BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003038
(854 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P42730|CLPB1_ARATH Chaperone protein ClpB1 OS=Arabidopsis thaliana GN=CLPB1 PE=1 SV=2
Length = 911
Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 141/288 (48%), Gaps = 29/288 (10%)
Query: 20 VKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALELCFNVALNR 79
+ A LA GHAQ TPLH+A +++ TG+ A + S ++ E N AL +
Sbjct: 14 IATAHELAVNAGHAQFTPLHLAGALISDPTGIFPQA-ISSAGGENAAQSAERVINQALKK 72
Query: 80 LPASTSTPMLGGHCQFPTISNALVAAFKRAQAHQR-RGSIENQQQPLLAVKIELEQLIIS 138
LP+ + P P S++L+ +RAQA Q+ RG LAV +QLI+
Sbjct: 73 LPSQSPPP-----DDIPA-SSSLIKVIRRAQAAQKSRGDTH------LAV----DQLIMG 116
Query: 139 ILDDPSVSRVMREAGFSSTQVKSNVEQAVSLEICSQSTPVSSNKSKESNVLVLSQTASAT 198
+L+D + ++ E G ++ +VKS VE+ + + + S ++N L +T
Sbjct: 117 LLEDSQIRDLLNEVGVATARVKSEVEK-----LRGKEGKKVESASGDTNFQAL-KTYGRD 170
Query: 199 KVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDV 256
V + LDP+ R+E++ V+ L + K N V++GE VV G+ +I KGDV
Sbjct: 171 LVEQAG-KLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVKGDV 229
Query: 257 PEALRDVKCLPLSISSF--RHMNRVEVEQRVEEIKNLVRSCLGRGIVL 302
P +L DV+ + L + + R E E+R++ + V G+ I+
Sbjct: 230 PNSLTDVRLISLDMGALVAGAKYRGEFEERLKSVLKEVEDAEGKVILF 277
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 74/185 (40%), Gaps = 18/185 (9%)
Query: 598 VHKFKELNSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTMRRK---GKFKDHSEV 654
V + + E L L + L K+V Q V ++ +L+ R+G R + G F
Sbjct: 549 VTRLGQNEKERLIGLADRLHKRVVGQNQAVNAVSEAILRSRAGLGRPQQPTGSF------ 602
Query: 655 KEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRD 714
F G K ++AK LA +F N V I +S + + S
Sbjct: 603 ------LFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVG 656
Query: 715 EQSCSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDA 774
+ + EAV P+ V L ++VE+A + ++ GR+ G V ++
Sbjct: 657 HEEGG---QLTEAVRRRPYCVILFDEVEKAHVAVFNTLLQVLDDGRLTDGQGRTVDFRNS 713
Query: 775 IVILS 779
++I++
Sbjct: 714 VIIMT 718
>sp|Q6F2Y7|CLPB1_ORYSJ Chaperone protein ClpB1 OS=Oryza sativa subsp. japonica GN=CLPB1
PE=2 SV=1
Length = 912
Score = 80.9 bits (198), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 139/291 (47%), Gaps = 39/291 (13%)
Query: 23 AMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQC-KALELCFNVALNRLP 81
A +A GHAQ+TPLH+ + A G+LR A Q+ + E + AL +LP
Sbjct: 17 AHEIASEAGHAQLTPLHLVAALAADKGGILRQAISQASGGDAGAPDSFERVVSGALKKLP 76
Query: 82 ASTSTPMLGGHCQFPTISNALVAAFKRAQ-AHQRRGSIENQQQPLLAVKIELEQLIISIL 140
+ + P P S AL+ +RAQ A ++RG LAV +QL++ +L
Sbjct: 77 SQSPPP-----DSVPA-STALIKVIRRAQSAQKKRGDSH------LAV----DQLLLGLL 120
Query: 141 DDPSVSRVMREAGFSSTQVKSNVE-----QAVSLEICSQSTPVSSNKSKESNVLVLSQTA 195
+D +S ++EAG S+ +V++ +E + +E S T + K+ +++
Sbjct: 121 EDSLISDCLKEAGVSAARVRAELEKLRGGEGRKVESASGDTNFQALKTYGRDLV-----E 175
Query: 196 SATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEK 253
A K LDP+ R+E++ V+ L + K N V++GE VV G+ +I +
Sbjct: 176 QAGK-------LDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVR 228
Query: 254 GDVPEALRDVKCLPLSISSF--RHMNRVEVEQRVEEIKNLVRSCLGRGIVL 302
GDVP L DV+ + L + + R E E+R++ + V G+ I+
Sbjct: 229 GDVPSNLLDVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILF 279
Score = 39.7 bits (91), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 73/189 (38%), Gaps = 26/189 (13%)
Query: 598 VHKFKELNSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTMRRK---GKFKDHSEV 654
V + + + E L L + L ++V Q + V +A VL+ R+G R + G F
Sbjct: 550 VTRLGQNDKERLVGLADRLHQRVVGQAEAVSAVAEAVLRSRAGLGRPQQPTGSF------ 603
Query: 655 KEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSF----SSTRADSTEDSRNK 710
F G K ++AK LA +F N V I +S + S R
Sbjct: 604 ------LFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVARLIGAPPGYVG 657
Query: 711 RSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVS 770
Q E V P+ V L ++VE+A + ++ GR+ G V
Sbjct: 658 HEEGGQ-------LTEQVRRRPYSVILFDEVEKAHVAVFNTLLQVLDDGRLTDGQGRTVD 710
Query: 771 LGDAIVILS 779
+ ++I++
Sbjct: 711 FRNTVIIMT 719
>sp|Q8G4X4|CLPB_BIFLO Chaperone protein ClpB OS=Bifidobacterium longum (strain NCC 2705)
GN=clpB PE=3 SV=1
Length = 889
Score = 66.6 bits (161), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 87/368 (23%), Positives = 150/368 (40%), Gaps = 43/368 (11%)
Query: 8 IQQGLTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCK 67
++Q T A V A+ A G+AQV LHV + +L G+ R+ + P +
Sbjct: 1 MEQKFTTMAQEAVGDAIQSASAAGNAQVETLHVMDALLRQENGVARSLIEAAGGDP---Q 57
Query: 68 ALELCFNVALNRLPASTSTPMLGGHCQFPTISNALVAAFKRAQAHQRRGSIENQQQPLLA 127
A+ AL LP+++ G P S L AA +A E + Q +
Sbjct: 58 AIGAAVRNALVALPSAS-----GSSTSQPQASRQLTAAIAQA---------EKEMQQMGD 103
Query: 128 VKIELEQLIISIL-DDPSVS-RVMREAGFSSTQVKSNVEQAVSLEICSQSTPVSSNKSKE 185
+ E L+I I P+ S ++ + G ++ ++ V + S K+ E
Sbjct: 104 EYVSTEHLLIGIAASKPNQSAEILEKNGVTAASLRKAVPGVRGGAKVTSPDAEGSYKALE 163
Query: 186 SNVLVLSQTASATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGV 243
L+ A K LDP+ R++++ VI+ L + K N V++GE V
Sbjct: 164 KYSTDLTAAAKEGK-------LDPVIGRDQEIRRVIQILSRRTKNNPVLIGEPGVGKTAV 216
Query: 244 VRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMN--RVEVEQRVEEIKNLVRSCLGRGIV 301
V G+ +I GDVP L+ K + L + S + R E E+R++ + N +++ G+ +
Sbjct: 217 VEGLAQRIVAGDVPTTLQGKKLISLDLGSMVAGSKYRGEFEERLKSVLNEIKNADGQ--I 274
Query: 302 LNLGDLEWAEFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRC 361
+ D A ++E M+ G ++ + L+G T Y
Sbjct: 275 ITFIDEIHTIVGAGAAEGS-----------MDAGNMLKPMLARGELRLIGATTLDEYREN 323
Query: 362 KSGHPSLE 369
P+LE
Sbjct: 324 IEKDPALE 331
Score = 42.4 bits (98), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 77/191 (40%), Gaps = 28/191 (14%)
Query: 598 VHKFKELNSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTM---RRKGKFKDHSEV 654
V + + +E L + + L K+V QK+ + +++ V + R+G R G F
Sbjct: 559 VGRLMQGENEKLLHMEDYLGKRVIGQKEAIAAVSDAVRRSRAGISDPNRPTGSF------ 612
Query: 655 KEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRD 714
F G K ++AK LA +F V I +S + + S
Sbjct: 613 ------LFLGPTGVGKTELAKALADFLFDDEKAMVRIDMSEYMEKASVSRLIG------- 659
Query: 715 EQSCSYIE-----RFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEV 769
+ Y+ + EAV P+ V L ++VE+A+ + ++ GR+ G V
Sbjct: 660 -AAPGYVGYEQGGQLTEAVRRRPYSVVLFDEVEKANPEIFDVLLQVLDDGRLTDGQGRTV 718
Query: 770 SLGDAIVILSC 780
+ I+I++
Sbjct: 719 DFKNTILIMTS 729
>sp|P31540|HSP98_NEUCR Heat shock protein hsp98 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=hsp98
PE=1 SV=2
Length = 927
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 123/279 (44%), Gaps = 39/279 (13%)
Query: 12 LTAEAASVVKQAMTLARRRGHAQVTPLHVANTML---------------AASTGLLRTAC 56
T A ++ AM LA + H+Q+ P+H+A +L A++ L R
Sbjct: 7 FTDRAKKALEDAMALAEQYAHSQLLPVHLAVALLDPLPDPSKDQQNAPAGATSSLFRQVI 66
Query: 57 LQSHSHPLQCKALELCFNVALNRLPASTSTPMLGGHCQFPTISNALVAAFKRAQAHQRRG 116
++H P + + AL RLP+ P H +++ + ++A Q+
Sbjct: 67 ERAHGDP---QLFDRALKKALVRLPSQDPPP---DHV---SMAPSFHTVLRKANELQK-- 115
Query: 117 SIENQQQPLLAVKIELEQLIISILDDPSVSRVMREAGFSSTQVKSNVEQAVSLEICSQST 176
Q+ +AV + LI ++ ++PS+ ++EA ++ ++ QA+ ++
Sbjct: 116 ---TQKDTYIAV----DHLITALAEEPSIMNALKEANIPKPKLVTDAIQAIR---GTKRV 165
Query: 177 PVSSNKSKESNVLVLSQTASATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVG 234
+ ++E + + T T +++ +DP+ R E++ VI L + K N V++G
Sbjct: 166 DSRNADTEEEHENLAKFTIDMTAMAR-EGKIDPVIGREEEIRRVIRILSRRTKNNPVLIG 224
Query: 235 ECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSF 273
E VV G+ +I DVP+ L + K L L + +
Sbjct: 225 EPGVGKTTVVEGLAQRIVNADVPDNLANCKLLSLDVGAL 263
Score = 33.5 bits (75), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 65/182 (35%), Gaps = 13/182 (7%)
Query: 598 VHKFKELNSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEE 657
V + K E L + L K V QK+ V ++N + RSG S +
Sbjct: 579 VTRLKTSEKEKLLHMEKHLSKIVVGQKEAVQSVSNAIRLQRSGL----------SNPNQP 628
Query: 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQS 717
F G K + K LA +F + +S + + S S
Sbjct: 629 PSFLFCGPSGTGKTLLTKALAEFLFDDPKAMIRFDMSEYQERHSLSRMIGAPPGYVGHDS 688
Query: 718 CSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDAIVI 777
+ EA+ P + L ++VE+A + ++ GRI G V + IV+
Sbjct: 689 GG---QLTEALRRKPFSILLFDEVEKAAKEVLTVLLQLMDDGRITDGQGRVVDARNCIVV 745
Query: 778 LS 779
++
Sbjct: 746 MT 747
>sp|F4JVJ1|CLPB2_ARATH Putative chaperone protein ClpB2, chloroplastic OS=Arabidopsis
thaliana GN=CLPB2 PE=2 SV=1
Length = 623
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 123/298 (41%), Gaps = 67/298 (22%)
Query: 17 ASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALELCFNVA 76
AS AM+L+ H QVTPLH+ T+++ T + A + + +++ N +
Sbjct: 15 ASARSHAMSLS----HGQVTPLHLGVTLISDLTSVFYRAITSAGDGDISAQSVVNVINQS 70
Query: 77 LNRLPASTSTPMLGGHCQFPTISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIELEQLI 136
L +L ++ L K+ + L+
Sbjct: 71 LYKL----------------------------------------TKRNLGDTKVGVAVLV 90
Query: 137 ISILDDPSVSRVMREAGFSSTQVKSNVEQAVSLEICSQSTPVSSNKSKESNVLVLSQTAS 196
IS+L+D +S V++EAG +VKS VE+ V++ +
Sbjct: 91 ISLLEDSQISDVLKEAGVVPEKVKSEVEKL------------------RGEVILRALKTY 132
Query: 197 ATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKG 254
T + + LDP+ R+ ++ VIE L + K N V++GE VV G+ +I KG
Sbjct: 133 GTDLVEQAGKLDPVIGRHREIRRVIEVLSRRTKNNPVLIGEPGVGKTAVVEGLAQRILKG 192
Query: 255 DVPEALRDVKCLPLSISSFRHMN--RVEVEQRVEEIKNLVRSCLGRGIVLNLGDLEWA 310
DVP L VK + L + R + E+R++ + V G+ +VL + ++ A
Sbjct: 193 DVPINLTGVKLISLEFGAMVAGTTLRGQFEERLKSVLKAVEEAQGK-VVLFIDEIHMA 249
>sp|Q6N1H2|CLPB_RHOPA Chaperone protein ClpB OS=Rhodopseudomonas palustris (strain ATCC
BAA-98 / CGA009) GN=clpB PE=3 SV=1
Length = 879
Score = 64.3 bits (155), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/292 (23%), Positives = 130/292 (44%), Gaps = 27/292 (9%)
Query: 20 VKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALELCFNVALNR 79
++ A +LA R GH Q +PLH+ +L S GL ++ + +A+ AL +
Sbjct: 14 IQSAQSLAMREGHQQFSPLHILKVLLDDSEGLAGGLIDRAGGN---SRAILKATEEALGK 70
Query: 80 LPASTSTPMLGGHCQFPTISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIELEQLIISI 139
+P + + G Q ++ A AF A+ + V +E L +S+
Sbjct: 71 MPKVSGS----GAGQV-YLAPATARAFDAAEKAAEKAGDS-------FVTVERLLLALSL 118
Query: 140 LDDPSVSRVMREAGFSSTQVKSNVEQAVSLEICSQSTPVSSNKSKESNVLVLSQTASATK 199
D +++ + G + + + + +T ++ + + L+Q A K
Sbjct: 119 DKDSEAGQLLTKGGVTPQNLNAAINALRKGRTADSATAENAYDALKKYARDLTQAARDGK 178
Query: 200 VSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVP 257
LDP+ R+E++ I+ L + K N V++GE +V G+ +I GDVP
Sbjct: 179 -------LDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLALRILNGDVP 231
Query: 258 EALRDVKCLPLSISSF--RHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLGDL 307
E+L+D K L L + + R E E+R++ + N V + G GI+L + ++
Sbjct: 232 ESLKDKKLLALDMGALIAGAKYRGEFEERLKAVLNEVTAAEG-GIILFIDEM 282
>sp|Q92MK7|CLPB_RHIME Chaperone protein ClpB OS=Rhizobium meliloti (strain 1021) GN=clpB
PE=3 SV=1
Length = 868
Score = 63.5 bits (153), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 126/289 (43%), Gaps = 31/289 (10%)
Query: 20 VKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALELCFNVALNR 79
++ A T A GH Q TP HV +L G+ + ++ + + K + AL +
Sbjct: 14 LQSAQTYALAEGHQQFTPEHVLKVLLDDDQGMAASLIERAGGNAREAK---VGTAAALAK 70
Query: 80 LPASTSTPMLGGHCQFPTISNALVAAFKRAQ-AHQRRG-SIENQQQPLLAVKIELEQLII 137
LP T GG+ +S L F A+ A ++ G S ++ LLA+ IE
Sbjct: 71 LPKVT-----GGNGSV-YLSQPLAKVFTAAEDAAKKAGDSFVTVERLLLALAIESSAATA 124
Query: 138 SILDDPSVSRVMREAGFSSTQVKSNVEQAVSLEICSQSTPVSSNKSKESNVLVLSQTASA 197
SIL +AG + T++ + EI T S+N E L + A
Sbjct: 125 SILS---------KAGVTPTKLNQVIN-----EIRKGRTADSANA--EQGFDSLKKYARD 168
Query: 198 TKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGD 255
LDP+ R++++ I+ L + K N V++GE + G+ +I GD
Sbjct: 169 LTAEAREGKLDPVIGRDDEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIAEGLALRIVNGD 228
Query: 256 VPEALRDVKCLPLSISSF--RHMNRVEVEQRVEEIKNLVRSCLGRGIVL 302
VPE+L+D + + L + + R E E+R++ + N VRS G I+
Sbjct: 229 VPESLKDKRLMALDMGALIAGAKFRGEFEERLKAVLNEVRSEGGEIILF 277
>sp|O83110|CLPB_TREPA Chaperone protein ClpB OS=Treponema pallidum (strain Nichols)
GN=clpB PE=3 SV=1
Length = 878
Score = 63.5 bits (153), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 73/307 (23%), Positives = 137/307 (44%), Gaps = 45/307 (14%)
Query: 13 TAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHP-------LQ 65
T +A+ + A++LA H QV H+ + +L+ G++ + + P LQ
Sbjct: 7 TVKASEALNDAISLAEAENHGQVEEEHLLHALLSQKDGIISPLIEKIGAKPDFLYDELLQ 66
Query: 66 CKALELCFNVALNRLPASTSTPMLGGHCQFPTISNALVAAFKRAQAHQRRGSIENQQQPL 125
C L R P T P C PT+S A A R +++NQ +
Sbjct: 67 C----------LRRKPRVTG-PAAQTRCA-PTLSKAC--------ARAERLALKNQDE-- 104
Query: 126 LAVKIELEQLIISILD-DPSVSRVMREAGFSSTQVKSNVEQAVSLEICSQSTPVSSNKSK 184
+ E L+++I + D + +R++ G +S + + ++ + + P S+ +
Sbjct: 105 ---YVSCEHLLLAISETDSNTARLLHSQGITSKTISAALKDIRGSKRVTSQDPESTFQCL 161
Query: 185 ESNVLVLSQTASATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEG 242
E L+ A K+ DP+ R+E++ V++ L + K N V++GE
Sbjct: 162 EKYCRDLTTLAREEKI-------DPVIGRDEEIRRVMQVLSRRTKNNPVLIGEPGVGKTA 214
Query: 243 VVRGVIDKIEKGDVPEALRDVKCLPLSISSF--RHMNRVEVEQRVEEIKNLVRSCLGRGI 300
+V G+ +I GDVPE+L+ + L L + + R E E+R++ + V+ G G+
Sbjct: 215 IVEGLARRIVSGDVPESLKGKRLLSLDLGALVAGAKFRGEFEERLKAVIEAVQKSDG-GV 273
Query: 301 VLNLGDL 307
+L + +L
Sbjct: 274 ILFIDEL 280
Score = 34.7 bits (78), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 68/173 (39%), Gaps = 22/173 (12%)
Query: 612 LCNALEKKVPWQKDTVYDIANTVLKCRSG---TMRRKGKFKDHSEVKEETWLFFQGVDAD 668
L + L ++V Q + V I++ + + ++G T R G F G
Sbjct: 566 LESVLMQRVVGQDEAVRVISDAIRRNKAGLSDTRRPLGSF------------LCVGPTGV 613
Query: 669 AKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIE--RFAE 726
K ++A+ LA +F I +S + A S Y E + E
Sbjct: 614 GKTELARTLADFLFNDERALTRIDMSEYMEKHAIS-----RLIGAPPGYVGYDEGGQLTE 668
Query: 727 AVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDAIVILS 779
AV P+ V L ++VE+A F + ++ GR+ G V + I+I++
Sbjct: 669 AVRRRPYSVLLFDEVEKAHQDVFNIFLQILDDGRLTDGQGRVVDFRNTIIIMT 721
>sp|Q88VX7|CLPB_LACPL Chaperone protein ClpB OS=Lactobacillus plantarum (strain ATCC
BAA-793 / NCIMB 8826 / WCFS1) GN=clpB PE=3 SV=1
Length = 867
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 133/679 (19%), Positives = 251/679 (36%), Gaps = 103/679 (15%)
Query: 135 LIISILDDPS--VSRVMREAGFSSTQVKSNVEQAVSLEICSQSTPVSSNKSKESNVLVLS 192
L ++++D +++ + + G ++ QVK+ V++ I S N+ + L
Sbjct: 112 LALALMDQTGDQLTKYLNQQGITAGQVKNAVDR-----IRGGQRVTSRNQEDQYQAL--- 163
Query: 193 QTASATKVSKPRV-SLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVID 249
+ V + R + DP+ R+E+++ VI L K K N V++GE +V G+
Sbjct: 164 EKYGVDLVKQARQGNQDPVIGRDEEILDVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQ 223
Query: 250 KIEKGDVPEALRDVKCLPLSISSF--RHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLGDL 307
+I +GDVPE L+D L + S R E E+R++ + ++ G
Sbjct: 224 RIVRGDVPENLKDKTLFSLDMGSLIAGAKYRGEFEERLKAVLKEIKKSDG---------- 273
Query: 308 EWAEFRASSSEQVRGYYCSIEHII--------MEIGKLVCGIGENARFWLMGIATFQSYM 359
Q+ + I +I+ M+ G L+ + L+G T Y
Sbjct: 274 -----------QIIMFIDEIHNIVGAGKTEGSMDAGNLLKPMLARGELHLIGATTLDEYR 322
Query: 360 RCKSGHPSLETLWSLHPLTIPAGSLSLSLITTDSDLQSQSTSKKAESGVSWLLFEGEEEN 419
+ +LE + + P+ ++S+ L+ + GV +
Sbjct: 323 QYMEKDKALERRFQKVLVAEPSVEDTISI------LRGLKERFEIHHGVRI-------HD 369
Query: 420 KQLTCCADCSAKF-------EAEARSLQSSSCNSDSPTSSLPAWLQQYKNE------KKA 466
L A S ++ + + +S +S P L Q + ++A
Sbjct: 370 NALVAAAKLSDRYITDRYLPDKALDLVDEASAEIRVEMNSNPTELDQVNRQLMRLEVEEA 429
Query: 467 TLSNNDKDSGVRDLCKKWNSICNSIHKQPYYSERTLTFSSASPSSSTSGFSYDQQYPNFH 526
L D+ V+ L + ++ KQ SER + + + S + D+ +
Sbjct: 430 ALKKETDDASVKRLADVQKELASAKEKQRTLSERWDSEKKSLQALSDKKSALDKAKHDLE 489
Query: 527 KTHRDWAVVEPKQSWREHHFLFSHEASDKSTSEPSLRLYIPEHKDLKQPLSSNRNSTPNS 586
++ + +Q+ + H + E + H+D S + N
Sbjct: 490 NAENNYDL---EQAAKLQHGTIPKLEQELKAMEAN-----DHHEDWLVEESVTPDQIANV 541
Query: 587 TSSSDIMEMEYVHKFKELNSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTM---R 643
S M V K E L L + L ++V Q V +++ VL+ R+G R
Sbjct: 542 VSR---MTGIPVAKLVAGEREKLLHLADHLHERVVGQDAAVDAVSDAVLRSRAGLQDPNR 598
Query: 644 RKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADS 703
G F F G K ++AK LA +F + ++ V I +S +
Sbjct: 599 PLGSF------------MFLGPTGVGKTELAKALAENLFDADDHMVRIDMSEYMEK---- 642
Query: 704 TEDSRNKRSRDEQSCSYIE--RFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRI 761
E Y E + EAV NP+ + L +++E+A + ++ GR+
Sbjct: 643 -ESVSRLVGAAPGYVGYEEGGQLTEAVRRNPYSIVLFDEIEKAHPDVFNILLQVLDDGRL 701
Query: 762 VTSSGDEVSLGDAIVILSC 780
G V + I+I++
Sbjct: 702 TDGQGRTVDFKNTILIMTS 720
>sp|Q9PGC1|CLPB_XYLFA Chaperone protein ClpB OS=Xylella fastidiosa (strain 9a5c) GN=clpB
PE=3 SV=1
Length = 861
Score = 60.5 bits (145), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 128/301 (42%), Gaps = 40/301 (13%)
Query: 12 LTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSH-PLQCKALE 70
LT+ + + A +LA R H + P+HV + +L G R +Q+ + PL + L
Sbjct: 6 LTSRFQNALADAQSLAVGRDHTIIEPVHVFSALLDQQGGSTRPLLMQAGVNVPLLRERLT 65
Query: 71 LCFNVALNRLPASTSTPMLGGHCQFPTISNALVAAFKR----AQAHQRRGSIENQQQPLL 126
+ P + G + SN L F R AQ H + +
Sbjct: 66 EILE----------ALPKVSGQTVNVSPSNELSRLFHRTDKLAQQHGDQ---------FM 106
Query: 127 AVKIELEQLIISILDDPS-VSRVMREAGFSSTQVKSNVEQAVSLEICSQSTPVSSNKSKE 185
A E +++++DD + + +R AG ++++ +++ E ++ E
Sbjct: 107 AS----EWFVLAVVDDSGGLGQALRAAGAEKKKIEAAIDKLRGGETVQTENAEEQRQALE 162
Query: 186 SNVLVLSQTASATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGV 243
+ L+ A + K LDP+ R+E++ I+ L + K N V++GE +
Sbjct: 163 KYTIDLTARAESGK-------LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAI 215
Query: 244 VRGVIDKIEKGDVPEALRDVKCLPLSISSF--RHMNRVEVEQRVEEIKNLVRSCLGRGIV 301
V G+ +I G+VPE LR + L L + + R E E+R++ + N + GR I+
Sbjct: 216 VEGLAQRIVNGEVPEGLRSKRLLSLDLGALIAGAKFRGEFEERLKGVLNDLAKNEGRVIL 275
Query: 302 L 302
Sbjct: 276 F 276
>sp|Q87AX8|CLPB_XYLFT Chaperone protein ClpB OS=Xylella fastidiosa (strain Temecula1 /
ATCC 700964) GN=clpB PE=3 SV=1
Length = 861
Score = 60.1 bits (144), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 128/301 (42%), Gaps = 40/301 (13%)
Query: 12 LTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSH-PLQCKALE 70
LT+ + + A +LA R H + P+HV + +L G R +Q+ + PL + L
Sbjct: 6 LTSRFQNALADAQSLAVGRDHTIIEPVHVFSVLLDQQGGSTRPLLVQAGVNVPLLRERLT 65
Query: 71 LCFNVALNRLPASTSTPMLGGHCQFPTISNALVAAFKR----AQAHQRRGSIENQQQPLL 126
+ P + G + SN L F R AQ H + +
Sbjct: 66 EILE----------ALPKVSGQTVNVSPSNELSRLFHRTDKLAQQHGDQ---------FM 106
Query: 127 AVKIELEQLIISILDDPS-VSRVMREAGFSSTQVKSNVEQAVSLEICSQSTPVSSNKSKE 185
A E +++++DD + + +R AG ++++ +++ E ++ E
Sbjct: 107 AS----EWFVLAVVDDSGGLGQALRAAGAEKKKIEAAIDKLRGGETVQTENAEEQRQALE 162
Query: 186 SNVLVLSQTASATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGV 243
+ L+ A + K LDP+ R+E++ I+ L + K N V++GE +
Sbjct: 163 KYTIDLTARAESGK-------LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAI 215
Query: 244 VRGVIDKIEKGDVPEALRDVKCLPLSISSF--RHMNRVEVEQRVEEIKNLVRSCLGRGIV 301
V G+ +I G+VPE LR + L L + + R E E+R++ + N + GR I+
Sbjct: 216 VEGLAQRIVNGEVPEGLRSKRLLSLDLGALIAGAKFRGEFEERLKGVLNDLAKNEGRVIL 275
Query: 302 L 302
Sbjct: 276 F 276
>sp|Q97KG0|CLPB_CLOAB Chaperone protein ClpB OS=Clostridium acetobutylicum (strain ATCC
824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=clpB PE=3 SV=1
Length = 865
Score = 60.1 bits (144), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 85/189 (44%), Gaps = 24/189 (12%)
Query: 598 VHKFKELNSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEE 657
V K E L L + LEK+V Q + V +A+ V++ R+G KD S K
Sbjct: 554 VSKLVEGERNKLMRLSDELEKRVVGQTEAVKSVADAVIRARAG-------LKDMS--KPI 604
Query: 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALS----SFSSTRADSTEDSRNKRSR 713
F G K ++AK LAR++F S +N + I +S +S +R +
Sbjct: 605 GSFIFLGPTGVGKTELAKTLARVMFDSEDNIIRIDMSEYMEKYSVSRLIGSPPG------ 658
Query: 714 DEQSCSYIE--RFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSL 771
Y E + EAV P+ V L +++E+A F + + GR+ + G+ +
Sbjct: 659 ---YVGYEEGGQLTEAVRRKPYSVILFDEIEKAHSDVFNIFLQIFDDGRLTDNKGNTIDF 715
Query: 772 GDAIVILSC 780
++I+I++
Sbjct: 716 KNSIIIMTS 724
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/295 (21%), Positives = 122/295 (41%), Gaps = 24/295 (8%)
Query: 12 LTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALEL 71
LT + + T+A R H Q+ +H+ +++ GL+ + + + ++
Sbjct: 6 LTLKVQQAINDCQTIAVRYNHQQIDTIHLFMAIISQEDGLIPNILGKMGA---DVETVKR 62
Query: 72 CFNVALNRLPASTSTPMLGGHCQFPTISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIE 131
L+R+P +LG Q NA + A +R + RG ++ L + +E
Sbjct: 63 DTEAELDRMP-----KVLGEGAQ-----NASIYATRRFEEVFVRGEKISRDFKDLYISVE 112
Query: 132 LEQLIISILDDPSVSRVMREAGFSSTQVKSNVEQAVSLEICSQSTPVSSNKSKESNVLVL 191
L + +D ++ ++ + S + + + + S P E L
Sbjct: 113 HVMLALMDIDSGAIKSILDKNNISKKEFLKALREVRGNQRVDTSDP-------EGTYDAL 165
Query: 192 SQTASATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVID 249
++ + LDP+ R+E++ VI L + K N V++GE +V G+ +
Sbjct: 166 NKYGRDLVKDAKKHKLDPVIGRDEEIRRVIRILSRRTKNNPVLIGEPGVGKTAIVEGLAE 225
Query: 250 KIEKGDVPEALRDVKCLPLSISSF--RHMNRVEVEQRVEEIKNLVRSCLGRGIVL 302
+I +GDVPE L++ L + S R E E+R++ + V G+ I+
Sbjct: 226 RIVRGDVPEGLKNKIIFSLDMGSLVAGAKYRGEFEERLKAVLKEVERSEGKIILF 280
>sp|Q826F2|CLPB2_STRAW Chaperone protein ClpB 2 OS=Streptomyces avermitilis (strain ATCC
31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 /
MA-4680) GN=clpB2 PE=3 SV=1
Length = 879
Score = 59.7 bits (143), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 136/305 (44%), Gaps = 34/305 (11%)
Query: 12 LTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALEL 71
LT ++ +++A T A R GH +V H+ +L GL+ Q+ + P + +A
Sbjct: 6 LTQKSQEALQEAQTAAGRMGHTEVDGEHLLLALLDQEDGLIPRLLQQAGTEPKELRA--- 62
Query: 72 CFNVALNRLPASTSTPMLGGHCQFPT--ISNALVAAFKRAQAHQRRGSIENQQQPLLAVK 129
L+ P +T G F T ++ L AA E + + L
Sbjct: 63 AVREELSHRPKATGPGAAPGQV-FVTQRLARLLDAA-------------EREAKRLKDEY 108
Query: 130 IELEQLIISILDDPS---VSRVMREAGFSSTQVKSNVEQAVSLEICSQSTPVSSNKSKES 186
+ +E L++++ ++ S ++++AG + S + Q + + + P + ++ E
Sbjct: 109 VSVEHLLLALAEESSSTAAGLLLKQAGITRDSFLSALTQVRGNQRVTSANPEVAYEALEK 168
Query: 187 NVLVLSQTASATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVV 244
L A + + LDP+ R+ ++ V + L K K N V++G+ +V
Sbjct: 169 YGRDLVLEARSGR-------LDPVIGRDAEIRRVTQILSRKTKNNPVLIGDPGVGKTAIV 221
Query: 245 RGVIDKIEKGDVPEALRDVKCLPLSISSF--RHMNRVEVEQRVEEIKNLVRSCLGRGIVL 302
G+ +I +GDVPE LRD L + S R E E+R++ + + V++ GR I+L
Sbjct: 222 EGLAQRIVRGDVPEGLRDKTVFALDMGSLVAGAKYRGEFEERLKAVLSEVKAAEGR-ILL 280
Query: 303 NLGDL 307
+ +L
Sbjct: 281 FVDEL 285
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 80/192 (41%), Gaps = 30/192 (15%)
Query: 598 VHKFKELNSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTM---RRKGKFKDHSEV 654
V + +E E L L L ++V Q + V + + +++ RSG R G F
Sbjct: 556 VARLQEGEREKLLRLDEILRERVIGQDEAVKLVTDAIIRARSGIRDPRRPIGSF------ 609
Query: 655 KEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRD 714
F G K ++AK LAR +F S N V + +S + R+ SR
Sbjct: 610 ------IFLGPTGVGKTELAKTLARTLFDSEENMVRLDMSEYQE---------RHTVSRL 654
Query: 715 EQS----CSYIE--RFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDE 768
+ Y E + EAV P+ V L +++E+A + ++ GRI + G
Sbjct: 655 MGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEIEKAHTDVFNTLLQILDDGRITDAQGRT 714
Query: 769 VSLGDAIVILSC 780
V + ++I++
Sbjct: 715 VDFRNTVIIMTS 726
>sp|Q72AW6|CLPB_DESVH Chaperone protein ClpB OS=Desulfovibrio vulgaris (strain
Hildenborough / ATCC 29579 / NCIMB 8303) GN=clpB PE=3
SV=1
Length = 865
Score = 59.7 bits (143), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 68/298 (22%), Positives = 124/298 (41%), Gaps = 29/298 (9%)
Query: 12 LTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALEL 71
T ++ + +A +A R GH +V H+A+ ++ GL+ + P +A
Sbjct: 6 FTEKSQQALAEAQNIAVRFGHQEVDAEHLADALVRQEQGLVPRLLDRMGQKP---EAFAE 62
Query: 72 CFNVALNRLPASTSTPMLGGHCQFPTISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIE 131
L + PA + G +S L A +AQ R+ E +
Sbjct: 63 ALERELGKRPAVSGPGAAPGQI---FVSKRLNAVLVKAQDFARQLKDEY---------VS 110
Query: 132 LEQLIISILDDPS---VSRVMREAGFSSTQVKSNVEQAVSLEICSQSTPVSSNKSKESNV 188
+E + +L++P+ + R+ RE S +V +E + + + P + ++ +
Sbjct: 111 VEHIFCVLLEEPASTIMGRIAREFSLSREKVLGVLEDVRGSQRVTSANPEDTYEALQKYG 170
Query: 189 LVLSQTASATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRG 246
L + A K LDP+ R+ ++ VI L + K N V++GE +V G
Sbjct: 171 RDLVEEARKGK-------LDPVIGRDAEIRRVIRILSRRTKNNPVLIGEAGVGKTAIVEG 223
Query: 247 VIDKIEKGDVPEALRDVKCLPLSISSF--RHMNRVEVEQRVEEIKNLVRSCLGRGIVL 302
+ +I KGDVPE L++ L + + R E E+R++ + V GR I+
Sbjct: 224 LAHRILKGDVPEGLKERGLFALDMGALIAGAKYRGEFEERLKAVLKEVEKSEGRIIMF 281
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 76/187 (40%), Gaps = 22/187 (11%)
Query: 598 VHKFKELNSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTM---RRKGKFKDHSEV 654
V + E E L L + L ++V Q++ V ++ VL+ R+G R G F
Sbjct: 553 VTRLLESEREKLLRLADVLHERVVGQEEAVDAVSEAVLRARAGLSDPSRPIGSF------ 606
Query: 655 KEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRD 714
F G K ++ K LA +F + N V + +S + A +
Sbjct: 607 ------IFLGPTGVGKTELCKTLAEALFDTEENIVRLDMSEYMEKHAVA-----RLIGAP 655
Query: 715 EQSCSYIE--RFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLG 772
Y E + EAV P+ V L ++VE+A + ++ GR+ S G V
Sbjct: 656 PGYVGYDEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNTLLQILDDGRLTDSHGRTVDFR 715
Query: 773 DAIVILS 779
+ I+I++
Sbjct: 716 NTIIIMT 722
>sp|Q8XZR0|CLPB_RALSO Chaperone protein ClpB OS=Ralstonia solanacearum (strain GMI1000)
GN=clpB PE=3 SV=1
Length = 862
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/296 (22%), Positives = 126/296 (42%), Gaps = 31/296 (10%)
Query: 12 LTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALEL 71
LT + A +LA + + PLH+ ML G + ++ + K LE+
Sbjct: 6 LTTRFQEALADAQSLALGNDNPYIEPLHLLLAMLRQPDGATKNLLARAG---VNAKGLEI 62
Query: 72 CFNVALNRLPASTSTPMLGGHCQFPTISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIE 131
+ A+ RLP G Q +L+ QA ++ G Q I
Sbjct: 63 ALDNAIKRLPQVQG----GEQVQVGRDLGSLL------QATEKEGIKRGDQ------FIA 106
Query: 132 LEQLIISILDDPS-VSRVMREAGFSSTQVKSNVEQAVSLEICSQSTPVSSNKSKESNVLV 190
E ++++ DD RV RE G + +++ ++ + + S ++ + +
Sbjct: 107 SELFLLAVADDKGEAGRVAREHGLARRALEAAIDAVRGGQTVGSAEAESQREALKKYTID 166
Query: 191 LSQTASATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVI 248
L++ A K LDP+ R++++ I+ L + K N V++GE +V G+
Sbjct: 167 LTEQARIGK-------LDPVIGRDDEIRRAIQILQRRTKNNPVLIGEPGVGKTAIVEGLA 219
Query: 249 DKIEKGDVPEALRDVKCLPLSISSF--RHMNRVEVEQRVEEIKNLVRSCLGRGIVL 302
+I G+VPE+L++ + L L ++ R E E+R++ + N + G+ I+
Sbjct: 220 QRIINGEVPESLKNKRVLVLDMAGLLAGAKYRGEFEERLKAVLNDIAKEEGQTILF 275
Score = 42.0 bits (97), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 37/183 (20%), Positives = 74/183 (40%), Gaps = 12/183 (6%)
Query: 598 VHKFKELNSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEE 657
V K + + L + + L ++V Q + V +++ + + R+G E K
Sbjct: 551 VSKMMQGERDKLLRMEDRLHERVVGQDEAVRLVSDAIRRSRAGIA---------DENKPY 601
Query: 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQS 717
F G K ++ K LA +F S + + I +S F + S +
Sbjct: 602 GSFLFLGPTGVGKTELCKALAGFLFDSEEHLIRIDMSEFMEKHSVSRLIGAPPGYVGYEE 661
Query: 718 CSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDAIVI 777
Y+ EAV P+ V L+++VE+A + ++ GR+ G V + +++
Sbjct: 662 GGYL---TEAVRRKPYSVVLLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFKNTVIV 718
Query: 778 LSC 780
++
Sbjct: 719 MTS 721
>sp|Q7X2S8|CLPB_MEIRU Chaperone protein ClpB OS=Meiothermus ruber GN=clpB PE=3 SV=1
Length = 854
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 115/268 (42%), Gaps = 44/268 (16%)
Query: 13 TAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALELC 72
T +A + Q+ LAR H+++ H+A ML + GL ++ +P + +
Sbjct: 7 TEQARQAIAQSQVLARESAHSKIDLPHLAAVMLRDAAGLPAKIVQKAGQNP---QNIYQA 63
Query: 73 FNVALNRLPASTSTPMLGGHCQFPTISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIEL 132
L RLP + T GG +S+ L +A RA+ LA
Sbjct: 64 AQSELGRLPKVSGTE--GGQY----LSSRLASALGRAEK--------------LA----- 98
Query: 133 EQLIISILDDPSVSRVMREAGFSSTQVKSNVEQAVSLEICSQSTPVSSNKSKESNVLV-- 190
++L + ++ + E G+ Q S V QA+ EI T S + N L
Sbjct: 99 DELKDRFVALDTLLLALAETGYGGLQA-SAVRQALQ-EIRGGRTVNSEHAEGTYNALEQY 156
Query: 191 ---LSQTASATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVR 245
L++ A K LDP+ R+E++ VI+ L+ + K N V++GE VV
Sbjct: 157 GLDLTRQAEEGK-------LDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAVVE 209
Query: 246 GVIDKIEKGDVPEALRDVKCLPLSISSF 273
G+ +I KGDVPE L+ + + L + S
Sbjct: 210 GLAQRIVKGDVPEGLKGKRIVSLQMGSL 237
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 76/185 (41%), Gaps = 16/185 (8%)
Query: 598 VHKFKELNSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEE 657
V K E E L L + L K+V Q + + +A+ + + R+G KD + +
Sbjct: 538 VAKLMEGEREKLLRLEDELHKRVVGQDEAIVAVADAIRRARAG-------LKDPN--RPI 588
Query: 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSS--TRADSTEDSRNKRSRDE 715
F G K ++AK LA +F + N V I +S + T A +E
Sbjct: 589 GSFLFLGPTGVGKTELAKTLAASLFDTEENMVRIDMSEYQEKHTVARLIGAPPGYVGYEE 648
Query: 716 QSCSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDAI 775
+ EAV P+ V L +++E+A + ++ GR+ G V + +
Sbjct: 649 GG-----QLTEAVRRRPYSVILFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTV 703
Query: 776 VILSC 780
+IL+
Sbjct: 704 IILTS 708
>sp|Q89UL2|CLPB_BRAJA Chaperone protein ClpB OS=Bradyrhizobium japonicum (strain USDA
110) GN=clpB PE=3 SV=1
Length = 879
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 122/284 (42%), Gaps = 34/284 (11%)
Query: 13 TAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALELC 72
T + ++ A +LA R GH Q + LHV +L + GL A L + +A+
Sbjct: 7 TERSRGFIQSAQSLAVREGHQQFSTLHVLKVLLDDNEGL--AAGLIDRAGG-NSRAILKA 63
Query: 73 FNVALNRLPASTSTPMLGGHCQF---PTISNALVAAFKRAQAHQRRG-SIENQQQPLLAV 128
ALN++P + GG Q P ++ AA K A ++ G S ++ LL +
Sbjct: 64 TEDALNKVPKVSG----GGAGQIYLAPELARTFDAAEK---AGEKAGDSFVTVERLLLGL 116
Query: 129 KIELEQLIISILDDPSVSRVMREAGFSSTQVKSNVEQAVSLEICSQSTPVSSNKSKESNV 188
+E ++ + G + + + +E +T ++ + +
Sbjct: 117 TLE---------KTSEAGTILSKGGVTPQNLNAAIEALRKGRTADSATAENAYDALKKYA 167
Query: 189 LVLSQTASATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRG 246
L+Q A K LDP+ R+E++ I+ L + K N V++GE + G
Sbjct: 168 RDLTQAARDGK-------LDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIAEG 220
Query: 247 VIDKIEKGDVPEALRDVKCLPLSISSF--RHMNRVEVEQRVEEI 288
+ +I GDVPE+L+D K L L + + R E E+R++ +
Sbjct: 221 LALRIVNGDVPESLKDKKLLSLDLGALIAGAKYRGEFEERLKAV 264
Score = 42.0 bits (97), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 73/188 (38%), Gaps = 22/188 (11%)
Query: 598 VHKFKELNSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTM---RRKGKFKDHSEV 654
V K E + L + ++L K+V Q + V+ +A V + R+G R G F
Sbjct: 549 VDKMLEGEKDKLLKMEDSLGKRVVGQAEAVHAVATAVRRSRAGLQDPNRPMGSF------ 602
Query: 655 KEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADS--TEDSRNKRS 712
F G K ++ K LA +F V + +S + + S
Sbjct: 603 ------MFLGPTGVGKTELTKALAEYLFNDETAMVRLDMSEYMEKHSVSRLIGAPPGYVG 656
Query: 713 RDEQSCSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLG 772
DE EAV P++V L +++E+A + ++ GR+ G V
Sbjct: 657 YDEGGA-----LTEAVRRRPYQVVLFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFR 711
Query: 773 DAIVILSC 780
+ ++I++
Sbjct: 712 NTLIIMTS 719
>sp|Q9CKC0|CLPB_PASMU Chaperone protein ClpB OS=Pasteurella multocida (strain Pm70)
GN=clpB PE=3 SV=1
Length = 855
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/299 (23%), Positives = 132/299 (44%), Gaps = 37/299 (12%)
Query: 12 LTAEAASVVKQAMTLARRRGHAQVTPLHVANTML---AASTGLLRTACLQSHSHPLQCKA 68
T + +++A +LA + + + P+H+ +L ST + TA + PL
Sbjct: 6 FTTKFQQALQEAQSLAIGKDNQFIEPVHLLTALLNQQGGSTAPILTAS--GANLPL---- 59
Query: 69 LELCFNVALNRLPASTSTPMLGGHCQFP-TISNALVAAFKRAQAHQRRGSIENQQQPLLA 127
L N L++LP + + GG Q ++ N L K AQ Q +
Sbjct: 60 LRNELNAELSKLPQVSGS---GGDVQVSRSLVNLLNLCDKLAQQRQDKF----------- 105
Query: 128 VKIELEQLIISILDDPSVSRVMREAGFSSTQVKSNVEQAVSLEICSQSTPVSSNKSKESN 187
I E +++ L+D ++ V+++ G ++ +E+ + + S ++ E
Sbjct: 106 --ISSELFLLAALEDKTLGDVLKKCGVKKENLQQAIEKVRGGQNVNDPNAEESRQALEKY 163
Query: 188 VLVLSQTASATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVR 245
+ L+ A + K LDP+ R+E++ I+ L + K N V++GE +V
Sbjct: 164 TIDLTARAESGK-------LDPVIGRDEEIRRAIQVLQRRTKNNPVLIGEPGVGKTAIVE 216
Query: 246 GVIDKIEKGDVPEALRDVKCLPLSISSF--RHMNRVEVEQRVEEIKNLVRSCLGRGIVL 302
G+ +I G+VPE L++ + L L + + R E E+R++ + N + GR I+
Sbjct: 217 GLAQRIVNGEVPEGLKNKRVLSLDMGALIAGAKYRGEFEERLKAVLNELSKEEGRVILF 275
Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 74/185 (40%), Gaps = 18/185 (9%)
Query: 598 VHKFKELNSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTM---RRKGKFKDHSEV 654
V K E E L + L K+V Q + + ++N + + R+G R G F
Sbjct: 547 VAKMMEGEKEKLLRMEEELHKRVIGQHEAIEAVSNAIRRSRAGLSDPNRPIGSF------ 600
Query: 655 KEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRD 714
F G K ++ K LA +F N V I +S F + S
Sbjct: 601 ------LFLGPTGVGKTELCKTLANFLFDDENAMVRIDMSEFMEKHSVSRLVGAPPGYVG 654
Query: 715 EQSCSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDA 774
+ Y+ EAV P+ V L+++VE+A + + ++ GR+ G V +
Sbjct: 655 YEEGGYL---TEAVRRRPYSVILLDEVEKAHHDVFNILLQVLDDGRLTDGQGRTVDFRNT 711
Query: 775 IVILS 779
+VI++
Sbjct: 712 VVIMT 716
>sp|P63288|CLPB_MYCTU Chaperone protein ClpB OS=Mycobacterium tuberculosis GN=clpB PE=3
SV=1
Length = 848
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 117/611 (19%), Positives = 221/611 (36%), Gaps = 104/611 (17%)
Query: 207 LDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVK 264
LDP+ R+ ++ V++ L + K N V++GE +V G+ +I GDVPE+LRD
Sbjct: 177 LDPVIGRDNEIRRVVQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVAGDVPESLRDKT 236
Query: 265 CLPLSISSFRHMN--RVEVEQRVEEIKNLVRSCLGRGIVLNLGDLEWAEFRASSSEQVRG 322
+ L + S + R E E+R++ + + +++ G+ I+ + +L ++ E
Sbjct: 237 IVALDLGSMVAGSKYRGEFEERLKAVLDDIKNSAGQ-IITFIDELHTIVGAGATGEGA-- 293
Query: 323 YYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMR--------------CKSGHPSL 368
M+ G ++ + L+G T Y + G PS+
Sbjct: 294 ---------MDAGNMIKPMLARGELRLVGATTLDEYRKHIEKDAALERRFQQVYVGEPSV 344
Query: 369 ETLWSL-----------HPLTIPAGSLSLSLITTDSDLQSQSTSKKA----ESGVSWLLF 413
E + H + I +L + +D + ++ KA + S L
Sbjct: 345 EDTIGILRGLKDRYEVHHGVRITDSALVAAATLSDRYITARFLPDKAIDLVDEAASRLRM 404
Query: 414 EGEEENKQLTCCADCSAKFEAEARSLQSSSCNSDSPTSSLPAWLQQYKNEKKATLSNNDK 473
E + ++ + E E +L S D ++ A L+ ++K L+
Sbjct: 405 EIDSRPVEIDEVERLVRRLEIEEMAL---SKEEDEASAERLAKLRSELADQKEKLA---- 457
Query: 474 DSGVRDLCKKWNSICNSIHKQPYYSERTLTFSSASPSSSTSG---FSYDQQYPNFHKTHR 530
+L +W + N+I E+ S + G + + +Y + +
Sbjct: 458 -----ELTTRWQNEKNAIEIVRDLKEQLEALRGESERAERDGDLAKAAELRYGRIPEVEK 512
Query: 531 DWAVVEPKQSWREHHFLFSHEASDKSTSEPSLRLYIPEHKDLKQPLSSNRNSTPNSTSSS 590
P+ RE L D S IP + L+ ++
Sbjct: 513 KLDAALPQAQAREQVMLKEEVGPDDIADVVSAWTGIPAGRLLE-------------GETA 559
Query: 591 DIMEMEYVHKFKELNSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKD 650
++ ME + L K+V QK V +++ V + R+G
Sbjct: 560 KLLRME-----------------DELGKRVIGQKAAVTAVSDAVRRSRAGV--------- 593
Query: 651 HSEVKEETWLF-FQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRN 709
S+ T F F G K ++AK LA +F V I +S + +
Sbjct: 594 -SDPNRPTGAFMFLGPTGVGKTELAKALADFLFDDERAMVRIDMSEYGEKHTVARLIGAP 652
Query: 710 KRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEV 769
++ + EAV P+ V L +++E+A + ++ GR+ G V
Sbjct: 653 PGYVGYEAGG---QLTEAVRRRPYTVVLFDEIEKAHPDVFDVLLQVLDEGRLTDGHGRTV 709
Query: 770 SLGDAIVILSC 780
+ I+IL+
Sbjct: 710 DFRNTILILTS 720
>sp|P63287|CLPB_MYCBO Chaperone protein ClpB OS=Mycobacterium bovis (strain ATCC BAA-935
/ AF2122/97) GN=clpB PE=3 SV=1
Length = 848
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 117/611 (19%), Positives = 221/611 (36%), Gaps = 104/611 (17%)
Query: 207 LDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVK 264
LDP+ R+ ++ V++ L + K N V++GE +V G+ +I GDVPE+LRD
Sbjct: 177 LDPVIGRDNEIRRVVQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVAGDVPESLRDKT 236
Query: 265 CLPLSISSFRHMN--RVEVEQRVEEIKNLVRSCLGRGIVLNLGDLEWAEFRASSSEQVRG 322
+ L + S + R E E+R++ + + +++ G+ I+ + +L ++ E
Sbjct: 237 IVALDLGSMVAGSKYRGEFEERLKAVLDDIKNSAGQ-IITFIDELHTIVGAGATGEGA-- 293
Query: 323 YYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMR--------------CKSGHPSL 368
M+ G ++ + L+G T Y + G PS+
Sbjct: 294 ---------MDAGNMIKPMLARGELRLVGATTLDEYRKHIEKDAALERRFQQVYVGEPSV 344
Query: 369 ETLWSL-----------HPLTIPAGSLSLSLITTDSDLQSQSTSKKA----ESGVSWLLF 413
E + H + I +L + +D + ++ KA + S L
Sbjct: 345 EDTIGILRGLKDRYEVHHGVRITDSALVAAATLSDRYITARFLPDKAIDLVDEAASRLRM 404
Query: 414 EGEEENKQLTCCADCSAKFEAEARSLQSSSCNSDSPTSSLPAWLQQYKNEKKATLSNNDK 473
E + ++ + E E +L S D ++ A L+ ++K L+
Sbjct: 405 EIDSRPVEIDEVERLVRRLEIEEMAL---SKEEDEASAERLAKLRSELADQKEKLA---- 457
Query: 474 DSGVRDLCKKWNSICNSIHKQPYYSERTLTFSSASPSSSTSG---FSYDQQYPNFHKTHR 530
+L +W + N+I E+ S + G + + +Y + +
Sbjct: 458 -----ELTTRWQNEKNAIEIVRDLKEQLEALRGESERAERDGDLAKAAELRYGRIPEVEK 512
Query: 531 DWAVVEPKQSWREHHFLFSHEASDKSTSEPSLRLYIPEHKDLKQPLSSNRNSTPNSTSSS 590
P+ RE L D S IP + L+ ++
Sbjct: 513 KLDAALPQAQAREQVMLKEEVGPDDIADVVSAWTGIPAGRLLE-------------GETA 559
Query: 591 DIMEMEYVHKFKELNSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKD 650
++ ME + L K+V QK V +++ V + R+G
Sbjct: 560 KLLRME-----------------DELGKRVIGQKAAVTAVSDAVRRSRAGV--------- 593
Query: 651 HSEVKEETWLF-FQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRN 709
S+ T F F G K ++AK LA +F V I +S + +
Sbjct: 594 -SDPNRPTGAFMFLGPTGVGKTELAKALADFLFDDERAMVRIDMSEYGEKHTVARLIGAP 652
Query: 710 KRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEV 769
++ + EAV P+ V L +++E+A + ++ GR+ G V
Sbjct: 653 PGYVGYEAGG---QLTEAVRRRPYTVVLFDEIEKAHPDVFDVLLQVLDEGRLTDGHGRTV 709
Query: 770 SLGDAIVILSC 780
+ I+IL+
Sbjct: 710 DFRNTILILTS 720
>sp|Q8P6A0|CLPB_XANCP Chaperone protein ClpB OS=Xanthomonas campestris pv. campestris
(strain ATCC 33913 / NCPPB 528 / LMG 568) GN=clpB PE=3
SV=1
Length = 861
Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 108/266 (40%), Gaps = 30/266 (11%)
Query: 12 LTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALEL 71
LT+ + A +LA R H + P+HV +L S G R QS + AL
Sbjct: 6 LTSRFQQALADAQSLAVGRDHNIIEPVHVLAALLDQSGGSTRPLLSQSG---VNVPALRE 62
Query: 72 CFNVALNRLPASTSTPMLGGHCQFPTISNALV-AAFKRAQAHQRRGSIENQQQPLLAVKI 130
AL+ LP + G+ N L+ K AQ H I
Sbjct: 63 RLGEALDTLPKVSGQE---GNLSIGNDLNRLLNQTDKLAQQHG-------------DAFI 106
Query: 131 ELEQLIISILDDPS-VSRVMREAGFSSTQVKSNVEQAVSLEICSQSTPVSSNKSKESNVL 189
E +++ DD S + +R AG ++++ +++ E ++ E +
Sbjct: 107 ASEWFVLAAADDASPLGVALRAAGGDKKKIEAAIDKLRGGETVQSENAEEQRQALEKYTI 166
Query: 190 VLSQTASATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGV 247
L+ A + K LDP+ R+E++ I+ L + K N V++GE +V G+
Sbjct: 167 DLTARAESGK-------LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGL 219
Query: 248 IDKIEKGDVPEALRDVKCLPLSISSF 273
+I G+VPE LR + L L + +
Sbjct: 220 AQRIINGEVPEGLRGKRVLSLDMGAL 245
Score = 41.2 bits (95), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 38/186 (20%), Positives = 76/186 (40%), Gaps = 18/186 (9%)
Query: 598 VHKFKELNSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTM---RRKGKFKDHSEV 654
V+K E + L + + L ++V Q++ + +++ V + R+G R G F
Sbjct: 548 VNKMLEGERDKLLRMEDELHRRVVGQEEAIKVVSDAVRRSRAGLSDPNRPSGSF------ 601
Query: 655 KEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRD 714
F G K ++ K LA +F S + I +S F + S
Sbjct: 602 ------LFLGPTGVGKTELCKALADFLFDSTEAMIRIDMSEFMEKHSVSRLIGAPPGYVG 655
Query: 715 EQSCSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDA 774
+ Y+ EAV P+ + L+++VE+A + ++ GR+ G V +
Sbjct: 656 YEEGGYL---TEAVRRRPYSLILLDEVEKAHADVFNILLQVLDDGRLTDGQGRTVDFRNT 712
Query: 775 IVILSC 780
+++++
Sbjct: 713 VIVMTS 718
>sp|Q89YY3|CLPB_BACTN Chaperone protein ClpB OS=Bacteroides thetaiotaomicron (strain ATCC
29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=clpB
PE=3 SV=1
Length = 862
Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/296 (19%), Positives = 133/296 (44%), Gaps = 32/296 (10%)
Query: 12 LTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALEL 71
T ++ V++A+ L + RG + P H+ + ++ + + + + L
Sbjct: 6 FTIKSQEAVQEAVNLVQSRGQQAIEPAHILHGVMKVGENVTNFIF---QKLGMNGQQVAL 62
Query: 72 CFNVALNRLPASTSTPMLGGHCQFPTISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIE 131
+ + LP + GG P +S ++A + + E +
Sbjct: 63 VVDKQIESLPKVS-----GGE---PYLSRESNEVLQKATQYSKEMGDEF---------VS 105
Query: 132 LEQLIISILDDPS-VSRVMREAGFSSTQVKSNVEQAVSLEICSQSTPVSSNKSKESNVLV 190
LE +++++L S VS ++++AG + ++++ + + E + + + +S E +
Sbjct: 106 LEHILLALLTVKSTVSTILKDAGMTEKELRNAINELRKGEKVTSQSSEDNYQSLEKYAIN 165
Query: 191 LSQTASATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVI 248
L++ A + K LDP+ R+E++ V++ L + K N +++GE +V G+
Sbjct: 166 LNEAARSGK-------LDPVIGRDEEIRRVLQILSRRTKNNPILIGEPGTGKTAIVEGLA 218
Query: 249 DKIEKGDVPEALRDVKCLPLSISSFRHMNRV--EVEQRVEEIKNLVRSCLGRGIVL 302
+I +GDVPE L++ + L + + + E E+R++ + N V+ G I+
Sbjct: 219 HRILRGDVPENLKNKQVYSLDMGALVAGAKYKGEFEERLKSVVNEVKKSEGDIILF 274
Score = 40.0 bits (92), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 77/193 (39%), Gaps = 22/193 (11%)
Query: 598 VHKFKELNSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTM---RRKGKFKDHSEV 654
V K + + L L + L ++V Q + + +A+ V + R+G R G F
Sbjct: 546 VSKMMQSEKDKLLHLEDELHQRVIGQDEAIEAVADAVRRSRAGLQDPKRPIGSF------ 599
Query: 655 KEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRD 714
F G K ++AK LA +F + I +S + + S
Sbjct: 600 ------IFLGTTGVGKTELAKALAEFLFDDESMMTRIDMSEYQEKHSVS-----RLVGAP 648
Query: 715 EQSCSYIE--RFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLG 772
Y E + EA+ P+ V L +++E+A + ++ GR+ + G V+
Sbjct: 649 PGYVGYDEGGQLTEAIRRKPYSVVLFDEIEKAHPDVFNILLQVLDDGRLTDNKGRVVNFK 708
Query: 773 DAIVILSCESFSS 785
+ I+I++ SS
Sbjct: 709 NTIIIMTSNMGSS 721
>sp|Q9A9T4|CLPB_CAUCR Chaperone protein ClpB OS=Caulobacter crescentus (strain ATCC 19089
/ CB15) GN=clpB PE=3 SV=1
Length = 859
Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 117/290 (40%), Gaps = 36/290 (12%)
Query: 16 AASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALELCFNV 75
A V+ A +LA RGH Q P H+ +L GL R + P
Sbjct: 10 AKQAVQSAQSLALARGHQQFAPEHILKVLLEEKDGLSRALIQSAGGRP------------ 57
Query: 76 ALNRLPASTSTPMLGGHCQFPTISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIELEQL 135
++L T + + P + A + + + E + + E+L
Sbjct: 58 --DQLDGGVETLL----AKTPRVDGAGGQLYMKPDTARVFAEAEKSAKAAGDAFVTTERL 111
Query: 136 IISILDDPS-VSRVMREAGFSSTQVKSNVEQAVSLEICSQST---PVSSNKSKESNVLVL 191
+I+I + +++ +EAG S A SLE + + + + + E L
Sbjct: 112 LIAIAKEGGEAAKLFKEAGVS----------AQSLETAANAMRKGRTADSANAEEGYEAL 161
Query: 192 SQTASATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVID 249
+ A + LDP+ R+E++ I+ L + K N V++GE +V G+
Sbjct: 162 KRYARDLTAAARDGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAL 221
Query: 250 KIEKGDVPEALRDVKCLPLSISSF--RHMNRVEVEQRVEEIKNLVRSCLG 297
+I GDVPE+L+D K L L + S R E E+R++ + V + G
Sbjct: 222 RIVNGDVPESLKDKKLLSLDMGSLIAGAKYRGEFEERLKAVLGEVTAAEG 271
>sp|Q7WSY8|CLPB_PROFC Chaperone protein ClpB OS=Propionibacterium freudenreichii subsp.
shermanii (strain ATCC 9614 / CIP 103027 / CIRM-BIA1)
GN=clpB PE=2 SV=2
Length = 866
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 75/304 (24%), Positives = 130/304 (42%), Gaps = 45/304 (14%)
Query: 12 LTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPL------Q 65
LT + V A+ LA +G+ P+H+ + ML +S PL
Sbjct: 6 LTTMSRDAVTAAVRLALTKGNPTAEPVHLLHAMLMVP---------ESSVAPLLKAVGAD 56
Query: 66 CKALELCFNVALNRLPASTSTPMLGGHCQFPTISNALVAAFKRAQAHQRRGSIENQ---Q 122
++ + A+++LP+S+ G P +S AL A A R + +Q
Sbjct: 57 AARVDGAASAAIDKLPSSS-----GSSVAQPQLSGALARVL--ADAETRADKLGDQFVST 109
Query: 123 QPLLAVKIELEQLIISILDDPSVSRVMREAGFSSTQVKSNVEQAVSLEICSQSTPVSSNK 182
+ LL E++ +IL V+ E F+ ++ + A +S S
Sbjct: 110 EHLLIALAEVDSDAKNILASNGVTTAALEKAFNDSRGDKRITSA-------ESEGGESAL 162
Query: 183 SKESNVLVLSQTASATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASI 240
K S + L+Q A K LDP+ R+ ++ V + L + K N V++GE
Sbjct: 163 DKYS--IDLTQRAKDGK-------LDPVIGRDSEIRRVAQVLSRRTKNNPVLIGEAGVGK 213
Query: 241 EGVVRGVIDKIEKGDVPEALRDVKCLPLSISSF--RHMNRVEVEQRVEEIKNLVRSCLGR 298
VV G+ +I KGDVP++L+ + + L ++S R E E+R++ + N ++S G+
Sbjct: 214 TAVVEGLAQRIVKGDVPDSLKGRRLVSLDLASMVAGAKYRGEFEERLKAVLNEIKSAEGQ 273
Query: 299 GIVL 302
I
Sbjct: 274 IITF 277
>sp|Q8DEV2|CLPB_VIBVU Chaperone protein ClpB OS=Vibrio vulnificus (strain CMCP6) GN=clpB
PE=3 SV=1
Length = 857
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 125/287 (43%), Gaps = 36/287 (12%)
Query: 12 LTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLR--TACLQSHSHPLQCKAL 69
T++ + A +LA R H + P+H+ +L + +R L L+ K
Sbjct: 6 FTSKFQIAISDAQSLALGRDHQYIEPVHLMVALLDQNGSPIRPLLTILNVDVTHLRSKLS 65
Query: 70 ELCFNVALNRLPASTSTPMLGGHCQFPTISNALVAAFKRAQ--AHQRRGSIENQQQPLLA 127
E+ L+RLP + +GG Q +S+A+ A F A +R+ + + + LLA
Sbjct: 66 EM-----LDRLPKVSG---IGGDVQ---LSSAMGAMFNLCDKIAQKRQDAYISSEIFLLA 114
Query: 128 VKIELEQLIISILDDPSVSRVMREAGFSSTQVKSNVEQAVSLEICSQSTPVSSNKSKESN 187
+I D + ++ +E G + +V +EQ + + ++ E
Sbjct: 115 ----------AIEDRGPLGQLFKELGLTEQKVSQAIEQIRGGQKVNDQNAEELRQALEKF 164
Query: 188 VLVLSQTASATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVR 245
+ L++ A K LDP+ R++++ I+ L + K N V++GE +V
Sbjct: 165 TIDLTERAEQGK-------LDPVIGRDDEIRRTIQVLQRRTKNNPVIIGEPGVGKTAIVE 217
Query: 246 GVIDKIEKGDVPEALRDVKCLPLSISSF--RHMNRVEVEQRVEEIKN 290
G+ +I +VPE LR + L L + + R E E+R++ + N
Sbjct: 218 GLAQRIINNEVPEGLRGRRVLSLDMGALVAGAKYRGEFEERLKSVLN 264
Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 12/189 (6%)
Query: 598 VHKFKELNSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEE 657
V K E E L + L K+V QK+ V +AN + + R+G D + K
Sbjct: 548 VSKMLEAEKEKLLRMEEVLHKRVIGQKEAVEVVANAIRRSRAG-------LSDPN--KPI 598
Query: 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQS 717
F G K ++ K LA +F S + V I +S F + + +
Sbjct: 599 GSFLFLGPTGVGKTELCKTLANFMFDSEDAMVRIDMSEFMEKHSVARLVGAPPGYVGYEE 658
Query: 718 CSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDAIVI 777
Y+ EAV P+ V L+++VE+A + ++ GR+ G V + +VI
Sbjct: 659 GGYL---TEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVI 715
Query: 778 LSCESFSSR 786
++ SSR
Sbjct: 716 MTSNLGSSR 724
>sp|Q7MNK1|CLPB_VIBVY Chaperone protein ClpB OS=Vibrio vulnificus (strain YJ016) GN=clpB
PE=3 SV=1
Length = 857
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 122/279 (43%), Gaps = 36/279 (12%)
Query: 20 VKQAMTLARRRGHAQVTPLHVANTMLAASTGLLR--TACLQSHSHPLQCKALELCFNVAL 77
+ A +LA R H + P+H+ +L + +R L L+ K E+ L
Sbjct: 14 ISDAQSLALGRDHQYIEPVHLMVALLDQNGSPIRPLLTILNVDVTHLRSKLSEM-----L 68
Query: 78 NRLPASTSTPMLGGHCQFPTISNALVAAFKRAQ--AHQRRGSIENQQQPLLAVKIELEQL 135
+RLP + +GG Q +S+A+ A F A +R+ + + + LLA
Sbjct: 69 DRLPKVSG---IGGDVQ---LSSAMGAMFNLCDKIAQKRQDAYISSEIFLLA-------- 114
Query: 136 IISILDDPSVSRVMREAGFSSTQVKSNVEQAVSLEICSQSTPVSSNKSKESNVLVLSQTA 195
+I D + ++ +E G + +V +EQ + + ++ E + L++ A
Sbjct: 115 --AIEDRGPLGQLFKELGLTEQKVSQAIEQIRGGQKVNDQNAEELRQALEKFTIDLTERA 172
Query: 196 SATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEK 253
K LDP+ R++++ I+ L + K N V++GE +V G+ +I
Sbjct: 173 EQGK-------LDPVIGRDDEIRRTIQVLQRRTKNNPVIIGEPGVGKTAIVEGLAQRIIN 225
Query: 254 GDVPEALRDVKCLPLSISSF--RHMNRVEVEQRVEEIKN 290
+VPE LR + L L + + R E E+R++ + N
Sbjct: 226 NEVPEGLRGRRVLSLDMGALVAGAKYRGEFEERLKSVLN 264
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 12/189 (6%)
Query: 598 VHKFKELNSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEE 657
V K E E L + L K+V QK+ V +AN + + R+G D + K
Sbjct: 548 VSKMLEAEKEKLLRMEEVLHKRVIGQKEAVEVVANAIRRSRAG-------LSDPN--KPI 598
Query: 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQS 717
F G K ++ K LA +F S + V I +S F + + +
Sbjct: 599 GSFLFLGPTGVGKTELCKTLANFMFDSEDAMVRIDMSEFMEKHSVARLVGAPPGYVGYEE 658
Query: 718 CSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDAIVI 777
Y+ EAV P+ V L+++VE+A + ++ GR+ G V + +VI
Sbjct: 659 GGYL---TEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVI 715
Query: 778 LSCESFSSR 786
++ SSR
Sbjct: 716 MTSNLGSSR 724
>sp|Q1RGR1|CLPB_RICBR Chaperone protein ClpB OS=Rickettsia bellii (strain RML369-C)
GN=clpB PE=3 SV=1
Length = 858
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 127/300 (42%), Gaps = 28/300 (9%)
Query: 12 LTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALEL 71
TA A S + +A + H Q+ PLH+ ++ TG++RT S + L
Sbjct: 6 FTAHAKSAITNCQHIAAKNDHQQILPLHLLASLFNEDTGIIRTLINNSGGN---LNILAD 62
Query: 72 CFNVALNRLPASTSTPMLGGHCQFPTISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIE 131
V LN++P + GG + S L+ +RA + N + ++
Sbjct: 63 QVQVELNKIP---KVQVDGGGTIYS--SAELLKVLQRADDLAK-----NNGDSFVTIERI 112
Query: 132 LEQLIISILDDPSVSRVMREAGFSSTQVKSNVEQAVSLEICSQSTPVSSNKSKESNVLVL 191
LE L D+ +++ G SS ++ +++ Q + + +S E++ L
Sbjct: 113 LEAL---SFDNTIAGKILTNNGISSKKLAASILQL-------RKGKKADTESAENSYDAL 162
Query: 192 SQTASATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVID 249
+ LDPI R+E++ ++ L + K N V++GE ++ G+
Sbjct: 163 KKYGRDVTELAESGKLDPIIGRDEEIRRTVQVLSRRMKNNPVLIGEPGVGKTAIIEGLAQ 222
Query: 250 KIEKGDVPEALRDVKCLPLSISSF--RHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLGDL 307
+I DVPE L + + + L + + R E E+R++ + ++ G I+L + +L
Sbjct: 223 RIFSKDVPETLINCRIIELDMGALIAGAKYRGEFEERLKAVLGEIKESSGE-IILFIDEL 281
Score = 37.7 bits (86), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 69/178 (38%), Gaps = 22/178 (12%)
Query: 607 ENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTM---RRKGKFKDHSEVKEETWLFFQ 663
E L + L + V Q + + +++ V + R+G R G F F
Sbjct: 556 ERLLVMEQKLRESVIGQDEAIKSVSDAVRRSRAGIQDINRPLGSF------------LFL 603
Query: 664 GVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADS--TEDSRNKRSRDEQSCSYI 721
G K ++ K LA +F N + I +S + A S D+
Sbjct: 604 GPTGVGKTELTKALAGFLFDDRNAILRIDMSEYMEKHAISRLIGAPPGYVGYDQGGV--- 660
Query: 722 ERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDAIVILS 779
EAV P++V L ++VE+A + ++ GR+ S G V + I++L+
Sbjct: 661 --LTEAVRRRPYQVILFDEVEKAHPDIFNIMLQILDEGRLTDSQGITVDFKNTIIVLT 716
>sp|Q9KU18|CLPB_VIBCH Chaperone protein ClpB OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=clpB PE=3 SV=1
Length = 857
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/277 (22%), Positives = 121/277 (43%), Gaps = 32/277 (11%)
Query: 20 VKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALELCFNVALNR 79
+ A +LA R H + P+H+ +L + +R + +Q ++ L+R
Sbjct: 14 ISDAQSLALGRDHQYIEPVHLMVALLDQNGSPIRPLLTMLNVDVMQLRS---KLGEMLDR 70
Query: 80 LPASTSTPMLGGHCQFPTISNALVAAFKRAQ--AHQRRGSIENQQQPLLAVKIELEQLII 137
LP + +GG Q +S+AL + F A +R+ + + + LLA
Sbjct: 71 LPKVSG---IGGDVQ---LSSALGSLFNLCDKVAQKRQDAYISSEIYLLA---------- 114
Query: 138 SILDDPSVSRVMREAGFSSTQVKSNVEQAVSLEICSQSTPVSSNKSKESNVLVLSQTASA 197
+I D + +++E G + +V +E+ + + ++ E + L++ A
Sbjct: 115 AIEDKGPLGHLLKEFGLTEKKVSEAIEKIRGGQKVNDPNAEELRQALEKFTIDLTERAEQ 174
Query: 198 TKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGD 255
K LDP+ R++++ I+ L + K N V++GE +V G+ +I +
Sbjct: 175 GK-------LDPVIGRDDEIRRTIQVLQRRTKNNPVIIGEPGVGKTAIVEGLAQRIINNE 227
Query: 256 VPEALRDVKCLPLSISSF--RHMNRVEVEQRVEEIKN 290
VPE LR + L L + + R E E+R++ + N
Sbjct: 228 VPEGLRGRRVLSLDMGALVAGAKYRGEFEERLKSVLN 264
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 79/192 (41%), Gaps = 18/192 (9%)
Query: 598 VHKFKELNSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTM---RRKGKFKDHSEV 654
V K E E L + + L K+V QK+ V +AN + + R+G R G F
Sbjct: 548 VSKMLEAEKEKLLRMEDVLHKRVIGQKEAVEVVANAIRRSRAGLSDPNRPIGSF------ 601
Query: 655 KEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRD 714
F G K ++ K LA +F S + V + +S F + +
Sbjct: 602 ------LFLGPTGVGKTELCKTLANFLFDSEDAMVRVDMSEFMEKHSVARLVGAPPGYVG 655
Query: 715 EQSCSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDA 774
+ Y+ EAV P+ V L+++VE+A + ++ GR+ G V +
Sbjct: 656 YEEGGYL---TEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNT 712
Query: 775 IVILSCESFSSR 786
+VI++ SSR
Sbjct: 713 VVIMTSNLGSSR 724
>sp|Q8PHQ4|CLPB_XANAC Chaperone protein ClpB OS=Xanthomonas axonopodis pv. citri (strain
306) GN=clpB PE=3 SV=2
Length = 861
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 110/272 (40%), Gaps = 42/272 (15%)
Query: 12 LTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALEL 71
LT+ + A +LA R H + P+HV +L S G R PL +A
Sbjct: 6 LTSRFQQALADAQSLAVGRDHNIIEPVHVLAALLDQSGGSTR---------PLLSQA--- 53
Query: 72 CFNVAL--NRLPASTST-PMLGGHCQFPTISNALVAAF----KRAQAHQRRGSIENQQQP 124
NV L RL + T P + G +I N L K AQ H
Sbjct: 54 GVNVPLLRERLGEALDTLPKVSGQEGNLSIGNDLNRLLNQTDKLAQQHG----------- 102
Query: 125 LLAVKIELEQLIISILDDPS-VSRVMREAGFSSTQVKSNVEQAVSLEICSQSTPVSSNKS 183
I E +++ DD S + +R AG ++++ +++ E ++
Sbjct: 103 --DAFIASEWFVLAAADDASPLGVALRAAGGDKKKIEAAIDKLRGGETVQSENAEEQRQA 160
Query: 184 KESNVLVLSQTASATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIE 241
E + L+ A + K LDP+ R+E++ I+ L + K N V++GE
Sbjct: 161 LEKYTIDLTARAESGK-------LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKT 213
Query: 242 GVVRGVIDKIEKGDVPEALRDVKCLPLSISSF 273
+V G+ +I G+VPE LR + L L + +
Sbjct: 214 AIVEGLAQRIINGEVPEGLRGKRVLSLDMGAL 245
Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/186 (19%), Positives = 74/186 (39%), Gaps = 18/186 (9%)
Query: 598 VHKFKELNSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTM---RRKGKFKDHSEV 654
V+K E + L + + L +V Q + + +++ V + R+G R G F
Sbjct: 548 VNKMLEGERDKLLRMEDELHHRVVGQNEAIKVVSDAVRRSRAGLSDPNRPSGSF------ 601
Query: 655 KEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRD 714
F G K ++ K LA +F S + I +S F + +
Sbjct: 602 ------LFLGPTGVGKTELCKALADFLFDSTEAMIRIDMSEFMEKHSVARLIGAPPGYVG 655
Query: 715 EQSCSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDA 774
+ Y+ EAV P+ + L+++VE+A + ++ GR+ G V +
Sbjct: 656 YEEGGYL---TEAVRRRPYSLILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNT 712
Query: 775 IVILSC 780
+++++
Sbjct: 713 VIVMTS 718
>sp|P35594|CLPE_STRPN ATP-dependent Clp protease ATP-binding subunit ClpE
OS=Streptococcus pneumoniae serotype 4 (strain ATCC
BAA-334 / TIGR4) GN=clpE PE=3 SV=2
Length = 752
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 91/224 (40%), Gaps = 34/224 (15%)
Query: 598 VHKFKELNSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSG---TMRRKGKFKDHSEV 654
V KE L L L+ V Q D V IA + + R G R G F
Sbjct: 430 VGDLKEKEQSQLIHLAEDLKSHVIGQDDAVDKIAKAIRRNRVGLGTPNRPIGSF------ 483
Query: 655 KEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTR--ADSTEDSRNKRS 712
F G K +++K+LA +FGS ++ + +S + A
Sbjct: 484 ------LFVGPTGVGKTELSKQLAIELFGSADSMIRFDMSEYMEKHSVAKLVGAPPGYVG 537
Query: 713 RDEQSCSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLG 772
DE + E V +NP+ + L+++VE+A F + ++ GR+ G VS
Sbjct: 538 YDEAG-----QLTEKVRHNPYSLILLDEVEKAHPDVMHMFLQVLDDGRLTDGQGRTVSFK 592
Query: 773 DAIVILSCESFSSRSRACSPPTKQKSDGCEEEKGAAMEGTSPSV 816
DAI+I++ + + ++ A S G GAA EG + SV
Sbjct: 593 DAIIIMTSNAGTGKTEA--------SVGF----GAAREGRTNSV 624
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 65/125 (52%), Gaps = 10/125 (8%)
Query: 173 SQSTPVSSNKSKESNVLVLSQTASATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNF 230
+Q+ P S K L+ + T++++ R +DP+ R+++++ VIE L + K N
Sbjct: 101 AQTPPPSQEKG-----LLEEFGINVTEIAR-RGDIDPVIGRDDEIIRVIEILNRRTKNNP 154
Query: 231 VVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMN--RVEVEQRVEEI 288
V++GE VV G+ KI GDVP L+ + + L + S R + E+R++++
Sbjct: 155 VLIGEPGVGKTAVVEGLAQKIVDGDVPHKLQGKQVIRLDVVSLVQGTGIRGQFEERMQKL 214
Query: 289 KNLVR 293
+R
Sbjct: 215 MEEIR 219
>sp|Q7CEG6|CLPB_BRUSU Chaperone protein ClpB OS=Brucella suis biovar 1 (strain 1330)
GN=clpB PE=2 SV=1
Length = 874
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 122/289 (42%), Gaps = 31/289 (10%)
Query: 20 VKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALELCFNVALNR 79
++ A T A G+ Q TP H+ ++ GL + ++ + + + AL +
Sbjct: 14 IQSAQTFALSSGNQQFTPEHILKVLIDDDEGLAASLVERAGG---RVGDVRMGLQSALEK 70
Query: 80 LPASTSTPMLGGHCQFPTISNALVAAFKRAQ--AHQRRGSIENQQQPLLAVKIELEQLII 137
LP + GG+ Q +S L F A+ A + S ++ L A+ +E
Sbjct: 71 LPKVS-----GGNDQL-YLSQPLAKVFSLAEELASKAGDSFVTVERLLTALAME------ 118
Query: 138 SILDDPSVSRVMREAGFSSTQVKSNVEQAVSLEICSQSTPVSSNKSKESNVLVLSQTASA 197
S ++ AG + T + + + + + S ESN L + A
Sbjct: 119 ---KSAKTSEILSAAGVTPTALNRVINDM-------RKGRTADSASAESNYDALKKYARD 168
Query: 198 TKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGD 255
LDP+ R+E++ I+ L + K N V++GE + G+ +I GD
Sbjct: 169 LTEDARAGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIAEGLALRIVNGD 228
Query: 256 VPEALRDVKCLPLSISSF--RHMNRVEVEQRVEEIKNLVRSCLGRGIVL 302
VPE+L+D + + L + + R E E+R++ + + V++ G+ I+
Sbjct: 229 VPESLKDKQLMALDMGALIAGAKYRGEFEERLKAVLSEVQTAAGQIILF 277
Score = 38.9 bits (89), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 71/188 (37%), Gaps = 22/188 (11%)
Query: 598 VHKFKELNSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTM---RRKGKFKDHSEV 654
V + E E L + + + K+V Q + V I+ V + R+G R G F
Sbjct: 548 VDRMLEGEREKLLRMEDEIGKRVVGQGEAVQAISKAVRRARAGLQDPNRPIGSF------ 601
Query: 655 KEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRD 714
F G K ++ K LA +F V I +S F + S
Sbjct: 602 ------IFLGPTGVGKTELTKALASFLFQDDTAMVRIDMSEFMEKHSVS-----RLIGAP 650
Query: 715 EQSCSYIER--FAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLG 772
Y E EAV P++V L +++E+A + ++ GR+ G V
Sbjct: 651 PGYVGYEEGGVLTEAVRRRPYQVILFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFR 710
Query: 773 DAIVILSC 780
+ ++I++
Sbjct: 711 NTVIIMTS 718
>sp|Q8YJ91|CLPB_BRUME Chaperone protein ClpB OS=Brucella melitensis biotype 1 (strain 16M
/ ATCC 23456 / NCTC 10094) GN=clpB PE=3 SV=2
Length = 874
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 122/289 (42%), Gaps = 31/289 (10%)
Query: 20 VKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALELCFNVALNR 79
++ A T A G+ Q TP H+ ++ GL + ++ + + + AL +
Sbjct: 14 IQSAQTFALSSGNQQFTPEHILKVLIDDDEGLAASLVERAGG---RVGDVRMGLQSALEK 70
Query: 80 LPASTSTPMLGGHCQFPTISNALVAAFKRAQ--AHQRRGSIENQQQPLLAVKIELEQLII 137
LP + GG+ Q +S L F A+ A + S ++ L A+ +E
Sbjct: 71 LPKVS-----GGNDQL-YLSQPLAKVFSLAEELASKAGDSFVTVERLLTALAME------ 118
Query: 138 SILDDPSVSRVMREAGFSSTQVKSNVEQAVSLEICSQSTPVSSNKSKESNVLVLSQTASA 197
S ++ AG + T + + + + + S ESN L + A
Sbjct: 119 ---KSAKTSEILSAAGVTPTALNRVINDM-------RKGRTADSASAESNYDALKKYARD 168
Query: 198 TKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGD 255
LDP+ R+E++ I+ L + K N V++GE + G+ +I GD
Sbjct: 169 LTEDARAGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIAEGLALRIVNGD 228
Query: 256 VPEALRDVKCLPLSISSF--RHMNRVEVEQRVEEIKNLVRSCLGRGIVL 302
VPE+L+D + + L + + R E E+R++ + + V++ G+ I+
Sbjct: 229 VPESLKDKQLMALDMGALIAGAKYRGEFEERLKAVLSEVQTAAGQIILF 277
Score = 38.9 bits (89), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 71/188 (37%), Gaps = 22/188 (11%)
Query: 598 VHKFKELNSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTM---RRKGKFKDHSEV 654
V + E E L + + + K+V Q + V I+ V + R+G R G F
Sbjct: 548 VDRMLEGEREKLLRMEDEIGKRVVGQGEAVQAISKAVRRARAGLQDPNRPIGSF------ 601
Query: 655 KEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRD 714
F G K ++ K LA +F V I +S F + S
Sbjct: 602 ------IFLGPTGVGKTELTKALASFLFQDDTAMVRIDMSEFMEKHSVS-----RLIGAP 650
Query: 715 EQSCSYIER--FAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLG 772
Y E EAV P++V L +++E+A + ++ GR+ G V
Sbjct: 651 PGYVGYEEGGVLTEAVRRRPYQVILFDEIEKAHPDVFNVLLQVLDDGRLTDGQGHTVDFR 710
Query: 773 DAIVILSC 780
+ ++I++
Sbjct: 711 NTVIIMTS 718
>sp|Q5HQI5|CLPB_STAEQ Chaperone protein ClpB OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=clpB PE=3 SV=1
Length = 869
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 79/188 (42%), Gaps = 22/188 (11%)
Query: 598 VHKFKELNSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTM---RRKGKFKDHSEV 654
V K E E L SL + L K+V Q V +++ V++ R+G R G F
Sbjct: 552 VSKLVETEREKLLSLSDILHKRVVGQDKAVDLVSDAVVRARAGIKDPNRPIGSF------ 605
Query: 655 KEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADS--TEDSRNKRS 712
F G K ++AK LA +F S + + I +S + A S
Sbjct: 606 ------LFLGPTGVGKTELAKSLASSLFDSEKHMIRIDMSEYMEKHAVSRLIGAPPGYVG 659
Query: 713 RDEQSCSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLG 772
DE + EAV NP+ V L+++VE+A + ++ GR+ S G V
Sbjct: 660 HDEGG-----QLTEAVRRNPYSVILLDEVEKAHSDVFNVLLQILDEGRLTDSKGRSVDFK 714
Query: 773 DAIVILSC 780
+ I+I++
Sbjct: 715 NTIIIMTS 722
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Query: 207 LDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVK 264
+DP+ R+E++ I L K K N V++GE +V G+ +I + DVPE+L D
Sbjct: 176 MDPVIGRDEEIRNTIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVRKDVPESLLDKT 235
Query: 265 CLPLSISSF--RHMNRVEVEQRVEEIKNLVRSCLGRGIVL 302
L +S+ R E E+R++ + V+ GR I+
Sbjct: 236 IFELDLSALVAGAKYRGEFEERLKAVLKEVKESEGRIILF 275
>sp|Q8CPT5|CLPB_STAES Chaperone protein ClpB OS=Staphylococcus epidermidis (strain ATCC
12228) GN=clpB PE=3 SV=1
Length = 869
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 79/188 (42%), Gaps = 22/188 (11%)
Query: 598 VHKFKELNSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTM---RRKGKFKDHSEV 654
V K E E L SL + L K+V Q V +++ V++ R+G R G F
Sbjct: 552 VSKLVETEREKLLSLSDILHKRVVGQDKAVDLVSDAVVRARAGIKDPNRPIGSF------ 605
Query: 655 KEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADS--TEDSRNKRS 712
F G K ++AK LA +F S + + I +S + A S
Sbjct: 606 ------LFLGPTGVGKTELAKSLASSLFDSEKHMIRIDMSEYMEKHAVSRLIGAPPGYVG 659
Query: 713 RDEQSCSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLG 772
DE + EAV NP+ V L+++VE+A + ++ GR+ S G V
Sbjct: 660 HDEGG-----QLTEAVRRNPYSVILLDEVEKAHSDVFNVLLQILDEGRLTDSKGRSVDFK 714
Query: 773 DAIVILSC 780
+ I+I++
Sbjct: 715 NTIIIMTS 722
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Query: 207 LDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVK 264
+DP+ R+E++ I L K K N V++GE +V G+ +I + DVPE+L D
Sbjct: 176 MDPVIGRDEEIRNTIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVRKDVPESLLDKT 235
Query: 265 CLPLSISSF--RHMNRVEVEQRVEEIKNLVRSCLGRGIVL 302
L +S+ R E E+R++ + V+ GR I+
Sbjct: 236 IFELDLSALVAGAKYRGEFEERLKAVLKEVKESEGRIILF 275
>sp|Q929G7|CLPB_LISIN Chaperone protein ClpB OS=Listeria innocua serovar 6a (strain CLIP
11262) GN=clpB PE=3 SV=1
Length = 866
Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 80/188 (42%), Gaps = 22/188 (11%)
Query: 598 VHKFKELNSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTM---RRKGKFKDHSEV 654
V K E E L L + L +KV Q D V +++ VL+ R+G R G F
Sbjct: 554 VTKLVEGEREKLLKLADVLHQKVIGQDDAVQLVSDAVLRARAGIKDPKRPIGSF------ 607
Query: 655 KEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRD 714
F G K ++AK LA +F S ++ + I +S + + S
Sbjct: 608 ------IFLGPTGVGKTELAKALAYNMFDSEDHMIRIDMSEYMEKHSVS-----RLVGAP 656
Query: 715 EQSCSYIE--RFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLG 772
Y E + EAV NP+ + L++++E+A + ++ GRI S G +
Sbjct: 657 PGYVGYEEGGQLTEAVRRNPYSIVLLDEIEKAHPDVFNILLQVLDDGRITDSQGRLIDFK 716
Query: 773 DAIVILSC 780
+ ++I++
Sbjct: 717 NTVIIMTS 724
Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 68/295 (23%), Positives = 122/295 (41%), Gaps = 30/295 (10%)
Query: 10 QGLTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKAL 69
Q T + + A LA H ++ +HV +L S R + + +AL
Sbjct: 4 QKFTQQVQQTIADAQNLAIASEHQEIDVIHVFKVLLTESDFAKRAYDVAE----VNVEAL 59
Query: 70 ELCFNVALNRLPASTSTPMLGGHCQFPTISNALVAAFKRAQAHQRRGSIENQQQPLLAVK 129
+ + +L ++P + + + G +S AL + A E +Q+ L
Sbjct: 60 QKVVDESLRKIPVVSGSGVNYGQA----MSQALFQLMRDA---------EKEQKQLDDDF 106
Query: 130 IELEQLIISILDDPS--VSRVMREAGFSSTQVKSNVEQAVSLEICSQSTPVSSNKSKESN 187
+ E LI++++D S ++ +++ S Q+ + L+I S N E N
Sbjct: 107 VSTEHLILAVMDQKSNPITVELKKQNKSKKQINEAI-----LKIRGGKKVTSQNA--EEN 159
Query: 188 VLVLSQTASATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVR 245
L++ LDP+ R+ ++ VI L K K N V++GE +V
Sbjct: 160 YEALTKYGRDLVAEVRSGKLDPVIGRDAEIRNVIRILSRKTKNNPVLIGEPGVGKTAIVE 219
Query: 246 GVIDKIEKGDVPEALRDVKCLPLSISSF--RHMNRVEVEQRVEEIKNLVRSCLGR 298
G+ +I + DVPE L+D + L I S R E E+R++ + V+ G+
Sbjct: 220 GLAQRIVRKDVPEGLKDKTIISLDIGSLIAGAKYRGEFEERLKAVLQEVKQSDGQ 274
>sp|P63284|CLPB_ECOLI Chaperone protein ClpB OS=Escherichia coli (strain K12) GN=clpB
PE=1 SV=1
Length = 857
Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 126/289 (43%), Gaps = 40/289 (13%)
Query: 12 LTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTG----LLRTACLQSHSHPLQCK 67
LT + + A +LA + + PLH+ + +L G LL +A + +
Sbjct: 6 LTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQ------ 59
Query: 68 ALELCFNVALNRLPASTSTPMLGGHCQFPTISNALVAAFKR-AQAHQRRGSIENQQQPLL 126
L N ALNRLP T GG Q P S LV + Q+RG +N
Sbjct: 60 -LRTDINQALNRLPQVEGT---GGDVQ-P--SQDLVRVLNLCDKLAQKRG--DN------ 104
Query: 127 AVKIELEQLIISILDD-PSVSRVMREAGFSSTQVKSNVEQAVSLEICSQSTPVSSNKSKE 185
I E +++ L+ +++ +++ AG ++ + +EQ E + ++ +
Sbjct: 105 --FISSELFVLAALESRGTLADILKAAGATTANITQAIEQMRGGESVNDQGAEDQRQALK 162
Query: 186 SNVLVLSQTASATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGV 243
+ L++ A K LDP+ R+E++ I+ L + K N V++GE +
Sbjct: 163 KYTIDLTERAEQGK-------LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAI 215
Query: 244 VRGVIDKIEKGDVPEALRDVKCLPLSISSF--RHMNRVEVEQRVEEIKN 290
V G+ +I G+VPE L+ + L L + + R E E+R++ + N
Sbjct: 216 VEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLN 264
Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 72/185 (38%), Gaps = 18/185 (9%)
Query: 598 VHKFKELNSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTM---RRKGKFKDHSEV 654
V + E E L + L +V Q + V ++N + + R+G R G F
Sbjct: 548 VSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSF------ 601
Query: 655 KEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRD 714
F G K ++ K LA +F S V I +S F + S
Sbjct: 602 ------LFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHSVSRLVGAPPGYVG 655
Query: 715 EQSCSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDA 774
+ Y+ EAV P+ V L+++VE+A + ++ GR+ G V +
Sbjct: 656 YEEGGYL---TEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNT 712
Query: 775 IVILS 779
+VI++
Sbjct: 713 VVIMT 717
>sp|P63286|CLPB_ECOL6 Chaperone protein ClpB OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=clpB PE=3 SV=1
Length = 857
Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 126/289 (43%), Gaps = 40/289 (13%)
Query: 12 LTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTG----LLRTACLQSHSHPLQCK 67
LT + + A +LA + + PLH+ + +L G LL +A + +
Sbjct: 6 LTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQ------ 59
Query: 68 ALELCFNVALNRLPASTSTPMLGGHCQFPTISNALVAAFKR-AQAHQRRGSIENQQQPLL 126
L N ALNRLP T GG Q P S LV + Q+RG +N
Sbjct: 60 -LRTDINQALNRLPQVEGT---GGDVQ-P--SQDLVRVLNLCDKLAQKRG--DN------ 104
Query: 127 AVKIELEQLIISILDD-PSVSRVMREAGFSSTQVKSNVEQAVSLEICSQSTPVSSNKSKE 185
I E +++ L+ +++ +++ AG ++ + +EQ E + ++ +
Sbjct: 105 --FISSELFVLAALESRGTLADILKAAGATTANITQAIEQMRGGESVNDQGAEDQRQALK 162
Query: 186 SNVLVLSQTASATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGV 243
+ L++ A K LDP+ R+E++ I+ L + K N V++GE +
Sbjct: 163 KYTIDLTERAEQGK-------LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAI 215
Query: 244 VRGVIDKIEKGDVPEALRDVKCLPLSISSF--RHMNRVEVEQRVEEIKN 290
V G+ +I G+VPE L+ + L L + + R E E+R++ + N
Sbjct: 216 VEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLN 264
Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 72/185 (38%), Gaps = 18/185 (9%)
Query: 598 VHKFKELNSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTM---RRKGKFKDHSEV 654
V + E E L + L +V Q + V ++N + + R+G R G F
Sbjct: 548 VSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSF------ 601
Query: 655 KEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRD 714
F G K ++ K LA +F S V I +S F + S
Sbjct: 602 ------LFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHSVSRLVGAPPGYVG 655
Query: 715 EQSCSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDA 774
+ Y+ EAV P+ V L+++VE+A + ++ GR+ G V +
Sbjct: 656 YEEGGYL---TEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNT 712
Query: 775 IVILS 779
+VI++
Sbjct: 713 VVIMT 717
>sp|P63285|CLPB_ECO57 Chaperone protein ClpB OS=Escherichia coli O157:H7 GN=clpB PE=3
SV=1
Length = 857
Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 126/289 (43%), Gaps = 40/289 (13%)
Query: 12 LTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTG----LLRTACLQSHSHPLQCK 67
LT + + A +LA + + PLH+ + +L G LL +A + +
Sbjct: 6 LTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQ------ 59
Query: 68 ALELCFNVALNRLPASTSTPMLGGHCQFPTISNALVAAFKR-AQAHQRRGSIENQQQPLL 126
L N ALNRLP T GG Q P S LV + Q+RG +N
Sbjct: 60 -LRTDINQALNRLPQVEGT---GGDVQ-P--SQDLVRVLNLCDKLAQKRG--DN------ 104
Query: 127 AVKIELEQLIISILDD-PSVSRVMREAGFSSTQVKSNVEQAVSLEICSQSTPVSSNKSKE 185
I E +++ L+ +++ +++ AG ++ + +EQ E + ++ +
Sbjct: 105 --FISSELFVLAALESRGTLADILKAAGATTANITQAIEQMRGGESVNDQGAEDQRQALK 162
Query: 186 SNVLVLSQTASATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGV 243
+ L++ A K LDP+ R+E++ I+ L + K N V++GE +
Sbjct: 163 KYTIDLTERAEQGK-------LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAI 215
Query: 244 VRGVIDKIEKGDVPEALRDVKCLPLSISSF--RHMNRVEVEQRVEEIKN 290
V G+ +I G+VPE L+ + L L + + R E E+R++ + N
Sbjct: 216 VEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLN 264
Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 72/185 (38%), Gaps = 18/185 (9%)
Query: 598 VHKFKELNSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTM---RRKGKFKDHSEV 654
V + E E L + L +V Q + V ++N + + R+G R G F
Sbjct: 548 VSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSF------ 601
Query: 655 KEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRD 714
F G K ++ K LA +F S V I +S F + S
Sbjct: 602 ------LFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHSVSRLVGAPPGYVG 655
Query: 715 EQSCSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDA 774
+ Y+ EAV P+ V L+++VE+A + ++ GR+ G V +
Sbjct: 656 YEEGGYL---TEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNT 712
Query: 775 IVILS 779
+VI++
Sbjct: 713 VVIMT 717
>sp|Q8Y570|CLPB_LISMO Chaperone protein ClpB OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=clpB PE=1 SV=1
Length = 866
Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 80/188 (42%), Gaps = 22/188 (11%)
Query: 598 VHKFKELNSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTM---RRKGKFKDHSEV 654
V K E E L L + L +KV Q D V +++ VL+ R+G R G F
Sbjct: 554 VTKLVEGEREKLLKLADVLHQKVIGQDDAVQLVSDAVLRARAGIKDPKRPIGSF------ 607
Query: 655 KEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRD 714
F G K ++AK LA +F S ++ + I +S + + S
Sbjct: 608 ------IFLGPTGVGKTELAKALAFNMFDSEDHMIRIDMSEYMEKHSVS-----RLVGAP 656
Query: 715 EQSCSYIE--RFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLG 772
Y E + EAV NP+ + L++++E+A + ++ GRI S G +
Sbjct: 657 PGYIGYEEGGQLTEAVRRNPYSIVLLDEIEKAHPDVFNILLQVLDDGRITDSQGRLIDFK 716
Query: 773 DAIVILSC 780
+ ++I++
Sbjct: 717 NTVIIMTS 724
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 118/295 (40%), Gaps = 30/295 (10%)
Query: 10 QGLTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKAL 69
Q T + + A LA H ++ HV +L S R + + AL
Sbjct: 4 QKFTQQVQQTIADAQNLAIASEHQEIDVAHVFKVLLTESDFAKRVYDVAE----VDTDAL 59
Query: 70 ELCFNVALNRLPASTSTPMLGGHCQFPTISNALVAAFKRAQAHQRRGSIENQQQPLLAVK 129
+ L ++P + + + G +S AL + A E +QQ L
Sbjct: 60 QKVIENTLEKIPVVSGSGVNYGQA----MSQALFQLMRDA---------EKEQQQLEDDF 106
Query: 130 IELEQLIISILDDPS--VSRVMREAGFSSTQVKSNVEQAVSLEICSQSTPVSSNKSKESN 187
+ E LI++++D S ++ ++ + Q+K + L+I S N E N
Sbjct: 107 VSTEHLILAVMDQKSNPITAELKNQHKAKKQIKEAI-----LKIRGGKRVTSQNA--EEN 159
Query: 188 VLVLSQTASATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVR 245
L++ LDP+ R+ ++ VI L K K N V++GE +V
Sbjct: 160 YEALTKYGRDLVAEVRSGKLDPVIGRDAEIRNVIRILSRKTKNNPVLIGEPGVGKTAIVE 219
Query: 246 GVIDKIEKGDVPEALRDVKCLPLSISSF--RHMNRVEVEQRVEEIKNLVRSCLGR 298
G+ +I + DVPE L+D + L I S R E E+R++ + V+ G+
Sbjct: 220 GLAQRIVRKDVPEGLKDKTIISLDIGSLIAGAKYRGEFEERLKAVLQEVKQSDGQ 274
>sp|G2K265|CLPB_LISM4 Chaperone protein ClpB OS=Listeria monocytogenes serotype 1/2a
(strain 10403S) GN=clpB PE=2 SV=1
Length = 866
Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 80/188 (42%), Gaps = 22/188 (11%)
Query: 598 VHKFKELNSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTM---RRKGKFKDHSEV 654
V K E E L L + L +KV Q D V +++ VL+ R+G R G F
Sbjct: 554 VTKLVEGEREKLLKLADVLHQKVIGQDDAVQLVSDAVLRARAGIKDPKRPIGSF------ 607
Query: 655 KEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRD 714
F G K ++AK LA +F S ++ + I +S + + S
Sbjct: 608 ------IFLGPTGVGKTELAKALAFNMFDSEDHMIRIDMSEYMEKHSVS-----RLVGAP 656
Query: 715 EQSCSYIE--RFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLG 772
Y E + EAV NP+ + L++++E+A + ++ GRI S G +
Sbjct: 657 PGYIGYEEGGQLTEAVRRNPYSIVLLDEIEKAHPDVFNILLQVLDDGRITDSQGRLIDFK 716
Query: 773 DAIVILSC 780
+ ++I++
Sbjct: 717 NTVIIMTS 724
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 118/295 (40%), Gaps = 30/295 (10%)
Query: 10 QGLTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKAL 69
Q T + + A LA H ++ HV +L S R + + AL
Sbjct: 4 QKFTQQVQQTIADAQNLAIASEHQEIDVAHVFKVLLTESDFAKRVYDVAE----VDTDAL 59
Query: 70 ELCFNVALNRLPASTSTPMLGGHCQFPTISNALVAAFKRAQAHQRRGSIENQQQPLLAVK 129
+ L ++P + + + G +S AL + A E +QQ L
Sbjct: 60 QKVIENTLEKIPVVSGSGVNYGQA----MSQALFQLMRDA---------EKEQQQLEDDF 106
Query: 130 IELEQLIISILDDPS--VSRVMREAGFSSTQVKSNVEQAVSLEICSQSTPVSSNKSKESN 187
+ E LI++++D S ++ ++ + Q+K + L+I S N E N
Sbjct: 107 VSTEHLILAVMDQKSNPITAELKNQHKAKKQIKEAI-----LKIRGGKRVTSQNA--EEN 159
Query: 188 VLVLSQTASATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVR 245
L++ LDP+ R+ ++ VI L K K N V++GE +V
Sbjct: 160 YEALTKYGRDLVAEVRSGKLDPVIGRDAEIRNVIRILSRKTKNNPVLIGEPGVGKTAIVE 219
Query: 246 GVIDKIEKGDVPEALRDVKCLPLSISSF--RHMNRVEVEQRVEEIKNLVRSCLGR 298
G+ +I + DVPE L+D + L I S R E E+R++ + V+ G+
Sbjct: 220 GLAQRIVRKDVPEGLKDKTIISLDIGSLIAGAKYRGEFEERLKAVLQEVKQSDGQ 274
>sp|Q74X11|CLPB_YERPE Chaperone protein ClpB OS=Yersinia pestis GN=clpB PE=3 SV=2
Length = 857
Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 121/288 (42%), Gaps = 38/288 (13%)
Query: 12 LTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALEL 71
LT++ + A +LA R + + PLH+ + +L G +R S + L
Sbjct: 6 LTSKFQLALADAQSLALGRDNQFIEPLHLMSALLNQDGGTVRPLL---TSAGINVARLRS 62
Query: 72 CFNVALNRLPASTSTPMLGGHCQFPTISNALVAAF----KRAQAHQRRGSIENQQQPLLA 127
AL RLP T GG Q P SN LV K AQ +
Sbjct: 63 DIEQALGRLPQVEGT---GGDVQ-P--SNELVRVLNLCDKLAQKRSDK------------ 104
Query: 128 VKIELEQLIISILDD-PSVSRVMREAGFSSTQVKSNVEQAVSLEICSQSTPVSSNKSKES 186
I E ++++L+D +++ +++ AG + + +E + ++ +
Sbjct: 105 -FISSELFVLAVLEDRGTLTDMLKAAGATVAIIDKAIETMRGGDKVDDQGAEDQRQALKK 163
Query: 187 NVLVLSQTASATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVV 244
+ L++ A K LDP+ R+E++ I+ L + K N V++GE +V
Sbjct: 164 FTIDLTERAEQGK-------LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIV 216
Query: 245 RGVIDKIEKGDVPEALRDVKCLPLSISSF--RHMNRVEVEQRVEEIKN 290
G+ +I G+VPE L+ + L L + S R E E+R++ + N
Sbjct: 217 EGLAQRIVNGEVPEGLKHKRVLSLDMGSLIAGAKYRGEFEERLKGVLN 264
Score = 42.4 bits (98), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 71/176 (40%), Gaps = 18/176 (10%)
Query: 607 ENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTM---RRKGKFKDHSEVKEETWLFFQ 663
+ L + L ++V Q + V ++N + + R+G R G F F
Sbjct: 557 DKLLRMEQDLHQRVIGQDEAVEAVSNAIRRSRAGLSDPNRPIGSF------------LFL 604
Query: 664 GVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIER 723
G K ++ K LA +F S + V I +S F + S + Y+
Sbjct: 605 GPTGVGKTELCKALATFLFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYL-- 662
Query: 724 FAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDAIVILS 779
EAV P+ V L+++VE+A + ++ GR+ G V + +VI++
Sbjct: 663 -TEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMT 717
>sp|Q71XF9|CLPB_LISMF Chaperone protein ClpB OS=Listeria monocytogenes serotype 4b
(strain F2365) GN=clpB PE=3 SV=1
Length = 866
Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 80/188 (42%), Gaps = 22/188 (11%)
Query: 598 VHKFKELNSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTM---RRKGKFKDHSEV 654
V K E E L L + L +KV Q D V +++ VL+ R+G R G F
Sbjct: 554 VTKLVEGEREKLLKLADELHQKVIGQDDAVQLVSDAVLRARAGIKDPKRPIGSF------ 607
Query: 655 KEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRD 714
F G K ++AK LA +F S ++ + I +S + + S
Sbjct: 608 ------IFLGPTGVGKTELAKALAFNMFDSEDHMIRIDMSEYMEKHSVS-----RLVGAP 656
Query: 715 EQSCSYIE--RFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLG 772
Y E + EAV NP+ + L++++E+A + ++ GRI S G +
Sbjct: 657 PGYVGYEEGGQLTEAVRRNPYSIVLLDEIEKAHPDVFNILLQVLDDGRITDSQGRLIDFK 716
Query: 773 DAIVILSC 780
+ ++I++
Sbjct: 717 NTVIIMTS 724
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 120/295 (40%), Gaps = 30/295 (10%)
Query: 10 QGLTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKAL 69
Q T + + A LA H ++ HV +L S R + + AL
Sbjct: 4 QKFTQQVQQTIADAQNLAIASEHQEIDVAHVFKVLLTESDFAKRVYDVAE----VDIDAL 59
Query: 70 ELCFNVALNRLPASTSTPMLGGHCQFPTISNALVAAFKRAQAHQRRGSIENQQQPLLAVK 129
+ AL ++P + + + G +S AL + A E +Q+ L
Sbjct: 60 QKTVEDALTKIPVVSGSGVNYGQA----MSQALFQLMRDA---------EKEQKQLDDDF 106
Query: 130 IELEQLIISILDDPS--VSRVMREAGFSSTQVKSNVEQAVSLEICSQSTPVSSNKSKESN 187
+ E LI++++D S ++ +++ S Q++ + L+I S N E N
Sbjct: 107 VSTEHLILAVMDQKSNPITMNLKKQHKSKKQIQEAI-----LKIRGGKKVTSQNA--EEN 159
Query: 188 VLVLSQTASATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVR 245
L++ LDP+ R+ ++ VI L K K N V++GE +V
Sbjct: 160 YEALTKYGRDLVAEVRSGKLDPVIGRDAEIRNVIRILSRKTKNNPVLIGEPGVGKTAIVE 219
Query: 246 GVIDKIEKGDVPEALRDVKCLPLSISSF--RHMNRVEVEQRVEEIKNLVRSCLGR 298
G+ +I + DVPE L+D + L I S R E E+R++ + V+ G+
Sbjct: 220 GLAQRIVRKDVPEGLKDKTIISLDIGSLIAGAKYRGEFEERLKAVLQEVKQSDGQ 274
>sp|Q87S63|CLPB_VIBPA Chaperone protein ClpB OS=Vibrio parahaemolyticus serotype O3:K6
(strain RIMD 2210633) GN=clpB PE=3 SV=1
Length = 857
Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 62/277 (22%), Positives = 119/277 (42%), Gaps = 32/277 (11%)
Query: 20 VKQAMTLARRRGHAQVTPLHVANTMLAASTGLLR--TACLQSHSHPLQCKALELCFNVAL 77
+ A +LA R H + P+H+ +L + +R L L+ K E+ L
Sbjct: 14 ISDAQSLALGRDHQYIEPVHLMVALLDQNGSPIRPLLTMLDVDVTHLRSKLGEM-----L 68
Query: 78 NRLPASTSTPMLGGHCQFPTISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIELEQLII 137
+RLP + +GG Q + L + A +R+ S + + LLA
Sbjct: 69 DRLPKVSG---IGGDVQLSSSMGTLFNLCDKV-AQKRQDSYISSEVFLLA---------- 114
Query: 138 SILDDPSVSRVMREAGFSSTQVKSNVEQAVSLEICSQSTPVSSNKSKESNVLVLSQTASA 197
++ D + ++++E G + +V +E+ + + ++ E + L++ A
Sbjct: 115 ALEDRGPLGQLLKEVGLTEQKVSQAIEKIRGGQKVNDPNAEELRQALEKFTIDLTERAEQ 174
Query: 198 TKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGD 255
K LDP+ R++++ I+ L + K N V++GE +V G+ +I +
Sbjct: 175 GK-------LDPVIGRDDEIRRTIQVLQRRTKNNPVIIGEPGVGKTAIVEGLAQRIVNNE 227
Query: 256 VPEALRDVKCLPLSISSF--RHMNRVEVEQRVEEIKN 290
VPE LR + L L + + R E E+R++ + N
Sbjct: 228 VPEGLRGRRVLSLDMGALVAGAKYRGEFEERLKSVLN 264
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 77/192 (40%), Gaps = 18/192 (9%)
Query: 598 VHKFKELNSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTM---RRKGKFKDHSEV 654
V K E E L + + L +V Q + V ++N + + R+G R G F
Sbjct: 548 VSKMLEAEKEKLLRMEDVLHNRVVGQSEAVAVVSNAIRRSRAGLSDPNRPIGSF------ 601
Query: 655 KEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRD 714
F G K ++ K LA +F S + V I +S F + +
Sbjct: 602 ------LFLGPTGVGKTELCKTLASFMFDSEDAMVRIDMSEFMEKHSVARLVGAPPGYVG 655
Query: 715 EQSCSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDA 774
+ Y+ EAV P+ V L+++VE+A + ++ GR+ G V +
Sbjct: 656 YEEGGYL---TEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNT 712
Query: 775 IVILSCESFSSR 786
+VI++ SSR
Sbjct: 713 VVIMTSNLGSSR 724
>sp|Q73K92|CLPB_TREDE Chaperone protein ClpB OS=Treponema denticola (strain ATCC 35405 /
CIP 103919 / DSM 14222) GN=clpB PE=3 SV=1
Length = 859
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/295 (22%), Positives = 127/295 (43%), Gaps = 30/295 (10%)
Query: 13 TAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALELC 72
T +A+ V++A +LA+R H+QV H+ +L G++ PL K
Sbjct: 7 TVKASEAVQEASSLAQRDDHSQVESEHLLYVLLEQEDGIV---------PPLVEKIGVSP 57
Query: 73 FNVALNRLPASTSTPMLGGHCQFPTISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIEL 132
++ + P + G IS L F A+ + + E +
Sbjct: 58 ESLLDDLDKMLDRKPRVTGQSAQTYISPLLAKVFANAEGYADKLKDEY---------VST 108
Query: 133 EQLIISILDDPS-VSRVMREAGFSSTQVKSNVEQAVSLEICSQSTPVSSNKSKESNVLVL 191
E L++++ + ++R G + + S +++ + P S+ +S E L
Sbjct: 109 EHLLLALSESKDETGELLRSRGINLKNLLSALKEIRGNNRVTSENPESTFRSLEKFCRDL 168
Query: 192 SQTASATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVID 249
+Q A K+ DP+ R+E++ V++ L + K N V++GE +V G+
Sbjct: 169 TQLAKNEKI-------DPVIGRDEEIRRVMQVLSRRTKNNPVLIGEPGVGKTAIVEGLAR 221
Query: 250 KIEKGDVPEALRDVKCLPLSISSF--RHMNRVEVEQRVEEIKNLVRSCLGRGIVL 302
+I GDVP++L+ + L L + + R E E+R++ + + V+ GR I+
Sbjct: 222 RIVSGDVPDSLKGKRLLSLDLGALVAGAKFRGEFEERLKAVISEVQKSEGRVILF 276
>sp|Q82SD8|CLPB_NITEU Chaperone protein ClpB OS=Nitrosomonas europaea (strain ATCC 19718
/ NBRC 14298) GN=clpB PE=3 SV=1
Length = 863
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 124/286 (43%), Gaps = 32/286 (11%)
Query: 23 AMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALELCFNVALNRLPA 82
A ++A + H + P H+ ++ G + T+ LQ + + L +L LP
Sbjct: 17 AQSMALGQDHPYIEPQHLLLALMQQDDGSI-TSLLQRAG--VNAQPLRQALTQSLKLLPK 73
Query: 83 STSTPMLGGHCQFP-TISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIELEQLIISILD 141
T GG ++N L K AQ +RG I E +++ L+
Sbjct: 74 VEGT---GGEINVSRDLANLLNLTDKEAQ---KRGD----------QYIASEMFLLAALE 117
Query: 142 DPS-VSRVMREAGFSSTQVKSNVEQAVSLEICSQSTPVSSNKSKESNVLVLSQTASATKV 200
D R++++ G + ++ V+ E + + S ++ + L L++ A + K
Sbjct: 118 DKGETGRLLKQYGATRAALEQAVDSVRGGEKVTDAEAEGSREALKKYTLDLTERARSGK- 176
Query: 201 SKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPE 258
LDP+ R++++ I+ L + K N V++GE +V G+ +I G+VPE
Sbjct: 177 ------LDPVIGRDDEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPE 230
Query: 259 ALRDVKCLPLSISSF--RHMNRVEVEQRVEEIKNLVRSCLGRGIVL 302
L++ + L L +++ R E E+R++ + + GR IV
Sbjct: 231 TLKNKRVLSLDMAALLAGAKYRGEFEERLKAVLKELAQDEGRTIVF 276
>sp|Q74FF1|CLPB_GEOSL Chaperone protein ClpB OS=Geobacter sulfurreducens (strain ATCC
51573 / DSM 12127 / PCA) GN=clpB PE=3 SV=1
Length = 865
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/283 (22%), Positives = 118/283 (41%), Gaps = 37/283 (13%)
Query: 29 RRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALELCFNVALNRLP---ASTS 85
R+G+ + P H+ ++L GL+ + P AL +V + RLP +T+
Sbjct: 24 RQGNGSIEPEHLLVSLLEQEGGLIAPIIQKVGGAP---AALRSAADVLVKRLPQVSGATA 80
Query: 86 TPMLGGHCQFPTISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIELEQLIISILDDP-- 143
L P ++ L AA + A + + E L++ D
Sbjct: 81 QAYLS-----PALNRILDAAQREADTMKDEF-------------VSTEHLLLGFFADRQC 122
Query: 144 SVSRVMREAGFSSTQVKSNVEQAVSLEICSQSTPVSSNKSKESNVLVLSQTASATKVSKP 203
+ +R + +AG S V + + + E + P + ++ L+ A K
Sbjct: 123 AAARALLDAGVSRDNVLAALMEIRGGERVTDQNPEDTYQALAKYARDLTDLARQGK---- 178
Query: 204 RVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALR 261
LDP+ R++++ V++ L + K N V++GE +V G+ +I GDVPE L+
Sbjct: 179 ---LDPVIGRDDEIRRVLQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVSGDVPETLK 235
Query: 262 DVKCLPLSISSF--RHMNRVEVEQRVEEIKNLVRSCLGRGIVL 302
D + + L + + R E E+R++ + V G+ I+
Sbjct: 236 DKRLVALDMGALIAGAKYRGEFEERLKAVIREVAKSEGKVILF 278
Score = 37.7 bits (86), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 72/187 (38%), Gaps = 22/187 (11%)
Query: 598 VHKFKELNSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTM---RRKGKFKDHSEV 654
V + E ++ L + + L +V Q + + +AN + + RSG R G F
Sbjct: 554 VSRMMEGEADKLVHMEDRLITRVVGQDEALVLVANAIRRARSGLSDPNRPIGSF------ 607
Query: 655 KEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSS--TRADSTEDSRNKRS 712
F G K + AK LA +F V I +S + T A
Sbjct: 608 ------LFLGPTGVGKTETAKALAEFLFNDDQAIVRIDMSEYQEKHTVARLIGAPPGYVG 661
Query: 713 RDEQSCSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLG 772
+E + EAV P+ + L +++E+A + ++ GR+ G V
Sbjct: 662 YEEGG-----QLTEAVRRRPYSIVLFDEIEKAHPEVFNVLLQVLDDGRLTDGQGRTVDFR 716
Query: 773 DAIVILS 779
+ ++I++
Sbjct: 717 NTVIIMT 723
>sp|Q8EBE6|CLPB_SHEON Chaperone protein ClpB OS=Shewanella oneidensis (strain MR-1)
GN=clpB PE=3 SV=1
Length = 857
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 76/185 (41%), Gaps = 18/185 (9%)
Query: 598 VHKFKELNSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTM---RRKGKFKDHSEV 654
V K E E L + AL ++V Q + V +AN + + R+G R G F
Sbjct: 548 VSKMLEGEREKLLQMEVALHERVIGQNEAVDAVANAIRRSRAGLADPNRPIGSF------ 601
Query: 655 KEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRD 714
F G K ++ K LAR +F S + V I +S F A S
Sbjct: 602 ------LFLGPTGVGKTELCKSLARFLFDSESALVRIDMSEFMEKHAVSRLVGAPPGYVG 655
Query: 715 EQSCSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDA 774
+ Y+ EAV P+ V L+++VE+A + ++ GR+ G V +
Sbjct: 656 YEEGGYL---TEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNT 712
Query: 775 IVILS 779
++I++
Sbjct: 713 VIIMT 717
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/280 (21%), Positives = 121/280 (43%), Gaps = 38/280 (13%)
Query: 20 VKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALELCFNVALNR 79
+ A +LA R H + PLH+ +L +G + Q+ ++ AL + L R
Sbjct: 14 ISDAQSLALGRDHQFIEPLHLMMALLNQDSGSIHPLLTQAG---IRVSALRSLLSQELER 70
Query: 80 LPASTSTPMLGGHCQFPTISNALVAAF----KRAQAHQRRGSIENQQQPLLAVKIELEQL 135
LP T GG Q +S L+ K AQ + + I E
Sbjct: 71 LPQVEGT---GGDVQ---LSQGLIRLLNLCDKLAQKRKDK-------------YISSELF 111
Query: 136 IISILDD-PSVSRVMREAGFSSTQVKSNVEQAVSLEICSQSTPVSSNKSKESNVLVLSQT 194
+++ L+ ++++ ++++G + ++ +EQ + ++ + + L++
Sbjct: 112 VLAALEGCDALAQCLKKSGATKELMEQTIEQVRGGQKVDDPNAEDQRQALKKFTVDLTER 171
Query: 195 ASATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIE 252
A K LDP+ R++++ I+ L + K N V++GE +V G+ +I
Sbjct: 172 AEQGK-------LDPVIGRDDEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIV 224
Query: 253 KGDVPEALRDVKCLPLSISSF--RHMNRVEVEQRVEEIKN 290
G+VPE +++ + L L + + R E E+R++ + N
Sbjct: 225 NGEVPEGIKNKRVLSLDMGALIAGAKYRGEFEERLKAVLN 264
>sp|Q7CQ01|CLPB_SALTY Chaperone protein ClpB OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=clpB PE=3 SV=1
Length = 857
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 125/285 (43%), Gaps = 32/285 (11%)
Query: 12 LTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALEL 71
LT + + A +LA + + PLH+ + +L G +R S + L
Sbjct: 6 LTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSIRPLL---TSAGINAGQLRT 62
Query: 72 CFNVALNRLPASTSTPMLGGHCQFPTISNALVAAFKR-AQAHQRRGSIENQQQPLLAVKI 130
+ AL+RLP T GG Q P S+ LV + Q+RG +N I
Sbjct: 63 AIDQALSRLPQVEGT---GGDVQ-P--SSELVRVLNLCDKLAQKRG--DN--------FI 106
Query: 131 ELEQLIISILDD-PSVSRVMREAGFSSTQVKSNVEQAVSLEICSQSTPVSSNKSKESNVL 189
E +++ L+ +++ +++ AG ++ + +EQ E + ++ + +
Sbjct: 107 SSELFVLAALESRGTLTDLLKSAGATTANITQAIEQMRGGESVNDQGAEDQRQALKKYTV 166
Query: 190 VLSQTASATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGV 247
L++ A K LDP+ R+E++ I+ L + K N V++GE +V G+
Sbjct: 167 DLTERAEQGK-------LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGL 219
Query: 248 IDKIEKGDVPEALRDVKCLPLSISSF--RHMNRVEVEQRVEEIKN 290
+I G+VPE L+ + L L + + R E E+R++ + N
Sbjct: 220 AQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLN 264
Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 73/185 (39%), Gaps = 18/185 (9%)
Query: 598 VHKFKELNSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTM---RRKGKFKDHSEV 654
V + E E L + L +V Q + V ++N + + R+G R G F
Sbjct: 548 VSRMLEGEREKLLRMEQELHSRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSF------ 601
Query: 655 KEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRD 714
F G K ++ K LA +F S + V I +S F + S
Sbjct: 602 ------LFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVG 655
Query: 715 EQSCSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDA 774
+ Y+ EAV P+ V L+++VE+A + ++ GR+ G V +
Sbjct: 656 YEEGGYL---TEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNT 712
Query: 775 IVILS 779
+VI++
Sbjct: 713 VVIMT 717
>sp|Q7AMH5|CLPB_SALTI Chaperone protein ClpB OS=Salmonella typhi GN=clpB PE=3 SV=1
Length = 857
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 125/285 (43%), Gaps = 32/285 (11%)
Query: 12 LTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALEL 71
LT + + A +LA + + PLH+ + +L G +R S + L
Sbjct: 6 LTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSIRPLL---TSAGINAGQLRT 62
Query: 72 CFNVALNRLPASTSTPMLGGHCQFPTISNALVAAFKR-AQAHQRRGSIENQQQPLLAVKI 130
+ AL+RLP T GG Q P S+ LV + Q+RG +N I
Sbjct: 63 AIDQALSRLPQVEGT---GGDVQ-P--SSELVRVLNLCDKLAQKRG--DN--------FI 106
Query: 131 ELEQLIISILDD-PSVSRVMREAGFSSTQVKSNVEQAVSLEICSQSTPVSSNKSKESNVL 189
E +++ L+ +++ +++ AG ++ + +EQ E + ++ + +
Sbjct: 107 SSELFVLAALESRGTLTDLLKSAGATTANITQAIEQMRGGESVNDQGAEDQRQALKKYTV 166
Query: 190 VLSQTASATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGV 247
L++ A K LDP+ R+E++ I+ L + K N V++GE +V G+
Sbjct: 167 DLTERAEQGK-------LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGL 219
Query: 248 IDKIEKGDVPEALRDVKCLPLSISSF--RHMNRVEVEQRVEEIKN 290
+I G+VPE L+ + L L + + R E E+R++ + N
Sbjct: 220 AQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLN 264
Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 73/185 (39%), Gaps = 18/185 (9%)
Query: 598 VHKFKELNSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTM---RRKGKFKDHSEV 654
V + E E L + L +V Q + V ++N + + R+G R G F
Sbjct: 548 VSRMLEGEREKLLRMEQELHSRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSF------ 601
Query: 655 KEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRD 714
F G K ++ K LA +F S + V I +S F + S
Sbjct: 602 ------LFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVG 655
Query: 715 EQSCSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDA 774
+ Y+ EAV P+ V L+++VE+A + ++ GR+ G V +
Sbjct: 656 YEEGGYL---TEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNT 712
Query: 775 IVILS 779
+VI++
Sbjct: 713 VVIMT 717
>sp|Q7CU92|CLPB_AGRT5 Chaperone protein ClpB OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=clpB PE=3 SV=2
Length = 874
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 127/294 (43%), Gaps = 32/294 (10%)
Query: 20 VKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALELCFNVALNR 79
++ A T A H Q +P HV +L G+ + ++ K L + AL +
Sbjct: 14 LQSAQTFALAENHQQFSPEHVLKVLLDDEQGMAASLIERAGG---DAKEARLANDAALAK 70
Query: 80 LPASTSTPMLGGHCQFPTISNALVAAFKRAQ--AHQRRGSIENQQQPLLAVKIELEQLII 137
LP + GG+ +++ L F A+ A + S ++ L A+ IE
Sbjct: 71 LPKVS-----GGNGGL-SLTAPLAKVFSTAEDLAKKAGDSFVTVERLLQALAIE------ 118
Query: 138 SILDDPSVSRVMREAGFSSTQVKSNVEQAVSLEICSQSTPVSSNKSKESNVLVLSQTASA 197
S S +++AG ++ + + +I T S+N E L + A
Sbjct: 119 ---SSASTSASLKKAGATAQALNQVIN-----DIRKGRTADSANA--EQGFDALKKYARD 168
Query: 198 TKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGD 255
LDP+ R++++ I+ L + K N V++GE + G+ +I GD
Sbjct: 169 LTEEAREGRLDPVIGRDDEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIAEGLALRIVNGD 228
Query: 256 VPEALRDVKCLPLSISSF--RHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLGDL 307
VPE+L+D K + L + + R E E+R++ + N V++ G GI+L + ++
Sbjct: 229 VPESLKDKKLMALDMGALIAGAKYRGEFEERLKAVLNEVQAENG-GIILFIDEM 281
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.127 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 294,007,145
Number of Sequences: 539616
Number of extensions: 11757171
Number of successful extensions: 37138
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 36164
Number of HSP's gapped (non-prelim): 777
length of query: 854
length of database: 191,569,459
effective HSP length: 126
effective length of query: 728
effective length of database: 123,577,843
effective search space: 89964669704
effective search space used: 89964669704
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)