863
No 351
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.44 E-value=0.042 Score=58.00 Aligned_cols=110 Identities=15% Similarity=0.199 Sum_probs=59.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHH--HHHHHHHHHhcCCCCCCccHHHHHHHHHHHhc
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEF--RIAKAIIEALEGSTPSLGELNSLLERIYASIA 201 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 201 (854)
..+++|+|+.|+|||||.+.+... +.......+ +++.+..... .. ..++.+... .... ......+...|.
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i-~t~ed~~e~~~~~~-~~~v~q~~~-~~~~---~~~~~~La~aL~ 194 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHI-LTIEDPIEFVHESK-KCLVNQREV-HRDT---LGFSEALRSALR 194 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEE-EEEESSCCSCCCCS-SSEEEEEEB-TTTB---SCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEE-EEccCcHHhhhhcc-ccceeeeee-cccc---CCHHHHHHHHhh
Confidence 458999999999999999988763 211111222 2222211100 00 000000000 0011 223447888888
Q ss_pred CCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccHHHH
Q 003037 202 RKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKMTVA 246 (854)
Q Consensus 202 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 246 (854)
..+=+|++|..- +.+.++.+..... .|.-||+|+-....+
T Consensus 195 ~~PdvillDEp~--d~e~~~~~~~~~~---~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 195 EDPDIILVGEMR--DLETIRLALTAAE---TGHLVFGTLHTTSAA 234 (356)
T ss_dssp SCCSEEEESCCC--SHHHHHHHHHHHH---TTCEEEEEESCSSHH
T ss_pred hCcCEEecCCCC--CHHHHHHHHHHHh---cCCEEEEEEccChHH
Confidence 999999999995 3455555555433 355688888754433
No 352
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.43 E-value=0.043 Score=53.13 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHh
Q 003037 125 QVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 125 ~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 353
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.41 E-value=0.039 Score=54.35 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHh
Q 003037 125 QVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 125 ~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 354
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.40 E-value=0.28 Score=53.70 Aligned_cols=54 Identities=9% Similarity=-0.041 Sum_probs=37.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEAL 179 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 179 (854)
.-.++.|.|.+|+||||+|..++...... .-..++|++... +..++...++...
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE~--~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLEM--PAAQLTLRMMCSE 252 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECCC--CHHHHHHHHHHHH
Confidence 34588999999999999998887742211 123577776653 5677777776544
No 355
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.39 E-value=0.34 Score=51.58 Aligned_cols=24 Identities=33% Similarity=0.392 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.-.+++|+|+.|+|||||.+.++.
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHhC
Confidence 445899999999999999999986
No 356
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.38 E-value=0.22 Score=51.70 Aligned_cols=26 Identities=38% Similarity=0.487 Sum_probs=22.9
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
...++++|+|.+|+||||++..++..
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999888773
No 357
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.34 E-value=0.22 Score=54.08 Aligned_cols=64 Identities=22% Similarity=0.142 Sum_probs=44.3
Q ss_pred HHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCcc-CHHHHHHHHHH
Q 003037 108 TLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPF-DEFRIAKAIIE 177 (854)
Q Consensus 108 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~ 177 (854)
+.++.|..-. +-.-++|.|.+|+|||+|++.+.++. .+.+-+.++++-+.+.. ...++.+++.+
T Consensus 154 rvID~l~pig-----kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 154 KVVNLLAPYR-----RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKE 218 (498)
T ss_dssp TTHHHHSCCC-----TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHH
T ss_pred eEeeeecccc-----cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhc
Confidence 4566666543 33457899999999999999988752 12345678888888765 45566666654
No 358
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.34 E-value=0.065 Score=53.43 Aligned_cols=24 Identities=21% Similarity=0.117 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
...+|+|.|++|+||||+|+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999976
No 359
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.33 E-value=0.033 Score=52.85 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHh
Q 003037 126 VISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~ 146 (854)
+|.|.|++|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 360
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.32 E-value=0.028 Score=53.17 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHh
Q 003037 125 QVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 125 ~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
|.|.|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999999876
No 361
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.32 E-value=0.046 Score=53.08 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhc
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
..+|.|.|+.|+||||+|+.+...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 362
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.27 E-value=0.046 Score=52.15 Aligned_cols=25 Identities=16% Similarity=0.489 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
..++++|+|+.|+|||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4578999999999999999998863
No 363
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.27 E-value=0.41 Score=52.18 Aligned_cols=53 Identities=13% Similarity=-0.002 Sum_probs=36.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEAL 179 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 179 (854)
.-.++.|.|.+|+||||+|.+++.+.... -..++|++... +..++...++...
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm--s~~ql~~R~~~~~ 248 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM--GKKENIKRLIVTA 248 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS--CTTHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC--CHHHHHHHHHHHH
Confidence 45688999999999999998887753222 23566766554 4556666666543
No 364
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.26 E-value=0.049 Score=51.97 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
...+|+|.|+.|+||||+|+.+..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 365
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.26 E-value=0.2 Score=56.74 Aligned_cols=105 Identities=15% Similarity=0.188 Sum_probs=54.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHh---
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPSLGELNSLLERIYASI--- 200 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--- 200 (854)
.+++.|.|.+|.||||++..+....... ...+.+........ ..+.+.++.. ..++..+.......+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~---g~~Vl~~ApT~~Aa----~~L~e~~~~~---a~Tih~ll~~~~~~~~~~ 273 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESL---GLEVGLCAPTGKAA----RRLGEVTGRT---ASTVHRLLGYGPQGFRHN 273 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHH----HHHHHHHTSC---EEEHHHHTTEETTEESCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEecCcHHHH----HHhHhhhccc---HHHHHHHHcCCcchhhhh
Confidence 3578899999999999998887632211 23445554433222 2233333221 111111110000000
Q ss_pred ---cCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecc
Q 003037 201 ---ARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTR 241 (854)
Q Consensus 201 ---~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR 241 (854)
..+.-+||+|.+..-+...+..+...++ .+.++|+.--
T Consensus 274 ~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD 314 (574)
T 3e1s_A 274 HLEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGD 314 (574)
T ss_dssp SSSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEEC
T ss_pred hcccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEec
Confidence 0123489999986555555566655544 5667777654
No 366
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.25 E-value=0.045 Score=52.78 Aligned_cols=24 Identities=29% Similarity=0.224 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
...+|.|.|++|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 455899999999999999999987
No 367
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.18 E-value=0.056 Score=51.58 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=22.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
...+|+|+|+.|+||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999987
No 368
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.17 E-value=0.03 Score=52.96 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=17.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhc
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
..+|.|.|+.|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999863
No 369
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.17 E-value=0.047 Score=52.40 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
..+|+|.|++|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
No 370
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.16 E-value=0.047 Score=50.80 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHHh
Q 003037 126 VISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 371
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.16 E-value=0.035 Score=53.47 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.++++|+|+.|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35789999999999999999876
No 372
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.10 E-value=0.045 Score=50.72 Aligned_cols=25 Identities=36% Similarity=0.335 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
..+++.|+|..|+|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999998874
No 373
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.09 E-value=0.04 Score=51.55 Aligned_cols=21 Identities=33% Similarity=0.366 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHHh
Q 003037 126 VISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~ 146 (854)
+|.|.|+.|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 374
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.07 E-value=0.06 Score=49.47 Aligned_cols=25 Identities=32% Similarity=0.315 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.-.+++|+|+.|+|||||++.++.-
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999873
No 375
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.04 E-value=0.067 Score=52.35 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=29.9
Q ss_pred cchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 101 GRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 101 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
+.++..+.+...+. ..+.++|+|+|.+|+|||||+..+...
T Consensus 13 ~~~~~~~~~~~~~~------~~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALR------ESGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHH------HHTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhc------ccCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 34445555555543 125789999999999999999888774
No 376
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.02 E-value=0.1 Score=54.03 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHh
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
....+|+|+|..|+|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999887
No 377
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.00 E-value=0.055 Score=56.04 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=22.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHh
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
....+|+|+|..|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3568999999999999999998887
No 378
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.93 E-value=0.06 Score=50.74 Aligned_cols=25 Identities=28% Similarity=0.309 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
...+|+|.|+.|+||||+++.+...
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568899999999999999999873
No 379
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.90 E-value=0.061 Score=51.16 Aligned_cols=38 Identities=18% Similarity=0.092 Sum_probs=27.6
Q ss_pred HHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 105 EKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 105 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
-+..+..++.. .++...+.|+|++|+||||+|..+++.
T Consensus 44 f~~~l~~~~~~-----iPkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 44 FLGALKSFLKG-----TPKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHHT-----CTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-----CCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 35566666642 123446899999999999999988884
No 380
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.90 E-value=0.83 Score=50.36 Aligned_cols=26 Identities=35% Similarity=0.367 Sum_probs=21.3
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
...++|.|+|.+|+||||++..++..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999888763
No 381
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.89 E-value=0.053 Score=52.80 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
+..+|+|.|+.|+||||+|+.+...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999873
No 382
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.88 E-value=0.21 Score=54.17 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=22.9
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
....+|.|+|++|+||||+|+.++..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 35689999999999999999999873
No 383
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.86 E-value=0.06 Score=53.76 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
...+|+|.|..|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998876
No 384
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=92.86 E-value=0.26 Score=52.33 Aligned_cols=157 Identities=16% Similarity=0.124 Sum_probs=80.3
Q ss_pred CccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHH
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAII 176 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 176 (854)
..++|....+.++...+..... ....|.|.|.+|.||+++|+.+.......+ ..+-+++..-. ...+...+
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~----~~~~vli~GesGtGKe~lAr~ih~~s~r~~---~fv~vnc~~~~--~~~~~~~l 199 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK----SKAPVLITGESGTGKEIVARLIHRYSGRKG---AFVDLNCASIP--QELAESEL 199 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT----SCSCEEEECCTTSSHHHHHHHHHHHHCCCS---CEEEEESSSSC--TTTHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhc----cchhheEEeCCCchHHHHHHHHHHhccccC---CcEEEEcccCC--hHHHHHHh
Confidence 4678888777777666543332 122366999999999999999987422222 22333333321 11221111
Q ss_pred HHhcCCCC--CC--ccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCC-----------CCcEEEEecc
Q 003037 177 EALEGSTP--SL--GELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGL-----------RGSKILVTTR 241 (854)
Q Consensus 177 ~~l~~~~~--~~--~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR 241 (854)
++.... .. ..... .+ +. ...-.|+||++.+-.......+...+..+. ...|||.+|.
T Consensus 200 --fg~~~g~~tga~~~~~g---~~-~~--a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~ 271 (368)
T 3dzd_A 200 --FGHEKGAFTGALTRKKG---KL-EL--ADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATN 271 (368)
T ss_dssp --HEECSCSSSSCCCCEEC---HH-HH--TTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEES
T ss_pred --cCccccccCCcccccCC---hH-hh--cCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecC
Confidence 111110 00 00000 11 11 112358999997766667777777775321 1346777665
Q ss_pred cHHHHhhcc-----------CcceEecCCCCH--HHHHHHHH
Q 003037 242 KMTVAQMMQ-----------SNDVILIRELSE--QACWSLFE 270 (854)
Q Consensus 242 ~~~v~~~~~-----------~~~~~~l~~L~~--~e~~~l~~ 270 (854)
..-...... ....+.++||.+ +|...|+.
T Consensus 272 ~~l~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~ 313 (368)
T 3dzd_A 272 KNLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAE 313 (368)
T ss_dssp SCHHHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHH
T ss_pred CCHHHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHH
Confidence 332111100 123577888877 56555443
No 385
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=92.83 E-value=0.47 Score=46.89 Aligned_cols=100 Identities=19% Similarity=0.150 Sum_probs=53.7
Q ss_pred EEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcC---C--------CC-----CCccHH
Q 003037 127 ISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEG---S--------TP-----SLGELN 190 (854)
Q Consensus 127 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~---~--------~~-----~~~~~~ 190 (854)
+.|+|..|.|||.+|..+.... -..++++ +... .+..++.+.+.. . .. ...+.+
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~-----~~~~liv-~P~~----~L~~q~~~~~~~~~~~~v~~~~g~~~~~~~i~v~T~~ 180 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL-----STPTLIV-VPTL----ALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYD 180 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS-----CSCEEEE-ESSH----HHHHHHHHHHGGGCGGGEEEESSSCBCCCSEEEEEHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHc-----CCCEEEE-eCCH----HHHHHHHHHHHhCCCCeEEEEeCCCCCcCCEEEEeHH
Confidence 6789999999999998877632 1233444 3322 233333333221 1 00 011233
Q ss_pred HHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEec
Q 003037 191 SLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTT 240 (854)
Q Consensus 191 ~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt 240 (854)
.+..... .+.++--+||+|++..-....+..+...++ ...++.+|.
T Consensus 181 ~l~~~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~~---~~~~l~LSA 226 (237)
T 2fz4_A 181 SAYVNAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMSI---APFRLGLTA 226 (237)
T ss_dssp HHHHTHH-HHTTTCSEEEEECSSCCCTTTHHHHHHTCC---CSEEEEEEE
T ss_pred HHHhhHH-HhcccCCEEEEECCccCCChHHHHHHHhcc---CCEEEEEec
Confidence 3333332 334456699999997755556777666554 233455554
No 386
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.82 E-value=0.055 Score=51.65 Aligned_cols=22 Identities=41% Similarity=0.620 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHHhc
Q 003037 126 VISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
+|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 387
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.80 E-value=0.054 Score=54.18 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=21.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
..+|+|+|+.|+|||||++.++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999985
No 388
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.79 E-value=0.056 Score=52.42 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.-.+++|+|+.|+|||||++.+..-
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4568999999999999999999873
No 389
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.75 E-value=0.08 Score=52.39 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=25.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEE
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWV 160 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv 160 (854)
.-.+++|+|+.|+|||||++.+..- .....+.+++
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl---~~p~~G~I~~ 64 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCL---DKPTEGEVYI 64 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS---SCCSEEEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC---CCCCceEEEE
Confidence 3458999999999999999999872 2233455554
No 390
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.74 E-value=0.054 Score=52.64 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
...+|+|.|+.|+||||+|+.+...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999873
No 391
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.68 E-value=0.13 Score=65.68 Aligned_cols=83 Identities=17% Similarity=0.121 Sum_probs=55.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCC-----CCCccHHHHHHHHH
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGST-----PSLGELNSLLERIY 197 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 197 (854)
+.+++.|+|++|+|||+||.++..... ..=..++|+++...++... ++.++.+. ......+.....+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~--~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 567899999999999999988877422 2334678888888776655 44554221 11223455555555
Q ss_pred HHhc-CCeEEEEEecC
Q 003037 198 ASIA-RKKFLLVLDDV 212 (854)
Q Consensus 198 ~~l~-~k~~LlVlDdv 212 (854)
+..+ .+.-+||+|.+
T Consensus 1499 ~lvr~~~~~lVVIDsi 1514 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSV 1514 (2050)
T ss_dssp HHHHHTCCSEEEESCG
T ss_pred HHHhcCCCCEEEEcCh
Confidence 5543 56779999998
No 392
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=92.67 E-value=0.43 Score=47.06 Aligned_cols=89 Identities=18% Similarity=0.164 Sum_probs=46.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHhc-ccccccc-CeeEEEEeCCccCHHHHHHHHHHHhcCCCC---------------C--
Q 003037 125 QVISLVGMGGIGKTTLAQFAYNN-NDVINHF-EKRIWVCVSDPFDEFRIAKAIIEALEGSTP---------------S-- 185 (854)
Q Consensus 125 ~vv~I~G~gGiGKTtLa~~v~~~-~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---------------~-- 185 (854)
+.+.|.|..|+||||++....-+ ....+.. ...+.+..........+.+.+...++.... .
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHA 156 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSS
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCC
Confidence 46889999999999876544332 1111222 223333344433344455555544432200 0
Q ss_pred ---CccHHHHHHHHHHHhcCCeEEEEEecCCC
Q 003037 186 ---LGELNSLLERIYASIARKKFLLVLDDVWT 214 (854)
Q Consensus 186 ---~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 214 (854)
..+.+.+...+...+. +--+||+|.++.
T Consensus 157 ~Ivv~Tpg~l~~~l~~~l~-~~~~lVlDEah~ 187 (235)
T 3llm_A 157 SIMFCTVGVLLRKLEAGIR-GISHVIVDEIHE 187 (235)
T ss_dssp EEEEEEHHHHHHHHHHCCT-TCCEEEECCTTS
T ss_pred eEEEECHHHHHHHHHhhhc-CCcEEEEECCcc
Confidence 1234555555554333 334789999965
No 393
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.66 E-value=0.054 Score=53.36 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=21.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
+...|.|.|++|+||||+|+.+..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999987
No 394
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.62 E-value=0.089 Score=51.64 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
-.+++|+|+.|+|||||++.++.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999987
No 395
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.60 E-value=0.084 Score=52.35 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.8
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHh
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.. .+++|+|+.|+|||||.+.++.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHT
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhC
Confidence 35 7899999999999999999987
No 396
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.59 E-value=0.073 Score=54.37 Aligned_cols=24 Identities=38% Similarity=0.591 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999874
No 397
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.57 E-value=0.057 Score=52.88 Aligned_cols=23 Identities=30% Similarity=0.274 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
...|.|.|++|+||||+|+.++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999987
No 398
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.55 E-value=0.073 Score=51.73 Aligned_cols=25 Identities=32% Similarity=0.275 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
...+|.|.|+.|+||||+|+.+...
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998873
No 399
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=92.54 E-value=0.67 Score=52.68 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.-.+++|+|+.|+|||||++.+..
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 446899999999999999999876
No 400
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.54 E-value=0.061 Score=53.97 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=21.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
..+|+|+|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 401
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.51 E-value=0.05 Score=53.26 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
...+++|+|+.|+|||||++.+...
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3457999999999999999999873
No 402
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.50 E-value=0.057 Score=55.66 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
...+++|+|++|+||||+++.++.-
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4579999999999999999998863
No 403
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.46 E-value=0.076 Score=51.88 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999865
No 404
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.43 E-value=0.091 Score=53.24 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
-.+++|+|+.|+|||||++.+..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 45799999999999999999976
No 405
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.42 E-value=0.091 Score=56.82 Aligned_cols=51 Identities=20% Similarity=0.287 Sum_probs=36.2
Q ss_pred CccccchhHHHHHHHHhccc--------ccccCCCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 97 SEVRGRDEEKNTLKSKLLCE--------SSEQQNAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
..++|.++.++.+...+... .-......+-|.++|++|+||||+|+.++..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 46899998888887766321 0000112456889999999999999999884
No 406
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.37 E-value=0.064 Score=52.42 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.-.+++|+|+.|+|||||++.+...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999998873
No 407
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.36 E-value=0.069 Score=51.11 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHhc
Q 003037 126 VISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 408
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.34 E-value=0.069 Score=52.09 Aligned_cols=21 Identities=38% Similarity=0.485 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHHh
Q 003037 126 VISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999976
No 409
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.31 E-value=0.096 Score=52.75 Aligned_cols=24 Identities=38% Similarity=0.500 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.-.+++|+|+.|+|||||++.++.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 445899999999999999999987
No 410
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.27 E-value=0.07 Score=51.44 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhc
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
..+|+|.|+.|+||||+|+.+.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999999874
No 411
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.27 E-value=0.058 Score=52.91 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=21.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhc
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
...|.|.|++|+||||+|+.++..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999873
No 412
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.13 E-value=0.075 Score=51.82 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHHh
Q 003037 126 VISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999976
No 413
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.05 E-value=0.11 Score=52.43 Aligned_cols=24 Identities=25% Similarity=0.542 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.-.+++|+|+.|+|||||++.+..
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 345899999999999999999987
No 414
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.04 E-value=0.15 Score=54.13 Aligned_cols=38 Identities=21% Similarity=0.331 Sum_probs=27.9
Q ss_pred HHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 106 KNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 106 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
...+.+.+... ..+..+|+|+|.+|+|||||+..+...
T Consensus 65 ~~~~~~~~~~~----~~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 65 AQQLLLRLLPD----SGNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp HHHHHHHHGGG----CCCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhHhh----cCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 44555555432 236789999999999999999888763
No 415
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.03 E-value=0.048 Score=53.08 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHhc
Q 003037 126 VISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
+|+|.|..|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999998773
No 416
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.01 E-value=0.088 Score=54.22 Aligned_cols=26 Identities=35% Similarity=0.336 Sum_probs=22.9
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
....+++|+|+.|+||||+++.++..
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 35679999999999999999998873
No 417
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.00 E-value=0.047 Score=50.94 Aligned_cols=23 Identities=35% Similarity=0.401 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHhc
Q 003037 125 QVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 125 ~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
++++|+|..|+|||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988773
No 418
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.98 E-value=0.12 Score=49.04 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
....|+|+|.+|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4557889999999999999998874
No 419
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=91.96 E-value=1 Score=48.19 Aligned_cols=128 Identities=18% Similarity=0.155 Sum_probs=68.0
Q ss_pred ccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHH
Q 003037 98 EVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIE 177 (854)
Q Consensus 98 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 177 (854)
.++|....+.++.+.+..... .+.. |.|.|..|+|||++|+.+...... .-...+-++++.- . ..++..
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~---~~~~-vli~Ge~GtGK~~lAr~ih~~s~r--~~~~fv~v~~~~~-~-~~~~~~--- 206 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISC---AECP-VLITGESGVGKEVVARLIHKLSDR--SKEPFVALNVASI-P-RDIFEA--- 206 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTT---CCSC-EEEECSTTSSHHHHHHHHHHHSTT--TTSCEEEEETTTS-C-HHHHHH---
T ss_pred hhhhccHHhhHHHHHHHHhcC---CCCC-eEEecCCCcCHHHHHHHHHHhcCC--CCCCeEEEecCCC-C-HHHHHH---
Confidence 467777777777776654332 2333 489999999999999999873211 1112233444432 2 222222
Q ss_pred HhcCCCC----CC-ccHHHHHHHHHHHhcCCeEEEEEecCCCcChhhHHHHHHhhcCC------C-----CCcEEEEecc
Q 003037 178 ALEGSTP----SL-GELNSLLERIYASIARKKFLLVLDDVWTEDYNKWETFQRCLKNG------L-----RGSKILVTTR 241 (854)
Q Consensus 178 ~l~~~~~----~~-~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~------~-----~gs~ilvTtR 241 (854)
.+.+... .. ..... .+ +. ...=.|+||++..-.......+...+..+ + ...|||.||.
T Consensus 207 elfg~~~g~~tga~~~~~g---~~-~~--a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~ 280 (387)
T 1ny5_A 207 ELFGYEKGAFTGAVSSKEG---FF-EL--ADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATN 280 (387)
T ss_dssp HHHCBCTTSSTTCCSCBCC---HH-HH--TTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEES
T ss_pred HhcCCCCCCCCCcccccCC---ce-ee--CCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCC
Confidence 2222110 00 00000 01 11 12236789999766666666777766532 1 2457887775
Q ss_pred c
Q 003037 242 K 242 (854)
Q Consensus 242 ~ 242 (854)
.
T Consensus 281 ~ 281 (387)
T 1ny5_A 281 R 281 (387)
T ss_dssp S
T ss_pred C
Confidence 4
No 420
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.94 E-value=0.11 Score=59.36 Aligned_cols=43 Identities=23% Similarity=0.331 Sum_probs=36.5
Q ss_pred CccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
..++|.+..++.+...+... ..+.|+|++|+||||||+.++..
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 56899999998888877632 36899999999999999999884
No 421
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.94 E-value=0.14 Score=53.05 Aligned_cols=43 Identities=19% Similarity=0.225 Sum_probs=29.7
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCcc
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPF 166 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 166 (854)
...++|+|+|-||+||||+|..++.. ....=..++-|+.....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~--La~~G~~VlliD~D~~~ 81 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDPKH 81 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESSSC
T ss_pred CCceEEEEECCCCccHHHHHHHHHHH--HHHCCCeEEEEeCCCCC
Confidence 46789999999999999999877763 22222256667665443
No 422
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.93 E-value=0.11 Score=52.14 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.-.+++|+|+.|+|||||++.++.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHc
Confidence 446899999999999999999987
No 423
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.90 E-value=0.1 Score=50.72 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
-.+++|+|+.|+|||||++.++.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34789999999999999999987
No 424
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.89 E-value=0.12 Score=51.36 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
-.+++|+|+.|+|||||.+.++.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999987
No 425
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.86 E-value=0.07 Score=53.21 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
..+|+|+|+.|+||||+++.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999987
No 426
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.86 E-value=0.072 Score=50.65 Aligned_cols=22 Identities=41% Similarity=0.451 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHHhc
Q 003037 126 VISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
+++|+|..|+|||||++.++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999888764
No 427
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.79 E-value=0.076 Score=51.89 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhc
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
...|.|.|++|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999999873
No 428
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.77 E-value=0.12 Score=51.71 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.-.+++|+|+.|+|||||.+.++.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999999986
No 429
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.75 E-value=0.12 Score=51.85 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.-.+++|+|+.|+|||||.+.++.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345899999999999999999987
No 430
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.75 E-value=0.12 Score=51.30 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.-.+++|+|+.|+|||||++.++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999976
No 431
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.73 E-value=0.09 Score=50.81 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHh
Q 003037 126 VISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~ 146 (854)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999987
No 432
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.72 E-value=0.12 Score=52.24 Aligned_cols=24 Identities=42% Similarity=0.555 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.-.+++|+|+.|+|||||++.++.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 445899999999999999999976
No 433
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.72 E-value=0.087 Score=52.65 Aligned_cols=24 Identities=33% Similarity=0.303 Sum_probs=21.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.-.+++|+|+.|+|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 456899999999999999998874
No 434
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.68 E-value=0.093 Score=51.56 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 435
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.66 E-value=1.2 Score=48.91 Aligned_cols=52 Identities=13% Similarity=0.089 Sum_probs=35.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHH
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIE 177 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 177 (854)
.-.++.|.|.+|+||||||..++...... .-..++|++... +...+...++.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~~ 253 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRMLC 253 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHHH
Confidence 44589999999999999998888742221 112577777554 45666666653
No 436
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.62 E-value=0.097 Score=54.37 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=21.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHhc
Q 003037 125 QVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 125 ~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.+|+|.|+.|+||||||..++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 68999999999999999999873
No 437
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=91.47 E-value=0.24 Score=53.16 Aligned_cols=100 Identities=10% Similarity=0.135 Sum_probs=56.5
Q ss_pred HHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccc-cC-eeEEEEeCCcc-CHHHHHHHHHHH--hcC-
Q 003037 108 TLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINH-FE-KRIWVCVSDPF-DEFRIAKAIIEA--LEG- 181 (854)
Q Consensus 108 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-f~-~~~wv~~s~~~-~~~~~~~~i~~~--l~~- 181 (854)
+.++.|..-.. -.-++|.|..|+|||+|+.++++.....+. =+ .++++-+.+.. .+.++.+.+.+. +..
T Consensus 140 raID~l~pigr-----GQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rt 214 (465)
T 3vr4_D 140 SAIDHLNTLVR-----GQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRS 214 (465)
T ss_dssp HHHHTTSCCBT-----TCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGE
T ss_pred eEEeccccccc-----CCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccce
Confidence 45566654432 233689999999999999999986433111 11 56677776543 455566655442 110
Q ss_pred ----CCCCCccHHH-----HHHHHHHHhc---CCeEEEEEecC
Q 003037 182 ----STPSLGELNS-----LLERIYASIA---RKKFLLVLDDV 212 (854)
Q Consensus 182 ----~~~~~~~~~~-----~~~~l~~~l~---~k~~LlVlDdv 212 (854)
...+...... ..-.+.++++ ++.+|+++||+
T Consensus 215 vvV~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 215 VMFMNLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 1111111111 1122344443 78999999998
No 438
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.47 E-value=0.11 Score=53.66 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
..++|.|+|+.|+||||||..++..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999873
No 439
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.44 E-value=0.085 Score=51.00 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHhc
Q 003037 125 QVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 125 ~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.+++|+|+.|+|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999988763
No 440
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.44 E-value=0.1 Score=50.76 Aligned_cols=21 Identities=43% Similarity=0.442 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHHh
Q 003037 126 VISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 441
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.43 E-value=0.14 Score=51.75 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.-.+++|+|+.|+|||||++.++.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 345899999999999999999976
No 442
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.38 E-value=0.12 Score=52.09 Aligned_cols=26 Identities=35% Similarity=0.350 Sum_probs=22.8
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.+..++.+.|.||+||||++..++..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 46788999999999999999988753
No 443
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.33 E-value=0.1 Score=51.14 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHHh
Q 003037 126 VISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 444
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.31 E-value=0.12 Score=52.87 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=21.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhc
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.++|.|+|+.|+||||||..++..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 468999999999999999999873
No 445
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.31 E-value=0.1 Score=48.84 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
..+++.|+|..|+|||||+..+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3578999999999999999988874
No 446
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.30 E-value=0.15 Score=47.16 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhc
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
...|+|+|.+|+|||||...+...
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 356899999999999999999864
No 447
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.28 E-value=0.071 Score=52.66 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=16.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHH-h
Q 003037 124 VQVISLVGMGGIGKTTLAQFAY-N 146 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~-~ 146 (854)
..+++|+|+.|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 4589999999999999999998 5
No 448
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.27 E-value=0.39 Score=61.39 Aligned_cols=84 Identities=17% Similarity=0.097 Sum_probs=56.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCC-----CCccHHHHHHHHH
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTP-----SLGELNSLLERIY 197 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 197 (854)
.-+++.|+|.+|+||||||.+++... ...-..++|++.....+... ++.++.+.. +..+.+++...+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~--a~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 45689999999999999998887742 22224688988887766542 555654321 2345666666666
Q ss_pred HHh-cCCeEEEEEecCC
Q 003037 198 ASI-ARKKFLLVLDDVW 213 (854)
Q Consensus 198 ~~l-~~k~~LlVlDdv~ 213 (854)
+.. ..+.-+||+|-+.
T Consensus 455 ~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCcEEEECCHH
Confidence 544 3456799999873
No 449
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.24 E-value=0.11 Score=53.52 Aligned_cols=24 Identities=33% Similarity=0.301 Sum_probs=21.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhc
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.++|.|+|+.|+||||||+.++..
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 450
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.18 E-value=0.11 Score=50.02 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHhc
Q 003037 126 VISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
+|.|.|++|+||||.|+.++..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4779999999999999999873
No 451
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=91.17 E-value=0.4 Score=51.58 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=22.8
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHh
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
...++..|.|.+|.||||+.++.++
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Confidence 4788999999999999999998876
No 452
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.16 E-value=0.15 Score=51.76 Aligned_cols=24 Identities=33% Similarity=0.374 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.-.+++|+|+.|+|||||++.++.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 345799999999999999999987
No 453
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.13 E-value=0.12 Score=54.40 Aligned_cols=26 Identities=35% Similarity=0.336 Sum_probs=23.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
....+++|+|..|+||||+++.++..
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhh
Confidence 35689999999999999999998873
No 454
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.09 E-value=0.11 Score=51.37 Aligned_cols=24 Identities=33% Similarity=0.214 Sum_probs=21.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhc
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
...|.|.|+.|+||||+|+.+...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999873
No 455
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.09 E-value=0.12 Score=53.50 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHh
Q 003037 125 QVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 125 ~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 456
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=91.09 E-value=3.2 Score=55.69 Aligned_cols=233 Identities=12% Similarity=0.145 Sum_probs=0.0
Q ss_pred EEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhc-------CCCCCCccHHHHHHHHHHH
Q 003037 127 ISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALE-------GSTPSLGELNSLLERIYAS 199 (854)
Q Consensus 127 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~-------~~~~~~~~~~~~~~~l~~~ 199 (854)
|.++|++|+|||++++.+.. ...+ ...+.++++...+...++..+-..+. +.......
T Consensus 1307 vLL~GptGtGKT~li~~~L~--~l~~--~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~----------- 1371 (3245)
T 3vkg_A 1307 LILCGPPGSGKTMTLTSTLR--AFPD--FEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQ----------- 1371 (3245)
T ss_dssp CEEESSTTSSHHHHHHHHGG--GCTT--EEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESS-----------
T ss_pred EEEECCCCCCHHHHHHHHHH--hCCC--CceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCCc-----------
Q ss_pred hcCCeEEEEEecCCCcChh------hHHHHHHhhcCCC------------CCcEEEEec-------ccHHHHhhccCcce
Q 003037 200 IARKKFLLVLDDVWTEDYN------KWETFQRCLKNGL------------RGSKILVTT-------RKMTVAQMMQSNDV 254 (854)
Q Consensus 200 l~~k~~LlVlDdv~~~~~~------~~~~l~~~l~~~~------------~gs~ilvTt-------R~~~v~~~~~~~~~ 254 (854)
.+|+.++++||+--...+ ..+.+++.+..++ .+..+|.|. |+.--.........
T Consensus 1372 -~Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~v 1450 (3245)
T 3vkg_A 1372 -LGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPI 1450 (3245)
T ss_dssp -TTCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCCE
T ss_pred -CCceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhceE
Q ss_pred EecCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCcHHHHHHHhhhccCCCHHHHHHHHhhhcCCccccc
Q 003037 255 ILIRELSEQACWSLFEQLAFFGRPRSECEQLIEIGRKIVGKCKGLPLAAKTIGSLLRFKRSSREWQSILDSEIGQLEEFE 334 (854)
Q Consensus 255 ~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~ 334 (854)
+.+...+.++-..+| ..+...+.+....+.-....+...+ .+-|..+...
T Consensus 1451 i~i~~ps~esL~~If----------------~til~~~l~~~p~l~~~~~~lv~at-----i~ly~~v~~~--------- 1500 (3245)
T 3vkg_A 1451 LLVDFPSTSSLTQIY----------------GTFNRALMKLLPNLRSFADNLTDAM-----VEFYSESQKR--------- 1500 (3245)
T ss_dssp EECCCCCHHHHHHHH----------------HHHHHHHTTSCGGGTTSHHHHHHHH-----HHHHHHHHHH---------
T ss_pred EEeCCCCHHHHHHHH----------------HHHHHHHHhhChHHHHHHHHHHHHH-----HHHHHHHHHh---------
Q ss_pred cCccchhhcccC-CChHHHHHHHhhhhcCCCCceechHHHHHHHHHhC---cccCCCCchHHHHHHHHHHHHHhccc
Q 003037 335 RGLLPPLLLSYN-DMPSVIKWSFSYCAIFPKDYNIEKDELIKLWLAQG---YIRPKENKELEMIVEEYFDYLAARSF 407 (854)
Q Consensus 335 ~~v~~~l~~sy~-~L~~~~k~cf~~~s~fp~~~~i~~~~li~~Wia~g---~i~~~~~~~~e~~~~~~l~~L~~~sl 407 (854)
..+.-+.-|- +|-.-.|-|--.+-..+.....+.+.++++|+-|+ |-+.--+....+...+.+.+.+...|
T Consensus 1501 --~lp~~k~HY~FnLRDLsrv~qGll~~~~~~~~~~~~~lvrLW~HE~~RVF~DRLv~~~Dr~~f~~~l~~~~~~~F 1575 (3245)
T 3vkg_A 1501 --FTPDIQAHYIYSPRELSRWDRALLEAIQTMDGCTLEGLVRLWAHEALRLFQDRLVETEEKEWTDKKIDEVALKHF 1575 (3245)
T ss_dssp --SCTTTSTTCCCCHHHHHHHHHHHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHHHHHHC
T ss_pred --cCCCcCCCccccHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
No 457
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.87 E-value=0.15 Score=52.01 Aligned_cols=25 Identities=32% Similarity=0.211 Sum_probs=22.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
..++|.|+|+.|+||||||..++..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 4678999999999999999999873
No 458
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=90.83 E-value=0.27 Score=47.24 Aligned_cols=110 Identities=13% Similarity=0.042 Sum_probs=51.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCC--CCccHHHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTP--SLGELNSLLERIYASI 200 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l 200 (854)
.-.+..++|..|.||||.|.....+...++ . .++.+..... .+.-...++..++.... ...+.+ .+.+.+
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g-~-kVli~k~~~d--~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~ 98 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAK-Q-HAIVFKPCID--NRYSEEDVVSHNGLKVKAVPVSASK----DIFKHI 98 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTT-C-CEEEEECC-------------------CCEEECSSGG----GGGGGC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCC-C-EEEEEEeccC--CcchHHHHHhhcCCeeEEeecCCHH----HHHHHH
Confidence 356888999999999999977666432222 2 2333332211 11111223333332211 111111 122222
Q ss_pred cCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccH
Q 003037 201 ARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKM 243 (854)
Q Consensus 201 ~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 243 (854)
.++--+|++|.+.--+.+..+.+....+ .|-.||+|-++.
T Consensus 99 ~~~~dvViIDEaQF~~~~~V~~l~~l~~---~~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFFDGDIVEVVQVLAN---RGYRVIVAGLDQ 138 (214)
T ss_dssp CSSCCEEEECCGGGSCTTHHHHHHHHHH---TTCEEEEEECSB
T ss_pred hcCCCEEEEECcccCCHHHHHHHHHHhh---CCCEEEEEeccc
Confidence 3333499999985543345544443333 367899999854
No 459
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.82 E-value=0.18 Score=50.28 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
-.+++|+|+.|+|||||.+.++.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35799999999999999999987
No 460
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.77 E-value=0.07 Score=54.69 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=18.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
+..+|+|.|..|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999876
No 461
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.73 E-value=0.14 Score=48.83 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhc
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.-.|+|+|..|+|||||++.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999874
No 462
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.73 E-value=0.31 Score=61.40 Aligned_cols=81 Identities=17% Similarity=0.138 Sum_probs=0.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCC-----CCCCccHHHHHHHHHHH
Q 003037 125 QVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGS-----TPSLGELNSLLERIYAS 199 (854)
Q Consensus 125 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~~l~~~ 199 (854)
+++.|.|.+|+||||||.+++. .....-..++|++.....+... ++.++.+ .....+.+++...+...
T Consensus 384 ~lilI~G~pGsGKTtLaLq~a~--~~~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~~l 456 (1706)
T 3cmw_A 384 RIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 456 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH--HHHHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHHHH
Q ss_pred h-cCCeEEEEEecC
Q 003037 200 I-ARKKFLLVLDDV 212 (854)
Q Consensus 200 l-~~k~~LlVlDdv 212 (854)
. ..+.-++|+|-+
T Consensus 457 v~~~~~~lVVIDSL 470 (1706)
T 3cmw_A 457 ARSGAVDVIVVDSV 470 (1706)
T ss_dssp HHHTCCSEEEESCS
T ss_pred HHhcCCCEEEECCH
No 463
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=90.71 E-value=0.26 Score=52.98 Aligned_cols=100 Identities=9% Similarity=0.064 Sum_probs=56.2
Q ss_pred HHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccc--------cccC-eeEEEEeCCcc-CHHHHHHHHHH
Q 003037 108 TLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVI--------NHFE-KRIWVCVSDPF-DEFRIAKAIIE 177 (854)
Q Consensus 108 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--------~~f~-~~~wv~~s~~~-~~~~~~~~i~~ 177 (854)
+.++.|..-. +-.-++|.|..|+|||+|+.++++..... ++=+ .++++-+.+.. .+.++.+.+.+
T Consensus 136 raID~l~pig-----rGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~ 210 (464)
T 3gqb_B 136 STIDVMNTLV-----RGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFER 210 (464)
T ss_dssp HHHHTTSCCB-----TTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred eeeecccccc-----cCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhh
Confidence 4556665443 23346799999999999999998864431 1111 56677777543 44555555443
Q ss_pred H--hcC-----CCCCCccHHHH-----HHHHHHHhc---CCeEEEEEecC
Q 003037 178 A--LEG-----STPSLGELNSL-----LERIYASIA---RKKFLLVLDDV 212 (854)
Q Consensus 178 ~--l~~-----~~~~~~~~~~~-----~~~l~~~l~---~k~~LlVlDdv 212 (854)
. +.. ...+....... .-.+.++++ ++.+|+++||+
T Consensus 211 ~g~~~rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 211 TGALSRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp TSGGGGEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred cccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 2 110 01111112211 122344443 78999999998
No 464
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.64 E-value=0.13 Score=51.40 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=21.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
-.+++|+|+.|+|||||++.++.
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999987
No 465
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=90.64 E-value=0.84 Score=51.84 Aligned_cols=24 Identities=38% Similarity=0.571 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.-.+++|+|+.|+|||||++.+..
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 445899999999999999999976
No 466
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.56 E-value=0.15 Score=48.21 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=21.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhc
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.+.|.|.|+.|+||||||.++...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 356889999999999999999874
No 467
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.48 E-value=0.14 Score=51.81 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.-.+++|+|+.|+|||||++.++.
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345899999999999999999987
No 468
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.48 E-value=0.22 Score=54.89 Aligned_cols=47 Identities=13% Similarity=-0.041 Sum_probs=33.1
Q ss_pred CccccchhHHHHHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 97 SEVRGRDEEKNTLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 97 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
+..+.|.+..+.+.+...... ....+|.+.|+.|+||||+|+.+...
T Consensus 372 P~~f~rpeV~~vLr~~~~~~~----~~~~~I~l~GlsGsGKSTIa~~La~~ 418 (511)
T 1g8f_A 372 PEWFSYPEVVKILRESNPPRP----KQGFSIVLGNSLTVSREQLSIALLST 418 (511)
T ss_dssp CTTTSCHHHHHHHHHHSCCGG----GCCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred CccccChhhHHHHHHhccccc----ccceEEEecccCCCCHHHHHHHHHHH
Confidence 445556566556655442211 24578999999999999999999884
No 469
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.47 E-value=0.16 Score=51.08 Aligned_cols=108 Identities=17% Similarity=0.162 Sum_probs=55.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCC-ccCHHHHHHHHHH--HhcCCCCCCccHHHHHHHHHHH
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSD-PFDEFRIAKAIIE--ALEGSTPSLGELNSLLERIYAS 199 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~--~l~~~~~~~~~~~~~~~~l~~~ 199 (854)
.-.+++|+|+.|+|||||++.+..- ....+.+.+++.-.. .+-.... ..+.. .++. ... .+...+.+.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl---~~~---~l~~~la~a 94 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYVFKHK-KSIVNQREVGE---DTK---SFADALRAA 94 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEESSCCSCCCCS-SSEEEEEEBTT---TBS---CHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcCCcceeecCCc-ceeeeHHHhCC---CHH---HHHHHHHHH
Confidence 4568999999999999999988763 211123333332110 0000000 00000 0000 111 234556666
Q ss_pred hcCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccHH
Q 003037 200 IARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKMT 244 (854)
Q Consensus 200 l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 244 (854)
+...+=++++|..- +......+.... ..|.-|++||-...
T Consensus 95 L~~~p~illlDEp~--D~~~~~~~l~~~---~~g~~vl~t~H~~~ 134 (261)
T 2eyu_A 95 LREDPDVIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNT 134 (261)
T ss_dssp HHHCCSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEECCSS
T ss_pred HhhCCCEEEeCCCC--CHHHHHHHHHHH---ccCCEEEEEeCcch
Confidence 66677789999985 333333333332 23556778776544
No 470
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=90.43 E-value=0.43 Score=45.56 Aligned_cols=49 Identities=20% Similarity=0.190 Sum_probs=29.6
Q ss_pred EEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHH
Q 003037 126 VISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAII 176 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 176 (854)
.|+|=|.-|+||||.++.+++. ....-..+++..-.......+....++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~--L~~~g~~v~~treP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY--LEKRGKKVILKREPGGTETGEKIRKIL 50 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCCCCcHHHHHHHHh
Confidence 3678899999999999999884 333333344444333333333444443
No 471
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.42 E-value=0.28 Score=47.49 Aligned_cols=104 Identities=17% Similarity=0.194 Sum_probs=55.4
Q ss_pred EEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCC----------CCccHHHHHHH
Q 003037 126 VISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTP----------SLGELNSLLER 195 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----------~~~~~~~~~~~ 195 (854)
.|.+.|.||+||||+|..++..... ..+ .+..+.+....+... ...+..+..... ...+++..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~-~G~-~V~v~d~D~q~~~~~--~al~~gl~~~~~~~~~~~~~~~~e~~l~~~--- 80 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLR-QGV-RVMAGVVETHGRAET--EALLNGLPQQPLLRTEYRGMTLEEMDLDAL--- 80 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH-TTC-CEEEEECCCTTCHHH--HHHHTTSCBCCCEEEEETTEEEEECCHHHH---
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH-CCC-CEEEEEeCCCCChhH--HHHhcCccccCcceeecCCcccccccHHHH---
Confidence 4778999999999999777764221 223 345555554333321 122222221110 11222221
Q ss_pred HHHHhcCCeEEEEEecCCCc------ChhhHHHHHHhhcCCCCCcEEEEecccH
Q 003037 196 IYASIARKKFLLVLDDVWTE------DYNKWETFQRCLKNGLRGSKILVTTRKM 243 (854)
Q Consensus 196 l~~~l~~k~~LlVlDdv~~~------~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 243 (854)
+..+.=++|+|++-.. ...-|..+...++. |..++.|+.-.
T Consensus 81 ----L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~s---gidVitT~Nlq 127 (228)
T 2r8r_A 81 ----LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAA---GIDVYTTVNVQ 127 (228)
T ss_dssp ----HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHT---TCEEEEEEEGG
T ss_pred ----HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcC---CCCEEEEcccc
Confidence 2235669999986421 12367777665543 55678777633
No 472
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.40 E-value=0.32 Score=52.53 Aligned_cols=100 Identities=7% Similarity=-0.008 Sum_probs=57.1
Q ss_pred HHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccc--cCeeEEEEeCCcc-CHHHHHHHHHHHhcC---
Q 003037 108 TLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINH--FEKRIWVCVSDPF-DEFRIAKAIIEALEG--- 181 (854)
Q Consensus 108 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~~s~~~-~~~~~~~~i~~~l~~--- 181 (854)
+.++.|..-. +-.-++|.|.+|+|||+|+..++++....+. =+.++++-+++.. .+.++.+.+...=..
T Consensus 141 r~ID~l~pig-----rGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rt 215 (469)
T 2c61_A 141 STIDGTNTLV-----RGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERA 215 (469)
T ss_dssp HHHHTTSCCB-----TTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGE
T ss_pred Eeeeeeeccc-----cCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccce
Confidence 4566666543 2334678899999999999999986443221 1356677776543 455566666543110
Q ss_pred ----CCCCCccHHH-----HHHHHHHHh---cCCeEEEEEecC
Q 003037 182 ----STPSLGELNS-----LLERIYASI---ARKKFLLVLDDV 212 (854)
Q Consensus 182 ----~~~~~~~~~~-----~~~~l~~~l---~~k~~LlVlDdv 212 (854)
...+...... ..-.+.+++ +++.+|+++||+
T Consensus 216 vvV~~tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 216 VVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 0111111111 112233444 378999999997
No 473
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=90.31 E-value=0.1 Score=59.36 Aligned_cols=52 Identities=21% Similarity=0.231 Sum_probs=34.7
Q ss_pred CCccccchhHHHHHHHHhcccccc-----cCCCeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 96 VSEVRGRDEEKNTLKSKLLCESSE-----QQNAVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 96 ~~~~vGr~~~~~~l~~~L~~~~~~-----~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.+.++|.++.+..+.-.|...... ......-|.++|++|+|||+||+.+++.
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTT
T ss_pred cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHh
Confidence 367899998777765555432100 0000114789999999999999999874
No 474
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=90.30 E-value=0.48 Score=51.92 Aligned_cols=59 Identities=10% Similarity=0.104 Sum_probs=40.9
Q ss_pred HHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccC-HHHHHHHH
Q 003037 108 TLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFD-EFRIAKAI 175 (854)
Q Consensus 108 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i 175 (854)
++++.|..-. +-..++|.|..|+|||+|++++.+. .+-+.++++-+++... +.++++.+
T Consensus 216 rvID~l~Pig-----kGqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQA-----KGGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEE-----TTCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCcc-----cCCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 5667776543 3445789999999999999998874 2235678888887654 34444443
No 475
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.28 E-value=0.22 Score=52.30 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.-.+++|+|+.|+|||||.+.++.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCchHHHHHHHHhc
Confidence 345899999999999999999987
No 476
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.27 E-value=0.13 Score=48.61 Aligned_cols=22 Identities=41% Similarity=0.480 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHHhc
Q 003037 126 VISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999998873
No 477
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=90.27 E-value=0.092 Score=49.92 Aligned_cols=110 Identities=11% Similarity=0.042 Sum_probs=53.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCC--CCCccHHHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGST--PSLGELNSLLERIYASI 200 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~~l~~~l 200 (854)
.-++..++|..|.||||.+..+.++...++ +. ++.+..... .+.-...+...++... ....+.+ .+.+.+
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g-~k-V~v~k~~~d--~r~~~~~i~s~~g~~~~a~~~~~~~----~i~~~~ 78 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAK-QK-IQVFKPEID--NRYSKEDVVSHMGEKEQAVAIKNSR----EILKYF 78 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTT-CC-EEEEEEC---------CEEECTTSCEEECEEESSST----HHHHHC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCC-CE-EEEEEeccC--ccchHHHHHhhcCCceeeEeeCCHH----HHHHHH
Confidence 347899999999999999977776432222 22 222221111 0000111222222110 0011111 233333
Q ss_pred cCCeEEEEEecCCCcChhhHHHHHHhhcCCCCCcEEEEecccH
Q 003037 201 ARKKFLLVLDDVWTEDYNKWETFQRCLKNGLRGSKILVTTRKM 243 (854)
Q Consensus 201 ~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 243 (854)
.+.-=+|++|.+..-+.+..+.+....+ .|..||+|.++.
T Consensus 79 ~~~~dvViIDEaqfl~~~~v~~l~~l~~---~~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 79 EEDTEVIAIDEVQFFDDEIVEIVNKIAE---SGRRVICAGLDM 118 (191)
T ss_dssp CTTCSEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEEECSB
T ss_pred hccCCEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEEeccc
Confidence 3333499999975433344554444333 267899998853
No 478
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=90.21 E-value=2 Score=48.63 Aligned_cols=24 Identities=42% Similarity=0.578 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.-.+++|+|+.|+|||||.+.+..
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHhc
Confidence 345899999999999999999876
No 479
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=90.21 E-value=0.8 Score=50.43 Aligned_cols=58 Identities=10% Similarity=0.092 Sum_probs=40.0
Q ss_pred HHHHHhcccccccCCCeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCcc-CHHHHHHH
Q 003037 108 TLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPF-DEFRIAKA 174 (854)
Q Consensus 108 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~ 174 (854)
++++.|..-. +-..++|.|..|+|||+|++++.+.. +-+.++++-+.+.. .+.++++.
T Consensus 221 rvID~l~Pig-----rGqr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 221 RVIDTFFPVT-----KGGAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp HHHHHHSCCB-----TTCEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECHHHHHHHHHH
T ss_pred hhhhccCCcc-----CCCEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHH
Confidence 5667776543 34467899999999999999998842 23567788887653 33344433
No 480
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.21 E-value=0.14 Score=51.50 Aligned_cols=24 Identities=38% Similarity=0.606 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.-.+++|+|+.|+|||||++.++.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999999986
No 481
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=90.20 E-value=1.3 Score=50.09 Aligned_cols=124 Identities=11% Similarity=0.104 Sum_probs=62.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHhcccc-ccc-c-C-eeEEEEeC--C--ccCHH--------------HHHHHHHHHhcCC
Q 003037 125 QVISLVGMGGIGKTTLAQFAYNNNDV-INH-F-E-KRIWVCVS--D--PFDEF--------------RIAKAIIEALEGS 182 (854)
Q Consensus 125 ~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~-f-~-~~~wv~~s--~--~~~~~--------------~~~~~i~~~l~~~ 182 (854)
.+++|+|+.|+|||||++.++.-... .+. . . .+.++.-. . ..++. ....++++.++..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~ 458 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID 458 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence 47999999999999999999873211 111 0 0 12222110 0 01111 2223344444322
Q ss_pred C-----CCCccHHHH-HHHHHHHhcCCeEEEEEecCCC-cChhhHHHHHHhhcCC--CCCcEEEEecccHHHHhh
Q 003037 183 T-----PSLGELNSL-LERIYASIARKKFLLVLDDVWT-EDYNKWETFQRCLKNG--LRGSKILVTTRKMTVAQM 248 (854)
Q Consensus 183 ~-----~~~~~~~~~-~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~~ 248 (854)
. ...-+..+. .-.+.+.|..++=+|+||.--. -|...-..+...+... ..|..||++|-+...+..
T Consensus 459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~ 533 (608)
T 3j16_B 459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATY 533 (608)
T ss_dssp TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHH
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 1 112222222 2345567788889999998532 2333333333333221 135567777776655544
No 482
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=90.13 E-value=0.39 Score=52.26 Aligned_cols=96 Identities=17% Similarity=0.074 Sum_probs=54.7
Q ss_pred HHHHHhcccccccCCCeEEEEEEecCCCcHHHHH-HHHHhccccccccC-eeEEEEeCCcc-CHHHHHHHHHHHhcC---
Q 003037 108 TLKSKLLCESSEQQNAVQVISLVGMGGIGKTTLA-QFAYNNNDVINHFE-KRIWVCVSDPF-DEFRIAKAIIEALEG--- 181 (854)
Q Consensus 108 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~--- 181 (854)
+.++.|..-. +-.-++|+|..|+|||+|| ..+.+.. .-+ .++++-+++.. ++.++.+.+.+.=..
T Consensus 164 raID~l~Pig-----rGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rt 234 (515)
T 2r9v_A 164 KAIDSMIPIG-----RGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYT 234 (515)
T ss_dssp HHHHHHSCEE-----TTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGE
T ss_pred cccccccccc-----cCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCccee
Confidence 5566666443 3345789999999999996 5777742 244 34677777654 344555555432100
Q ss_pred ----CCCCCccHHHH-----HHHHHHHh--cCCeEEEEEecC
Q 003037 182 ----STPSLGELNSL-----LERIYASI--ARKKFLLVLDDV 212 (854)
Q Consensus 182 ----~~~~~~~~~~~-----~~~l~~~l--~~k~~LlVlDdv 212 (854)
...+....... .-.+.+++ +++.+|+++||+
T Consensus 235 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 235 TVVVASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 11111111111 11223333 478999999998
No 483
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.08 E-value=0.19 Score=49.51 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=22.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
...+|+|.|+.|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999884
No 484
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=90.05 E-value=1.5 Score=51.57 Aligned_cols=89 Identities=16% Similarity=0.150 Sum_probs=45.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHHHHHhcCCCCC-------------------
Q 003037 125 QVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAIIEALEGSTPS------------------- 185 (854)
Q Consensus 125 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~------------------- 185 (854)
.++.|+|..|.||||++..+.........-...+.+......-..++...+...++.....
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~ 189 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILK 189 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccccccCCCCCEE
Confidence 4688999999999996655543211111112334444443333334444555544321100
Q ss_pred CccHHHHHHHHHH-HhcCCeEEEEEecCC
Q 003037 186 LGELNSLLERIYA-SIARKKFLLVLDDVW 213 (854)
Q Consensus 186 ~~~~~~~~~~l~~-~l~~k~~LlVlDdv~ 213 (854)
..+...+...+.. .+-.+--+||+|.+.
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah 218 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAH 218 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGG
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCcc
Confidence 0123344433332 223456799999995
No 485
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=89.99 E-value=0.72 Score=52.59 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.-.+++|+|+.|+|||||++.+..
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 445899999999999999999976
No 486
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.95 E-value=0.16 Score=52.13 Aligned_cols=24 Identities=17% Similarity=0.312 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.-.+++|+|+.|+|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 456899999999999999999887
No 487
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.94 E-value=0.19 Score=45.85 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHhc
Q 003037 125 QVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 125 ~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
+-|.|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999998874
No 488
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.92 E-value=0.15 Score=50.24 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=22.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHh
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
....+|+|.|..|+||||+++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 4567999999999999999999887
No 489
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=89.92 E-value=0.22 Score=55.87 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.-.+++|+|..|+|||||++.++..
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998864
No 490
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.88 E-value=0.16 Score=50.24 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=22.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHh
Q 003037 122 NAVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 122 ~~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
....+|+|.|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3566899999999999999999886
No 491
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.88 E-value=0.19 Score=49.90 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=21.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhc
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
...|+|.|..|+||||+++.++..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999874
No 492
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=89.86 E-value=0.16 Score=48.72 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhc
Q 003037 124 VQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 124 ~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999999874
No 493
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=89.85 E-value=0.32 Score=49.12 Aligned_cols=39 Identities=23% Similarity=0.270 Sum_probs=26.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCc
Q 003037 125 QVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDP 165 (854)
Q Consensus 125 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 165 (854)
++|+|.|.||+||||+|..++.. ....-..++-|+....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~--la~~G~~VlliD~D~q 40 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSG--LHAMGKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH--HHTTTCCEEEEEECTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHH--HHHCCCcEEEEcCCCC
Confidence 57888999999999999887763 2222224666666543
No 494
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.84 E-value=0.21 Score=47.15 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhc
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
....|+|+|.+|+|||||+..+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999874
No 495
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.81 E-value=0.17 Score=51.59 Aligned_cols=24 Identities=42% Similarity=0.364 Sum_probs=20.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.-.++.|+|.+|+||||||..++.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 345899999999999999988875
No 496
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=89.79 E-value=0.96 Score=48.93 Aligned_cols=50 Identities=18% Similarity=0.038 Sum_probs=30.6
Q ss_pred HhcCCe--EEEEEecCCCc-ChhhHHHHHHhhcCCCCCcEEEEecccHHHHhh
Q 003037 199 SIARKK--FLLVLDDVWTE-DYNKWETFQRCLKNGLRGSKILVTTRKMTVAQM 248 (854)
Q Consensus 199 ~l~~k~--~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~ 248 (854)
.+...+ -+||||+.-.. +......+...+.....|..||++|-+..++..
T Consensus 309 ~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~ 361 (415)
T 4aby_A 309 STVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAAR 361 (415)
T ss_dssp HHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTT
T ss_pred HHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhh
Confidence 444445 79999998542 334444555555433346778888877777654
No 497
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.75 E-value=0.28 Score=48.82 Aligned_cols=50 Identities=20% Similarity=0.226 Sum_probs=31.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhccccccccCeeEEEEeCCccCHHHHHHHH
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYNNNDVINHFEKRIWVCVSDPFDEFRIAKAI 175 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 175 (854)
.-.++.|.|.+|+|||++|.+++.+. ..+.-..+++++... +...+...+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESSS--CHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeecccC--CHHHHHHHH
Confidence 44688999999999999998765431 122223566666554 455555443
No 498
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.68 E-value=0.18 Score=46.13 Aligned_cols=22 Identities=36% Similarity=0.638 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHhc
Q 003037 126 VISLVGMGGIGKTTLAQFAYNN 147 (854)
Q Consensus 126 vv~I~G~gGiGKTtLa~~v~~~ 147 (854)
-|.|+|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999764
No 499
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.68 E-value=0.16 Score=53.84 Aligned_cols=24 Identities=29% Similarity=0.156 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
...+++|+|+.|+|||||++.++.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999999987
No 500
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.66 E-value=1.6 Score=49.47 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 003037 123 AVQVISLVGMGGIGKTTLAQFAYN 146 (854)
Q Consensus 123 ~~~vv~I~G~gGiGKTtLa~~v~~ 146 (854)
.-.+++|+|+.|+|||||++.+..
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 446899999999999999998876
Done!