Query 003038
Match_columns 854
No_of_seqs 415 out of 2880
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 15:48:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003038.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003038hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0542 clpA ATP-binding subun 100.0 4E-119 1E-123 1049.9 44.3 603 11-782 1-643 (786)
2 KOG1051 Chaperone HSP104 and r 100.0 9E-112 2E-116 999.2 50.2 681 1-790 1-718 (898)
3 TIGR03345 VI_ClpV1 type VI sec 100.0 1E-90 2.2E-95 844.7 45.3 655 12-783 1-719 (852)
4 CHL00095 clpC Clp protease ATP 100.0 1.4E-89 3.1E-94 838.5 47.4 616 8-783 1-662 (821)
5 TIGR03346 chaperone_ClpB ATP-d 100.0 1.6E-85 3.4E-90 804.9 49.2 656 12-782 1-717 (852)
6 PRK10865 protein disaggregatio 100.0 2.7E-85 5.9E-90 799.6 45.5 657 7-782 1-720 (857)
7 TIGR02639 ClpA ATP-dependent C 100.0 5.4E-82 1.2E-86 764.0 45.0 569 12-783 1-604 (731)
8 PRK11034 clpA ATP-dependent Cl 100.0 4.9E-80 1.1E-84 738.1 43.9 568 12-782 2-607 (758)
9 PF07724 AAA_2: AAA domain (Cd 99.9 1.6E-23 3.4E-28 210.7 10.3 116 655-783 1-130 (171)
10 KOG0733 Nuclear AAA ATPase (VC 99.9 9.9E-22 2.2E-26 220.5 22.4 134 226-383 222-364 (802)
11 TIGR01243 CDC48 AAA family ATP 99.8 4.3E-17 9.2E-22 199.1 26.0 135 226-383 211-347 (733)
12 TIGR00382 clpX endopeptidase C 99.8 5.4E-18 1.2E-22 191.2 14.2 151 609-782 68-247 (413)
13 KOG0730 AAA+-type ATPase [Post 99.7 3.2E-17 7E-22 187.4 19.2 134 226-383 217-352 (693)
14 PRK05342 clpX ATP-dependent pr 99.6 8.7E-16 1.9E-20 174.2 13.2 152 609-782 62-239 (412)
15 KOG2170 ATPase of the AAA+ sup 99.6 1.3E-14 2.8E-19 152.9 10.8 148 608-784 72-226 (344)
16 KOG0736 Peroxisome assembly fa 99.5 1.6E-12 3.6E-17 150.5 21.0 155 205-386 399-567 (953)
17 TIGR00763 lon ATP-dependent pr 99.4 8.9E-13 1.9E-17 161.9 13.4 160 606-786 308-476 (775)
18 KOG0736 Peroxisome assembly fa 99.4 5.4E-13 1.2E-17 154.4 10.0 144 212-377 681-837 (953)
19 PF05496 RuvB_N: Holliday junc 99.4 7.8E-12 1.7E-16 129.1 15.1 107 618-762 24-131 (233)
20 KOG0989 Replication factor C, 99.4 1.2E-12 2.5E-17 138.7 9.0 136 619-795 37-182 (346)
21 KOG0734 AAA+-type ATPase conta 99.4 1.7E-12 3.7E-17 144.9 10.1 147 212-384 313-473 (752)
22 COG2812 DnaX DNA polymerase II 99.4 4E-13 8.6E-18 154.4 4.6 175 618-823 16-228 (515)
23 KOG0741 AAA+-type ATPase [Post 99.3 3.8E-11 8.3E-16 134.2 18.1 122 218-357 247-380 (744)
24 PRK07003 DNA polymerase III su 99.3 1.1E-11 2.4E-16 146.4 13.8 137 618-784 16-160 (830)
25 PRK12323 DNA polymerase III su 99.3 4.9E-12 1.1E-16 147.7 10.5 148 618-794 16-176 (700)
26 COG1222 RPT1 ATP-dependent 26S 99.3 7.1E-12 1.5E-16 135.3 10.6 139 226-386 184-326 (406)
27 KOG0730 AAA+-type ATPase [Post 99.3 5.6E-12 1.2E-16 144.9 9.0 139 225-388 466-608 (693)
28 PRK07940 DNA polymerase III su 99.3 1.2E-11 2.6E-16 139.9 10.5 145 618-783 5-157 (394)
29 COG2256 MGS1 ATPase related to 99.3 1.2E-11 2.5E-16 135.6 9.3 130 213-388 37-172 (436)
30 PRK05201 hslU ATP-dependent pr 99.3 2.2E-11 4.7E-16 136.4 11.7 81 609-698 6-88 (443)
31 PRK07994 DNA polymerase III su 99.3 3.2E-11 6.8E-16 143.1 13.0 138 618-784 16-160 (647)
32 PRK14956 DNA polymerase III su 99.2 2.9E-11 6.4E-16 138.2 11.6 148 618-795 18-174 (484)
33 PRK14949 DNA polymerase III su 99.2 2.9E-11 6.3E-16 145.4 12.1 138 618-784 16-160 (944)
34 PF00158 Sigma54_activat: Sigm 99.2 2E-11 4.4E-16 122.7 8.0 139 620-781 1-142 (168)
35 PF13177 DNA_pol3_delta2: DNA 99.2 2.8E-11 6E-16 121.1 9.0 131 622-782 1-141 (162)
36 KOG0735 AAA+-type ATPase [Post 99.2 6.6E-10 1.4E-14 128.2 20.8 119 226-354 430-549 (952)
37 KOG0738 AAA+-type ATPase [Post 99.2 2.9E-11 6.2E-16 131.3 8.9 136 224-383 242-383 (491)
38 PRK14952 DNA polymerase III su 99.2 6.2E-11 1.3E-15 139.8 12.1 137 618-783 13-158 (584)
39 PRK14958 DNA polymerase III su 99.2 9.6E-11 2.1E-15 137.0 13.4 136 618-782 16-158 (509)
40 TIGR02881 spore_V_K stage V sp 99.2 3.3E-11 7.1E-16 129.8 8.2 139 226-386 41-182 (261)
41 COG0466 Lon ATP-dependent Lon 99.2 7.3E-11 1.6E-15 137.0 11.2 159 605-788 310-481 (782)
42 PRK07764 DNA polymerase III su 99.2 9.9E-11 2.2E-15 143.0 13.0 140 618-786 15-163 (824)
43 CHL00181 cbbX CbbX; Provisiona 99.2 1.2E-10 2.7E-15 126.9 12.0 139 605-781 10-169 (287)
44 KOG0733 Nuclear AAA ATPase (VC 99.2 7.3E-11 1.6E-15 134.0 10.2 127 226-375 544-671 (802)
45 PRK14957 DNA polymerase III su 99.2 1.2E-10 2.7E-15 136.1 12.6 135 618-782 16-158 (546)
46 TIGR03689 pup_AAA proteasome A 99.2 2.4E-10 5.3E-15 132.4 14.2 153 226-388 215-371 (512)
47 PRK14951 DNA polymerase III su 99.2 1.2E-10 2.6E-15 137.9 11.9 137 618-782 16-163 (618)
48 PRK13531 regulatory ATPase Rav 99.2 1.8E-10 4E-15 131.4 12.4 147 606-783 8-157 (498)
49 PRK14960 DNA polymerase III su 99.2 1.3E-10 2.8E-15 136.4 11.4 135 618-782 15-157 (702)
50 PRK14964 DNA polymerase III su 99.1 2.6E-10 5.7E-15 131.7 13.7 138 618-785 13-158 (491)
51 PLN03025 replication factor C 99.1 1.8E-10 3.9E-15 127.7 11.7 116 619-782 14-138 (319)
52 PF00004 AAA: ATPase family as 99.1 2.7E-10 5.8E-15 108.4 11.3 118 230-369 1-120 (132)
53 PF06309 Torsin: Torsin; Inte 99.1 1.4E-10 3E-15 109.6 8.9 107 608-738 15-127 (127)
54 PRK14961 DNA polymerase III su 99.1 2.2E-10 4.7E-15 129.2 12.1 136 618-783 16-159 (363)
55 PRK14965 DNA polymerase III su 99.1 1.6E-10 3.5E-15 137.3 11.3 136 618-783 16-159 (576)
56 KOG0735 AAA+-type ATPase [Post 99.1 1.4E-10 3E-15 133.6 10.1 127 225-374 699-826 (952)
57 KOG0739 AAA+-type ATPase [Post 99.1 1.5E-10 3.3E-15 121.7 9.6 129 227-383 166-300 (439)
58 KOG2035 Replication factor C, 99.1 1.7E-10 3.6E-15 120.7 9.3 137 657-825 34-188 (351)
59 COG2256 MGS1 ATPase related to 99.1 1.8E-10 3.8E-15 126.5 9.8 101 619-762 25-134 (436)
60 TIGR00390 hslU ATP-dependent p 99.1 3.3E-10 7.2E-15 126.9 12.2 80 610-698 4-85 (441)
61 PLN00020 ribulose bisphosphate 99.1 2.6E-10 5.6E-15 125.2 10.7 129 225-374 146-291 (413)
62 TIGR02880 cbbX_cfxQ probable R 99.1 5.1E-10 1.1E-14 122.0 12.5 139 605-781 9-168 (284)
63 PRK03992 proteasome-activating 99.1 4.9E-10 1.1E-14 127.4 12.9 155 211-388 136-308 (389)
64 TIGR01241 FtsH_fam ATP-depende 99.1 3.8E-10 8.3E-15 132.4 11.9 154 213-386 65-229 (495)
65 CHL00195 ycf46 Ycf46; Provisio 99.1 2.4E-10 5.2E-15 132.6 10.0 134 226-384 258-394 (489)
66 PRK10787 DNA-binding ATP-depen 99.1 5.2E-10 1.1E-14 136.8 13.4 157 605-783 309-475 (784)
67 PRK05563 DNA polymerase III su 99.1 5.2E-10 1.1E-14 132.5 12.9 135 618-782 16-158 (559)
68 PRK08691 DNA polymerase III su 99.1 4.6E-10 1E-14 132.9 11.3 136 618-782 16-158 (709)
69 COG0464 SpoVK ATPases of the A 99.1 4.7E-10 1E-14 131.7 11.3 153 212-388 251-416 (494)
70 PRK14959 DNA polymerase III su 99.1 7.5E-10 1.6E-14 130.5 12.7 135 618-782 16-158 (624)
71 PRK09111 DNA polymerase III su 99.1 7.1E-10 1.5E-14 131.6 12.4 139 618-784 24-173 (598)
72 COG1223 Predicted ATPase (AAA+ 99.1 5.3E-10 1.1E-14 115.9 9.5 140 204-370 117-273 (368)
73 CHL00181 cbbX CbbX; Provisiona 99.1 5.1E-10 1.1E-14 122.0 10.1 139 227-386 59-200 (287)
74 PRK14969 DNA polymerase III su 99.0 1.2E-09 2.6E-14 128.5 13.7 134 618-782 16-158 (527)
75 COG1219 ClpX ATP-dependent pro 99.0 4.7E-10 1E-14 119.3 8.9 156 610-790 53-243 (408)
76 COG0470 HolB ATPase involved i 99.0 1.3E-09 2.8E-14 120.3 12.9 137 619-822 2-167 (325)
77 PF07728 AAA_5: AAA domain (dy 99.0 1.6E-10 3.6E-15 111.9 5.0 114 659-784 1-125 (139)
78 PRK14955 DNA polymerase III su 99.0 1.4E-09 2.9E-14 124.2 13.2 137 618-783 16-167 (397)
79 PRK07471 DNA polymerase III su 99.0 7.2E-10 1.6E-14 124.6 10.7 137 618-782 19-180 (365)
80 PRK06645 DNA polymerase III su 99.0 1.3E-09 2.9E-14 126.8 13.2 136 618-782 21-167 (507)
81 CHL00176 ftsH cell division pr 99.0 9.2E-10 2E-14 131.5 11.7 152 212-386 192-357 (638)
82 COG0464 SpoVK ATPases of the A 99.0 1.5E-08 3.3E-13 119.0 21.4 127 219-370 10-137 (494)
83 TIGR02880 cbbX_cfxQ probable R 99.0 8.8E-10 1.9E-14 120.1 10.1 138 227-384 58-197 (284)
84 COG0714 MoxR-like ATPases [Gen 99.0 1.3E-09 2.8E-14 121.4 11.3 139 608-781 14-162 (329)
85 PRK14954 DNA polymerase III su 99.0 1.7E-09 3.8E-14 128.5 13.1 137 618-783 16-167 (620)
86 PRK14963 DNA polymerase III su 99.0 2.4E-09 5.1E-14 125.1 13.9 134 619-782 15-155 (504)
87 PRK06305 DNA polymerase III su 99.0 1.4E-09 3.1E-14 125.7 11.3 131 618-783 17-161 (451)
88 TIGR01243 CDC48 AAA family ATP 99.0 1.5E-09 3.3E-14 133.2 12.0 140 225-386 485-626 (733)
89 PRK14962 DNA polymerase III su 99.0 2.2E-09 4.7E-14 124.5 12.6 134 618-781 14-155 (472)
90 PRK07399 DNA polymerase III su 99.0 1.6E-09 3.4E-14 119.6 10.8 133 617-783 3-163 (314)
91 TIGR02881 spore_V_K stage V sp 99.0 3.1E-09 6.8E-14 114.5 12.8 114 619-759 7-140 (261)
92 PRK08451 DNA polymerase III su 99.0 3.4E-09 7.4E-14 123.6 13.9 135 618-782 14-156 (535)
93 PRK05564 DNA polymerase III su 99.0 1.9E-09 4.1E-14 119.2 10.7 125 618-784 4-134 (313)
94 COG1222 RPT1 ATP-dependent 26S 99.0 3.2E-09 7E-14 115.0 12.0 146 619-799 152-318 (406)
95 PTZ00454 26S protease regulato 99.0 2.2E-09 4.8E-14 122.0 11.3 141 226-386 178-320 (398)
96 PRK07133 DNA polymerase III su 99.0 3.8E-09 8.3E-14 126.3 13.5 145 618-794 18-170 (725)
97 PRK14971 DNA polymerase III su 99.0 3.1E-09 6.7E-14 126.9 12.6 135 618-781 17-159 (614)
98 PRK06871 DNA polymerase III su 99.0 2.1E-09 4.6E-14 118.6 10.3 146 620-794 4-159 (325)
99 PRK09112 DNA polymerase III su 99.0 2.1E-09 4.6E-14 120.2 10.3 137 618-782 23-180 (351)
100 PRK05896 DNA polymerase III su 99.0 4.6E-09 1E-13 123.3 13.2 140 618-786 16-162 (605)
101 KOG0731 AAA+-type ATPase conta 99.0 2E-09 4.4E-14 127.6 10.3 153 211-386 319-486 (774)
102 KOG0745 Putative ATP-dependent 98.9 3.7E-09 8.1E-14 116.4 11.2 165 608-793 135-375 (564)
103 KOG2004 Mitochondrial ATP-depe 98.9 2.8E-09 6E-14 123.4 10.6 157 606-786 399-567 (906)
104 TIGR02640 gas_vesic_GvpN gas v 98.9 5.7E-09 1.2E-13 112.5 12.2 109 659-782 23-160 (262)
105 PRK08058 DNA polymerase III su 98.9 2E-09 4.3E-14 119.8 8.9 136 618-782 5-149 (329)
106 PRK08769 DNA polymerase III su 98.9 2.9E-09 6.4E-14 117.3 10.1 132 619-782 5-152 (319)
107 PTZ00361 26 proteosome regulat 98.9 3.6E-09 7.9E-14 121.1 11.1 141 226-386 216-358 (438)
108 PRK14953 DNA polymerase III su 98.9 6.7E-09 1.5E-13 120.9 13.4 132 618-784 16-160 (486)
109 TIGR02902 spore_lonB ATP-depen 98.9 6.8E-09 1.5E-13 122.5 13.3 121 619-762 66-205 (531)
110 PRK06647 DNA polymerase III su 98.9 6.9E-09 1.5E-13 122.7 13.2 136 618-783 16-159 (563)
111 PRK06090 DNA polymerase III su 98.9 3.8E-09 8.3E-14 116.3 10.0 147 619-795 4-161 (319)
112 TIGR01242 26Sp45 26S proteasom 98.9 7.1E-09 1.5E-13 117.1 12.4 155 211-388 127-299 (364)
113 PF05496 RuvB_N: Holliday junc 98.9 6.7E-10 1.5E-14 114.8 3.7 86 207-312 23-116 (233)
114 TIGR01817 nifA Nif-specific re 98.9 5.5E-09 1.2E-13 123.9 11.8 143 617-782 195-340 (534)
115 PF07726 AAA_3: ATPase family 98.9 3.7E-09 8E-14 100.3 8.1 109 659-786 1-116 (131)
116 PRK07993 DNA polymerase III su 98.9 3.1E-09 6.8E-14 118.2 8.8 148 619-795 3-161 (334)
117 CHL00206 ycf2 Ycf2; Provisiona 98.9 3.4E-09 7.3E-14 134.0 9.7 128 225-381 1628-1803(2281)
118 PRK14950 DNA polymerase III su 98.9 9.6E-09 2.1E-13 122.7 13.2 140 618-786 16-163 (585)
119 TIGR02397 dnaX_nterm DNA polym 98.9 1.5E-08 3.2E-13 113.7 13.8 136 618-783 14-157 (355)
120 TIGR02974 phageshock_pspF psp 98.9 6E-09 1.3E-13 115.9 10.4 139 620-781 1-142 (329)
121 KOG0737 AAA+-type ATPase [Post 98.9 3.8E-09 8.2E-14 115.1 8.2 113 226-355 126-240 (386)
122 PF00004 AAA: ATPase family as 98.9 7E-09 1.5E-13 98.6 9.1 101 660-784 1-113 (132)
123 PRK05707 DNA polymerase III su 98.9 5.2E-09 1.1E-13 116.1 9.4 132 620-783 5-146 (328)
124 PRK14948 DNA polymerase III su 98.9 1.4E-08 3E-13 121.4 13.6 137 618-782 16-160 (620)
125 COG1223 Predicted ATPase (AAA+ 98.8 9.8E-09 2.1E-13 106.6 8.9 117 614-757 117-247 (368)
126 PRK03992 proteasome-activating 98.8 1.9E-08 4.2E-13 114.5 12.2 135 619-788 132-285 (389)
127 PRK12402 replication factor C 98.8 3E-08 6.5E-13 110.3 13.4 135 618-781 15-163 (337)
128 COG2255 RuvB Holliday junction 98.8 1.9E-08 4.1E-13 106.2 10.9 107 618-762 26-133 (332)
129 COG0465 HflB ATP-dependent Zn 98.8 9.6E-09 2.1E-13 120.0 9.6 152 212-386 159-324 (596)
130 KOG0727 26S proteasome regulat 98.8 2.8E-08 6E-13 102.7 11.5 113 659-793 191-314 (408)
131 PRK10733 hflB ATP-dependent me 98.8 2.1E-08 4.5E-13 121.0 12.3 136 226-384 184-324 (644)
132 PRK14970 DNA polymerase III su 98.8 3.2E-08 6.9E-13 111.9 12.8 117 618-781 17-146 (367)
133 PRK13342 recombination factor 98.8 2.4E-08 5.1E-13 114.7 11.1 106 619-761 13-121 (413)
134 cd00009 AAA The AAA+ (ATPases 98.8 4.8E-08 1E-12 93.2 11.5 129 621-784 1-131 (151)
135 PRK05022 anaerobic nitric oxid 98.8 3.1E-08 6.7E-13 116.7 12.0 142 618-782 187-331 (509)
136 KOG0740 AAA+-type ATPase [Post 98.8 1.6E-08 3.4E-13 113.8 8.8 127 226-377 185-314 (428)
137 KOG0727 26S proteasome regulat 98.8 1.6E-08 3.4E-13 104.5 8.0 143 205-370 158-313 (408)
138 COG2204 AtoC Response regulato 98.8 1.7E-08 3.8E-13 115.0 9.2 139 616-782 139-285 (464)
139 KOG0652 26S proteasome regulat 98.8 3E-08 6.5E-13 102.9 10.0 143 225-386 203-346 (424)
140 PRK06964 DNA polymerase III su 98.8 2E-08 4.4E-13 111.6 9.5 145 620-794 3-184 (342)
141 COG3604 FhlA Transcriptional r 98.7 3.2E-08 7E-13 111.5 10.5 135 619-781 224-366 (550)
142 KOG2028 ATPase related to the 98.7 1.5E-08 3.3E-13 109.4 7.4 121 224-380 159-284 (554)
143 CHL00195 ycf46 Ycf46; Provisio 98.7 5E-08 1.1E-12 113.4 12.3 102 659-787 261-374 (489)
144 PRK11608 pspF phage shock prot 98.7 3.5E-08 7.6E-13 109.8 10.4 141 618-781 6-149 (326)
145 PRK15424 propionate catabolism 98.7 3E-08 6.6E-13 116.4 10.1 135 619-781 220-371 (538)
146 PHA02244 ATPase-like protein 98.7 1.5E-07 3.3E-12 104.4 14.8 110 659-783 121-231 (383)
147 KOG0728 26S proteasome regulat 98.7 9.5E-08 2.1E-12 98.7 12.1 143 222-386 176-322 (404)
148 TIGR00635 ruvB Holliday juncti 98.7 9.9E-08 2.1E-12 104.9 13.2 106 618-761 4-110 (305)
149 PRK00080 ruvB Holliday junctio 98.7 1.1E-07 2.5E-12 105.8 13.7 128 618-782 25-159 (328)
150 PRK11388 DNA-binding transcrip 98.7 3.1E-08 6.8E-13 119.9 9.4 142 618-782 325-466 (638)
151 TIGR01650 PD_CobS cobaltochela 98.7 8.9E-08 1.9E-12 105.1 11.9 121 659-786 66-191 (327)
152 KOG0726 26S proteasome regulat 98.7 2.5E-08 5.4E-13 105.0 6.8 127 223-370 215-343 (440)
153 COG2255 RuvB Holliday junction 98.7 1.7E-08 3.6E-13 106.6 5.2 121 210-357 29-162 (332)
154 PHA02544 44 clamp loader, smal 98.7 1.3E-07 2.8E-12 104.6 12.4 116 618-783 21-141 (316)
155 KOG2028 ATPase related to the 98.7 2.6E-08 5.7E-13 107.6 6.6 90 657-762 162-252 (554)
156 PRK04195 replication factor C 98.7 1.6E-07 3.4E-12 110.1 13.7 117 619-783 15-140 (482)
157 TIGR02329 propionate_PrpR prop 98.7 5.4E-08 1.2E-12 114.3 9.8 135 619-781 213-356 (526)
158 PRK15429 formate hydrogenlyase 98.7 1.6E-07 3.4E-12 114.8 14.1 141 619-782 377-520 (686)
159 KOG0729 26S proteasome regulat 98.7 6.7E-08 1.4E-12 100.6 9.1 138 211-370 182-335 (435)
160 PRK10820 DNA-binding transcrip 98.7 5.8E-08 1.3E-12 114.6 9.9 142 617-781 203-347 (520)
161 PF02861 Clp_N: Clp amino term 98.7 4.5E-08 9.8E-13 78.8 6.1 52 23-77 1-52 (53)
162 TIGR00678 holB DNA polymerase 98.7 1.3E-07 2.7E-12 96.8 10.6 116 656-783 13-136 (188)
163 PTZ00454 26S protease regulato 98.6 1.3E-07 2.8E-12 107.6 11.6 134 619-787 146-298 (398)
164 PRK08699 DNA polymerase III su 98.6 5.1E-08 1.1E-12 108.2 7.9 134 620-783 3-153 (325)
165 PRK11331 5-methylcytosine-spec 98.6 1.7E-07 3.7E-12 106.6 11.9 142 615-785 173-337 (459)
166 PF01078 Mg_chelatase: Magnesi 98.6 9.8E-08 2.1E-12 98.2 8.8 141 618-782 3-158 (206)
167 COG1221 PspF Transcriptional r 98.6 6.2E-08 1.3E-12 108.8 7.9 137 618-782 78-223 (403)
168 PRK00440 rfc replication facto 98.6 2.7E-07 5.9E-12 101.7 13.0 115 620-782 19-141 (319)
169 PRK05917 DNA polymerase III su 98.6 1.7E-07 3.7E-12 101.6 11.0 118 657-794 19-147 (290)
170 KOG0651 26S proteasome regulat 98.6 1.1E-07 2.4E-12 101.3 9.0 121 229-371 168-291 (388)
171 TIGR01242 26Sp45 26S proteasom 98.6 1.5E-07 3.2E-12 106.4 10.1 142 618-786 122-274 (364)
172 KOG0991 Replication factor C, 98.6 1.3E-07 2.9E-12 97.0 8.6 119 618-784 27-154 (333)
173 TIGR01241 FtsH_fam ATP-depende 98.6 1.1E-07 2.4E-12 111.7 9.2 138 619-787 56-207 (495)
174 PRK10923 glnG nitrogen regulat 98.5 1.9E-07 4.2E-12 108.9 9.5 140 619-781 139-281 (469)
175 smart00763 AAA_PrkA PrkA AAA d 98.5 5.9E-07 1.3E-11 99.7 12.5 51 619-681 52-102 (361)
176 PRK13342 recombination factor 98.5 3.9E-07 8.4E-12 104.8 11.3 124 218-385 27-154 (413)
177 PRK07276 DNA polymerase III su 98.5 3.8E-07 8.2E-12 99.2 10.6 142 622-794 6-156 (290)
178 PRK13407 bchI magnesium chelat 98.5 2.4E-07 5.2E-12 102.9 9.1 143 618-782 8-180 (334)
179 cd00009 AAA The AAA+ (ATPases 98.5 7.1E-07 1.5E-11 85.1 11.2 91 211-310 3-96 (151)
180 PRK13341 recombination factor 98.5 3.8E-07 8.2E-12 110.7 11.4 107 619-762 29-139 (725)
181 KOG0732 AAA+-type ATPase conta 98.5 1.2E-07 2.6E-12 115.6 6.8 128 226-371 298-426 (1080)
182 PTZ00112 origin recognition co 98.5 6.8E-07 1.5E-11 107.0 12.8 154 211-383 760-937 (1164)
183 COG3829 RocR Transcriptional r 98.5 2.2E-07 4.8E-12 106.1 8.4 137 618-782 245-390 (560)
184 TIGR03689 pup_AAA proteasome A 98.5 5.2E-07 1.1E-11 105.0 11.6 132 619-789 183-349 (512)
185 PRK00411 cdc6 cell division co 98.5 7.4E-07 1.6E-11 101.5 12.4 152 211-384 35-209 (394)
186 PTZ00361 26 proteosome regulat 98.5 3.4E-07 7.5E-12 105.0 9.6 136 619-789 184-338 (438)
187 TIGR02442 Cob-chelat-sub cobal 98.5 3.9E-07 8.4E-12 110.0 9.7 129 618-782 4-178 (633)
188 TIGR02639 ClpA ATP-dependent C 98.5 5.5E-07 1.2E-11 110.6 10.9 111 618-762 182-313 (731)
189 CHL00176 ftsH cell division pr 98.5 5.7E-07 1.2E-11 107.9 10.6 136 619-785 184-333 (638)
190 TIGR02928 orc1/cdc6 family rep 98.4 1.9E-06 4.1E-11 97.2 13.9 153 211-383 20-200 (365)
191 PRK11361 acetoacetate metaboli 98.4 6.6E-07 1.4E-11 103.9 10.5 140 619-781 144-286 (457)
192 PRK05818 DNA polymerase III su 98.4 4.8E-07 1E-11 96.3 8.4 126 656-795 6-141 (261)
193 TIGR03420 DnaA_homol_Hda DnaA 98.4 5.8E-07 1.3E-11 94.2 8.9 79 657-758 38-118 (226)
194 smart00382 AAA ATPases associa 98.4 6.5E-07 1.4E-11 84.4 8.0 115 658-782 3-125 (148)
195 TIGR02903 spore_lon_C ATP-depe 98.4 1.6E-06 3.5E-11 104.2 12.6 120 619-762 155-295 (615)
196 PLN00020 ribulose bisphosphate 98.4 1.1E-06 2.3E-11 97.2 10.1 111 655-789 146-284 (413)
197 TIGR02915 PEP_resp_reg putativ 98.4 7.5E-07 1.6E-11 103.2 9.5 140 619-781 140-282 (445)
198 PF14532 Sigma54_activ_2: Sigm 98.4 6.7E-07 1.5E-11 86.9 7.6 108 621-781 1-108 (138)
199 PRK04132 replication factor C 98.4 7.5E-07 1.6E-11 108.8 9.6 96 659-783 566-670 (846)
200 KOG0738 AAA+-type ATPase [Post 98.4 1.6E-06 3.5E-11 95.0 10.5 124 620-781 214-359 (491)
201 CHL00081 chlI Mg-protoporyphyr 98.4 1.5E-06 3.2E-11 97.0 10.4 141 618-782 17-196 (350)
202 TIGR02030 BchI-ChlI magnesium 98.4 8E-07 1.7E-11 98.9 8.1 145 618-781 4-182 (337)
203 PRK13341 recombination factor 98.4 2.3E-06 4.9E-11 104.1 12.4 127 217-383 42-169 (725)
204 PTZ00111 DNA replication licen 98.4 2.7E-06 5.8E-11 103.7 12.9 159 607-782 439-609 (915)
205 TIGR01818 ntrC nitrogen regula 98.3 1.2E-06 2.6E-11 102.0 9.6 140 619-781 135-277 (463)
206 TIGR03345 VI_ClpV1 type VI sec 98.3 2E-06 4.4E-11 106.7 11.9 111 618-762 187-318 (852)
207 PRK11331 5-methylcytosine-spec 98.3 1.1E-06 2.3E-11 100.2 8.4 95 211-310 180-284 (459)
208 PRK10865 protein disaggregatio 98.3 1.6E-06 3.5E-11 107.8 10.0 110 619-762 179-309 (857)
209 PRK15115 response regulator Gl 98.3 2E-06 4.3E-11 99.7 9.5 117 658-781 158-277 (444)
210 TIGR02640 gas_vesic_GvpN gas v 98.3 2.9E-06 6.3E-11 91.6 10.0 136 213-383 9-186 (262)
211 TIGR00368 Mg chelatase-related 98.3 4.7E-06 1E-10 97.5 12.3 140 618-782 192-347 (499)
212 smart00350 MCM minichromosome 98.3 3.8E-06 8.2E-11 99.1 11.6 157 607-783 192-353 (509)
213 KOG0731 AAA+-type ATPase conta 98.3 2.2E-06 4.7E-11 102.3 9.5 142 618-790 311-467 (774)
214 TIGR00763 lon ATP-dependent pr 98.3 2E-06 4.3E-11 106.4 9.2 126 227-385 347-495 (775)
215 PRK08903 DnaA regulatory inact 98.3 3.5E-06 7.7E-11 88.7 9.8 74 658-758 43-116 (227)
216 PRK06893 DNA replication initi 98.3 3.5E-06 7.5E-11 89.2 9.5 93 658-782 40-134 (229)
217 CHL00095 clpC Clp protease ATP 98.2 3.6E-06 7.8E-11 104.7 10.7 111 618-762 179-309 (821)
218 PRK08084 DNA replication initi 98.2 6.8E-06 1.5E-10 87.3 10.3 80 658-760 46-131 (235)
219 COG1220 HslU ATP-dependent pro 98.2 2.5E-06 5.3E-11 92.1 6.8 80 610-698 7-88 (444)
220 PF05621 TniB: Bacterial TniB 98.2 9.9E-06 2.1E-10 87.8 11.5 146 215-381 46-212 (302)
221 PRK12377 putative replication 98.2 7.4E-06 1.6E-10 87.5 10.4 88 658-758 102-191 (248)
222 TIGR02928 orc1/cdc6 family rep 98.2 9.7E-06 2.1E-10 91.4 12.0 145 618-783 15-175 (365)
223 KOG0734 AAA+-type ATPase conta 98.2 1E-05 2.2E-10 91.7 11.6 101 618-744 304-408 (752)
224 PRK08084 DNA replication initi 98.2 5.6E-06 1.2E-10 87.9 9.3 122 224-384 42-169 (235)
225 PF13191 AAA_16: AAA ATPase do 98.2 2.6E-06 5.7E-11 85.9 6.0 44 211-254 5-51 (185)
226 PF05673 DUF815: Protein of un 98.2 6.8E-06 1.5E-10 86.5 9.0 77 215-308 40-116 (249)
227 KOG0739 AAA+-type ATPase [Post 98.2 3.5E-06 7.6E-11 89.4 6.9 93 620-744 135-237 (439)
228 PRK11034 clpA ATP-dependent Cl 98.2 5.1E-06 1.1E-10 101.5 9.3 117 619-762 187-317 (758)
229 TIGR03346 chaperone_ClpB ATP-d 98.1 7.2E-06 1.6E-10 102.4 10.6 111 618-762 173-304 (852)
230 KOG0651 26S proteasome regulat 98.1 7.1E-06 1.5E-10 87.8 8.9 114 655-790 164-288 (388)
231 PF05673 DUF815: Protein of un 98.1 2.4E-05 5.1E-10 82.5 12.4 121 619-782 28-150 (249)
232 PRK05342 clpX ATP-dependent pr 98.1 5.4E-06 1.2E-10 94.8 8.3 73 226-310 107-185 (412)
233 CHL00206 ycf2 Ycf2; Provisiona 98.1 6.5E-06 1.4E-10 105.2 9.5 124 656-789 1629-1788(2281)
234 PRK08116 hypothetical protein; 98.1 1.1E-05 2.4E-10 87.4 9.7 103 659-782 116-220 (268)
235 PF07728 AAA_5: AAA domain (dy 98.1 8.1E-07 1.8E-11 86.0 0.3 68 229-310 1-77 (139)
236 KOG0990 Replication factor C, 98.1 3.6E-06 7.8E-11 90.5 5.2 129 619-795 42-184 (360)
237 PRK07132 DNA polymerase III su 98.1 3.4E-05 7.4E-10 84.6 13.0 105 657-784 18-131 (299)
238 KOG0728 26S proteasome regulat 98.1 2.7E-05 5.7E-10 81.0 11.2 114 660-795 184-308 (404)
239 PRK10365 transcriptional regul 98.1 9.9E-06 2.2E-10 93.7 9.3 139 620-781 141-282 (441)
240 KOG0729 26S proteasome regulat 98.1 2.7E-05 6E-10 81.5 11.0 119 659-799 213-344 (435)
241 PRK09862 putative ATP-dependen 98.1 1.9E-05 4.1E-10 92.2 11.0 144 618-782 191-346 (506)
242 PRK00411 cdc6 cell division co 98.0 3.1E-05 6.7E-10 88.3 12.6 139 618-782 30-182 (394)
243 PHA02544 44 clamp loader, smal 98.0 3.5E-05 7.6E-10 85.2 12.2 136 211-385 26-163 (316)
244 smart00382 AAA ATPases associa 98.0 1.2E-05 2.6E-10 75.7 7.3 77 227-312 2-93 (148)
245 PRK14956 DNA polymerase III su 98.0 3.6E-05 7.8E-10 88.8 12.5 130 211-370 22-170 (484)
246 KOG0726 26S proteasome regulat 98.0 9E-06 1.9E-10 86.1 6.9 146 619-799 186-352 (440)
247 KOG0742 AAA+-type ATPase [Post 98.0 1.5E-05 3.2E-10 87.9 8.5 126 228-385 385-518 (630)
248 PRK06893 DNA replication initi 98.0 2.1E-05 4.5E-10 83.2 9.4 118 230-386 42-165 (229)
249 PRK10733 hflB ATP-dependent me 98.0 1.6E-05 3.4E-10 96.3 9.6 106 659-789 187-306 (644)
250 PTZ00112 origin recognition co 98.0 4.7E-05 1E-09 91.7 13.0 152 615-787 752-916 (1164)
251 TIGR02031 BchD-ChlD magnesium 98.0 8.3E-06 1.8E-10 97.6 6.8 114 657-783 16-137 (589)
252 PF13173 AAA_14: AAA domain 98.0 1.9E-05 4.2E-10 75.6 7.9 84 659-759 4-87 (128)
253 COG3283 TyrR Transcriptional r 98.0 3.2E-05 6.9E-10 84.2 10.0 110 658-781 228-342 (511)
254 PF01637 Arch_ATPase: Archaeal 98.0 1.3E-05 2.8E-10 83.4 7.1 160 211-388 4-197 (234)
255 TIGR00635 ruvB Holliday juncti 98.0 1.7E-05 3.6E-10 87.3 8.0 80 211-310 9-93 (305)
256 PRK08727 hypothetical protein; 98.0 4.4E-05 9.6E-10 81.0 11.0 78 658-758 42-121 (233)
257 PRK05642 DNA replication initi 98.0 2E-05 4.4E-10 83.7 8.3 121 227-385 45-169 (234)
258 KOG0743 AAA+-type ATPase [Post 97.9 1E-05 2.2E-10 91.0 5.8 99 659-789 237-354 (457)
259 COG1474 CDC6 Cdc6-related prot 97.9 8.8E-05 1.9E-09 83.7 13.2 148 209-381 20-189 (366)
260 PRK12402 replication factor C 97.9 5.6E-05 1.2E-09 84.1 11.6 95 211-310 20-137 (337)
261 KOG0744 AAA+-type ATPase [Post 97.9 1.1E-05 2.4E-10 86.8 5.4 84 230-314 180-267 (423)
262 PRK14962 DNA polymerase III su 97.9 4.5E-05 9.8E-10 88.8 11.0 141 211-383 18-177 (472)
263 PRK06526 transposase; Provisio 97.9 1.1E-05 2.3E-10 86.7 5.5 87 658-758 99-187 (254)
264 COG0606 Predicted ATPase with 97.9 5.6E-06 1.2E-10 93.7 3.1 152 618-793 179-353 (490)
265 COG1219 ClpX ATP-dependent pro 97.9 1.4E-05 3E-10 85.9 5.8 75 226-310 96-174 (408)
266 PF13401 AAA_22: AAA domain; P 97.9 1.2E-05 2.6E-10 76.5 4.5 103 657-762 4-118 (131)
267 PRK08903 DnaA regulatory inact 97.9 3E-05 6.5E-10 81.7 7.6 77 211-310 24-102 (227)
268 TIGR02903 spore_lon_C ATP-depe 97.9 7.1E-05 1.5E-09 90.2 11.7 63 211-273 159-221 (615)
269 TIGR01650 PD_CobS cobaltochela 97.9 3.3E-05 7.1E-10 85.1 8.1 157 206-388 42-228 (327)
270 PRK00080 ruvB Holliday junctio 97.9 3.4E-05 7.3E-10 86.1 8.1 80 211-310 30-114 (328)
271 PRK05642 DNA replication initi 97.8 8.7E-05 1.9E-09 78.8 10.8 78 658-758 46-125 (234)
272 TIGR00382 clpX endopeptidase C 97.8 2.4E-05 5.2E-10 89.3 6.8 73 226-310 115-193 (413)
273 KOG0745 Putative ATP-dependent 97.8 1.9E-05 4.1E-10 87.8 5.6 75 226-310 225-303 (564)
274 TIGR00764 lon_rel lon-related 97.8 4.8E-05 1E-09 91.4 9.2 53 612-684 12-64 (608)
275 PRK14960 DNA polymerase III su 97.8 0.00011 2.3E-09 87.4 11.7 120 211-355 20-157 (702)
276 COG3854 SpoIIIAA ncharacterize 97.8 8.7E-05 1.9E-09 76.7 9.2 130 218-377 128-273 (308)
277 PRK08181 transposase; Validate 97.8 3.9E-05 8.3E-10 83.0 7.1 86 659-758 108-195 (269)
278 COG4650 RtcR Sigma54-dependent 97.8 7.6E-05 1.7E-09 79.2 9.0 136 599-762 169-312 (531)
279 COG1239 ChlI Mg-chelatase subu 97.8 0.00018 3.8E-09 80.8 12.1 149 613-783 12-197 (423)
280 PRK12422 chromosomal replicati 97.8 4.3E-05 9.3E-10 88.5 7.6 127 227-386 141-275 (445)
281 PRK07940 DNA polymerase III su 97.8 0.00024 5.1E-09 81.1 13.3 125 228-386 37-180 (394)
282 PRK06835 DNA replication prote 97.8 4.4E-05 9.6E-10 84.9 7.3 90 658-759 184-275 (329)
283 TIGR02902 spore_lonB ATP-depen 97.8 5.7E-05 1.2E-09 89.5 8.6 62 211-272 70-131 (531)
284 PRK14949 DNA polymerase III su 97.8 0.00018 3.9E-09 87.9 12.8 118 215-358 25-161 (944)
285 PRK07952 DNA replication prote 97.8 9.1E-05 2E-09 79.0 9.1 89 658-758 100-190 (244)
286 PRK00149 dnaA chromosomal repl 97.7 3.6E-05 7.8E-10 89.6 6.4 128 228-386 149-284 (450)
287 PF00158 Sigma54_activat: Sigm 97.7 0.00016 3.4E-09 72.9 10.1 79 216-310 12-105 (168)
288 COG1474 CDC6 Cdc6-related prot 97.7 9.7E-05 2.1E-09 83.4 9.5 137 618-783 17-166 (366)
289 PRK13765 ATP-dependent proteas 97.7 7.4E-05 1.6E-09 89.7 8.8 53 612-684 25-77 (637)
290 KOG0737 AAA+-type ATPase [Post 97.7 5.9E-05 1.3E-09 82.9 7.1 69 656-744 126-198 (386)
291 TIGR03420 DnaA_homol_Hda DnaA 97.7 9.2E-05 2E-09 77.6 8.4 79 213-310 24-102 (226)
292 KOG0744 AAA+-type ATPase [Post 97.7 4.4E-05 9.6E-10 82.2 5.9 106 659-785 179-309 (423)
293 PF00910 RNA_helicase: RNA hel 97.7 0.0001 2.2E-09 68.5 7.6 96 660-781 1-106 (107)
294 PRK12323 DNA polymerase III su 97.7 0.00026 5.6E-09 84.1 12.5 92 213-310 23-136 (700)
295 PRK10787 DNA-binding ATP-depen 97.7 0.00011 2.4E-09 90.6 9.9 138 212-385 328-496 (784)
296 COG0465 HflB ATP-dependent Zn 97.7 0.00014 3E-09 85.8 10.0 147 618-795 150-310 (596)
297 TIGR00602 rad24 checkpoint pro 97.7 0.00012 2.6E-09 87.8 9.7 50 619-681 85-134 (637)
298 TIGR00362 DnaA chromosomal rep 97.7 8.4E-05 1.8E-09 85.3 8.0 86 658-757 137-226 (405)
299 PF01695 IstB_IS21: IstB-like 97.7 3E-05 6.4E-10 78.9 3.8 87 658-758 48-136 (178)
300 PRK08939 primosomal protein Dn 97.7 0.00013 2.9E-09 80.5 9.1 102 658-782 157-260 (306)
301 PRK04195 replication factor C 97.7 0.0002 4.3E-09 84.2 11.0 85 211-311 19-112 (482)
302 PLN03025 replication factor C 97.6 0.00028 6.1E-09 78.4 11.2 93 211-310 17-111 (319)
303 PRK14961 DNA polymerase III su 97.6 0.00016 3.5E-09 81.9 9.4 143 211-385 20-181 (363)
304 PRK06921 hypothetical protein; 97.6 8.7E-05 1.9E-09 80.4 6.9 86 657-758 117-210 (266)
305 COG1484 DnaC DNA replication p 97.6 7E-05 1.5E-09 80.5 6.1 100 658-782 106-208 (254)
306 PRK06581 DNA polymerase III su 97.6 0.00031 6.7E-09 73.8 10.5 102 657-781 15-127 (263)
307 KOG1969 DNA replication checkp 97.6 0.00025 5.5E-09 83.5 10.5 102 659-783 328-448 (877)
308 PRK14087 dnaA chromosomal repl 97.6 0.00017 3.7E-09 83.8 9.3 76 228-312 142-221 (450)
309 PRK07003 DNA polymerase III su 97.6 0.00039 8.4E-09 83.7 12.2 121 211-356 21-159 (830)
310 PF06068 TIP49: TIP49 C-termin 97.6 0.0002 4.4E-09 79.4 9.1 65 619-697 25-89 (398)
311 PRK08727 hypothetical protein; 97.6 0.00041 8.9E-09 73.6 11.2 120 225-384 39-164 (233)
312 KOG2004 Mitochondrial ATP-depe 97.6 0.00012 2.6E-09 85.9 7.5 90 211-313 416-520 (906)
313 COG1224 TIP49 DNA helicase TIP 97.6 0.00019 4.1E-09 78.4 8.5 66 618-697 39-104 (450)
314 PRK14958 DNA polymerase III su 97.6 0.00053 1.1E-08 80.8 13.0 92 213-310 23-131 (509)
315 COG1484 DnaC DNA replication p 97.6 0.00011 2.4E-09 78.9 6.7 81 214-310 94-179 (254)
316 PF00308 Bac_DnaA: Bacterial d 97.6 0.00028 6.1E-09 74.2 9.4 86 659-758 36-125 (219)
317 COG0542 clpA ATP-binding subun 97.6 0.00032 6.9E-09 84.8 10.6 110 619-762 171-301 (786)
318 PRK09183 transposase/IS protei 97.5 0.0002 4.4E-09 77.2 8.1 120 225-369 100-221 (259)
319 KOG0989 Replication factor C, 97.5 0.00019 4.2E-09 77.2 7.7 122 211-357 41-170 (346)
320 PRK07994 DNA polymerase III su 97.5 0.00054 1.2E-08 82.3 12.2 119 212-355 22-158 (647)
321 PRK08181 transposase; Validate 97.5 9.4E-05 2E-09 80.1 5.3 74 226-310 105-179 (269)
322 PRK06526 transposase; Provisio 97.5 0.00013 2.9E-09 78.4 6.3 74 226-310 97-171 (254)
323 COG0466 Lon ATP-dependent Lon 97.5 9.6E-05 2.1E-09 87.1 5.5 82 216-310 333-429 (782)
324 PHA02244 ATPase-like protein 97.5 0.00025 5.4E-09 79.3 8.5 80 213-310 107-192 (383)
325 PRK14964 DNA polymerase III su 97.5 0.00081 1.8E-08 78.5 12.9 94 211-310 17-128 (491)
326 TIGR03015 pepcterm_ATPase puta 97.5 0.00038 8.2E-09 74.9 9.4 94 212-310 25-135 (269)
327 PRK09183 transposase/IS protei 97.5 0.00018 4E-09 77.5 6.9 87 659-758 104-192 (259)
328 TIGR00362 DnaA chromosomal rep 97.5 0.00027 5.9E-09 81.1 8.7 128 228-386 137-272 (405)
329 PRK14957 DNA polymerase III su 97.5 0.00081 1.8E-08 79.5 12.6 119 212-355 22-158 (546)
330 PRK07764 DNA polymerase III su 97.5 0.0008 1.7E-08 83.2 13.1 119 212-355 21-159 (824)
331 PRK12422 chromosomal replicati 97.5 0.00023 5E-09 82.5 7.9 86 658-757 142-229 (445)
332 PRK14088 dnaA chromosomal repl 97.5 0.00028 6.1E-09 81.9 8.5 78 227-312 130-209 (440)
333 PRK12377 putative replication 97.5 0.0003 6.5E-09 75.3 7.8 74 226-310 100-175 (248)
334 PRK00149 dnaA chromosomal repl 97.4 0.00025 5.4E-09 82.6 7.8 86 658-757 149-238 (450)
335 PRK06620 hypothetical protein; 97.4 0.00032 6.8E-09 73.6 7.8 118 212-385 24-150 (214)
336 PRK13531 regulatory ATPase Rav 97.4 9.7E-05 2.1E-09 85.2 4.3 42 211-254 25-66 (498)
337 TIGR00390 hslU ATP-dependent p 97.4 0.00025 5.4E-09 80.4 7.4 58 227-294 47-106 (441)
338 PRK06645 DNA polymerase III su 97.4 0.00089 1.9E-08 78.6 12.2 94 211-310 25-140 (507)
339 cd01129 PulE-GspE PulE/GspE Th 97.4 0.0012 2.5E-08 71.5 11.8 97 656-762 79-177 (264)
340 KOG0732 AAA+-type ATPase conta 97.4 0.00058 1.3E-08 84.3 10.4 98 660-782 302-415 (1080)
341 PF13401 AAA_22: AAA domain; P 97.4 0.00013 2.9E-09 69.3 4.0 82 225-310 2-99 (131)
342 PF07724 AAA_2: AAA domain (Cd 97.4 7.9E-05 1.7E-09 75.3 2.4 75 225-310 1-80 (171)
343 KOG0743 AAA+-type ATPase [Post 97.4 0.00035 7.5E-09 78.9 7.5 65 226-310 234-298 (457)
344 COG2607 Predicted ATPase (AAA+ 97.4 0.00054 1.2E-08 71.5 8.4 77 215-308 73-149 (287)
345 COG0714 MoxR-like ATPases [Gen 97.4 0.00022 4.7E-09 79.7 6.0 140 211-380 29-189 (329)
346 PRK14952 DNA polymerase III su 97.4 0.0015 3.2E-08 78.1 13.2 120 212-356 18-158 (584)
347 PRK14088 dnaA chromosomal repl 97.4 0.00034 7.5E-09 81.1 7.7 86 659-757 132-221 (440)
348 PRK08691 DNA polymerase III su 97.4 0.0013 2.8E-08 79.0 12.4 94 211-310 21-131 (709)
349 PRK06921 hypothetical protein; 97.4 0.00033 7.2E-09 75.9 6.8 73 226-309 116-188 (266)
350 TIGR00678 holB DNA polymerase 97.4 0.0015 3.2E-08 66.8 11.2 135 219-386 5-159 (188)
351 PRK06835 DNA replication prote 97.3 0.0008 1.7E-08 75.0 9.7 128 226-383 182-318 (329)
352 PRK08116 hypothetical protein; 97.3 0.00049 1.1E-08 74.7 7.8 71 229-310 116-190 (268)
353 PRK14970 DNA polymerase III su 97.3 0.0012 2.5E-08 74.9 11.2 141 211-383 22-168 (367)
354 PRK14959 DNA polymerase III su 97.3 0.0021 4.6E-08 76.7 13.6 43 211-253 20-64 (624)
355 TIGR03015 pepcterm_ATPase puta 97.3 0.00082 1.8E-08 72.3 9.4 94 657-757 43-148 (269)
356 PRK07952 DNA replication prote 97.3 0.00054 1.2E-08 73.2 7.7 73 227-310 99-174 (244)
357 PF13173 AAA_14: AAA domain 97.3 0.00038 8.2E-09 66.7 6.0 72 227-310 2-73 (128)
358 TIGR02397 dnaX_nterm DNA polym 97.3 0.0017 3.7E-08 72.9 12.2 94 211-310 19-129 (355)
359 PRK05201 hslU ATP-dependent pr 97.3 0.00036 7.7E-09 79.2 6.6 59 227-295 50-110 (443)
360 TIGR02974 phageshock_pspF psp 97.3 0.0014 3.1E-08 73.2 11.2 51 216-274 12-62 (329)
361 PRK07133 DNA polymerase III su 97.3 0.0019 4E-08 78.3 12.7 90 215-310 27-130 (725)
362 PF01695 IstB_IS21: IstB-like 97.3 0.00011 2.5E-09 74.7 2.1 75 225-310 45-120 (178)
363 PRK14969 DNA polymerase III su 97.3 0.0022 4.8E-08 76.1 13.1 94 211-310 20-131 (527)
364 PRK14086 dnaA chromosomal repl 97.3 0.00088 1.9E-08 79.6 9.5 86 659-758 316-405 (617)
365 PRK14087 dnaA chromosomal repl 97.2 0.00075 1.6E-08 78.5 8.5 89 658-758 142-234 (450)
366 KOG0652 26S proteasome regulat 97.2 0.00098 2.1E-08 70.0 8.3 134 619-789 172-326 (424)
367 PRK14951 DNA polymerase III su 97.2 0.0025 5.3E-08 76.5 12.8 92 213-310 23-136 (618)
368 COG1221 PspF Transcriptional r 97.2 0.00053 1.1E-08 77.6 6.7 131 225-386 99-251 (403)
369 PRK11608 pspF phage shock prot 97.2 0.002 4.4E-08 71.8 11.1 56 211-273 11-68 (326)
370 TIGR02688 conserved hypothetic 97.2 0.0062 1.4E-07 69.2 14.8 142 596-781 165-311 (449)
371 cd01131 PilT Pilus retraction 97.2 0.0026 5.6E-08 65.8 11.1 97 658-761 2-101 (198)
372 KOG0741 AAA+-type ATPase [Post 97.2 0.0019 4.2E-08 73.8 10.6 119 229-368 540-663 (744)
373 PRK05563 DNA polymerase III su 97.2 0.0026 5.7E-08 75.9 12.5 94 211-310 21-131 (559)
374 PF00308 Bac_DnaA: Bacterial d 97.2 0.00077 1.7E-08 70.9 6.8 146 212-386 16-170 (219)
375 COG3284 AcoR Transcriptional a 97.1 0.00053 1.2E-08 80.3 5.9 109 657-781 336-455 (606)
376 PF14532 Sigma54_activ_2: Sigm 97.1 0.00038 8.2E-09 67.6 4.0 99 214-355 9-109 (138)
377 PRK15455 PrkA family serine pr 97.1 0.00053 1.2E-08 80.2 5.7 51 619-681 77-127 (644)
378 PRK08939 primosomal protein Dn 97.1 0.00057 1.2E-08 75.5 5.8 74 226-310 155-229 (306)
379 PRK09087 hypothetical protein; 97.1 0.0018 3.9E-08 68.5 9.2 125 212-386 29-157 (226)
380 PRK09376 rho transcription ter 97.1 0.00091 2E-08 75.3 7.2 93 216-313 157-272 (416)
381 PF12775 AAA_7: P-loop contain 97.1 0.0011 2.3E-08 72.1 7.6 109 659-782 35-157 (272)
382 PF00493 MCM: MCM2/3/5 family 97.1 0.00035 7.5E-09 78.1 3.8 157 609-782 15-173 (331)
383 PRK14963 DNA polymerase III su 97.1 0.004 8.6E-08 73.4 12.7 94 211-310 18-128 (504)
384 PRK05896 DNA polymerase III su 97.1 0.0046 9.9E-08 73.6 13.2 94 211-310 21-131 (605)
385 KOG0740 AAA+-type ATPase [Post 97.1 0.00074 1.6E-08 76.7 6.1 95 618-744 153-257 (428)
386 PRK14948 DNA polymerase III su 97.1 0.0037 7.9E-08 75.5 12.3 94 211-310 20-133 (620)
387 PF05729 NACHT: NACHT domain 97.1 0.0023 4.9E-08 62.9 8.9 109 659-781 2-128 (166)
388 PF00931 NB-ARC: NB-ARC domain 97.1 0.00088 1.9E-08 72.7 6.3 94 211-310 1-113 (287)
389 PRK14086 dnaA chromosomal repl 97.0 0.0028 6E-08 75.5 10.6 76 228-312 315-392 (617)
390 PF02861 Clp_N: Clp amino term 97.0 0.00094 2E-08 53.5 4.6 38 129-166 12-51 (53)
391 TIGR01420 pilT_fam pilus retra 97.0 0.0034 7.3E-08 70.6 10.7 99 656-761 121-222 (343)
392 PRK08451 DNA polymerase III su 97.0 0.0051 1.1E-07 72.6 12.5 94 211-310 18-129 (535)
393 PRK00440 rfc replication facto 97.0 0.0019 4E-08 71.3 8.5 93 211-310 22-114 (319)
394 PHA00729 NTP-binding motif con 97.0 0.0023 5.1E-08 67.2 8.6 37 216-252 6-42 (226)
395 cd01128 rho_factor Transcripti 97.0 0.0013 2.7E-08 70.6 6.7 37 217-253 5-42 (249)
396 KOG0480 DNA replication licens 97.0 0.0035 7.7E-08 73.1 10.5 151 607-782 334-484 (764)
397 TIGR02533 type_II_gspE general 97.0 0.0041 8.8E-08 73.0 11.4 98 655-762 240-339 (486)
398 PRK09111 DNA polymerase III su 97.0 0.0059 1.3E-07 73.3 12.7 94 211-310 29-144 (598)
399 TIGR01817 nifA Nif-specific re 97.0 0.0023 4.9E-08 76.3 9.1 57 211-274 201-259 (534)
400 PRK14955 DNA polymerase III su 97.0 0.0065 1.4E-07 69.7 12.5 43 211-253 20-64 (397)
401 PRK06620 hypothetical protein; 96.9 0.0027 5.8E-08 66.6 8.1 24 658-681 45-68 (214)
402 PRK09087 hypothetical protein; 96.9 0.0019 4.1E-08 68.4 6.9 24 658-681 45-68 (226)
403 KOG0742 AAA+-type ATPase [Post 96.9 0.0015 3.2E-08 72.6 6.1 69 655-743 382-454 (630)
404 PRK14965 DNA polymerase III su 96.9 0.007 1.5E-07 72.7 12.4 94 211-310 20-131 (576)
405 COG2607 Predicted ATPase (AAA+ 96.9 0.011 2.4E-07 62.0 11.9 120 620-782 62-183 (287)
406 PRK09112 DNA polymerase III su 96.9 0.01 2.2E-07 66.9 12.9 43 212-254 29-72 (351)
407 PRK15429 formate hydrogenlyase 96.9 0.0051 1.1E-07 75.6 11.3 144 211-386 381-551 (686)
408 PRK12608 transcription termina 96.9 0.0034 7.4E-08 70.5 8.8 95 213-313 118-236 (380)
409 PRK06647 DNA polymerase III su 96.8 0.0096 2.1E-07 71.1 13.0 90 215-310 25-131 (563)
410 TIGR02524 dot_icm_DotB Dot/Icm 96.8 0.0059 1.3E-07 68.9 10.7 101 657-762 134-240 (358)
411 TIGR01618 phage_P_loop phage n 96.8 0.0019 4.1E-08 67.8 6.2 87 657-752 12-101 (220)
412 TIGR02538 type_IV_pilB type IV 96.8 0.0065 1.4E-07 72.8 11.5 98 655-762 314-413 (564)
413 COG2804 PulE Type II secretory 96.8 0.0059 1.3E-07 70.4 10.5 97 655-762 256-355 (500)
414 PRK14953 DNA polymerase III su 96.8 0.0096 2.1E-07 70.0 12.6 94 211-310 20-131 (486)
415 PRK14950 DNA polymerase III su 96.8 0.0094 2E-07 71.8 12.9 94 211-310 20-132 (585)
416 COG2204 AtoC Response regulato 96.8 0.0049 1.1E-07 71.1 9.7 144 213-385 151-315 (464)
417 PRK07471 DNA polymerase III su 96.8 0.013 2.8E-07 66.4 13.0 44 211-254 23-68 (365)
418 cd01120 RecA-like_NTPases RecA 96.8 0.008 1.7E-07 58.6 10.0 36 660-695 2-37 (165)
419 PF12775 AAA_7: P-loop contain 96.8 0.00043 9.4E-09 75.2 0.9 139 215-383 22-181 (272)
420 PRK10436 hypothetical protein; 96.8 0.006 1.3E-07 71.0 10.3 98 655-762 216-315 (462)
421 PF00437 T2SE: Type II/IV secr 96.8 0.0027 5.9E-08 68.7 6.9 96 657-762 127-224 (270)
422 PRK11388 DNA-binding transcrip 96.7 0.0053 1.1E-07 74.8 9.8 142 211-386 330-497 (638)
423 PF12774 AAA_6: Hydrolytic ATP 96.7 0.0048 1E-07 65.5 8.1 97 661-781 36-142 (231)
424 PRK15424 propionate catabolism 96.7 0.0097 2.1E-07 70.6 11.3 147 215-386 231-403 (538)
425 PRK04296 thymidine kinase; Pro 96.6 0.0098 2.1E-07 61.1 9.8 97 659-759 4-106 (190)
426 COG5271 MDN1 AAA ATPase contai 96.6 0.0081 1.8E-07 75.9 10.2 107 659-780 151-265 (4600)
427 PRK06305 DNA polymerase III su 96.6 0.016 3.5E-07 67.5 12.4 43 211-253 22-65 (451)
428 cd01130 VirB11-like_ATPase Typ 96.6 0.012 2.6E-07 60.2 9.9 93 658-761 26-126 (186)
429 KOG3347 Predicted nucleotide k 96.6 0.0039 8.4E-08 60.7 5.7 90 658-781 8-102 (176)
430 PRK05022 anaerobic nitric oxid 96.5 0.011 2.5E-07 70.0 10.7 57 211-274 192-250 (509)
431 TIGR02525 plasmid_TraJ plasmid 96.5 0.01 2.3E-07 67.2 9.9 98 657-762 149-253 (372)
432 PF05729 NACHT: NACHT domain 96.5 0.0085 1.8E-07 58.8 7.8 119 229-360 2-134 (166)
433 TIGR00767 rho transcription te 96.5 0.0075 1.6E-07 68.4 8.0 38 217-254 157-195 (415)
434 PF01637 Arch_ATPase: Archaeal 96.5 0.0055 1.2E-07 63.6 6.6 102 657-758 20-150 (234)
435 TIGR02329 propionate_PrpR prop 96.4 0.014 3.1E-07 69.1 10.6 139 215-385 224-387 (526)
436 KOG0477 DNA replication licens 96.4 0.0019 4E-08 75.0 3.1 147 614-782 445-598 (854)
437 PF13604 AAA_30: AAA domain; P 96.4 0.01 2.2E-07 61.3 8.4 98 658-758 19-119 (196)
438 PRK14974 cell division protein 96.4 0.042 9E-07 61.5 13.6 98 657-757 140-249 (336)
439 PF00931 NB-ARC: NB-ARC domain 96.4 0.015 3.3E-07 63.0 10.1 106 656-781 18-137 (287)
440 TIGR00602 rad24 checkpoint pro 96.4 0.013 2.8E-07 70.6 10.2 41 211-251 89-134 (637)
441 COG1241 MCM2 Predicted ATPase 96.4 0.012 2.7E-07 70.8 9.9 137 610-765 278-416 (682)
442 COG0563 Adk Adenylate kinase a 96.4 0.0018 4E-08 65.8 2.5 64 228-308 1-64 (178)
443 PRK00771 signal recognition pa 96.4 0.062 1.3E-06 62.3 15.0 69 623-697 67-135 (437)
444 COG3604 FhlA Transcriptional r 96.3 0.0076 1.7E-07 69.0 7.1 143 211-382 228-394 (550)
445 PRK13894 conjugal transfer ATP 96.3 0.016 3.6E-07 64.4 9.7 93 658-760 149-244 (319)
446 PRK13406 bchD magnesium chelat 96.3 0.013 2.7E-07 70.3 9.2 108 657-779 25-142 (584)
447 TIGR01425 SRP54_euk signal rec 96.3 0.075 1.6E-06 61.2 15.0 99 655-756 98-208 (429)
448 PRK14954 DNA polymerase III su 96.3 0.037 7.9E-07 66.8 13.0 41 213-253 22-64 (620)
449 COG1618 Predicted nucleotide k 96.2 0.019 4.2E-07 56.9 8.4 96 657-760 5-131 (179)
450 TIGR00064 ftsY signal recognit 96.2 0.048 1E-06 59.4 12.5 70 623-697 43-112 (272)
451 PRK13900 type IV secretion sys 96.2 0.038 8.3E-07 61.8 11.8 116 620-760 143-260 (332)
452 PRK12723 flagellar biosynthesi 96.2 0.035 7.6E-07 63.3 11.6 96 658-757 175-281 (388)
453 PRK05564 DNA polymerase III su 96.2 0.052 1.1E-06 60.2 12.7 90 215-310 13-105 (313)
454 KOG1942 DNA helicase, TBP-inte 96.2 0.0063 1.4E-07 65.1 5.1 64 618-695 38-101 (456)
455 PLN02165 adenylate isopentenyl 96.1 0.0062 1.3E-07 67.6 5.0 47 205-251 21-67 (334)
456 PRK11889 flhF flagellar biosyn 96.1 0.059 1.3E-06 61.2 12.7 97 658-757 242-347 (436)
457 PRK13833 conjugal transfer pro 96.1 0.021 4.5E-07 63.5 9.2 93 658-760 145-240 (323)
458 KOG1969 DNA replication checkp 96.1 0.01 2.3E-07 70.4 7.0 86 211-308 309-397 (877)
459 COG5271 MDN1 AAA ATPase contai 96.1 0.012 2.7E-07 74.4 7.7 113 658-781 889-1007(4600)
460 PF13207 AAA_17: AAA domain; P 96.1 0.0054 1.2E-07 57.5 3.8 32 659-695 1-32 (121)
461 PRK08118 topology modulation p 96.1 0.009 2E-07 60.1 5.6 32 229-270 3-34 (167)
462 PRK14971 DNA polymerase III su 96.1 0.042 9.1E-07 66.5 12.2 92 213-310 24-133 (614)
463 PRK06696 uridine kinase; Valid 96.1 0.013 2.9E-07 61.6 7.2 59 624-697 4-62 (223)
464 COG1224 TIP49 DNA helicase TIP 96.1 0.0092 2E-07 65.7 5.8 45 226-271 64-109 (450)
465 PF13207 AAA_17: AAA domain; P 96.0 0.0064 1.4E-07 57.0 4.0 31 230-270 2-32 (121)
466 COG3854 SpoIIIAA ncharacterize 96.0 0.041 8.9E-07 57.5 9.8 99 659-760 139-244 (308)
467 COG3829 RocR Transcriptional r 96.0 0.0087 1.9E-07 69.4 5.4 144 211-384 250-419 (560)
468 KOG0991 Replication factor C, 96.0 0.016 3.4E-07 60.4 6.7 96 209-313 29-130 (333)
469 PRK12724 flagellar biosynthesi 95.9 0.11 2.4E-06 59.5 13.9 95 658-757 224-326 (432)
470 PRK10867 signal recognition pa 95.9 0.11 2.4E-06 60.1 14.1 88 655-745 98-196 (433)
471 cd01120 RecA-like_NTPases RecA 95.9 0.019 4.2E-07 55.8 6.9 24 230-253 2-25 (165)
472 COG0470 HolB ATPase involved i 95.9 0.078 1.7E-06 58.4 12.5 96 213-310 8-121 (325)
473 TIGR02782 TrbB_P P-type conjug 95.9 0.03 6.5E-07 61.8 8.9 93 658-760 133-229 (299)
474 PF01583 APS_kinase: Adenylyls 95.9 0.025 5.4E-07 56.3 7.4 66 230-305 5-80 (156)
475 PF05970 PIF1: PIF1-like helic 95.8 0.032 6.9E-07 63.3 9.3 144 622-789 5-156 (364)
476 COG0593 DnaA ATPase involved i 95.8 0.023 5E-07 64.7 8.0 85 657-756 113-201 (408)
477 PF13604 AAA_30: AAA domain; P 95.8 0.086 1.9E-06 54.5 11.7 37 216-253 8-44 (196)
478 PRK10820 DNA-binding transcrip 95.8 0.039 8.4E-07 65.6 10.3 57 211-274 209-267 (520)
479 PF12780 AAA_8: P-loop contain 95.8 0.066 1.4E-06 58.1 11.2 104 620-763 10-120 (268)
480 PHA00729 NTP-binding motif con 95.8 0.02 4.4E-07 60.2 7.0 25 658-682 18-42 (226)
481 TIGR00368 Mg chelatase-related 95.8 0.016 3.5E-07 68.1 7.0 39 211-250 196-234 (499)
482 PRK13851 type IV secretion sys 95.8 0.036 7.7E-07 62.3 9.0 93 657-760 162-261 (344)
483 PHA02774 E1; Provisional 95.7 0.04 8.7E-07 65.0 9.6 94 658-781 435-531 (613)
484 PF13191 AAA_16: AAA ATPase do 95.7 0.0091 2E-07 60.0 3.9 63 619-696 1-63 (185)
485 PRK08058 DNA polymerase III su 95.7 0.1 2.2E-06 58.4 12.5 136 216-385 16-172 (329)
486 TIGR02788 VirB11 P-type DNA tr 95.7 0.045 9.8E-07 60.6 9.4 92 658-760 145-243 (308)
487 PRK15455 PrkA family serine pr 95.7 0.011 2.4E-07 69.5 4.7 44 211-254 81-130 (644)
488 cd00071 GMPK Guanosine monopho 95.7 0.0095 2.1E-07 57.9 3.5 44 230-273 2-56 (137)
489 PRK04296 thymidine kinase; Pro 95.6 0.02 4.3E-07 58.9 6.0 24 230-253 5-28 (190)
490 TIGR00959 ffh signal recogniti 95.6 0.23 4.9E-06 57.5 15.2 42 656-697 98-140 (428)
491 PRK00131 aroK shikimate kinase 95.6 0.031 6.7E-07 55.7 7.2 69 225-305 2-81 (175)
492 PF13671 AAA_33: AAA domain; P 95.6 0.029 6.2E-07 54.1 6.8 62 230-302 2-75 (143)
493 KOG1808 AAA ATPase containing 95.6 0.027 5.9E-07 73.7 8.3 89 659-758 442-533 (1856)
494 TIGR03574 selen_PSTK L-seryl-t 95.6 0.026 5.6E-07 60.4 7.0 24 230-253 2-25 (249)
495 cd01130 VirB11-like_ATPase Typ 95.6 0.016 3.5E-07 59.2 5.2 39 213-252 12-50 (186)
496 PRK05703 flhF flagellar biosyn 95.6 0.099 2.1E-06 60.5 12.1 97 658-757 222-326 (424)
497 PF05621 TniB: Bacterial TniB 95.6 0.11 2.5E-06 56.7 11.7 127 612-756 28-172 (302)
498 PF12780 AAA_8: P-loop contain 95.5 0.066 1.4E-06 58.1 9.9 83 214-310 19-101 (268)
499 cd00227 CPT Chloramphenicol (C 95.5 0.017 3.7E-07 58.3 5.1 25 227-251 2-26 (175)
500 PRK06217 hypothetical protein; 95.5 0.028 6E-07 57.3 6.6 56 229-294 3-63 (183)
No 1
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-119 Score=1049.93 Aligned_cols=603 Identities=21% Similarity=0.302 Sum_probs=495.1
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCcHHHHHHHHcCCChhhHHHHHHHHHHHhccCCCCCCCCCCC
Q 003038 11 GLTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALELCFNVALNRLPASTSTPMLG 90 (854)
Q Consensus 11 ~fT~~a~~aL~~A~~~A~~~gh~~Vt~eHLLlaLL~~~~s~l~~iL~~~gvd~~~~~aL~~~l~~~L~rlp~~~~~~~~~ 90 (854)
+||+.++.+|..|+++|+.++|.+|+++|||++|+.++.+. .++..+|++. +.++..++..+.++|...+.
T Consensus 1 ~~~~~~~~~l~~a~~~a~~~~h~~~~~eHll~~ll~~~~~~--~~l~~~~~~~---~~l~~~~~~~~~~~~~~~~~---- 71 (786)
T COG0542 1 KLTERAQKALELAQELARMRRHEYVTPEHLLLALLDQPKGD--ELLNLCGIDL---DKLRQELEEFIDKLPKVLGS---- 71 (786)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHcCCchH--HHHHHcCCCH---HHHHHHHHHHHhccCCCCCC----
Confidence 58999999999999999999999999999999999999886 8999999886 89999999999998876531
Q ss_pred CCccChhHHHHHHHHHHHHHHHhhhCCcccccccccccccCHHHHHHHhccCC--hHHHHHHHhCCCHHHHHHHHHHHhh
Q 003038 91 GHCQFPTISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIELEQLIISILDDP--SVSRVMREAGFSSTQVKSNVEQAVS 168 (854)
Q Consensus 91 ~~~~~p~~s~~L~~al~~A~~~~~~~~~~~~~~~~~~~~I~~eHLLLALL~d~--~~~~iL~~~Gi~~~~l~~~v~~~l~ 168 (854)
..+++.+.+.++.+...|+..++ + +|+++|||+|++.++ .+.++|...|++...+...+. .++
T Consensus 72 -~~~s~~~~~~~~~a~~~a~~~~~----~---------~v~~~~llla~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~ 136 (786)
T COG0542 72 -PYLSPRLKRVLERAWLLAQSLGD----E---------YVSTEHLLLALLNEPESVAAYILKKLGVTRKDVEELIE-ELR 136 (786)
T ss_pred -CCCCHHHHHHHHHHHHHHHhccC----c---------cccHHHHHHHHhcccchHHHHHHHhccCCHHHHHHHHH-HHh
Confidence 22456666666666666665421 3 599999999999986 678999999999998865555 344
Q ss_pred hhhccCCCCCCCCCcccccccccccccccccccCCCCCCCCC--cHHHHHHHHHHhhccCcCCceeecCCCCCHHHHHHH
Q 003038 169 LEICSQSTPVSSNKSKESNVLVLSQTASATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRG 246 (854)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ldpv--r~~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~ 246 (854)
+ +....+.. .......+.+|+.|+|+.|++|+|||| ||+||+|+|+||+||+||||||||||||||||||+|
T Consensus 137 ~---~~~~~~~~---~~~~~~~L~~y~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEG 210 (786)
T COG0542 137 G---GNEVDSKN---AEEDQDALEKYTRDLTELAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEG 210 (786)
T ss_pred c---ccccCCcc---cccchhhHHHHhhhhHHHHhcCCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHH
Confidence 3 11111110 011235789999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCcccCCceEEEccccccccc--chHHHHHHHHHHHHHHHhhhCCCeEEEeCccccc-ccccccccccccc
Q 003038 247 VIDKIEKGDVPEALRDVKCLPLSISSFRHM--NRVEVEQRVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGY 323 (854)
Q Consensus 247 la~~i~~~~vp~~L~~~~~~~l~~~~l~~~--~rge~E~rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~ 323 (854)
||+||++|+||+.|+++++++||+++|++| ||||||+||+.|++++++. + ++||||||||++ |+|+++
T Consensus 211 LA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~-~-~vILFIDEiHtiVGAG~~~------- 281 (786)
T COG0542 211 LAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKS-K-NVILFIDEIHTIVGAGATE------- 281 (786)
T ss_pred HHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcC-C-CeEEEEechhhhcCCCccc-------
Confidence 999999999999999999999999999998 9999999999999999987 4 999999999999 998763
Q ss_pred chhhhHH-HHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchhhhhccCCCCCCCchHHHHhh-------------
Q 003038 324 YCSIEHI-IMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLETLWSLHPLTIPAGSLSLSLI------------- 389 (854)
Q Consensus 324 ~~~~~~~-~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~~~v~i~~~sl~~al~------------- 389 (854)
| +||++|+|||+..+|+|+||||||++||+|||++|+||+| |||+|.|.+|+++.++.
T Consensus 282 ------G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~iEKD~AL~R--RFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH 353 (786)
T COG0542 282 ------GGAMDAANLLKPALARGELRCIGATTLDEYRKYIEKDAALER--RFQKVLVDEPSVEDTIAILRGLKERYEAHH 353 (786)
T ss_pred ------ccccchhhhhHHHHhcCCeEEEEeccHHHHHHHhhhchHHHh--cCceeeCCCCCHHHHHHHHHHHHHHHHHcc
Confidence 2 5899999999555558999999999999999999999999 99999999999887653
Q ss_pred ---cccchh------hhccccCCcCCCcccccccchhhhhhhcccccchhhhHHHHhhhhcccCCCCCCCCCChHHHHhh
Q 003038 390 ---TTDSDL------QSQSTSKKAESGVSWLLFEGEEENKQLTCCADCSAKFEAEARSLQSSSCNSDSPTSSLPAWLQQY 460 (854)
Q Consensus 390 ---~~~s~~------~~~~~~~~~~pdkaidlld~a~~~~~~~c~~~~~~~~e~e~~~~~~~~~~~~~~~~~lp~~l~~~ 460 (854)
++|+++ +.||+++|++|||||||+|+|++++.+ + .. .|..|+.+
T Consensus 354 ~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~l------------~--------------~~-~p~~l~~~ 406 (786)
T COG0542 354 GVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVRL------------E--------------ID-KPEELDEL 406 (786)
T ss_pred CceecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHh------------c--------------cc-CCcchhHH
Confidence 455553 459999999999999999999888442 1 11 34444444
Q ss_pred HHHHhhcccCCCcccchhhHHHHHHHHhhhcccCccccccccccccCCCCCCCCcccccccCcchhhhhhhhhccccccc
Q 003038 461 KNEKKATLSNNDKDSGVRDLCKKWNSICNSIHKQPYYSERTLTFSSASPSSSTSGFSYDQQYPNFHKTHRDWAVVEPKQS 540 (854)
Q Consensus 461 ~~~~~~~~~~~d~~~~~~~L~~~w~~~~~~~~~~~~~~~~~~~~~s~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~p 540 (854)
+.+...+.. ++.... +..+...+.. +. .. ..+.. ..+|
T Consensus 407 ~~~~~~l~~--e~~~~~---~e~~~~~k~~----------------------~~--~~----~~~~~---------~~~~ 444 (786)
T COG0542 407 ERELAQLEI--EKEALE---REQDEKEKKL----------------------ID--EI----IKLKE---------GRIP 444 (786)
T ss_pred HHHHHHHHH--HHHHHh---hhhhHHHHHH----------------------HH--HH----HHHhh---------hhhh
Confidence 432211000 000000 0000000000 00 00 00000 0111
Q ss_pred hhccccccccccccCCCCCcccccccccccccccccccCCCCCCCCCCccccccc--hhh----hhhhhhhHHHHHHHHH
Q 003038 541 WREHHFLFSHEASDKSTSEPSLRLYIPEHKDLKQPLSSNRNSTPNSTSSSDIMEM--EYV----HKFKELNSENLTSLCN 614 (854)
Q Consensus 541 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~v--~~~----~~~~~~~~e~l~~L~~ 614 (854)
..++ + + . . .|+.++|++| +|| .++.+.+.+.|.+|++
T Consensus 445 ~~~~-~-----------------------------~-~-----~-~v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~ 487 (786)
T COG0542 445 ELEK-E-----------------------------L-E-----A-EVDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLER 487 (786)
T ss_pred hHHH-H-----------------------------H-h-----h-ccCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHH
Confidence 1110 0 0 0 0 1556677777 887 7788999999999999
Q ss_pred hhcCcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccc
Q 003038 615 ALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALS 694 (854)
Q Consensus 615 ~L~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s 694 (854)
.|.++|+||++||..|+.+|++.|+|+.+|+ ||.|+|||+||||||||+|||+||+.|||++.++|+||||
T Consensus 488 ~L~~rViGQd~AV~avs~aIrraRaGL~dp~---------rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMS 558 (786)
T COG0542 488 RLKKRVIGQDEAVEAVSDAIRRARAGLGDPN---------RPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMS 558 (786)
T ss_pred HHhcceeChHHHHHHHHHHHHHHhcCCCCCC---------CCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechH
Confidence 9999999999999999999999999999986 8999999999999999999999999999999999999999
Q ss_pred cccCcCCCccccccccccC-CCCCC-chHH--HHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceee
Q 003038 695 SFSSTRADSTEDSRNKRSR-DEQSC-SYIE--RFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVS 770 (854)
Q Consensus 695 ~~~~~~~~s~e~~~~~rl~-~~~g~-g~~e--~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~ 770 (854)
+|+ ++|+++||+ +|||| ||.+ +|+|+||++||+||||||||||||+|+|.|||+||+|++||++|++||
T Consensus 559 Ey~-------EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~Vd 631 (786)
T COG0542 559 EYM-------EKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVD 631 (786)
T ss_pred HHH-------HHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEe
Confidence 999 999999999 59999 9998 999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEecCC
Q 003038 771 LGDAIVILSCES 782 (854)
Q Consensus 771 ~~~aIiIlTsn~ 782 (854)
|+|||||||||.
T Consensus 632 FrNtiIImTSN~ 643 (786)
T COG0542 632 FRNTIIIMTSNA 643 (786)
T ss_pred cceeEEEEeccc
Confidence 999999999995
No 2
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9e-112 Score=999.19 Aligned_cols=681 Identities=38% Similarity=0.551 Sum_probs=530.9
Q ss_pred CCCCccchHHhhhHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCcHHHHHHHHcCCChhhHHHHHHHHHHHhccC
Q 003038 1 MRAGGCTIQQGLTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALELCFNVALNRL 80 (854)
Q Consensus 1 mr~~~~~~~~~fT~~a~~aL~~A~~~A~~~gh~~Vt~eHLLlaLL~~~~s~l~~iL~~~gvd~~~~~aL~~~l~~~L~rl 80 (854)
||+|++++++.||++|+.+|..|+.+|+++||++|||+|++.+||.+++|.++++|.+.+- +||.+++.|+++.|+++
T Consensus 1 m~t~~~t~~q~lT~~Aa~~L~~a~~~Arrrgh~qvtplH~~~~LLs~~t~~lr~ac~~~~~--l~~ralelc~~v~l~rl 78 (898)
T KOG1051|consen 1 MRTGVYTVQQTLTEEAATVLKQAVTEARRRGHAQVTPLHVASTLLSSPTGILRRACIKSHP--LQCRALELCFNVSLNRL 78 (898)
T ss_pred CCCcccchHhhhCHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHcCCchHHHHHHHhcCc--ccHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999983 46899999999999999
Q ss_pred CCCCCCCCCCCCccChhHHHHHHHHHHHHHHHhhhCCcccccccccccccCHHHHHHHhccCChHHHHHHHhCCCHHHHH
Q 003038 81 PASTSTPMLGGHCQFPTISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIELEQLIISILDDPSVSRVMREAGFSSTQVK 160 (854)
Q Consensus 81 p~~~~~~~~~~~~~~p~~s~~L~~al~~A~~~~~~~~~~~~~~~~~~~~I~~eHLLLALL~d~~~~~iL~~~Gi~~~~l~ 160 (854)
|++. +|+.++.|..|+++|++++++++.+++|| +++|..+.|++++++||.++++|+++|+++..++
T Consensus 79 pt~~----------~p~~sn~l~aalkr~qa~qrr~~~~~~~~---~vkvE~~~li~silDdp~vsrv~reag~~s~~vK 145 (898)
T KOG1051|consen 79 PTSY----------GPPVSNALMAALKRAQAHQRRGCEEQQQQ---AVKVELEQLILSILDDPSVSRVMREAGFSSSAVK 145 (898)
T ss_pred cCCC----------CCccchHhHHHHHHHHHHHHhcchhhccc---hhhHhHHhhheeeecCchHHHHHHHhcCChHHHH
Confidence 9864 37889999999999999999998777666 4566666678888999999999999999999999
Q ss_pred HHHHHHhhhhhccCCCCCCCCCcccccccccccccccccccCCCCCCCCC--c-HHHHHHHHHHhhccCcCCceeecCCC
Q 003038 161 SNVEQAVSLEICSQSTPVSSNKSKESNVLVLSQTASATKVSKPRVSLDPI--R-NEDVMYVIENLMSKRKRNFVVVGECL 237 (854)
Q Consensus 161 ~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ldpv--r-~~ei~~v~~~L~r~~k~n~vLvGe~G 237 (854)
..|++.... .+.+. .++ ......+.+|+.+++..+++|++||| | ++||+|||+||+||+||||||||+||
T Consensus 146 ~~ve~~~g~----~~~~~-~~~--~~~~~~L~~~~~dl~p~a~~gkldPvigr~deeirRvi~iL~Rrtk~NPvLVG~~g 218 (898)
T KOG1051|consen 146 SAVEQPVGQ----FRSPS-RGP--LWPLLFLENYGTDLTPRARQGKLDPVIGRHDEEIRRVIEILSRKTKNNPVLVGEPG 218 (898)
T ss_pred HHHHhhccc----cCCCC-cCC--ccchhHHHhcccccChhhhccCCCCccCCchHHHHHHHHHHhccCCCCceEEecCC
Confidence 999974421 11111 011 11234577889999999989999999 6 99999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCcccCCceEEEccccccccc--chHHHHHHHHHHHHHHHhhhCCCeEEEeCccccc-cccc
Q 003038 238 ASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHM--NRVEVEQRVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRA 314 (854)
Q Consensus 238 vGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~--~rge~E~rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~ 314 (854)
||||++|+++|+||++|+||..|.+++++.|+++.+.+| +|||||.|+++|+++|++. ++++|||||||||+ +.+.
T Consensus 219 vgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~-~~gvILfigelh~lvg~g~ 297 (898)
T KOG1051|consen 219 VGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESG-GGGVILFLGELHWLVGSGS 297 (898)
T ss_pred CCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcC-CCcEEEEecceeeeecCCC
Confidence 999999999999999999999999999999999999887 9999999999999999975 78999999999999 8876
Q ss_pred cccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchhhhhccCCCCCCCch-HHHHhh----
Q 003038 315 SSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLETLWSLHPLTIPAGS-LSLSLI---- 389 (854)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~~~v~i~~~s-l~~al~---- 389 (854)
+ ++.|+++++|+|..++|.||||||||++||+||+++||+|||+|.+|.|++|..+ +...|+
T Consensus 298 ~-------------~~~~d~~nlLkp~L~rg~l~~IGatT~e~Y~k~iekdPalErrw~l~~v~~pS~~~~~~iL~~l~~ 364 (898)
T KOG1051|consen 298 N-------------YGAIDAANLLKPLLARGGLWCIGATTLETYRKCIEKDPALERRWQLVLVPIPSVENLSLILPGLSE 364 (898)
T ss_pred c-------------chHHHHHHhhHHHHhcCCeEEEecccHHHHHHHHhhCcchhhCcceeEeccCcccchhhhhhhhhh
Confidence 4 2578999999984444469999999999999999999999997777777777532 121121
Q ss_pred ---------cccch------hhhccccCCcCCCcccccccchhhhhhhcccccchhhhHHHHhhhhcccCCCCCCCCCCh
Q 003038 390 ---------TTDSD------LQSQSTSKKAESGVSWLLFEGEEENKQLTCCADCSAKFEAEARSLQSSSCNSDSPTSSLP 454 (854)
Q Consensus 390 ---------~~~s~------~~~~~~~~~~~pdkaidlld~a~~~~~~~c~~~~~~~~e~e~~~~~~~~~~~~~~~~~lp 454 (854)
+.+++ ++.+|++.+++||+|+|++|+|++.++. ...++|
T Consensus 365 ~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aidl~dEa~a~~~~--------------------------~~~~lP 418 (898)
T KOG1051|consen 365 RYEVHHGVRISDESLFSAAQLSARYITLSFLPDCAIDLEDEAAALVKS--------------------------QAESLP 418 (898)
T ss_pred hhccccCCcccccccccccchhhhhcccCcCchhcccHHHHHHHHHhh--------------------------hhhhCC
Confidence 22322 4458999999999999999999877442 123699
Q ss_pred HHHHhhHHHHhhcccCCCcccchhhHHHHHHHHhhhcccCccccccccccccCCCCCCCCcccccccCcchhhhhhhhhc
Q 003038 455 AWLQQYKNEKKATLSNNDKDSGVRDLCKKWNSICNSIHKQPYYSERTLTFSSASPSSSTSGFSYDQQYPNFHKTHRDWAV 534 (854)
Q Consensus 455 ~~l~~~~~~~~~~~~~~d~~~~~~~L~~~w~~~~~~~~~~~~~~~~~~~~~s~~~~s~~~~~~~~~~~~~l~~~~~~~~~ 534 (854)
+|||.++..... .......|+++|+ ..+|+.+......-.+....| .. .+++. ...+..... .
T Consensus 419 ~wL~~~~~~~~~------~~~e~~~L~kk~d---~~~h~r~~~~~~~~~~~~~~~---l~-~~~~~-~~s~~~~l~---~ 481 (898)
T KOG1051|consen 419 PWLQNLERVDIK------LQDEISELQKKWN---QALHKRPSLESLAPSKPTQQP---LS-ASVDS-ERSVIEELK---L 481 (898)
T ss_pred HHHHhhhhhhhh------hHHHHHHHHHhhh---hhhcccccccccccccccccc---ch-hhhcc-chhHHhhhc---c
Confidence 999999854421 0111228999999 334543321110000000000 00 01111 000100000 0
Q ss_pred cccccchhcccc-ccccccccCCCCCcccccccccccccccccccCCCCCCCCCCccccccc--hhh----hhhhhhhHH
Q 003038 535 VEPKQSWREHHF-LFSHEASDKSTSEPSLRLYIPEHKDLKQPLSSNRNSTPNSTSSSDIMEM--EYV----HKFKELNSE 607 (854)
Q Consensus 535 ~~~~~p~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~v--~~~----~~~~~~~~e 607 (854)
. .+.+... . +...+...+.+.+.++...-.+ .... ..+ ..+..+++++..+ +|+ .++++.+.+
T Consensus 482 ~-~~~~~~~--~~~~k~~r~~d~~~~~~l~~~~~p-~~~~--~~~----~~~~~~~~~i~~~~s~~tgip~~~~~~~e~~ 551 (898)
T KOG1051|consen 482 K-KNSLDRN--SLLAKAHRPNDYTRETDLRYGRIP-DELS--EKS----NDNQGGESDISEVVSRWTGIPVDRLAEAEAE 551 (898)
T ss_pred c-cCCcccc--hhhhcccCCCCcchhhhccccccc-hhhh--hhc----ccccCCccchhhhhhhhcCCchhhhhhhHHH
Confidence 0 0000000 0 0001111111111111000000 0000 001 1122355567666 776 567788999
Q ss_pred HHHHHHHhhcCcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCc
Q 003038 608 NLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNN 687 (854)
Q Consensus 608 ~l~~L~~~L~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~ 687 (854)
+|+.|++.|.++|+||++||+.|+.+|.+||.|+.+| +|.+||||+||||||||+||++||..+||++++
T Consensus 552 ~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~gl~~~----------~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~ 621 (898)
T KOG1051|consen 552 RLKKLEERLHERVIGQDEAVAAIAAAIRRSRAGLKDP----------NPDAWFLFLGPDGVGKTELAKALAEYVFGSEEN 621 (898)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccCCC----------CCCeEEEEECCCchhHHHHHHHHHHHHcCCccc
Confidence 9999999999999999999999999999999999885 588999999999999999999999999999999
Q ss_pred eEEEccccccCcCCCccccccccccC-CCCCC-chHH--HHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEec
Q 003038 688 FVSIALSSFSSTRADSTEDSRNKRSR-DEQSC-SYIE--RFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVT 763 (854)
Q Consensus 688 ~i~id~s~~~~~~~~s~e~~~~~rl~-~~~g~-g~~e--~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d 763 (854)
||+||||+|+ + +++++ +|+|| ||.+ +|+|+|+++||+|||||||||||+++++.|+|+||+|+++|
T Consensus 622 ~IriDmse~~-------e---vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltD 691 (898)
T KOG1051|consen 622 FIRLDMSEFQ-------E---VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTD 691 (898)
T ss_pred eEEechhhhh-------h---hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcCcccc
Confidence 9999999999 5 78888 58899 9987 99999999999999999999999999999999999999999
Q ss_pred CCCceeecCCeEEEEecCCCCCCCCCC
Q 003038 764 SSGDEVSLGDAIVILSCESFSSRSRAC 790 (854)
Q Consensus 764 ~~G~~v~~~~aIiIlTsn~f~~~s~~~ 790 (854)
++|++|||+|||||||||...+....+
T Consensus 692 s~Gr~Vd~kN~I~IMTsn~~~~~i~~~ 718 (898)
T KOG1051|consen 692 SHGREVDFKNAIFIMTSNVGSSAIAND 718 (898)
T ss_pred CCCcEeeccceEEEEecccchHhhhcc
Confidence 999999999999999999876644444
No 3
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=100.00 E-value=1e-90 Score=844.66 Aligned_cols=655 Identities=19% Similarity=0.252 Sum_probs=487.9
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCcHHHHHHHHcCCChhhHHHHHHHHHHHhccCCCCCCCCCCCC
Q 003038 12 LTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALELCFNVALNRLPASTSTPMLGG 91 (854)
Q Consensus 12 fT~~a~~aL~~A~~~A~~~gh~~Vt~eHLLlaLL~~~~s~l~~iL~~~gvd~~~~~aL~~~l~~~L~rlp~~~~~~~~~~ 91 (854)
||+.++++|+.|+++|++++|++|+++|||++||.++++.+.++|..+|+++ +.|+..++..+.+.|.+.+ +
T Consensus 1 Lt~~a~~~L~~A~~~A~~~~h~~I~~eHLLlaLL~~~~~~~~~iL~~~Gvd~---~~Lr~~le~~l~~~p~~~~----~- 72 (852)
T TIGR03345 1 LNPTSRRALEQAAALCVARGHPEVELEHWLLALLDQPDSDLAAILRHFGVDL---GRLKADLARALDKLPRGNT----R- 72 (852)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHhccCcHHHHHHHHcCCCH---HHHHHHHHHHhccCCCCCC----C-
Confidence 6899999999999999999999999999999999998889999999999986 7899999999887775321 1
Q ss_pred CccChhHHHHHHHHHHHHHHHhhhCCcccccccccccccCHHHHHHHhccCC----hHHHHHHHh-CCCHHHHHHHHHHH
Q 003038 92 HCQFPTISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIELEQLIISILDDP----SVSRVMREA-GFSSTQVKSNVEQA 166 (854)
Q Consensus 92 ~~~~p~~s~~L~~al~~A~~~~~~~~~~~~~~~~~~~~I~~eHLLLALL~d~----~~~~iL~~~-Gi~~~~l~~~v~~~ 166 (854)
.+.+++.+..+++.|+.+... .+++ .+|+++|||+||++++ .+..++..+ |++.+.+...+.+.
T Consensus 73 ---~~~~S~~l~~vL~~A~~~~a~---~~g~-----~~I~teHLLlALl~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (852)
T TIGR03345 73 ---TPVFSPHLVELLQEAWLLASL---ELGD-----GRIRSGHLLLALLTDPELRRLLGSISPELAKIDREALREALPAL 141 (852)
T ss_pred ---CCCcCHHHHHHHHHHHHHHHH---HcCC-----CcccHHHHHHHHHccccchhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 244555566666666542110 1111 1599999999999975 245678887 99999888777642
Q ss_pred hhhhhccCCC-CCCCC---CcccccccccccccccccccCCCCCCCCC--cHHHHHHHHHHhhccCcCCceeecCCCCCH
Q 003038 167 VSLEICSQST-PVSSN---KSKESNVLVLSQTASATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASI 240 (854)
Q Consensus 167 l~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~ldpv--r~~ei~~v~~~L~r~~k~n~vLvGe~GvGK 240 (854)
..+....... .+... .......+.+.+|+.|+++.++.|++||+ |++||++++++|+|++||||||+|||||||
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGK 221 (852)
T TIGR03345 142 VEGSAEASAAAADAGPAAAAAGAAGTSALDQYTTDLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGK 221 (852)
T ss_pred hcCCccccccccccccccccccccchhhHHHHhhhHHHHhcCCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCH
Confidence 1210000000 00000 00011235788999999999999999998 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCcccCCceEEEccccccccc--chHHHHHHHHHHHHHHHhhhCCCeEEEeCccccc-ccccccc
Q 003038 241 EGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHM--NRVEVEQRVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSS 317 (854)
Q Consensus 241 ta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~--~rge~E~rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~ 317 (854)
|++|++||++|..|+||..|++.++++++++++.++ |+|+||+||+.++++++.. ++++||||||+|.+ ++|++.
T Consensus 222 Tal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~-~~~~ILfIDEih~l~~~g~~~- 299 (852)
T TIGR03345 222 TAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKAS-PQPIILFIDEAHTLIGAGGQA- 299 (852)
T ss_pred HHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhc-CCCeEEEEeChHHhccCCCcc-
Confidence 999999999999999999999999999999999975 9999999999999999865 57899999999999 887542
Q ss_pred ccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchhhhhccCCCCCCCchHHHHhh--------
Q 003038 318 EQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLETLWSLHPLTIPAGSLSLSLI-------- 389 (854)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~~~v~i~~~sl~~al~-------- 389 (854)
+.+|++++|+|...+|+++||||||++||++|++.||||.| |||.|.|++|+...+..
T Consensus 300 ------------~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~~i~v~eps~~~~~~iL~~~~~~ 365 (852)
T TIGR03345 300 ------------GQGDAANLLKPALARGELRTIAATTWAEYKKYFEKDPALTR--RFQVVKVEEPDEETAIRMLRGLAPV 365 (852)
T ss_pred ------------ccccHHHHhhHHhhCCCeEEEEecCHHHHhhhhhccHHHHH--hCeEEEeCCCCHHHHHHHHHHHHHh
Confidence 34678899988444557999999999999999999999999 99999999998655332
Q ss_pred --------cccch------hhhccccCCcCCCcccccccchhhhhhhcccccchhhhHHHHhhhhcccCCCCCCCCCChH
Q 003038 390 --------TTDSD------LQSQSTSKKAESGVSWLLFEGEEENKQLTCCADCSAKFEAEARSLQSSSCNSDSPTSSLPA 455 (854)
Q Consensus 390 --------~~~s~------~~~~~~~~~~~pdkaidlld~a~~~~~~~c~~~~~~~~e~e~~~~~~~~~~~~~~~~~lp~ 455 (854)
+++.+ ++.+|++++++|||||||||+||+.+.++-.. .. .++.. +..
T Consensus 366 ~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~~~~~~~~----~p-~~~~~--------------~~~ 426 (852)
T TIGR03345 366 LEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACARVALSQNA----TP-AALED--------------LRR 426 (852)
T ss_pred hhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHHHHHHHhccC----Cc-hhHHH--------------HHH
Confidence 22332 34589999999999999999998875532100 00 00000 111
Q ss_pred HHHhhHHHHhhcccCC----Ccc-c------------chh-hHHHHHHHHhhhcccCccccccccccccCCCCCCCCccc
Q 003038 456 WLQQYKNEKKATLSNN----DKD-S------------GVR-DLCKKWNSICNSIHKQPYYSERTLTFSSASPSSSTSGFS 517 (854)
Q Consensus 456 ~l~~~~~~~~~~~~~~----d~~-~------------~~~-~L~~~w~~~~~~~~~~~~~~~~~~~~~s~~~~s~~~~~~ 517 (854)
.+..++.+.......+ +.. . .++ .|..+|+..+..... ........... .. .
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~--~ 496 (852)
T TIGR03345 427 RIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQEKELVEA---ILALRAELEAD-----AD--A 496 (852)
T ss_pred HHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhc-----cc--c
Confidence 1111111110000000 000 0 000 455667655421110 00000000000 00 0
Q ss_pred ccccCcchhhhhhhhhccccccchhccccccccccccCCCCCcccccccccccccccccccCCCCCCCCCCccccccc--
Q 003038 518 YDQQYPNFHKTHRDWAVVEPKQSWREHHFLFSHEASDKSTSEPSLRLYIPEHKDLKQPLSSNRNSTPNSTSSSDIMEM-- 595 (854)
Q Consensus 518 ~~~~~~~l~~~~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~v-- 595 (854)
.+. ..++.. ..+|..+. ++.... ....+. ...|+.+++++|
T Consensus 497 ~~~-~~~~~~---------~~~~~~~~-~~~~~~--------------------~~~~~~------~~~v~~~~i~~vv~ 539 (852)
T TIGR03345 497 PAD-DDAALR---------AQLAELEA-ALASAQ--------------------GEEPLV------FPEVDAQAVAEVVA 539 (852)
T ss_pred hhh-hhHHHH---------HHHHHHHH-HHHHHh--------------------hccccc------cceecHHHHHHHHH
Confidence 000 000000 01111100 000000 000111 146778888888
Q ss_pred hhh----hhhhhhhHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHH
Q 003038 596 EYV----HKFKELNSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKE 671 (854)
Q Consensus 596 ~~~----~~~~~~~~e~l~~L~~~L~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt 671 (854)
+|| .++...+.++|.+|++.|.++|+||++|+..|+.+|.++++|+.+|+ ||.+||||+||+|||||
T Consensus 540 ~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~---------~p~~~~lf~Gp~GvGKT 610 (852)
T TIGR03345 540 DWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPR---------KPLGVFLLVGPSGVGKT 610 (852)
T ss_pred HHHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcCCCCCC---------CCceEEEEECCCCCCHH
Confidence 898 67888999999999999999999999999999999999999999875 89999999999999999
Q ss_pred HHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccC-CCCCC-chHH--HHHHHHHcCCCEEEEEecCCCCCHH
Q 003038 672 KIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSR-DEQSC-SYIE--RFAEAVSNNPHRVFLIEDVEQADYC 747 (854)
Q Consensus 672 ~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~-~~~g~-g~~e--~L~eav~~~p~~ViliDEieka~~~ 747 (854)
++|++||+.+|++...|+++||++|+ +.|++++++ .++|| ||.+ .|+++++++||+||+||||||+|++
T Consensus 611 ~lA~~La~~l~~~~~~~~~~dmse~~-------~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~ 683 (852)
T TIGR03345 611 ETALALAELLYGGEQNLITINMSEFQ-------EAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPD 683 (852)
T ss_pred HHHHHHHHHHhCCCcceEEEeHHHhh-------hhhhhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhcCHH
Confidence 99999999999999999999999999 888999998 57888 9976 7999999999999999999999999
Q ss_pred HHHHHHHhhhcCeEecCCCceeecCCeEEEEecCCC
Q 003038 748 SQKGFKRAIESGRIVTSSGDEVSLGDAIVILSCESF 783 (854)
Q Consensus 748 v~~~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn~f 783 (854)
+++.|+++|++|+++|+.|+.|+|+|+|||||||..
T Consensus 684 v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg 719 (852)
T TIGR03345 684 VLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAG 719 (852)
T ss_pred HHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCc
Confidence 999999999999999999999999999999999964
No 4
>CHL00095 clpC Clp protease ATP binding subunit
Probab=100.00 E-value=1.4e-89 Score=838.47 Aligned_cols=616 Identities=19% Similarity=0.281 Sum_probs=485.8
Q ss_pred hHHhhhHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCcHHHHHHHHcCCChhhHHHHHHHHHHHhccCCCCCCCC
Q 003038 8 IQQGLTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALELCFNVALNRLPASTSTP 87 (854)
Q Consensus 8 ~~~~fT~~a~~aL~~A~~~A~~~gh~~Vt~eHLLlaLL~~~~s~l~~iL~~~gvd~~~~~aL~~~l~~~L~rlp~~~~~~ 87 (854)
|+++||+.++++|..|+++|++++|.+|++||||++||.++.+.+.++|.++|+++ ..++..++..+.+.+... +
T Consensus 1 m~~rfT~~a~~vL~~A~~~A~~~~h~~V~~EHLLLaLL~~~~~~a~~iL~~~gid~---~~l~~~l~~~l~~~~~~~--~ 75 (821)
T CHL00095 1 MFERFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEGTGIAARALKSMGVTL---KDARIEVEKIIGRGTGFV--A 75 (821)
T ss_pred ChhhHhHHHHHHHHHHHHHHHHhCCCcCcHHHHHHHHHhCCCchHHHHHHHcCCCH---HHHHHHHHHHHhcCCCCC--c
Confidence 57899999999999999999999999999999999999999999999999999986 788888888876543211 0
Q ss_pred CCCCCccChhHHHHHHHHHHHHHHHhhhCCcccccccccccccCHHHHHHHhccCC--hHHHHHHHhCCCHHHHHHHHHH
Q 003038 88 MLGGHCQFPTISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIELEQLIISILDDP--SVSRVMREAGFSSTQVKSNVEQ 165 (854)
Q Consensus 88 ~~~~~~~~p~~s~~L~~al~~A~~~~~~~~~~~~~~~~~~~~I~~eHLLLALL~d~--~~~~iL~~~Gi~~~~l~~~v~~ 165 (854)
+.+++++.+.++|..|...|...++ . +|+++|||+||++++ .+.++|..+|++...++..+.+
T Consensus 76 --~~~~~S~~~~~vL~~A~~~A~~~~~----~---------~I~~eHLLlALL~~~ds~a~~iL~~~gvd~~~L~~~l~~ 140 (821)
T CHL00095 76 --VEIPFTPRAKRVLEMSLEEARDLGH----N---------YIGTEHLLLALLEEGEGVAARVLENLGVDLSKIRSLILN 140 (821)
T ss_pred --cccccCHHHHHHHHHHHHHHHHhCC----C---------cccHHHHHHHHHhCCCchHHHHHHHcCCCHHHHHHHHHH
Confidence 1234566666666666666655421 2 599999999999975 4678999999999999888775
Q ss_pred HhhhhhccCCCCCCCCCcccccccccccccccccccCCCCCCCCC--cHHHHHHHHHHhhccCcCCceeecCCCCCHHHH
Q 003038 166 AVSLEICSQSTPVSSNKSKESNVLVLSQTASATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGV 243 (854)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ldpv--r~~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~ 243 (854)
.+..... ...... ......+.+.+|+.|++..+++|++||+ |++||++++++|+|++||||||+||||||||++
T Consensus 141 ~l~~~~e--~~~~~~--~~~~~~~~l~~~~~~l~~~a~~~~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal 216 (821)
T CHL00095 141 LIGEIIE--AILGAE--QSRSKTPTLEEFGTNLTKEAIDGNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAI 216 (821)
T ss_pred Hhccccc--cccccc--cccccchHHHHHHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHH
Confidence 3321000 000000 0011234688999999999999999998 999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCcccCCceEEEccccccccc--chHHHHHHHHHHHHHHHhhhCCCeEEEeCccccc-cccccccccc
Q 003038 244 VRGVIDKIEKGDVPEALRDVKCLPLSISSFRHM--NRVEVEQRVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQV 320 (854)
Q Consensus 244 v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~--~rge~E~rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~ 320 (854)
|++||++|..++||..|++.+||+++++++++| |+||||+|++.++++++.. +++||||||||.| ++|.+.
T Consensus 217 ~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~--~~~ILfiDEih~l~~~g~~~---- 290 (821)
T CHL00095 217 AEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQEN--NNIILVIDEVHTLIGAGAAE---- 290 (821)
T ss_pred HHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhc--CCeEEEEecHHHHhcCCCCC----
Confidence 999999999999999999999999999999976 9999999999999999865 6899999999999 887532
Q ss_pred cccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchhhhhccCCCCCCCchHHHHh---h--------
Q 003038 321 RGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLETLWSLHPLTIPAGSLSLSL---I-------- 389 (854)
Q Consensus 321 ~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~~~v~i~~~sl~~al---~-------- 389 (854)
+.++++++|+|...+|+|+||||||+++|++|++.||+|++ +|++|.+++++..... +
T Consensus 291 ---------g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~~I~v~ep~~~e~~aILr~l~~~~e~ 359 (821)
T CHL00095 291 ---------GAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALER--RFQPVYVGEPSVEETIEILFGLRSRYEK 359 (821)
T ss_pred ---------CcccHHHHhHHHHhCCCcEEEEeCCHHHHHHHHhcCHHHHh--cceEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 33588999988434447999999999999999999999999 9999999988743321 1
Q ss_pred -----cccch------hhhccccCCcCCCcccccccchhhhhhhcccccchhhhHHHHhhhhcccCCCCCCCCCChHHHH
Q 003038 390 -----TTDSD------LQSQSTSKKAESGVSWLLFEGEEENKQLTCCADCSAKFEAEARSLQSSSCNSDSPTSSLPAWLQ 458 (854)
Q Consensus 390 -----~~~s~------~~~~~~~~~~~pdkaidlld~a~~~~~~~c~~~~~~~~e~e~~~~~~~~~~~~~~~~~lp~~l~ 458 (854)
+.+.. ++.+|+++|++|||||||||+|++.+++. ..+.|..++
T Consensus 360 ~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a~~~~~--------------------------~~~~~~~~~ 413 (821)
T CHL00095 360 HHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGSRVRLI--------------------------NSRLPPAAR 413 (821)
T ss_pred HcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHHHHHhh--------------------------ccCCchhHH
Confidence 12222 34589999999999999999998774421 013454444
Q ss_pred hhHHHHhhc-------ccCCCcccchhhHHHHHHHHhhhcccCccccccccccccCCCCCCCCcccccccCcchhhhhhh
Q 003038 459 QYKNEKKAT-------LSNNDKDSGVRDLCKKWNSICNSIHKQPYYSERTLTFSSASPSSSTSGFSYDQQYPNFHKTHRD 531 (854)
Q Consensus 459 ~~~~~~~~~-------~~~~d~~~~~~~L~~~w~~~~~~~~~~~~~~~~~~~~~s~~~~s~~~~~~~~~~~~~l~~~~~~ 531 (854)
.++.+...+ ....+-+.. ..++.++..+ ...+......
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----------------------------------~~~~~~~~~~ 458 (821)
T CHL00095 414 ELDKELREILKDKDEAIREQDFETA-KQLRDREMEV----------------------------------RAQIAAIIQS 458 (821)
T ss_pred HHHHHHHHHHHHHHHHHhCcchHHH-HHHHHHHHHH----------------------------------HHHHHHHHHH
Confidence 443222110 000000000 0000000000 0001110011
Q ss_pred hhccccccchhccccccccccccCCCCCcccccccccccccccccccCCCCCCCCCCccccccc--hhh----hhhhhhh
Q 003038 532 WAVVEPKQSWREHHFLFSHEASDKSTSEPSLRLYIPEHKDLKQPLSSNRNSTPNSTSSSDIMEM--EYV----HKFKELN 605 (854)
Q Consensus 532 ~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~v--~~~----~~~~~~~ 605 (854)
|.-.. . ... ....|+.+++++| +|| .++.+.+
T Consensus 459 ~~~~~---------------~---------------------~~~------~~~~v~~~~i~~~~~~~tgip~~~~~~~~ 496 (821)
T CHL00095 459 KKTEE---------------E---------------------KRL------EVPVVTEEDIAEIVSAWTGIPVNKLTKSE 496 (821)
T ss_pred HHhhh---------------c---------------------ccc------cCCccCHHHHHHHHHHHHCCCchhhchhH
Confidence 21100 0 000 0145677778887 887 6788899
Q ss_pred HHHHHHHHHhhcCcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCC
Q 003038 606 SENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSH 685 (854)
Q Consensus 606 ~e~l~~L~~~L~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~ 685 (854)
.++|.+|++.|.++|+||++|+..|+.+|.++++|+.+++ ||.++|||+||+|||||++|++||+.+||+.
T Consensus 497 ~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~---------~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~ 567 (821)
T CHL00095 497 SEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPN---------RPIASFLFSGPTGVGKTELTKALASYFFGSE 567 (821)
T ss_pred HHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhcccCCC---------CCceEEEEECCCCCcHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999999999999998875 8999999999999999999999999999999
Q ss_pred CceEEEccccccCcCCCccccccccccC-CCCCC-chHH--HHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeE
Q 003038 686 NNFVSIALSSFSSTRADSTEDSRNKRSR-DEQSC-SYIE--RFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRI 761 (854)
Q Consensus 686 ~~~i~id~s~~~~~~~~s~e~~~~~rl~-~~~g~-g~~e--~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l 761 (854)
.+++++||++|. +.|.+++++ .|+|| ||.+ .|+++++++||+|||||||||||+++++.|+++||+|++
T Consensus 568 ~~~~~~d~s~~~-------~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~ 640 (821)
T CHL00095 568 DAMIRLDMSEYM-------EKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRL 640 (821)
T ss_pred cceEEEEchhcc-------ccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCce
Confidence 999999999999 788888888 47888 8876 799999999999999999999999999999999999999
Q ss_pred ecCCCceeecCCeEEEEecCCC
Q 003038 762 VTSSGDEVSLGDAIVILSCESF 783 (854)
Q Consensus 762 ~d~~G~~v~~~~aIiIlTsn~f 783 (854)
+|+.|+.|+|+|+|||||||..
T Consensus 641 ~d~~g~~v~~~~~i~I~Tsn~g 662 (821)
T CHL00095 641 TDSKGRTIDFKNTLIIMTSNLG 662 (821)
T ss_pred ecCCCcEEecCceEEEEeCCcc
Confidence 9999999999999999999964
No 5
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=100.00 E-value=1.6e-85 Score=804.93 Aligned_cols=656 Identities=22% Similarity=0.320 Sum_probs=491.5
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCcHHHHHHHHcCCChhhHHHHHHHHHHHhccCCCCCCCCCCCC
Q 003038 12 LTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALELCFNVALNRLPASTSTPMLGG 91 (854)
Q Consensus 12 fT~~a~~aL~~A~~~A~~~gh~~Vt~eHLLlaLL~~~~s~l~~iL~~~gvd~~~~~aL~~~l~~~L~rlp~~~~~~~~~~ 91 (854)
||+.++.+|..|+++|++++|.+|+++|||++|+.+++|.+.++|.++|+++ +.++..+...+.+.|...+.+ +.
T Consensus 1 fT~~a~~vL~~A~~~A~~~~h~~V~~EHLLlaLl~~~~g~a~~iL~~~Gvd~---~~l~~~l~~~l~~~~~~~~~~--~~ 75 (852)
T TIGR03346 1 FTEKFQEALQAAQSLALGRDHQQIEPEHLLKALLDQEGGLARRLLQKAGVNV---GALRQALEKELEKLPKVSGPG--GQ 75 (852)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCccHHHHHHHHcCCCH---HHHHHHHHHHhcccccCCCCC--CC
Confidence 7999999999999999999999999999999999999999999999999986 789999999888776533211 23
Q ss_pred CccChhHHHHHHHHHHHHHHHhhhCCcccccccccccccCHHHHHHHhccCC-hHHHHHHHhCCCHHHHHHHHHHHhhhh
Q 003038 92 HCQFPTISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIELEQLIISILDDP-SVSRVMREAGFSSTQVKSNVEQAVSLE 170 (854)
Q Consensus 92 ~~~~p~~s~~L~~al~~A~~~~~~~~~~~~~~~~~~~~I~~eHLLLALL~d~-~~~~iL~~~Gi~~~~l~~~v~~~l~~~ 170 (854)
++++|.+.++|+.|...|...+ .+ +|+++|||+||++++ .+.++|..+|++.+.++..+.+ +.+
T Consensus 76 ~~~S~~~~~vLe~A~~~A~~~g----~~---------~I~teHLLlALl~e~~~a~~iL~~~gi~~~~l~~~l~~-~~~- 140 (852)
T TIGR03346 76 VYLSPELNRLLNLAEKLAQKRG----DE---------FISSEHLLLALLDDKGTLGKLLKEAGATADALEAAINA-VRG- 140 (852)
T ss_pred CCcCHHHHHHHHHHHHHHHHcC----CC---------cccHHHHHHHHHcCCccHHHHHHHcCCCHHHHHHHHHh-hcc-
Confidence 4456666666666666665432 12 599999999999985 4568999999999999877763 221
Q ss_pred hccCCCCCCCCCcccccccccccccccccccCCCCCCCCC--cHHHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHH
Q 003038 171 ICSQSTPVSSNKSKESNVLVLSQTASATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVI 248 (854)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ldpv--r~~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la 248 (854)
+....... .....+.+.+|+.++++.++.|++||+ |++||++++++|+|++||||||+||||||||++|++||
T Consensus 141 --~~~~~~~~---~~~~~~~l~~~~~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la 215 (852)
T TIGR03346 141 --GQKVTSAN---AEDQYEALEKYARDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLA 215 (852)
T ss_pred --Cccccccc---cccchhHHHHHhhhHHHHhhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHH
Confidence 11111000 011235789999999999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHcCCCCcccCCceEEEccccccccc--chHHHHHHHHHHHHHHHhhhCCCeEEEeCccccc-cccccccccccccch
Q 003038 249 DKIEKGDVPEALRDVKCLPLSISSFRHM--NRVEVEQRVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYC 325 (854)
Q Consensus 249 ~~i~~~~vp~~L~~~~~~~l~~~~l~~~--~rge~E~rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~ 325 (854)
++|..|+||..|++.+++.++++++.++ |+|+||++++.+++++... ++++||||||||.| ++|.+.
T Consensus 216 ~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~-~~~~ILfIDEih~l~~~g~~~--------- 285 (852)
T TIGR03346 216 QRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKS-EGQIILFIDELHTLVGAGKAE--------- 285 (852)
T ss_pred HHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhc-CCCeEEEeccHHHhhcCCCCc---------
Confidence 9999999999999999999999999876 9999999999999999765 56899999999999 877542
Q ss_pred hhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchhhhhccCCCCCCCchHHHHhh----------------
Q 003038 326 SIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLETLWSLHPLTIPAGSLSLSLI---------------- 389 (854)
Q Consensus 326 ~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~~~v~i~~~sl~~al~---------------- 389 (854)
+.++++++|+|...+|++.||||||.++|++|++.||+|+| ||++|.|++|+....+.
T Consensus 286 ----~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~ 359 (852)
T TIGR03346 286 ----GAMDAGNMLKPALARGELHCIGATTLDEYRKYIEKDAALER--RFQPVFVDEPTVEDTISILRGLKERYEVHHGVR 359 (852)
T ss_pred ----chhHHHHHhchhhhcCceEEEEeCcHHHHHHHhhcCHHHHh--cCCEEEeCCCCHHHHHHHHHHHHHHhccccCCC
Confidence 45789999988444457999999999999999999999999 99999999998655432
Q ss_pred cccch------hhhccccCCcCCCcccccccchhhhhhhcccccchhhhHHHHhhhhcccCCCCCCCCCChHHHHhh---
Q 003038 390 TTDSD------LQSQSTSKKAESGVSWLLFEGEEENKQLTCCADCSAKFEAEARSLQSSSCNSDSPTSSLPAWLQQY--- 460 (854)
Q Consensus 390 ~~~s~------~~~~~~~~~~~pdkaidlld~a~~~~~~~c~~~~~~~~e~e~~~~~~~~~~~~~~~~~lp~~l~~~--- 460 (854)
+.+.+ ++++|+++|++|||||||||+||+++++.- ...|..++.+
T Consensus 360 ~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~~~~~~--------------------------~~~~~~~~~~~~~ 413 (852)
T TIGR03346 360 ITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAARIRMEI--------------------------DSKPEELDELDRR 413 (852)
T ss_pred CCHHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHhhc--------------------------cCCchhHHHHHHH
Confidence 12222 456999999999999999999988855310 0122222222
Q ss_pred ----HHHHhhcccCCCcccc---------------h-hhHHHHHHHHhhhcccCccccccccccccCCCCCCCCcccccc
Q 003038 461 ----KNEKKATLSNNDKDSG---------------V-RDLCKKWNSICNSIHKQPYYSERTLTFSSASPSSSTSGFSYDQ 520 (854)
Q Consensus 461 ----~~~~~~~~~~~d~~~~---------------~-~~L~~~w~~~~~~~~~~~~~~~~~~~~~s~~~~s~~~~~~~~~ 520 (854)
+.+........+.... + ..+...|......+.....+.+. +..... ... ..+.
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~--~~~~ 486 (852)
T TIGR03346 414 IIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAEKAAIQGIQQIKEE-IEQVRL----ELE--QAER 486 (852)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH----HHH--HHHh
Confidence 1111111000010000 0 03455565543221110000000 000000 000 0000
Q ss_pred cCcchhhhhhhhhccccccchhccccccccccccCCCCCcccccccccccccccccccCCCCCCCCCCccccccc--hhh
Q 003038 521 QYPNFHKTHRDWAVVEPKQSWREHHFLFSHEASDKSTSEPSLRLYIPEHKDLKQPLSSNRNSTPNSTSSSDIMEM--EYV 598 (854)
Q Consensus 521 ~~~~l~~~~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~v--~~~ 598 (854)
..++....+ +.....|...+ .+...+.... + .....+. ...|+.++++.| +||
T Consensus 487 -~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~------------~--~~~~~l~------~~~v~~~~i~~v~~~~t 541 (852)
T TIGR03346 487 -EGDLAKAAE---LQYGKLPELEK-RLQAAEAKLG------------E--ETKPRLL------REEVTAEEIAEVVSRWT 541 (852)
T ss_pred -hhhHHHHHH---hhhcchHHHHH-HHHHHHHHhh------------h--ccccccc------cCCcCHHHHHHHHHHhc
Confidence 000000000 00001111100 0000000000 0 0001111 145777888888 787
Q ss_pred ----hhhhhhhHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHH
Q 003038 599 ----HKFKELNSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIA 674 (854)
Q Consensus 599 ----~~~~~~~~e~l~~L~~~L~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lA 674 (854)
.++.+.+.++|.+|++.|.++|+||++||..|+.+|.++++|+.+|+ ||.++|||+||+|||||++|
T Consensus 542 gip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~---------~p~~~~Lf~Gp~GvGKt~lA 612 (852)
T TIGR03346 542 GIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPN---------RPIGSFLFLGPTGVGKTELA 612 (852)
T ss_pred CCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhccCCCCC---------CCCeEEEEEcCCCCCHHHHH
Confidence 56788899999999999999999999999999999999999999875 88999999999999999999
Q ss_pred HHHHHHHhCCCCceEEEccccccCcCCCccccccccccC-CCCCC-chHH--HHHHHHHcCCCEEEEEecCCCCCHHHHH
Q 003038 675 KELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSR-DEQSC-SYIE--RFAEAVSNNPHRVFLIEDVEQADYCSQK 750 (854)
Q Consensus 675 r~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~-~~~g~-g~~e--~L~eav~~~p~~ViliDEieka~~~v~~ 750 (854)
++||+.+|++..+|+++||++|. +.+.+++++ +++|| ||.+ .|+++++++|++|||||||||+|+++|+
T Consensus 613 ~~La~~l~~~~~~~i~~d~s~~~-------~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~ 685 (852)
T TIGR03346 613 KALAEFLFDDEDAMVRIDMSEYM-------EKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFN 685 (852)
T ss_pred HHHHHHhcCCCCcEEEEechhhc-------ccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHH
Confidence 99999999999999999999998 788888887 47888 9976 8999999999999999999999999999
Q ss_pred HHHHhhhcCeEecCCCceeecCCeEEEEecCC
Q 003038 751 GFKRAIESGRIVTSSGDEVSLGDAIVILSCES 782 (854)
Q Consensus 751 ~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn~ 782 (854)
.|+++|++|+++|+.|+.++|+|+|||||||.
T Consensus 686 ~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~ 717 (852)
T TIGR03346 686 VLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 717 (852)
T ss_pred HHHHHHhcCceecCCCeEEecCCcEEEEeCCc
Confidence 99999999999999999999999999999995
No 6
>PRK10865 protein disaggregation chaperone; Provisional
Probab=100.00 E-value=2.7e-85 Score=799.59 Aligned_cols=657 Identities=20% Similarity=0.285 Sum_probs=494.7
Q ss_pred chHHhhhHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCcHHHHHHHHcCCChhhHHHHHHHHHHHhccCCCCCCC
Q 003038 7 TIQQGLTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALELCFNVALNRLPASTST 86 (854)
Q Consensus 7 ~~~~~fT~~a~~aL~~A~~~A~~~gh~~Vt~eHLLlaLL~~~~s~l~~iL~~~gvd~~~~~aL~~~l~~~L~rlp~~~~~ 86 (854)
|++++||+.++.+|+.|+.+|++++|.+|+++|||++|+.++.+.+..+|.++|++. ..|+..++..+.+.|...++
T Consensus 1 ~~~~~~~~~~~~~l~~a~~~a~~~~~~~~~~~hll~~l~~~~~~~~~~~l~~~~~~~---~~l~~~~~~~~~~~~~~~~~ 77 (857)
T PRK10865 1 MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVRPLLTSAGINA---GQLRTDINQALSRLPQVEGT 77 (857)
T ss_pred CChHHhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCccHHHHHHHHcCCCH---HHHHHHHHHHHhhCCCCCCC
Confidence 357899999999999999999999999999999999999999899999999999986 79999999999887753221
Q ss_pred CCCCCCccChhHHHHHHHHHHHHHHHhhhCCcccccccccccccCHHHHHHHhccCC-hHHHHHHHhCCCHHHHHHHHHH
Q 003038 87 PMLGGHCQFPTISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIELEQLIISILDDP-SVSRVMREAGFSSTQVKSNVEQ 165 (854)
Q Consensus 87 ~~~~~~~~~p~~s~~L~~al~~A~~~~~~~~~~~~~~~~~~~~I~~eHLLLALL~d~-~~~~iL~~~Gi~~~~l~~~v~~ 165 (854)
+ ..+.++..+..+++.|+.+++..+.. +|+++|||+|++.++ ....+|..+|++.+.++..+.+
T Consensus 78 ~------~~~~~~~~~~~~l~~a~~~~~~~~~~---------~i~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 142 (857)
T PRK10865 78 G------GDVQPSQDLVRVLNLCDKLAQKRGDN---------FISSELFVLAALESRGTLADILKAAGATTANITQAIEQ 142 (857)
T ss_pred C------CCCCcCHHHHHHHHHHHHHHHHcCCC---------cccHHHHHHHHHcCcchHHHHHHHcCCCHHHHHHHHHH
Confidence 1 12445555556666666554322212 599999999999985 4567899999999999877653
Q ss_pred HhhhhhccCCCCCCCCCcccccccccccccccccccCCCCCCCCC--cHHHHHHHHHHhhccCcCCceeecCCCCCHHHH
Q 003038 166 AVSLEICSQSTPVSSNKSKESNVLVLSQTASATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGV 243 (854)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ldpv--r~~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~ 243 (854)
+.+ ........+ ....+.+.+|+.++++.++.|++||| |+.||+++++||+||+|+||||+||||||||++
T Consensus 143 -~~~----~~~~~~~~~--~~~~~~l~~~~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l 215 (857)
T PRK10865 143 -MRG----GESVNDQGA--EDQRQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAI 215 (857)
T ss_pred -hhc----ccccccccc--ccchhHHHHHhhhHHHHHhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHH
Confidence 221 110000000 11235789999999999999999998 999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCcccCCceEEEccccccccc--chHHHHHHHHHHHHHHHhhhCCCeEEEeCccccc-cccccccccc
Q 003038 244 VRGVIDKIEKGDVPEALRDVKCLPLSISSFRHM--NRVEVEQRVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQV 320 (854)
Q Consensus 244 v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~--~rge~E~rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~ 320 (854)
|++||+++..|+||..|++.+++.+++++++++ |+|+||+|++.+++++... ++++||||||+|.| ++|.+.
T Consensus 216 ~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~-~~~~ILfIDEih~l~~~~~~~---- 290 (857)
T PRK10865 216 VEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQ-EGNVILFIDELHTMVGAGKAD---- 290 (857)
T ss_pred HHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHc-CCCeEEEEecHHHhccCCCCc----
Confidence 999999999999999999999999999999876 9999999999999998765 57899999999999 887542
Q ss_pred cccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchhhhhccCCCCCCCchHHHHhh-----------
Q 003038 321 RGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLETLWSLHPLTIPAGSLSLSLI----------- 389 (854)
Q Consensus 321 ~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~~~v~i~~~sl~~al~----------- 389 (854)
+.++++++|+|...+|+|+||||||+++|++|++.||+|+| |||.|.|++|+...++.
T Consensus 291 ---------~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~~i~v~eP~~~~~~~iL~~l~~~~e~ 359 (857)
T PRK10865 291 ---------GAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALER--RFQKVFVAEPSVEDTIAILRGLKERYEL 359 (857)
T ss_pred ---------cchhHHHHhcchhhcCCCeEEEcCCCHHHHHHhhhcHHHHh--hCCEEEeCCCCHHHHHHHHHHHhhhhcc
Confidence 45789999998544558999999999999999999999999 99999999998655432
Q ss_pred -----cccc------hhhhccccCCcCCCcccccccchhhhhhhcccccchhhhHHHHhhhhcccCCCCCCCCCChHHHH
Q 003038 390 -----TTDS------DLQSQSTSKKAESGVSWLLFEGEEENKQLTCCADCSAKFEAEARSLQSSSCNSDSPTSSLPAWLQ 458 (854)
Q Consensus 390 -----~~~s------~~~~~~~~~~~~pdkaidlld~a~~~~~~~c~~~~~~~~e~e~~~~~~~~~~~~~~~~~lp~~l~ 458 (854)
+.+. +++++|++++++||||++|+|.+++.+.+.- .+.|..|+
T Consensus 360 ~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~LiD~aaa~~rl~~--------------------------~~kp~~L~ 413 (857)
T PRK10865 360 HHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQI--------------------------DSKPEELD 413 (857)
T ss_pred CCCCCcCHHHHHHHHHHhhccccCCCCChHHHHHHHHHhccccccc--------------------------ccChHHHH
Confidence 1222 2566999999999999999999877744310 11222222
Q ss_pred -------hhHHHHhhcccCCCcc---------------cchh-hHHHHHHHHhhhcccCcccc-ccc-cccccCCCCCCC
Q 003038 459 -------QYKNEKKATLSNNDKD---------------SGVR-DLCKKWNSICNSIHKQPYYS-ERT-LTFSSASPSSST 513 (854)
Q Consensus 459 -------~~~~~~~~~~~~~d~~---------------~~~~-~L~~~w~~~~~~~~~~~~~~-~~~-~~~~s~~~~s~~ 513 (854)
.++.+...+....+.. ..+. .|+.+|..+...+....... +.. +.. .+
T Consensus 414 rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~~L~eq~k~~k~el~~~~~~~~ele~l~~-------ki 486 (857)
T PRK10865 414 RLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKI-------AI 486 (857)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HH
Confidence 1111111110000000 0001 36777776643321100000 000 000 00
Q ss_pred CcccccccCcchhhhhhhhhccccccchhccccccccccccCCCCCcccccccccccccccccccCCCCCCCCCCccccc
Q 003038 514 SGFSYDQQYPNFHKTHRDWAVVEPKQSWREHHFLFSHEASDKSTSEPSLRLYIPEHKDLKQPLSSNRNSTPNSTSSSDIM 593 (854)
Q Consensus 514 ~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~ 593 (854)
. ..+. ..+.....+ +....+|...+ ++...+.. ......++. ..|+.++++
T Consensus 487 e--~a~~-~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~----------------~~~~~~~~~------~~v~~~~i~ 537 (857)
T PRK10865 487 E--QARR-VGDLARMSE---LQYGKIPELEK-QLAAATQL----------------EGKTMRLLR------NKVTDAEIA 537 (857)
T ss_pred H--HHHh-hhhhhhHHH---hhhhhhHHHHH-HHHHHHhh----------------hcccccccc------CccCHHHHH
Confidence 0 0000 000000000 00001111100 00000000 000011221 568888898
Q ss_pred cc--hhh----hhhhhhhHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCC
Q 003038 594 EM--EYV----HKFKELNSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDA 667 (854)
Q Consensus 594 ~v--~~~----~~~~~~~~e~l~~L~~~L~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~G 667 (854)
.| +|| .++.+.+.++|..|++.|.++|+||+.|+..|..+|.++++|+.+|+ ||.++|||+||+|
T Consensus 538 ~vv~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~---------~p~~~~Lf~Gp~G 608 (857)
T PRK10865 538 EVLARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPN---------RPIGSFLFLGPTG 608 (857)
T ss_pred HHHHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhcccCCC---------CCCceEEEECCCC
Confidence 88 998 77889999999999999999999999999999999999999999875 7889999999999
Q ss_pred chHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccC-CCCCC-chHH--HHHHHHHcCCCEEEEEecCCC
Q 003038 668 DAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSR-DEQSC-SYIE--RFAEAVSNNPHRVFLIEDVEQ 743 (854)
Q Consensus 668 vGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~-~~~g~-g~~e--~L~eav~~~p~~ViliDEiek 743 (854)
||||++|++||+.+|++...|+++||++|. +.+..++++ .++|| ||.+ .|+++++.+|++|||||||||
T Consensus 609 ~GKT~lA~aLa~~l~~~~~~~i~id~se~~-------~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEiek 681 (857)
T PRK10865 609 VGKTELCKALANFMFDSDDAMVRIDMSEFM-------EKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEK 681 (857)
T ss_pred CCHHHHHHHHHHHhhcCCCcEEEEEhHHhh-------hhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhh
Confidence 999999999999999998999999999998 677777877 47788 8875 799999999999999999999
Q ss_pred CCHHHHHHHHHhhhcCeEecCCCceeecCCeEEEEecCC
Q 003038 744 ADYCSQKGFKRAIESGRIVTSSGDEVSLGDAIVILSCES 782 (854)
Q Consensus 744 a~~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn~ 782 (854)
+|+++|+.|+++|++|+++|+.|++++|+|+|||||||.
T Consensus 682 a~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~ 720 (857)
T PRK10865 682 AHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL 720 (857)
T ss_pred CCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCc
Confidence 999999999999999999999999999999999999985
No 7
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=5.4e-82 Score=763.96 Aligned_cols=569 Identities=17% Similarity=0.241 Sum_probs=453.6
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCcHHHHHHHHcCCChhhHHHHHHHHHHHhc-cCCCCCCCCCCC
Q 003038 12 LTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALELCFNVALN-RLPASTSTPMLG 90 (854)
Q Consensus 12 fT~~a~~aL~~A~~~A~~~gh~~Vt~eHLLlaLL~~~~s~l~~iL~~~gvd~~~~~aL~~~l~~~L~-rlp~~~~~~~~~ 90 (854)
||+.++++|..|+++|++++|.+|++||||++||.++. ..++|.++|+++ +.+++.+...+. .+|...+.. .+
T Consensus 1 ~~~~a~~~L~~A~~~A~~~~h~~V~~EHLLlaLL~~~~--~~~iL~~~gid~---~~l~~~l~~~l~~~~p~~~~~~-~~ 74 (731)
T TIGR02639 1 ISEELERILDAALEEAKKRRHEFVTLEHILLALLFDSD--AIEILEECGGDV---EALRKDLEDYLENNLPSITEEN-EA 74 (731)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCcCcHHHHHHHHHcCch--HHHHHHHcCCCH---HHHHHHHHHHHhhcCCCCCCCC-CC
Confidence 68999999999999999999999999999999999876 568999999986 789999988887 555432110 12
Q ss_pred CCccChhHHHHHHHHHHHHHHHhhhCCcccccccccccccCHHHHHHHhccCC--hHHHHHHHhCCCHHHHHHHHHHHhh
Q 003038 91 GHCQFPTISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIELEQLIISILDDP--SVSRVMREAGFSSTQVKSNVEQAVS 168 (854)
Q Consensus 91 ~~~~~p~~s~~L~~al~~A~~~~~~~~~~~~~~~~~~~~I~~eHLLLALL~d~--~~~~iL~~~Gi~~~~l~~~v~~~l~ 168 (854)
.+++++.+.+.|+.|.+.|..+++ + +|+++|||+||++++ .+.++|..+|++.+.+...+.....
T Consensus 75 ~~~~S~~lk~vL~~A~~~A~~~g~----~---------~I~teHLLLALl~~~~~~a~~lL~~~gi~~~~l~~~l~~~~~ 141 (731)
T TIGR02639 75 DPEQTVGVQRVLQRALLHVKSAGK----K---------EIGIGDILVALFDEEDSHASYFLKSQGITRLDILEYISHGIP 141 (731)
T ss_pred CCCcCHHHHHHHHHHHHHHHHcCC----C---------ccCHHHHHHHHhcCcccHHHHHHHHcCCCHHHHHHHHHhhcc
Confidence 344566666666666666655421 2 599999999999974 4567999999999988776652111
Q ss_pred hhhccCCCCCCCC-CcccccccccccccccccccCCCCCCCCC--cHHHHHHHHHHhhccCcCCceeecCCCCCHHHHHH
Q 003038 169 LEICSQSTPVSSN-KSKESNVLVLSQTASATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVR 245 (854)
Q Consensus 169 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~ldpv--r~~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~ 245 (854)
............. .......+.+++|+.++++.++.|++||+ |++||++++++|+|++|+||||+||||||||++|+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~ 221 (731)
T TIGR02639 142 KDDGKNRDAEEAGKEEAKKQEDALEKYTVDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAE 221 (731)
T ss_pred cccccccccccccccccccchhHHHHHhhhHHHHHhcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHH
Confidence 0000000000000 00001234688999999999999999998 99999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCcccCCceEEEccccccccc--chHHHHHHHHHHHHHHHhhhCCCeEEEeCccccc-cccccccccccc
Q 003038 246 GVIDKIEKGDVPEALRDVKCLPLSISSFRHM--NRVEVEQRVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRG 322 (854)
Q Consensus 246 ~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~--~rge~E~rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~ 322 (854)
+||++|..++||..|++.+|++++++++.++ |+|+||+|+++++++++.. +++||||||||.| ++|...
T Consensus 222 ~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~--~~~ILfiDEih~l~~~g~~~------ 293 (731)
T TIGR02639 222 GLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKE--PNAILFIDEIHTIVGAGATS------ 293 (731)
T ss_pred HHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhcc--CCeEEEEecHHHHhccCCCC------
Confidence 9999999999999999999999999999975 9999999999999999875 5899999999999 876532
Q ss_pred cchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchhhhhccCCCCCCCchHHHHhh-------------
Q 003038 323 YYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLETLWSLHPLTIPAGSLSLSLI------------- 389 (854)
Q Consensus 323 ~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~~~v~i~~~sl~~al~------------- 389 (854)
.+.++++++|+|...+|+|.||||||++||++|++.||+|.| ||+.|.|++++......
T Consensus 294 ------~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~~i~v~~p~~~~~~~il~~~~~~~e~~~ 365 (731)
T TIGR02639 294 ------GGSMDASNLLKPALSSGKLRCIGSTTYEEYKNHFEKDRALSR--RFQKIDVGEPSIEETVKILKGLKEKYEEFH 365 (731)
T ss_pred ------CccHHHHHHHHHHHhCCCeEEEEecCHHHHHHHhhhhHHHHH--hCceEEeCCCCHHHHHHHHHHHHHHHHhcc
Confidence 134678899987333447999999999999999999999999 99999999998554332
Q ss_pred ---cccch------hhhccccCCcCCCcccccccchhhhhhhcccccchhhhHHHHhhhhcccCCCCCCCCCChHHHHhh
Q 003038 390 ---TTDSD------LQSQSTSKKAESGVSWLLFEGEEENKQLTCCADCSAKFEAEARSLQSSSCNSDSPTSSLPAWLQQY 460 (854)
Q Consensus 390 ---~~~s~------~~~~~~~~~~~pdkaidlld~a~~~~~~~c~~~~~~~~e~e~~~~~~~~~~~~~~~~~lp~~l~~~ 460 (854)
+.+.+ ++.+|++++++|||||||+|+|++.+.+ .. . ..+
T Consensus 366 ~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~--------~~-----------~-------~~~------ 413 (731)
T TIGR02639 366 HVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGASFRL--------RP-----------K-------AKK------ 413 (731)
T ss_pred CcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhhhhhc--------Cc-----------c-------ccc------
Confidence 22222 3458999999999999999998665221 00 0 000
Q ss_pred HHHHhhcccCCCcccchhhHHHHHHHHhhhcccCccccccccccccCCCCCCCCcccccccCcchhhhhhhhhccccccc
Q 003038 461 KNEKKATLSNNDKDSGVRDLCKKWNSICNSIHKQPYYSERTLTFSSASPSSSTSGFSYDQQYPNFHKTHRDWAVVEPKQS 540 (854)
Q Consensus 461 ~~~~~~~~~~~d~~~~~~~L~~~w~~~~~~~~~~~~~~~~~~~~~s~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~p 540 (854)
. . .+. ..++......|. .+|
T Consensus 414 ---~---------~-------------------------------------~v~-------~~~i~~~i~~~t----giP 433 (731)
T TIGR02639 414 ---K---------A-------------------------------------NVS-------VKDIENVVAKMA----HIP 433 (731)
T ss_pred ---c---------c-------------------------------------ccC-------HHHHHHHHHHHh----CCC
Confidence 0 0 000 011111111111 112
Q ss_pred hhccccccccccccCCCCCcccccccccccccccccccCCCCCCCCCCccccccchhhhhhhhhhHHHHHHHHHhhcCcc
Q 003038 541 WREHHFLFSHEASDKSTSEPSLRLYIPEHKDLKQPLSSNRNSTPNSTSSSDIMEMEYVHKFKELNSENLTSLCNALEKKV 620 (854)
Q Consensus 541 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~e~l~~L~~~L~~~V 620 (854)
+ .++...+.++|..|++.|.++|
T Consensus 434 ~---------------------------------------------------------~~~~~~~~~~l~~l~~~l~~~v 456 (731)
T TIGR02639 434 V---------------------------------------------------------KTVSVDDREKLKNLEKNLKAKI 456 (731)
T ss_pred h---------------------------------------------------------hhhhhHHHHHHHHHHHHHhcce
Confidence 1 2344557889999999999999
Q ss_pred cccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcC
Q 003038 621 PWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTR 700 (854)
Q Consensus 621 ~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~ 700 (854)
+||++|+..|+.+|.+.+.|+.+++ ||.++|||+||+|||||++|++||+.++ .+|+++||++|.
T Consensus 457 ~GQ~~ai~~l~~~i~~~~~g~~~~~---------~p~~~~lf~Gp~GvGKT~lA~~la~~l~---~~~~~~d~se~~--- 521 (731)
T TIGR02639 457 FGQDEAIDSLVSSIKRSRAGLGNPN---------KPVGSFLFTGPTGVGKTELAKQLAEALG---VHLERFDMSEYM--- 521 (731)
T ss_pred eCcHHHHHHHHHHHHHHhcCCCCCC---------CCceeEEEECCCCccHHHHHHHHHHHhc---CCeEEEeCchhh---
Confidence 9999999999999999999998864 8899999999999999999999999984 579999999999
Q ss_pred CCccccccccccC-CCCCC-chHH--HHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeecCCeEE
Q 003038 701 ADSTEDSRNKRSR-DEQSC-SYIE--RFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDAIV 776 (854)
Q Consensus 701 ~~s~e~~~~~rl~-~~~g~-g~~e--~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIi 776 (854)
+.|.+++++ .++|| ||.+ .|+++++++|++|||||||||+|+++++.|+++||+|+++|+.|+.|+|+|+||
T Consensus 522 ----~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~ii 597 (731)
T TIGR02639 522 ----EKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVIL 597 (731)
T ss_pred ----hcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEE
Confidence 788888888 47788 8876 799999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCC
Q 003038 777 ILSCESF 783 (854)
Q Consensus 777 IlTsn~f 783 (854)
|||||..
T Consensus 598 i~Tsn~g 604 (731)
T TIGR02639 598 IMTSNAG 604 (731)
T ss_pred EECCCcc
Confidence 9999863
No 8
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-80 Score=738.11 Aligned_cols=568 Identities=16% Similarity=0.240 Sum_probs=446.5
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCcHHHHHHHHcCCChhhHHHHHHHHHHHhcc-CCCCCCCCCCC
Q 003038 12 LTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALELCFNVALNR-LPASTSTPMLG 90 (854)
Q Consensus 12 fT~~a~~aL~~A~~~A~~~gh~~Vt~eHLLlaLL~~~~s~l~~iL~~~gvd~~~~~aL~~~l~~~L~r-lp~~~~~~~~~ 90 (854)
||+.+..+|..|+.+|++++|.+|+++|||++|+.++. +..+|..+|++. ..+++.+...+.. .|.....+..+
T Consensus 2 ~~~~~~~~l~~a~~~a~~~~~~~~~~~h~l~~l~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (758)
T PRK11034 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPS--AREALEACSVDL---VALRQELEAFIEQTTPVLPASEEER 76 (758)
T ss_pred cCHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHcChh--HHHHHHHcCCCH---HHHHHHHHHHHhhcCCcCCCCCCcC
Confidence 78999999999999999999999999999999998765 889999999985 7889999888763 33211100001
Q ss_pred CCccChhHHHHHHHHHHHHHHHhhhCCcccccccccccccCHHHHHHHhccCC--hHHHHHHHhCCCHHHHHHHHHHHhh
Q 003038 91 GHCQFPTISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIELEQLIISILDDP--SVSRVMREAGFSSTQVKSNVEQAVS 168 (854)
Q Consensus 91 ~~~~~p~~s~~L~~al~~A~~~~~~~~~~~~~~~~~~~~I~~eHLLLALL~d~--~~~~iL~~~Gi~~~~l~~~v~~~l~ 168 (854)
+.++++.+.+.|..|...|... +.. +|+++|||+||++++ .+..+|..+|++...+...+... .
T Consensus 77 ~~~~~~~~~~~l~~a~~~~~~~----~~~---------~i~~~~ll~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~ 142 (758)
T PRK11034 77 DTQPTLSFQRVLQRAVFHVQSS----GRS---------EVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHG-T 142 (758)
T ss_pred CcCCCHHHHHHHHHHHHHHHHc----CCC---------cccHHHHHHHHhcCCcchHHHHHHHcCCCHHHHHHHHHhC-C
Confidence 1223444444444444444432 112 599999999999974 45679999999988775553310 0
Q ss_pred hhhc-c-CCCCCCC--CCcccccccccccccccccccCCCCCCCCC--cHHHHHHHHHHhhccCcCCceeecCCCCCHHH
Q 003038 169 LEIC-S-QSTPVSS--NKSKESNVLVLSQTASATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEG 242 (854)
Q Consensus 169 ~~~~-~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~ldpv--r~~ei~~v~~~L~r~~k~n~vLvGe~GvGKta 242 (854)
.... . .+..+.. ..........+.+|+.|+++.|++|++||+ |+++|++++++|+|++++||+|+||||||||+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~a~~g~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~ 222 (758)
T PRK11034 143 RKDEPSQSSDPGSQPNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTA 222 (758)
T ss_pred ccccccccccccccccccccccchhHHHHHHHhHHHHHHcCCCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHH
Confidence 0000 0 0000000 000001124788999999999999999998 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCcccCCceEEEccccccccc--chHHHHHHHHHHHHHHHhhhCCCeEEEeCccccc-ccccccccc
Q 003038 243 VVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHM--NRVEVEQRVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQ 319 (854)
Q Consensus 243 ~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~--~rge~E~rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~ 319 (854)
+|+++|++|..+++|..+.++.+++++++++++| |+|+||+|++.++++++.. +++||||||||.| +++.+.
T Consensus 223 lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~--~~~ILfIDEIh~L~g~g~~~--- 297 (758)
T PRK11034 223 IAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQD--TNSILFIDEIHTIIGAGAAS--- 297 (758)
T ss_pred HHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhc--CCCEEEeccHHHHhccCCCC---
Confidence 9999999999999999999999999999999976 8999999999999999875 5789999999999 877532
Q ss_pred ccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchhhhhccCCCCCCCchHHHHhh----------
Q 003038 320 VRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLETLWSLHPLTIPAGSLSLSLI---------- 389 (854)
Q Consensus 320 ~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~~~v~i~~~sl~~al~---------- 389 (854)
.+.++++++|+|...+|++.||||||+++|+++++.||+|+| ||+.|.|++|+...++.
T Consensus 298 ---------~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~~~~~~D~AL~r--RFq~I~v~ePs~~~~~~IL~~~~~~ye 366 (758)
T PRK11034 298 ---------GGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALAR--RFQKIDITEPSIEETVQIINGLKPKYE 366 (758)
T ss_pred ---------CcHHHHHHHHHHHHhCCCeEEEecCChHHHHHHhhccHHHHh--hCcEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 145789999988333447999999999999999999999999 99999999998765432
Q ss_pred ------cccch------hhhccccCCcCCCcccccccchhhhhhhcccccchhhhHHHHhhhhcccCCCCCCCCCChHHH
Q 003038 390 ------TTDSD------LQSQSTSKKAESGVSWLLFEGEEENKQLTCCADCSAKFEAEARSLQSSSCNSDSPTSSLPAWL 457 (854)
Q Consensus 390 ------~~~s~------~~~~~~~~~~~pdkaidlld~a~~~~~~~c~~~~~~~~e~e~~~~~~~~~~~~~~~~~lp~~l 457 (854)
+.+.+ ++.+|++++++|||||||||+|++.+.+ .|..
T Consensus 367 ~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~~~------------------------------~~~~- 415 (758)
T PRK11034 367 AHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARL------------------------------MPVS- 415 (758)
T ss_pred hccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHhhcc------------------------------Cccc-
Confidence 23333 2458999999999999999998765221 0100
Q ss_pred HhhHHHHhhcccCCCcccchhhHHHHHHHHhhhcccCccccccccccccCCCCCCCCcccccccCcchhhhhhhhhcccc
Q 003038 458 QQYKNEKKATLSNNDKDSGVRDLCKKWNSICNSIHKQPYYSERTLTFSSASPSSSTSGFSYDQQYPNFHKTHRDWAVVEP 537 (854)
Q Consensus 458 ~~~~~~~~~~~~~~d~~~~~~~L~~~w~~~~~~~~~~~~~~~~~~~~~s~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~ 537 (854)
... .. +. ..++.+....|.
T Consensus 416 -----~~~----------------------------------~~-----------v~-------~~~i~~v~~~~t---- 434 (758)
T PRK11034 416 -----KRK----------------------------------KT-----------VN-------VADIESVVARIA---- 434 (758)
T ss_pred -----ccc----------------------------------cc-----------cC-------hhhHHHHHHHHh----
Confidence 000 00 00 011121111121
Q ss_pred ccchhccccccccccccCCCCCcccccccccccccccccccCCCCCCCCCCccccccchhhhhhhhhhHHHHHHHHHhhc
Q 003038 538 KQSWREHHFLFSHEASDKSTSEPSLRLYIPEHKDLKQPLSSNRNSTPNSTSSSDIMEMEYVHKFKELNSENLTSLCNALE 617 (854)
Q Consensus 538 ~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~e~l~~L~~~L~ 617 (854)
.+| + .++.+.+.++++.|++.|.
T Consensus 435 gip------------------------------------------------------~---~~~~~~~~~~l~~l~~~L~ 457 (758)
T PRK11034 435 RIP------------------------------------------------------E---KSVSQSDRDTLKNLGDRLK 457 (758)
T ss_pred CCC------------------------------------------------------h---hhhhhhHHHHHHHHHHHhc
Confidence 111 1 3344567889999999999
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
++|+||++|+..|+.+|.+.++|+.+++ ||.++|||+||+|||||++|++||+.+ +.+|+++||++|.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~---------kp~~~~Lf~GP~GvGKT~lAk~LA~~l---~~~~i~id~se~~ 525 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEH---------KPVGSFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEYM 525 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCC---------CCcceEEEECCCCCCHHHHHHHHHHHh---CCCcEEeechhhc
Confidence 9999999999999999999999998864 889999999999999999999999998 3689999999998
Q ss_pred CcCCCccccccccccCC-CCCC-chHH--HHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeecCC
Q 003038 698 STRADSTEDSRNKRSRD-EQSC-SYIE--RFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGD 773 (854)
Q Consensus 698 ~~~~~s~e~~~~~rl~~-~~g~-g~~e--~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~~~ 773 (854)
+.+.++++++ ++|| ||.+ .|+++++++|++|||||||||+|+++|+.|+++||+|+++|..|++++|+|
T Consensus 526 -------~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn 598 (758)
T PRK11034 526 -------ERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRN 598 (758)
T ss_pred -------ccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCC
Confidence 7777888884 6788 8875 799999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCC
Q 003038 774 AIVILSCES 782 (854)
Q Consensus 774 aIiIlTsn~ 782 (854)
+|||||||.
T Consensus 599 ~iiI~TsN~ 607 (758)
T PRK11034 599 VVLVMTTNA 607 (758)
T ss_pred cEEEEeCCc
Confidence 999999983
No 9
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.89 E-value=1.6e-23 Score=210.70 Aligned_cols=116 Identities=22% Similarity=0.342 Sum_probs=97.2
Q ss_pred CcceeEEEecCCCchHHHHHHHHHHHHh-CCCCceEEEccccccCcCCCccccccccccC-CCCCC-chHHHHHHHHHcC
Q 003038 655 KEETWLFFQGVDADAKEKIAKELARLVF-GSHNNFVSIALSSFSSTRADSTEDSRNKRSR-DEQSC-SYIERFAEAVSNN 731 (854)
Q Consensus 655 kp~~~lLf~Gp~GvGKt~lAr~LA~~lf-g~~~~~i~id~s~~~~~~~~s~e~~~~~rl~-~~~g~-g~~e~L~eav~~~ 731 (854)
||.++|||+||+|||||+||++||+.+| ++..+|+++||++|+...+ ..+.+.+++ .+++| ++.
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~---~~~~~~~l~~~~~~~v~~~---------- 67 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDD---VESSVSKLLGSPPGYVGAE---------- 67 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHH---CSCHCHHHHHHTTCHHHHH----------
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccch---HHhhhhhhhhcccceeecc----------
Confidence 4788999999999999999999999999 8999999999999992000 055566655 34444 332
Q ss_pred CCEEEEEecCCCCCH-----------HHHHHHHHhhhcCeEecCCCceeecCCeEEEEecCCC
Q 003038 732 PHRVFLIEDVEQADY-----------CSQKGFKRAIESGRIVTSSGDEVSLGDAIVILSCESF 783 (854)
Q Consensus 732 p~~ViliDEieka~~-----------~v~~~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn~f 783 (854)
++.|||||||||+|+ .||+.||++||+|+++|.+|++|+|+|+|||||||..
T Consensus 68 ~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 68 EGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp HHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred chhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 233999999999999 9999999999999999999999999999999999853
No 10
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=9.9e-22 Score=220.53 Aligned_cols=134 Identities=13% Similarity=0.123 Sum_probs=105.2
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeC
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLG 305 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfid 305 (854)
-.+.++|+||||||||.+++++|.. .++.|++++...+++|+.||.|+++++||+.+++. .|||+|||
T Consensus 222 PprGvLlHGPPGCGKT~lA~AiAge----------l~vPf~~isApeivSGvSGESEkkiRelF~~A~~~--aPcivFiD 289 (802)
T KOG0733|consen 222 PPRGVLLHGPPGCGKTSLANAIAGE----------LGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSN--APCIVFID 289 (802)
T ss_pred CCCceeeeCCCCccHHHHHHHHhhh----------cCCceEeecchhhhcccCcccHHHHHHHHHHHhcc--CCeEEEee
Confidence 4567899999999999999999976 47899999999999999999999999999999987 79999999
Q ss_pred ccccc-cccccccccccccchhhhHHHHHHHhhcc-c----CCCCceEEEEEecCHHHHHHhhccCCchhhhhcc---CC
Q 003038 306 DLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVC-G----IGENARFWLMGIATFQSYMRCKSGHPSLETLWSL---HP 376 (854)
Q Consensus 306 el~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~-~----~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~---~~ 376 (854)
||+.+ ..+..+. .....+.|..+-+.+- . ..| ..+.+||||+-.. ..||+|.|.-|| -.
T Consensus 290 eIDAI~pkRe~aq------reMErRiVaQLlt~mD~l~~~~~~g-~~VlVIgATnRPD-----slDpaLRRaGRFdrEI~ 357 (802)
T KOG0733|consen 290 EIDAITPKREEAQ------REMERRIVAQLLTSMDELSNEKTKG-DPVLVIGATNRPD-----SLDPALRRAGRFDREIC 357 (802)
T ss_pred cccccccchhhHH------HHHHHHHHHHHHHhhhcccccccCC-CCeEEEecCCCCc-----ccCHHHhccccccceee
Confidence 99999 6554321 2233466666555552 1 112 2699999999655 579999997777 34
Q ss_pred CCCCCch
Q 003038 377 LTIPAGS 383 (854)
Q Consensus 377 v~i~~~s 383 (854)
+.||+..
T Consensus 358 l~vP~e~ 364 (802)
T KOG0733|consen 358 LGVPSET 364 (802)
T ss_pred ecCCchH
Confidence 5666554
No 11
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.77 E-value=4.3e-17 Score=199.08 Aligned_cols=135 Identities=11% Similarity=0.140 Sum_probs=97.3
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeC
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLG 305 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfid 305 (854)
..++++|+||||+|||++++++|... +..++.++...+.+.+.|+.+++++.+++.+... .|.|||||
T Consensus 211 ~~~giLL~GppGtGKT~laraia~~~----------~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~--~p~il~iD 278 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAKAVANEA----------GAYFISINGPEIMSKYYGESEERLREIFKEAEEN--APSIIFID 278 (733)
T ss_pred CCceEEEECCCCCChHHHHHHHHHHh----------CCeEEEEecHHHhcccccHHHHHHHHHHHHHHhc--CCcEEEee
Confidence 34689999999999999999999864 4578999988888889999999999999999875 68999999
Q ss_pred ccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchhhhhcc-CCCCCCCch
Q 003038 306 DLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLETLWSL-HPLTIPAGS 383 (854)
Q Consensus 306 el~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~-~~v~i~~~s 383 (854)
||+.+ ..+...... .-......+.+++.....++.+.+||+|+..+. .||+|.|.-|| ..+.++.|+
T Consensus 279 Eid~l~~~r~~~~~~------~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~-----ld~al~r~gRfd~~i~i~~P~ 347 (733)
T TIGR01243 279 EIDAIAPKREEVTGE------VEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDA-----LDPALRRPGRFDREIVIRVPD 347 (733)
T ss_pred hhhhhcccccCCcch------HHHHHHHHHHHHhhccccCCCEEEEeecCChhh-----cCHHHhCchhccEEEEeCCcC
Confidence 99999 554321000 011234455555533123346999999987653 48888774455 234555444
No 12
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.75 E-value=5.4e-18 Score=191.16 Aligned_cols=151 Identities=13% Similarity=0.153 Sum_probs=116.9
Q ss_pred HHHHHHhhcCcccccHHHHHHHHHHHHHhhcCCCc--ccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCC
Q 003038 609 LTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTMR--RKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHN 686 (854)
Q Consensus 609 l~~L~~~L~~~V~GQ~~av~~Ia~~v~~~rsgl~~--~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~ 686 (854)
.+.|++.|.+.|+||++|+..++.+|.+.+.++.. ...... --..+.+++||.||+|+|||++|++||+.+ ..
T Consensus 68 p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~--~~~~~~~~iLL~GP~GsGKT~lAraLA~~l---~~ 142 (413)
T TIGR00382 68 PKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDN--GVELSKSNILLIGPTGSGKTLLAQTLARIL---NV 142 (413)
T ss_pred HHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhcccccccccc--ccccCCceEEEECCCCcCHHHHHHHHHHhc---CC
Confidence 46899999999999999999999999887777654 110000 000124689999999999999999999877 34
Q ss_pred ceEEEccccccCcCCCccccccccccCCCCCC-chH--HHHHHHHHcCCC-------EEEEEecCCCCCH----------
Q 003038 687 NFVSIALSSFSSTRADSTEDSRNKRSRDEQSC-SYI--ERFAEAVSNNPH-------RVFLIEDVEQADY---------- 746 (854)
Q Consensus 687 ~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~-g~~--e~L~eav~~~p~-------~ViliDEieka~~---------- 746 (854)
+|+.++++.+. +++| |+. ..|.++++..++ .|||||||||+++
T Consensus 143 pf~~~da~~L~-----------------~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~d 205 (413)
T TIGR00382 143 PFAIADATTLT-----------------EAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRD 205 (413)
T ss_pred CeEEechhhcc-----------------ccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhcccccccc
Confidence 67777766443 2344 553 256666665444 5999999999998
Q ss_pred ----HHHHHHHHhhhcCeEec---CCCceeecCCeEEEEecCC
Q 003038 747 ----CSQKGFKRAIESGRIVT---SSGDEVSLGDAIVILSCES 782 (854)
Q Consensus 747 ----~v~~~Ll~~le~G~l~d---~~G~~v~~~~aIiIlTsn~ 782 (854)
.+|+.||++| +|.++| ..|+.++|+|+|+|+|||.
T Consensus 206 vsg~~vq~~LL~iL-eG~~~~v~~~~gr~~~~~~~i~i~TsNi 247 (413)
T TIGR00382 206 VSGEGVQQALLKII-EGTVANVPPQGGRKHPYQEFIQIDTSNI 247 (413)
T ss_pred ccchhHHHHHHHHh-hccceecccCCCccccCCCeEEEEcCCc
Confidence 6999999999 599987 6789999999999999996
No 13
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=3.2e-17 Score=187.36 Aligned_cols=134 Identities=12% Similarity=0.094 Sum_probs=102.3
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeC
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLG 305 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfid 305 (854)
-.++++++||||+|||.+|+++|++ .+++++.++...++..+-||.|..|+..++++.+. ..|.|+|||
T Consensus 217 ~prg~Ll~gppg~Gkt~l~~aVa~e----------~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~-~~psii~Id 285 (693)
T KOG0730|consen 217 PPRGLLLYGPPGTGKTFLVRAVANE----------YGAFLFLINGPELISKFPGETESNLRKAFAEALKF-QVPSIIFID 285 (693)
T ss_pred CCCCccccCCCCCChHHHHHHHHHH----------hCceeEecccHHHHHhcccchHHHHHHHHHHHhcc-CCCeeEeHH
Confidence 5678999999999999999999987 57899999999999999999999999999999987 339999999
Q ss_pred ccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchhhhhcc-CCCCCCCch
Q 003038 306 DLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLETLWSL-HPLTIPAGS 383 (854)
Q Consensus 306 el~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~-~~v~i~~~s 383 (854)
||+.+ +.+.... ......+..+-.|+....+.+.+.+|++|.-.. ..||++.| -|| +-|.|.-|+
T Consensus 286 Eld~l~p~r~~~~-------~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~-----sld~alRR-gRfd~ev~IgiP~ 352 (693)
T KOG0730|consen 286 ELDALCPKREGAD-------DVESRVVSQLLTLLDGLKPDAKVIVLAATNRPD-----SLDPALRR-GRFDREVEIGIPG 352 (693)
T ss_pred hHhhhCCcccccc-------hHHHHHHHHHHHHHhhCcCcCcEEEEEecCCcc-----ccChhhhc-CCCcceeeecCCC
Confidence 99999 5443210 123356666667764322233699999997544 47899886 455 444444333
No 14
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.64 E-value=8.7e-16 Score=174.22 Aligned_cols=152 Identities=13% Similarity=0.139 Sum_probs=112.5
Q ss_pred HHHHHHhhcCcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCce
Q 003038 609 LTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNF 688 (854)
Q Consensus 609 l~~L~~~L~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~ 688 (854)
.+.+...|.+.|+||++|+..|+.+|.....++....... .....+..++||.||+|+|||++|++||+.+ ..+|
T Consensus 62 p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~--~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l---~~pf 136 (412)
T PRK05342 62 PKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKD--DDVELQKSNILLIGPTGSGKTLLAQTLARIL---DVPF 136 (412)
T ss_pred HHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccc--cccccCCceEEEEcCCCCCHHHHHHHHHHHh---CCCc
Confidence 4688899999999999999999999865433332211000 0001245689999999999999999999987 4689
Q ss_pred EEEccccccCcCCCccccccccccCCCCCC-chH-H-HHHHH-------HHcCCCEEEEEecCCCCCH------------
Q 003038 689 VSIALSSFSSTRADSTEDSRNKRSRDEQSC-SYI-E-RFAEA-------VSNNPHRVFLIEDVEQADY------------ 746 (854)
Q Consensus 689 i~id~s~~~~~~~~s~e~~~~~rl~~~~g~-g~~-e-~L~ea-------v~~~p~~ViliDEieka~~------------ 746 (854)
+++|++.++. .+| |.. + .+... +...+++||||||||++++
T Consensus 137 ~~id~~~l~~-----------------~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s 199 (412)
T PRK05342 137 AIADATTLTE-----------------AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVS 199 (412)
T ss_pred eecchhhccc-----------------CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcc
Confidence 9999987761 123 332 1 23332 3445789999999999986
Q ss_pred --HHHHHHHHhhhcCe--EecCCCceeecCCeEEEEecCC
Q 003038 747 --CSQKGFKRAIESGR--IVTSSGDEVSLGDAIVILSCES 782 (854)
Q Consensus 747 --~v~~~Ll~~le~G~--l~d~~G~~v~~~~aIiIlTsn~ 782 (854)
.+|+.||++||.+. +++..|+..++.+.|+|+|+|.
T Consensus 200 ~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~ni 239 (412)
T PRK05342 200 GEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNI 239 (412)
T ss_pred cHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCc
Confidence 39999999998543 3567889999999999999996
No 15
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=99.56 E-value=1.3e-14 Score=152.91 Aligned_cols=148 Identities=18% Similarity=0.141 Sum_probs=111.6
Q ss_pred HHHHHHHhhcCcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCc
Q 003038 608 NLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNN 687 (854)
Q Consensus 608 ~l~~L~~~L~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~ 687 (854)
++..|++.|..+++||.-++..|..+|..... +++ |.|| .++-|+|++|+||..+++.||+.+|....
T Consensus 72 ~~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~---n~~-------p~KP-LvLSfHG~tGTGKN~Va~iiA~n~~~~Gl- 139 (344)
T KOG2170|consen 72 DLDGLEKDLARALFGQHLAKQLVVNALKSHWA---NPN-------PRKP-LVLSFHGWTGTGKNYVAEIIAENLYRGGL- 139 (344)
T ss_pred cchHHHHHHHHHhhchHHHHHHHHHHHHHHhc---CCC-------CCCC-eEEEecCCCCCchhHHHHHHHHHHHhccc-
Confidence 36789999999999999999999999988765 222 2366 48999999999999999999999985431
Q ss_pred eEEEccccccCcCCCccccccccccCCC-CCC--chHHH----HHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCe
Q 003038 688 FVSIALSSFSSTRADSTEDSRNKRSRDE-QSC--SYIER----FAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGR 760 (854)
Q Consensus 688 ~i~id~s~~~~~~~~s~e~~~~~rl~~~-~g~--g~~e~----L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~ 760 (854)
+|.|. .+.+.++-.| +.+ .|.++ +.+-++.++.++++|||+||+|+.+.+.|...+|...
T Consensus 140 -----~S~~V--------~~fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdyyp 206 (344)
T KOG2170|consen 140 -----RSPFV--------HHFVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDYYP 206 (344)
T ss_pred -----cchhH--------HHhhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhcccc
Confidence 12221 1112222111 222 45554 5555667899999999999999999999999999755
Q ss_pred EecCCCceeecCCeEEEEecCCCC
Q 003038 761 IVTSSGDEVSLGDAIVILSCESFS 784 (854)
Q Consensus 761 l~d~~G~~v~~~~aIiIlTsn~f~ 784 (854)
..++ ++|++|||||-||.-.
T Consensus 207 ~v~g----v~frkaIFIfLSN~gg 226 (344)
T KOG2170|consen 207 QVSG----VDFRKAIFIFLSNAGG 226 (344)
T ss_pred cccc----ccccceEEEEEcCCcc
Confidence 5443 9999999999998543
No 16
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.6e-12 Score=150.46 Aligned_cols=155 Identities=17% Similarity=0.167 Sum_probs=105.7
Q ss_pred CCCCCC-cHHHHHHHHHHhhccCcC---------CceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccccccc
Q 003038 205 VSLDPI-RNEDVMYVIENLMSKRKR---------NFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFR 274 (854)
Q Consensus 205 g~ldpv-r~~ei~~v~~~L~r~~k~---------n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~ 274 (854)
+.+.+. ++.-+..+.++|.-+... .++|+|+||+|||++|+.+|..+ |.+|+.+|..+|.
T Consensus 399 n~~~~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~l----------g~h~~evdc~el~ 468 (953)
T KOG0736|consen 399 NSLSPPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASEL----------GLHLLEVDCYELV 468 (953)
T ss_pred ccCCCccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHh----------CCceEeccHHHHh
Confidence 444444 777788888998754222 26899999999999999999884 8899999999999
Q ss_pred ccchHHHHHHHHHHHHHHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcc---cCCCCceEEEE
Q 003038 275 HMNRVEVEQRVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVC---GIGENARFWLM 350 (854)
Q Consensus 275 ~~~rge~E~rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~---~~~g~g~l~lI 350 (854)
+...+-.|.++...+..++.+ .|+|||+-.+..+ ....++ +.. ....-+..++. .....+.+.+|
T Consensus 469 ~~s~~~~etkl~~~f~~a~~~--~pavifl~~~dvl~id~dgg-----ed~----rl~~~i~~~ls~e~~~~~~~~~ivv 537 (953)
T KOG0736|consen 469 AESASHTETKLQAIFSRARRC--SPAVLFLRNLDVLGIDQDGG-----EDA----RLLKVIRHLLSNEDFKFSCPPVIVV 537 (953)
T ss_pred hcccchhHHHHHHHHHHHhhc--CceEEEEeccceeeecCCCc-----hhH----HHHHHHHHHHhcccccCCCCceEEE
Confidence 999999999999999999986 7999999999988 222211 000 01111111222 11112369999
Q ss_pred EecCHHHHHHhhccCCchhhhhccCCCCCCCchHHH
Q 003038 351 GIATFQSYMRCKSGHPSLETLWSLHPLTIPAGSLSL 386 (854)
Q Consensus 351 gatT~~ey~k~~~~~pale~~~~~~~v~i~~~sl~~ 386 (854)
|+|+..+ .=|+--+---+|.+.|+.++-+.
T Consensus 538 ~t~~s~~------~lp~~i~~~f~~ei~~~~lse~q 567 (953)
T KOG0736|consen 538 ATTSSIE------DLPADIQSLFLHEIEVPALSEEQ 567 (953)
T ss_pred Eeccccc------cCCHHHHHhhhhhccCCCCCHHH
Confidence 9998644 22333332245777777766444
No 17
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.41 E-value=8.9e-13 Score=161.89 Aligned_cols=160 Identities=15% Similarity=0.199 Sum_probs=111.6
Q ss_pred HHHHHHHHHhhcCcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCC
Q 003038 606 SENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSH 685 (854)
Q Consensus 606 ~e~l~~L~~~L~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~ 685 (854)
..+++.+++.|.+.++||++++..|...+...+.. ... +. ..++|+||+|||||++|++||+.+ .
T Consensus 308 ~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~-~~~----------~~-~~lll~GppG~GKT~lAk~iA~~l---~ 372 (775)
T TIGR00763 308 NLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLR-GKM----------KG-PILCLVGPPGVGKTSLGKSIAKAL---N 372 (775)
T ss_pred hhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhh-cCC----------CC-ceEEEECCCCCCHHHHHHHHHHHh---c
Confidence 56789999999999999999999999866543220 010 11 279999999999999999999998 3
Q ss_pred CceEEEccccccCcCCCccccccccccCCCCCCchH-HHHHHHHHcCCCEEEEEecCCCCCHHH----HHHHHHhhhc--
Q 003038 686 NNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYI-ERFAEAVSNNPHRVFLIEDVEQADYCS----QKGFKRAIES-- 758 (854)
Q Consensus 686 ~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~-e~L~eav~~~p~~ViliDEieka~~~v----~~~Ll~~le~-- 758 (854)
.+|++++++........ ..|. ...++ ...|+. +.+..+.+.+| |||||||||+++.. .+.|+++||.
T Consensus 373 ~~~~~i~~~~~~~~~~i--~g~~-~~~~g-~~~g~i~~~l~~~~~~~~--villDEidk~~~~~~~~~~~aLl~~ld~~~ 446 (775)
T TIGR00763 373 RKFVRFSLGGVRDEAEI--RGHR-RTYVG-AMPGRIIQGLKKAKTKNP--LFLLDEIDKIGSSFRGDPASALLEVLDPEQ 446 (775)
T ss_pred CCeEEEeCCCcccHHHH--cCCC-CceeC-CCCchHHHHHHHhCcCCC--EEEEechhhcCCccCCCHHHHHHHhcCHHh
Confidence 57899987755410000 0111 11111 111332 23334333444 99999999997754 4899999984
Q ss_pred -CeEecCC-CceeecCCeEEEEecCCCCCC
Q 003038 759 -GRIVTSS-GDEVSLGDAIVILSCESFSSR 786 (854)
Q Consensus 759 -G~l~d~~-G~~v~~~~aIiIlTsn~f~~~ 786 (854)
+.++|.. +..+++++++||+|+|..+..
T Consensus 447 ~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i 476 (775)
T TIGR00763 447 NNAFSDHYLDVPFDLSKVIFIATANSIDTI 476 (775)
T ss_pred cCccccccCCceeccCCEEEEEecCCchhC
Confidence 7888864 788999999999999976543
No 18
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=5.4e-13 Score=154.40 Aligned_cols=144 Identities=13% Similarity=0.147 Sum_probs=108.9
Q ss_pred HHHHHHHHHH-------hhcc--CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHH
Q 003038 212 NEDVMYVIEN-------LMSK--RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVE 282 (854)
Q Consensus 212 ~~ei~~v~~~-------L~r~--~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E 282 (854)
..||...|+. +..+ ++..++|+||||+|||-+|+++|-. ....|+++....|+.||.||.|
T Consensus 681 K~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATE----------csL~FlSVKGPELLNMYVGqSE 750 (953)
T KOG0736|consen 681 KTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATE----------CSLNFLSVKGPELLNMYVGQSE 750 (953)
T ss_pred HHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhh----------ceeeEEeecCHHHHHHHhcchH
Confidence 3455555544 4443 4567999999999999999999987 3678999999999999999999
Q ss_pred HHHHHHHHHHHhhhCCCeEEEeCccccc-c-ccccccccccccchhhhHHHHHHHhhc-ccC-CCCceEEEEEecCHHHH
Q 003038 283 QRVEEIKNLVRSCLGRGIVLNLGDLEWA-E-FRASSSEQVRGYYCSIEHIIMEIGKLV-CGI-GENARFWLMGIATFQSY 358 (854)
Q Consensus 283 ~rl~~l~~~~~~~~~~~~ILfidel~~l-~-~~~~~~~~~~~~~~~~~~~~~~~~~ll-~~~-~g~g~l~lIgatT~~ey 358 (854)
+.++++|+.+++. .|||+|+|||+.+ . .|.++..| .+||+.|..+-.=| +.. .....+.+||||+....
T Consensus 751 ~NVR~VFerAR~A--~PCVIFFDELDSlAP~RG~sGDSG-----GVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDL 823 (953)
T KOG0736|consen 751 ENVREVFERARSA--APCVIFFDELDSLAPNRGRSGDSG-----GVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDL 823 (953)
T ss_pred HHHHHHHHHhhcc--CCeEEEeccccccCccCCCCCCcc-----ccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccc
Confidence 9999999999987 7999999999999 4 44333222 35667665543333 221 12247999999997663
Q ss_pred HHhhccCCchhhhhccCCC
Q 003038 359 MRCKSGHPSLETLWSLHPL 377 (854)
Q Consensus 359 ~k~~~~~pale~~~~~~~v 377 (854)
-||||-|--||..+
T Consensus 824 -----LDpALLRPGRFDKL 837 (953)
T KOG0736|consen 824 -----LDPALLRPGRFDKL 837 (953)
T ss_pred -----cChhhcCCCcccee
Confidence 69999987777544
No 19
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.37 E-value=7.8e-12 Score=129.05 Aligned_cols=107 Identities=16% Similarity=0.212 Sum_probs=70.2
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
+.++||++++..+.-.+...+. + ..+..++||+||||+|||+||+.||+.+ ..+|..+......
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~----r---------~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~~~sg~~i~ 87 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKK----R---------GEALDHMLFYGPPGLGKTTLARIIANEL---GVNFKITSGPAIE 87 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHC----T---------TS---EEEEESSTTSSHHHHHHHHHHHC---T--EEEEECCC--
T ss_pred HHccCcHHHHhhhHHHHHHHHh----c---------CCCcceEEEECCCccchhHHHHHHHhcc---CCCeEeccchhhh
Confidence 5689999999987766665543 1 1456799999999999999999999988 2345443322111
Q ss_pred CcCCCccccccccccCCCCCCchHHHHHHHHHc-CCCEEEEEecCCCCCHHHHHHHHHhhhcCeEe
Q 003038 698 STRADSTEDSRNKRSRDEQSCSYIERFAEAVSN-NPHRVFLIEDVEQADYCSQKGFKRAIESGRIV 762 (854)
Q Consensus 698 ~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~-~p~~ViliDEieka~~~v~~~Ll~~le~G~l~ 762 (854)
.. ..|...+.. .+..|+||||||++++.+|+.|+.+||+|.+.
T Consensus 88 ---------------------k~-~dl~~il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~id 131 (233)
T PF05496_consen 88 ---------------------KA-GDLAAILTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKID 131 (233)
T ss_dssp ---------------------SC-HHHHHHHHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEE
T ss_pred ---------------------hH-HHHHHHHHhcCCCcEEEEechhhccHHHHHHHHHHhccCeEE
Confidence 00 112222222 45779999999999999999999999999985
No 20
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.37 E-value=1.2e-12 Score=138.73 Aligned_cols=136 Identities=18% Similarity=0.243 Sum_probs=92.9
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCC---CceEEEcccc
Q 003038 619 KVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSH---NNFVSIALSS 695 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~---~~~i~id~s~ 695 (854)
.+.||+++|..+.+++.+ |- ..++||+||+|+|||..|+++|+.+|+.. ..+...+.|.
T Consensus 37 e~~gQe~vV~~L~~a~~~-~~-----------------lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSd 98 (346)
T KOG0989|consen 37 ELAGQEHVVQVLKNALLR-RI-----------------LPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASD 98 (346)
T ss_pred hhcchHHHHHHHHHHHhh-cC-----------------CceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccc
Confidence 479999999999999987 32 34899999999999999999999999832 1112222221
Q ss_pred ccCcCCCccccccccccCCCCCCchHHHHHHHH------HcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCcee
Q 003038 696 FSSTRADSTEDSRNKRSRDEQSCSYIERFAEAV------SNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEV 769 (854)
Q Consensus 696 ~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav------~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v 769 (854)
.. ..+ .+....++|.. +.... -..|+.||+|||.|-|..+.|++|++.||+
T Consensus 99 er---Gis--------vvr~Kik~fak-l~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~----------- 155 (346)
T KOG0989|consen 99 ER---GIS--------VVREKIKNFAK-LTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMED----------- 155 (346)
T ss_pred cc---ccc--------chhhhhcCHHH-HhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhc-----------
Confidence 11 000 11111112222 11111 124679999999999999999999999995
Q ss_pred ecCCeEEEEecCCCCCCCCC-CCCCcc
Q 003038 770 SLGDAIVILSCESFSSRSRA-CSPPTK 795 (854)
Q Consensus 770 ~~~~aIiIlTsn~f~~~s~~-~sp~~~ 795 (854)
.-+++.|||-||..+-..+. .|.|+|
T Consensus 156 ~s~~trFiLIcnylsrii~pi~SRC~K 182 (346)
T KOG0989|consen 156 FSRTTRFILICNYLSRIIRPLVSRCQK 182 (346)
T ss_pred cccceEEEEEcCChhhCChHHHhhHHH
Confidence 23578899999887655555 466665
No 21
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.7e-12 Score=144.87 Aligned_cols=147 Identities=16% Similarity=0.180 Sum_probs=116.8
Q ss_pred HHHHHHHHHHhhc---------cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHH
Q 003038 212 NEDVMYVIENLMS---------KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVE 282 (854)
Q Consensus 212 ~~ei~~v~~~L~r---------~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E 282 (854)
..|+..|++-|.- +-.+.++||||||+|||-+++++|-. .++.|+...-+.|--+|.|.-.
T Consensus 313 K~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE----------A~VPFF~~sGSEFdEm~VGvGA 382 (752)
T KOG0734|consen 313 KQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE----------AGVPFFYASGSEFDEMFVGVGA 382 (752)
T ss_pred HHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc----------cCCCeEeccccchhhhhhcccH
Confidence 4678888887653 34578999999999999999999854 6788999999989889999999
Q ss_pred HHHHHHHHHHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcc-c--CCCCceEEEEEecCHHHH
Q 003038 283 QRVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVC-G--IGENARFWLMGIATFQSY 358 (854)
Q Consensus 283 ~rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~-~--~~g~g~l~lIgatT~~ey 358 (854)
.|+++||..+++. .|||+|||||+.+ +.+... ...|+-+.+.+||- . ...+-.|.+||||++.+
T Consensus 383 rRVRdLF~aAk~~--APcIIFIDEiDavG~kR~~~---------~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe- 450 (752)
T KOG0734|consen 383 RRVRDLFAAAKAR--APCIIFIDEIDAVGGKRNPS---------DQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPE- 450 (752)
T ss_pred HHHHHHHHHHHhc--CCeEEEEechhhhcccCCcc---------HHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChh-
Confidence 9999999999986 7999999999999 655432 22367778888882 2 11222599999999988
Q ss_pred HHhhccCCchhhhhcc-CCCCCCCchH
Q 003038 359 MRCKSGHPSLETLWSL-HPLTIPAGSL 384 (854)
Q Consensus 359 ~k~~~~~pale~~~~~-~~v~i~~~sl 384 (854)
.-||||-|--|| -.|+||-|.+
T Consensus 451 ----~LD~AL~RPGRFD~~v~Vp~PDv 473 (752)
T KOG0734|consen 451 ----ALDKALTRPGRFDRHVTVPLPDV 473 (752)
T ss_pred ----hhhHHhcCCCccceeEecCCCCc
Confidence 468999986666 4567776664
No 22
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.35 E-value=4e-13 Score=154.43 Aligned_cols=175 Identities=17% Similarity=0.158 Sum_probs=124.5
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..|+||++++..|.+++...|. .+.+||.||.|||||++||.+|+.|-.. ..-..-=|.++.
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri-----------------~hAYlfsG~RGvGKTt~Ari~AkalNC~-~~~~~ePC~~C~ 77 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRI-----------------AHAYLFSGPRGVGKTTIARILAKALNCE-NGPTAEPCGKCI 77 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcc-----------------hhhhhhcCCCCcCchhHHHHHHHHhcCC-CCCCCCcchhhh
Confidence 3469999999999999998654 4689999999999999999999999432 110000011111
Q ss_pred CcCCCccccccccccC--CCCCC-chHH--HHHHHHHcCC----CEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCce
Q 003038 698 STRADSTEDSRNKRSR--DEQSC-SYIE--RFAEAVSNNP----HRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDE 768 (854)
Q Consensus 698 ~~~~~s~e~~~~~rl~--~~~g~-g~~e--~L~eav~~~p----~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~ 768 (854)
.+... ...+...++ +.... |.++ .|.+.+...| |.|++|||+|.++...+|+||+.+|+
T Consensus 78 ~Ck~I--~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEE---------- 145 (515)
T COG2812 78 SCKEI--NEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEE---------- 145 (515)
T ss_pred hhHhh--hcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhccccc----------
Confidence 00000 111122222 22222 5555 7888888877 78999999999999999999999997
Q ss_pred eecCCeEEEE-ecCCCCCCCCCCCCCcc---CCCCC------------------ch-------hhcccccCCCCCceeee
Q 003038 769 VSLGDAIVIL-SCESFSSRSRACSPPTK---QKSDG------------------CE-------EEKGAAMEGTSPSVSLD 819 (854)
Q Consensus 769 v~~~~aIiIl-Tsn~f~~~s~~~sp~~~---~~~~~------------------~~-------~~~~~~~~~~~~~~~~~ 819 (854)
...+++||| |++....+.+..|.|++ +|+.. ++ ...+|+++|.-+-+|+=
T Consensus 146 -PP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~ 224 (515)
T COG2812 146 -PPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQA 224 (515)
T ss_pred -CccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHHH
Confidence 467888888 55667888888999987 66651 11 26677889988889998
Q ss_pred ccCC
Q 003038 820 LNIC 823 (854)
Q Consensus 820 l~~~ 823 (854)
++++
T Consensus 225 i~~~ 228 (515)
T COG2812 225 IAFG 228 (515)
T ss_pred HHcc
Confidence 8886
No 23
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=3.8e-11 Score=134.19 Aligned_cols=122 Identities=13% Similarity=0.144 Sum_probs=84.2
Q ss_pred HHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhh-
Q 003038 218 VIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCL- 296 (854)
Q Consensus 218 v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~- 296 (854)
|++-|.-+.-+.++|+||||+|||-+|+.+...+ ++.-|.-..|.+ +.+.|.||.|+.++.||..+++..
T Consensus 247 vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkML-NArePKIVNGPe--------IL~KYVGeSE~NvR~LFaDAEeE~r 317 (744)
T KOG0741|consen 247 VIEQLGIKHVKGILLYGPPGTGKTLIARQIGKML-NAREPKIVNGPE--------ILNKYVGESEENVRKLFADAEEEQR 317 (744)
T ss_pred HHHHcCccceeeEEEECCCCCChhHHHHHHHHHh-cCCCCcccCcHH--------HHHHhhcccHHHHHHHHHhHHHHHH
Confidence 4555666677889999999999999999998654 444465544444 556799999999999999998642
Q ss_pred -----CCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhc-cc----CCCCceEEEEEecCHHH
Q 003038 297 -----GRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLV-CG----IGENARFWLMGIATFQS 357 (854)
Q Consensus 297 -----~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll-~~----~~g~g~l~lIgatT~~e 357 (854)
.+=.|+.+|||+.+ ..+++.. |.++ +-+..| .+|| |. ... .+-+||-|+...
T Consensus 318 ~~g~~SgLHIIIFDEiDAICKqRGS~~-g~TG---VhD~VV---NQLLsKmDGVeqLN--NILVIGMTNR~D 380 (744)
T KOG0741|consen 318 RLGANSGLHIIIFDEIDAICKQRGSMA-GSTG---VHDTVV---NQLLSKMDGVEQLN--NILVIGMTNRKD 380 (744)
T ss_pred hhCccCCceEEEehhhHHHHHhcCCCC-CCCC---ccHHHH---HHHHHhcccHHhhh--cEEEEeccCchh
Confidence 22378889999999 5443221 1122 222333 3455 43 233 599999998655
No 24
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=1.1e-11 Score=146.44 Aligned_cols=137 Identities=12% Similarity=0.109 Sum_probs=86.8
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..|+||+++++.|.+.+... +....+||+||+|+|||++|++||+.|+... ......|..+.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~g-----------------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~-~~~~~PCG~C~ 77 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGG-----------------RLHHAYLFTGTRGVGKTTLSRIFAKALNCET-GVTSQPCGVCR 77 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcC-----------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcc-CCCCCCCcccH
Confidence 45799999999998887642 2245789999999999999999999997431 11111111111
Q ss_pred CcCCCcccccc-ccccCCCC-CCchHH--HHHHHHHc----CCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCcee
Q 003038 698 STRADSTEDSR-NKRSRDEQ-SCSYIE--RFAEAVSN----NPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEV 769 (854)
Q Consensus 698 ~~~~~s~e~~~-~~rl~~~~-g~g~~e--~L~eav~~----~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v 769 (854)
.+.......|. +.. ++.. ..|.++ .+.+.+.. ..++||||||+|+++...+|.||+.||+
T Consensus 78 sCr~I~~G~h~DviE-IDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEE----------- 145 (830)
T PRK07003 78 ACREIDEGRFVDYVE-MDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEE----------- 145 (830)
T ss_pred HHHHHhcCCCceEEE-ecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHh-----------
Confidence 00000000110 000 1111 114433 44454443 3579999999999999999999999996
Q ss_pred ecCCeEEEEecCCCC
Q 003038 770 SLGDAIVILSCESFS 784 (854)
Q Consensus 770 ~~~~aIiIlTsn~f~ 784 (854)
.-.+++|||+||...
T Consensus 146 PP~~v~FILaTtd~~ 160 (830)
T PRK07003 146 PPPHVKFILATTDPQ 160 (830)
T ss_pred cCCCeEEEEEECChh
Confidence 235778999987643
No 25
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=4.9e-12 Score=147.74 Aligned_cols=148 Identities=11% Similarity=0.096 Sum_probs=92.4
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCC----ceEEEcc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHN----NFVSIAL 693 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~----~~i~id~ 693 (854)
..|+||++++..|.+++...| -.+.+||+||.|+|||++|+.||+.|+.... .+..-.|
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----------------LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PC 78 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----------------LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPC 78 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----------------CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCC
Confidence 458999999999999988643 2457899999999999999999999975311 0000001
Q ss_pred ccccCcCCCcccccc-ccccCCCC-CCchHH--HHHHHHHcC----CCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCC
Q 003038 694 SSFSSTRADSTEDSR-NKRSRDEQ-SCSYIE--RFAEAVSNN----PHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSS 765 (854)
Q Consensus 694 s~~~~~~~~s~e~~~-~~rl~~~~-g~g~~e--~L~eav~~~----p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~ 765 (854)
..+..+.......|. +.. +.+. ..|.++ .|.+.+... .|+||||||+|+++...+|.||+.||+
T Consensus 79 G~C~sC~~I~aG~hpDviE-IdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEE------- 150 (700)
T PRK12323 79 GQCRACTEIDAGRFVDYIE-MDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEE------- 150 (700)
T ss_pred cccHHHHHHHcCCCCcceE-ecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhcc-------
Confidence 111100000000110 000 1111 114443 455555544 479999999999999999999999997
Q ss_pred CceeecCCeEEEEecCCCCCC-CCCCCCCc
Q 003038 766 GDEVSLGDAIVILSCESFSSR-SRACSPPT 794 (854)
Q Consensus 766 G~~v~~~~aIiIlTsn~f~~~-s~~~sp~~ 794 (854)
.-.+++|||+||..... .+..|.|+
T Consensus 151 ----PP~~v~FILaTtep~kLlpTIrSRCq 176 (700)
T PRK12323 151 ----PPEHVKFILATTDPQKIPVTVLSRCL 176 (700)
T ss_pred ----CCCCceEEEEeCChHhhhhHHHHHHH
Confidence 22567799988754333 23344443
No 26
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=7.1e-12 Score=135.26 Aligned_cols=139 Identities=12% Similarity=0.058 Sum_probs=108.7
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeC
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLG 305 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfid 305 (854)
-.+.++|+||||+|||-+|+++|.. -++.|+.+-.+.|+..|.||--.-++++|..++.. .|+|+|||
T Consensus 184 PPKGVLLYGPPGTGKTLLAkAVA~~----------T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArek--aPsIIFiD 251 (406)
T COG1222 184 PPKGVLLYGPPGTGKTLLAKAVANQ----------TDATFIRVVGSELVQKYIGEGARLVRELFELAREK--APSIIFID 251 (406)
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhc----------cCceEEEeccHHHHHHHhccchHHHHHHHHHHhhc--CCeEEEEe
Confidence 5678999999999999999999987 57899999999999999999999999999999986 79999999
Q ss_pred ccccc-cccccccccccccchhhhHHHHHHHhhccc--CCCCceEEEEEecCHHHHHHhhccCCchhhhhcc-CCCCCCC
Q 003038 306 DLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG--IGENARFWLMGIATFQSYMRCKSGHPSLETLWSL-HPLTIPA 381 (854)
Q Consensus 306 el~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~--~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~-~~v~i~~ 381 (854)
||+.+ ..+-.. .++...-|.+..|++-+=|-+ .+| .+.+|+||+--. .-||||-|--|| ..|.+|-
T Consensus 252 EIDAIg~kR~d~---~t~gDrEVQRTmleLL~qlDGFD~~~--nvKVI~ATNR~D-----~LDPALLRPGR~DRkIEfpl 321 (406)
T COG1222 252 EIDAIGAKRFDS---GTSGDREVQRTMLELLNQLDGFDPRG--NVKVIMATNRPD-----ILDPALLRPGRFDRKIEFPL 321 (406)
T ss_pred chhhhhcccccC---CCCchHHHHHHHHHHHHhccCCCCCC--CeEEEEecCCcc-----ccChhhcCCCcccceeecCC
Confidence 99999 443211 111223355677776666633 344 699999998655 479999986666 4566666
Q ss_pred chHHH
Q 003038 382 GSLSL 386 (854)
Q Consensus 382 ~sl~~ 386 (854)
|+...
T Consensus 322 Pd~~g 326 (406)
T COG1222 322 PDEEG 326 (406)
T ss_pred CCHHH
Confidence 65443
No 27
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=5.6e-12 Score=144.91 Aligned_cols=139 Identities=12% Similarity=0.118 Sum_probs=109.8
Q ss_pred cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEe
Q 003038 225 KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNL 304 (854)
Q Consensus 225 ~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfi 304 (854)
...+.++|+||||||||.+|+++|.. .++.|+++....|.++|.||.|.-++++|+.+++. .|+|+|+
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne----------~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~--aP~IiFf 533 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANE----------AGMNFLSVKGPELFSKYVGESERAIREVFRKARQV--APCIIFF 533 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhh----------hcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhc--CCeEEeh
Confidence 35678999999999999999999976 57899999999999999999999999999999997 6899999
Q ss_pred Cccccc-cccccccccccccchhhhHHHHHHHhhccc--CCCCceEEEEEecCHHHHHHhhccCCchhhhhcc-CCCCCC
Q 003038 305 GDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG--IGENARFWLMGIATFQSYMRCKSGHPSLETLWSL-HPLTIP 380 (854)
Q Consensus 305 del~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~--~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~-~~v~i~ 380 (854)
|||+.+ +.+++.++ .+.++....+-+-+-+ .. ..|.+||||+... ..||||-|--|| +.+.||
T Consensus 534 DEiDsi~~~R~g~~~------~v~~RVlsqLLtEmDG~e~~--k~V~ViAATNRpd-----~ID~ALlRPGRlD~iiyVp 600 (693)
T KOG0730|consen 534 DEIDALAGSRGGSSS------GVTDRVLSQLLTEMDGLEAL--KNVLVIAATNRPD-----MIDPALLRPGRLDRIIYVP 600 (693)
T ss_pred hhHHhHhhccCCCcc------chHHHHHHHHHHHccccccc--CcEEEEeccCChh-----hcCHHHcCCcccceeEeec
Confidence 999999 76653322 3445665554444422 22 2699999999765 579999885566 567777
Q ss_pred CchHHHHh
Q 003038 381 AGSLSLSL 388 (854)
Q Consensus 381 ~~sl~~al 388 (854)
-|.+..-+
T Consensus 601 lPD~~aR~ 608 (693)
T KOG0730|consen 601 LPDLEARL 608 (693)
T ss_pred CccHHHHH
Confidence 77766543
No 28
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.27 E-value=1.2e-11 Score=139.95 Aligned_cols=145 Identities=13% Similarity=0.151 Sum_probs=93.0
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..|+||++++..+.+++...+.+..... .+..+.+||+||+|+|||.+|+++|+.++..... .-.|..+.
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~--------~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~--~~~Cg~C~ 74 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAG--------SGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD--EPGCGECR 74 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccC--------CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC--CCCCCCCH
Confidence 4689999999999999988765433322 1234689999999999999999999999764321 01111111
Q ss_pred CcCCCccccccccccCCCCC--CchHH--HHHHHHHcCC----CEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCcee
Q 003038 698 STRADSTEDSRNKRSRDEQS--CSYIE--RFAEAVSNNP----HRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEV 769 (854)
Q Consensus 698 ~~~~~s~e~~~~~rl~~~~g--~g~~e--~L~eav~~~p----~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v 769 (854)
.+.......|.--..+.+.+ .+..+ .+.+.+...| ++|+||||+|++++..+|.|++.||+.
T Consensus 75 ~C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep---------- 144 (394)
T PRK07940 75 ACRTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEP---------- 144 (394)
T ss_pred HHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcC----------
Confidence 10000001121111122222 24444 4666665544 689999999999999999999999973
Q ss_pred ecCCeEEEEecCCC
Q 003038 770 SLGDAIVILSCESF 783 (854)
Q Consensus 770 ~~~~aIiIlTsn~f 783 (854)
-.+++|||+|+..
T Consensus 145 -~~~~~fIL~a~~~ 157 (394)
T PRK07940 145 -PPRTVWLLCAPSP 157 (394)
T ss_pred -CCCCeEEEEECCh
Confidence 1356677766543
No 29
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.26 E-value=1.2e-11 Score=135.65 Aligned_cols=130 Identities=18% Similarity=0.203 Sum_probs=92.8
Q ss_pred HHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHH
Q 003038 213 EDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLV 292 (854)
Q Consensus 213 ~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~ 292 (854)
.=|+|+++- ..-.+.||+||||||||++++.+|... ++.|..++.. .++. +.++++++.+
T Consensus 37 ~~lrr~v~~---~~l~SmIl~GPPG~GKTTlA~liA~~~----------~~~f~~~sAv--~~gv-----kdlr~i~e~a 96 (436)
T COG2256 37 KPLRRAVEA---GHLHSMILWGPPGTGKTTLARLIAGTT----------NAAFEALSAV--TSGV-----KDLREIIEEA 96 (436)
T ss_pred chHHHHHhc---CCCceeEEECCCCCCHHHHHHHHHHhh----------CCceEEeccc--cccH-----HHHHHHHHHH
Confidence 446777754 677899999999999999999999864 5577777543 3322 2477777777
Q ss_pred Hhhh--CCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchh
Q 003038 293 RSCL--GRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLE 369 (854)
Q Consensus 293 ~~~~--~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale 369 (854)
++.. |...||||||||.+ ...+. .||+. -.+|.|.+|||||.+.| |+.+|||-
T Consensus 97 ~~~~~~gr~tiLflDEIHRfnK~QQD--------------------~lLp~-vE~G~iilIGATTENPs---F~ln~ALl 152 (436)
T COG2256 97 RKNRLLGRRTILFLDEIHRFNKAQQD--------------------ALLPH-VENGTIILIGATTENPS---FELNPALL 152 (436)
T ss_pred HHHHhcCCceEEEEehhhhcChhhhh--------------------hhhhh-hcCCeEEEEeccCCCCC---eeecHHHh
Confidence 6543 56899999999999 65432 25543 23447999999999996 57899997
Q ss_pred h---hhccCCCCCCCchHHHHh
Q 003038 370 T---LWSLHPLTIPAGSLSLSL 388 (854)
Q Consensus 370 ~---~~~~~~v~i~~~sl~~al 388 (854)
+ +|.|.+++-. .|...+
T Consensus 153 SR~~vf~lk~L~~~--di~~~l 172 (436)
T COG2256 153 SRARVFELKPLSSE--DIKKLL 172 (436)
T ss_pred hhhheeeeecCCHH--HHHHHH
Confidence 5 3555655543 455444
No 30
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.26 E-value=2.2e-11 Score=136.36 Aligned_cols=81 Identities=19% Similarity=0.240 Sum_probs=65.2
Q ss_pred HHHHHHhhcCcccccHHHHHHHHHHHHH--hhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCC
Q 003038 609 LTSLCNALEKKVPWQKDTVYDIANTVLK--CRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHN 686 (854)
Q Consensus 609 l~~L~~~L~~~V~GQ~~av~~Ia~~v~~--~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~ 686 (854)
.+.+.+.|.+.|+||++|+..|+.++.. .|.++..+.+. ..+...+||+||+|+|||++|+.||+.+ ..
T Consensus 6 p~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~------e~~~~~ILliGp~G~GKT~LAr~LAk~l---~~ 76 (443)
T PRK05201 6 PREIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRD------EVTPKNILMIGPTGVGKTEIARRLAKLA---NA 76 (443)
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCccccc------ccCCceEEEECCCCCCHHHHHHHHHHHh---CC
Confidence 3578899999999999999999999976 34444432210 1223689999999999999999999998 57
Q ss_pred ceEEEccccccC
Q 003038 687 NFVSIALSSFSS 698 (854)
Q Consensus 687 ~~i~id~s~~~~ 698 (854)
+|+++|+++|.+
T Consensus 77 ~fi~vD~t~f~e 88 (443)
T PRK05201 77 PFIKVEATKFTE 88 (443)
T ss_pred hheeecchhhcc
Confidence 899999998885
No 31
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.25 E-value=3.2e-11 Score=143.08 Aligned_cols=138 Identities=17% Similarity=0.155 Sum_probs=86.4
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..|+||++++..|.+++...| -...+||+||+|+|||++|++||+.+++.. .....-|..+.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----------------l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~-~~~~~pCg~C~ 77 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----------------LHHAYLFSGTRGVGKTTIARLLAKGLNCET-GITATPCGECD 77 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----------------CCeEEEEECCCCCCHHHHHHHHHHhhhhcc-CCCCCCCCCCH
Confidence 458999999999998887643 235689999999999999999999997631 10000011110
Q ss_pred CcCCCccccccccccCCCCCC-chHH--HHHHHHHc----CCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceee
Q 003038 698 STRADSTEDSRNKRSRDEQSC-SYIE--RFAEAVSN----NPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVS 770 (854)
Q Consensus 698 ~~~~~s~e~~~~~rl~~~~g~-g~~e--~L~eav~~----~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~ 770 (854)
.+.......|.--..+.+... +.++ .|.+.+.. .+++|+||||+|+++...+|.||+.||+ .
T Consensus 78 ~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEE-----------P 146 (647)
T PRK07994 78 NCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-----------P 146 (647)
T ss_pred HHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHc-----------C
Confidence 000000001100000111111 3333 44454443 4578999999999999999999999997 2
Q ss_pred cCCeEEEEecCCCC
Q 003038 771 LGDAIVILSCESFS 784 (854)
Q Consensus 771 ~~~aIiIlTsn~f~ 784 (854)
-.+++|||+|+.-.
T Consensus 147 p~~v~FIL~Tt~~~ 160 (647)
T PRK07994 147 PEHVKFLLATTDPQ 160 (647)
T ss_pred CCCeEEEEecCCcc
Confidence 34667999886533
No 32
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=2.9e-11 Score=138.22 Aligned_cols=148 Identities=16% Similarity=0.113 Sum_probs=91.2
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..|+||++++..|..++...+ -.+.+||+||+|+|||++|+.||+.++..... ...-|..+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----------------i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~-~~~pCg~C~ 79 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----------------IGHAYIFFGPRGVGKTTIARILAKRLNCENPI-GNEPCNECT 79 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----------------CCeEEEEECCCCCCHHHHHHHHHHhcCccccc-CccccCCCc
Confidence 458999999999888887532 23469999999999999999999999653210 000111111
Q ss_pred CcCCCccccc-cccccCCC-CCCchHH--HHHHHHHc----CCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCcee
Q 003038 698 STRADSTEDS-RNKRSRDE-QSCSYIE--RFAEAVSN----NPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEV 769 (854)
Q Consensus 698 ~~~~~s~e~~-~~~rl~~~-~g~g~~e--~L~eav~~----~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v 769 (854)
.+.......+ .+- .+.+ ...|..+ .+.+.+.. ..+.|++|||+|+++.+.+|.||+.||+-
T Consensus 80 sC~~i~~g~~~dvi-EIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEP---------- 148 (484)
T PRK14956 80 SCLEITKGISSDVL-EIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEP---------- 148 (484)
T ss_pred HHHHHHccCCccce-eechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcC----------
Confidence 0000000000 000 0111 1113433 34444443 45789999999999999999999999862
Q ss_pred ecCCeEEEEecCCCCC-CCCCCCCCcc
Q 003038 770 SLGDAIVILSCESFSS-RSRACSPPTK 795 (854)
Q Consensus 770 ~~~~aIiIlTsn~f~~-~s~~~sp~~~ 795 (854)
-.+++|||+|+.... ..+..|.|++
T Consensus 149 -p~~viFILaTte~~kI~~TI~SRCq~ 174 (484)
T PRK14956 149 -PAHIVFILATTEFHKIPETILSRCQD 174 (484)
T ss_pred -CCceEEEeecCChhhccHHHHhhhhe
Confidence 246789998876433 3444566653
No 33
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=2.9e-11 Score=145.41 Aligned_cols=138 Identities=14% Similarity=0.147 Sum_probs=85.7
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..|+||++++..|.+++...| -...+||+||+|+|||++||+||+.|++... .--..|..+.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----------------l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~-~~~~pCg~C~ 77 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----------------LHHAYLFTGTRGVGKTSLARLFAKGLNCEQG-VTATPCGVCS 77 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----------------CCeEEEEECCCCCCHHHHHHHHHHhccCccC-CCCCCCCCch
Confidence 458999999999988887532 2456799999999999999999999976421 0000111111
Q ss_pred CcCCCccccccccccCCCCC-CchHH--HHHHHHHc----CCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceee
Q 003038 698 STRADSTEDSRNKRSRDEQS-CSYIE--RFAEAVSN----NPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVS 770 (854)
Q Consensus 698 ~~~~~s~e~~~~~rl~~~~g-~g~~e--~L~eav~~----~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~ 770 (854)
.+.......|..--.+.+.. .+..+ .|.+.+.. .+++||||||+|+++...+|.||+.||+.
T Consensus 78 sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEP----------- 146 (944)
T PRK14949 78 SCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEP----------- 146 (944)
T ss_pred HHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcc-----------
Confidence 00000000010000011111 13332 45555544 45789999999999999999999999972
Q ss_pred cCCeEEEEecCCCC
Q 003038 771 LGDAIVILSCESFS 784 (854)
Q Consensus 771 ~~~aIiIlTsn~f~ 784 (854)
-.+++|||+|+...
T Consensus 147 P~~vrFILaTTe~~ 160 (944)
T PRK14949 147 PEHVKFLLATTDPQ 160 (944)
T ss_pred CCCeEEEEECCCch
Confidence 23566888776543
No 34
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.22 E-value=2e-11 Score=122.66 Aligned_cols=139 Identities=13% Similarity=0.158 Sum_probs=94.9
Q ss_pred ccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCc
Q 003038 620 VPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSST 699 (854)
Q Consensus 620 V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~ 699 (854)
++|.+.++..+...+.+.-. ....+|++|++|+||+.+|++|...-.....+|+.+||+.+.
T Consensus 1 liG~s~~m~~~~~~~~~~a~----------------~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~-- 62 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----------------SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALP-- 62 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----------------STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS---
T ss_pred CEeCCHHHHHHHHHHHHHhC----------------CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhh--
Confidence 57889888888888776522 125789999999999999999999776678899999999886
Q ss_pred CCCccccccccccCC-CCC-C-chHHHHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeecCCeEE
Q 003038 700 RADSTEDSRNKRSRD-EQS-C-SYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDAIV 776 (854)
Q Consensus 700 ~~~s~e~~~~~rl~~-~~g-~-g~~e~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIi 776 (854)
++.....+.+ ..+ + |-...-...+.......+|||||+.+++.+|..|+++|++|.++--.+.+.--.|+.|
T Consensus 63 -----~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~Ri 137 (168)
T PF00158_consen 63 -----EELLESELFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRI 137 (168)
T ss_dssp -----HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEE
T ss_pred -----cchhhhhhhccccccccccccccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceE
Confidence 2221111211 000 0 1000012455667789999999999999999999999999999865444444459999
Q ss_pred EEecC
Q 003038 777 ILSCE 781 (854)
Q Consensus 777 IlTsn 781 (854)
|+||+
T Consensus 138 I~st~ 142 (168)
T PF00158_consen 138 IASTS 142 (168)
T ss_dssp EEEES
T ss_pred EeecC
Confidence 99886
No 35
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.22 E-value=2.8e-11 Score=121.05 Aligned_cols=131 Identities=17% Similarity=0.168 Sum_probs=79.9
Q ss_pred ccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCC
Q 003038 622 WQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRA 701 (854)
Q Consensus 622 GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~ 701 (854)
||+++++.+.+.+...+ -...+||+||+|+||+++|+++|+.+++....-. -+........
T Consensus 1 gq~~~~~~L~~~~~~~~-----------------l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~--~c~~c~~c~~ 61 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----------------LPHALLFHGPSGSGKKTLALAFARALLCSNPNED--PCGECRSCRR 61 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------------------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT----SSSHHHHH
T ss_pred CcHHHHHHHHHHHHcCC-----------------cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC--CCCCCHHHHH
Confidence 89999999998887642 2457999999999999999999999998653311 0000000000
Q ss_pred CccccccccccCCCCC----CchHH--HHHHHHHc----CCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeec
Q 003038 702 DSTEDSRNKRSRDEQS----CSYIE--RFAEAVSN----NPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSL 771 (854)
Q Consensus 702 ~s~e~~~~~rl~~~~g----~g~~e--~L~eav~~----~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~ 771 (854)
.....|.--..+.+.+ .+.++ .+.+.+.. ++++||+|||+|+++.+.+|+||+.||+. -
T Consensus 62 ~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEep-----------p 130 (162)
T PF13177_consen 62 IEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEP-----------P 130 (162)
T ss_dssp HHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHST-----------T
T ss_pred HHhccCcceEEEecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCC-----------C
Confidence 0000010000111111 13332 34444433 46789999999999999999999999973 3
Q ss_pred CCeEEEEecCC
Q 003038 772 GDAIVILSCES 782 (854)
Q Consensus 772 ~~aIiIlTsn~ 782 (854)
.+++|||+|+.
T Consensus 131 ~~~~fiL~t~~ 141 (162)
T PF13177_consen 131 ENTYFILITNN 141 (162)
T ss_dssp TTEEEEEEES-
T ss_pred CCEEEEEEECC
Confidence 68889998853
No 36
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=6.6e-10 Score=128.16 Aligned_cols=119 Identities=11% Similarity=0.085 Sum_probs=80.0
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeC
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLG 305 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfid 305 (854)
+.-|++|.|++|+|||.+|++++....+. ..+++.-++++.+......-+..-+..++.+...+ .|.|+++|
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~------~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~--~PSiIvLD 501 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKD------LIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWY--APSIIVLD 501 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccc------cceEEEEEechhccchhHHHHHHHHHHHHHHHHhh--CCcEEEEc
Confidence 67899999999999999999999988743 24577777887776555566777788888888877 79999999
Q ss_pred ccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecC
Q 003038 306 DLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIAT 354 (854)
Q Consensus 306 el~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT 354 (854)
+++.| +.....+++-+.++-.+-+...++-.... ..++ .+.+||+..
T Consensus 502 dld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~-~~~~-~ia~Iat~q 549 (952)
T KOG0735|consen 502 DLDCLASASSNENGQDGVVSERLAAFLNQVIKIYL-KRNR-KIAVIATGQ 549 (952)
T ss_pred chhhhhccCcccCCcchHHHHHHHHHHHHHHHHHH-ccCc-EEEEEEech
Confidence 99999 73322222212223333333333333321 1233 578887754
No 37
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=2.9e-11 Score=131.30 Aligned_cols=136 Identities=15% Similarity=0.139 Sum_probs=96.9
Q ss_pred ccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEE
Q 003038 224 SKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLN 303 (854)
Q Consensus 224 r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILf 303 (854)
||-=+.+|+|||||+|||-++++||-. .+..|+.++.+.|.+.||||.|+-++=||+.++.+ .|.++|
T Consensus 242 rrPWkgvLm~GPPGTGKTlLAKAvATE----------c~tTFFNVSsstltSKwRGeSEKlvRlLFemARfy--APStIF 309 (491)
T KOG0738|consen 242 RRPWKGVLMVGPPGTGKTLLAKAVATE----------CGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFY--APSTIF 309 (491)
T ss_pred ccccceeeeeCCCCCcHHHHHHHHHHh----------hcCeEEEechhhhhhhhccchHHHHHHHHHHHHHh--CCceee
Confidence 455678999999999999999999976 57899999999999999999999999999999998 799999
Q ss_pred eCccccc-cccccccccccccchhhhHHHHHHHhhc-ccCCC---CceEEEEEecCHHHHHHhhccCCchhhhhcc-CCC
Q 003038 304 LGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLV-CGIGE---NARFWLMGIATFQSYMRCKSGHPSLETLWSL-HPL 377 (854)
Q Consensus 304 idel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll-~~~~g---~g~l~lIgatT~~ey~k~~~~~pale~~~~~-~~v 377 (854)
||||+.| ..+++.++. .+..+.-.++--.+ +..+. .-.|.+++||++.. ..|-||.| || ..|
T Consensus 310 iDEIDslcs~RG~s~EH-----EaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PW-----diDEAlrR--RlEKRI 377 (491)
T KOG0738|consen 310 IDEIDSLCSQRGGSSEH-----EASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPW-----DIDEALRR--RLEKRI 377 (491)
T ss_pred hhhHHHHHhcCCCccch-----hHHHHHHHHHHHHhhccccccccceeEEEEeccCCCc-----chHHHHHH--HHhhhe
Confidence 9999999 554432111 11223333433333 21111 11366777777543 46777777 66 344
Q ss_pred CCCCch
Q 003038 378 TIPAGS 383 (854)
Q Consensus 378 ~i~~~s 383 (854)
.||=|+
T Consensus 378 yIPLP~ 383 (491)
T KOG0738|consen 378 YIPLPD 383 (491)
T ss_pred eeeCCC
Confidence 454443
No 38
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=6.2e-11 Score=139.81 Aligned_cols=137 Identities=13% Similarity=0.123 Sum_probs=87.2
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..|+||++++..|.+.+... +..+.+||+||+|+|||++|++||+.++..... ..--|..+.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~-----------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~-~~~pCg~C~ 74 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAG-----------------RINHAYLFSGPRGCGKTSSARILARSLNCAQGP-TATPCGVCE 74 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCC-CCCcccccH
Confidence 45799999999999988752 234578999999999999999999999753210 000111111
Q ss_pred CcCCCcccccccccc--CCCCCC-chHH--HHHHHHHc----CCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCce
Q 003038 698 STRADSTEDSRNKRS--RDEQSC-SYIE--RFAEAVSN----NPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDE 768 (854)
Q Consensus 698 ~~~~~s~e~~~~~rl--~~~~g~-g~~e--~L~eav~~----~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~ 768 (854)
.+.......+..... +..... |.++ .|.+.+.. .+|+||+|||+|.++...+|.|++.||+
T Consensus 75 ~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEE---------- 144 (584)
T PRK14952 75 SCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEE---------- 144 (584)
T ss_pred HHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhc----------
Confidence 111000000000011 122112 4443 45555544 4588999999999999999999999997
Q ss_pred eecCCeEEEEecCCC
Q 003038 769 VSLGDAIVILSCESF 783 (854)
Q Consensus 769 v~~~~aIiIlTsn~f 783 (854)
.-.+++|||+|+..
T Consensus 145 -pp~~~~fIL~tte~ 158 (584)
T PRK14952 145 -PPEHLIFIFATTEP 158 (584)
T ss_pred -CCCCeEEEEEeCCh
Confidence 22477899877644
No 39
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=9.6e-11 Score=136.95 Aligned_cols=136 Identities=15% Similarity=0.150 Sum_probs=86.4
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..|+||++++..|.+++...+ -.+.+||+||+|+|||++|+.||+.+++... .-.--|..+.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----------------l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~-~~~~pCg~C~ 77 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----------------LHHAYLFTGTRGVGKTTISRILAKCLNCEKG-VSANPCNDCE 77 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----------------CCeeEEEECCCCCCHHHHHHHHHHHhcCCCC-CCcccCCCCH
Confidence 458999999999999987632 3457999999999999999999999975321 1000011111
Q ss_pred CcCCCccccccccccCCCCCC-chHH--HHHHHHHc----CCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceee
Q 003038 698 STRADSTEDSRNKRSRDEQSC-SYIE--RFAEAVSN----NPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVS 770 (854)
Q Consensus 698 ~~~~~s~e~~~~~rl~~~~g~-g~~e--~L~eav~~----~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~ 770 (854)
.+.......|.--..+.+... |..+ .+.+.+.. .+|+|++|||+|++++..+|.|++.||+-
T Consensus 78 ~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEep----------- 146 (509)
T PRK14958 78 NCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEP----------- 146 (509)
T ss_pred HHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhcc-----------
Confidence 000000001100000111112 4433 44555444 45789999999999999999999999962
Q ss_pred cCCeEEEEecCC
Q 003038 771 LGDAIVILSCES 782 (854)
Q Consensus 771 ~~~aIiIlTsn~ 782 (854)
-.+++|||+|+.
T Consensus 147 p~~~~fIlattd 158 (509)
T PRK14958 147 PSHVKFILATTD 158 (509)
T ss_pred CCCeEEEEEECC
Confidence 356778887764
No 40
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.19 E-value=3.3e-11 Score=129.79 Aligned_cols=139 Identities=14% Similarity=0.052 Sum_probs=98.4
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeC
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLG 305 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfid 305 (854)
...|++|+||||+|||++|+.+|..+..-. .+....++.++.+.+.+.|.|+.+.+++++++.+. +.|||||
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~---~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a~-----~~VL~ID 112 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMN---VLSKGHLIEVERADLVGEYIGHTAQKTREVIKKAL-----GGVLFID 112 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcC---cccCCceEEecHHHhhhhhccchHHHHHHHHHhcc-----CCEEEEe
Confidence 345789999999999999999998875422 22344788899999988899999999998887653 3489999
Q ss_pred ccccc-cccccccccccccchhhhHHHHHHHhhccc-CCCCceEEEEEecCHHHHHHhhccCCchhhhhcc-CCCCCCCc
Q 003038 306 DLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG-IGENARFWLMGIATFQSYMRCKSGHPSLETLWSL-HPLTIPAG 382 (854)
Q Consensus 306 el~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~-~~v~i~~~ 382 (854)
|+|.| ..+... ++...+..|+.. ...++.+.+|+++++.+...+...+|+|.+ || +.|.+++.
T Consensus 113 E~~~L~~~~~~~------------~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~ 178 (261)
T TIGR02881 113 EAYSLARGGEKD------------FGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDY 178 (261)
T ss_pred chhhhccCCccc------------hHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHh--ccceEEEECCC
Confidence 99999 422110 111223334432 222336888888887766666778999999 77 45777766
Q ss_pred hHHH
Q 003038 383 SLSL 386 (854)
Q Consensus 383 sl~~ 386 (854)
+...
T Consensus 179 ~~~e 182 (261)
T TIGR02881 179 TVEE 182 (261)
T ss_pred CHHH
Confidence 5443
No 41
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=7.3e-11 Score=137.00 Aligned_cols=159 Identities=14% Similarity=0.206 Sum_probs=113.2
Q ss_pred hHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCC
Q 003038 605 NSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGS 684 (854)
Q Consensus 605 ~~e~l~~L~~~L~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~ 684 (854)
+...|+...+.|.+.=.|=+++.+.|.+.+.-.+- .+ ......++|+||||||||.|++.+|+.+
T Consensus 310 ~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l--~~----------~~kGpILcLVGPPGVGKTSLgkSIA~al--- 374 (782)
T COG0466 310 DKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKL--TK----------KLKGPILCLVGPPGVGKTSLGKSIAKAL--- 374 (782)
T ss_pred hhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHH--hc----------cCCCcEEEEECCCCCCchhHHHHHHHHh---
Confidence 55678899999999999999999999887653221 00 0112379999999999999999999999
Q ss_pred CCceEEEccccccCcCCCccccccccccCCCCCCchH-HHHHHHHHc----CCCEEEEEecCCCCCHHHH----HHHHHh
Q 003038 685 HNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYI-ERFAEAVSN----NPHRVFLIEDVEQADYCSQ----KGFKRA 755 (854)
Q Consensus 685 ~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~-e~L~eav~~----~p~~ViliDEieka~~~v~----~~Ll~~ 755 (854)
...|+|+.+....+-..+. .|+.. .+ |.. .++.+.+++ || ||+||||||+..+.+ .+||.+
T Consensus 375 ~RkfvR~sLGGvrDEAEIR--GHRRT-YI-----GamPGrIiQ~mkka~~~NP--v~LLDEIDKm~ss~rGDPaSALLEV 444 (782)
T COG0466 375 GRKFVRISLGGVRDEAEIR--GHRRT-YI-----GAMPGKIIQGMKKAGVKNP--VFLLDEIDKMGSSFRGDPASALLEV 444 (782)
T ss_pred CCCEEEEecCccccHHHhc--ccccc-cc-----ccCChHHHHHHHHhCCcCC--eEEeechhhccCCCCCChHHHHHhh
Confidence 5789999887655210000 12110 11 111 145555543 55 999999999977644 589999
Q ss_pred hh---cCeEecCC-CceeecCCeEEEEecCCCCCCCC
Q 003038 756 IE---SGRIVTSS-GDEVSLGDAIVILSCESFSSRSR 788 (854)
Q Consensus 756 le---~G~l~d~~-G~~v~~~~aIiIlTsn~f~~~s~ 788 (854)
+| +-.|.|.. .-..|+++++||.|+|+.++.+.
T Consensus 445 LDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~ 481 (782)
T COG0466 445 LDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPA 481 (782)
T ss_pred cCHhhcCchhhccccCccchhheEEEeecCccccCCh
Confidence 97 57777764 56789999999999998876543
No 42
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.18 E-value=9.9e-11 Score=142.98 Aligned_cols=140 Identities=14% Similarity=0.096 Sum_probs=87.7
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..||||++++..|.+.+...| -.+.+||+||+|+|||++|++||+.|+..... ..--|..+.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----------------i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~-~~~pCg~C~ 76 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----------------INHAYLFSGPRGCGKTSSARILARSLNCVEGP-TSTPCGECD 76 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----------------CCceEEEECCCCCCHHHHHHHHHHHhCcccCC-CCCCCcccH
Confidence 458999999999999887532 23579999999999999999999999742210 000111111
Q ss_pred CcCCCcccccccccc--CCCCCC-chHH--HHHHHHH----cCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCce
Q 003038 698 STRADSTEDSRNKRS--RDEQSC-SYIE--RFAEAVS----NNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDE 768 (854)
Q Consensus 698 ~~~~~s~e~~~~~rl--~~~~g~-g~~e--~L~eav~----~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~ 768 (854)
++.......+....+ +..... |.++ .|.+.+. ...|+||||||+|+++...+|.||++||+
T Consensus 77 sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEE---------- 146 (824)
T PRK07764 77 SCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEE---------- 146 (824)
T ss_pred HHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhC----------
Confidence 110000000000001 111111 3333 3333332 35689999999999999999999999997
Q ss_pred eecCCeEEEEecCCCCCC
Q 003038 769 VSLGDAIVILSCESFSSR 786 (854)
Q Consensus 769 v~~~~aIiIlTsn~f~~~ 786 (854)
.-.+++|||+|+..+..
T Consensus 147 -pP~~~~fIl~tt~~~kL 163 (824)
T PRK07764 147 -PPEHLKFIFATTEPDKV 163 (824)
T ss_pred -CCCCeEEEEEeCChhhh
Confidence 22477899988765543
No 43
>CHL00181 cbbX CbbX; Provisional
Probab=99.18 E-value=1.2e-10 Score=126.86 Aligned_cols=139 Identities=12% Similarity=0.162 Sum_probs=96.0
Q ss_pred hHHHHHHHHHhhcCcccccHHHHHHHHHHHHH-------hhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHH
Q 003038 605 NSENLTSLCNALEKKVPWQKDTVYDIANTVLK-------CRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKEL 677 (854)
Q Consensus 605 ~~e~l~~L~~~L~~~V~GQ~~av~~Ia~~v~~-------~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~L 677 (854)
+...++.+.+.|.+.++|++++...|...+.. .+.|+..+ ++...++|+||||||||++|+++
T Consensus 10 ~~~~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~----------~~~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 10 EKTQIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSS----------NPGLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred cccCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCC----------CCCceEEEECCCCCCHHHHHHHH
Confidence 34557789999999999999988877665421 23454332 33447999999999999999999
Q ss_pred HHHHhCC----CCceEEEccccccCcCCCccccccccccCCCCCCchH-HHHHHHHHcCCCEEEEEecCCCC--------
Q 003038 678 ARLVFGS----HNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYI-ERFAEAVSNNPHRVFLIEDVEQA-------- 744 (854)
Q Consensus 678 A~~lfg~----~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~-e~L~eav~~~p~~ViliDEieka-------- 744 (854)
|+.++.. ...++.++.+.+. .. +. |.. ....+.+.+....|+||||++.+
T Consensus 80 a~~~~~~g~~~~~~~~~v~~~~l~-------~~-----~~-----g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~ 142 (287)
T CHL00181 80 ADILYKLGYIKKGHLLTVTRDDLV-------GQ-----YI-----GHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDNERD 142 (287)
T ss_pred HHHHHHcCCCCCCceEEecHHHHH-------HH-----Hh-----ccchHHHHHHHHHccCCEEEEEccchhccCCCccc
Confidence 9988642 2346666644332 00 01 211 13445556666789999999985
Q ss_pred -CHHHHHHHHHhhhcCeEecCCCceeecCCeEEEEecC
Q 003038 745 -DYCSQKGFKRAIESGRIVTSSGDEVSLGDAIVILSCE 781 (854)
Q Consensus 745 -~~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn 781 (854)
.+++++.|++.|++++ .+.+||++++
T Consensus 143 ~~~e~~~~L~~~me~~~-----------~~~~vI~ag~ 169 (287)
T CHL00181 143 YGSEAIEILLQVMENQR-----------DDLVVIFAGY 169 (287)
T ss_pred hHHHHHHHHHHHHhcCC-----------CCEEEEEeCC
Confidence 5789999999998642 5678888764
No 44
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=7.3e-11 Score=134.03 Aligned_cols=127 Identities=9% Similarity=0.107 Sum_probs=97.0
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeC
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLG 305 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfid 305 (854)
....++|.||||||||-+++++|.. .++.|+++-...|.++|.||.|.-++.+|..++.+ .|||+|+|
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANE----------ag~NFisVKGPELlNkYVGESErAVR~vFqRAR~s--aPCVIFFD 611 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANE----------AGANFISVKGPELLNKYVGESERAVRQVFQRARAS--APCVIFFD 611 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhh----------ccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcC--CCeEEEec
Confidence 4667999999999999999999976 68899999999999999999999999999999986 79999999
Q ss_pred ccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchhhhhccC
Q 003038 306 DLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLETLWSLH 375 (854)
Q Consensus 306 el~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~~ 375 (854)
||+.| ..++.+. .....+.+..+-.=|-+-.+|..+.+||||+-.. ..|||+-|--||.
T Consensus 612 EiDaL~p~R~~~~------s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPD-----iIDpAiLRPGRlD 671 (802)
T KOG0733|consen 612 EIDALVPRRSDEG------SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPD-----IIDPAILRPGRLD 671 (802)
T ss_pred chhhcCcccCCCC------chhHHHHHHHHHHHhcccccccceEEEeecCCCc-----ccchhhcCCCccC
Confidence 99999 5443210 1122234333222221111223599999999766 4799998866663
No 45
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=1.2e-10 Score=136.13 Aligned_cols=135 Identities=15% Similarity=0.140 Sum_probs=84.0
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..|+||++++..+.+++... +....+||+||+|+|||++|+.||+.++..... -.-.|..+.
T Consensus 16 ~diiGq~~~v~~L~~~i~~~-----------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~-~~~pCg~C~ 77 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQ-----------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGV-TAEPCNKCE 77 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCC-CCCCCcccH
Confidence 45899999999998888653 224578999999999999999999999752110 000011110
Q ss_pred CcCCCccccc-cccccCCCCC-CchHH--HHHHHHHc----CCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCcee
Q 003038 698 STRADSTEDS-RNKRSRDEQS-CSYIE--RFAEAVSN----NPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEV 769 (854)
Q Consensus 698 ~~~~~s~e~~-~~~rl~~~~g-~g~~e--~L~eav~~----~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v 769 (854)
.+.......| .+-. +.... .|..+ .+.+.+.. ..++||+|||+|+++...++.|++.||+.
T Consensus 78 sC~~i~~~~~~dlie-idaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEep---------- 146 (546)
T PRK14957 78 NCVAINNNSFIDLIE-IDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEP---------- 146 (546)
T ss_pred HHHHHhcCCCCceEE-eecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcC----------
Confidence 0000000000 0000 01111 14433 45455544 45789999999999999999999999973
Q ss_pred ecCCeEEEEecCC
Q 003038 770 SLGDAIVILSCES 782 (854)
Q Consensus 770 ~~~~aIiIlTsn~ 782 (854)
-.+++|||+|+.
T Consensus 147 -p~~v~fIL~Ttd 158 (546)
T PRK14957 147 -PEYVKFILATTD 158 (546)
T ss_pred -CCCceEEEEECC
Confidence 145668887754
No 46
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.16 E-value=2.4e-10 Score=132.43 Aligned_cols=153 Identities=11% Similarity=0.096 Sum_probs=103.7
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhh--CCCeEEE
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCL--GRGIVLN 303 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~--~~~~ILf 303 (854)
..++++|+||||+|||++++++|..+...-.-.......|+.+....+...|.|+.+.+++.+++.++... +.++|||
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIf 294 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVF 294 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEE
Confidence 56789999999999999999999987432110111234566777778888899999999999999988632 4689999
Q ss_pred eCccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchhhhhccC-CCCCCC
Q 003038 304 LGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLETLWSLH-PLTIPA 381 (854)
Q Consensus 304 idel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~~-~v~i~~ 381 (854)
|||++.+ ..+..+. .+ ......+..+-+.+..-...+.+.+||||+..+ ..||||-|-.||. .|.++.
T Consensus 295 IDEiD~L~~~R~~~~---s~--d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d-----~LDpALlRpGRfD~~I~~~~ 364 (512)
T TIGR03689 295 FDEMDSIFRTRGSGV---SS--DVETTVVPQLLSELDGVESLDNVIVIGASNRED-----MIDPAILRPGRLDVKIRIER 364 (512)
T ss_pred EehhhhhhcccCCCc---cc--hHHHHHHHHHHHHhcccccCCceEEEeccCChh-----hCCHhhcCccccceEEEeCC
Confidence 9999999 6543210 00 001122334444442211123699999998866 3599998855663 378887
Q ss_pred chHHHHh
Q 003038 382 GSLSLSL 388 (854)
Q Consensus 382 ~sl~~al 388 (854)
|+.....
T Consensus 365 Pd~e~r~ 371 (512)
T TIGR03689 365 PDAEAAA 371 (512)
T ss_pred CCHHHHH
Confidence 7765543
No 47
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=1.2e-10 Score=137.86 Aligned_cols=137 Identities=15% Similarity=0.180 Sum_probs=87.2
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCc----eEEEcc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNN----FVSIAL 693 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~----~i~id~ 693 (854)
..|+||++++..|.+++...| -...+||+||+|+|||++|+.||+.++..... ...--|
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----------------l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pC 78 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----------------LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPC 78 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----------------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCC
Confidence 457999999999999887643 24578999999999999999999999742110 000001
Q ss_pred ccccCcCCCccccccccccCCCC-CCchHH--HHHHHHHcCC----CEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCC
Q 003038 694 SSFSSTRADSTEDSRNKRSRDEQ-SCSYIE--RFAEAVSNNP----HRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSG 766 (854)
Q Consensus 694 s~~~~~~~~s~e~~~~~rl~~~~-g~g~~e--~L~eav~~~p----~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G 766 (854)
..+..+.......|.-...+.+. ..|.++ .+.+.+...| |+||+|||+|+++...+|.|++.||+.
T Consensus 79 g~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEP------- 151 (618)
T PRK14951 79 GVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEP------- 151 (618)
T ss_pred CccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccC-------
Confidence 11110000000111100011111 124443 4556666555 799999999999999999999999972
Q ss_pred ceeecCCeEEEEecCC
Q 003038 767 DEVSLGDAIVILSCES 782 (854)
Q Consensus 767 ~~v~~~~aIiIlTsn~ 782 (854)
-.+++|||+|+.
T Consensus 152 ----P~~~~fIL~Ttd 163 (618)
T PRK14951 152 ----PEYLKFVLATTD 163 (618)
T ss_pred ----CCCeEEEEEECC
Confidence 246778888754
No 48
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.15 E-value=1.8e-10 Score=131.35 Aligned_cols=147 Identities=16% Similarity=0.201 Sum_probs=101.3
Q ss_pred HHHHHHHHHhhcCcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCC
Q 003038 606 SENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSH 685 (854)
Q Consensus 606 ~e~l~~L~~~L~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~ 685 (854)
.+.+..|.+.|.+.|+||+++|+.+..++.. .+++||.||||+|||.+|++|+..+-..
T Consensus 8 ~~~i~~l~~~l~~~i~gre~vI~lll~aala--------------------g~hVLL~GpPGTGKT~LAraLa~~~~~~- 66 (498)
T PRK13531 8 AERISRLSSALEKGLYERSHAIRLCLLAALS--------------------GESVFLLGPPGIAKSLIARRLKFAFQNA- 66 (498)
T ss_pred HHHHHHHHHHHhhhccCcHHHHHHHHHHHcc--------------------CCCEEEECCCChhHHHHHHHHHHHhccc-
Confidence 4678899999999999999999988887653 3578999999999999999999987433
Q ss_pred CceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCC---CEEEEEecCCCCCHHHHHHHHHhhhcCeEe
Q 003038 686 NNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNP---HRVFLIEDVEQADYCSQKGFKRAIESGRIV 762 (854)
Q Consensus 686 ~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p---~~ViliDEieka~~~v~~~Ll~~le~G~l~ 762 (854)
..|..+... |+.+.+.- +..++..+.. .| .| . .....| ..|+|+|||.++++.+|+.|+++|+++.++
T Consensus 67 ~~F~~~~~~-fttp~DLf-G~l~i~~~~~-~g-~f----~-r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t 137 (498)
T PRK13531 67 RAFEYLMTR-FSTPEEVF-GPLSIQALKD-EG-RY----Q-RLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFR 137 (498)
T ss_pred Ccceeeeee-ecCcHHhc-CcHHHhhhhh-cC-ch----h-hhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEe
Confidence 255544332 11000000 0000000000 00 01 0 111111 239999999999999999999999999999
Q ss_pred cCCCceeecCCeEEEEecCCC
Q 003038 763 TSSGDEVSLGDAIVILSCESF 783 (854)
Q Consensus 763 d~~G~~v~~~~aIiIlTsn~f 783 (854)
. .|+...+.--+||.+||..
T Consensus 138 ~-g~~~~~lp~rfiv~ATN~L 157 (498)
T PRK13531 138 N-GAHEEKIPMRLLVTASNEL 157 (498)
T ss_pred c-CCeEEeCCCcEEEEECCCC
Confidence 6 5788888888888888843
No 49
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=1.3e-10 Score=136.36 Aligned_cols=135 Identities=14% Similarity=0.158 Sum_probs=84.2
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..|+||++++..|.+++... +....+||+||+|+|||++|++||+.++... ..-..-|..+.
T Consensus 15 ddVIGQe~vv~~L~~aI~~g-----------------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~-~~~~~pCg~C~ 76 (702)
T PRK14960 15 NELVGQNHVSRALSSALERG-----------------RLHHAYLFTGTRGVGKTTIARILAKCLNCET-GVTSTPCEVCA 76 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCc-CCCCCCCccCH
Confidence 45899999999999988743 3346889999999999999999999996421 10000011111
Q ss_pred CcCCCccccc-cccccCCCCCC-chHH--HHHHHHHc----CCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCcee
Q 003038 698 STRADSTEDS-RNKRSRDEQSC-SYIE--RFAEAVSN----NPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEV 769 (854)
Q Consensus 698 ~~~~~s~e~~-~~~rl~~~~g~-g~~e--~L~eav~~----~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v 769 (854)
.+.....+.| .+-. +.+... +..+ .+.+.+.. ..++|++|||+|+++...++.|++.||+.
T Consensus 77 sC~~I~~g~hpDviE-IDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEP---------- 145 (702)
T PRK14960 77 TCKAVNEGRFIDLIE-IDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEP---------- 145 (702)
T ss_pred HHHHHhcCCCCceEE-ecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcC----------
Confidence 0000000011 0000 111111 3332 34444433 35789999999999999999999999972
Q ss_pred ecCCeEEEEecCC
Q 003038 770 SLGDAIVILSCES 782 (854)
Q Consensus 770 ~~~~aIiIlTsn~ 782 (854)
-.+++|||+|+.
T Consensus 146 -P~~v~FILaTtd 157 (702)
T PRK14960 146 -PEHVKFLFATTD 157 (702)
T ss_pred -CCCcEEEEEECC
Confidence 145678888864
No 50
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=2.6e-10 Score=131.73 Aligned_cols=138 Identities=14% Similarity=0.096 Sum_probs=87.2
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..|+||++++..+.+++... +....+||+||+|+|||++|+.||+.+......-. -.|..+.
T Consensus 13 ~dliGQe~vv~~L~~a~~~~-----------------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~-~pCg~C~ 74 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLN-----------------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTS-DPCGTCH 74 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----------------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCC-CCccccH
Confidence 45799999999988887653 23458999999999999999999998853211000 0000000
Q ss_pred CcCCCccccc-cccccCCCCCC-chHH--HHHHHHHcCC----CEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCcee
Q 003038 698 STRADSTEDS-RNKRSRDEQSC-SYIE--RFAEAVSNNP----HRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEV 769 (854)
Q Consensus 698 ~~~~~s~e~~-~~~rl~~~~g~-g~~e--~L~eav~~~p----~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v 769 (854)
.+.......| .+.. +.+... |.++ .+.+.+...| ++||+|||+|.++...+|.|++.||+-
T Consensus 75 ~C~~i~~~~~~Dv~e-idaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEeP---------- 143 (491)
T PRK14964 75 NCISIKNSNHPDVIE-IDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEP---------- 143 (491)
T ss_pred HHHHHhccCCCCEEE-EecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCC----------
Confidence 0000000000 0000 111111 4444 4566666555 689999999999999999999999972
Q ss_pred ecCCeEEEEecCCCCC
Q 003038 770 SLGDAIVILSCESFSS 785 (854)
Q Consensus 770 ~~~~aIiIlTsn~f~~ 785 (854)
-.+++|||+|+..+.
T Consensus 144 -p~~v~fIlatte~~K 158 (491)
T PRK14964 144 -APHVKFILATTEVKK 158 (491)
T ss_pred -CCCeEEEEEeCChHH
Confidence 246789998865433
No 51
>PLN03025 replication factor C subunit; Provisional
Probab=99.14 E-value=1.8e-10 Score=127.67 Aligned_cols=116 Identities=13% Similarity=0.229 Sum_probs=78.9
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCC--CceEEEccccc
Q 003038 619 KVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSH--NNFVSIALSSF 696 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~--~~~i~id~s~~ 696 (854)
.|+||++++..|...+... ...+++|+||+|+|||++|+++|+.++|.. ..++.++.+..
T Consensus 14 ~~~g~~~~~~~L~~~~~~~------------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~ 75 (319)
T PLN03025 14 DIVGNEDAVSRLQVIARDG------------------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDD 75 (319)
T ss_pred HhcCcHHHHHHHHHHHhcC------------------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccc
Confidence 4689999988877664421 123689999999999999999999998753 23344443311
Q ss_pred cCcCCCccccccccccCCCCCCchHH-HHHHHHH------cCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCcee
Q 003038 697 SSTRADSTEDSRNKRSRDEQSCSYIE-RFAEAVS------NNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEV 769 (854)
Q Consensus 697 ~~~~~~s~e~~~~~rl~~~~g~g~~e-~L~eav~------~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v 769 (854)
. +..... .+..... ...+.||+|||+|+++...|+.|++.||..
T Consensus 76 ~-------------------~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~---------- 126 (319)
T PLN03025 76 R-------------------GIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIY---------- 126 (319)
T ss_pred c-------------------cHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcc----------
Confidence 1 001111 1111111 134789999999999999999999999851
Q ss_pred ecCCeEEEEecCC
Q 003038 770 SLGDAIVILSCES 782 (854)
Q Consensus 770 ~~~~aIiIlTsn~ 782 (854)
-.++.|||+||.
T Consensus 127 -~~~t~~il~~n~ 138 (319)
T PLN03025 127 -SNTTRFALACNT 138 (319)
T ss_pred -cCCceEEEEeCC
Confidence 134668999984
No 52
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.14 E-value=2.7e-10 Score=108.37 Aligned_cols=118 Identities=12% Similarity=0.142 Sum_probs=87.1
Q ss_pred ceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeCcccc
Q 003038 230 FVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLGDLEW 309 (854)
Q Consensus 230 ~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfidel~~ 309 (854)
++|+||||+|||++|+.+|+.+ +.+++.++...+.+.+.++.++++..++..++.. .+++||||||+|.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l----------~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~vl~iDe~d~ 69 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL----------GFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKS-AKPCVLFIDEIDK 69 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT----------TSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHT-STSEEEEEETGGG
T ss_pred CEEECcCCCCeeHHHHHHHhhc----------cccccccccccccccccccccccccccccccccc-ccceeeeeccchh
Confidence 5899999999999999999885 5789999999999889999999999999999876 3389999999999
Q ss_pred c-cccccccccccccchhhhHHHHHHHhhccc-CCCCceEEEEEecCHHHHHHhhccCCchh
Q 003038 310 A-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG-IGENARFWLMGIATFQSYMRCKSGHPSLE 369 (854)
Q Consensus 310 l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~g~g~l~lIgatT~~ey~k~~~~~pale 369 (854)
+ ....... ..........+.+.+.. ...++.+.+|++|+..+ ..+|+|.
T Consensus 70 l~~~~~~~~------~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~-----~i~~~l~ 120 (132)
T PF00004_consen 70 LFPKSQPSS------SSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPD-----KIDPALL 120 (132)
T ss_dssp TSHHCSTSS------SHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGG-----GSCHHHH
T ss_pred ccccccccc------ccccccccceeeecccccccccccceeEEeeCChh-----hCCHhHH
Confidence 9 5441110 11112233444444522 22123699999998722 4677777
No 53
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=99.14 E-value=1.4e-10 Score=109.56 Aligned_cols=107 Identities=21% Similarity=0.252 Sum_probs=78.3
Q ss_pred HHHHHHHhhcCcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCC--C
Q 003038 608 NLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGS--H 685 (854)
Q Consensus 608 ~l~~L~~~L~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~--~ 685 (854)
++..|+..|.++++||..|++.|..+|......- .| .|| .+|.|+||+||||+.+++.||+.+|.+ .
T Consensus 15 ~~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~~-~p---------~Kp-LVlSfHG~tGtGKn~v~~liA~~ly~~G~~ 83 (127)
T PF06309_consen 15 NITGLEKDLQRNLFGQHLAVEVVVNAIKGHLANP-NP---------RKP-LVLSFHGWTGTGKNFVSRLIAEHLYKSGMK 83 (127)
T ss_pred CHHHHHHHHHHHccCcHHHHHHHHHHHHHHHcCC-CC---------CCC-EEEEeecCCCCcHHHHHHHHHHHHHhcccC
Confidence 4679999999999999999999999999886532 22 366 599999999999999999999999964 4
Q ss_pred CceEEEccccccCcCCCccccccccccCCCCCCchHH----HHHHHHHcCCCEEEEE
Q 003038 686 NNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIE----RFAEAVSNNPHRVFLI 738 (854)
Q Consensus 686 ~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e----~L~eav~~~p~~Vili 738 (854)
.++|..=.+... .++. .....|.+ .+.+.+.++|.++++|
T Consensus 84 S~~V~~f~~~~h-------FP~~------~~v~~Yk~~L~~~I~~~v~~C~rslFIF 127 (127)
T PF06309_consen 84 SPFVHQFIATHH-------FPHN------SNVDEYKEQLKSWIRGNVSRCPRSLFIF 127 (127)
T ss_pred CCceeeeccccc-------CCCc------hHHHHHHHHHHHHHHHHHHhCCcCeeeC
Confidence 555544333211 0110 01115655 4667777899999886
No 54
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=2.2e-10 Score=129.22 Aligned_cols=136 Identities=18% Similarity=0.149 Sum_probs=84.2
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..|+||++++..+.+++... +....+||+||+|+|||++|+++|+.+++.... ..--+..+.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~-----------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~-~~~pc~~c~ 77 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLG-----------------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGI-TSNPCRKCI 77 (363)
T ss_pred hhccChHHHHHHHHHHHHcC-----------------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCC-CCCCCCCCH
Confidence 45899999999998888653 223578999999999999999999999743210 000000000
Q ss_pred CcCCCccccc-cccccCCCCC-CchHH--HHHHHHHcCC----CEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCcee
Q 003038 698 STRADSTEDS-RNKRSRDEQS-CSYIE--RFAEAVSNNP----HRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEV 769 (854)
Q Consensus 698 ~~~~~s~e~~-~~~rl~~~~g-~g~~e--~L~eav~~~p----~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v 769 (854)
.+.......| .+.. +.+.. .+..+ .+.+.+...| ++||+|||+|+++...++.|++.+++.
T Consensus 78 ~c~~~~~~~~~d~~~-~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~---------- 146 (363)
T PRK14961 78 ICKEIEKGLCLDLIE-IDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEP---------- 146 (363)
T ss_pred HHHHHhcCCCCceEE-ecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcC----------
Confidence 0000000000 0000 11111 12322 4555555444 679999999999999999999999972
Q ss_pred ecCCeEEEEecCCC
Q 003038 770 SLGDAIVILSCESF 783 (854)
Q Consensus 770 ~~~~aIiIlTsn~f 783 (854)
-.+++|||+|+..
T Consensus 147 -~~~~~fIl~t~~~ 159 (363)
T PRK14961 147 -PQHIKFILATTDV 159 (363)
T ss_pred -CCCeEEEEEcCCh
Confidence 1366788888643
No 55
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.13 E-value=1.6e-10 Score=137.28 Aligned_cols=136 Identities=14% Similarity=0.131 Sum_probs=88.1
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..|+||++++..+.+++... +....+||+||+|+|||++|++||+.++..... -.--|..+.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~-----------------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~-~~~~c~~c~ 77 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTG-----------------RVAHAFLFTGARGVGKTSTARILAKALNCEQGL-TAEPCNVCP 77 (576)
T ss_pred HHccCcHHHHHHHHHHHHcC-----------------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCC-CCCCCCccH
Confidence 46899999999999988753 234578999999999999999999999753210 000011110
Q ss_pred CcCCCccccc-cccccCCCCC-CchHH--HHHHHHHcCC----CEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCcee
Q 003038 698 STRADSTEDS-RNKRSRDEQS-CSYIE--RFAEAVSNNP----HRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEV 769 (854)
Q Consensus 698 ~~~~~s~e~~-~~~rl~~~~g-~g~~e--~L~eav~~~p----~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v 769 (854)
.+.......+ .+.. +.+.+ .|..+ .|.+.+...| |+||+|||+|+++...+|.|+++||+-
T Consensus 78 ~c~~i~~g~~~d~~e-id~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEep---------- 146 (576)
T PRK14965 78 PCVEITEGRSVDVFE-IDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEP---------- 146 (576)
T ss_pred HHHHHhcCCCCCeee-eeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcC----------
Confidence 0000000000 0000 11221 24444 5666666555 689999999999999999999999972
Q ss_pred ecCCeEEEEecCCC
Q 003038 770 SLGDAIVILSCESF 783 (854)
Q Consensus 770 ~~~~aIiIlTsn~f 783 (854)
-.+++|||+|+..
T Consensus 147 -p~~~~fIl~t~~~ 159 (576)
T PRK14965 147 -PPHVKFIFATTEP 159 (576)
T ss_pred -CCCeEEEEEeCCh
Confidence 3578899988643
No 56
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.4e-10 Score=133.59 Aligned_cols=127 Identities=9% Similarity=0.117 Sum_probs=102.1
Q ss_pred cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEe
Q 003038 225 KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNL 304 (854)
Q Consensus 225 ~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfi 304 (854)
|-+.+++|+||||||||-+|.++|.. .+.+|+++-...|.+.|.|..|+.+++||..+++. +|||||+
T Consensus 699 r~~~giLLyGppGcGKT~la~a~a~~----------~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a--~PCiLFF 766 (952)
T KOG0735|consen 699 RLRTGILLYGPPGCGKTLLASAIASN----------SNLRFISVKGPELLSKYIGASEQNVRDLFERAQSA--KPCILFF 766 (952)
T ss_pred ccccceEEECCCCCcHHHHHHHHHhh----------CCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhcc--CCeEEEe
Confidence 35678999999999999999999976 58899999999999999999999999999999986 8999999
Q ss_pred Cccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchhhhhcc
Q 003038 305 GDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLETLWSL 374 (854)
Q Consensus 305 del~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~ 374 (854)
||++.+ ..++..+.| +.++.|..+-.=|.++-|=+.+.++|||+..+. .||||-|--||
T Consensus 767 DEfdSiAPkRGhDsTG------VTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdl-----iDpALLRpGRl 826 (952)
T KOG0735|consen 767 DEFDSIAPKRGHDSTG------VTDRVVNQLLTELDGAEGLDGVYILAATSRPDL-----IDPALLRPGRL 826 (952)
T ss_pred ccccccCcccCCCCCC------chHHHHHHHHHhhccccccceEEEEEecCCccc-----cCHhhcCCCcc
Confidence 999999 655444333 455777665554532222235999999997773 69999885555
No 57
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.5e-10 Score=121.73 Aligned_cols=129 Identities=12% Similarity=0.120 Sum_probs=96.3
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeCc
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLGD 306 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfide 306 (854)
-+.++|+||||+||+-+++++|.. .|-.|++++.+.|++.+.||.|+-++.||+.++++ +|.|+||||
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVATE----------AnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~--kPSIIFiDE 233 (439)
T KOG0739|consen 166 WRGILLYGPPGTGKSYLAKAVATE----------ANSTFFSVSSSDLVSKWMGESEKLVKNLFEMAREN--KPSIIFIDE 233 (439)
T ss_pred ceeEEEeCCCCCcHHHHHHHHHhh----------cCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhc--CCcEEEeeh
Confidence 357899999999999999999976 56799999999999999999999999999999997 899999999
Q ss_pred cccc-cccccccccccccchhhhHHHHHHHhhc-cc-CCC--CceEEEEEecCHHHHHHhhccCCchhhhhcc-CCCCCC
Q 003038 307 LEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLV-CG-IGE--NARFWLMGIATFQSYMRCKSGHPSLETLWSL-HPLTIP 380 (854)
Q Consensus 307 l~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll-~~-~~g--~g~l~lIgatT~~ey~k~~~~~pale~~~~~-~~v~i~ 380 (854)
|+.+ +.+..+. ..+.++.-.+ +| .. .-| ++.+-++|||+... ..|.|+.| || ..|.||
T Consensus 234 iDslcg~r~enE------seasRRIKTE---fLVQMqGVG~d~~gvLVLgATNiPw-----~LDsAIRR--RFekRIYIP 297 (439)
T KOG0739|consen 234 IDSLCGSRSENE------SEASRRIKTE---FLVQMQGVGNDNDGVLVLGATNIPW-----VLDSAIRR--RFEKRIYIP 297 (439)
T ss_pred hhhhccCCCCCc------hHHHHHHHHH---HHHhhhccccCCCceEEEecCCCch-----hHHHHHHH--Hhhcceecc
Confidence 9999 7765321 1111222222 22 11 122 24699999998654 35778888 66 445555
Q ss_pred Cch
Q 003038 381 AGS 383 (854)
Q Consensus 381 ~~s 383 (854)
=|.
T Consensus 298 LPe 300 (439)
T KOG0739|consen 298 LPE 300 (439)
T ss_pred CCc
Confidence 443
No 58
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.12 E-value=1.7e-10 Score=120.68 Aligned_cols=137 Identities=19% Similarity=0.259 Sum_probs=101.9
Q ss_pred ceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCcccccccccc----CCCCCCchHH--HHHHHHH-
Q 003038 657 ETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRS----RDEQSCSYIE--RFAEAVS- 729 (854)
Q Consensus 657 ~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl----~~~~g~g~~e--~L~eav~- 729 (854)
..+++|+||+|.||.+.+.+|-+.+||..-.=++|+...|.+++.-..|-..++.. +.|..+|+.+ .+.+.++
T Consensus 34 ~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKe 113 (351)
T KOG2035|consen 34 FPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKE 113 (351)
T ss_pred CCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHH
Confidence 45899999999999999999999999977777888888777432211111111111 1233345444 1222222
Q ss_pred -----------cCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeecCCeEEEEecCCCCCCCCCCCCCccCCC
Q 003038 730 -----------NNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDAIVILSCESFSSRSRACSPPTKQKS 798 (854)
Q Consensus 730 -----------~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn~f~~~s~~~sp~~~~~~ 798 (854)
+.++.||+|.|+|++..+.|.+|.+.|| ..-+|+.+||.|| |.|+...|.
T Consensus 114 vAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTME-----------kYs~~~RlIl~cn---s~SriIepI----- 174 (351)
T KOG2035|consen 114 VAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTME-----------KYSSNCRLILVCN---STSRIIEPI----- 174 (351)
T ss_pred HHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHH-----------HHhcCceEEEEec---CcccchhHH-----
Confidence 3679999999999999999999999999 4557888999995 678888999
Q ss_pred CCchhhcccccCCCCCceeeeccCCCC
Q 003038 799 DGCEEEKGAAMEGTSPSVSLDLNICID 825 (854)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~l~~~~~ 825 (854)
+||||-++++++.+
T Consensus 175 -------------rSRCl~iRvpaps~ 188 (351)
T KOG2035|consen 175 -------------RSRCLFIRVPAPSD 188 (351)
T ss_pred -------------hhheeEEeCCCCCH
Confidence 99999999999844
No 59
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.12 E-value=1.8e-10 Score=126.50 Aligned_cols=101 Identities=13% Similarity=0.238 Sum_probs=73.3
Q ss_pred cccccHHHHHH---HHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccc
Q 003038 619 KVPWQKDTVYD---IANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSS 695 (854)
Q Consensus 619 ~V~GQ~~av~~---Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~ 695 (854)
.|+||++.+.. |-.+|.. +..++++|+||||||||++|+.||... ...|..++...
T Consensus 25 e~vGQ~HLlg~~~~lrr~v~~------------------~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~~~sAv~ 83 (436)
T COG2256 25 EVVGQEHLLGEGKPLRRAVEA------------------GHLHSMILWGPPGTGKTTLARLIAGTT---NAAFEALSAVT 83 (436)
T ss_pred HhcChHhhhCCCchHHHHHhc------------------CCCceeEEECCCCCCHHHHHHHHHHhh---CCceEEecccc
Confidence 47999988843 2233322 346799999999999999999999976 45677776431
Q ss_pred ccCcCCCccccccccccCCCCCCchHH--HHHHHHHc----CCCEEEEEecCCCCCHHHHHHHHHhhhcCeEe
Q 003038 696 FSSTRADSTEDSRNKRSRDEQSCSYIE--RFAEAVSN----NPHRVFLIEDVEQADYCSQKGFKRAIESGRIV 762 (854)
Q Consensus 696 ~~~~~~~s~e~~~~~rl~~~~g~g~~e--~L~eav~~----~p~~ViliDEieka~~~v~~~Ll~~le~G~l~ 762 (854)
. |..+ .+.+.-++ ....|+|+||||+.+..-|+.||..||+|.++
T Consensus 84 ~----------------------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~ii 134 (436)
T COG2256 84 S----------------------GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTII 134 (436)
T ss_pred c----------------------cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEE
Confidence 1 2222 22222221 23579999999999999999999999999887
No 60
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.12 E-value=3.3e-10 Score=126.93 Aligned_cols=80 Identities=19% Similarity=0.254 Sum_probs=62.9
Q ss_pred HHHHHhhcCcccccHHHHHHHHHHHHHh--hcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCc
Q 003038 610 TSLCNALEKKVPWQKDTVYDIANTVLKC--RSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNN 687 (854)
Q Consensus 610 ~~L~~~L~~~V~GQ~~av~~Ia~~v~~~--rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~ 687 (854)
+.+.+.|.+.|+||++|+..++-++... |.++....+. .-+...+||+||+|+|||++|++||+.+ ..+
T Consensus 4 ~~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~------e~~p~~ILLiGppG~GKT~lAraLA~~l---~~~ 74 (441)
T TIGR00390 4 REIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLNEELKD------EVTPKNILMIGPTGVGKTEIARRLAKLA---NAP 74 (441)
T ss_pred HHHHHHHhhhccCHHHHHHHHHHHHHhhhhhhcccccccc------ccCCceEEEECCCCCCHHHHHHHHHHHh---CCe
Confidence 4788899999999999999999999864 3333221110 1123579999999999999999999998 578
Q ss_pred eEEEccccccC
Q 003038 688 FVSIALSSFSS 698 (854)
Q Consensus 688 ~i~id~s~~~~ 698 (854)
|+.+|++.|.+
T Consensus 75 fi~vdat~~~e 85 (441)
T TIGR00390 75 FIKVEATKFTE 85 (441)
T ss_pred EEEeecceeec
Confidence 99999987763
No 61
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.11 E-value=2.6e-10 Score=125.21 Aligned_cols=129 Identities=12% Similarity=0.022 Sum_probs=93.6
Q ss_pred cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhh---CCCeE
Q 003038 225 KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCL---GRGIV 301 (854)
Q Consensus 225 ~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~---~~~~I 301 (854)
+-.+-++|+||||||||.+++++|..+ |+.++.++.+.|.++|.||.|+++++++.+++... ++|+|
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el----------g~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcV 215 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM----------GIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSC 215 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc----------CCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeE
Confidence 455667899999999999999999884 77899999999999999999999999999998531 57999
Q ss_pred EEeCccccc-cccccccccccccchhhhHHH-HHHHhhc-ccC-----------CCCceEEEEEecCHHHHHHhhccCCc
Q 003038 302 LNLGDLEWA-EFRASSSEQVRGYYCSIEHII-MEIGKLV-CGI-----------GENARFWLMGIATFQSYMRCKSGHPS 367 (854)
Q Consensus 302 Lfidel~~l-~~~~~~~~~~~~~~~~~~~~~-~~~~~ll-~~~-----------~g~g~l~lIgatT~~ey~k~~~~~pa 367 (854)
||||||+.+ +...+.. +....+.+ ..+.+++ .+. ....++.+|+||+--. ..||+
T Consensus 216 LFIDEIDA~~g~r~~~~------~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd-----~LDpA 284 (413)
T PLN00020 216 LFINDLDAGAGRFGTTQ------YTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFS-----TLYAP 284 (413)
T ss_pred EEEehhhhcCCCCCCCC------cchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcc-----cCCHh
Confidence 999999999 6543211 11112333 3444544 210 1123688999996433 46888
Q ss_pred hhhhhcc
Q 003038 368 LETLWSL 374 (854)
Q Consensus 368 le~~~~~ 374 (854)
|-|-=||
T Consensus 285 LlRpGRf 291 (413)
T PLN00020 285 LIRDGRM 291 (413)
T ss_pred HcCCCCC
Confidence 8774334
No 62
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.10 E-value=5.1e-10 Score=122.00 Aligned_cols=139 Identities=16% Similarity=0.188 Sum_probs=95.4
Q ss_pred hHHHHHHHHHhhcCcccccHHHHHHHHHHHHH-------hhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHH
Q 003038 605 NSENLTSLCNALEKKVPWQKDTVYDIANTVLK-------CRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKEL 677 (854)
Q Consensus 605 ~~e~l~~L~~~L~~~V~GQ~~av~~Ia~~v~~-------~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~L 677 (854)
+...++.+.+.|...++|.+++.+.|.+.+.. .+.|+... .|...++|+||+|||||++|+++
T Consensus 9 ~~~~~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~----------~~~~~vll~G~pGTGKT~lA~~i 78 (284)
T TIGR02880 9 EASGITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQRLGLASA----------APTLHMSFTGNPGTGKTTVALRM 78 (284)
T ss_pred hhccHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcC----------CCCceEEEEcCCCCCHHHHHHHH
Confidence 34456778888888899999998887665432 23444321 34457999999999999999999
Q ss_pred HHHHhCC----CCceEEEccccccCcCCCccccccccccCCCCCCchH-HHHHHHHHcCCCEEEEEecCCCC--------
Q 003038 678 ARLVFGS----HNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYI-ERFAEAVSNNPHRVFLIEDVEQA-------- 744 (854)
Q Consensus 678 A~~lfg~----~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~-e~L~eav~~~p~~ViliDEieka-------- 744 (854)
|+.+... ...|+.+++++.. . .+. |.. ..+.+.+.+...+|+|||||+.+
T Consensus 79 a~~l~~~g~~~~~~~v~v~~~~l~-------~-----~~~-----g~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~ 141 (284)
T TIGR02880 79 AQILHRLGYVRKGHLVSVTRDDLV-------G-----QYI-----GHTAPKTKEILKRAMGGVLFIDEAYYLYRPDNERD 141 (284)
T ss_pred HHHHHHcCCcccceEEEecHHHHh-------H-----hhc-----ccchHHHHHHHHHccCcEEEEechhhhccCCCccc
Confidence 9988642 2357777654332 1 111 211 13445555555689999999976
Q ss_pred -CHHHHHHHHHhhhcCeEecCCCceeecCCeEEEEecC
Q 003038 745 -DYCSQKGFKRAIESGRIVTSSGDEVSLGDAIVILSCE 781 (854)
Q Consensus 745 -~~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn 781 (854)
..++++.|++.|++++ .+.+||++++
T Consensus 142 ~~~~~~~~Ll~~le~~~-----------~~~~vI~a~~ 168 (284)
T TIGR02880 142 YGQEAIEILLQVMENQR-----------DDLVVILAGY 168 (284)
T ss_pred hHHHHHHHHHHHHhcCC-----------CCEEEEEeCC
Confidence 4678999999998643 5677888764
No 63
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.10 E-value=4.9e-10 Score=127.40 Aligned_cols=155 Identities=12% Similarity=0.099 Sum_probs=106.6
Q ss_pred cHHHHHHHHHHhh----c---------cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccc
Q 003038 211 RNEDVMYVIENLM----S---------KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMN 277 (854)
Q Consensus 211 r~~ei~~v~~~L~----r---------~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~ 277 (854)
+++.++.+.+.+. + ...++++|+||||||||.+|+++|... +..++.++.+.+...|
T Consensus 136 l~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~----------~~~~i~v~~~~l~~~~ 205 (389)
T PRK03992 136 LEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET----------NATFIRVVGSELVQKF 205 (389)
T ss_pred cHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh----------CCCEEEeehHHHhHhh
Confidence 5666666655432 1 346789999999999999999999874 4578999999888889
Q ss_pred hHHHHHHHHHHHHHHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcc---cCCCCceEEEEEec
Q 003038 278 RVEVEQRVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVC---GIGENARFWLMGIA 353 (854)
Q Consensus 278 rge~E~rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~---~~~g~g~l~lIgat 353 (854)
.|+.+..++.+++.++.. .|+||||||++.+ +.+...... ....+.. .+..++. .....+.+++||||
T Consensus 206 ~g~~~~~i~~~f~~a~~~--~p~IlfiDEiD~l~~~r~~~~~~---~~~~~~~---~l~~lL~~ld~~~~~~~v~VI~aT 277 (389)
T PRK03992 206 IGEGARLVRELFELAREK--APSIIFIDEIDAIAAKRTDSGTS---GDREVQR---TLMQLLAEMDGFDPRGNVKIIAAT 277 (389)
T ss_pred ccchHHHHHHHHHHHHhc--CCeEEEEechhhhhcccccCCCC---ccHHHHH---HHHHHHHhccccCCCCCEEEEEec
Confidence 999999999999999875 6899999999999 554321100 0001112 2334442 11122369999999
Q ss_pred CHHHHHHhhccCCchhhhhcc-CCCCCCCchHHHHh
Q 003038 354 TFQSYMRCKSGHPSLETLWSL-HPLTIPAGSLSLSL 388 (854)
Q Consensus 354 T~~ey~k~~~~~pale~~~~~-~~v~i~~~sl~~al 388 (854)
+..+ ..||+|-|-=|| +.|.|+.|+.....
T Consensus 278 n~~~-----~ld~allRpgRfd~~I~v~~P~~~~R~ 308 (389)
T PRK03992 278 NRID-----ILDPAILRPGRFDRIIEVPLPDEEGRL 308 (389)
T ss_pred CChh-----hCCHHHcCCccCceEEEECCCCHHHHH
Confidence 8764 468888762234 34777777765533
No 64
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.09 E-value=3.8e-10 Score=132.39 Aligned_cols=154 Identities=14% Similarity=0.133 Sum_probs=104.4
Q ss_pred HHHHHHHHHhhc---------cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHH
Q 003038 213 EDVMYVIENLMS---------KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQ 283 (854)
Q Consensus 213 ~ei~~v~~~L~r---------~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~ 283 (854)
++++.+++.|.. +..++++|+||||||||.+++++|.. .++.++.++.+.+...+.|+.+.
T Consensus 65 ~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~----------~~~~~~~i~~~~~~~~~~g~~~~ 134 (495)
T TIGR01241 65 EELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE----------AGVPFFSISGSDFVEMFVGVGAS 134 (495)
T ss_pred HHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH----------cCCCeeeccHHHHHHHHhcccHH
Confidence 345666665432 24568999999999999999999976 36789999999888889999999
Q ss_pred HHHHHHHHHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhh
Q 003038 284 RVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCK 362 (854)
Q Consensus 284 rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~ 362 (854)
+++++++.++.. .|+|||||||+.+ ..+..+..+ .....++.+..+-..+....+++.+.+||||+..+
T Consensus 135 ~l~~~f~~a~~~--~p~Il~iDEid~l~~~r~~~~~~---~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~----- 204 (495)
T TIGR01241 135 RVRDLFEQAKKN--APCIIFIDEIDAVGRQRGAGLGG---GNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPD----- 204 (495)
T ss_pred HHHHHHHHHHhc--CCCEEEEechhhhhhccccCcCC---ccHHHHHHHHHHHhhhccccCCCCeEEEEecCChh-----
Confidence 999999999875 6899999999999 543321000 00111123223222232112233599999998765
Q ss_pred ccCCchhhhhcc-CCCCCCCchHHH
Q 003038 363 SGHPSLETLWSL-HPLTIPAGSLSL 386 (854)
Q Consensus 363 ~~~pale~~~~~-~~v~i~~~sl~~ 386 (854)
..||+|.|.=|| +.|.|+.|+...
T Consensus 205 ~ld~al~r~gRfd~~i~i~~Pd~~~ 229 (495)
T TIGR01241 205 VLDPALLRPGRFDRQVVVDLPDIKG 229 (495)
T ss_pred hcCHHHhcCCcceEEEEcCCCCHHH
Confidence 468999873334 346666666543
No 65
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.09 E-value=2.4e-10 Score=132.56 Aligned_cols=134 Identities=10% Similarity=0.093 Sum_probs=95.3
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeC
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLG 305 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfid 305 (854)
..+.++|+||||||||.+|+++|... +..++.++.+.+.++|.|+.|.+++++++.++.. .|+|||||
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~----------~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~--~P~IL~ID 325 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDW----------QLPLLRLDVGKLFGGIVGESESRMRQMIRIAEAL--SPCILWID 325 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEEhHHhcccccChHHHHHHHHHHHHHhc--CCcEEEeh
Confidence 45779999999999999999999873 6789999999999999999999999999999876 79999999
Q ss_pred ccccc-cccc-cccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchhhhhccC-CCCCCCc
Q 003038 306 DLEWA-EFRA-SSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLETLWSLH-PLTIPAG 382 (854)
Q Consensus 306 el~~l-~~~~-~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~~-~v~i~~~ 382 (854)
||+.+ .... .+..+ ...+....+-..+.. .+..+.+||||+.-+ .-||+|-|--||. .+.|+-|
T Consensus 326 EID~~~~~~~~~~d~~------~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~-----~Ld~allR~GRFD~~i~v~lP 392 (489)
T CHL00195 326 EIDKAFSNSESKGDSG------TTNRVLATFITWLSE--KKSPVFVVATANNID-----LLPLEILRKGRFDEIFFLDLP 392 (489)
T ss_pred hhhhhhccccCCCCch------HHHHHHHHHHHHHhc--CCCceEEEEecCChh-----hCCHHHhCCCcCCeEEEeCCc
Confidence 99988 4322 11111 111222222223321 122599999998654 4688887643552 3445544
Q ss_pred hH
Q 003038 383 SL 384 (854)
Q Consensus 383 sl 384 (854)
+.
T Consensus 393 ~~ 394 (489)
T CHL00195 393 SL 394 (489)
T ss_pred CH
Confidence 43
No 66
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.09 E-value=5.2e-10 Score=136.75 Aligned_cols=157 Identities=11% Similarity=0.175 Sum_probs=108.3
Q ss_pred hHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCC
Q 003038 605 NSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGS 684 (854)
Q Consensus 605 ~~e~l~~L~~~L~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~ 684 (854)
+..+++.-++.|.+..+|++.+.+.|...+..... ... .+...++|+||+|+|||++++.+|+.+ +
T Consensus 309 ~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~-~~~-----------~~g~~i~l~GppG~GKTtl~~~ia~~l-~- 374 (784)
T PRK10787 309 VKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSR-VNK-----------IKGPILCLVGPPGVGKTSLGQSIAKAT-G- 374 (784)
T ss_pred ccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHh-ccc-----------CCCceEEEECCCCCCHHHHHHHHHHHh-C-
Confidence 34578888999999999999999999877663321 111 112268999999999999999999987 3
Q ss_pred CCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHc--CCCEEEEEecCCCCCHHH----HHHHHHhhhc
Q 003038 685 HNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSN--NPHRVFLIEDVEQADYCS----QKGFKRAIES 758 (854)
Q Consensus 685 ~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~--~p~~ViliDEieka~~~v----~~~Ll~~le~ 758 (854)
.+|++++++...+..... .|. +...+...| .+..++.+ ....|||||||||++++. ++.|++++|.
T Consensus 375 -~~~~~i~~~~~~d~~~i~--g~~--~~~~g~~~G---~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~ 446 (784)
T PRK10787 375 -RKYVRMALGGVRDEAEIR--GHR--RTYIGSMPG---KLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDP 446 (784)
T ss_pred -CCEEEEEcCCCCCHHHhc--cch--hccCCCCCc---HHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhcc
Confidence 568888877554110000 010 111111112 23444433 234599999999999876 5999999997
Q ss_pred C---eEecCC-CceeecCCeEEEEecCCC
Q 003038 759 G---RIVTSS-GDEVSLGDAIVILSCESF 783 (854)
Q Consensus 759 G---~l~d~~-G~~v~~~~aIiIlTsn~f 783 (854)
+ .++|.. .-.+|+++++||+|+|++
T Consensus 447 ~~~~~~~d~~~~~~~dls~v~~i~TaN~~ 475 (784)
T PRK10787 447 EQNVAFSDHYLEVDYDLSDVMFVATSNSM 475 (784)
T ss_pred ccEEEEecccccccccCCceEEEEcCCCC
Confidence 5 677754 346799999999999986
No 67
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.09 E-value=5.2e-10 Score=132.45 Aligned_cols=135 Identities=18% Similarity=0.168 Sum_probs=87.5
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..|+||++++..+.+++... +....+||+||+|+|||++|+.||+.+++.... -.-.|..+.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~-----------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~-~~~pC~~C~ 77 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQG-----------------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPP-DGEPCNECE 77 (559)
T ss_pred HhccCcHHHHHHHHHHHHcC-----------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC-CCCCCCccH
Confidence 46899999999999888763 234579999999999999999999999743210 000111111
Q ss_pred CcCCCccccc-cccccCCCCC-CchHH--HHHHHHHcCC----CEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCcee
Q 003038 698 STRADSTEDS-RNKRSRDEQS-CSYIE--RFAEAVSNNP----HRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEV 769 (854)
Q Consensus 698 ~~~~~s~e~~-~~~rl~~~~g-~g~~e--~L~eav~~~p----~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v 769 (854)
.+.......| .+- .+++.. .|..+ .+.+.+...| |+||+|||+|+++...+|.|++.+|+.
T Consensus 78 ~C~~i~~g~~~dv~-eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEep---------- 146 (559)
T PRK05563 78 ICKAITNGSLMDVI-EIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEP---------- 146 (559)
T ss_pred HHHHHhcCCCCCeE-EeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCC----------
Confidence 0000000000 000 011111 24443 5666666544 789999999999999999999999963
Q ss_pred ecCCeEEEEecCC
Q 003038 770 SLGDAIVILSCES 782 (854)
Q Consensus 770 ~~~~aIiIlTsn~ 782 (854)
-.+++|||+|+.
T Consensus 147 -p~~~ifIlatt~ 158 (559)
T PRK05563 147 -PAHVIFILATTE 158 (559)
T ss_pred -CCCeEEEEEeCC
Confidence 246789987753
No 68
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.07 E-value=4.6e-10 Score=132.85 Aligned_cols=136 Identities=13% Similarity=0.089 Sum_probs=84.4
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..|+||++++..|.+++... +....+||+||+|+|||++|++||+.|++... ....-|..+.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~-----------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~-~~~~pCg~C~ 77 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEG-----------------RLHHAYLLTGTRGVGKTTIARILAKSLNCENA-QHGEPCGVCQ 77 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcC-----------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCC-CCCCCCcccH
Confidence 45799999999999988753 23457899999999999999999999975321 1101111111
Q ss_pred CcCCCccccc-cccccCCCCCCchHH--HHHHHHHc----CCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceee
Q 003038 698 STRADSTEDS-RNKRSRDEQSCSYIE--RFAEAVSN----NPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVS 770 (854)
Q Consensus 698 ~~~~~s~e~~-~~~rl~~~~g~g~~e--~L~eav~~----~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~ 770 (854)
.+.......| .+..+-.....|..+ .+.+.+.. ..++||||||+|+++...++.|++.||+-
T Consensus 78 sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEP----------- 146 (709)
T PRK08691 78 SCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEP----------- 146 (709)
T ss_pred HHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhC-----------
Confidence 0000000001 000000011113322 34444433 34689999999999999999999999961
Q ss_pred cCCeEEEEecCC
Q 003038 771 LGDAIVILSCES 782 (854)
Q Consensus 771 ~~~aIiIlTsn~ 782 (854)
-.+++|||+|+.
T Consensus 147 p~~v~fILaTtd 158 (709)
T PRK08691 147 PEHVKFILATTD 158 (709)
T ss_pred CCCcEEEEEeCC
Confidence 245778998864
No 69
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=4.7e-10 Score=131.70 Aligned_cols=153 Identities=12% Similarity=0.111 Sum_probs=109.1
Q ss_pred HHHHHHHHHHhhcc----------CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHH
Q 003038 212 NEDVMYVIENLMSK----------RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEV 281 (854)
Q Consensus 212 ~~ei~~v~~~L~r~----------~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~ 281 (854)
.+.++..++.+..+ ....++|+||||+|||.+++++|.. .+.+|++++.+.+.++|.||.
T Consensus 251 k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~----------~~~~fi~v~~~~l~sk~vGes 320 (494)
T COG0464 251 KEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALE----------SRSRFISVKGSELLSKWVGES 320 (494)
T ss_pred HHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhh----------CCCeEEEeeCHHHhccccchH
Confidence 34455555554433 3336899999999999999999974 467999999999999999999
Q ss_pred HHHHHHHHHHHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhccc-CCCCceEEEEEecCHHHHH
Q 003038 282 EQRVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG-IGENARFWLMGIATFQSYM 359 (854)
Q Consensus 282 E~rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~g~g~l~lIgatT~~ey~ 359 (854)
|++++++|..+++. .|+||||||++.+ ..+.....+ ..++.+..+...+.. ... ..+.+||||+....
T Consensus 321 ek~ir~~F~~A~~~--~p~iiFiDEiDs~~~~r~~~~~~------~~~r~~~~lL~~~d~~e~~-~~v~vi~aTN~p~~- 390 (494)
T COG0464 321 EKNIRELFEKARKL--APSIIFIDEIDSLASGRGPSEDG------SGRRVVGQLLTELDGIEKA-EGVLVIAATNRPDD- 390 (494)
T ss_pred HHHHHHHHHHHHcC--CCcEEEEEchhhhhccCCCCCch------HHHHHHHHHHHHhcCCCcc-CceEEEecCCCccc-
Confidence 99999999999976 7999999999999 544322111 112455555555532 222 25999999998773
Q ss_pred HhhccCCchhhhhcc-CCCCCCCchHHHHh
Q 003038 360 RCKSGHPSLETLWSL-HPLTIPAGSLSLSL 388 (854)
Q Consensus 360 k~~~~~pale~~~~~-~~v~i~~~sl~~al 388 (854)
.||++-|--|| -.+.|+.|+....+
T Consensus 391 ----ld~a~lR~gRfd~~i~v~~pd~~~r~ 416 (494)
T COG0464 391 ----LDPALLRPGRFDRLIYVPLPDLEERL 416 (494)
T ss_pred ----cCHhhcccCccceEeecCCCCHHHHH
Confidence 58888774344 34556666665544
No 70
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.06 E-value=7.5e-10 Score=130.50 Aligned_cols=135 Identities=14% Similarity=0.145 Sum_probs=85.6
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
+.|+||++++..|.+++...|. ...+||+||+|+|||++|+.||+.++..... ....|..+.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri-----------------~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~-~~~pCg~C~ 77 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRV-----------------APAYLFSGTRGVGKTTIARIFAKALNCETAP-TGEPCNTCE 77 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCC-----------------CceEEEECCCCCCHHHHHHHHHHhccccCCC-CCCCCcccH
Confidence 4578999999999988875322 3589999999999999999999999753110 000111111
Q ss_pred CcCCCcccccc-ccccCCCC-CCchHH--HHHHHHHc----CCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCcee
Q 003038 698 STRADSTEDSR-NKRSRDEQ-SCSYIE--RFAEAVSN----NPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEV 769 (854)
Q Consensus 698 ~~~~~s~e~~~-~~rl~~~~-g~g~~e--~L~eav~~----~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v 769 (854)
.+.......|. +.. +.+. ..+..+ .|.+.+.. ..++||||||+|+++...++.|+++||+-
T Consensus 78 sC~~i~~g~hpDv~e-Id~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP---------- 146 (624)
T PRK14959 78 QCRKVTQGMHVDVVE-IDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEP---------- 146 (624)
T ss_pred HHHHHhcCCCCceEE-EecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhcc----------
Confidence 00000001110 100 1111 113333 45555554 45789999999999999999999999962
Q ss_pred ecCCeEEEEecCC
Q 003038 770 SLGDAIVILSCES 782 (854)
Q Consensus 770 ~~~~aIiIlTsn~ 782 (854)
-.+++|||+|+.
T Consensus 147 -~~~~ifILaTt~ 158 (624)
T PRK14959 147 -PARVTFVLATTE 158 (624)
T ss_pred -CCCEEEEEecCC
Confidence 246788998864
No 71
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.06 E-value=7.1e-10 Score=131.59 Aligned_cols=139 Identities=17% Similarity=0.156 Sum_probs=89.4
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCce---EEEcc-
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNF---VSIAL- 693 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~---i~id~- 693 (854)
..|+||+.++..|.+++... |....+||+||+|+|||++|+.||+.|+.....- -.+++
T Consensus 24 ~dliGq~~~v~~L~~~~~~g-----------------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c 86 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETG-----------------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC 86 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----------------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC
Confidence 46899999999999988753 2345899999999999999999999997532110 00111
Q ss_pred ccccCcCCCccccccccccCCCCCC-chHH--HHHHHHHcCC----CEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCC
Q 003038 694 SSFSSTRADSTEDSRNKRSRDEQSC-SYIE--RFAEAVSNNP----HRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSG 766 (854)
Q Consensus 694 s~~~~~~~~s~e~~~~~rl~~~~g~-g~~e--~L~eav~~~p----~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G 766 (854)
..+..+.......|.--..+.+... |..+ .+.+.++..| ++||+|||+|+++...+|.|+++||+
T Consensus 87 g~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEe-------- 158 (598)
T PRK09111 87 GVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEE-------- 158 (598)
T ss_pred cccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHh--------
Confidence 1110000000011110000112222 5544 5666666555 78999999999999999999999996
Q ss_pred ceeecCCeEEEEecCCCC
Q 003038 767 DEVSLGDAIVILSCESFS 784 (854)
Q Consensus 767 ~~v~~~~aIiIlTsn~f~ 784 (854)
.-.+++|||+|+..+
T Consensus 159 ---Pp~~~~fIl~tte~~ 173 (598)
T PRK09111 159 ---PPPHVKFIFATTEIR 173 (598)
T ss_pred ---CCCCeEEEEEeCChh
Confidence 224677899886543
No 72
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.06 E-value=5.3e-10 Score=115.91 Aligned_cols=140 Identities=14% Similarity=0.156 Sum_probs=102.8
Q ss_pred CCCCCCC-cHHHHHHHHHHhhcc----------CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccccc
Q 003038 204 RVSLDPI-RNEDVMYVIENLMSK----------RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISS 272 (854)
Q Consensus 204 ~g~ldpv-r~~ei~~v~~~L~r~----------~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~ 272 (854)
+-.+|-| ..||.++--.++++- -.+|++++||||+|||.++++||.. .++.++.+....
T Consensus 117 ~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane----------~kvp~l~vkat~ 186 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANE----------AKVPLLLVKATE 186 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcc----------cCCceEEechHH
Confidence 3456666 777776655554432 5679999999999999999999965 456799999999
Q ss_pred ccccchHHHHHHHHHHHHHHHhhhCCCeEEEeCccccc--cccccccccccccchhhhHHHHHHHh-hcc-cC--CCCce
Q 003038 273 FRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLGDLEWA--EFRASSSEQVRGYYCSIEHIIMEIGK-LVC-GI--GENAR 346 (854)
Q Consensus 273 l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfidel~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~-ll~-~~--~g~g~ 346 (854)
|+.-+.|+-.+|+.++.+.+++. .|||+||||++.+ +.+-.. ...-|.++-| ||- .. ..+..
T Consensus 187 liGehVGdgar~Ihely~rA~~~--aPcivFiDE~DAiaLdRryQe----------lRGDVsEiVNALLTelDgi~eneG 254 (368)
T COG1223 187 LIGEHVGDGARRIHELYERARKA--APCIVFIDELDAIALDRRYQE----------LRGDVSEIVNALLTELDGIKENEG 254 (368)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhc--CCeEEEehhhhhhhhhhhHHH----------hcccHHHHHHHHHHhccCcccCCc
Confidence 99999999999999999999986 7999999999999 433110 1112333333 331 11 11225
Q ss_pred EEEEEecCHHHHHHhhccCCchhh
Q 003038 347 FWLMGIATFQSYMRCKSGHPSLET 370 (854)
Q Consensus 347 l~lIgatT~~ey~k~~~~~pale~ 370 (854)
+..|+||+--+. .|||+.+
T Consensus 255 VvtIaaTN~p~~-----LD~aiRs 273 (368)
T COG1223 255 VVTIAATNRPEL-----LDPAIRS 273 (368)
T ss_pred eEEEeecCChhh-----cCHHHHh
Confidence 999999997773 5888888
No 73
>CHL00181 cbbX CbbX; Provisional
Probab=99.05 E-value=5.1e-10 Score=122.03 Aligned_cols=139 Identities=11% Similarity=0.086 Sum_probs=96.8
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHHHc-CCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeC
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKIEK-GDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLG 305 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i~~-~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfid 305 (854)
..|++|+||||||||++|+.+|..... |- +.+.+++.++...|.+.|.|+.+.+..++++.+. +-|||||
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~----~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~-----ggVLfID 129 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGY----IKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAM-----GGVLFID 129 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCC----CCCCceEEecHHHHHHHHhccchHHHHHHHHHcc-----CCEEEEE
Confidence 446899999999999999999987543 32 3344689999888888899998888877777643 3499999
Q ss_pred ccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchhhhhccC-CCCCCCch
Q 003038 306 DLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLETLWSLH-PLTIPAGS 383 (854)
Q Consensus 306 el~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~~-~v~i~~~s 383 (854)
|+|.+ ..+...+ +. ......+-.++.. .++.+.+|+|++.+.-.+++..+|+|.+ ||. .|.+++.+
T Consensus 130 E~~~l~~~~~~~~------~~--~e~~~~L~~~me~--~~~~~~vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t 197 (287)
T CHL00181 130 EAYYLYKPDNERD------YG--SEAIEILLQVMEN--QRDDLVVIFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYT 197 (287)
T ss_pred ccchhccCCCccc------hH--HHHHHHHHHHHhc--CCCCEEEEEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcC
Confidence 99999 5322110 00 0122233333322 2236999999987776677788999999 774 56777666
Q ss_pred HHH
Q 003038 384 LSL 386 (854)
Q Consensus 384 l~~ 386 (854)
...
T Consensus 198 ~~e 200 (287)
T CHL00181 198 PEE 200 (287)
T ss_pred HHH
Confidence 443
No 74
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.05 E-value=1.2e-09 Score=128.47 Aligned_cols=134 Identities=14% Similarity=0.158 Sum_probs=85.3
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..|+||++++..+.+++... +....+||+||+|+|||++|+.||+.++.... ...-.|..+.
T Consensus 16 ~divGq~~v~~~L~~~i~~~-----------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~-~~~~pcg~C~ 77 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQ-----------------RLHHAYLFTGTRGVGKTTLARILAKSLNCETG-VTATPCGVCS 77 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----------------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCC-CCCCCCCCCH
Confidence 45799999999999988753 23457899999999999999999999975321 0000111111
Q ss_pred CcCCCccccccccccC--CCCCC-chHH--HHHHHHHcCC----CEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCce
Q 003038 698 STRADSTEDSRNKRSR--DEQSC-SYIE--RFAEAVSNNP----HRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDE 768 (854)
Q Consensus 698 ~~~~~s~e~~~~~rl~--~~~g~-g~~e--~L~eav~~~p----~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~ 768 (854)
.+.......| ..++ .+... +.++ .+.+.+...| ++||+|||+|+++...+|.|++.||+-
T Consensus 78 ~C~~i~~~~~--~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEep--------- 146 (527)
T PRK14969 78 ACLEIDSGRF--VDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEP--------- 146 (527)
T ss_pred HHHHHhcCCC--CceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCC---------
Confidence 0000000001 0111 11111 3433 4555555544 689999999999999999999999972
Q ss_pred eecCCeEEEEecCC
Q 003038 769 VSLGDAIVILSCES 782 (854)
Q Consensus 769 v~~~~aIiIlTsn~ 782 (854)
-.+++|||+|+.
T Consensus 147 --p~~~~fIL~t~d 158 (527)
T PRK14969 147 --PEHVKFILATTD 158 (527)
T ss_pred --CCCEEEEEEeCC
Confidence 246778887754
No 75
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=4.7e-10 Score=119.34 Aligned_cols=156 Identities=13% Similarity=0.203 Sum_probs=103.7
Q ss_pred HHHHHhhcCcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceE
Q 003038 610 TSLCNALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFV 689 (854)
Q Consensus 610 ~~L~~~L~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i 689 (854)
+.+.+.|...||||+.|.+.++=+|..+-.-+....... --.=.-..+|+.||||+|||.||+.||+.| +-+|.
T Consensus 53 ~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~---dvEL~KSNILLiGPTGsGKTlLAqTLAk~L---nVPFa 126 (408)
T COG1219 53 KEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDND---DVELSKSNILLIGPTGSGKTLLAQTLAKIL---NVPFA 126 (408)
T ss_pred HHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCC---ceeeeeccEEEECCCCCcHHHHHHHHHHHh---CCCee
Confidence 588899999999999999999988865532222110000 000011378999999999999999999999 56777
Q ss_pred EEccccccCcCCCccccccccccCCCCCC-chH-H-HHHHHHH-------cCCCEEEEEecCCCCC--------------
Q 003038 690 SIALSSFSSTRADSTEDSRNKRSRDEQSC-SYI-E-RFAEAVS-------NNPHRVFLIEDVEQAD-------------- 745 (854)
Q Consensus 690 ~id~s~~~~~~~~s~e~~~~~rl~~~~g~-g~~-e-~L~eav~-------~~p~~ViliDEieka~-------------- 745 (854)
--|.+..++ .|| |-+ | -|...+. +..+.||+||||||..
T Consensus 127 iADATtLTE-----------------AGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSG 189 (408)
T COG1219 127 IADATTLTE-----------------AGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSG 189 (408)
T ss_pred eccccchhh-----------------ccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCc
Confidence 777665552 244 322 2 2333333 3446799999999974
Q ss_pred HHHHHHHHHhhhcCeEec---CCCc--------eeecCCeEEEEecCCCCCCCCCC
Q 003038 746 YCSQKGFKRAIESGRIVT---SSGD--------EVSLGDAIVILSCESFSSRSRAC 790 (854)
Q Consensus 746 ~~v~~~Ll~~le~G~l~d---~~G~--------~v~~~~aIiIlTsn~f~~~s~~~ 790 (854)
..||.+||++|| |.+.. ..|| .||.+|-.||+ -..|+-.....
T Consensus 190 EGVQQALLKiiE-GTvasVPPqGGRKHP~Qe~iqvDT~NILFIc-gGAF~GlekiI 243 (408)
T COG1219 190 EGVQQALLKIIE-GTVASVPPQGGRKHPQQEFIQVDTSNILFIC-GGAFAGLEKII 243 (408)
T ss_pred hHHHHHHHHHHc-CceeccCCCCCCCCCccceEEEcccceeEEe-ccccccHHHHH
Confidence 359999999997 44432 2344 46777877776 44676655443
No 76
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.04 E-value=1.3e-09 Score=120.30 Aligned_cols=137 Identities=16% Similarity=0.212 Sum_probs=94.2
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCC-------------
Q 003038 619 KVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSH------------- 685 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~------------- 685 (854)
.++|+++++..+...+.... +-...+||+||+|+|||.+|.+||+.+|+..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----------------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~ 65 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----------------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSC 65 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----------------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhh
Confidence 35677777777776666421 1122599999999999999999999999765
Q ss_pred --------CceEEEccccccCcCCCccccccccccCCCCCCc-hHH---HHHHHHHc----CCCEEEEEecCCCCCHHHH
Q 003038 686 --------NNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCS-YIE---RFAEAVSN----NPHRVFLIEDVEQADYCSQ 749 (854)
Q Consensus 686 --------~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g-~~e---~L~eav~~----~p~~ViliDEieka~~~v~ 749 (854)
..++.++.+.-. +.. ..+ .+.+.... .++.||+|||+|+++++.+
T Consensus 66 ~~~~~~~~~d~lel~~s~~~-------------------~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~ 126 (325)
T COG0470 66 KLIPAGNHPDFLELNPSDLR-------------------KIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAA 126 (325)
T ss_pred hHHhhcCCCceEEecccccC-------------------CCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHH
Confidence 233333322111 000 112 23333322 4589999999999999999
Q ss_pred HHHHHhhhcCeEecCCCceeecCCeEEEEecCCCCCCCCCCCCCccCCCCCchhhcccccCCCCCceeeeccC
Q 003038 750 KGFKRAIESGRIVTSSGDEVSLGDAIVILSCESFSSRSRACSPPTKQKSDGCEEEKGAAMEGTSPSVSLDLNI 822 (854)
Q Consensus 750 ~~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn~f~~~s~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 822 (854)
|+|++.+|+ .-.++.|||+|| .+++..+|. .|+|+.+.+..
T Consensus 127 nallk~lEe-----------p~~~~~~il~~n---~~~~il~tI------------------~SRc~~i~f~~ 167 (325)
T COG0470 127 NALLKTLEE-----------PPKNTRFILITN---DPSKILPTI------------------RSRCQRIRFKP 167 (325)
T ss_pred HHHHHHhcc-----------CCCCeEEEEEcC---Chhhccchh------------------hhcceeeecCC
Confidence 999999995 457889999998 344444566 78888887764
No 77
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.04 E-value=1.6e-10 Score=111.92 Aligned_cols=114 Identities=17% Similarity=0.241 Sum_probs=75.2
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccC--CCCCCchHH-HHHHHHHcCCCEE
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSR--DEQSCSYIE-RFAEAVSNNPHRV 735 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~--~~~g~g~~e-~L~eav~~~p~~V 735 (854)
.+++.||+|+|||++|+.||+.+ ..+++.+.++..++ ...+...+ .+....+.+ .+..+++ ...|
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~---~~~~~~i~~~~~~~-------~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~i 68 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL---GRPVIRINCSSDTT-------EEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGI 68 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH---TCEEEEEE-TTTST-------HHHHHCEEET-TTTTCEEE-CCCTTHH--EEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHh---hcceEEEEeccccc-------cccceeeeeeccccccccccccccccc--ceeE
Confidence 37899999999999999999999 56888888886652 11111100 000001111 2333333 4579
Q ss_pred EEEecCCCCCHHHHHHHHHhhhcCeEecCC-CceeecCC-------eEEEEecCCCC
Q 003038 736 FLIEDVEQADYCSQKGFKRAIESGRIVTSS-GDEVSLGD-------AIVILSCESFS 784 (854)
Q Consensus 736 iliDEieka~~~v~~~Ll~~le~G~l~d~~-G~~v~~~~-------aIiIlTsn~f~ 784 (854)
++||||+++++.++..|+.+++++++.-.. ++.+...+ .+||+|+|.-+
T Consensus 69 l~lDEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~ 125 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD 125 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST
T ss_pred EEECCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC
Confidence 999999999999999999999999888433 34454443 89999999655
No 78
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.04 E-value=1.4e-09 Score=124.22 Aligned_cols=137 Identities=20% Similarity=0.233 Sum_probs=85.1
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCc----eE---E
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNN----FV---S 690 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~----~i---~ 690 (854)
..|+||+.++..|.+++...+ -...+||+||+|+|||++|+++|+.+++.... .. .
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----------------~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~ 78 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----------------VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVT 78 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----------------cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCC
Confidence 468999999998888776532 24579999999999999999999999763200 00 0
Q ss_pred EccccccCcCCCccccc-cccccCCCCC-CchHH--HHHHHHHcCC----CEEEEEecCCCCCHHHHHHHHHhhhcCeEe
Q 003038 691 IALSSFSSTRADSTEDS-RNKRSRDEQS-CSYIE--RFAEAVSNNP----HRVFLIEDVEQADYCSQKGFKRAIESGRIV 762 (854)
Q Consensus 691 id~s~~~~~~~~s~e~~-~~~rl~~~~g-~g~~e--~L~eav~~~p----~~ViliDEieka~~~v~~~Ll~~le~G~l~ 762 (854)
--|..+..+...-...| .+.. +.+.. .+..+ .+.+.+...| ++||+|||+|+++...++.|+++|++.
T Consensus 79 ~~c~~c~~c~~~~~~~~~n~~~-~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep--- 154 (397)
T PRK14955 79 EPCGECESCRDFDAGTSLNISE-FDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEP--- 154 (397)
T ss_pred CCCCCCHHHHHHhcCCCCCeEe-ecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcC---
Confidence 00111110000000000 0000 11111 13443 4556665444 689999999999999999999999962
Q ss_pred cCCCceeecCCeEEEEecCCC
Q 003038 763 TSSGDEVSLGDAIVILSCESF 783 (854)
Q Consensus 763 d~~G~~v~~~~aIiIlTsn~f 783 (854)
-..++|||+++..
T Consensus 155 --------~~~t~~Il~t~~~ 167 (397)
T PRK14955 155 --------PPHAIFIFATTEL 167 (397)
T ss_pred --------CCCeEEEEEeCCh
Confidence 2366788877543
No 79
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.04 E-value=7.2e-10 Score=124.58 Aligned_cols=137 Identities=12% Similarity=0.139 Sum_probs=85.8
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCC-ceE-------
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHN-NFV------- 689 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~-~~i------- 689 (854)
..|+||++++..+.+++.+.| -.+.+||+||+|+||+.+|..+|+.++.... .-.
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r-----------------l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR-----------------LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC-----------------CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 468999999999999988643 2457999999999999999999999986431 000
Q ss_pred EEc-cccccCcCCCccccc----cccccCCCCC------CchHH--HHHHHHHc----CCCEEEEEecCCCCCHHHHHHH
Q 003038 690 SIA-LSSFSSTRADSTEDS----RNKRSRDEQS------CSYIE--RFAEAVSN----NPHRVFLIEDVEQADYCSQKGF 752 (854)
Q Consensus 690 ~id-~s~~~~~~~~s~e~~----~~~rl~~~~g------~g~~e--~L~eav~~----~p~~ViliDEieka~~~v~~~L 752 (854)
.++ +..+..++......| .+.......+ .+.++ .+.+.+.. ..++||+|||+|++++..+|.|
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaL 161 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANAL 161 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHH
Confidence 000 000100000000011 1111000111 12333 34444443 4468999999999999999999
Q ss_pred HHhhhcCeEecCCCceeecCCeEEEEecCC
Q 003038 753 KRAIESGRIVTSSGDEVSLGDAIVILSCES 782 (854)
Q Consensus 753 l~~le~G~l~d~~G~~v~~~~aIiIlTsn~ 782 (854)
++.+|+-. .+++|||+|+.
T Consensus 162 LK~LEepp-----------~~~~~IL~t~~ 180 (365)
T PRK07471 162 LKVLEEPP-----------ARSLFLLVSHA 180 (365)
T ss_pred HHHHhcCC-----------CCeEEEEEECC
Confidence 99999731 46778888864
No 80
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.04 E-value=1.3e-09 Score=126.84 Aligned_cols=136 Identities=17% Similarity=0.171 Sum_probs=84.4
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCc---eEEEccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNN---FVSIALS 694 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~---~i~id~s 694 (854)
..++||++++..+.+++... +..+.+||+||+|+|||++|++||+.+...... ....-|.
T Consensus 21 ~dliGq~~vv~~L~~ai~~~-----------------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~ 83 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILND-----------------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCE 83 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----------------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCC
Confidence 34699999999998887753 234689999999999999999999999642110 0000000
Q ss_pred cccCcCCCccccc-cccccCCCCC-CchHH--HHHHHHHcCC----CEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCC
Q 003038 695 SFSSTRADSTEDS-RNKRSRDEQS-CSYIE--RFAEAVSNNP----HRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSG 766 (854)
Q Consensus 695 ~~~~~~~~s~e~~-~~~rl~~~~g-~g~~e--~L~eav~~~p----~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G 766 (854)
.+..+.......| .+.. ++... .|..+ .+.+.+...| ++||+|||+|.++...++.|++.|++.
T Consensus 84 ~C~~C~~i~~~~h~Dv~e-idaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEep------- 155 (507)
T PRK06645 84 QCTNCISFNNHNHPDIIE-IDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEP------- 155 (507)
T ss_pred CChHHHHHhcCCCCcEEE-eeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhc-------
Confidence 0000000000000 0000 11111 13333 4555555544 789999999999999999999999962
Q ss_pred ceeecCCeEEEEecCC
Q 003038 767 DEVSLGDAIVILSCES 782 (854)
Q Consensus 767 ~~v~~~~aIiIlTsn~ 782 (854)
-.+++|||.++.
T Consensus 156 ----p~~~vfI~aTte 167 (507)
T PRK06645 156 ----PPHIIFIFATTE 167 (507)
T ss_pred ----CCCEEEEEEeCC
Confidence 346778887754
No 81
>CHL00176 ftsH cell division protein; Validated
Probab=99.03 E-value=9.2e-10 Score=131.53 Aligned_cols=152 Identities=12% Similarity=0.102 Sum_probs=105.1
Q ss_pred HHHHHHHHHHhhccC---------cCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHH
Q 003038 212 NEDVMYVIENLMSKR---------KRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVE 282 (854)
Q Consensus 212 ~~ei~~v~~~L~r~~---------k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E 282 (854)
.++++.+++.|.... .++++|+||||+|||.+++++|... ++.++.++.+.|...+.|...
T Consensus 192 k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~----------~~p~i~is~s~f~~~~~g~~~ 261 (638)
T CHL00176 192 KEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------EVPFFSISGSEFVEMFVGVGA 261 (638)
T ss_pred HHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeeeccHHHHHHHhhhhhH
Confidence 466777776665432 3589999999999999999999763 568999999988888888888
Q ss_pred HHHHHHHHHHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhccc---CCCCceEEEEEecCHHHH
Q 003038 283 QRVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG---IGENARFWLMGIATFQSY 358 (854)
Q Consensus 283 ~rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~---~~g~g~l~lIgatT~~ey 358 (854)
.++++++..++.. .|+||||||||.+ ..+..+..+ .+ ...+. -+..||.. ..++..+.+||+|+..+.
T Consensus 262 ~~vr~lF~~A~~~--~P~ILfIDEID~l~~~r~~~~~~-~~--~e~~~---~L~~LL~~~dg~~~~~~ViVIaaTN~~~~ 333 (638)
T CHL00176 262 ARVRDLFKKAKEN--SPCIVFIDEIDAVGRQRGAGIGG-GN--DEREQ---TLNQLLTEMDGFKGNKGVIVIAATNRVDI 333 (638)
T ss_pred HHHHHHHHHHhcC--CCcEEEEecchhhhhcccCCCCC-Cc--HHHHH---HHHHHHhhhccccCCCCeeEEEecCchHh
Confidence 9999999999875 7999999999999 443221000 00 01112 23344421 122236999999987653
Q ss_pred HHhhccCCchhhhhcc-CCCCCCCchHHH
Q 003038 359 MRCKSGHPSLETLWSL-HPLTIPAGSLSL 386 (854)
Q Consensus 359 ~k~~~~~pale~~~~~-~~v~i~~~sl~~ 386 (854)
.||+|-|.-|| ..|.|+.|++..
T Consensus 334 -----LD~ALlRpGRFd~~I~v~lPd~~~ 357 (638)
T CHL00176 334 -----LDAALLRPGRFDRQITVSLPDREG 357 (638)
T ss_pred -----hhhhhhccccCceEEEECCCCHHH
Confidence 57888774345 346666666544
No 82
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.5e-08 Score=119.02 Aligned_cols=127 Identities=11% Similarity=0.144 Sum_probs=85.7
Q ss_pred HHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCC
Q 003038 219 IENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGR 298 (854)
Q Consensus 219 ~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~ 298 (854)
.+.+.....+.++++|+||+|||.++++++.. +...+.++.....+++.|+.+.++..++..++.. .
T Consensus 10 ~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~--~ 76 (494)
T COG0464 10 FKKLGIEPPKGVLLHGPPGTGKTLLARALANE-----------GAEFLSINGPEILSKYVGESELRLRELFEEAEKL--A 76 (494)
T ss_pred HHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-----------cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHh--C
Confidence 34445567889999999999999999999976 2233555556667779999999999999999986 5
Q ss_pred CeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchhh
Q 003038 299 GIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLET 370 (854)
Q Consensus 299 ~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale~ 370 (854)
+.|+|+||++.+ ......... .....+..+..++.... ++.+.++|+|... ...+|++.+
T Consensus 77 ~~ii~~d~~~~~~~~~~~~~~~------~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~-----~~~~~a~~~ 137 (494)
T COG0464 77 PSIIFIDEIDALAPKRSSDQGE------VERRVVAQLLALMDGLK-RGQVIVIGATNRP-----DGLDPAKRR 137 (494)
T ss_pred CCeEeechhhhcccCccccccc------hhhHHHHHHHHhccccc-CCceEEEeecCCc-----cccChhHhC
Confidence 689999999999 654431000 11234444444443212 3346666644332 345666655
No 83
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.02 E-value=8.8e-10 Score=120.14 Aligned_cols=138 Identities=10% Similarity=0.067 Sum_probs=96.2
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeCc
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLGD 306 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfide 306 (854)
..+++|+||||||||++|+++|+.+..-. .+....++.++...+...+.|+.+.++.++++.+. +.||||||
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g---~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~-----~gvL~iDE 129 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLG---YVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRAM-----GGVLFIDE 129 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcC---CcccceEEEecHHHHhHhhcccchHHHHHHHHHcc-----CcEEEEec
Confidence 44789999999999999999998876421 22334688888888888888888888877777653 35899999
Q ss_pred cccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchhhhhcc-CCCCCCCchH
Q 003038 307 LEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLETLWSL-HPLTIPAGSL 384 (854)
Q Consensus 307 l~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~-~~v~i~~~sl 384 (854)
++.+ ..+.... + .......+..++.. +++++++|++++.+.-..+...+|+|.+ || +.|.+|+.+.
T Consensus 130 i~~L~~~~~~~~------~--~~~~~~~Ll~~le~--~~~~~~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~ 197 (284)
T TIGR02880 130 AYYLYRPDNERD------Y--GQEAIEILLQVMEN--QRDDLVVILAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSE 197 (284)
T ss_pred hhhhccCCCccc------h--HHHHHHHHHHHHhc--CCCCEEEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCH
Confidence 9999 4322110 0 01122333344432 2236999999998766666778999999 77 4577777653
No 84
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.01 E-value=1.3e-09 Score=121.43 Aligned_cols=139 Identities=19% Similarity=0.180 Sum_probs=98.7
Q ss_pred HHHHHHHhhcCcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCc
Q 003038 608 NLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNN 687 (854)
Q Consensus 608 ~l~~L~~~L~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~ 687 (854)
.+..+...+.+.++|+++++..+..++.. .+.+||.||+|+|||.+|+.+|+.+. .+
T Consensus 14 ~~~~~~~~~~~~~~g~~~~~~~~l~a~~~--------------------~~~vll~G~PG~gKT~la~~lA~~l~---~~ 70 (329)
T COG0714 14 ILGKIRSELEKVVVGDEEVIELALLALLA--------------------GGHVLLEGPPGVGKTLLARALARALG---LP 70 (329)
T ss_pred HHHHHHhhcCCeeeccHHHHHHHHHHHHc--------------------CCCEEEECCCCccHHHHHHHHHHHhC---CC
Confidence 45677888888999999888887777664 24689999999999999999999993 68
Q ss_pred eEEEccccccCcCCCccc----c----ccccccCCCCCCchHHHHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcC
Q 003038 688 FVSIALSSFSSTRADSTE----D----SRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESG 759 (854)
Q Consensus 688 ~i~id~s~~~~~~~~s~e----~----~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G 759 (854)
|+++.++......+.-+. . ....++..+| ++.+++ .|+|+|||.+++|.+|+.|+++|+++
T Consensus 71 ~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gp-------l~~~~~----~ill~DEInra~p~~q~aLl~~l~e~ 139 (329)
T COG0714 71 FVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGP-------LFAAVR----VILLLDEINRAPPEVQNALLEALEER 139 (329)
T ss_pred eEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCC-------cccccc----eEEEEeccccCCHHHHHHHHHHHhCc
Confidence 999998866531111100 0 0111111111 222222 69999999999999999999999999
Q ss_pred eEecCCCce-eecCCeEE-EEecC
Q 003038 760 RIVTSSGDE-VSLGDAIV-ILSCE 781 (854)
Q Consensus 760 ~l~d~~G~~-v~~~~aIi-IlTsn 781 (854)
+++.. |.. +.+....+ |.|+|
T Consensus 140 ~vtv~-~~~~~~~~~~f~viaT~N 162 (329)
T COG0714 140 QVTVP-GLTTIRLPPPFIVIATQN 162 (329)
T ss_pred EEEEC-CcCCcCCCCCCEEEEccC
Confidence 99964 333 66765544 45667
No 85
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.01 E-value=1.7e-09 Score=128.48 Aligned_cols=137 Identities=20% Similarity=0.239 Sum_probs=86.2
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCC---c-eEE---
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHN---N-FVS--- 690 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~---~-~i~--- 690 (854)
+.|+||+.++..|.+++...+. ...+||+||+|+|||++|+.||+.++.... + +.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri-----------------~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~ 78 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRV-----------------GHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT 78 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-----------------CeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC
Confidence 4679999999998888765322 357999999999999999999999976320 0 000
Q ss_pred EccccccCcCCCccccc-cccccCCCCCC-chHH--HHHHHHHcCC----CEEEEEecCCCCCHHHHHHHHHhhhcCeEe
Q 003038 691 IALSSFSSTRADSTEDS-RNKRSRDEQSC-SYIE--RFAEAVSNNP----HRVFLIEDVEQADYCSQKGFKRAIESGRIV 762 (854)
Q Consensus 691 id~s~~~~~~~~s~e~~-~~~rl~~~~g~-g~~e--~L~eav~~~p----~~ViliDEieka~~~v~~~Ll~~le~G~l~ 762 (854)
-.|..+..+...-...| .+.. +.+... +.++ .+.+.+...| ++||+|||+|+++...+|.|+++||+-
T Consensus 79 ~~Cg~C~sC~~~~~g~~~n~~~-~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEeP--- 154 (620)
T PRK14954 79 EPCGECESCRDFDAGTSLNISE-FDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEP--- 154 (620)
T ss_pred CCCccCHHHHHHhccCCCCeEE-ecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCC---
Confidence 01111110000000001 1111 111111 3443 4556665444 689999999999999999999999972
Q ss_pred cCCCceeecCCeEEEEecCCC
Q 003038 763 TSSGDEVSLGDAIVILSCESF 783 (854)
Q Consensus 763 d~~G~~v~~~~aIiIlTsn~f 783 (854)
-.+++|||+++..
T Consensus 155 --------p~~tv~IL~t~~~ 167 (620)
T PRK14954 155 --------PPHAIFIFATTEL 167 (620)
T ss_pred --------CCCeEEEEEeCCh
Confidence 2457788877644
No 86
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.01 E-value=2.4e-09 Score=125.11 Aligned_cols=134 Identities=16% Similarity=0.111 Sum_probs=85.0
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccC
Q 003038 619 KVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSS 698 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~ 698 (854)
.|+||++++..|.+.+... +..+.+||+||+|+|||++|++||+.++...... ..|..+..
T Consensus 15 dvvGq~~v~~~L~~~i~~~-----------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~--~~cg~C~s 75 (504)
T PRK14963 15 EVVGQEHVKEVLLAALRQG-----------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDP--KPCGECES 75 (504)
T ss_pred HhcChHHHHHHHHHHHHcC-----------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCC--CCCCcChh
Confidence 5899999999998887753 2235789999999999999999999996422110 01111111
Q ss_pred cCCCccccccccccCCCCC-CchHH--HHHHHHHcC----CCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeec
Q 003038 699 TRADSTEDSRNKRSRDEQS-CSYIE--RFAEAVSNN----PHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSL 771 (854)
Q Consensus 699 ~~~~s~e~~~~~rl~~~~g-~g~~e--~L~eav~~~----p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~ 771 (854)
+.......|..-..+.+.+ .+..+ .+.+.+... .++||+|||++.++...++.|++.|++. -
T Consensus 76 c~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep-----------~ 144 (504)
T PRK14963 76 CLAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEP-----------P 144 (504)
T ss_pred hHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhC-----------C
Confidence 1000000111000111111 14333 455555543 4689999999999999999999999962 2
Q ss_pred CCeEEEEecCC
Q 003038 772 GDAIVILSCES 782 (854)
Q Consensus 772 ~~aIiIlTsn~ 782 (854)
.+++|||+++.
T Consensus 145 ~~t~~Il~t~~ 155 (504)
T PRK14963 145 EHVIFILATTE 155 (504)
T ss_pred CCEEEEEEcCC
Confidence 46778888864
No 87
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.00 E-value=1.4e-09 Score=125.65 Aligned_cols=131 Identities=15% Similarity=0.164 Sum_probs=86.2
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCce------EEE
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNF------VSI 691 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~------i~i 691 (854)
..|+||+.++..+.+.+...+ ....+||+||+|+|||++|+.+|+.+++....- .+.
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----------------i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~ 79 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----------------AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCA 79 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----------------CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccH
Confidence 468999999999888887532 245799999999999999999999998642110 001
Q ss_pred ccccccCcCCCccccc-cccccCCCCCC-chHH--HHHHHHHc----CCCEEEEEecCCCCCHHHHHHHHHhhhcCeEec
Q 003038 692 ALSSFSSTRADSTEDS-RNKRSRDEQSC-SYIE--RFAEAVSN----NPHRVFLIEDVEQADYCSQKGFKRAIESGRIVT 763 (854)
Q Consensus 692 d~s~~~~~~~~s~e~~-~~~rl~~~~g~-g~~e--~L~eav~~----~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d 763 (854)
+|..+.. ..+ .+..+ .+... |..+ .+.+.+.. .+++||+|||+|+++...++.|+++||+.
T Consensus 80 ~C~~i~~------~~~~d~~~i-~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep---- 148 (451)
T PRK06305 80 SCKEISS------GTSLDVLEI-DGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEP---- 148 (451)
T ss_pred HHHHHhc------CCCCceEEe-eccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcC----
Confidence 1111110 000 01111 11112 4443 45555543 46899999999999999999999999972
Q ss_pred CCCceeecCCeEEEEecCCC
Q 003038 764 SSGDEVSLGDAIVILSCESF 783 (854)
Q Consensus 764 ~~G~~v~~~~aIiIlTsn~f 783 (854)
-.+++|||+|+..
T Consensus 149 -------~~~~~~Il~t~~~ 161 (451)
T PRK06305 149 -------PQHVKFFLATTEI 161 (451)
T ss_pred -------CCCceEEEEeCCh
Confidence 1366788888643
No 88
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.00 E-value=1.5e-09 Score=133.16 Aligned_cols=140 Identities=11% Similarity=0.103 Sum_probs=100.1
Q ss_pred cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEe
Q 003038 225 KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNL 304 (854)
Q Consensus 225 ~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfi 304 (854)
+..++++|+||||||||++++++|... +..|+.++.+.+.+.|.|+.|+.+++++..++.. .|+||||
T Consensus 485 ~~~~giLL~GppGtGKT~lakalA~e~----------~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~--~p~iifi 552 (733)
T TIGR01243 485 RPPKGVLLFGPPGTGKTLLAKAVATES----------GANFIAVRGPEILSKWVGESEKAIREIFRKARQA--APAIIFF 552 (733)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhc----------CCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhc--CCEEEEE
Confidence 355678999999999999999999863 5689999999999999999999999999999986 7999999
Q ss_pred Cccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchhhhhcc-CCCCCCCc
Q 003038 305 GDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLETLWSL-HPLTIPAG 382 (854)
Q Consensus 305 del~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~-~~v~i~~~ 382 (854)
||++.+ ..++.... ....+..+..+-..+.+-...+.+.+||||+..+ ..||++-|--|| +.|.|+-|
T Consensus 553 DEid~l~~~r~~~~~-----~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~-----~ld~allRpgRfd~~i~v~~P 622 (733)
T TIGR01243 553 DEIDAIAPARGARFD-----TSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPD-----ILDPALLRPGRFDRLILVPPP 622 (733)
T ss_pred EChhhhhccCCCCCC-----ccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChh-----hCCHhhcCCCccceEEEeCCc
Confidence 999999 54432110 1112233333333332211122699999998765 468998763345 34566666
Q ss_pred hHHH
Q 003038 383 SLSL 386 (854)
Q Consensus 383 sl~~ 386 (854)
+...
T Consensus 623 d~~~ 626 (733)
T TIGR01243 623 DEEA 626 (733)
T ss_pred CHHH
Confidence 5443
No 89
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.99 E-value=2.2e-09 Score=124.46 Aligned_cols=134 Identities=17% Similarity=0.174 Sum_probs=81.9
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..|+||++++..|..++... +....+||+||+|+|||++|+++|+.++....... ..|..+.
T Consensus 14 ~divGq~~i~~~L~~~i~~~-----------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~-~pc~~c~ 75 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKN-----------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGV-EPCNECR 75 (472)
T ss_pred HHccCcHHHHHHHHHHHHcC-----------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCC-CCCcccH
Confidence 45899999988888776642 23457899999999999999999999965321100 0000000
Q ss_pred CcCCCccccc-cccccCCCC-CCchHH--HHHHHHHcCC----CEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCcee
Q 003038 698 STRADSTEDS-RNKRSRDEQ-SCSYIE--RFAEAVSNNP----HRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEV 769 (854)
Q Consensus 698 ~~~~~s~e~~-~~~rl~~~~-g~g~~e--~L~eav~~~p----~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v 769 (854)
.+.......+ .+-. +.+. ..|..+ .+.+.++..| +.||+|||+|.++...++.|+..|++.
T Consensus 76 ~c~~i~~g~~~dv~e-l~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p---------- 144 (472)
T PRK14962 76 ACRSIDEGTFMDVIE-LDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEP---------- 144 (472)
T ss_pred HHHHHhcCCCCccEE-EeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhC----------
Confidence 0000000000 0000 1111 113333 4555555444 689999999999999999999999961
Q ss_pred ecCCeEEEEecC
Q 003038 770 SLGDAIVILSCE 781 (854)
Q Consensus 770 ~~~~aIiIlTsn 781 (854)
-.+++||++|+
T Consensus 145 -~~~vv~Ilatt 155 (472)
T PRK14962 145 -PSHVVFVLATT 155 (472)
T ss_pred -CCcEEEEEEeC
Confidence 13567787765
No 90
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.99 E-value=1.6e-09 Score=119.59 Aligned_cols=133 Identities=13% Similarity=0.116 Sum_probs=87.2
Q ss_pred cCcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCC--ceEEEccc
Q 003038 617 EKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHN--NFVSIALS 694 (854)
Q Consensus 617 ~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~--~~i~id~s 694 (854)
...|+||++++..+..++...|. .+.+||+||.|+||+.+|+++|+.+++... ...+-.+.
T Consensus 3 f~~iiGq~~~~~~L~~~i~~~rl-----------------~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~ 65 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQNRI-----------------APAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLE 65 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHhCCC-----------------CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccc
Confidence 35789999999999999887433 358999999999999999999999987541 00000000
Q ss_pred cccCcCCCcccccccc-------ccC-------------CCCCCchHH--HHHHHHHcCC----CEEEEEecCCCCCHHH
Q 003038 695 SFSSTRADSTEDSRNK-------RSR-------------DEQSCSYIE--RFAEAVSNNP----HRVFLIEDVEQADYCS 748 (854)
Q Consensus 695 ~~~~~~~~s~e~~~~~-------rl~-------------~~~g~g~~e--~L~eav~~~p----~~ViliDEieka~~~v 748 (854)
... +. +-+.+. +.+ ..+..+.++ .+.+.+...| ++||+||++|+++...
T Consensus 66 ~~~--hP---Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~a 140 (314)
T PRK07399 66 EGN--HP---DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAA 140 (314)
T ss_pred cCC--CC---CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHH
Confidence 000 00 000000 000 000012222 4666666544 7899999999999999
Q ss_pred HHHHHHhhhcCeEecCCCceeecCCeEEEEecCCC
Q 003038 749 QKGFKRAIESGRIVTSSGDEVSLGDAIVILSCESF 783 (854)
Q Consensus 749 ~~~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn~f 783 (854)
+|+||+.||+- . +++|||+|+..
T Consensus 141 aNaLLK~LEEP----------p--~~~fILi~~~~ 163 (314)
T PRK07399 141 ANALLKTLEEP----------G--NGTLILIAPSP 163 (314)
T ss_pred HHHHHHHHhCC----------C--CCeEEEEECCh
Confidence 99999999972 2 56788888644
No 91
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.99 E-value=3.1e-09 Score=114.46 Aligned_cols=114 Identities=12% Similarity=0.156 Sum_probs=76.8
Q ss_pred cccccHHHHHHHHHHHHH-------hhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhC----CCCc
Q 003038 619 KVPWQKDTVYDIANTVLK-------CRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFG----SHNN 687 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~-------~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg----~~~~ 687 (854)
.++|++++...|...+.. .+.|+..+ .....++|+||+|+|||++|+.+|+.++. +...
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~----------~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~ 76 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTS----------KQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGH 76 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCC----------CCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCc
Confidence 379999888777654432 23455432 23358999999999999999999998853 2234
Q ss_pred eEEEccccccCcCCCccccccccccCCCCCCchH-HHHHHHHHcCCCEEEEEecCCCCC--------HHHHHHHHHhhhc
Q 003038 688 FVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYI-ERFAEAVSNNPHRVFLIEDVEQAD--------YCSQKGFKRAIES 758 (854)
Q Consensus 688 ~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~-e~L~eav~~~p~~ViliDEieka~--------~~v~~~Ll~~le~ 758 (854)
++.++++.+. . ..+ |.. ..+.+.+.+....||||||||.+. .+.++.|++.|++
T Consensus 77 ~v~~~~~~l~-------~-----~~~-----g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~ 139 (261)
T TIGR02881 77 LIEVERADLV-------G-----EYI-----GHTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMED 139 (261)
T ss_pred eEEecHHHhh-------h-----hhc-----cchHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhc
Confidence 5555544332 0 001 221 245566666667899999999865 4688999999987
Q ss_pred C
Q 003038 759 G 759 (854)
Q Consensus 759 G 759 (854)
+
T Consensus 140 ~ 140 (261)
T TIGR02881 140 N 140 (261)
T ss_pred c
Confidence 4
No 92
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.99 E-value=3.4e-09 Score=123.61 Aligned_cols=135 Identities=13% Similarity=0.122 Sum_probs=83.2
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..|+||++++..+...+...+ -...+||+||+|+|||++|+.||+.+++....=. --|..+.
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-----------------l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~-~pC~~C~ 75 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-----------------LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSS-TPCDTCI 75 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----------------CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCC-CCCcccH
Confidence 458999999999998886432 2357899999999999999999999975321100 0000000
Q ss_pred CcCCCcccccc-ccccCCCCC-CchHH--HHHHHHHc----CCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCcee
Q 003038 698 STRADSTEDSR-NKRSRDEQS-CSYIE--RFAEAVSN----NPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEV 769 (854)
Q Consensus 698 ~~~~~s~e~~~-~~rl~~~~g-~g~~e--~L~eav~~----~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v 769 (854)
.+.......|. +.. +.+.. .|..+ .+.+.+.. .+++||+|||+|+++.+.+|+|++.||+-
T Consensus 76 ~C~~~~~~~h~dv~e-ldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEp---------- 144 (535)
T PRK08451 76 QCQSALENRHIDIIE-MDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEP---------- 144 (535)
T ss_pred HHHHHhhcCCCeEEE-eccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhc----------
Confidence 00000000000 000 01111 13333 23333333 34789999999999999999999999972
Q ss_pred ecCCeEEEEecCC
Q 003038 770 SLGDAIVILSCES 782 (854)
Q Consensus 770 ~~~~aIiIlTsn~ 782 (854)
-.+++|||+|+.
T Consensus 145 -p~~t~FIL~ttd 156 (535)
T PRK08451 145 -PSYVKFILATTD 156 (535)
T ss_pred -CCceEEEEEECC
Confidence 246778998864
No 93
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.98 E-value=1.9e-09 Score=119.22 Aligned_cols=125 Identities=21% Similarity=0.307 Sum_probs=85.0
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..|+||+.++..+...+... +-...+||+||.|+||+++|+.+|+.+++....-.+.|+..+.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-----------------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~ 66 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-----------------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFK 66 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-----------------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEec
Confidence 46899999999998887542 2345889999999999999999999997642110001111110
Q ss_pred CcCCCccccccccccCCCCCCchHH--HHHHHHHcC----CCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeec
Q 003038 698 STRADSTEDSRNKRSRDEQSCSYIE--RFAEAVSNN----PHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSL 771 (854)
Q Consensus 698 ~~~~~s~e~~~~~rl~~~~g~g~~e--~L~eav~~~----p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~ 771 (854)
. ..+...+.++ .+.+.+... .++||+||++|+++...+|.|++.||+ .-
T Consensus 67 -------------~-~~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEe-----------pp 121 (313)
T PRK05564 67 -------------P-INKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEE-----------PP 121 (313)
T ss_pred -------------c-ccCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcC-----------CC
Confidence 0 0111123333 344444344 468999999999999999999999996 22
Q ss_pred CCeEEEEecCCCC
Q 003038 772 GDAIVILSCESFS 784 (854)
Q Consensus 772 ~~aIiIlTsn~f~ 784 (854)
.+++|||+|+..+
T Consensus 122 ~~t~~il~~~~~~ 134 (313)
T PRK05564 122 KGVFIILLCENLE 134 (313)
T ss_pred CCeEEEEEeCChH
Confidence 5778898885433
No 94
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=3.2e-09 Score=115.03 Aligned_cols=146 Identities=14% Similarity=0.187 Sum_probs=106.1
Q ss_pred cccccHHHHHHHHHHHH--------HhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEE
Q 003038 619 KVPWQKDTVYDIANTVL--------KCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVS 690 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~--------~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~ 690 (854)
.|-|-++-+++|.++|. -.+.|+..|+ =+|++||||+|||.|||++|... ...||+
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPK-------------GVLLYGPPGTGKTLLAkAVA~~T---~AtFIr 215 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPK-------------GVLLYGPPGTGKTLLAKAVANQT---DATFIR 215 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCC-------------ceEeeCCCCCcHHHHHHHHHhcc---CceEEE
Confidence 35666777777877773 2356665442 36889999999999999999965 678999
Q ss_pred EccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEecCCC-----------CCHHHHHHHHHhhhcC
Q 003038 691 IALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQ-----------ADYCSQKGFKRAIESG 759 (854)
Q Consensus 691 id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliDEiek-----------a~~~v~~~Ll~~le~G 759 (854)
+..|++. +++ + +-|.-....+++..+++..+||||||||- .+.+||..+++.|-+=
T Consensus 216 vvgSElV-------qKY-----i-GEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~ql 282 (406)
T COG1222 216 VVGSELV-------QKY-----I-GEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQL 282 (406)
T ss_pred eccHHHH-------HHH-----h-ccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhc
Confidence 9999887 443 2 11112223688888999999999999994 4789999999999751
Q ss_pred eEecCCCceeecCCeEEEEecCCCCCCCCCCCCCcc--CCCC
Q 003038 760 RIVTSSGDEVSLGDAIVILSCESFSSRSRACSPPTK--QKSD 799 (854)
Q Consensus 760 ~l~d~~G~~v~~~~aIiIlTsn~f~~~s~~~sp~~~--~~~~ 799 (854)
-=-|. ..|.-|||.||-+|..-++.=.|=| +++.
T Consensus 283 DGFD~------~~nvKVI~ATNR~D~LDPALLRPGR~DRkIE 318 (406)
T COG1222 283 DGFDP------RGNVKVIMATNRPDILDPALLRPGRFDRKIE 318 (406)
T ss_pred cCCCC------CCCeEEEEecCCccccChhhcCCCcccceee
Confidence 11111 3578899999999988888655544 4444
No 95
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.97 E-value=2.2e-09 Score=121.96 Aligned_cols=141 Identities=12% Similarity=0.113 Sum_probs=97.4
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeC
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLG 305 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfid 305 (854)
..++++|+||||+|||++++++|... +..++.+..+.+...|.|+.+..+++++..++.. .|+|||||
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l----------~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~--~P~ILfID 245 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHT----------TATFIRVVGSEFVQKYLGEGPRMVRDVFRLAREN--APSIIFID 245 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhc----------CCCEEEEehHHHHHHhcchhHHHHHHHHHHHHhc--CCeEEEEE
Confidence 46789999999999999999999763 5678888888888889999999999999999875 79999999
Q ss_pred ccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchhhhhcc-CCCCCCCch
Q 003038 306 DLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLETLWSL-HPLTIPAGS 383 (854)
Q Consensus 306 el~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~-~~v~i~~~s 383 (854)
|++.+ ..+.....+ ....+.+..+++-+.+....+.+.+.+|+||+..+ ..||+|-|--|| +.|.|+.|+
T Consensus 246 EID~i~~~r~~~~~~---~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d-----~LDpAllR~GRfd~~I~~~~P~ 317 (398)
T PTZ00454 246 EVDSIATKRFDAQTG---ADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD-----TLDPALLRPGRLDRKIEFPLPD 317 (398)
T ss_pred CHhhhccccccccCC---ccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCch-----hCCHHHcCCCcccEEEEeCCcC
Confidence 99999 543211001 01112234444434342211223599999998654 578888763344 335666555
Q ss_pred HHH
Q 003038 384 LSL 386 (854)
Q Consensus 384 l~~ 386 (854)
...
T Consensus 318 ~~~ 320 (398)
T PTZ00454 318 RRQ 320 (398)
T ss_pred HHH
Confidence 433
No 96
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.97 E-value=3.8e-09 Score=126.26 Aligned_cols=145 Identities=19% Similarity=0.192 Sum_probs=92.1
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..|+||++++..+..++... +..+.+||+||+|+|||++|++||+.+++.......-.|..+.
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~-----------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~ 80 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSN-----------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECI 80 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHH
Confidence 45799999999999988753 2345789999999999999999999997643211000111111
Q ss_pred CcCCCccccccccccCCCCCC-chHH--HHHHHHHcCC----CEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceee
Q 003038 698 STRADSTEDSRNKRSRDEQSC-SYIE--RFAEAVSNNP----HRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVS 770 (854)
Q Consensus 698 ~~~~~s~e~~~~~rl~~~~g~-g~~e--~L~eav~~~p----~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~ 770 (854)
. +. +.+.---.+.+.+. |..+ .|.+.+...| ++|++|||+|.++...++.|++.||+.
T Consensus 81 ~---~~-~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEP----------- 145 (725)
T PRK07133 81 E---NV-NNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEP----------- 145 (725)
T ss_pred H---hh-cCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcC-----------
Confidence 0 00 00000000111121 4443 5667776654 689999999999999999999999963
Q ss_pred cCCeEEEEecCCCCCCC-CCCCCCc
Q 003038 771 LGDAIVILSCESFSSRS-RACSPPT 794 (854)
Q Consensus 771 ~~~aIiIlTsn~f~~~s-~~~sp~~ 794 (854)
-.+++|||+|+..+... +..|.|+
T Consensus 146 P~~tifILaTte~~KLl~TI~SRcq 170 (725)
T PRK07133 146 PKHVIFILATTEVHKIPLTILSRVQ 170 (725)
T ss_pred CCceEEEEEcCChhhhhHHHHhhce
Confidence 24667888776543332 2244443
No 97
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.96 E-value=3.1e-09 Score=126.91 Aligned_cols=135 Identities=20% Similarity=0.183 Sum_probs=84.1
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..|+||++++..|...+... +-...+||+||+|+|||++|+.+|+.++.....----.|..+.
T Consensus 17 ~~viGq~~~~~~L~~~i~~~-----------------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~ 79 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATN-----------------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECE 79 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcch
Confidence 46899999999998888753 2245799999999999999999999996421100000011110
Q ss_pred CcCCCccccc-cccccCCCCCC-chHH--HHHHHHHcCC----CEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCcee
Q 003038 698 STRADSTEDS-RNKRSRDEQSC-SYIE--RFAEAVSNNP----HRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEV 769 (854)
Q Consensus 698 ~~~~~s~e~~-~~~rl~~~~g~-g~~e--~L~eav~~~p----~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v 769 (854)
++.......+ .+.. +.+.+. +..+ .+.+.++..| ++||+|||+|+++...++.|+++||+-
T Consensus 80 sC~~~~~~~~~n~~~-ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEep---------- 148 (614)
T PRK14971 80 SCVAFNEQRSYNIHE-LDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEP---------- 148 (614)
T ss_pred HHHHHhcCCCCceEE-ecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCC----------
Confidence 0000000001 0101 111111 2222 3344445444 789999999999999999999999962
Q ss_pred ecCCeEEEEecC
Q 003038 770 SLGDAIVILSCE 781 (854)
Q Consensus 770 ~~~~aIiIlTsn 781 (854)
-.+++|||+|+
T Consensus 149 -p~~tifIL~tt 159 (614)
T PRK14971 149 -PSYAIFILATT 159 (614)
T ss_pred -CCCeEEEEEeC
Confidence 24678999875
No 98
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=2.1e-09 Score=118.56 Aligned_cols=146 Identities=13% Similarity=0.163 Sum_probs=93.5
Q ss_pred ccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCc
Q 003038 620 VPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSST 699 (854)
Q Consensus 620 V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~ 699 (854)
.|||..+...+.+++.+.|. .+.+||.||+|+||+.+|+.+|+.++.....- .-.|..+.++
T Consensus 4 yPW~~~~~~~l~~~~~~~rl-----------------~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~-~~~Cg~C~sC 65 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLG-----------------HHALLFKADSGLGTEQLIRALAQWLMCQTPQG-DQPCGQCHSC 65 (325)
T ss_pred CcchHHHHHHHHHHHHcCCc-----------------ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC-CCCCCCCHHH
Confidence 59999999999999886432 46899999999999999999999997643210 0012211111
Q ss_pred CCCccccccccccCCC-CC--CchHH--HHHHHHHcC----CCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceee
Q 003038 700 RADSTEDSRNKRSRDE-QS--CSYIE--RFAEAVSNN----PHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVS 770 (854)
Q Consensus 700 ~~~s~e~~~~~rl~~~-~g--~g~~e--~L~eav~~~----p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~ 770 (854)
+......|.--..+.| .+ .+.++ .+.+.+... +++|++||++|+|+...+|+||+.||+ .
T Consensus 66 ~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEE-----------P 134 (325)
T PRK06871 66 HLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEE-----------P 134 (325)
T ss_pred HHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcC-----------C
Confidence 0000011110111112 12 25544 455565544 468999999999999999999999997 3
Q ss_pred cCCeEEEEecCCCCC-CCCCCCCCc
Q 003038 771 LGDAIVILSCESFSS-RSRACSPPT 794 (854)
Q Consensus 771 ~~~aIiIlTsn~f~~-~s~~~sp~~ 794 (854)
-.+++|||+|+.-+. .++.-|.|+
T Consensus 135 p~~~~fiL~t~~~~~llpTI~SRC~ 159 (325)
T PRK06871 135 RPNTYFLLQADLSAALLPTIYSRCQ 159 (325)
T ss_pred CCCeEEEEEECChHhCchHHHhhce
Confidence 367889998865333 334345443
No 99
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=2.1e-09 Score=120.22 Aligned_cols=137 Identities=16% Similarity=0.186 Sum_probs=85.6
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCc---eEEE--c
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNN---FVSI--A 692 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~---~i~i--d 692 (854)
.+|+||++++..+..++...| -.+.+||.||.|+|||++|+.+|+.++..... -..+ .
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~gr-----------------l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGK-----------------LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----------------CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 568999999999999987643 24578999999999999999999999763211 0011 0
Q ss_pred cccccCcCCCccccc-c---ccccCCCC------CCchHH--HHHHHHHc----CCCEEEEEecCCCCCHHHHHHHHHhh
Q 003038 693 LSSFSSTRADSTEDS-R---NKRSRDEQ------SCSYIE--RFAEAVSN----NPHRVFLIEDVEQADYCSQKGFKRAI 756 (854)
Q Consensus 693 ~s~~~~~~~~s~e~~-~---~~rl~~~~------g~g~~e--~L~eav~~----~p~~ViliDEieka~~~v~~~Ll~~l 756 (854)
+.....++-.....| . +.+..... ..+.++ .+.+.+.. ..++||+|||+|++++..+|.|++.+
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~L 165 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTL 165 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHH
Confidence 000000000000011 0 11110010 112333 45555543 46799999999999999999999999
Q ss_pred hcCeEecCCCceeecCCeEEEEecCC
Q 003038 757 ESGRIVTSSGDEVSLGDAIVILSCES 782 (854)
Q Consensus 757 e~G~l~d~~G~~v~~~~aIiIlTsn~ 782 (854)
|+.. .+++|||.|+.
T Consensus 166 EEpp-----------~~~~fiLit~~ 180 (351)
T PRK09112 166 EEPP-----------ARALFILISHS 180 (351)
T ss_pred hcCC-----------CCceEEEEECC
Confidence 9731 46678887743
No 100
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.95 E-value=4.6e-09 Score=123.32 Aligned_cols=140 Identities=17% Similarity=0.171 Sum_probs=87.5
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..|+||++++..+.+++...+ ....+||+||+|+|||++|+++|+.++.....-.. -|..+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----------------l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~-~Cg~C~ 77 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----------------LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGD-CCNSCS 77 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----------------CCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC-CCcccH
Confidence 357899999999988876532 23579999999999999999999999753211000 011110
Q ss_pred CcCCCccccccccccCCCCC-CchHH--HHHHHHHcCC----CEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceee
Q 003038 698 STRADSTEDSRNKRSRDEQS-CSYIE--RFAEAVSNNP----HRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVS 770 (854)
Q Consensus 698 ~~~~~s~e~~~~~rl~~~~g-~g~~e--~L~eav~~~p----~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~ 770 (854)
.+.......|.--..+.+.+ .|..+ .+.+.+...| ++||+|||+|.++...++.|+..||+.
T Consensus 78 sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEP----------- 146 (605)
T PRK05896 78 VCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEP----------- 146 (605)
T ss_pred HHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhC-----------
Confidence 00000000000000011111 24433 4555555544 689999999999999999999999962
Q ss_pred cCCeEEEEecCCCCCC
Q 003038 771 LGDAIVILSCESFSSR 786 (854)
Q Consensus 771 ~~~aIiIlTsn~f~~~ 786 (854)
-.+++|||+|+.....
T Consensus 147 p~~tvfIL~Tt~~~KL 162 (605)
T PRK05896 147 PKHVVFIFATTEFQKI 162 (605)
T ss_pred CCcEEEEEECCChHhh
Confidence 2467899888654433
No 101
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=2e-09 Score=127.58 Aligned_cols=153 Identities=12% Similarity=0.103 Sum_probs=113.3
Q ss_pred cHHHHHHHHHHhhcc---------CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHH
Q 003038 211 RNEDVMYVIENLMSK---------RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEV 281 (854)
Q Consensus 211 r~~ei~~v~~~L~r~---------~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~ 281 (854)
=.+||+.++..|.-. -.+.++|+||||||||-+|+++|-. .|+.|++++.+.|+.++.|--
T Consensus 319 AK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGE----------AgVPF~svSGSEFvE~~~g~~ 388 (774)
T KOG0731|consen 319 AKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGE----------AGVPFFSVSGSEFVEMFVGVG 388 (774)
T ss_pred HHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcc----------cCCceeeechHHHHHHhcccc
Confidence 357888888887532 4567999999999999999999965 789999999999999988888
Q ss_pred HHHHHHHHHHHHhhhCCCeEEEeCccccc-ccccc-ccccccccchhhhHHHHHHHhhc-cc--CCCCceEEEEEecCHH
Q 003038 282 EQRVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRAS-SSEQVRGYYCSIEHIIMEIGKLV-CG--IGENARFWLMGIATFQ 356 (854)
Q Consensus 282 E~rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~~-~~~~~~~~~~~~~~~~~~~~~ll-~~--~~g~g~l~lIgatT~~ 356 (854)
..|+++|+..++.. .|+|+|||||+.+ ..+.+ ...+ .+ . ---..+.+|| .. ....+.+.+|++|+-.
T Consensus 389 asrvr~lf~~ar~~--aP~iifideida~~~~r~G~~~~~-~~-~----e~e~tlnQll~emDgf~~~~~vi~~a~tnr~ 460 (774)
T KOG0731|consen 389 ASRVRDLFPLARKN--APSIIFIDEIDAVGRKRGGKGTGG-GQ-D----EREQTLNQLLVEMDGFETSKGVIVLAATNRP 460 (774)
T ss_pred hHHHHHHHHHhhcc--CCeEEEecccccccccccccccCC-CC-h----HHHHHHHHHHHHhcCCcCCCcEEEEeccCCc
Confidence 99999999999986 7999999999999 54421 1000 00 0 0123455666 22 1222469999999865
Q ss_pred HHHHhhccCCchhhhhcc-CCCCCCCchHHH
Q 003038 357 SYMRCKSGHPSLETLWSL-HPLTIPAGSLSL 386 (854)
Q Consensus 357 ey~k~~~~~pale~~~~~-~~v~i~~~sl~~ 386 (854)
. ..||||-|-=|| ..|.|.-|.+.-
T Consensus 461 d-----~ld~allrpGRfdr~i~i~~p~~~~ 486 (774)
T KOG0731|consen 461 D-----ILDPALLRPGRFDRQIQIDLPDVKG 486 (774)
T ss_pred c-----ccCHHhcCCCccccceeccCCchhh
Confidence 5 579999886666 556777776543
No 102
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=3.7e-09 Score=116.40 Aligned_cols=165 Identities=14% Similarity=0.198 Sum_probs=107.0
Q ss_pred HHHHHHHhhcCcccccHHHHHHHHHHHHHhhcCCC---------------------ccc---------CCC---c-CC--
Q 003038 608 NLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTM---------------------RRK---------GKF---K-DH-- 651 (854)
Q Consensus 608 ~l~~L~~~L~~~V~GQ~~av~~Ia~~v~~~rsgl~---------------------~~~---------~~~---~-~~-- 651 (854)
--|.+|+.|.+.|+||+.|.+.++=+|.++..-+. +|. +.. + ..
T Consensus 135 ~PkeI~~~Ldk~VVGQe~AKKvLsVAVYnHYkRI~hn~~s~~~~~a~~s~~~~~~~~P~~~~~~~~~a~~~~~~r~~~~~ 214 (564)
T KOG0745|consen 135 TPKEICEYLDKFVVGQEKAKKVLSVAVYNHYKRIYHNEPSRQKELAEASKSAKDRDNPIELEISESNAQWPNNQRQIAKA 214 (564)
T ss_pred ChHHHHHHhhhheechhhhhheeeehhhHHHHHHhcchHHHHHHHhhhhhcccCCCCcccccccccccccccccchhccc
Confidence 35799999999999999999999888854311000 000 000 0 00
Q ss_pred cccCc------ceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCC-chH-H-
Q 003038 652 SEVKE------ETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSC-SYI-E- 722 (854)
Q Consensus 652 ~~~kp------~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~-g~~-e- 722 (854)
-.... -..+|++||+|+|||.||+.||+.| .-+|.-.||+..+++ || |-+ |
T Consensus 215 ld~~~~dv~LeKSNvLllGPtGsGKTllaqTLAr~l---dVPfaIcDcTtLTQA-----------------GYVGeDVEs 274 (564)
T KOG0745|consen 215 LDEDDEDVELEKSNVLLLGPTGSGKTLLAQTLARVL---DVPFAICDCTTLTQA-----------------GYVGEDVES 274 (564)
T ss_pred ccccccceeeecccEEEECCCCCchhHHHHHHHHHh---CCCeEEecccchhhc-----------------ccccccHHH
Confidence 00000 0268999999999999999999999 578888898877632 23 211 1
Q ss_pred HHHHH-------HHcCCCEEEEEecCCCCC--------------HHHHHHHHHhhhcCeE--------ecCCCc--eeec
Q 003038 723 RFAEA-------VSNNPHRVFLIEDVEQAD--------------YCSQKGFKRAIESGRI--------VTSSGD--EVSL 771 (854)
Q Consensus 723 ~L~ea-------v~~~p~~ViliDEieka~--------------~~v~~~Ll~~le~G~l--------~d~~G~--~v~~ 771 (854)
.|... |.+....|||||||||.. ..||.+||+.+|--.+ +...|+ .||.
T Consensus 275 vi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDT 354 (564)
T KOG0745|consen 275 VIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDT 354 (564)
T ss_pred HHHHHHHHccCCHHHHhcCeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEec
Confidence 12221 334567899999999975 3599999999973222 233454 4577
Q ss_pred CCeEEEEecCCCCCCCCCCCCC
Q 003038 772 GDAIVILSCESFSSRSRACSPP 793 (854)
Q Consensus 772 ~~aIiIlTsn~f~~~s~~~sp~ 793 (854)
+|-.||. +..|.-.-+..+.+
T Consensus 355 tnILFia-sGAF~~Ldk~I~rR 375 (564)
T KOG0745|consen 355 TNILFIA-SGAFVGLDKIISRR 375 (564)
T ss_pred cceEEEe-cccccchHHHHHHh
Confidence 8877777 56676665554444
No 103
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=2.8e-09 Score=123.37 Aligned_cols=157 Identities=14% Similarity=0.208 Sum_probs=109.7
Q ss_pred HHHHHHHHHhhcCcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCC
Q 003038 606 SENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSH 685 (854)
Q Consensus 606 ~e~l~~L~~~L~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~ 685 (854)
.-.|..-...|.+.=.|-+++.+.|.+.|.-++. ... -.--.+.|+||||||||.+||.||+.| +
T Consensus 399 n~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kL--rgs----------~qGkIlCf~GPPGVGKTSI~kSIA~AL---n 463 (906)
T KOG2004|consen 399 NLDLARAKEILDEDHYGMEDVKERILEFIAVGKL--RGS----------VQGKILCFVGPPGVGKTSIAKSIARAL---N 463 (906)
T ss_pred hhhHHHHHHhhcccccchHHHHHHHHHHHHHHhh--ccc----------CCCcEEEEeCCCCCCcccHHHHHHHHh---C
Confidence 3456677788888889999999999988876643 110 111379999999999999999999999 4
Q ss_pred CceEEEccccccCcCCCccccccccccCCCCCC-chH-HHHHHHHHcC--CCEEEEEecCCCCCHHH----HHHHHHhhh
Q 003038 686 NNFVSIALSSFSSTRADSTEDSRNKRSRDEQSC-SYI-ERFAEAVSNN--PHRVFLIEDVEQADYCS----QKGFKRAIE 757 (854)
Q Consensus 686 ~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~-g~~-e~L~eav~~~--p~~ViliDEieka~~~v----~~~Ll~~le 757 (854)
..|.|+......+ .-.++.-+ .-| |.. .++.+++++. .+.|||||||||.-... -.+||..+|
T Consensus 464 RkFfRfSvGG~tD-------vAeIkGHR--RTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLD 534 (906)
T KOG2004|consen 464 RKFFRFSVGGMTD-------VAEIKGHR--RTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLD 534 (906)
T ss_pred CceEEEecccccc-------HHhhcccc--eeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcC
Confidence 6788888776652 11111100 011 111 2567777652 23499999999986533 358888887
Q ss_pred ---cCeEecCC-CceeecCCeEEEEecCCCCCC
Q 003038 758 ---SGRIVTSS-GDEVSLGDAIVILSCESFSSR 786 (854)
Q Consensus 758 ---~G~l~d~~-G~~v~~~~aIiIlTsn~f~~~ 786 (854)
+-.|.|.. .-.+|++.+.||+|.|..+..
T Consensus 535 PEQNanFlDHYLdVp~DLSkVLFicTAN~idtI 567 (906)
T KOG2004|consen 535 PEQNANFLDHYLDVPVDLSKVLFICTANVIDTI 567 (906)
T ss_pred hhhccchhhhccccccchhheEEEEeccccccC
Confidence 45666643 467999999999999987655
No 104
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.93 E-value=5.7e-09 Score=112.53 Aligned_cols=109 Identities=14% Similarity=0.172 Sum_probs=75.5
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCC-CCC-------------------
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDE-QSC------------------- 718 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~-~g~------------------- 718 (854)
.+||.||+|+|||++|++||+.+ ..+|+.++++.-... +.+++. .++
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~l---g~~~~~i~~~~~~~~----------~dllg~~~~~~~~~~~~~~~~~~~~~~~~ 89 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKR---DRPVMLINGDAELTT----------SDLVGSYAGYTRKKVHDQFIHNVVKLEDI 89 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh---CCCEEEEeCCccCCH----------HHHhhhhcccchhhHHHHHHHHhhhhhcc
Confidence 57899999999999999999966 357888888753310 011100 000
Q ss_pred ---chHH-HHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCC----Cceeec-CCeEEEEecCC
Q 003038 719 ---SYIE-RFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSS----GDEVSL-GDAIVILSCES 782 (854)
Q Consensus 719 ---g~~e-~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~----G~~v~~-~~aIiIlTsn~ 782 (854)
.|.+ .|..+.++ ..+++||||+++++++|+.|+++|++|.++-.+ ++.+.. .+..||+|+|.
T Consensus 90 ~~~~~~~g~l~~A~~~--g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~ 160 (262)
T TIGR02640 90 VRQNWVDNRLTLAVRE--GFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNP 160 (262)
T ss_pred cceeecCchHHHHHHc--CCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCC
Confidence 0111 35555543 359999999999999999999999999987543 233322 46679999984
No 105
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=2e-09 Score=119.80 Aligned_cols=136 Identities=16% Similarity=0.195 Sum_probs=85.8
Q ss_pred Ccccc-cHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccc
Q 003038 618 KKVPW-QKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSF 696 (854)
Q Consensus 618 ~~V~G-Q~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~ 696 (854)
.+|+| |+.++..+...+... +-...+||+||+|+||+++|+.+|+.++.....= ..-|..+
T Consensus 5 ~~i~~~q~~~~~~L~~~~~~~-----------------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~-~~~cg~C 66 (329)
T PRK08058 5 EQLTALQPVVVKMLQNSIAKN-----------------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNG-VEPCGTC 66 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHcC-----------------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCC-CCCCCcC
Confidence 45777 999999998887653 3346889999999999999999999998643100 0001111
Q ss_pred cCcCCCccccccccccCCCCC--CchHH--HHHHHHHc----CCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCce
Q 003038 697 SSTRADSTEDSRNKRSRDEQS--CSYIE--RFAEAVSN----NPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDE 768 (854)
Q Consensus 697 ~~~~~~s~e~~~~~rl~~~~g--~g~~e--~L~eav~~----~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~ 768 (854)
..+.......|.--..+.+.+ .+.++ .+.+.+.. .+++||+|||+|+++...+|.|++.||+-
T Consensus 67 ~~c~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEP--------- 137 (329)
T PRK08058 67 TNCKRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEP--------- 137 (329)
T ss_pred HHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCC---------
Confidence 100000001111001111112 13333 34455543 34789999999999999999999999972
Q ss_pred eecCCeEEEEecCC
Q 003038 769 VSLGDAIVILSCES 782 (854)
Q Consensus 769 v~~~~aIiIlTsn~ 782 (854)
-.+++|||+|+.
T Consensus 138 --p~~~~~Il~t~~ 149 (329)
T PRK08058 138 --SGGTTAILLTEN 149 (329)
T ss_pred --CCCceEEEEeCC
Confidence 257789998863
No 106
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=2.9e-09 Score=117.27 Aligned_cols=132 Identities=12% Similarity=0.157 Sum_probs=86.2
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccC
Q 003038 619 KVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSS 698 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~ 698 (854)
-.+||..+...+..++.+.|. .+.+||.||.|+||+.+|+.+|+.++..... .+..+..
T Consensus 5 ~yPW~~~~~~~l~~~~~~~rl-----------------~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~----~~~~c~~ 63 (319)
T PRK08769 5 FSPWQQRAYDQTVAALDAGRL-----------------GHGLLICGPEGLGKRAVALALAEHVLASGPD----PAAAQRT 63 (319)
T ss_pred ccccHHHHHHHHHHHHHcCCc-----------------ceeEeeECCCCCCHHHHHHHHHHHHhCCCCC----CCCcchH
Confidence 359999999999998876432 4589999999999999999999999864311 0100000
Q ss_pred cCCCccccccccccC--CCC--C------CchHH--HHHHHHHcCC----CEEEEEecCCCCCHHHHHHHHHhhhcCeEe
Q 003038 699 TRADSTEDSRNKRSR--DEQ--S------CSYIE--RFAEAVSNNP----HRVFLIEDVEQADYCSQKGFKRAIESGRIV 762 (854)
Q Consensus 699 ~~~~s~e~~~~~rl~--~~~--g------~g~~e--~L~eav~~~p----~~ViliDEieka~~~v~~~Ll~~le~G~l~ 762 (854)
+.-.....|.--..+ .|. + .+.++ .+.+.+...| ++||+||++|+++....|+||+.||+
T Consensus 64 c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE---- 139 (319)
T PRK08769 64 RQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEE---- 139 (319)
T ss_pred HHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhC----
Confidence 000000111100111 111 1 12323 4555555555 58999999999999999999999997
Q ss_pred cCCCceeecCCeEEEEecCC
Q 003038 763 TSSGDEVSLGDAIVILSCES 782 (854)
Q Consensus 763 d~~G~~v~~~~aIiIlTsn~ 782 (854)
.-.+++|||+|+.
T Consensus 140 -------Pp~~~~fiL~~~~ 152 (319)
T PRK08769 140 -------PSPGRYLWLISAQ 152 (319)
T ss_pred -------CCCCCeEEEEECC
Confidence 2357889998864
No 107
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.93 E-value=3.6e-09 Score=121.11 Aligned_cols=141 Identities=9% Similarity=0.061 Sum_probs=95.6
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeC
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLG 305 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfid 305 (854)
..++++|+||||||||++|+++|..+ +..++.+..+.|...|.|+.+..+++++..++.. .|+|||||
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el----------~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~--~P~ILfID 283 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANET----------SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEN--APSIVFID 283 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh----------CCCEEEEecchhhhhhcchHHHHHHHHHHHHHhC--CCcEEeHH
Confidence 45689999999999999999999874 3467888888888889999999999999999875 79999999
Q ss_pred ccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchhhhhcc-CCCCCCCch
Q 003038 306 DLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLETLWSL-HPLTIPAGS 383 (854)
Q Consensus 306 el~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~-~~v~i~~~s 383 (854)
||+.+ ..+.....+. ...+....+++-+.+......+.+.+|+||+.-+. .||+|-|-.|| ..|.|+.|+
T Consensus 284 EID~l~~kR~~~~sgg---~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~-----LDpaLlRpGRfd~~I~~~~Pd 355 (438)
T PTZ00361 284 EIDAIGTKRYDATSGG---EKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIES-----LDPALIRPGRIDRKIEFPNPD 355 (438)
T ss_pred HHHHHhccCCCCCCcc---cHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHH-----hhHHhccCCeeEEEEEeCCCC
Confidence 99999 5432211110 01111222333333321111235999999986442 47888764444 456777666
Q ss_pred HHH
Q 003038 384 LSL 386 (854)
Q Consensus 384 l~~ 386 (854)
...
T Consensus 356 ~~~ 358 (438)
T PTZ00361 356 EKT 358 (438)
T ss_pred HHH
Confidence 443
No 108
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.93 E-value=6.7e-09 Score=120.94 Aligned_cols=132 Identities=18% Similarity=0.177 Sum_probs=86.6
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCc----e-EEEc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNN----F-VSIA 692 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~----~-i~id 692 (854)
..|+||++++..+.+++... +..+.+||+||+|+|||++|+.+|+.+++.... + .+.+
T Consensus 16 ~diiGq~~i~~~L~~~i~~~-----------------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~n 78 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQ-----------------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCEN 78 (486)
T ss_pred HHccChHHHHHHHHHHHHcC-----------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHH
Confidence 45799999999998888653 234578999999999999999999999742110 0 0011
Q ss_pred cccccCcCCCccccc-cccccCCC-CCCchHH--HHHHHHHcCC----CEEEEEecCCCCCHHHHHHHHHhhhcCeEecC
Q 003038 693 LSSFSSTRADSTEDS-RNKRSRDE-QSCSYIE--RFAEAVSNNP----HRVFLIEDVEQADYCSQKGFKRAIESGRIVTS 764 (854)
Q Consensus 693 ~s~~~~~~~~s~e~~-~~~rl~~~-~g~g~~e--~L~eav~~~p----~~ViliDEieka~~~v~~~Ll~~le~G~l~d~ 764 (854)
|..+.. ..+ .+.. +.+ ...|..+ .+.+.+...| +.||+|||+|+++...++.|++.|++.
T Consensus 79 c~~i~~------g~~~d~~e-idaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEep----- 146 (486)
T PRK14953 79 CVEIDK------GSFPDLIE-IDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEP----- 146 (486)
T ss_pred HHHHhc------CCCCcEEE-EeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcC-----
Confidence 111110 000 0000 111 1124443 5667776655 579999999999999999999999963
Q ss_pred CCceeecCCeEEEEecCCCC
Q 003038 765 SGDEVSLGDAIVILSCESFS 784 (854)
Q Consensus 765 ~G~~v~~~~aIiIlTsn~f~ 784 (854)
-.+++|||+++..+
T Consensus 147 ------p~~~v~Il~tt~~~ 160 (486)
T PRK14953 147 ------PPRTIFILCTTEYD 160 (486)
T ss_pred ------CCCeEEEEEECCHH
Confidence 23567888776443
No 109
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=98.92 E-value=6.8e-09 Score=122.46 Aligned_cols=121 Identities=12% Similarity=0.146 Sum_probs=80.1
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHH-------hCCCCceEEE
Q 003038 619 KVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLV-------FGSHNNFVSI 691 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~l-------fg~~~~~i~i 691 (854)
.++||++++..+..++.. + . ...+||+||+|+|||.+|+++.+.. |.....|+.+
T Consensus 66 ~iiGqs~~i~~l~~al~~-------~----------~-~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~i 127 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCG-------P----------N-PQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEI 127 (531)
T ss_pred HeeCcHHHHHHHHHHHhC-------C----------C-CceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEE
Confidence 489999999888765321 1 1 2367999999999999999998753 3335689999
Q ss_pred ccccccCcCCCccccccccccCC---CC--------CC-chHHHHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcC
Q 003038 692 ALSSFSSTRADSTEDSRNKRSRD---EQ--------SC-SYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESG 759 (854)
Q Consensus 692 d~s~~~~~~~~s~e~~~~~rl~~---~~--------g~-g~~e~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G 759 (854)
|++..... ++.....++. .+ +. |+.+...+++.+....++|||||+++++..|+.|+++|+++
T Consensus 128 d~~~~~~~-----~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~ 202 (531)
T TIGR02902 128 DATTARFD-----ERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDR 202 (531)
T ss_pred ccccccCC-----ccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhC
Confidence 98632100 1000000110 00 00 11111233556677899999999999999999999999998
Q ss_pred eEe
Q 003038 760 RIV 762 (854)
Q Consensus 760 ~l~ 762 (854)
++.
T Consensus 203 ~~~ 205 (531)
T TIGR02902 203 KVF 205 (531)
T ss_pred eee
Confidence 764
No 110
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.92 E-value=6.9e-09 Score=122.68 Aligned_cols=136 Identities=17% Similarity=0.184 Sum_probs=85.5
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..|+||++++..+...+... +....+||+||+|+|||++|++||+.+++.... -..-|..+.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~-----------------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~-~~~pC~~C~ 77 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESN-----------------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGP-TPMPCGECS 77 (563)
T ss_pred HHccCcHHHHHHHHHHHHcC-----------------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCC-CCCCCccch
Confidence 46899999999998888753 224579999999999999999999999753210 000011111
Q ss_pred CcCCCccccc-cccccCCCCC-CchHH--HHHHHHHc----CCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCcee
Q 003038 698 STRADSTEDS-RNKRSRDEQS-CSYIE--RFAEAVSN----NPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEV 769 (854)
Q Consensus 698 ~~~~~s~e~~-~~~rl~~~~g-~g~~e--~L~eav~~----~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v 769 (854)
.+.......+ .+.. +.+.. .+..+ .+.+.+.. .+++||+|||+|+++...+|.|++.+|+.
T Consensus 78 ~C~~i~~~~~~dv~~-idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEep---------- 146 (563)
T PRK06647 78 SCKSIDNDNSLDVIE-IDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEP---------- 146 (563)
T ss_pred HHHHHHcCCCCCeEE-ecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccC----------
Confidence 0000000000 0000 11111 13332 34333333 45789999999999999999999999962
Q ss_pred ecCCeEEEEecCCC
Q 003038 770 SLGDAIVILSCESF 783 (854)
Q Consensus 770 ~~~~aIiIlTsn~f 783 (854)
-.+++|||+|+..
T Consensus 147 -p~~~vfI~~tte~ 159 (563)
T PRK06647 147 -PPYIVFIFATTEV 159 (563)
T ss_pred -CCCEEEEEecCCh
Confidence 2477899987654
No 111
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.91 E-value=3.8e-09 Score=116.30 Aligned_cols=147 Identities=11% Similarity=0.116 Sum_probs=95.1
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccC
Q 003038 619 KVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSS 698 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~ 698 (854)
-.|||..+...+..++.+.| -.+.+||.||.|+||+.+|+.+|+.++.....- -.|..+.+
T Consensus 4 ~yPWl~~~~~~l~~~~~~~r-----------------l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~--~~Cg~C~s 64 (319)
T PRK06090 4 DYPWLVPVWQNWKAGLDAGR-----------------IPGALLLQSDEGLGVESLVELFSRALLCQNYQS--EACGFCHS 64 (319)
T ss_pred CcccHHHHHHHHHHHHHcCC-----------------cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCC--CCCCCCHH
Confidence 45999999999998887643 356899999999999999999999997643210 11222211
Q ss_pred cCCCccccccccccCCCC--CC--chHH--HHHHHHHcCC----CEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCce
Q 003038 699 TRADSTEDSRNKRSRDEQ--SC--SYIE--RFAEAVSNNP----HRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDE 768 (854)
Q Consensus 699 ~~~~s~e~~~~~rl~~~~--g~--g~~e--~L~eav~~~p----~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~ 768 (854)
++......|.--..+.|. +. +.++ .+.+.+...| ++|++||++|+++...+|+||+.+|+
T Consensus 65 C~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE---------- 134 (319)
T PRK06090 65 CELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEE---------- 134 (319)
T ss_pred HHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcC----------
Confidence 110000112111112121 11 4433 4555554444 79999999999999999999999997
Q ss_pred eecCCeEEEEecCCCC-CCCCCCCCCcc
Q 003038 769 VSLGDAIVILSCESFS-SRSRACSPPTK 795 (854)
Q Consensus 769 v~~~~aIiIlTsn~f~-~~s~~~sp~~~ 795 (854)
.-.+++|||+|+.-+ -..+.-|.|++
T Consensus 135 -Pp~~t~fiL~t~~~~~lLpTI~SRCq~ 161 (319)
T PRK06090 135 -PAPNCLFLLVTHNQKRLLPTIVSRCQQ 161 (319)
T ss_pred -CCCCeEEEEEECChhhChHHHHhccee
Confidence 336788999886533 33444566644
No 112
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.91 E-value=7.1e-09 Score=117.10 Aligned_cols=155 Identities=12% Similarity=0.097 Sum_probs=104.5
Q ss_pred cHHHHHHHHHHhhcc-------------CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccc
Q 003038 211 RNEDVMYVIENLMSK-------------RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMN 277 (854)
Q Consensus 211 r~~ei~~v~~~L~r~-------------~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~ 277 (854)
.++.++++.+.+... ..++++|+||||||||++|+++|... +..++.+..+.+...|
T Consensus 127 l~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l----------~~~~~~v~~~~l~~~~ 196 (364)
T TIGR01242 127 LEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET----------NATFIRVVGSELVRKY 196 (364)
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC----------CCCEEecchHHHHHHh
Confidence 677777777665321 24569999999999999999999874 3467777777777778
Q ss_pred hHHHHHHHHHHHHHHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcc---cCCCCceEEEEEec
Q 003038 278 RVEVEQRVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVC---GIGENARFWLMGIA 353 (854)
Q Consensus 278 rge~E~rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~---~~~g~g~l~lIgat 353 (854)
.|+.+..++.++..++.. .|+||||||++.+ ..+.....+. . + .....+..++. .....+.+.+|++|
T Consensus 197 ~g~~~~~i~~~f~~a~~~--~p~il~iDEiD~l~~~~~~~~~~~---~-~--~~~~~l~~ll~~ld~~~~~~~v~vI~tt 268 (364)
T TIGR01242 197 IGEGARLVREIFELAKEK--APSIIFIDEIDAIAAKRTDSGTSG---D-R--EVQRTLMQLLAELDGFDPRGNVKVIAAT 268 (364)
T ss_pred hhHHHHHHHHHHHHHHhc--CCcEEEhhhhhhhccccccCCCCc---c-H--HHHHHHHHHHHHhhCCCCCCCEEEEEec
Confidence 999999999999988865 6899999999999 4332110000 0 0 11223334441 11112369999999
Q ss_pred CHHHHHHhhccCCchhhhhccC-CCCCCCchHHHHh
Q 003038 354 TFQSYMRCKSGHPSLETLWSLH-PLTIPAGSLSLSL 388 (854)
Q Consensus 354 T~~ey~k~~~~~pale~~~~~~-~v~i~~~sl~~al 388 (854)
+..+ ..+|++-|.+||. .|.|+.|+.....
T Consensus 269 n~~~-----~ld~al~r~grfd~~i~v~~P~~~~r~ 299 (364)
T TIGR01242 269 NRPD-----ILDPALLRPGRFDRIIEVPLPDFEGRL 299 (364)
T ss_pred CChh-----hCChhhcCcccCceEEEeCCcCHHHHH
Confidence 8654 3688887766663 4667766655433
No 113
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.91 E-value=6.7e-10 Score=114.85 Aligned_cols=86 Identities=13% Similarity=0.176 Sum_probs=52.0
Q ss_pred CCCC-cHHHHHHHHHHhhcc---C---cCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchH
Q 003038 207 LDPI-RNEDVMYVIENLMSK---R---KRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRV 279 (854)
Q Consensus 207 ldpv-r~~ei~~v~~~L~r~---~---k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rg 279 (854)
||-+ .++++..-+.++.+. + -.+++|+||||+|||++++-+|..+ ++.|..++...+.
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~----------~~~~~~~sg~~i~----- 87 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL----------GVNFKITSGPAIE----- 87 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC----------T--EEEEECCC-------
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc----------CCCeEeccchhhh-----
Confidence 4444 777777777776442 1 1368999999999999999999874 4566665543332
Q ss_pred HHHHHHHHHHHHHHhhhCCCeEEEeCccccc-cc
Q 003038 280 EVEQRVEEIKNLVRSCLGRGIVLNLGDLEWA-EF 312 (854)
Q Consensus 280 e~E~rl~~l~~~~~~~~~~~~ILfidel~~l-~~ 312 (854)
+..++...+.+. +.+.||||||||.+ ..
T Consensus 88 ----k~~dl~~il~~l-~~~~ILFIDEIHRlnk~ 116 (233)
T PF05496_consen 88 ----KAGDLAAILTNL-KEGDILFIDEIHRLNKA 116 (233)
T ss_dssp ----SCHHHHHHHHT---TT-EEEECTCCC--HH
T ss_pred ----hHHHHHHHHHhc-CCCcEEEEechhhccHH
Confidence 122233333333 45789999999999 54
No 114
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.91 E-value=5.5e-09 Score=123.87 Aligned_cols=143 Identities=13% Similarity=0.184 Sum_probs=100.5
Q ss_pred cCcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccc
Q 003038 617 EKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSF 696 (854)
Q Consensus 617 ~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~ 696 (854)
...++|++.++..+...+.+.. +...++|+.|++|+||+.+|++|.+.......+|+.+||..+
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a----------------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~ 258 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVA----------------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAAL 258 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHh----------------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCC
Confidence 4578999999999888888753 223578999999999999999999988777889999999987
Q ss_pred cCcCCCccccccccccCC-CCC-C-chHHHHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeecCC
Q 003038 697 SSTRADSTEDSRNKRSRD-EQS-C-SYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGD 773 (854)
Q Consensus 697 ~~~~~~s~e~~~~~rl~~-~~g-~-g~~e~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~~~ 773 (854)
. +....+.+.+ ..| + |....-.+.+......++|||||+++++.+|..|+++|++|.++...|...--.+
T Consensus 259 ~-------~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~ 331 (534)
T TIGR01817 259 S-------ETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVD 331 (534)
T ss_pred C-------HHHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeec
Confidence 6 2211111111 000 0 1000000112233467999999999999999999999999998764443333346
Q ss_pred eEEEEecCC
Q 003038 774 AIVILSCES 782 (854)
Q Consensus 774 aIiIlTsn~ 782 (854)
+.||+||+.
T Consensus 332 ~riI~~s~~ 340 (534)
T TIGR01817 332 VRLVAATNR 340 (534)
T ss_pred EEEEEeCCC
Confidence 788888763
No 115
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.90 E-value=3.7e-09 Score=100.28 Aligned_cols=109 Identities=17% Similarity=0.277 Sum_probs=63.5
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccc-ccCcCCCcc-----ccccccccCCCCCCchHHHHHHHHHcCC
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSS-FSSTRADST-----EDSRNKRSRDEQSCSYIERFAEAVSNNP 732 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~-~~~~~~~s~-----e~~~~~rl~~~~g~g~~e~L~eav~~~p 732 (854)
++|+.|++|+|||.+|++||+.+- ..|.||.++. ... .+..+ .+....++..+|.+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~---~~f~RIq~tpdllP-sDi~G~~v~~~~~~~f~~~~GPif-------------- 62 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLG---LSFKRIQFTPDLLP-SDILGFPVYDQETGEFEFRPGPIF-------------- 62 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT-----EEEEE--TT--H-HHHHEEEEEETTTTEEEEEE-TT---------------
T ss_pred CEeeECCCccHHHHHHHHHHHHcC---CceeEEEecCCCCc-ccceeeeeeccCCCeeEeecChhh--------------
Confidence 479999999999999999999983 4677887652 210 00000 00000000111111
Q ss_pred CEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeecCCeEEEE-ecCCCCCC
Q 003038 733 HRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDAIVIL-SCESFSSR 786 (854)
Q Consensus 733 ~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIiIl-Tsn~f~~~ 786 (854)
..|+|+|||.+++|.+|.+|+++|++++++. .|.+..+.+..+|+ |-|..+..
T Consensus 63 ~~ill~DEiNrappktQsAlLeam~Er~Vt~-~g~~~~lp~pf~ViATqNp~e~~ 116 (131)
T PF07726_consen 63 TNILLADEINRAPPKTQSALLEAMEERQVTI-DGQTYPLPDPFFVIATQNPVEQE 116 (131)
T ss_dssp SSEEEEETGGGS-HHHHHHHHHHHHHSEEEE-TTEEEE--SS-EEEEEE-TT--S
T ss_pred hceeeecccccCCHHHHHHHHHHHHcCeEEe-CCEEEECCCcEEEEEecCccccC
Confidence 3599999999999999999999999999995 57889998866655 66865443
No 116
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.90 E-value=3.1e-09 Score=118.15 Aligned_cols=148 Identities=10% Similarity=0.109 Sum_probs=95.8
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccC
Q 003038 619 KVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSS 698 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~ 698 (854)
-.|||..+...+...+.+.| -.+.+||.||+|+||+.+|+++|+.++.....- .-.|..+.+
T Consensus 3 ~yPWl~~~~~~l~~~~~~~r-----------------l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~-~~~Cg~C~s 64 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGR-----------------GHHALLIQALPGMGDDALIYALSRWLMCQQPQG-HKSCGHCRG 64 (334)
T ss_pred CCCCChHHHHHHHHHHHcCC-----------------cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCC-CCCCCCCHH
Confidence 35999999999998887643 356899999999999999999999998642110 001222211
Q ss_pred cCCCccccccccccCCCC----CCchHH--HHHHHHHcC----CCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCce
Q 003038 699 TRADSTEDSRNKRSRDEQ----SCSYIE--RFAEAVSNN----PHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDE 768 (854)
Q Consensus 699 ~~~~s~e~~~~~rl~~~~----g~g~~e--~L~eav~~~----p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~ 768 (854)
+.......|.--..+.|. ..+.++ .+.+.+... .++|++||++|+|+....|+||+.||+-
T Consensus 65 C~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP--------- 135 (334)
T PRK07993 65 CQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEP--------- 135 (334)
T ss_pred HHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCC---------
Confidence 100000111111112121 124444 456655544 4789999999999999999999999972
Q ss_pred eecCCeEEEEecCCCCC-CCCCCCCCcc
Q 003038 769 VSLGDAIVILSCESFSS-RSRACSPPTK 795 (854)
Q Consensus 769 v~~~~aIiIlTsn~f~~-~s~~~sp~~~ 795 (854)
-.+++|||+|+.-+. .++..|.|+.
T Consensus 136 --p~~t~fiL~t~~~~~lLpTIrSRCq~ 161 (334)
T PRK07993 136 --PENTWFFLACREPARLLATLRSRCRL 161 (334)
T ss_pred --CCCeEEEEEECChhhChHHHHhcccc
Confidence 357889998865433 3344666654
No 117
>CHL00206 ycf2 Ycf2; Provisional
Probab=98.89 E-value=3.4e-09 Score=134.00 Aligned_cols=128 Identities=9% Similarity=0.033 Sum_probs=88.9
Q ss_pred cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccc---------------------------
Q 003038 225 KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMN--------------------------- 277 (854)
Q Consensus 225 ~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~--------------------------- 277 (854)
+-.+.++|+||||||||.+|++||.. .++.|++++++.|+.++
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~e----------s~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~ 1697 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATN----------SYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDL 1697 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHh----------cCCceEEEEHHHHhhccccccccccccccccccccccccccccc
Confidence 46779999999999999999999976 47789999988887532
Q ss_pred --------------hHHHH--HHHHHHHHHHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhccc
Q 003038 278 --------------RVEVE--QRVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG 340 (854)
Q Consensus 278 --------------rge~E--~rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 340 (854)
.|+-+ .|++.+++.|++. .||||||||||.+ ...... .....+.+.|..
T Consensus 1698 ~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~--SPCIIFIDEIDaL~~~ds~~------------ltL~qLLneLDg 1763 (2281)
T CHL00206 1698 DTELLTMMNALTMDMMPKIDRFYITLQFELAKAM--SPCIIWIPNIHDLNVNESNY------------LSLGLLVNSLSR 1763 (2281)
T ss_pred chhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHC--CCeEEEEEchhhcCCCccce------------ehHHHHHHHhcc
Confidence 11222 3589999999986 7999999999999 432110 012222233321
Q ss_pred C---CCCceEEEEEecCHHHHHHhhccCCchhhhhcc-CCCCCCC
Q 003038 341 I---GENARFWLMGIATFQSYMRCKSGHPSLETLWSL-HPLTIPA 381 (854)
Q Consensus 341 ~---~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~-~~v~i~~ 381 (854)
. .....|.|||||+... ..||||-|-=|| +.|.|+-
T Consensus 1764 ~~~~~s~~~VIVIAATNRPD-----~LDPALLRPGRFDR~I~Ir~ 1803 (2281)
T CHL00206 1764 DCERCSTRNILVIASTHIPQ-----KVDPALIAPNKLNTCIKIRR 1803 (2281)
T ss_pred ccccCCCCCEEEEEeCCCcc-----cCCHhHcCCCCCCeEEEeCC
Confidence 1 1122599999999765 589999885556 3444543
No 118
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.89 E-value=9.6e-09 Score=122.70 Aligned_cols=140 Identities=19% Similarity=0.185 Sum_probs=86.5
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..|+||++++..|.+++...+ -...+||+||+|+|||++|+.||+.++.....-.--.|..+.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----------------i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~ 78 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----------------VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCE 78 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----------------CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCH
Confidence 468999999999988887532 234789999999999999999999996422100000011110
Q ss_pred CcCCCcccccc-ccccCCCCC-CchHH--HHHHHHHcC----CCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCcee
Q 003038 698 STRADSTEDSR-NKRSRDEQS-CSYIE--RFAEAVSNN----PHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEV 769 (854)
Q Consensus 698 ~~~~~s~e~~~-~~rl~~~~g-~g~~e--~L~eav~~~----p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v 769 (854)
.+.......|. +-. +.+.. .+..+ .+.+.+... .++||+|||+|+++...++.|+++|++.
T Consensus 79 ~c~~i~~~~~~d~~~-i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEep---------- 147 (585)
T PRK14950 79 MCRAIAEGSAVDVIE-MDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEP---------- 147 (585)
T ss_pred HHHHHhcCCCCeEEE-EeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcC----------
Confidence 00000000000 000 11111 23333 455555544 4689999999999999999999999973
Q ss_pred ecCCeEEEEecCCCCCC
Q 003038 770 SLGDAIVILSCESFSSR 786 (854)
Q Consensus 770 ~~~~aIiIlTsn~f~~~ 786 (854)
-.+++|||+++..+..
T Consensus 148 -p~~tv~Il~t~~~~kl 163 (585)
T PRK14950 148 -PPHAIFILATTEVHKV 163 (585)
T ss_pred -CCCeEEEEEeCChhhh
Confidence 1467888888765433
No 119
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.88 E-value=1.5e-08 Score=113.68 Aligned_cols=136 Identities=16% Similarity=0.180 Sum_probs=84.5
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..|+||++++..+...+... +....+||+||+|+|||++|+.||+.+++....- .-.+..+.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~-----------------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~-~~~c~~c~ 75 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNG-----------------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPD-GEPCNECE 75 (355)
T ss_pred hhccCcHHHHHHHHHHHHcC-----------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-CCCCCCCH
Confidence 46799999999999887642 2345899999999999999999999997542100 00111110
Q ss_pred CcCCCccccc-cccccCCCCCC-chH--HHHHHHHHcCC----CEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCcee
Q 003038 698 STRADSTEDS-RNKRSRDEQSC-SYI--ERFAEAVSNNP----HRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEV 769 (854)
Q Consensus 698 ~~~~~s~e~~-~~~rl~~~~g~-g~~--e~L~eav~~~p----~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v 769 (854)
++.......+ .+.. +.+.+. +.. ..+.+.+...| ++||+|||+|+++...++.|++.+++.
T Consensus 76 ~c~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~---------- 144 (355)
T TIGR02397 76 SCKEINSGSSLDVIE-IDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEP---------- 144 (355)
T ss_pred HHHHHhcCCCCCEEE-eeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCC----------
Confidence 0000000000 0000 111111 221 24555555544 689999999999999999999999862
Q ss_pred ecCCeEEEEecCCC
Q 003038 770 SLGDAIVILSCESF 783 (854)
Q Consensus 770 ~~~~aIiIlTsn~f 783 (854)
-.+++||++++..
T Consensus 145 -~~~~~lIl~~~~~ 157 (355)
T TIGR02397 145 -PEHVVFILATTEP 157 (355)
T ss_pred -ccceeEEEEeCCH
Confidence 2467788887653
No 120
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.88 E-value=6e-09 Score=115.93 Aligned_cols=139 Identities=14% Similarity=0.171 Sum_probs=97.5
Q ss_pred ccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCc
Q 003038 620 VPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSST 699 (854)
Q Consensus 620 V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~ 699 (854)
++|+..++..+...+.+.-. ...++|+.|++|+||+.+|++|...-.....+|+.+||+...+
T Consensus 1 liG~S~~m~~~~~~~~~~a~----------------~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~- 63 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----------------LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSE- 63 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----------------CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCCh-
Confidence 57899888888888877532 2347899999999999999999887766678999999997652
Q ss_pred CCCccccccccccCC-CCC-C-chHHHHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeecCCeEE
Q 003038 700 RADSTEDSRNKRSRD-EQS-C-SYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDAIV 776 (854)
Q Consensus 700 ~~~s~e~~~~~rl~~-~~g-~-g~~e~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIi 776 (854)
...-+.+.+ ..| + |....-.+.+......++|||||+.+++.+|..|+++|++|.+..-.|...--.++.|
T Consensus 64 ------~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~Ri 137 (329)
T TIGR02974 64 ------NLLDSELFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRL 137 (329)
T ss_pred ------HHHHHHHhccccccccCcccccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEE
Confidence 111111111 000 0 1100011123344578999999999999999999999999998754444444467889
Q ss_pred EEecC
Q 003038 777 ILSCE 781 (854)
Q Consensus 777 IlTsn 781 (854)
|++|+
T Consensus 138 I~at~ 142 (329)
T TIGR02974 138 VCATN 142 (329)
T ss_pred EEech
Confidence 99886
No 121
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=3.8e-09 Score=115.06 Aligned_cols=113 Identities=10% Similarity=0.158 Sum_probs=86.9
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeC
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLG 305 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfid 305 (854)
.-++++|+||||+|||-+++++|.+ .++.|+.++++.+.+.+.||.++-++.+|..+.+- .|+|+|||
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Ake----------aga~fInv~~s~lt~KWfgE~eKlv~AvFslAsKl--~P~iIFID 193 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKE----------AGANFINVSVSNLTSKWFGEAQKLVKAVFSLASKL--QPSIIFID 193 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHH----------cCCCcceeeccccchhhHHHHHHHHHHHHhhhhhc--Ccceeehh
Confidence 6789999999999999999999987 68899999999999998899999999999999987 79999999
Q ss_pred ccccc-cccccccccccccchh-hhHHHHHHHhhcccCCCCceEEEEEecCH
Q 003038 306 DLEWA-EFRASSSEQVRGYYCS-IEHIIMEIGKLVCGIGENARFWLMGIATF 355 (854)
Q Consensus 306 el~~l-~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~~g~g~l~lIgatT~ 355 (854)
|+..+ +.+++..+. .|. |..-.|-...-|.. .++-+|-++|||+.
T Consensus 194 Evds~L~~R~s~dHE----a~a~mK~eFM~~WDGl~s-~~~~rVlVlgATNR 240 (386)
T KOG0737|consen 194 EVDSFLGQRRSTDHE----ATAMMKNEFMALWDGLSS-KDSERVLVLGATNR 240 (386)
T ss_pred hHHHHHhhcccchHH----HHHHHHHHHHHHhccccC-CCCceEEEEeCCCC
Confidence 99999 777433221 222 11222222333321 12226999999973
No 122
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.87 E-value=7e-09 Score=98.60 Aligned_cols=101 Identities=19% Similarity=0.225 Sum_probs=70.7
Q ss_pred EEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCC-CEEEEE
Q 003038 660 LFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNP-HRVFLI 738 (854)
Q Consensus 660 lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p-~~Vili 738 (854)
+||+||+|+|||++|+.+|+.+ ..+++.+++++... ... .........+...+.... .+||+|
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~~~~-------~~~------~~~~~~i~~~~~~~~~~~~~~vl~i 64 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDGSELIS-------SYA------GDSEQKIRDFFKKAKKSAKPCVLFI 64 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TSEEEEEETTHHHT-------SST------THHHHHHHHHHHHHHHTSTSEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhc---cccccccccccccc-------ccc------cccccccccccccccccccceeeee
Confidence 5899999999999999999998 46789999886651 100 000011123444444454 699999
Q ss_pred ecCCCCCHHH-----------HHHHHHhhhcCeEecCCCceeecCCeEEEEecCCCC
Q 003038 739 EDVEQADYCS-----------QKGFKRAIESGRIVTSSGDEVSLGDAIVILSCESFS 784 (854)
Q Consensus 739 DEieka~~~v-----------~~~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn~f~ 784 (854)
||+|++-+.. .+.|+..|++..-. -++.+||+|||..+
T Consensus 65 De~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~--------~~~~~vI~ttn~~~ 113 (132)
T PF00004_consen 65 DEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSK--------NSRVIVIATTNSPD 113 (132)
T ss_dssp ETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTT--------SSSEEEEEEESSGG
T ss_pred ccchhcccccccccccccccccceeeecccccccc--------cccceeEEeeCChh
Confidence 9999998776 88888888853211 35689999998643
No 123
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.87 E-value=5.2e-09 Score=116.14 Aligned_cols=132 Identities=16% Similarity=0.211 Sum_probs=81.9
Q ss_pred ccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCc
Q 003038 620 VPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSST 699 (854)
Q Consensus 620 V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~ 699 (854)
.|||......+... . |-.+.+||+||+|+||+.+|+.+|+.++..... ---.|..+.++
T Consensus 5 yPWl~~~~~~~~~~---~-----------------r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~-~~~~Cg~C~sC 63 (328)
T PRK05707 5 YPWQQSLWQQLAGR---G-----------------RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQ-GGGACGSCKGC 63 (328)
T ss_pred CCCcHHHHHHHHHC---C-----------------CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCC-CCCCCCCCHHH
Confidence 58999777776432 1 335689999999999999999999999754211 00011111111
Q ss_pred CCCccccccccccCCCC----CCchHH--HHHHHHHcC----CCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCcee
Q 003038 700 RADSTEDSRNKRSRDEQ----SCSYIE--RFAEAVSNN----PHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEV 769 (854)
Q Consensus 700 ~~~s~e~~~~~rl~~~~----g~g~~e--~L~eav~~~----p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v 769 (854)
+......|.--..+.+. ..+.++ .+.+.+... +++|++||++|+++...+|.|++.||+-
T Consensus 64 ~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEP---------- 133 (328)
T PRK05707 64 QLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEP---------- 133 (328)
T ss_pred HHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCC----------
Confidence 00000111100111111 124443 455555544 4789999999999999999999999972
Q ss_pred ecCCeEEEEecCCC
Q 003038 770 SLGDAIVILSCESF 783 (854)
Q Consensus 770 ~~~~aIiIlTsn~f 783 (854)
-.+++|||+|+.-
T Consensus 134 -p~~~~fiL~t~~~ 146 (328)
T PRK05707 134 -SGDTVLLLISHQP 146 (328)
T ss_pred -CCCeEEEEEECCh
Confidence 2577899988654
No 124
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.87 E-value=1.4e-08 Score=121.39 Aligned_cols=137 Identities=12% Similarity=0.128 Sum_probs=84.6
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceE-EEccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFV-SIALSSF 696 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i-~id~s~~ 696 (854)
..|+||++++..|..++...|. ...+||+||+|+|||.+|++||+.+++....-. .-.|..+
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl-----------------~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C 78 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRI-----------------APAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKC 78 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCC-----------------CceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCccc
Confidence 4689999999999888875321 247999999999999999999999976321000 0001110
Q ss_pred cCcCCCcccccc-ccccCCCCCCchHH--HHHHHHHc----CCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCcee
Q 003038 697 SSTRADSTEDSR-NKRSRDEQSCSYIE--RFAEAVSN----NPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEV 769 (854)
Q Consensus 697 ~~~~~~s~e~~~-~~rl~~~~g~g~~e--~L~eav~~----~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v 769 (854)
..+.......|. +-.+-.....+..+ .+.+.+.. .+++||+|||+|+++...++.|++.||+-
T Consensus 79 ~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEeP---------- 148 (620)
T PRK14948 79 ELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEP---------- 148 (620)
T ss_pred HHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcC----------
Confidence 000000000010 00000111113332 34444443 45789999999999999999999999952
Q ss_pred ecCCeEEEEecCC
Q 003038 770 SLGDAIVILSCES 782 (854)
Q Consensus 770 ~~~~aIiIlTsn~ 782 (854)
-.+++|||+|+.
T Consensus 149 -p~~tvfIL~t~~ 160 (620)
T PRK14948 149 -PPRVVFVLATTD 160 (620)
T ss_pred -CcCeEEEEEeCC
Confidence 246788988764
No 125
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.83 E-value=9.8e-09 Score=106.64 Aligned_cols=117 Identities=9% Similarity=0.064 Sum_probs=79.9
Q ss_pred HhhcCcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcc
Q 003038 614 NALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIAL 693 (854)
Q Consensus 614 ~~L~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~ 693 (854)
+.-...|+||++|...- +.|... +.+|.+.. ...+-.+||+||+|+|||.|||+||... ..+|+.+..
T Consensus 117 ~it~ddViGqEeAK~kc-rli~~y---LenPe~Fg-----~WAPknVLFyGppGTGKTm~Akalane~---kvp~l~vka 184 (368)
T COG1223 117 DITLDDVIGQEEAKRKC-RLIMEY---LENPERFG-----DWAPKNVLFYGPPGTGKTMMAKALANEA---KVPLLLVKA 184 (368)
T ss_pred cccHhhhhchHHHHHHH-HHHHHH---hhChHHhc-----ccCcceeEEECCCCccHHHHHHHHhccc---CCceEEech
Confidence 33346799999997653 333332 22332211 1223478999999999999999999866 567888876
Q ss_pred ccccCcCCCccccccccccCCCCCCchHH--HHHHHHHcCCCEEEEEecCCCCC------------HHHHHHHHHhhh
Q 003038 694 SSFSSTRADSTEDSRNKRSRDEQSCSYIE--RFAEAVSNNPHRVFLIEDVEQAD------------YCSQKGFKRAIE 757 (854)
Q Consensus 694 s~~~~~~~~s~e~~~~~rl~~~~g~g~~e--~L~eav~~~p~~ViliDEieka~------------~~v~~~Ll~~le 757 (854)
.+.. ++|- |-|... +|++..++...|||||||+|-.- .++-|+||.-||
T Consensus 185 t~li-------GehV--------Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelD 247 (368)
T COG1223 185 TELI-------GEHV--------GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELD 247 (368)
T ss_pred HHHH-------HHHh--------hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhcc
Confidence 6554 3331 113333 78888899889999999999652 247788888876
No 126
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.83 E-value=1.9e-08 Score=114.46 Aligned_cols=135 Identities=11% Similarity=0.168 Sum_probs=90.4
Q ss_pred cccccHHHHHHHHHHHHHh--------hcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEE
Q 003038 619 KVPWQKDTVYDIANTVLKC--------RSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVS 690 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~--------rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~ 690 (854)
.|.|.++.+..|...|... ..|+. +...+||+||+|+|||.+|+++|..+ ...|+.
T Consensus 132 di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~-------------~p~gvLL~GppGtGKT~lAkaia~~~---~~~~i~ 195 (389)
T PRK03992 132 DIGGLEEQIREVREAVELPLKKPELFEEVGIE-------------PPKGVLLYGPPGTGKTLLAKAVAHET---NATFIR 195 (389)
T ss_pred HhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCC-------------CCCceEEECCCCCChHHHHHHHHHHh---CCCEEE
Confidence 4688888888888887542 12222 23468999999999999999999987 356888
Q ss_pred EccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEecCCCC-----------CHHHHHHHHHhhhcC
Q 003038 691 IALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQA-----------DYCSQKGFKRAIESG 759 (854)
Q Consensus 691 id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliDEieka-----------~~~v~~~Ll~~le~G 759 (854)
++++++. ..+ + +.+......+.+..+.+..+||||||||.+ ++.++..|.+.+..-
T Consensus 196 v~~~~l~-------~~~-----~-g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l 262 (389)
T PRK03992 196 VVGSELV-------QKF-----I-GEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEM 262 (389)
T ss_pred eehHHHh-------Hhh-----c-cchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhc
Confidence 8877654 111 0 000012234566666777799999999986 567788888877541
Q ss_pred eEecCCCceeecCCeEEEEecCCCCCCCC
Q 003038 760 RIVTSSGDEVSLGDAIVILSCESFSSRSR 788 (854)
Q Consensus 760 ~l~d~~G~~v~~~~aIiIlTsn~f~~~s~ 788 (854)
.-. .+..+.+||+|||..+....
T Consensus 263 d~~------~~~~~v~VI~aTn~~~~ld~ 285 (389)
T PRK03992 263 DGF------DPRGNVKIIAATNRIDILDP 285 (389)
T ss_pred ccc------CCCCCEEEEEecCChhhCCH
Confidence 111 12247789999997654433
No 127
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.82 E-value=3e-08 Score=110.27 Aligned_cols=135 Identities=21% Similarity=0.283 Sum_probs=84.4
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCC--CceEEEcccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSH--NNFVSIALSS 695 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~--~~~i~id~s~ 695 (854)
..++||++++..+..++... + ..+++|+||+|+|||++|+++++.+++.. .+++.++++.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~-----------------~-~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~ 76 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP-----------------N-LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVAD 76 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC-----------------C-CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhh
Confidence 34689999998888776521 1 23689999999999999999999998653 4678888876
Q ss_pred ccCcC-CCccccccccccCCCC---CCchHHHHHHHH----Hc----CCCEEEEEecCCCCCHHHHHHHHHhhhcCeEec
Q 003038 696 FSSTR-ADSTEDSRNKRSRDEQ---SCSYIERFAEAV----SN----NPHRVFLIEDVEQADYCSQKGFKRAIESGRIVT 763 (854)
Q Consensus 696 ~~~~~-~~s~e~~~~~rl~~~~---g~g~~e~L~eav----~~----~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d 763 (854)
+.... ..-.+.....+..... +....+.+.+.+ +. .+++||+|||++.+++..++.|+..|++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~--- 153 (337)
T PRK12402 77 FFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYS--- 153 (337)
T ss_pred hhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhcc---
Confidence 54100 0000000000001000 000112222222 22 346899999999999999999999998531
Q ss_pred CCCceeecCCeEEEEecC
Q 003038 764 SSGDEVSLGDAIVILSCE 781 (854)
Q Consensus 764 ~~G~~v~~~~aIiIlTsn 781 (854)
.++.||++++
T Consensus 154 --------~~~~~Il~~~ 163 (337)
T PRK12402 154 --------RTCRFIIATR 163 (337)
T ss_pred --------CCCeEEEEeC
Confidence 2456777775
No 128
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.82 E-value=1.9e-08 Score=106.20 Aligned_cols=107 Identities=13% Similarity=0.142 Sum_probs=77.7
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
...+||+++.+.+.-.|...+. + ....-++||+||||.|||+||..+|..+ |. ++.....
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~----r---------~e~lDHvLl~GPPGlGKTTLA~IIA~Em-gv--n~k~tsG---- 85 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK----R---------GEALDHVLLFGPPGLGKTTLAHIIANEL-GV--NLKITSG---- 85 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh----c---------CCCcCeEEeeCCCCCcHHHHHHHHHHHh-cC--CeEeccc----
Confidence 3469999999999888877654 1 1345689999999999999999999999 32 2211111
Q ss_pred CcCCCccccccccccCCCCCCchHHHHHHHHH-cCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEe
Q 003038 698 STRADSTEDSRNKRSRDEQSCSYIERFAEAVS-NNPHRVFLIEDVEQADYCSQKGFKRAIESGRIV 762 (854)
Q Consensus 698 ~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~-~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~ 762 (854)
+. +..+| .|...+. -.|+.|+||||||++.+.+...|..+||+.++-
T Consensus 86 --------p~-----leK~g-----DlaaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lD 133 (332)
T COG2255 86 --------PA-----LEKPG-----DLAAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLD 133 (332)
T ss_pred --------cc-----ccChh-----hHHHHHhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEE
Confidence 00 00111 2333332 367899999999999999999999999997765
No 129
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=9.6e-09 Score=119.96 Aligned_cols=152 Identities=13% Similarity=0.129 Sum_probs=112.0
Q ss_pred HHHHHHHHHHhhc---------cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHH
Q 003038 212 NEDVMYVIENLMS---------KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVE 282 (854)
Q Consensus 212 ~~ei~~v~~~L~r---------~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E 282 (854)
.+|+..+++-|.- +-.+.++|+||||+|||.+++++|-. .++.|++.+.++|+-+|.|==-
T Consensus 159 keel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgE----------A~VPFf~iSGS~FVemfVGvGA 228 (596)
T COG0465 159 KEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGE----------AGVPFFSISGSDFVEMFVGVGA 228 (596)
T ss_pred HHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcc----------cCCCceeccchhhhhhhcCCCc
Confidence 4667777777652 34567999999999999999999854 5788999999999999888778
Q ss_pred HHHHHHHHHHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhc-cc--CCCCceEEEEEecCHHHH
Q 003038 283 QRVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLV-CG--IGENARFWLMGIATFQSY 358 (854)
Q Consensus 283 ~rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll-~~--~~g~g~l~lIgatT~~ey 358 (854)
.|.++++..+++. .|||+|||||+.+ ..++.+ .|.++ .--|+ -+..|| .. ..++..+.+|+||+..+
T Consensus 229 sRVRdLF~qAkk~--aP~IIFIDEiDAvGr~Rg~g-~Gggn--derEQ---TLNQlLvEmDGF~~~~gviviaaTNRpd- 299 (596)
T COG0465 229 SRVRDLFEQAKKN--APCIIFIDEIDAVGRQRGAG-LGGGN--DEREQ---TLNQLLVEMDGFGGNEGVIVIAATNRPD- 299 (596)
T ss_pred HHHHHHHHHhhcc--CCCeEEEehhhhcccccCCC-CCCCc--hHHHH---HHHHHHhhhccCCCCCceEEEecCCCcc-
Confidence 9999999999986 7899999999999 444322 11111 00111 344566 32 23334699999999887
Q ss_pred HHhhccCCchhhhhcc-CCCCCCCchHHH
Q 003038 359 MRCKSGHPSLETLWSL-HPLTIPAGSLSL 386 (854)
Q Consensus 359 ~k~~~~~pale~~~~~-~~v~i~~~sl~~ 386 (854)
.-||||-|--|| ..|.|+-|.+..
T Consensus 300 ----VlD~ALlRpgRFDRqI~V~~PDi~g 324 (596)
T COG0465 300 ----VLDPALLRPGRFDRQILVELPDIKG 324 (596)
T ss_pred ----cchHhhcCCCCcceeeecCCcchhh
Confidence 469999885455 677887777543
No 130
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=2.8e-08 Score=102.72 Aligned_cols=113 Identities=15% Similarity=0.201 Sum_probs=83.0
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEE
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLI 738 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~Vili 738 (854)
-+|++||+|+|||.|||++|..- ...||++..|+|. .++- +.|......++...++|..+||||
T Consensus 191 gvllygppg~gktml~kava~~t---~a~firvvgsefv-------qkyl------gegprmvrdvfrlakenapsiifi 254 (408)
T KOG0727|consen 191 GVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFV-------QKYL------GEGPRMVRDVFRLAKENAPSIIFI 254 (408)
T ss_pred ceEEeCCCCCcHHHHHHHHhhcc---chheeeeccHHHH-------HHHh------ccCcHHHHHHHHHHhccCCcEEEe
Confidence 35778999999999999999864 6789999999987 4432 111123345677778999999999
Q ss_pred ecCCC-----------CCHHHHHHHHHhhhcCeEecCCCceeecCCeEEEEecCCCCCCCCCCCCC
Q 003038 739 EDVEQ-----------ADYCSQKGFKRAIESGRIVTSSGDEVSLGDAIVILSCESFSSRSRACSPP 793 (854)
Q Consensus 739 DEiek-----------a~~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn~f~~~s~~~sp~ 793 (854)
||||. ++.+||..|+..+..- |+... -.|.-+||.+|--|....+.=.|
T Consensus 255 deidaiatkrfdaqtgadrevqril~ellnqm---dgfdq---~~nvkvimatnradtldpallrp 314 (408)
T KOG0727|consen 255 DEIDAIATKRFDAQTGADREVQRILIELLNQM---DGFDQ---TTNVKVIMATNRADTLDPALLRP 314 (408)
T ss_pred ehhhhHhhhhccccccccHHHHHHHHHHHHhc---cCcCc---ccceEEEEecCcccccCHhhcCC
Confidence 99994 6889999999988641 11111 24777999999877776664433
No 131
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.81 E-value=2.1e-08 Score=121.02 Aligned_cols=136 Identities=11% Similarity=0.116 Sum_probs=94.9
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeC
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLG 305 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfid 305 (854)
-+++++|+||||+|||++++.++... ++.++.++.+.+...+.|..+.++++++..++.. .|+|||||
T Consensus 184 ~~~gill~G~~G~GKt~~~~~~a~~~----------~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~--~P~IifID 251 (644)
T PRK10733 184 IPKGVLMVGPPGTGKTLLAKAIAGEA----------KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKA--APCIIFID 251 (644)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHc----------CCCEEEEehHHhHHhhhcccHHHHHHHHHHHHhc--CCcEEEeh
Confidence 36689999999999999999998763 5689999999888889999999999999999875 79999999
Q ss_pred ccccc-cccccccccccccchhhhHHHHHHHhhc---ccCCCCceEEEEEecCHHHHHHhhccCCchhhhhcc-CCCCCC
Q 003038 306 DLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLV---CGIGENARFWLMGIATFQSYMRCKSGHPSLETLWSL-HPLTIP 380 (854)
Q Consensus 306 el~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll---~~~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~-~~v~i~ 380 (854)
|++.+ ..+..+..+. ....+. -+..+| ....++..+.+||||+..+ ..||+|-|-=|| ..|.|+
T Consensus 252 EiD~l~~~r~~~~~g~---~~~~~~---~ln~lL~~mdg~~~~~~vivIaaTN~p~-----~lD~Al~RpgRfdr~i~v~ 320 (644)
T PRK10733 252 EIDAVGRQRGAGLGGG---HDEREQ---TLNQMLVEMDGFEGNEGIIVIAATNRPD-----VLDPALLRPGRFDRQVVVG 320 (644)
T ss_pred hHhhhhhccCCCCCCC---chHHHH---HHHHHHHhhhcccCCCCeeEEEecCChh-----hcCHHHhCCcccceEEEcC
Confidence 99999 4433211110 011112 233444 2112233599999999766 468888763234 344455
Q ss_pred CchH
Q 003038 381 AGSL 384 (854)
Q Consensus 381 ~~sl 384 (854)
-|+.
T Consensus 321 ~Pd~ 324 (644)
T PRK10733 321 LPDV 324 (644)
T ss_pred CCCH
Confidence 4443
No 132
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=3.2e-08 Score=111.89 Aligned_cols=117 Identities=20% Similarity=0.236 Sum_probs=80.5
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCC-------ceEE
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHN-------NFVS 690 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~-------~~i~ 690 (854)
+.|+||+.++..+.+.+... +....+||+||+|+|||++|+++|+.+++... ++..
T Consensus 17 ~~iig~~~~~~~l~~~i~~~-----------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~ 79 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENN-----------------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI 79 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcC-----------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce
Confidence 45799999999988888642 22358999999999999999999999975210 1111
Q ss_pred EccccccCcCCCccccccccccCCCCCCchHH--HHHHHHHcC----CCEEEEEecCCCCCHHHHHHHHHhhhcCeEecC
Q 003038 691 IALSSFSSTRADSTEDSRNKRSRDEQSCSYIE--RFAEAVSNN----PHRVFLIEDVEQADYCSQKGFKRAIESGRIVTS 764 (854)
Q Consensus 691 id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e--~L~eav~~~----p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~ 764 (854)
+++. .....+..+ .+.+.++.. +++||+|||+++++...++.|++.+++.
T Consensus 80 ~~l~-------------------~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~----- 135 (367)
T PRK14970 80 FELD-------------------AASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEP----- 135 (367)
T ss_pred EEec-------------------cccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCC-----
Confidence 1110 000012222 344444433 4689999999999999999999999851
Q ss_pred CCceeecCCeEEEEecC
Q 003038 765 SGDEVSLGDAIVILSCE 781 (854)
Q Consensus 765 ~G~~v~~~~aIiIlTsn 781 (854)
-.+++||++|+
T Consensus 136 ------~~~~~~Il~~~ 146 (367)
T PRK14970 136 ------PAHAIFILATT 146 (367)
T ss_pred ------CCceEEEEEeC
Confidence 23678888875
No 133
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.78 E-value=2.4e-08 Score=114.73 Aligned_cols=106 Identities=14% Similarity=0.198 Sum_probs=72.5
Q ss_pred cccccHHHHHH---HHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccc
Q 003038 619 KVPWQKDTVYD---IANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSS 695 (854)
Q Consensus 619 ~V~GQ~~av~~---Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~ 695 (854)
.++||++++.. +...+.. +...+++|+||+|+|||++|+.||+.+ ...|+.++.+.
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~------------------~~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~~~l~a~~ 71 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEA------------------GRLSSMILWGPPGTGKTTLARIIAGAT---DAPFEALSAVT 71 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHc------------------CCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeccc
Confidence 47999999876 6666542 123478999999999999999999977 34677766542
Q ss_pred ccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeE
Q 003038 696 FSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRI 761 (854)
Q Consensus 696 ~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l 761 (854)
.. ...+. ...+..........+.||||||||++....|+.|+..+++|.+
T Consensus 72 ~~--------~~~ir--------~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~i 121 (413)
T PRK13342 72 SG--------VKDLR--------EVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTI 121 (413)
T ss_pred cc--------HHHHH--------HHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCcE
Confidence 11 00000 0111111112234678999999999999999999999997654
No 134
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.78 E-value=4.8e-08 Score=93.20 Aligned_cols=129 Identities=13% Similarity=0.146 Sum_probs=85.4
Q ss_pred cccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcC
Q 003038 621 PWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTR 700 (854)
Q Consensus 621 ~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~ 700 (854)
+|++.++..|...+.. ....+++++||+|+|||.+++.+++.++.....++.++++.+..
T Consensus 1 ~~~~~~~~~i~~~~~~------------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~-- 60 (151)
T cd00009 1 VGQEEAIEALREALEL------------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLE-- 60 (151)
T ss_pred CchHHHHHHHHHHHhC------------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhh--
Confidence 4677777777666543 12347899999999999999999999976667788888775541
Q ss_pred CCccccccccccCCCCCCch--HHHHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeecCCeEEEE
Q 003038 701 ADSTEDSRNKRSRDEQSCSY--IERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDAIVIL 778 (854)
Q Consensus 701 ~~s~e~~~~~rl~~~~g~g~--~e~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIiIl 778 (854)
........ .+ ..............+|+|||++.+.+.....+++.|+...... ....++.||+
T Consensus 61 -----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~ii~ 125 (151)
T cd00009 61 -----GLVVAELF-----GHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR-----IDRENVRVIG 125 (151)
T ss_pred -----hhHHHHHh-----hhhhHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCcee-----ccCCCeEEEE
Confidence 11100000 00 0011122234456899999999999999999999998743321 2346778889
Q ss_pred ecCCCC
Q 003038 779 SCESFS 784 (854)
Q Consensus 779 Tsn~f~ 784 (854)
++|...
T Consensus 126 ~~~~~~ 131 (151)
T cd00009 126 ATNRPL 131 (151)
T ss_pred ecCccc
Confidence 887533
No 135
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.77 E-value=3.1e-08 Score=116.71 Aligned_cols=142 Identities=11% Similarity=0.116 Sum_probs=99.5
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..++|+..++..+...+.+.-. ...++|+.|++|+||+.+|++|.........+|+.+||..+.
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a~----------------~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~ 250 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVAA----------------SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALP 250 (509)
T ss_pred CceeecCHHHHHHHHHHHHHhC----------------CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCC
Confidence 3699999999999999888522 234789999999999999999999876677899999999886
Q ss_pred CcCCCccccccccccCCC-CC-C-chHHHHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeecCCe
Q 003038 698 STRADSTEDSRNKRSRDE-QS-C-SYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDA 774 (854)
Q Consensus 698 ~~~~~s~e~~~~~rl~~~-~g-~-g~~e~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~~~a 774 (854)
+ ...-+.+.+. .| + |....-...+.......+|||||+.+++.+|..|+++|++|.+.--.|....-.++
T Consensus 251 ~-------~~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 323 (509)
T PRK05022 251 E-------SLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDV 323 (509)
T ss_pred h-------HHHHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecce
Confidence 2 1111111110 00 0 11110011123344678999999999999999999999999886543333333577
Q ss_pred EEEEecCC
Q 003038 775 IVILSCES 782 (854)
Q Consensus 775 IiIlTsn~ 782 (854)
.||++|+.
T Consensus 324 RiI~~t~~ 331 (509)
T PRK05022 324 RVIAATNR 331 (509)
T ss_pred EEEEecCC
Confidence 88888863
No 136
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.6e-08 Score=113.83 Aligned_cols=127 Identities=12% Similarity=0.111 Sum_probs=92.7
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeC
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLG 305 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfid 305 (854)
--+..+|.||||+|||.+++++|-. .++.|+.+..++|.+.|.||.|.-++.|+.-++.. .|-|+|||
T Consensus 185 p~rglLLfGPpgtGKtmL~~aiAsE----------~~atff~iSassLtsK~~Ge~eK~vralf~vAr~~--qPsvifid 252 (428)
T KOG0740|consen 185 PVRGLLLFGPPGTGKTMLAKAIATE----------SGATFFNISASSLTSKYVGESEKLVRALFKVARSL--QPSVIFID 252 (428)
T ss_pred ccchhheecCCCCchHHHHHHHHhh----------hcceEeeccHHHhhhhccChHHHHHHHHHHHHHhc--CCeEEEec
Confidence 4456789999999999999999976 47899999999999999999999999999999975 89999999
Q ss_pred ccccc-cccccccccccccchhhhHHHHHH-Hhhc-ccCCCCceEEEEEecCHHHHHHhhccCCchhhhhccCCC
Q 003038 306 DLEWA-EFRASSSEQVRGYYCSIEHIIMEI-GKLV-CGIGENARFWLMGIATFQSYMRCKSGHPSLETLWSLHPL 377 (854)
Q Consensus 306 el~~l-~~~~~~~~~~~~~~~~~~~~~~~~-~~ll-~~~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~~~v 377 (854)
|++.+ ..+....+. + ....-++. .... +...+++++.+||||+... +.|-++.| |||.+
T Consensus 253 Eidslls~Rs~~e~e----~--srr~ktefLiq~~~~~s~~~drvlvigaTN~P~-----e~Dea~~R--rf~kr 314 (428)
T KOG0740|consen 253 EIDSLLSKRSDNEHE----S--SRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPW-----ELDEAARR--RFVKR 314 (428)
T ss_pred hhHHHHhhcCCcccc----c--chhhhhHHHhhhccccCCCCCeEEEEecCCCch-----HHHHHHHH--Hhhce
Confidence 99999 655321110 1 11122221 1111 2223456899999998533 46677777 77653
No 137
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.6e-08 Score=104.49 Aligned_cols=143 Identities=13% Similarity=0.144 Sum_probs=102.2
Q ss_pred CCCCCCcHHHHHHHHHH------hhc----cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccccccc
Q 003038 205 VSLDPIRNEDVMYVIEN------LMS----KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFR 274 (854)
Q Consensus 205 g~ldpvr~~ei~~v~~~------L~r----~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~ 274 (854)
|.+|- -..||+..++. |-+ .-.+.++|+||||||||.+|+++|.. ..+.|+.+..+.|+
T Consensus 158 ggld~-qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~----------t~a~firvvgsefv 226 (408)
T KOG0727|consen 158 GGLDV-QKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH----------TTAAFIRVVGSEFV 226 (408)
T ss_pred ccchh-hHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc----------cchheeeeccHHHH
Confidence 44443 45566666554 221 35788999999999999999999975 34678999899999
Q ss_pred ccchHHHHHHHHHHHHHHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhccc--CCCCceEEEEE
Q 003038 275 HMNRVEVEQRVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG--IGENARFWLMG 351 (854)
Q Consensus 275 ~~~rge~E~rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~--~~g~g~l~lIg 351 (854)
..|.||-..-++++|..+++. .|.|+|||||+.+ -.+-.+ .++..--+.+..+++-|-+.+ ... .+.+|-
T Consensus 227 qkylgegprmvrdvfrlaken--apsiifideidaiatkrfda---qtgadrevqril~ellnqmdgfdq~~--nvkvim 299 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKEN--APSIIFIDEIDAIATKRFDA---QTGADREVQRILIELLNQMDGFDQTT--NVKVIM 299 (408)
T ss_pred HHHhccCcHHHHHHHHHHhcc--CCcEEEeehhhhHhhhhccc---cccccHHHHHHHHHHHHhccCcCccc--ceEEEE
Confidence 999999999999999999986 7999999999999 222110 011122244555665555532 223 599999
Q ss_pred ecCHHHHHHhhccCCchhh
Q 003038 352 IATFQSYMRCKSGHPSLET 370 (854)
Q Consensus 352 atT~~ey~k~~~~~pale~ 370 (854)
||+... ..||||-|
T Consensus 300 atnrad-----tldpallr 313 (408)
T KOG0727|consen 300 ATNRAD-----TLDPALLR 313 (408)
T ss_pred ecCccc-----ccCHhhcC
Confidence 998765 46899887
No 138
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.77 E-value=1.7e-08 Score=115.00 Aligned_cols=139 Identities=10% Similarity=0.178 Sum_probs=105.3
Q ss_pred hcCcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccc
Q 003038 616 LEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSS 695 (854)
Q Consensus 616 L~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~ 695 (854)
....++|+..++..|-..|.+.- .....+|+.|++|+||..+||+|-+.--....+||.+||..
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA----------------~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaA 202 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVA----------------PSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAA 202 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHh----------------CCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeeccc
Confidence 45689999999999999988752 23457899999999999999999987666678999999998
Q ss_pred ccCcCCCccccccccccCCCCCCchHH-HHHHHHH-------cCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCc
Q 003038 696 FSSTRADSTEDSRNKRSRDEQSCSYIE-RFAEAVS-------NNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGD 767 (854)
Q Consensus 696 ~~~~~~~s~e~~~~~rl~~~~g~g~~e-~L~eav~-------~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~ 767 (854)
+.. .---+.|. ||.. .++++.. ......+|||||..++.++|..||+++++|.++--.|.
T Consensus 203 ip~-------~l~ESELF-----GhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~ 270 (464)
T COG2204 203 IPE-------NLLESELF-----GHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGN 270 (464)
T ss_pred CCH-------HHHHHHhh-----cccccCcCCcccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCC
Confidence 872 22112222 2221 2344433 34567899999999999999999999999999975554
Q ss_pred eeecCCeEEEEecCC
Q 003038 768 EVSLGDAIVILSCES 782 (854)
Q Consensus 768 ~v~~~~aIiIlTsn~ 782 (854)
+--=-|+.||.+||.
T Consensus 271 ~~i~vdvRiIaaT~~ 285 (464)
T COG2204 271 KPIKVDVRIIAATNR 285 (464)
T ss_pred cccceeeEEEeecCc
Confidence 444447889999873
No 139
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=3e-08 Score=102.87 Aligned_cols=143 Identities=12% Similarity=0.121 Sum_probs=103.4
Q ss_pred cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEe
Q 003038 225 KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNL 304 (854)
Q Consensus 225 ~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfi 304 (854)
+-.+.++++||||+|||-++++.|.. .++.|+.|-...|+-+|.|+-.+-+++.|..++.. .|+|+||
T Consensus 203 ~pPKGvLmYGPPGTGKTlmARAcAaq----------T~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEk--aP~IIFI 270 (424)
T KOG0652|consen 203 RPPKGVLMYGPPGTGKTLMARACAAQ----------TNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK--APTIIFI 270 (424)
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHHh----------ccchHHHhcchHHHhhhhcchHHHHHHHHHHhhcc--CCeEEEE
Confidence 35567899999999999999998865 35567777777778889999999999999999985 7999999
Q ss_pred CccccccccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchhhhhcc-CCCCCCCch
Q 003038 305 GDLEWAEFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLETLWSL-HPLTIPAGS 383 (854)
Q Consensus 305 del~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~-~~v~i~~~s 383 (854)
|||+.+|...-.++..+ .--|.+...++-|-|.+.....++.+|+||+.-. ..||||-|--|| ..+..|-|.
T Consensus 271 DElDAIGtKRfDSek~G--DREVQRTMLELLNQLDGFss~~~vKviAATNRvD-----iLDPALlRSGRLDRKIEfP~Pn 343 (424)
T KOG0652|consen 271 DELDAIGTKRFDSEKAG--DREVQRTMLELLNQLDGFSSDDRVKVIAATNRVD-----ILDPALLRSGRLDRKIEFPHPN 343 (424)
T ss_pred echhhhccccccccccc--cHHHHHHHHHHHHhhcCCCCccceEEEeeccccc-----ccCHHHhhcccccccccCCCCC
Confidence 99999943322212111 1224456667777674433345899999998655 468999875455 456666665
Q ss_pred HHH
Q 003038 384 LSL 386 (854)
Q Consensus 384 l~~ 386 (854)
-..
T Consensus 344 e~a 346 (424)
T KOG0652|consen 344 EEA 346 (424)
T ss_pred hHH
Confidence 443
No 140
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.76 E-value=2e-08 Score=111.62 Aligned_cols=145 Identities=12% Similarity=0.128 Sum_probs=86.4
Q ss_pred ccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCc
Q 003038 620 VPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSST 699 (854)
Q Consensus 620 V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~ 699 (854)
.|||..+...+... +. |-.+.+||+||+|+||+.+|+.+|+.+......-..--|..+..+
T Consensus 3 yPW~~~~~~~l~~~--~~-----------------rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C 63 (342)
T PRK06964 3 YPWQTDDWNRLQAL--RA-----------------RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAAC 63 (342)
T ss_pred CcccHHHHHHHHHh--cC-----------------CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHH
Confidence 48999988887773 11 334689999999999999999999999653210000011111100
Q ss_pred CCCccccccccccCCC------------------------------CCCchHH--HHHHHHHcC----CCEEEEEecCCC
Q 003038 700 RADSTEDSRNKRSRDE------------------------------QSCSYIE--RFAEAVSNN----PHRVFLIEDVEQ 743 (854)
Q Consensus 700 ~~~s~e~~~~~rl~~~------------------------------~g~g~~e--~L~eav~~~----p~~ViliDEiek 743 (854)
.......|.--..+.| ...+.++ .|.+.+... .++|++||++|+
T Consensus 64 ~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~ 143 (342)
T PRK06964 64 NWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEA 143 (342)
T ss_pred HHHHcCCCCCEEEEecccccccccccccccccchhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhh
Confidence 0000001100000000 0113333 455555444 478999999999
Q ss_pred CCHHHHHHHHHhhhcCeEecCCCceeecCCeEEEEecCCCCCC-CCCCCCCc
Q 003038 744 ADYCSQKGFKRAIESGRIVTSSGDEVSLGDAIVILSCESFSSR-SRACSPPT 794 (854)
Q Consensus 744 a~~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn~f~~~-s~~~sp~~ 794 (854)
++....|.||+.+|+ .-.+++|||+|+.-+.. ++.-|.|+
T Consensus 144 m~~~AaNaLLKtLEE-----------Pp~~t~fiL~t~~~~~LLpTI~SRcq 184 (342)
T PRK06964 144 LNVAAANALLKTLEE-----------PPPGTVFLLVSARIDRLLPTILSRCR 184 (342)
T ss_pred cCHHHHHHHHHHhcC-----------CCcCcEEEEEECChhhCcHHHHhcCE
Confidence 999999999999996 23678899988653333 33345543
No 141
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.75 E-value=3.2e-08 Score=111.45 Aligned_cols=135 Identities=15% Similarity=0.233 Sum_probs=106.8
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccC
Q 003038 619 KVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSS 698 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~ 698 (854)
.||||..|+..+...|..-- +....+|++|.|||||.-+||+|-++---..++||.+||..+.
T Consensus 224 ~iIG~S~am~~ll~~i~~VA----------------~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlP- 286 (550)
T COG3604 224 GIIGRSPAMRQLLKEIEVVA----------------KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALP- 286 (550)
T ss_pred cceecCHHHHHHHHHHHHHh----------------cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccc-
Confidence 68999999999998887631 2345789999999999999999999887788999999999887
Q ss_pred cCCCccccccccccCCCCCCchHH-HHHHHHHcCCC-------EEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceee
Q 003038 699 TRADSTEDSRNKRSRDEQSCSYIE-RFAEAVSNNPH-------RVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVS 770 (854)
Q Consensus 699 ~~~~s~e~~~~~rl~~~~g~g~~e-~L~eav~~~p~-------~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~ 770 (854)
+.---+.|. ||.. .++.|++.++. .-+|+|||--++..+|-.||+++++|.|.-=.|...-
T Consensus 287 ------esLlESELF-----GHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~i 355 (550)
T COG3604 287 ------ESLLESELF-----GHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTI 355 (550)
T ss_pred ------hHHHHHHHh-----cccccccccchhccCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCcee
Confidence 222222222 4443 57888887764 4699999999999999999999999999864443333
Q ss_pred cCCeEEEEecC
Q 003038 771 LGDAIVILSCE 781 (854)
Q Consensus 771 ~~~aIiIlTsn 781 (854)
--|+.||..||
T Consensus 356 kVDVRiIAATN 366 (550)
T COG3604 356 KVDVRVIAATN 366 (550)
T ss_pred EEEEEEEeccc
Confidence 33678999998
No 142
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.74 E-value=1.5e-08 Score=109.36 Aligned_cols=121 Identities=17% Similarity=0.190 Sum_probs=74.7
Q ss_pred ccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccccccc-ccchHHHHHHHHHHHHHHHhhhCCCeEE
Q 003038 224 SKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFR-HMNRVEVEQRVEEIKNLVRSCLGRGIVL 302 (854)
Q Consensus 224 r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~-~~~rge~E~rl~~l~~~~~~~~~~~~IL 302 (854)
..+-+..||.||||||||++++-++.--.+ ...+|++++...-. ...|+-||+--++. .+ .++..||
T Consensus 159 q~~ipSmIlWGppG~GKTtlArlia~tsk~-------~SyrfvelSAt~a~t~dvR~ife~aq~~~-~l----~krkTil 226 (554)
T KOG2028|consen 159 QNRIPSMILWGPPGTGKTTLARLIASTSKK-------HSYRFVELSATNAKTNDVRDIFEQAQNEK-SL----TKRKTIL 226 (554)
T ss_pred cCCCCceEEecCCCCchHHHHHHHHhhcCC-------CceEEEEEeccccchHHHHHHHHHHHHHH-hh----hcceeEE
Confidence 367888999999999999999988854222 23567777644221 12455554332211 11 1467999
Q ss_pred EeCccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchhh---hhccCCCC
Q 003038 303 NLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLET---LWSLHPLT 378 (854)
Q Consensus 303 fidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale~---~~~~~~v~ 378 (854)
||||||.+ ..... .+|+. -.+|.|.+|||||.+.-. ..+.+|-. +|-|.+++
T Consensus 227 FiDEiHRFNksQQD--------------------~fLP~-VE~G~I~lIGATTENPSF---qln~aLlSRC~VfvLekL~ 282 (554)
T KOG2028|consen 227 FIDEIHRFNKSQQD--------------------TFLPH-VENGDITLIGATTENPSF---QLNAALLSRCRVFVLEKLP 282 (554)
T ss_pred EeHHhhhhhhhhhh--------------------cccce-eccCceEEEecccCCCcc---chhHHHHhccceeEeccCC
Confidence 99999999 55431 24433 334579999999987643 34555543 23344444
Q ss_pred CC
Q 003038 379 IP 380 (854)
Q Consensus 379 i~ 380 (854)
+.
T Consensus 283 ~n 284 (554)
T KOG2028|consen 283 VN 284 (554)
T ss_pred HH
Confidence 43
No 143
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.74 E-value=5e-08 Score=113.40 Aligned_cols=102 Identities=13% Similarity=0.137 Sum_probs=68.2
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEE
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLI 738 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~Vili 738 (854)
-+||+||+|||||.+|+++|..+ ..+|++++++.+. ... .+. ......++....+....+||||
T Consensus 261 GILL~GPpGTGKTllAkaiA~e~---~~~~~~l~~~~l~-------~~~-----vGe-se~~l~~~f~~A~~~~P~IL~I 324 (489)
T CHL00195 261 GLLLVGIQGTGKSLTAKAIANDW---QLPLLRLDVGKLF-------GGI-----VGE-SESRMRQMIRIAEALSPCILWI 324 (489)
T ss_pred eEEEECCCCCcHHHHHHHHHHHh---CCCEEEEEhHHhc-------ccc-----cCh-HHHHHHHHHHHHHhcCCcEEEe
Confidence 57899999999999999999987 4689999987554 110 000 0011124555556667799999
Q ss_pred ecCCCCCH------------HHHHHHHHhhhcCeEecCCCceeecCCeEEEEecCCCCCCC
Q 003038 739 EDVEQADY------------CSQKGFKRAIESGRIVTSSGDEVSLGDAIVILSCESFSSRS 787 (854)
Q Consensus 739 DEieka~~------------~v~~~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn~f~~~s 787 (854)
||||++-. .+.+.|+..|++. -++.+||.|||..+...
T Consensus 325 DEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~-----------~~~V~vIaTTN~~~~Ld 374 (489)
T CHL00195 325 DEIDKAFSNSESKGDSGTTNRVLATFITWLSEK-----------KSPVFVVATANNIDLLP 374 (489)
T ss_pred hhhhhhhccccCCCCchHHHHHHHHHHHHHhcC-----------CCceEEEEecCChhhCC
Confidence 99997633 2445566666531 13567889999765543
No 144
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.74 E-value=3.5e-08 Score=109.75 Aligned_cols=141 Identities=13% Similarity=0.179 Sum_probs=96.7
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..++|++.++..+...+.+.- +...++|+.|++|+||+.+|++|...-.....+|+.+||..+.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a----------------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~ 69 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLA----------------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALN 69 (326)
T ss_pred CccEECCHHHHHHHHHHHHHh----------------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCC
Confidence 458999999998888888752 1234789999999999999999987665556899999999775
Q ss_pred CcCCCccccccccccCC-CCC-C-chHHHHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeecCCe
Q 003038 698 STRADSTEDSRNKRSRD-EQS-C-SYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDA 774 (854)
Q Consensus 698 ~~~~~s~e~~~~~rl~~-~~g-~-g~~e~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~~~a 774 (854)
+ ......+.+ ..+ + |....-...+.......+|||||+.+++.+|..|+++|++|.+.-..|...--.++
T Consensus 70 ~-------~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~ 142 (326)
T PRK11608 70 E-------NLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNV 142 (326)
T ss_pred H-------HHHHHHHccccccccCCcccccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccE
Confidence 1 110011111 000 0 11111112233445678999999999999999999999999887543332222478
Q ss_pred EEEEecC
Q 003038 775 IVILSCE 781 (854)
Q Consensus 775 IiIlTsn 781 (854)
.||+||+
T Consensus 143 RiI~~s~ 149 (326)
T PRK11608 143 RLVCATN 149 (326)
T ss_pred EEEEeCc
Confidence 8888875
No 145
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.73 E-value=3e-08 Score=116.37 Aligned_cols=135 Identities=16% Similarity=0.195 Sum_probs=96.6
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHH--------hCCCCceEE
Q 003038 619 KVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLV--------FGSHNNFVS 690 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~l--------fg~~~~~i~ 690 (854)
.++|+..++..+...+.+.- +...++|+.|++|+||+.+|++|-..+ .....+|+.
T Consensus 220 ~iiG~S~~m~~~~~~i~~~A----------------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~ 283 (538)
T PRK15424 220 DLLGQSPQMEQVRQTILLYA----------------RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVA 283 (538)
T ss_pred heeeCCHHHHHHHHHHHHHh----------------CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEE
Confidence 48999999999998888752 223578999999999999999999873 335679999
Q ss_pred EccccccCcCCCccccccccccCCCCCCchHH-HHHH--------HHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeE
Q 003038 691 IALSSFSSTRADSTEDSRNKRSRDEQSCSYIE-RFAE--------AVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRI 761 (854)
Q Consensus 691 id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e-~L~e--------av~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l 761 (854)
+||+.+. +...-+.+. ||.+ .++. .+.......+|||||+.+++.+|..|+++|+++.+
T Consensus 284 inCaal~-------e~lleseLF-----G~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~ 351 (538)
T PRK15424 284 VNCGAIA-------ESLLEAELF-----GYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEV 351 (538)
T ss_pred eecccCC-------hhhHHHHhc-----CCccccccCccccccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeE
Confidence 9999876 211111111 1111 1111 22344567999999999999999999999999998
Q ss_pred ecCCCceeecCCeEEEEecC
Q 003038 762 VTSSGDEVSLGDAIVILSCE 781 (854)
Q Consensus 762 ~d~~G~~v~~~~aIiIlTsn 781 (854)
+--.|...---|+.||++||
T Consensus 352 ~r~G~~~~~~~dvRiIaat~ 371 (538)
T PRK15424 352 TRVGGHQPVPVDVRVISATH 371 (538)
T ss_pred EecCCCceeccceEEEEecC
Confidence 75444333234677888775
No 146
>PHA02244 ATPase-like protein
Probab=98.73 E-value=1.5e-07 Score=104.42 Aligned_cols=110 Identities=18% Similarity=0.212 Sum_probs=77.8
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCchHH-HHHHHHHcCCCEEEE
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIE-RFAEAVSNNPHRVFL 737 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e-~L~eav~~~p~~Vil 737 (854)
.+||.||+|||||.+|++||..+ ..+|++++. .. +...+...+...+ .+.+ .|+.++++ ..+++
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~l---g~pfv~In~--l~-------d~~~L~G~i~~~g-~~~dgpLl~A~~~--GgvLi 185 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEAL---DLDFYFMNA--IM-------DEFELKGFIDANG-KFHETPFYEAFKK--GGLFF 185 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh---CCCEEEEec--Ch-------HHHhhcccccccc-cccchHHHHHhhc--CCEEE
Confidence 57889999999999999999986 356887762 22 1111111111111 2222 57777654 57999
Q ss_pred EecCCCCCHHHHHHHHHhhhcCeEecCCCceeecCCeEEEEecCCC
Q 003038 738 IEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDAIVILSCESF 783 (854)
Q Consensus 738 iDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn~f 783 (854)
||||+.++++++..|..+++++.+.-..++...-.+..||+|+|..
T Consensus 186 LDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~ 231 (383)
T PHA02244 186 IDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTL 231 (383)
T ss_pred EeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCC
Confidence 9999999999999999999998777554443344788999999963
No 147
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=9.5e-08 Score=98.72 Aligned_cols=143 Identities=13% Similarity=0.116 Sum_probs=109.9
Q ss_pred hhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeE
Q 003038 222 LMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIV 301 (854)
Q Consensus 222 L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~I 301 (854)
|.-...+.++|+||||+|||-+++++|.. ..+.|+.++.+.|+-.|.||--.-+++||--++.+ .|.|
T Consensus 176 LGIaQPKGvlLygppgtGktLlaraVahh----------t~c~firvsgselvqk~igegsrmvrelfvmareh--apsi 243 (404)
T KOG0728|consen 176 LGIAQPKGVLLYGPPGTGKTLLARAVAHH----------TDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREH--APSI 243 (404)
T ss_pred cCCCCCcceEEecCCCCchhHHHHHHHhh----------cceEEEEechHHHHHHHhhhhHHHHHHHHHHHHhc--CCce
Confidence 44447788999999999999999999975 57899999999999999999999999999999998 7999
Q ss_pred EEeCccccc-cccccccccccccchhhhHHHHHHHhhccc--CCCCceEEEEEecCHHHHHHhhccCCchhhhhcc-CCC
Q 003038 302 LNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG--IGENARFWLMGIATFQSYMRCKSGHPSLETLWSL-HPL 377 (854)
Q Consensus 302 Lfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~--~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~-~~v 377 (854)
+|+|||+.+ ..+..++. +..+-+.+...++-|-|.. +.. .+.+|-||+.=. ..||||-|--|. ..+
T Consensus 244 ifmdeidsigs~r~e~~~---ggdsevqrtmlellnqldgfeatk--nikvimatnrid-----ild~allrpgridrki 313 (404)
T KOG0728|consen 244 IFMDEIDSIGSSRVESGS---GGDSEVQRTMLELLNQLDGFEATK--NIKVIMATNRID-----ILDPALLRPGRIDRKI 313 (404)
T ss_pred EeeecccccccccccCCC---CccHHHHHHHHHHHHhcccccccc--ceEEEEeccccc-----cccHhhcCCCcccccc
Confidence 999999999 44432211 1234456677777777743 333 599999997533 468998874444 567
Q ss_pred CCCCchHHH
Q 003038 378 TIPAGSLSL 386 (854)
Q Consensus 378 ~i~~~sl~~ 386 (854)
..|+|+.++
T Consensus 314 efp~p~e~a 322 (404)
T KOG0728|consen 314 EFPPPNEEA 322 (404)
T ss_pred cCCCCCHHH
Confidence 777776554
No 148
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.72 E-value=9.9e-08 Score=104.94 Aligned_cols=106 Identities=13% Similarity=0.124 Sum_probs=72.7
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
+.++||++++..|...+...+.. .++..+++|+||+|+|||.+|+++|+.+- ..+..++.+...
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~-------------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~---~~~~~~~~~~~~ 67 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMR-------------QEALDHLLLYGPPGLGKTTLAHIIANEMG---VNLKITSGPALE 67 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhc-------------CCCCCeEEEECCCCCCHHHHHHHHHHHhC---CCEEEeccchhc
Confidence 35799999999988887654321 12234789999999999999999999872 123222221111
Q ss_pred CcCCCccccccccccCCCCCCchHHHHHHHHHc-CCCEEEEEecCCCCCHHHHHHHHHhhhcCeE
Q 003038 698 STRADSTEDSRNKRSRDEQSCSYIERFAEAVSN-NPHRVFLIEDVEQADYCSQKGFKRAIESGRI 761 (854)
Q Consensus 698 ~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~-~p~~ViliDEieka~~~v~~~Ll~~le~G~l 761 (854)
.. + .+.+.+.. ....|+|||||+++++..++.|+.+|++++.
T Consensus 68 -----------------~~--~---~l~~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~ 110 (305)
T TIGR00635 68 -----------------KP--G---DLAAILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRL 110 (305)
T ss_pred -----------------Cc--h---hHHHHHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhhe
Confidence 00 1 12222222 3457999999999999999999999998764
No 149
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.72 E-value=1.1e-07 Score=105.80 Aligned_cols=128 Identities=12% Similarity=0.123 Sum_probs=83.7
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..++||++++..+...+...+.. ..+...++|+||+|+|||++|+.+|+.+ + ..+..++.+.+.
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~-------------~~~~~~~ll~GppG~GKT~la~~ia~~l-~--~~~~~~~~~~~~ 88 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKR-------------GEALDHVLLYGPPGLGKTTLANIIANEM-G--VNIRITSGPALE 88 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhc-------------CCCCCcEEEECCCCccHHHHHHHHHHHh-C--CCeEEEeccccc
Confidence 34799999999988888665331 1344588999999999999999999988 2 233333322111
Q ss_pred CcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEec--CCC---cee--e
Q 003038 698 STRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVT--SSG---DEV--S 770 (854)
Q Consensus 698 ~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d--~~G---~~v--~ 770 (854)
.. +....+...+ .+..||||||||++++..++.|+.+|++.++.. ..| +.+ .
T Consensus 89 -----------------~~--~~l~~~l~~l--~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~ 147 (328)
T PRK00080 89 -----------------KP--GDLAAILTNL--EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLD 147 (328)
T ss_pred -----------------Ch--HHHHHHHHhc--ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeec
Confidence 00 1111122222 356899999999999999999999999876431 111 222 2
Q ss_pred cCCeEEEEecCC
Q 003038 771 LGDAIVILSCES 782 (854)
Q Consensus 771 ~~~aIiIlTsn~ 782 (854)
....++|+++|.
T Consensus 148 l~~~~li~at~~ 159 (328)
T PRK00080 148 LPPFTLIGATTR 159 (328)
T ss_pred CCCceEEeecCC
Confidence 345667777764
No 150
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.70 E-value=3.1e-08 Score=119.93 Aligned_cols=142 Identities=10% Similarity=0.098 Sum_probs=96.9
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..++|++.++..+...+.+.- +...++||.|++|+||+.+|++|.........+|+.+||..+.
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a----------------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~ 388 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAA----------------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYP 388 (638)
T ss_pred cceEECCHHHHHHHHHHHHHh----------------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCC
Confidence 468999988887777766642 1234689999999999999999999877677899999999876
Q ss_pred CcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeecCCeEEE
Q 003038 698 STRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDAIVI 777 (854)
Q Consensus 698 ~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIiI 777 (854)
+....+.+.+....+........+.......+|||||+.+++.+|..|+++|++|.++...|...---++.||
T Consensus 389 -------~~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI 461 (638)
T PRK11388 389 -------DEALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVI 461 (638)
T ss_pred -------hHHHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEE
Confidence 2111111221000000000011233445789999999999999999999999999988543322222256788
Q ss_pred EecCC
Q 003038 778 LSCES 782 (854)
Q Consensus 778 lTsn~ 782 (854)
+||+.
T Consensus 462 ~~t~~ 466 (638)
T PRK11388 462 ATTTA 466 (638)
T ss_pred EeccC
Confidence 88763
No 151
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.70 E-value=8.9e-08 Score=105.13 Aligned_cols=121 Identities=11% Similarity=0.124 Sum_probs=82.3
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCC-CchHH-HHHHHHHcCCCEEE
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQS-CSYIE-RFAEAVSNNPHRVF 736 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g-~g~~e-~L~eav~~~p~~Vi 736 (854)
.+||.||+|+|||++|+.||+.+ ..++++++++......+.-+ .... .+..+.. ..|.+ .|..+.++ ..++
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l---~~~~~rV~~~~~l~~~DliG-~~~~-~l~~g~~~~~f~~GpL~~A~~~--g~il 138 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARL---NWPCVRVNLDSHVSRIDLVG-KDAI-VLKDGKQITEFRDGILPWALQH--NVAL 138 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHH---CCCeEEEEecCCCChhhcCC-Ccee-eccCCcceeEEecCcchhHHhC--CeEE
Confidence 58999999999999999999999 46889999886552111110 0000 0000000 01111 35555543 3689
Q ss_pred EEecCCCCCHHHHHHHHHhhh-cCeEec-CCCceeecC-CeEEEEecCCCCCC
Q 003038 737 LIEDVEQADYCSQKGFKRAIE-SGRIVT-SSGDEVSLG-DAIVILSCESFSSR 786 (854)
Q Consensus 737 liDEieka~~~v~~~Ll~~le-~G~l~d-~~G~~v~~~-~aIiIlTsn~f~~~ 786 (854)
|||||+.++|++++.|..++| +|.++- ..|+.+.-. +-.+|.|.|..++.
T Consensus 139 llDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~G 191 (327)
T TIGR01650 139 CFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLG 191 (327)
T ss_pred EechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcC
Confidence 999999999999999999999 567775 456777554 77899999976543
No 152
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=2.5e-08 Score=104.99 Aligned_cols=127 Identities=13% Similarity=0.117 Sum_probs=95.3
Q ss_pred hccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEE
Q 003038 223 MSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVL 302 (854)
Q Consensus 223 ~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~IL 302 (854)
.-+-.+.++|+|+||+|||-+++++|.. -.+.|+.+--+.|+-.|.|+-.+-+++||.-+..+ .|.|+
T Consensus 215 GikpPKGVIlyG~PGTGKTLLAKAVANq----------TSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~--apSIv 282 (440)
T KOG0726|consen 215 GIKPPKGVILYGEPGTGKTLLAKAVANQ----------TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEH--APSIV 282 (440)
T ss_pred CCCCCCeeEEeCCCCCchhHHHHHHhcc----------cchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhc--CCceE
Confidence 3356778999999999999999999965 34577777777788889999999999999999987 79999
Q ss_pred EeCccccc-ccc-ccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchhh
Q 003038 303 NLGDLEWA-EFR-ASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLET 370 (854)
Q Consensus 303 fidel~~l-~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale~ 370 (854)
|||||+.+ ..+ .+.++|.. -+.+...++-|-|...-.||++.+|-||+-=+ ..||||-|
T Consensus 283 FiDEIdAiGtKRyds~Sgger----EiQrtmLELLNQldGFdsrgDvKvimATnrie-----~LDPaLiR 343 (440)
T KOG0726|consen 283 FIDEIDAIGTKRYDSNSGGER----EIQRTMLELLNQLDGFDSRGDVKVIMATNRIE-----TLDPALIR 343 (440)
T ss_pred EeehhhhhccccccCCCccHH----HHHHHHHHHHHhccCccccCCeEEEEeccccc-----ccCHhhcC
Confidence 99999999 322 22222211 23355567666664422245799999998544 46888887
No 153
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.68 E-value=1.7e-08 Score=106.59 Aligned_cols=121 Identities=15% Similarity=0.146 Sum_probs=76.9
Q ss_pred CcHHHHHHHHHHhhccCc-C-----CceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHH
Q 003038 210 IRNEDVMYVIENLMSKRK-R-----NFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQ 283 (854)
Q Consensus 210 vr~~ei~~v~~~L~r~~k-~-----n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~ 283 (854)
+.++.++.-+++.-+-.| | +++|+||||.|||+++.-+|..+ |+.+... .|-.=+
T Consensus 29 iGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em----------gvn~k~t---------sGp~le 89 (332)
T COG2255 29 IGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL----------GVNLKIT---------SGPALE 89 (332)
T ss_pred cChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh----------cCCeEec---------cccccc
Confidence 367888888888754422 2 48999999999999999999875 2333332 233334
Q ss_pred HHHHHHHHHHhhhCCCeEEEeCccccc-ccccccccccccc-chhhhHHHHHHHhhccc-CCCC----ceEEEEEecCHH
Q 003038 284 RVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGY-YCSIEHIIMEIGKLVCG-IGEN----ARFWLMGIATFQ 356 (854)
Q Consensus 284 rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~-~~g~----g~l~lIgatT~~ 356 (854)
|-.+|...+... ..+.||||||||.+ .. ..+. |.+||.-..|+----+| ++.- ..|++|||||-.
T Consensus 90 K~gDlaaiLt~L-e~~DVLFIDEIHrl~~~-------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~ 161 (332)
T COG2255 90 KPGDLAAILTNL-EEGDVLFIDEIHRLSPA-------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRA 161 (332)
T ss_pred ChhhHHHHHhcC-CcCCeEEEehhhhcChh-------HHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeecccc
Confidence 555566666554 56889999999999 43 1232 66666654442111122 2110 259999999954
Q ss_pred H
Q 003038 357 S 357 (854)
Q Consensus 357 e 357 (854)
-
T Consensus 162 G 162 (332)
T COG2255 162 G 162 (332)
T ss_pred c
Confidence 3
No 154
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.68 E-value=1.3e-07 Score=104.57 Aligned_cols=116 Identities=15% Similarity=0.149 Sum_probs=80.4
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..|+||++++..+...+... +....+||+||+|+|||++|+++++.+ + ..++.++++. .
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~-----------------~~~~~lll~G~~G~GKT~la~~l~~~~-~--~~~~~i~~~~-~ 79 (316)
T PHA02544 21 DECILPAADKETFKSIVKKG-----------------RIPNMLLHSPSPGTGKTTVAKALCNEV-G--AEVLFVNGSD-C 79 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcC-----------------CCCeEEEeeCcCCCCHHHHHHHHHHHh-C--ccceEeccCc-c
Confidence 35799999999888777631 223577889999999999999999987 2 3566666543 1
Q ss_pred CcCCCccccccccccCCCCCCchHHHHHHHHHc----CCCEEEEEecCCCC-CHHHHHHHHHhhhcCeEecCCCceeecC
Q 003038 698 STRADSTEDSRNKRSRDEQSCSYIERFAEAVSN----NPHRVFLIEDVEQA-DYCSQKGFKRAIESGRIVTSSGDEVSLG 772 (854)
Q Consensus 698 ~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~----~p~~ViliDEieka-~~~v~~~Ll~~le~G~l~d~~G~~v~~~ 772 (854)
. .. ...+.+.+.... .+++||+|||+|++ ..+.++.|+..+++. -+
T Consensus 80 -------~---~~--------~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~-----------~~ 130 (316)
T PHA02544 80 -------R---ID--------FVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAY-----------SK 130 (316)
T ss_pred -------c---HH--------HHHHHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhc-----------CC
Confidence 0 00 000112222221 35789999999999 778899999889852 14
Q ss_pred CeEEEEecCCC
Q 003038 773 DAIVILSCESF 783 (854)
Q Consensus 773 ~aIiIlTsn~f 783 (854)
++.||+|||..
T Consensus 131 ~~~~Ilt~n~~ 141 (316)
T PHA02544 131 NCSFIITANNK 141 (316)
T ss_pred CceEEEEcCCh
Confidence 67899999854
No 155
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.68 E-value=2.6e-08 Score=107.60 Aligned_cols=90 Identities=17% Similarity=0.262 Sum_probs=61.2
Q ss_pred ceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCchHH-HHHHHHHcCCCEE
Q 003038 657 ETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIE-RFAEAVSNNPHRV 735 (854)
Q Consensus 657 ~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e-~L~eav~~~p~~V 735 (854)
+.+++|+||+|+|||+|||.||..--...-.||.+....-. ....+ +..+ .-.+...-+...|
T Consensus 162 ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~-----------t~dvR-----~ife~aq~~~~l~krkTi 225 (554)
T KOG2028|consen 162 IPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAK-----------TNDVR-----DIFEQAQNEKSLTKRKTI 225 (554)
T ss_pred CCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccc-----------hHHHH-----HHHHHHHHHHhhhcceeE
Confidence 56899999999999999999998653333346655433111 00000 1111 1111112244689
Q ss_pred EEEecCCCCCHHHHHHHHHhhhcCeEe
Q 003038 736 FLIEDVEQADYCSQKGFKRAIESGRIV 762 (854)
Q Consensus 736 iliDEieka~~~v~~~Ll~~le~G~l~ 762 (854)
+|||||++.....|+.||..+|+|.++
T Consensus 226 lFiDEiHRFNksQQD~fLP~VE~G~I~ 252 (554)
T KOG2028|consen 226 LFIDEIHRFNKSQQDTFLPHVENGDIT 252 (554)
T ss_pred EEeHHhhhhhhhhhhcccceeccCceE
Confidence 999999999999999999999999887
No 156
>PRK04195 replication factor C large subunit; Provisional
Probab=98.67 E-value=1.6e-07 Score=110.10 Aligned_cols=117 Identities=16% Similarity=0.193 Sum_probs=81.2
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccC
Q 003038 619 KVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSS 698 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~ 698 (854)
.|+||++++..|...+.....| ++...+||+||+|+|||++|++||+.+ | -.++.++.+.+.
T Consensus 15 dlvg~~~~~~~l~~~l~~~~~g--------------~~~~~lLL~GppG~GKTtla~ala~el-~--~~~ielnasd~r- 76 (482)
T PRK04195 15 DVVGNEKAKEQLREWIESWLKG--------------KPKKALLLYGPPGVGKTSLAHALANDY-G--WEVIELNASDQR- 76 (482)
T ss_pred HhcCCHHHHHHHHHHHHHHhcC--------------CCCCeEEEECCCCCCHHHHHHHHHHHc-C--CCEEEEcccccc-
Confidence 3799999999999988765432 234589999999999999999999988 2 457777776543
Q ss_pred cCCCccccccccccCCCCCCchHHHHHHHHH-----cCCCEEEEEecCCCCCH----HHHHHHHHhhhcCeEecCCCcee
Q 003038 699 TRADSTEDSRNKRSRDEQSCSYIERFAEAVS-----NNPHRVFLIEDVEQADY----CSQKGFKRAIESGRIVTSSGDEV 769 (854)
Q Consensus 699 ~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~-----~~p~~ViliDEieka~~----~v~~~Ll~~le~G~l~d~~G~~v 769 (854)
....+.+. +.++.. ..++.||+|||+|.++. ..++.|++.+++.
T Consensus 77 ------~~~~i~~~-----------i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~---------- 129 (482)
T PRK04195 77 ------TADVIERV-----------AGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKA---------- 129 (482)
T ss_pred ------cHHHHHHH-----------HHHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHcC----------
Confidence 11111111 111111 13678999999999876 6788899999853
Q ss_pred ecCCeEEEEecCCC
Q 003038 770 SLGDAIVILSCESF 783 (854)
Q Consensus 770 ~~~~aIiIlTsn~f 783 (854)
+.-|||+||..
T Consensus 130 ---~~~iIli~n~~ 140 (482)
T PRK04195 130 ---KQPIILTANDP 140 (482)
T ss_pred ---CCCEEEeccCc
Confidence 22377778753
No 157
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.67 E-value=5.4e-08 Score=114.28 Aligned_cols=135 Identities=16% Similarity=0.202 Sum_probs=96.9
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccC
Q 003038 619 KVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSS 698 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~ 698 (854)
.++|+..++..+...+.+.- +...++|+.|++|+||+.+|+.|...-.....+|+.+||..+.
T Consensus 213 ~iiG~S~~m~~~~~~i~~~A----------------~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~- 275 (526)
T TIGR02329 213 DLLGASAPMEQVRALVRLYA----------------RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIA- 275 (526)
T ss_pred heeeCCHHHHHHHHHHHHHh----------------CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCC-
Confidence 48999999999888887652 2235789999999999999999988766677899999999876
Q ss_pred cCCCccccccccccCCCCCCchHH-HHH--------HHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCcee
Q 003038 699 TRADSTEDSRNKRSRDEQSCSYIE-RFA--------EAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEV 769 (854)
Q Consensus 699 ~~~~s~e~~~~~rl~~~~g~g~~e-~L~--------eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v 769 (854)
+...-+.+. ||.+ .++ ..+.......+|||||+.+++.+|..|+++|+++.++.-.|...
T Consensus 276 ------e~lleseLF-----G~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~ 344 (526)
T TIGR02329 276 ------ESLLEAELF-----GYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEP 344 (526)
T ss_pred ------hhHHHHHhc-----CCcccccccccccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCce
Confidence 211111111 1111 111 11223446789999999999999999999999998875444333
Q ss_pred ecCCeEEEEecC
Q 003038 770 SLGDAIVILSCE 781 (854)
Q Consensus 770 ~~~~aIiIlTsn 781 (854)
---|+.||++|+
T Consensus 345 ~~~dvRiIaat~ 356 (526)
T TIGR02329 345 VPVDVRVVAATH 356 (526)
T ss_pred eeecceEEeccC
Confidence 334677888775
No 158
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.67 E-value=1.6e-07 Score=114.76 Aligned_cols=141 Identities=11% Similarity=0.148 Sum_probs=98.9
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccC
Q 003038 619 KVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSS 698 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~ 698 (854)
.++|+..++..+...+.+.-. ...++|+.|++|+|||.+|++|...-.....+|+.+||..+..
T Consensus 377 ~liG~S~~~~~~~~~~~~~a~----------------~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~ 440 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVAQ----------------SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 440 (686)
T ss_pred ceeecCHHHHHHHHHHHHHhC----------------CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh
Confidence 699999999888888776421 2347899999999999999999987766678999999987651
Q ss_pred cCCCccccccccccCC-CCC-C-chHHHHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeecCCeE
Q 003038 699 TRADSTEDSRNKRSRD-EQS-C-SYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDAI 775 (854)
Q Consensus 699 ~~~~s~e~~~~~rl~~-~~g-~-g~~e~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~~~aI 775 (854)
....+.+.+ ..+ + |....-...+.....+++|||||+.+++++|..|+++|++|.+....+...-..++.
T Consensus 441 -------~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~R 513 (686)
T PRK15429 441 -------GLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVR 513 (686)
T ss_pred -------hHhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEE
Confidence 110111111 000 1 111111122334456899999999999999999999999998876444444446788
Q ss_pred EEEecCC
Q 003038 776 VILSCES 782 (854)
Q Consensus 776 iIlTsn~ 782 (854)
||+||+.
T Consensus 514 iI~~t~~ 520 (686)
T PRK15429 514 LIAATNR 520 (686)
T ss_pred EEEeCCC
Confidence 9998863
No 159
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=6.7e-08 Score=100.60 Aligned_cols=138 Identities=12% Similarity=0.089 Sum_probs=102.0
Q ss_pred cHHHHHHHHHHhh-------------ccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccc
Q 003038 211 RNEDVMYVIENLM-------------SKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMN 277 (854)
Q Consensus 211 r~~ei~~v~~~L~-------------r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~ 277 (854)
..++|.++-++.. -.-.+.++|+||||+|||-.++++|.| .++-|+.+=-+.|+..|
T Consensus 182 ckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanr----------tdacfirvigselvqky 251 (435)
T KOG0729|consen 182 CKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANR----------TDACFIRVIGSELVQKY 251 (435)
T ss_pred hHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcc----------cCceEEeehhHHHHHHH
Confidence 5666666655522 124567999999999999999999988 46788888788888889
Q ss_pred hHHHHHHHHHHHHHHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhccc--CCCCceEEEEEecC
Q 003038 278 RVEVEQRVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG--IGENARFWLMGIAT 354 (854)
Q Consensus 278 rge~E~rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~--~~g~g~l~lIgatT 354 (854)
.||-..-+++||+-++.. +-||+|+|||+.+ |++-.. |.+ ...-+.+...++-+-|.. .|| .+.++-||+
T Consensus 252 vgegarmvrelf~martk--kaciiffdeidaiggarfdd--g~g-gdnevqrtmleli~qldgfdprg--nikvlmatn 324 (435)
T KOG0729|consen 252 VGEGARMVRELFEMARTK--KACIIFFDEIDAIGGARFDD--GAG-GDNEVQRTMLELINQLDGFDPRG--NIKVLMATN 324 (435)
T ss_pred hhhhHHHHHHHHHHhccc--ceEEEEeeccccccCccccC--CCC-CcHHHHHHHHHHHHhccCCCCCC--CeEEEeecC
Confidence 999999999999999874 7899999999999 765321 111 122345566676666643 456 599998887
Q ss_pred HHHHHHhhccCCchhh
Q 003038 355 FQSYMRCKSGHPSLET 370 (854)
Q Consensus 355 ~~ey~k~~~~~pale~ 370 (854)
... ..||||-|
T Consensus 325 rpd-----tldpallr 335 (435)
T KOG0729|consen 325 RPD-----TLDPALLR 335 (435)
T ss_pred CCC-----CcCHhhcC
Confidence 433 36888877
No 160
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.67 E-value=5.8e-08 Score=114.55 Aligned_cols=142 Identities=12% Similarity=0.088 Sum_probs=96.1
Q ss_pred cCcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccc
Q 003038 617 EKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSF 696 (854)
Q Consensus 617 ~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~ 696 (854)
...++|+..++..+...+.+.-. ...++|++|++|+||+.+|+++...-.....+|+.+||+.+
T Consensus 203 f~~~ig~s~~~~~~~~~~~~~A~----------------~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~ 266 (520)
T PRK10820 203 FSQIVAVSPKMRQVVEQARKLAM----------------LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASI 266 (520)
T ss_pred ccceeECCHHHHHHHHHHHHHhC----------------CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccC
Confidence 34789999888877777665421 13368999999999999999998877667789999999987
Q ss_pred cCcCCCccccccccccCC-CCC-C-chHHHHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeecCC
Q 003038 697 SSTRADSTEDSRNKRSRD-EQS-C-SYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGD 773 (854)
Q Consensus 697 ~~~~~~s~e~~~~~rl~~-~~g-~-g~~e~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~~~ 773 (854)
. +...-+.+.+ .+| + |..+.-...+.......+|||||+.+++.+|..|+++|++|.++...+...--.+
T Consensus 267 ~-------~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 339 (520)
T PRK10820 267 P-------DDVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVD 339 (520)
T ss_pred C-------HHHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeee
Confidence 6 2111111111 010 0 1101001122334467899999999999999999999999988754433333346
Q ss_pred eEEEEecC
Q 003038 774 AIVILSCE 781 (854)
Q Consensus 774 aIiIlTsn 781 (854)
+.||+||+
T Consensus 340 vRiI~st~ 347 (520)
T PRK10820 340 VRVICATQ 347 (520)
T ss_pred eEEEEecC
Confidence 77888775
No 161
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=98.66 E-value=4.5e-08 Score=78.77 Aligned_cols=52 Identities=27% Similarity=0.397 Sum_probs=47.4
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHhcCCcHHHHHHHHcCCChhhHHHHHHHHHHHh
Q 003038 23 AMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALELCFNVAL 77 (854)
Q Consensus 23 A~~~A~~~gh~~Vt~eHLLlaLL~~~~s~l~~iL~~~gvd~~~~~aL~~~l~~~L 77 (854)
|+++|++++|.+|+++|||++|+.++++.+.++|+++|+++ +.++..++..+
T Consensus 1 A~~~A~~~~~~~i~~eHlL~all~~~~~~~~~il~~~~id~---~~l~~~i~~~l 52 (53)
T PF02861_consen 1 AQELARERGHQYISPEHLLLALLEDPDSIAARILKKLGIDP---EQLKAAIEKAL 52 (53)
T ss_dssp HHHHHHHTTBSSE-HHHHHHHHHHHTTSHHHHHHHHTTCHH---HHHHHHHHHHH
T ss_pred CHHHHHHcCCCcccHHHHHHHHHhhhhHHHHHHHHHcCCCH---HHHHHHHHHHh
Confidence 78999999999999999999999999999999999999986 78888888765
No 162
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.65 E-value=1.3e-07 Score=96.77 Aligned_cols=116 Identities=19% Similarity=0.198 Sum_probs=68.7
Q ss_pred cceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCC--CCchHH--HHHHHHHc-
Q 003038 656 EETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQ--SCSYIE--RFAEAVSN- 730 (854)
Q Consensus 656 p~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~--g~g~~e--~L~eav~~- 730 (854)
....+||+||+|+|||++|+.+|+.+++....-. ..+..+..+.......|.--..+.+. ..+..+ .+.+.+..
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~-~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~ 91 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGG-EPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRT 91 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccC
Confidence 3468999999999999999999999986421000 00000000000000000000001111 113333 34555554
Q ss_pred ---CCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeecCCeEEEEecCCC
Q 003038 731 ---NPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDAIVILSCESF 783 (854)
Q Consensus 731 ---~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn~f 783 (854)
.+++||+|||+|+++...++.|+..||+. -.+++|||+++..
T Consensus 92 ~~~~~~kviiide~~~l~~~~~~~Ll~~le~~-----------~~~~~~il~~~~~ 136 (188)
T TIGR00678 92 PQESGRRVVIIEDAERMNEAAANALLKTLEEP-----------PPNTLFILITPSP 136 (188)
T ss_pred cccCCeEEEEEechhhhCHHHHHHHHHHhcCC-----------CCCeEEEEEECCh
Confidence 45789999999999999999999999862 1467888888643
No 163
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.65 E-value=1.3e-07 Score=107.64 Aligned_cols=134 Identities=13% Similarity=0.130 Sum_probs=85.2
Q ss_pred cccccHHHHHHHHHHHHHh--------hcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEE
Q 003038 619 KVPWQKDTVYDIANTVLKC--------RSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVS 690 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~--------rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~ 690 (854)
.|.|.+..+..|..+|... +.|+. |...+||+||+|+|||.+|+++|..+ ...|++
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~-------------~pkgvLL~GppGTGKT~LAkalA~~l---~~~fi~ 209 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIGID-------------PPRGVLLYGPPGTGKTMLAKAVAHHT---TATFIR 209 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCC-------------CCceEEEECCCCCCHHHHHHHHHHhc---CCCEEE
Confidence 4789999999988888532 22332 23367889999999999999999987 356788
Q ss_pred EccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEecCCCC-----------CHHHHHHHHHhhhcC
Q 003038 691 IALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQA-----------DYCSQKGFKRAIESG 759 (854)
Q Consensus 691 id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliDEieka-----------~~~v~~~Ll~~le~G 759 (854)
+..+++. .++ + +.+......+....+.+..+||||||||.+ +..++..+.+.+..-
T Consensus 210 i~~s~l~-------~k~-----~-ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~l 276 (398)
T PTZ00454 210 VVGSEFV-------QKY-----L-GEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQM 276 (398)
T ss_pred EehHHHH-------HHh-----c-chhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHh
Confidence 8766543 111 1 000012234555666667799999999965 345666666665431
Q ss_pred eEecCCCceeecCCeEEEEecCCCCCCC
Q 003038 760 RIVTSSGDEVSLGDAIVILSCESFSSRS 787 (854)
Q Consensus 760 ~l~d~~G~~v~~~~aIiIlTsn~f~~~s 787 (854)
|.. -.-.+.+||+|||..+...
T Consensus 277 ---d~~---~~~~~v~VI~aTN~~d~LD 298 (398)
T PTZ00454 277 ---DGF---DQTTNVKVIMATNRADTLD 298 (398)
T ss_pred ---hcc---CCCCCEEEEEecCCchhCC
Confidence 000 0124678999998655443
No 164
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=5.1e-08 Score=108.17 Aligned_cols=134 Identities=13% Similarity=0.133 Sum_probs=81.5
Q ss_pred ccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCc
Q 003038 620 VPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSST 699 (854)
Q Consensus 620 V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~ 699 (854)
.|||..+...+... . | |-.+.+||.||+|+||+.+|+.+|+.+......--...|..+.++
T Consensus 3 yPW~~~~w~~l~~~--~---~--------------r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C 63 (325)
T PRK08699 3 YPWHQEQWRQIAEH--W---E--------------RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSC 63 (325)
T ss_pred CCccHHHHHHHHHh--c---C--------------CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHH
Confidence 48999888887765 1 1 234689999999999999999999998642210000011111110
Q ss_pred CCCccccccccccCCC------CC-----CchHH--HHHHHHHcCC----CEEEEEecCCCCCHHHHHHHHHhhhcCeEe
Q 003038 700 RADSTEDSRNKRSRDE------QS-----CSYIE--RFAEAVSNNP----HRVFLIEDVEQADYCSQKGFKRAIESGRIV 762 (854)
Q Consensus 700 ~~~s~e~~~~~rl~~~------~g-----~g~~e--~L~eav~~~p----~~ViliDEieka~~~v~~~Ll~~le~G~l~ 762 (854)
.......|.--..+.| .| .+.++ .+.+.+...| ++||++|+++.+++..++.|++.||+..
T Consensus 64 ~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~-- 141 (325)
T PRK08699 64 HLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPP-- 141 (325)
T ss_pred HHHhcCCCCCEEEEecccccccccccCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCc--
Confidence 0000011110001111 11 13433 5666666544 6899999999999999999999999741
Q ss_pred cCCCceeecCCeEEEEecCCC
Q 003038 763 TSSGDEVSLGDAIVILSCESF 783 (854)
Q Consensus 763 d~~G~~v~~~~aIiIlTsn~f 783 (854)
.+++||++|...
T Consensus 142 ---------~~~~~Ilvth~~ 153 (325)
T PRK08699 142 ---------PQVVFLLVSHAA 153 (325)
T ss_pred ---------CCCEEEEEeCCh
Confidence 246677777543
No 165
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.63 E-value=1.7e-07 Score=106.58 Aligned_cols=142 Identities=15% Similarity=0.226 Sum_probs=93.3
Q ss_pred hhcCcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccc
Q 003038 615 ALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALS 694 (854)
Q Consensus 615 ~L~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s 694 (854)
.+. .+++-++.++.+..++.. ...++|+||+|+|||++|+.||..+.+. ..+.++++-
T Consensus 173 ~l~-d~~i~e~~le~l~~~L~~--------------------~~~iil~GppGtGKT~lA~~la~~l~~~-~~~~~v~~V 230 (459)
T PRK11331 173 ALN-DLFIPETTIETILKRLTI--------------------KKNIILQGPPGVGKTFVARRLAYLLTGE-KAPQRVNMV 230 (459)
T ss_pred Hhh-cccCCHHHHHHHHHHHhc--------------------CCCEEEECCCCCCHHHHHHHHHHHhcCC-cccceeeEE
Confidence 344 367777777777666552 1268899999999999999999998764 455667766
Q ss_pred cccCcCCCccccccccccCC--CCCC-chH------HHHHHHHHcCC--CEEEEEecCCCCCHH-HHHHHHHhhhcCe--
Q 003038 695 SFSSTRADSTEDSRNKRSRD--EQSC-SYI------ERFAEAVSNNP--HRVFLIEDVEQADYC-SQKGFKRAIESGR-- 760 (854)
Q Consensus 695 ~~~~~~~~s~e~~~~~rl~~--~~g~-g~~------e~L~eav~~~p--~~ViliDEieka~~~-v~~~Ll~~le~G~-- 760 (854)
.|. ..++...++. .|++ ||. -++....+++| ..||+||||++++.. ++..+++.||.+.
T Consensus 231 tFH-------psySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg 303 (459)
T PRK11331 231 QFH-------QSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRG 303 (459)
T ss_pred eec-------ccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccccccc
Confidence 665 3333333331 1222 332 13444555555 579999999999965 7999999999641
Q ss_pred ----E--e--cCCCceee-cCCeEEEEecCCCCC
Q 003038 761 ----I--V--TSSGDEVS-LGDAIVILSCESFSS 785 (854)
Q Consensus 761 ----l--~--d~~G~~v~-~~~aIiIlTsn~f~~ 785 (854)
+ . ...++.+. -.|..||.|.|.-|.
T Consensus 304 ~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Dr 337 (459)
T PRK11331 304 ENWSVPLTYSENDEERFYVPENVYIIGLMNTADR 337 (459)
T ss_pred cccceeeeccccccccccCCCCeEEEEecCcccc
Confidence 1 1 11122232 479999999998763
No 166
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.62 E-value=9.8e-08 Score=98.16 Aligned_cols=141 Identities=13% Similarity=0.218 Sum_probs=80.8
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..|+||+.++..+--+.. | .+.+||.||+|+|||.+|+.|+..|= .+..-.+-+..
T Consensus 3 ~dI~GQe~aKrAL~iAAa----G----------------~h~lLl~GppGtGKTmlA~~l~~lLP----~l~~~e~le~~ 58 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAA----G----------------GHHLLLIGPPGTGKTMLARRLPSLLP----PLTEEEALEVS 58 (206)
T ss_dssp CCSSSTHHHHHHHHHHHH----C----------------C--EEEES-CCCTHHHHHHHHHHCS------CCEECCESS-
T ss_pred hhhcCcHHHHHHHHHHHc----C----------------CCCeEEECCCCCCHHHHHHHHHHhCC----CCchHHHhhhc
Confidence 579999988887665544 2 24799999999999999999998772 22222222211
Q ss_pred CcCCCcc--ccccc--cccC-CCCCCchHHHH--------HHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecC
Q 003038 698 STRADST--EDSRN--KRSR-DEQSCSYIERF--------AEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTS 764 (854)
Q Consensus 698 ~~~~~s~--e~~~~--~rl~-~~~g~g~~e~L--------~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~ 764 (854)
.-.+... ..... .+.. .+...-....| ...|....+.|+||||+-..++.+.+.|++.+++|+++-.
T Consensus 59 ~i~s~~~~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~ 138 (206)
T PF01078_consen 59 KIYSVAGLGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTIS 138 (206)
T ss_dssp -S-TT---S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEE
T ss_pred cccccccCCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEE
Confidence 1000000 00000 0000 01100000111 1124445678999999999999999999999999999864
Q ss_pred -CCceeec-CCeEEEEecCC
Q 003038 765 -SGDEVSL-GDAIVILSCES 782 (854)
Q Consensus 765 -~G~~v~~-~~aIiIlTsn~ 782 (854)
.|..+.| .+-++|.|.|.
T Consensus 139 R~~~~~~~Pa~f~lv~a~NP 158 (206)
T PF01078_consen 139 RAGGSVTYPARFLLVAAMNP 158 (206)
T ss_dssp ETTEEEEEB--EEEEEEE-S
T ss_pred ECCceEEEecccEEEEEecc
Confidence 4566665 58899999985
No 167
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.62 E-value=6.2e-08 Score=108.77 Aligned_cols=137 Identities=11% Similarity=0.164 Sum_probs=96.0
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhC-CCCceEEEccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFG-SHNNFVSIALSSF 696 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg-~~~~~i~id~s~~ 696 (854)
..+||.+.....+.+.|.+. . | -.-.+|+.|++|+||+.+|++|...--. ...+||++||..|
T Consensus 78 ~~LIG~~~~~~~~~eqik~~----a-p-----------~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~ 141 (403)
T COG1221 78 DDLIGESPSLQELREQIKAY----A-P-----------SGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAY 141 (403)
T ss_pred hhhhccCHHHHHHHHHHHhh----C-C-----------CCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHh
Confidence 45799997777777766651 1 1 1236899999999999999999943323 3679999999999
Q ss_pred cCcCCCccccccccccCCCCCCchHH-HHHH-------HHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCce
Q 003038 697 SSTRADSTEDSRNKRSRDEQSCSYIE-RFAE-------AVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDE 768 (854)
Q Consensus 697 ~~~~~~s~e~~~~~rl~~~~g~g~~e-~L~e-------av~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~ 768 (854)
++ ....+.+. ||.+ .++. .+.......+|+|||..+++..|..|+++||+|.++-=.|..
T Consensus 142 ~e-------n~~~~eLF-----G~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~ 209 (403)
T COG1221 142 SE-------NLQEAELF-----GHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQ 209 (403)
T ss_pred Cc-------CHHHHHHh-----ccccceeecccCCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCC
Confidence 83 22222221 2221 1222 233344679999999999999999999999999999544444
Q ss_pred eecCCeEEEEecCC
Q 003038 769 VSLGDAIVILSCES 782 (854)
Q Consensus 769 v~~~~aIiIlTsn~ 782 (854)
+--.|+.+|+.++.
T Consensus 210 ~~~~dVRli~AT~~ 223 (403)
T COG1221 210 PRPVDVRLICATTE 223 (403)
T ss_pred CcCCCceeeecccc
Confidence 55567788887763
No 168
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.62 E-value=2.7e-07 Score=101.70 Aligned_cols=115 Identities=21% Similarity=0.335 Sum_probs=78.8
Q ss_pred ccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCC--ceEEEcccccc
Q 003038 620 VPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHN--NFVSIALSSFS 697 (854)
Q Consensus 620 V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~--~~i~id~s~~~ 697 (854)
++||++++..+...+... + ...++|+||+|+|||.+++.+++.+++... .++.++.+...
T Consensus 19 ~~g~~~~~~~l~~~i~~~-----------------~-~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 80 (319)
T PRK00440 19 IVGQEEIVERLKSYVKEK-----------------N-MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDER 80 (319)
T ss_pred hcCcHHHHHHHHHHHhCC-----------------C-CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccccc
Confidence 679999999888877531 1 124799999999999999999999987542 23333322111
Q ss_pred CcCCCccccccccccCCCCCCch-HHHHHHHHHc-----CCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeec
Q 003038 698 STRADSTEDSRNKRSRDEQSCSY-IERFAEAVSN-----NPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSL 771 (854)
Q Consensus 698 ~~~~~s~e~~~~~rl~~~~g~g~-~e~L~eav~~-----~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~ 771 (854)
+... .+.+.+..+. .+++||+|||+|.++.+.++.|+++++...
T Consensus 81 -------------------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~----------- 130 (319)
T PRK00440 81 -------------------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYS----------- 130 (319)
T ss_pred -------------------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCC-----------
Confidence 0111 1233333332 346799999999999999999999998531
Q ss_pred CCeEEEEecCC
Q 003038 772 GDAIVILSCES 782 (854)
Q Consensus 772 ~~aIiIlTsn~ 782 (854)
.+++|||+||.
T Consensus 131 ~~~~lIl~~~~ 141 (319)
T PRK00440 131 QNTRFILSCNY 141 (319)
T ss_pred CCCeEEEEeCC
Confidence 34678888864
No 169
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=1.7e-07 Score=101.58 Aligned_cols=118 Identities=15% Similarity=0.187 Sum_probs=76.1
Q ss_pred ceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCC----CchHH--HHHHHHHc
Q 003038 657 ETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQS----CSYIE--RFAEAVSN 730 (854)
Q Consensus 657 ~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g----~g~~e--~L~eav~~ 730 (854)
.+.+||.||+|+||+.+|.++|+.++.....- .+..+.. ..|.--..+.|.+ .+.++ .+.+.+..
T Consensus 19 ~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~---~c~~~~~------~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~ 89 (290)
T PRK05917 19 PSAIILHGQDLSNLSARAYELASLILKETSPE---AAYKISQ------KIHPDIHEFSPQGKGRLHSIETPRAIKKQIWI 89 (290)
T ss_pred CeeEeeECCCCCcHHHHHHHHHHHHhCCCCcc---HHHHHhc------CCCCCEEEEecCCCCCcCcHHHHHHHHHHHhh
Confidence 56899999999999999999999998643220 1110100 1111000111211 13333 45555555
Q ss_pred CC----CEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeecCCeEEEEecCCCCCC-CCCCCCCc
Q 003038 731 NP----HRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDAIVILSCESFSSR-SRACSPPT 794 (854)
Q Consensus 731 ~p----~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn~f~~~-s~~~sp~~ 794 (854)
.| ++|++||++|+++.+.+|+||+.||+ .-.+++|||.|+.-+.. ++..|.|+
T Consensus 90 ~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEE-----------Pp~~~~fiL~~~~~~~ll~TI~SRcq 147 (290)
T PRK05917 90 HPYESPYKIYIIHEADRMTLDAISAFLKVLED-----------PPQHGVIILTSAKPQRLPPTIRSRSL 147 (290)
T ss_pred CccCCCceEEEEechhhcCHHHHHHHHHHhhc-----------CCCCeEEEEEeCChhhCcHHHHhcce
Confidence 44 69999999999999999999999997 34678899988653333 34445553
No 170
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1.1e-07 Score=101.29 Aligned_cols=121 Identities=15% Similarity=0.107 Sum_probs=94.7
Q ss_pred CceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeCccc
Q 003038 229 NFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLGDLE 308 (854)
Q Consensus 229 n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfidel~ 308 (854)
-++|+||||+|||-+++.+|..+ |+.++.+..+.|.++|-||...-+++.+..++.+ .|||||+|||+
T Consensus 168 g~ll~GppGtGKTlla~~Vaa~m----------g~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~--~pciifmdeiD 235 (388)
T KOG0651|consen 168 GLLLYGPPGTGKTLLARAVAATM----------GVNFLKVVSSALVDKYIGESARLIRDMFRYAREV--IPCIIFMDEID 235 (388)
T ss_pred eeEEeCCCCCchhHHHHHHHHhc----------CCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhh--CceEEeehhhh
Confidence 46899999999999999999875 7889999999999999999999999999999998 78999999999
Q ss_pred cc-cccccccccccccchhhhHHHHHHHhhccc--CCCCceEEEEEecCHHHHHHhhccCCchhhh
Q 003038 309 WA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG--IGENARFWLMGIATFQSYMRCKSGHPSLETL 371 (854)
Q Consensus 309 ~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~--~~g~g~l~lIgatT~~ey~k~~~~~pale~~ 371 (854)
.+ |..-+ + .+...--+...-|++.+-+-. ..+ ++-+|-||+--. .-||+|-|-
T Consensus 236 AigGRr~s--e-~Ts~dreiqrTLMeLlnqmdgfd~l~--rVk~ImatNrpd-----tLdpaLlRp 291 (388)
T KOG0651|consen 236 AIGGRRFS--E-GTSSDREIQRTLMELLNQMDGFDTLH--RVKTIMATNRPD-----TLDPALLRP 291 (388)
T ss_pred hhccEEec--c-ccchhHHHHHHHHHHHHhhccchhcc--cccEEEecCCcc-----ccchhhcCC
Confidence 99 66532 1 122222345677777776632 333 699999997432 257888763
No 171
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.59 E-value=1.5e-07 Score=106.43 Aligned_cols=142 Identities=11% Similarity=0.109 Sum_probs=85.4
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..|.|.++.+..|...|..... ++.... ...-.+...+||+||+|+|||.+|+++|..+. ..|+++..+++.
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~---~~~~~~--~~g~~~p~gvLL~GppGtGKT~lakaia~~l~---~~~~~v~~~~l~ 193 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLK---HPELFE--EVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN---ATFIRVVGSELV 193 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhc---CHHHHH--hcCCCCCceEEEECCCCCCHHHHHHHHHHhCC---CCEEecchHHHH
Confidence 3578999999999888864311 100000 00001223588999999999999999999873 457776654332
Q ss_pred CcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEecCCCC-----------CHHHHHHHHHhhhcCeEecCCC
Q 003038 698 STRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQA-----------DYCSQKGFKRAIESGRIVTSSG 766 (854)
Q Consensus 698 ~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliDEieka-----------~~~v~~~Ll~~le~G~l~d~~G 766 (854)
..+ + +.+......+.+..+.+..+||||||||.+ ++.++..|.+.+..-.-.
T Consensus 194 -------~~~-----~-g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~---- 256 (364)
T TIGR01242 194 -------RKY-----I-GEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGF---- 256 (364)
T ss_pred -------HHh-----h-hHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCC----
Confidence 110 0 000012224555556666689999999986 456777777777531000
Q ss_pred ceeecCCeEEEEecCCCCCC
Q 003038 767 DEVSLGDAIVILSCESFSSR 786 (854)
Q Consensus 767 ~~v~~~~aIiIlTsn~f~~~ 786 (854)
....+.+||+|||..+..
T Consensus 257 --~~~~~v~vI~ttn~~~~l 274 (364)
T TIGR01242 257 --DPRGNVKVIAATNRPDIL 274 (364)
T ss_pred --CCCCCEEEEEecCChhhC
Confidence 112477899999865443
No 172
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.59 E-value=1.3e-07 Score=96.96 Aligned_cols=119 Identities=15% Similarity=0.263 Sum_probs=83.9
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCC--CCceEEEcccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGS--HNNFVSIALSS 695 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~--~~~~i~id~s~ 695 (854)
..|+|.++.|..+.-.... .-...++|.||||+|||+.+.+||+.|.|. .+.++.+|.|.
T Consensus 27 ~dIVGNe~tv~rl~via~~------------------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASd 88 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKE------------------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASD 88 (333)
T ss_pred HHhhCCHHHHHHHHHHHHc------------------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcc
Confidence 3479999888876544332 223489999999999999999999999984 34555555542
Q ss_pred ccCcCCCccccccccccCCCCCCchHH-HHHHH----HH--cCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCce
Q 003038 696 FSSTRADSTEDSRNKRSRDEQSCSYIE-RFAEA----VS--NNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDE 768 (854)
Q Consensus 696 ~~~~~~~s~e~~~~~rl~~~~g~g~~e-~L~ea----v~--~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~ 768 (854)
-- |-.... ++.-. |. ...|.||++||.|.|....|.+|.+.||
T Consensus 89 eR-------------------GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtME----------- 138 (333)
T KOG0991|consen 89 ER-------------------GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTME----------- 138 (333)
T ss_pred cc-------------------ccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHH-----------
Confidence 11 111111 11111 11 1347899999999999999999999998
Q ss_pred eecCCeEEEEecCCCC
Q 003038 769 VSLGDAIVILSCESFS 784 (854)
Q Consensus 769 v~~~~aIiIlTsn~f~ 784 (854)
+.-+.+.|+|.||.+.
T Consensus 139 iyS~ttRFalaCN~s~ 154 (333)
T KOG0991|consen 139 IYSNTTRFALACNQSE 154 (333)
T ss_pred HHcccchhhhhhcchh
Confidence 5667788999999764
No 173
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.59 E-value=1.1e-07 Score=111.72 Aligned_cols=138 Identities=16% Similarity=0.118 Sum_probs=82.8
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccC
Q 003038 619 KVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSS 698 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~ 698 (854)
.|+|++++...+...+...+........ ..++...+||+||+|+|||.+|++||... ..+|+.++.+++.
T Consensus 56 di~g~~~~k~~l~~~~~~l~~~~~~~~~------g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~- 125 (495)
T TIGR01241 56 DVAGIDEAKEELMEIVDFLKNPSKFTKL------GAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPFFSISGSDFV- 125 (495)
T ss_pred HhCCHHHHHHHHHHHHHHHHCHHHHHhc------CCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCeeeccHHHHH-
Confidence 4688888888777766543211000000 01223358999999999999999999976 4578888877654
Q ss_pred cCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEecCCCCCH--------------HHHHHHHHhhhcCeEecC
Q 003038 699 TRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQADY--------------CSQKGFKRAIESGRIVTS 764 (854)
Q Consensus 699 ~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliDEieka~~--------------~v~~~Ll~~le~G~l~d~ 764 (854)
+.+. +.+......+.+..+.+..+||||||||.+.+ .+.+.|+..|+. +.
T Consensus 126 ------~~~~------g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~--~~-- 189 (495)
T TIGR01241 126 ------EMFV------GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDG--FG-- 189 (495)
T ss_pred ------HHHh------cccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcc--cc--
Confidence 1110 00101222455556666668999999988632 244555555542 11
Q ss_pred CCceeecCCeEEEEecCCCCCCC
Q 003038 765 SGDEVSLGDAIVILSCESFSSRS 787 (854)
Q Consensus 765 ~G~~v~~~~aIiIlTsn~f~~~s 787 (854)
+-.+.+||.|||..+...
T Consensus 190 -----~~~~v~vI~aTn~~~~ld 207 (495)
T TIGR01241 190 -----TNTGVIVIAATNRPDVLD 207 (495)
T ss_pred -----CCCCeEEEEecCChhhcC
Confidence 113468888998755443
No 174
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.54 E-value=1.9e-07 Score=108.90 Aligned_cols=140 Identities=11% Similarity=0.157 Sum_probs=97.6
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccC
Q 003038 619 KVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSS 698 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~ 698 (854)
.++|...++..+...+.+.. +....+++.|++|+||+.+|++|.+..+....+|+.+||+.+.
T Consensus 139 ~lig~s~~~~~l~~~~~~~~----------------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~- 201 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLS----------------RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIP- 201 (469)
T ss_pred cceecCHHHHHHHHHHHHHh----------------ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCC-
Confidence 57888877777777665421 2234789999999999999999999887778899999999775
Q ss_pred cCCCccccccccccCC-CCC-C-chHHHHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeecCCeE
Q 003038 699 TRADSTEDSRNKRSRD-EQS-C-SYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDAI 775 (854)
Q Consensus 699 ~~~~s~e~~~~~rl~~-~~g-~-g~~e~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~~~aI 775 (854)
+......+.+ ..| + |....-...+.......+|||||+.+++.+|..|+++|++|.++...|......|+.
T Consensus 202 ------~~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~r 275 (469)
T PRK10923 202 ------KDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVR 275 (469)
T ss_pred ------HHHHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEE
Confidence 2211111111 001 1 111000111223445688999999999999999999999999987555444456889
Q ss_pred EEEecC
Q 003038 776 VILSCE 781 (854)
Q Consensus 776 iIlTsn 781 (854)
||+||+
T Consensus 276 ii~~~~ 281 (469)
T PRK10923 276 IIAATH 281 (469)
T ss_pred EEEeCC
Confidence 999886
No 175
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.53 E-value=5.9e-07 Score=99.75 Aligned_cols=51 Identities=16% Similarity=0.186 Sum_probs=43.8
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHH
Q 003038 619 KVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
.|+|+++++..+.+.+.....|...+ .-.++|+||+|+|||++|++||+.+
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~------------r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEER------------KQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCC------------CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999998877665432 2368999999999999999999987
No 176
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.53 E-value=3.9e-07 Score=104.76 Aligned_cols=124 Identities=15% Similarity=0.132 Sum_probs=80.9
Q ss_pred HHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhh-
Q 003038 218 VIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCL- 296 (854)
Q Consensus 218 v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~- 296 (854)
+...+..++..+++|+||||||||++++.++... +..++.++.... . ...++++++.+....
T Consensus 27 L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~----------~~~~~~l~a~~~---~----~~~ir~ii~~~~~~~~ 89 (413)
T PRK13342 27 LRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT----------DAPFEALSAVTS---G----VKDLREVIEEARQRRS 89 (413)
T ss_pred HHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEecccc---c----HHHHHHHHHHHHHhhh
Confidence 4444556677799999999999999999999864 345666654321 1 123344444443211
Q ss_pred -CCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhccc-CCCCceEEEEEecCHHHHHHhhccCCchhhhhc
Q 003038 297 -GRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG-IGENARFWLMGIATFQSYMRCKSGHPSLETLWS 373 (854)
Q Consensus 297 -~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~ 373 (854)
+++.||||||+|.+ ..... .|++. ..+ .+.+||+||...+.+ .+|+|.+ |
T Consensus 90 ~g~~~vL~IDEi~~l~~~~q~--------------------~LL~~le~~--~iilI~att~n~~~~---l~~aL~S--R 142 (413)
T PRK13342 90 AGRRTILFIDEIHRFNKAQQD--------------------ALLPHVEDG--TITLIGATTENPSFE---VNPALLS--R 142 (413)
T ss_pred cCCceEEEEechhhhCHHHHH--------------------HHHHHhhcC--cEEEEEeCCCChhhh---ccHHHhc--c
Confidence 46789999999999 43210 13322 223 699999999877643 5788888 6
Q ss_pred cCCCCCCCchHH
Q 003038 374 LHPLTIPAGSLS 385 (854)
Q Consensus 374 ~~~v~i~~~sl~ 385 (854)
++.+.++..+..
T Consensus 143 ~~~~~~~~ls~e 154 (413)
T PRK13342 143 AQVFELKPLSEE 154 (413)
T ss_pred ceeeEeCCCCHH
Confidence 677777665533
No 177
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=3.8e-07 Score=99.18 Aligned_cols=142 Identities=15% Similarity=0.130 Sum_probs=87.7
Q ss_pred ccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCC
Q 003038 622 WQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRA 701 (854)
Q Consensus 622 GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~ 701 (854)
+|..++..+..++.+.| -.+.+||.|| +||+.+|+.+|+.++.....-. -.|..+..++.
T Consensus 6 ~q~~~~~~L~~~~~~~r-----------------l~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~-~~Cg~C~~C~~ 65 (290)
T PRK07276 6 KQPKVFQRFQTILEQDR-----------------LNHAYLFSGD--FASFEMALFLAQSLFCEQKEGV-LPCGHCRSCRL 65 (290)
T ss_pred HHHHHHHHHHHHHHcCC-----------------cceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCC-CCCCCCHHHHH
Confidence 58888888888887643 3568999996 6899999999999986432100 01111111100
Q ss_pred CccccccccccCCCCCC--chHH--HHHHHHHc----CCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeecCC
Q 003038 702 DSTEDSRNKRSRDEQSC--SYIE--RFAEAVSN----NPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGD 773 (854)
Q Consensus 702 ~s~e~~~~~rl~~~~g~--g~~e--~L~eav~~----~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~~~ 773 (854)
.....|.--..+.|.|. +.++ .+.+.+.. .+++||+||++|+++....|+||+.+|+ .-.+
T Consensus 66 i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEE-----------Pp~~ 134 (290)
T PRK07276 66 IEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEE-----------PQSE 134 (290)
T ss_pred HhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcC-----------CCCC
Confidence 00011211111223332 3433 45555544 4479999999999999999999999997 2357
Q ss_pred eEEEEecCCC-CCCCCCCCCCc
Q 003038 774 AIVILSCESF-SSRSRACSPPT 794 (854)
Q Consensus 774 aIiIlTsn~f-~~~s~~~sp~~ 794 (854)
++|||+|+.- .-.++.-|.|+
T Consensus 135 t~~iL~t~~~~~lLpTI~SRcq 156 (290)
T PRK07276 135 IYIFLLTNDENKVLPTIKSRTQ 156 (290)
T ss_pred eEEEEEECChhhCchHHHHcce
Confidence 8899988543 34444455554
No 178
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.52 E-value=2.4e-07 Score=102.91 Aligned_cols=143 Identities=14% Similarity=0.077 Sum_probs=81.6
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHh------CCCCceEEE
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVF------GSHNNFVSI 691 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lf------g~~~~~i~i 691 (854)
..|+||++++..+.-+.... ..+.+||.|++|+|||++||+||..|- +.+-.+.++
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~------------------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDP------------------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred HHhCCHHHHHHHHHHHHhcc------------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 35799999998777654321 135799999999999999999999982 111112222
Q ss_pred ccccccCcCCCccccccccc---cCC-CCC------CchHHHHHHH------------HHcCCCEEEEEecCCCCCHHHH
Q 003038 692 ALSSFSSTRADSTEDSRNKR---SRD-EQS------CSYIERFAEA------------VSNNPHRVFLIEDVEQADYCSQ 749 (854)
Q Consensus 692 d~s~~~~~~~~s~e~~~~~r---l~~-~~g------~g~~e~L~ea------------v~~~p~~ViliDEieka~~~v~ 749 (854)
.+. ......+... ...+ ++. |.+ .|.. .+... +.+....++++|||+.+++.+|
T Consensus 70 ~~~--~~~~~~~~~~-~~~~~~p~~~~p~~~t~~~l~G~~-d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q 145 (334)
T PRK13407 70 EDC--PEWAHVSSTT-MIERPTPVVDLPLGVTEDRVVGAL-DIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIV 145 (334)
T ss_pred cCC--cccccccCCc-ccccCCccccCCCCCCcceeecch-hhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHH
Confidence 110 0000000000 0000 000 000 0110 11111 1122346999999999999999
Q ss_pred HHHHHhhhcCeEec-CCCceeecC-CeEEEEecCC
Q 003038 750 KGFKRAIESGRIVT-SSGDEVSLG-DAIVILSCES 782 (854)
Q Consensus 750 ~~Ll~~le~G~l~d-~~G~~v~~~-~aIiIlTsn~ 782 (854)
+.|+++|++|.++- ..|....+. ..++|.|.|.
T Consensus 146 ~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP 180 (334)
T PRK13407 146 DLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNP 180 (334)
T ss_pred HHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCc
Confidence 99999999998542 345455553 4566667664
No 179
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.52 E-value=7.1e-07 Score=85.07 Aligned_cols=91 Identities=15% Similarity=0.124 Sum_probs=63.4
Q ss_pred cHHHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHH---HHH
Q 003038 211 RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQR---VEE 287 (854)
Q Consensus 211 r~~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~r---l~~ 287 (854)
++..+..+...+.+...++++|+||||+|||++++.++..+.. .+..++.++............... ...
T Consensus 3 ~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (151)
T cd00009 3 QEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFR-------PGAPFLYLNASDLLEGLVVAELFGHFLVRL 75 (151)
T ss_pred hHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhc-------CCCCeEEEehhhhhhhhHHHHHhhhhhHhH
Confidence 6778888888888777889999999999999999999988752 356777777766655422221111 111
Q ss_pred HHHHHHhhhCCCeEEEeCccccc
Q 003038 288 IKNLVRSCLGRGIVLNLGDLEWA 310 (854)
Q Consensus 288 l~~~~~~~~~~~~ILfidel~~l 310 (854)
....... ..+.+|+|||++.+
T Consensus 76 ~~~~~~~--~~~~~lilDe~~~~ 96 (151)
T cd00009 76 LFELAEK--AKPGVLFIDEIDSL 96 (151)
T ss_pred HHHhhcc--CCCeEEEEeChhhh
Confidence 1111222 35789999999887
No 180
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.52 E-value=3.8e-07 Score=110.71 Aligned_cols=107 Identities=17% Similarity=0.239 Sum_probs=69.5
Q ss_pred cccccHHHHHH---HHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccc
Q 003038 619 KVPWQKDTVYD---IANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSS 695 (854)
Q Consensus 619 ~V~GQ~~av~~---Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~ 695 (854)
.++||++++.. +...+.. +...+++|+||+|+|||++|+++|+.+ ...|+.++.+.
T Consensus 29 d~vGQe~ii~~~~~L~~~i~~------------------~~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~~lna~~ 87 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIKA------------------DRVGSLILYGPPGVGKTTLARIIANHT---RAHFSSLNAVL 87 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHhc------------------CCCceEEEECCCCCCHHHHHHHHHHHh---cCcceeehhhh
Confidence 47899998853 3333321 224589999999999999999999876 24566665431
Q ss_pred ccCcCCCccccccccccCCCCCCchHHHHHHHHH-cCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEe
Q 003038 696 FSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVS-NNPHRVFLIEDVEQADYCSQKGFKRAIESGRIV 762 (854)
Q Consensus 696 ~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~-~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~ 762 (854)
.. ++.+. ...+...+.+. ...+.|+||||||.++...|+.|+..+++|.+.
T Consensus 88 ~~-----------i~dir-----~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~Ii 139 (725)
T PRK13341 88 AG-----------VKDLR-----AEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGTIT 139 (725)
T ss_pred hh-----------hHHHH-----HHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCceEE
Confidence 11 00000 00011111121 234679999999999999999999999987543
No 181
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.2e-07 Score=115.62 Aligned_cols=128 Identities=13% Similarity=0.167 Sum_probs=92.5
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeC
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLG 305 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfid 305 (854)
..|.++++||||+|||.++++||....+|. +..-|+.-+.....+.+.||.|+.|+-++++++.. .|.|+|+|
T Consensus 298 pPrgvL~~GppGTGkTl~araLa~~~s~~~-----~kisffmrkgaD~lskwvgEaERqlrllFeeA~k~--qPSIIffd 370 (1080)
T KOG0732|consen 298 PPRGVLFHGPPGTGKTLMARALAAACSRGN-----RKISFFMRKGADCLSKWVGEAERQLRLLFEEAQKT--QPSIIFFD 370 (1080)
T ss_pred CCcceeecCCCCCchhHHHHhhhhhhcccc-----cccchhhhcCchhhccccCcHHHHHHHHHHHHhcc--CceEEecc
Confidence 356699999999999999999998876653 55566666666777789999999999999999987 89999999
Q ss_pred ccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchhhh
Q 003038 306 DLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLETL 371 (854)
Q Consensus 306 el~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale~~ 371 (854)
||.=| ..+++--++.- ...+..+-.|+-+--++|.+.+||||....| .||+|.|-
T Consensus 371 eIdGlapvrSskqEqih------~SIvSTLLaLmdGldsRgqVvvigATnRpda-----~dpaLRRP 426 (1080)
T KOG0732|consen 371 EIDGLAPVRSSKQEQIH------ASIVSTLLALMDGLDSRGQVVVIGATNRPDA-----IDPALRRP 426 (1080)
T ss_pred ccccccccccchHHHhh------hhHHHHHHHhccCCCCCCceEEEcccCCccc-----cchhhcCC
Confidence 99876 44432101100 0123333334422112347999999998886 47999874
No 182
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.51 E-value=6.8e-07 Score=107.00 Aligned_cols=154 Identities=12% Similarity=0.088 Sum_probs=93.6
Q ss_pred cHHHHHHHHHHhhcc----CcCCc-eeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccccccccc---c-----
Q 003038 211 RNEDVMYVIENLMSK----RKRNF-VVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHM---N----- 277 (854)
Q Consensus 211 r~~ei~~v~~~L~r~----~k~n~-vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~---~----- 277 (854)
||+|+++|...|..- ..+|+ .|+|+||+|||++|+.+++.+...---..+..+.++.++...+... |
T Consensus 760 REeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~q 839 (1164)
T PTZ00112 760 REKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYK 839 (1164)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHH
Confidence 999999999887642 33455 4899999999999999998875321011233467777776433211 1
Q ss_pred --------hH-HHHHHHHHHHHHHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcc-cCCCCce
Q 003038 278 --------RV-EVEQRVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVC-GIGENAR 346 (854)
Q Consensus 278 --------rg-e~E~rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~-~~~g~g~ 346 (854)
+| ...+.+..++..+.......+||+|||||.| .... .. +-+|+. +....++
T Consensus 840 qL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~Q--------------DV---LYnLFR~~~~s~SK 902 (1164)
T PTZ00112 840 QLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQ--------------KV---LFTLFDWPTKINSK 902 (1164)
T ss_pred HHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHH--------------HH---HHHHHHHhhccCCe
Confidence 11 2234566666666432133569999999999 6422 12 223332 1111236
Q ss_pred EEEEEecCHHHHHHhhccCCchhhhhccCCCCCCCch
Q 003038 347 FWLMGIATFQSYMRCKSGHPSLETLWSLHPLTIPAGS 383 (854)
Q Consensus 347 l~lIgatT~~ey~k~~~~~pale~~~~~~~v~i~~~s 383 (854)
|.+||+++.-.+.. ..+|.+..++++..|..++.+
T Consensus 903 LiLIGISNdlDLpe--rLdPRLRSRLg~eeIvF~PYT 937 (1164)
T PTZ00112 903 LVLIAISNTMDLPE--RLIPRCRSRLAFGRLVFSPYK 937 (1164)
T ss_pred EEEEEecCchhcch--hhhhhhhhccccccccCCCCC
Confidence 99999998666544 236777773333446665544
No 183
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.51 E-value=2.2e-07 Score=106.14 Aligned_cols=137 Identities=14% Similarity=0.221 Sum_probs=102.9
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..|+|...++..+...+.+. .+....+|+.|.+|+||..+|+++-+.--..+.+||+|||....
T Consensus 245 ~~Iig~S~~m~~~~~~akr~----------------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 245 DDIIGESPAMLRVLELAKRI----------------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred hhhccCCHHHHHHHHHHHhh----------------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 46899987666655555443 13456889999999999999999998776668999999999877
Q ss_pred CcCCCccccccccccCCCCCCchHH-HHHHHHHc-CC-------CEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCce
Q 003038 698 STRADSTEDSRNKRSRDEQSCSYIE-RFAEAVSN-NP-------HRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDE 768 (854)
Q Consensus 698 ~~~~~s~e~~~~~rl~~~~g~g~~e-~L~eav~~-~p-------~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~ 768 (854)
+.---+.|. ||.. .++.|.+. +| +.-+|+|||--++...|..||++++++.+.-=.|.+
T Consensus 309 -------e~LlESELF-----Gye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~ 376 (560)
T COG3829 309 -------ETLLESELF-----GYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTK 376 (560)
T ss_pred -------HHHHHHHHh-----CcCCccccccccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCC
Confidence 322222222 4443 46777765 33 456999999999999999999999999998655555
Q ss_pred eecCCeEEEEecCC
Q 003038 769 VSLGDAIVILSCES 782 (854)
Q Consensus 769 v~~~~aIiIlTsn~ 782 (854)
.--.|..||-++|.
T Consensus 377 ~~~vDVRIIAATN~ 390 (560)
T COG3829 377 PIPVDVRIIAATNR 390 (560)
T ss_pred ceeeEEEEEeccCc
Confidence 55567789999984
No 184
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.50 E-value=5.2e-07 Score=105.04 Aligned_cols=132 Identities=13% Similarity=0.095 Sum_probs=78.0
Q ss_pred cccccHHHHHHHHHHHHHh--------hcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCC------
Q 003038 619 KVPWQKDTVYDIANTVLKC--------RSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGS------ 684 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~--------rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~------ 684 (854)
.|.|.+..+..|..+|..- +.|+. |..-+||+||||+|||.+|+++|..+...
T Consensus 183 dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~-------------~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~ 249 (512)
T TIGR03689 183 DIGGLDSQIEQIRDAVELPFLHPELYREYDLK-------------PPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETG 249 (512)
T ss_pred HcCChHHHHHHHHHHHHHHhhCHHHHHhccCC-------------CCcceEEECCCCCcHHHHHHHHHHhhccccccccC
Confidence 3568888888888887531 22332 23358999999999999999999987321
Q ss_pred -CCceEEEccccccCcCCCccccccccccCCCCCCchHH----HHHHHHHc----CCCEEEEEecCCCCC--------H-
Q 003038 685 -HNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIE----RFAEAVSN----NPHRVFLIEDVEQAD--------Y- 746 (854)
Q Consensus 685 -~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e----~L~eav~~----~p~~ViliDEieka~--------~- 746 (854)
...|+.+..+++. .... |-.+ .+++..++ +..+||||||||..- .
T Consensus 250 ~~~~fl~v~~~eLl------------~kyv-----Gete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d 312 (512)
T TIGR03689 250 DKSYFLNIKGPELL------------NKYV-----GETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSD 312 (512)
T ss_pred CceeEEeccchhhc------------cccc-----chHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccch
Confidence 1223333322211 0000 2111 33344433 356899999999752 1
Q ss_pred ---HHHHHHHHhhhcCeEecCCCceeecCCeEEEEecCCCCCCCCC
Q 003038 747 ---CSQKGFKRAIESGRIVTSSGDEVSLGDAIVILSCESFSSRSRA 789 (854)
Q Consensus 747 ---~v~~~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn~f~~~s~~ 789 (854)
.+.+.|+..|+. + -+..+.+||+|||..+....+
T Consensus 313 ~e~~il~~LL~~LDg--l-------~~~~~ViVI~ATN~~d~LDpA 349 (512)
T TIGR03689 313 VETTVVPQLLSELDG--V-------ESLDNVIVIGASNREDMIDPA 349 (512)
T ss_pred HHHHHHHHHHHHhcc--c-------ccCCceEEEeccCChhhCCHh
Confidence 234566666652 1 123578999999975544333
No 185
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.49 E-value=7.4e-07 Score=101.55 Aligned_cols=152 Identities=14% Similarity=0.206 Sum_probs=93.3
Q ss_pred cHHHHHHHHHHhhcc----CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccc-----------
Q 003038 211 RNEDVMYVIENLMSK----RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRH----------- 275 (854)
Q Consensus 211 r~~ei~~v~~~L~r~----~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~----------- 275 (854)
|++|++++...|..- ..+|++|+|+||+|||++++.++..+.... .+..++.++......
T Consensus 35 Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~-----~~~~~v~in~~~~~~~~~~~~~i~~~ 109 (394)
T PRK00411 35 REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA-----VKVVYVYINCQIDRTRYAIFSEIARQ 109 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc-----CCcEEEEEECCcCCCHHHHHHHHHHH
Confidence 999999999998432 446899999999999999999998875532 245666666532211
Q ss_pred --c----chH-HHHHHHHHHHHHHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceE
Q 003038 276 --M----NRV-EVEQRVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARF 347 (854)
Q Consensus 276 --~----~rg-e~E~rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l 347 (854)
+ .+| .+++-+..+.+.+... +.++||+|||++.+ ..... .....+.+++....+. .+
T Consensus 110 l~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~viviDE~d~l~~~~~~-------------~~l~~l~~~~~~~~~~-~v 174 (394)
T PRK00411 110 LFGHPPPSSGLSFDELFDKIAEYLDER-DRVLIVALDDINYLFEKEGN-------------DVLYSLLRAHEEYPGA-RI 174 (394)
T ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhc-CCEEEEEECCHhHhhccCCc-------------hHHHHHHHhhhccCCC-eE
Confidence 0 111 2344445555555543 56799999999999 43221 1222333333211121 58
Q ss_pred EEEEecCHHHHHHhhccCCchhhhhccCCCCCCCchH
Q 003038 348 WLMGIATFQSYMRCKSGHPSLETLWSLHPLTIPAGSL 384 (854)
Q Consensus 348 ~lIgatT~~ey~k~~~~~pale~~~~~~~v~i~~~sl 384 (854)
.+|++++....... .+|.+.+.++.+.|.+++.+.
T Consensus 175 ~vI~i~~~~~~~~~--l~~~~~s~~~~~~i~f~py~~ 209 (394)
T PRK00411 175 GVIGISSDLTFLYI--LDPRVKSVFRPEEIYFPPYTA 209 (394)
T ss_pred EEEEEECCcchhhh--cCHHHHhcCCcceeecCCCCH
Confidence 89999886655543 466666633334556665443
No 186
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.49 E-value=3.4e-07 Score=105.03 Aligned_cols=136 Identities=15% Similarity=0.174 Sum_probs=84.9
Q ss_pred cccccHHHHHHHHHHHHHh--------hcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEE
Q 003038 619 KVPWQKDTVYDIANTVLKC--------RSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVS 690 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~--------rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~ 690 (854)
.|.|.+..+..|..++..- ..|+. +...+||+||+|+|||.+|+++|..+ ...|++
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~-------------~p~gVLL~GPPGTGKT~LAraIA~el---~~~fi~ 247 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIK-------------PPKGVILYGPPGTGKTLLAKAVANET---SATFLR 247 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCC-------------CCcEEEEECCCCCCHHHHHHHHHHhh---CCCEEE
Confidence 3588899999998888532 12322 22357889999999999999999987 346888
Q ss_pred EccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEecCCCC-----------CHHHHHHHHHhhhcC
Q 003038 691 IALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQA-----------DYCSQKGFKRAIESG 759 (854)
Q Consensus 691 id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliDEieka-----------~~~v~~~Ll~~le~G 759 (854)
+..+++. ..+ + +.+......+++..+.+..+||||||||.. +.+++..+++.+..=
T Consensus 248 V~~seL~-------~k~-----~-Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~L 314 (438)
T PTZ00361 248 VVGSELI-------QKY-----L-GDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQL 314 (438)
T ss_pred Eecchhh-------hhh-----c-chHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHH
Confidence 8776554 111 1 000011224555556666789999999864 234556666555420
Q ss_pred eEecCCCceeecCCeEEEEecCCCCCCCCC
Q 003038 760 RIVTSSGDEVSLGDAIVILSCESFSSRSRA 789 (854)
Q Consensus 760 ~l~d~~G~~v~~~~aIiIlTsn~f~~~s~~ 789 (854)
|+. -.-.+.+||++||..+....+
T Consensus 315 ---dg~---~~~~~V~VI~ATNr~d~LDpa 338 (438)
T PTZ00361 315 ---DGF---DSRGDVKVIMATNRIESLDPA 338 (438)
T ss_pred ---hhh---cccCCeEEEEecCChHHhhHH
Confidence 000 012367899999976555443
No 187
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.47 E-value=3.9e-07 Score=109.95 Aligned_cols=129 Identities=17% Similarity=0.175 Sum_probs=81.4
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHh----------CCC--
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVF----------GSH-- 685 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lf----------g~~-- 685 (854)
..|+||++++..+.-+... + ..+.+||.|++|+|||.+|++|+..+- ++.
T Consensus 4 ~~ivGq~~~~~al~~~av~-------~-----------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~ 65 (633)
T TIGR02442 4 TAIVGQEDLKLALLLNAVD-------P-----------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPD 65 (633)
T ss_pred chhcChHHHHHHHHHHhhC-------C-----------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCC
Confidence 4689999988766544332 1 246799999999999999999999882 210
Q ss_pred --------------------CceEEEccccccCcCCCccccccccccCCCCCCchHHHHHH------------HHHcCCC
Q 003038 686 --------------------NNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAE------------AVSNNPH 733 (854)
Q Consensus 686 --------------------~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~e------------av~~~p~ 733 (854)
.+|+.+.++.. ..+++ |.. .+.. .+.....
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t------------~~~l~-----G~~-d~~~~l~~g~~~~~~G~L~~A~~ 127 (633)
T TIGR02442 66 DPEEWCEECRRKYRPSEQRPVPFVNLPLGAT------------EDRVV-----GSL-DIERALREGEKAFQPGLLAEAHR 127 (633)
T ss_pred CccccChhhhhcccccccCCCCeeeCCCCCc------------HHHcC-----Ccc-cHHHHhhcCCeeecCcceeecCC
Confidence 11111111100 00111 111 0111 1223345
Q ss_pred EEEEEecCCCCCHHHHHHHHHhhhcCeEec-CCCceeec-CCeEEEEecCC
Q 003038 734 RVFLIEDVEQADYCSQKGFKRAIESGRIVT-SSGDEVSL-GDAIVILSCES 782 (854)
Q Consensus 734 ~ViliDEieka~~~v~~~Ll~~le~G~l~d-~~G~~v~~-~~aIiIlTsn~ 782 (854)
.|+|||||+++++.+|+.|+++|++|.++- ..|....+ .+.++|.|+|.
T Consensus 128 GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np 178 (633)
T TIGR02442 128 GILYIDEVNLLDDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNP 178 (633)
T ss_pred CeEEeChhhhCCHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCC
Confidence 799999999999999999999999996542 23444444 46778888773
No 188
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.46 E-value=5.5e-07 Score=110.59 Aligned_cols=111 Identities=15% Similarity=0.253 Sum_probs=76.3
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCC-------CCceEE
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGS-------HNNFVS 690 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~-------~~~~i~ 690 (854)
..|+||++.+..+...+.+. ....++|+||+|||||.+++.||+.+... ...++.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~------------------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~ 243 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRR------------------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS 243 (731)
T ss_pred CcccCcHHHHHHHHHHHhcC------------------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence 35799998888777555331 12367899999999999999999987432 245666
Q ss_pred EccccccCcCCCccccccccccCCCCCC--chHHHHHHH---HHcCCCEEEEEecCCCCC---------HHHHHHHHHhh
Q 003038 691 IALSSFSSTRADSTEDSRNKRSRDEQSC--SYIERFAEA---VSNNPHRVFLIEDVEQAD---------YCSQKGFKRAI 756 (854)
Q Consensus 691 id~s~~~~~~~~s~e~~~~~rl~~~~g~--g~~e~L~ea---v~~~p~~ViliDEieka~---------~~v~~~Ll~~l 756 (854)
+|++... .+..| .+.++|... +++++..|+||||||.+- .++++.|+..+
T Consensus 244 ~~~~~l~----------------a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l 307 (731)
T TIGR02639 244 LDMGSLL----------------AGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL 307 (731)
T ss_pred ecHHHHh----------------hhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH
Confidence 6655332 11112 233344444 345667899999999663 56899999999
Q ss_pred hcCeEe
Q 003038 757 ESGRIV 762 (854)
Q Consensus 757 e~G~l~ 762 (854)
++|.++
T Consensus 308 ~~g~i~ 313 (731)
T TIGR02639 308 SSGKLR 313 (731)
T ss_pred hCCCeE
Confidence 988776
No 189
>CHL00176 ftsH cell division protein; Validated
Probab=98.46 E-value=5.7e-07 Score=107.86 Aligned_cols=136 Identities=13% Similarity=0.113 Sum_probs=81.9
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccC
Q 003038 619 KVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSS 698 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~ 698 (854)
.|+|.+++...+...+...+..-.... . -.++...+||+||+|+|||.+|++||... ..+|+.+++++|.
T Consensus 184 dv~G~~~~k~~l~eiv~~lk~~~~~~~-~-----g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p~i~is~s~f~- 253 (638)
T CHL00176 184 DIAGIEEAKEEFEEVVSFLKKPERFTA-V-----GAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVPFFSISGSEFV- 253 (638)
T ss_pred hccChHHHHHHHHHHHHHHhCHHHHhh-c-----cCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeeeccHHHHH-
Confidence 477888888777776644322111000 0 01223358999999999999999999976 4678888888765
Q ss_pred cCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEecCCCCC-----------HH---HHHHHHHhhhcCeEecC
Q 003038 699 TRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQAD-----------YC---SQKGFKRAIESGRIVTS 764 (854)
Q Consensus 699 ~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliDEieka~-----------~~---v~~~Ll~~le~G~l~d~ 764 (854)
+.+. +.+......+.+..+.+..+||||||||.+. .. +.+.|+..|+. . .
T Consensus 254 ------~~~~------g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg-~-~-- 317 (638)
T CHL00176 254 ------EMFV------GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDG-F-K-- 317 (638)
T ss_pred ------HHhh------hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcc-c-c--
Confidence 2111 0011112245555666677999999999773 33 34444444442 1 1
Q ss_pred CCceeecCCeEEEEecCCCCC
Q 003038 765 SGDEVSLGDAIVILSCESFSS 785 (854)
Q Consensus 765 ~G~~v~~~~aIiIlTsn~f~~ 785 (854)
.-.+.+||.+||..+.
T Consensus 318 -----~~~~ViVIaaTN~~~~ 333 (638)
T CHL00176 318 -----GNKGVIVIAATNRVDI 333 (638)
T ss_pred -----CCCCeeEEEecCchHh
Confidence 1135788889986443
No 190
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.44 E-value=1.9e-06 Score=97.18 Aligned_cols=153 Identities=13% Similarity=0.227 Sum_probs=92.3
Q ss_pred cHHHHHHHHHHhhc----cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccc-----------
Q 003038 211 RNEDVMYVIENLMS----KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRH----------- 275 (854)
Q Consensus 211 r~~ei~~v~~~L~r----~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~----------- 275 (854)
|++|++.+...|.. .+.+|++|+||||+|||++++.++..+.... +..=....++.++......
T Consensus 20 Re~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~-~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 98 (365)
T TIGR02928 20 RDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAA-EDRDVRVVTVYVNCQILDTLYQVLVELANQ 98 (365)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHh-hccCCceEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999998863 3557899999999999999999998765310 1000014566666432211
Q ss_pred ----c----chH-HHHHHHHHHHHHHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhccc-CCCC
Q 003038 276 ----M----NRV-EVEQRVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG-IGEN 344 (854)
Q Consensus 276 ----~----~rg-e~E~rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~g~ 344 (854)
+ .+| .+++.++.+++.+... +.++||+|||++.+ +.... ....+.++... ....
T Consensus 99 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~vlvIDE~d~L~~~~~~--------------~L~~l~~~~~~~~~~~ 163 (365)
T TIGR02928 99 LRGSGEEVPTTGLSTSEVFRRLYKELNER-GDSLIIVLDEIDYLVGDDDD--------------LLYQLSRARSNGDLDN 163 (365)
T ss_pred HhhcCCCCCCCCCCHHHHHHHHHHHHHhc-CCeEEEEECchhhhccCCcH--------------HHHhHhccccccCCCC
Confidence 0 011 1344456666666544 56899999999999 54321 22233333111 1111
Q ss_pred ceEEEEEecCHHHHHHhhccCCchhhhhcc--CCCCCCCch
Q 003038 345 ARFWLMGIATFQSYMRCKSGHPSLETLWSL--HPLTIPAGS 383 (854)
Q Consensus 345 g~l~lIgatT~~ey~k~~~~~pale~~~~~--~~v~i~~~s 383 (854)
..+.+|++++.-.+.. .-+|.+.+ +| +.|.+++.+
T Consensus 164 ~~v~lI~i~n~~~~~~--~l~~~~~s--~~~~~~i~f~p~~ 200 (365)
T TIGR02928 164 AKVGVIGISNDLKFRE--NLDPRVKS--SLCEEEIIFPPYD 200 (365)
T ss_pred CeEEEEEEECCcchHh--hcCHHHhc--cCCcceeeeCCCC
Confidence 3699999997655543 23566655 45 345666554
No 191
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.44 E-value=6.6e-07 Score=103.94 Aligned_cols=140 Identities=11% Similarity=0.133 Sum_probs=95.2
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccC
Q 003038 619 KVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSS 698 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~ 698 (854)
.++|+..++..+...+.+... ....+++.|++|+||+.+|+.+.........+|+.+||..+.+
T Consensus 144 ~ii~~S~~~~~~~~~~~~~a~----------------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~ 207 (457)
T PRK11361 144 HILTNSPAMMDICKDTAKIAL----------------SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPE 207 (457)
T ss_pred ceecccHHHhHHHHHHHHHcC----------------CCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCH
Confidence 488888888777776665422 2347899999999999999999887766778999999997752
Q ss_pred cCCCccccccccccCCC-CC-C-chHHHHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeecCCeE
Q 003038 699 TRADSTEDSRNKRSRDE-QS-C-SYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDAI 775 (854)
Q Consensus 699 ~~~~s~e~~~~~rl~~~-~g-~-g~~e~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~~~aI 775 (854)
....+.+.+. .+ + |-...-...+......+||||||+++++.+|..|+++|+++.+.--.|...--.|+.
T Consensus 208 -------~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~r 280 (457)
T PRK11361 208 -------SLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIR 280 (457)
T ss_pred -------HHHHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceE
Confidence 1111111110 00 0 000000112233456799999999999999999999999998775434333345778
Q ss_pred EEEecC
Q 003038 776 VILSCE 781 (854)
Q Consensus 776 iIlTsn 781 (854)
||+||+
T Consensus 281 ii~~t~ 286 (457)
T PRK11361 281 IIAATN 286 (457)
T ss_pred EEEeCC
Confidence 999886
No 192
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=4.8e-07 Score=96.26 Aligned_cols=126 Identities=10% Similarity=0.029 Sum_probs=79.5
Q ss_pred cceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCC--CchHH--HHHHHHHc-
Q 003038 656 EETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQS--CSYIE--RFAEAVSN- 730 (854)
Q Consensus 656 p~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g--~g~~e--~L~eav~~- 730 (854)
+.+.+||+||.|+||..+|.++|+.++..... -.|..+.++.......|.--..+.|.+ .+.++ .+.+.+..
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~---~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~ 82 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKAN---GFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRP 82 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCC---CCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccC
Confidence 45689999999999999999999999865321 012222211111111121111111221 24443 45554433
Q ss_pred ----CCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeecCCeEEEEecCCC-CCCCCCCCCCcc
Q 003038 731 ----NPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDAIVILSCESF-SSRSRACSPPTK 795 (854)
Q Consensus 731 ----~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn~f-~~~s~~~sp~~~ 795 (854)
.+++|++|+++|+++....|+||+.+|+ .-.+++|||+|+.- .-.++..|+|++
T Consensus 83 s~e~~~~KV~II~~ae~m~~~AaNaLLK~LEE-----------Pp~~t~fiLit~~~~~lLpTI~SRCq~ 141 (261)
T PRK05818 83 SVESNGKKIYIIYGIEKLNKQSANSLLKLIEE-----------PPKNTYGIFTTRNENNILNTILSRCVQ 141 (261)
T ss_pred chhcCCCEEEEeccHhhhCHHHHHHHHHhhcC-----------CCCCeEEEEEECChHhCchHhhhheee
Confidence 3579999999999999999999999997 34688899988654 444445566543
No 193
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.44 E-value=5.8e-07 Score=94.19 Aligned_cols=79 Identities=11% Similarity=0.213 Sum_probs=58.8
Q ss_pred ceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEE
Q 003038 657 ETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVF 736 (854)
Q Consensus 657 ~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~Vi 736 (854)
..+++|+||+|||||.+|+.+++..+.....++.++++.+. ... ..+.+.+. .+.+|
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~-------~~~--------------~~~~~~~~--~~~lL 94 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA-------QAD--------------PEVLEGLE--QADLV 94 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH-------HhH--------------HHHHhhcc--cCCEE
Confidence 35899999999999999999999987666678888887664 110 11222222 24699
Q ss_pred EEecCCCCCHHH--HHHHHHhhhc
Q 003038 737 LIEDVEQADYCS--QKGFKRAIES 758 (854)
Q Consensus 737 liDEieka~~~v--~~~Ll~~le~ 758 (854)
+|||++.++... ++.|...++.
T Consensus 95 vIDdi~~l~~~~~~~~~L~~~l~~ 118 (226)
T TIGR03420 95 CLDDVEAIAGQPEWQEALFHLYNR 118 (226)
T ss_pred EEeChhhhcCChHHHHHHHHHHHH
Confidence 999999998744 8888888864
No 194
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.42 E-value=6.5e-07 Score=84.38 Aligned_cols=115 Identities=12% Similarity=0.084 Sum_probs=72.3
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCcccccccc----ccC--CCCCCchH--HHHHHHHH
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNK----RSR--DEQSCSYI--ERFAEAVS 729 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~----rl~--~~~g~g~~--e~L~eav~ 729 (854)
..++|.||+|+|||++++.||..++.....++.++++.... ..... ... .....+.. +.+.+.++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILE-------EVLDQLLLIIVGGKKASGSGELRLRLALALAR 75 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccc-------cCHHHHHhhhhhccCCCCCHHHHHHHHHHHHH
Confidence 37899999999999999999999976554688888775541 11100 000 01111222 25666667
Q ss_pred cCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeecCCeEEEEecCC
Q 003038 730 NNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDAIVILSCES 782 (854)
Q Consensus 730 ~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn~ 782 (854)
+.++.||+|||++++.............. ....-......+..+|+++|.
T Consensus 76 ~~~~~viiiDei~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 76 KLKPDVLILDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHhhhh---hHHHHHHHhcCCCEEEEEeCC
Confidence 77789999999999988776665543211 000011233456678888874
No 195
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.40 E-value=1.6e-06 Score=104.15 Aligned_cols=120 Identities=12% Similarity=0.104 Sum_probs=77.3
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHh-------CCCCceEEE
Q 003038 619 KVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVF-------GSHNNFVSI 691 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lf-------g~~~~~i~i 691 (854)
.++||+.++..+...+.. + .+ ..++|+||+|+|||++|+.+++... .....|+.+
T Consensus 155 ~iiGqs~~~~~l~~~ia~-------~----------~~-~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i 216 (615)
T TIGR02903 155 EIVGQERAIKALLAKVAS-------P----------FP-QHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV 216 (615)
T ss_pred hceeCcHHHHHHHHHHhc-------C----------CC-CeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE
Confidence 489999999877655421 1 12 3689999999999999999988763 134678999
Q ss_pred ccccccCcCCCcccccccc-ccCCC---CCC-chHHH---------HHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhh
Q 003038 692 ALSSFSSTRADSTEDSRNK-RSRDE---QSC-SYIER---------FAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIE 757 (854)
Q Consensus 692 d~s~~~~~~~~s~e~~~~~-rl~~~---~g~-g~~e~---------L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le 757 (854)
+++.+.. +...+. .+++. +.+ +.... ....+......|+||||++.+++..|+.|+++|+
T Consensus 217 ~~~~l~~------d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le 290 (615)
T TIGR02903 217 DGTTLRW------DPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLE 290 (615)
T ss_pred echhccC------CHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHh
Confidence 9876531 000000 00100 000 00000 1112223446799999999999999999999999
Q ss_pred cCeEe
Q 003038 758 SGRIV 762 (854)
Q Consensus 758 ~G~l~ 762 (854)
++++.
T Consensus 291 ~~~v~ 295 (615)
T TIGR02903 291 DKRVE 295 (615)
T ss_pred hCeEE
Confidence 98754
No 196
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=98.40 E-value=1.1e-06 Score=97.22 Aligned_cols=111 Identities=10% Similarity=0.076 Sum_probs=71.8
Q ss_pred CcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCchHH----HHHHHHH-
Q 003038 655 KEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIE----RFAEAVS- 729 (854)
Q Consensus 655 kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e----~L~eav~- 729 (854)
+++.-++|+||+|||||.+|+++|..+ .-+|+.+++++..+ ++ . |-.+ ++++..+
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el---g~~~i~vsa~eL~s-------k~-----v-----GEsEk~IR~~F~~A~~ 205 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM---GIEPIVMSAGELES-------EN-----A-----GEPGKLIRQRYREAAD 205 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc---CCCeEEEEHHHhhc-------Cc-----C-----CcHHHHHHHHHHHHHH
Confidence 445578999999999999999999998 45789998886651 11 1 3222 2232222
Q ss_pred ----cCCCEEEEEecCCCCCHH------------HHHHHHHhhhc-------CeEecCCCceeecCCeEEEEecCCCCCC
Q 003038 730 ----NNPHRVFLIEDVEQADYC------------SQKGFKRAIES-------GRIVTSSGDEVSLGDAIVILSCESFSSR 786 (854)
Q Consensus 730 ----~~p~~ViliDEieka~~~------------v~~~Ll~~le~-------G~l~d~~G~~v~~~~aIiIlTsn~f~~~ 786 (854)
+...+||||||||..-+. +...|+..+|. |..++ .-..++++||.|+|.++..
T Consensus 206 ~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~----~~~~~~V~VIaTTNrpd~L 281 (413)
T PLN00020 206 IIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWRE----KEEIPRVPIIVTGNDFSTL 281 (413)
T ss_pred HhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccc----cccCCCceEEEeCCCcccC
Confidence 334599999999965321 22456777763 21110 1134578899999987766
Q ss_pred CCC
Q 003038 787 SRA 789 (854)
Q Consensus 787 s~~ 789 (854)
..+
T Consensus 282 DpA 284 (413)
T PLN00020 282 YAP 284 (413)
T ss_pred CHh
Confidence 444
No 197
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.40 E-value=7.5e-07 Score=103.22 Aligned_cols=140 Identities=14% Similarity=0.152 Sum_probs=94.6
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccC
Q 003038 619 KVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSS 698 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~ 698 (854)
.++|+...+..+...+...- ....++++.|++|+||+.+|+.+.........+|+.+||..+.
T Consensus 140 ~lig~s~~~~~l~~~i~~~a----------------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~- 202 (445)
T TIGR02915 140 GLITSSPGMQKICRTIEKIA----------------PSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIP- 202 (445)
T ss_pred ceeecCHHHHHHHHHHHHHh----------------CCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCC-
Confidence 47888888877777666431 1234677899999999999999998876667889999999775
Q ss_pred cCCCccccccccccCCC-CC-C-chHHHHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeecCCeE
Q 003038 699 TRADSTEDSRNKRSRDE-QS-C-SYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDAI 775 (854)
Q Consensus 699 ~~~~s~e~~~~~rl~~~-~g-~-g~~e~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~~~aI 775 (854)
+..--+.+.+. .| + |......+.+......++|||||+.+++.+|..|+++|++|.+.--.|....-.++.
T Consensus 203 ------~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~r 276 (445)
T TIGR02915 203 ------ENLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVR 276 (445)
T ss_pred ------hHHHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceE
Confidence 21111111110 00 0 111111122334456899999999999999999999999998875444333234778
Q ss_pred EEEecC
Q 003038 776 VILSCE 781 (854)
Q Consensus 776 iIlTsn 781 (854)
||+||+
T Consensus 277 ii~~~~ 282 (445)
T TIGR02915 277 IVCATN 282 (445)
T ss_pred EEEecC
Confidence 888886
No 198
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.40 E-value=6.7e-07 Score=86.89 Aligned_cols=108 Identities=12% Similarity=0.181 Sum_probs=76.3
Q ss_pred cccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcC
Q 003038 621 PWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTR 700 (854)
Q Consensus 621 ~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~ 700 (854)
+|+..++..+.+.+.+... ....+++.|++|+||+.+|+.|...-......|+.+++....
T Consensus 1 vG~S~~~~~l~~~l~~~a~----------------~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----------------SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----------------SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---
T ss_pred CCCCHHHHHHHHHHHHHhC----------------CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---
Confidence 5788888888888887642 224689999999999999999998765555566665554321
Q ss_pred CCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeecCCeEEEEec
Q 003038 701 ADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDAIVILSC 780 (854)
Q Consensus 701 ~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIiIlTs 780 (854)
.+.+.+.....++|+|||.++++.|..|++.|+... -.++.+|+||
T Consensus 62 ------------------------~~~l~~a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~----------~~~~RlI~ss 107 (138)
T PF14532_consen 62 ------------------------AELLEQAKGGTLYLKNIDRLSPEAQRRLLDLLKRQE----------RSNVRLIASS 107 (138)
T ss_dssp ------------------------HHHHHHCTTSEEEEECGCCS-HHHHHHHHHHHHHCT----------TTTSEEEEEE
T ss_pred ------------------------HHHHHHcCCCEEEECChHHCCHHHHHHHHHHHHhcC----------CCCeEEEEEe
Confidence 122333466789999999999999999999998732 2345788887
Q ss_pred C
Q 003038 781 E 781 (854)
Q Consensus 781 n 781 (854)
+
T Consensus 108 ~ 108 (138)
T PF14532_consen 108 S 108 (138)
T ss_dssp C
T ss_pred C
Confidence 4
No 199
>PRK04132 replication factor C small subunit; Provisional
Probab=98.39 E-value=7.5e-07 Score=108.83 Aligned_cols=96 Identities=21% Similarity=0.301 Sum_probs=70.4
Q ss_pred eEEEec--CCCchHHHHHHHHHHHHhCC--CCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHc----
Q 003038 659 WLFFQG--VDADAKEKIAKELARLVFGS--HNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSN---- 730 (854)
Q Consensus 659 ~lLf~G--p~GvGKt~lAr~LA~~lfg~--~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~---- 730 (854)
.-++.| |.+.|||++|++||+.+||. ..+++.+|.|... ....+ .+.+.++...
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r-------gid~I-----------R~iIk~~a~~~~~~ 627 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDER-------GINVI-----------REKVKEFARTKPIG 627 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc-------cHHHH-----------HHHHHHHHhcCCcC
Confidence 456678 99999999999999999986 4578999888543 00011 0122232222
Q ss_pred -CCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeecCCeEEEEecCCC
Q 003038 731 -NPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDAIVILSCESF 783 (854)
Q Consensus 731 -~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn~f 783 (854)
.++.||+|||+|+++++.|++|++.||+ .-.+++|||+||..
T Consensus 628 ~~~~KVvIIDEaD~Lt~~AQnALLk~lEe-----------p~~~~~FILi~N~~ 670 (846)
T PRK04132 628 GASFKIIFLDEADALTQDAQQALRRTMEM-----------FSSNVRFILSCNYS 670 (846)
T ss_pred CCCCEEEEEECcccCCHHHHHHHHHHhhC-----------CCCCeEEEEEeCCh
Confidence 2468999999999999999999999996 12467799999854
No 200
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=1.6e-06 Score=94.98 Aligned_cols=124 Identities=12% Similarity=0.163 Sum_probs=83.6
Q ss_pred ccccHHHHHHHHHHHHH------hhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcc
Q 003038 620 VPWQKDTVYDIANTVLK------CRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIAL 693 (854)
Q Consensus 620 V~GQ~~av~~Ia~~v~~------~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~ 693 (854)
|.|-.+|++-|-++|.. .-.|+. +|---+|++||||+|||.|||++|-.- ..-|..+..
T Consensus 214 Iagl~~AK~lL~EAVvlPi~mPe~F~Gir------------rPWkgvLm~GPPGTGKTlLAKAvATEc---~tTFFNVSs 278 (491)
T KOG0738|consen 214 IAGLHEAKKLLKEAVVLPIWMPEFFKGIR------------RPWKGVLMVGPPGTGKTLLAKAVATEC---GTTFFNVSS 278 (491)
T ss_pred hcchHHHHHHHHHHHhhhhhhHHHHhhcc------------cccceeeeeCCCCCcHHHHHHHHHHhh---cCeEEEech
Confidence 67788899988888853 334554 345568899999999999999999864 233433333
Q ss_pred ccccCcCCCccccccccccCCCCCCchHH----HHHHHHHcCCCEEEEEecCCC------------CCHHHHHHHHHhhh
Q 003038 694 SSFSSTRADSTEDSRNKRSRDEQSCSYIE----RFAEAVSNNPHRVFLIEDVEQ------------ADYCSQKGFKRAIE 757 (854)
Q Consensus 694 s~~~~~~~~s~e~~~~~rl~~~~g~g~~e----~L~eav~~~p~~ViliDEiek------------a~~~v~~~Ll~~le 757 (854)
+... .+. + |-.| -|++..|....++|||||||- ++..|.+-||.-||
T Consensus 279 stlt-------SKw-----R-----GeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmD 341 (491)
T KOG0738|consen 279 STLT-------SKW-----R-----GESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMD 341 (491)
T ss_pred hhhh-------hhh-----c-----cchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhh
Confidence 3222 111 1 4334 478888888889999999995 45678899999887
Q ss_pred cCeEecCCCceeecCCeEEEEecC
Q 003038 758 SGRIVTSSGDEVSLGDAIVILSCE 781 (854)
Q Consensus 758 ~G~l~d~~G~~v~~~~aIiIlTsn 781 (854)
- -+....-+..+|||.+.
T Consensus 342 G------~~~t~e~~k~VmVLAAT 359 (491)
T KOG0738|consen 342 G------VQGTLENSKVVMVLAAT 359 (491)
T ss_pred c------cccccccceeEEEEecc
Confidence 2 12222235667777553
No 201
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.37 E-value=1.5e-06 Score=96.95 Aligned_cols=141 Identities=13% Similarity=0.135 Sum_probs=81.3
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCC----CceEEEcc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSH----NNFVSIAL 693 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~----~~~i~id~ 693 (854)
..|+||++++..+..++.. | ..+-+||.|++|+|||++||.+++++.... .+|.
T Consensus 17 ~~ivGq~~~k~al~~~~~~-------p-----------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~---- 74 (350)
T CHL00081 17 TAIVGQEEMKLALILNVID-------P-----------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN---- 74 (350)
T ss_pred HHHhChHHHHHHHHHhccC-------C-----------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC----
Confidence 4589999988877666543 2 245688999999999999999999885311 1221
Q ss_pred ccccCcCCCccc--c---------ccccc---cCC-CCCCchHHH------HHHH------------HHcCCCEEEEEec
Q 003038 694 SSFSSTRADSTE--D---------SRNKR---SRD-EQSCSYIER------FAEA------------VSNNPHRVFLIED 740 (854)
Q Consensus 694 s~~~~~~~~s~e--~---------~~~~r---l~~-~~g~g~~e~------L~ea------------v~~~p~~ViliDE 740 (854)
.|........+ . ....+ .+. |.+-. .++ +..+ +.+....|+++||
T Consensus 75 -~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~t-ed~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDE 152 (350)
T CHL00081 75 -SHPSDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGAT-EDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDE 152 (350)
T ss_pred -CCCCChhhhchhhhhhhcccccccceeccccceecCCCCc-hhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecC
Confidence 11100000000 0 00000 000 11100 011 1112 2233357999999
Q ss_pred CCCCCHHHHHHHHHhhhcCeEec-CCCceeecC-CeEEEEecCC
Q 003038 741 VEQADYCSQKGFKRAIESGRIVT-SSGDEVSLG-DAIVILSCES 782 (854)
Q Consensus 741 ieka~~~v~~~Ll~~le~G~l~d-~~G~~v~~~-~aIiIlTsn~ 782 (854)
|+.+++.+|..|+++|++|..+- ..|....+. +.|+|.|.|.
T Consensus 153 InrL~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np 196 (350)
T CHL00081 153 VNLLDDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNP 196 (350)
T ss_pred hHhCCHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCc
Confidence 99999999999999999986553 235544443 4555555553
No 202
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.36 E-value=8e-07 Score=98.93 Aligned_cols=145 Identities=12% Similarity=0.119 Sum_probs=81.0
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHH----------hCC---
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLV----------FGS--- 684 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~l----------fg~--- 684 (854)
..|+||++++..+..++.. | ..+++++.|++|+|||+++++|+..+ |++
T Consensus 4 ~~ivgq~~~~~al~~~~~~-------~-----------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~ 65 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVID-------P-----------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPS 65 (337)
T ss_pred cccccHHHHHHHHHHHhcC-------C-----------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCC
Confidence 4689999998887666542 1 25689999999999999999999988 221
Q ss_pred CCceEEEccccccCc-CCCcccc--ccccccCC----CCCCchHHHHHH------------HHHcCCCEEEEEecCCCCC
Q 003038 685 HNNFVSIALSSFSST-RADSTED--SRNKRSRD----EQSCSYIERFAE------------AVSNNPHRVFLIEDVEQAD 745 (854)
Q Consensus 685 ~~~~i~id~s~~~~~-~~~s~e~--~~~~rl~~----~~g~g~~e~L~e------------av~~~p~~ViliDEieka~ 745 (854)
...++..++...... ...+... ..+-++.. ..-.|.. .+.. .+.+....++|+|||+.++
T Consensus 66 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~-d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~ 144 (337)
T TIGR02030 66 DPEMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTL-DIERALTEGVKAFEPGLLARANRGILYIDEVNLLE 144 (337)
T ss_pred CccccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecch-hHhhHhhcCCEEeecCcceeccCCEEEecChHhCC
Confidence 111111111100000 0000000 00001110 0001211 1111 1222334799999999999
Q ss_pred HHHHHHHHHhhhcCeEec-CCCceeecC-CeEEEEecC
Q 003038 746 YCSQKGFKRAIESGRIVT-SSGDEVSLG-DAIVILSCE 781 (854)
Q Consensus 746 ~~v~~~Ll~~le~G~l~d-~~G~~v~~~-~aIiIlTsn 781 (854)
+.+|..|+++|++|.++- ..|....+. +.++|.|.|
T Consensus 145 ~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~n 182 (337)
T TIGR02030 145 DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGN 182 (337)
T ss_pred HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccc
Confidence 999999999999996432 235444443 445555555
No 203
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.35 E-value=2.3e-06 Score=104.06 Aligned_cols=127 Identities=13% Similarity=0.144 Sum_probs=75.1
Q ss_pred HHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhh
Q 003038 217 YVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCL 296 (854)
Q Consensus 217 ~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~ 296 (854)
.+...+...+-.+++|+||||||||++++.++..+ +.+++.++.. ..+. .++.+.+..+.......
T Consensus 42 ~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~----------~~~f~~lna~--~~~i-~dir~~i~~a~~~l~~~- 107 (725)
T PRK13341 42 LLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT----------RAHFSSLNAV--LAGV-KDLRAEVDRAKERLERH- 107 (725)
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh----------cCcceeehhh--hhhh-HHHHHHHHHHHHHhhhc-
Confidence 34444555566799999999999999999999764 2345555432 1111 12222222222222222
Q ss_pred CCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchhhhhccC
Q 003038 297 GRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLETLWSLH 375 (854)
Q Consensus 297 ~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~~ 375 (854)
+.+.||||||+|.+ .... . .|++. ..+|.+.+||+||...|.+ .+++|.+ |.+
T Consensus 108 ~~~~IL~IDEIh~Ln~~qQ-----------------d---aLL~~-lE~g~IiLI~aTTenp~~~---l~~aL~S--R~~ 161 (725)
T PRK13341 108 GKRTILFIDEVHRFNKAQQ-----------------D---ALLPW-VENGTITLIGATTENPYFE---VNKALVS--RSR 161 (725)
T ss_pred CCceEEEEeChhhCCHHHH-----------------H---HHHHH-hcCceEEEEEecCCChHhh---hhhHhhc--ccc
Confidence 45689999999999 4321 1 13322 1223699999999987764 3567765 444
Q ss_pred CCCCCCch
Q 003038 376 PLTIPAGS 383 (854)
Q Consensus 376 ~v~i~~~s 383 (854)
.+.++..+
T Consensus 162 v~~l~pLs 169 (725)
T PRK13341 162 LFRLKSLS 169 (725)
T ss_pred ceecCCCC
Confidence 55555443
No 204
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.35 E-value=2.7e-06 Score=103.71 Aligned_cols=159 Identities=13% Similarity=0.163 Sum_probs=101.3
Q ss_pred HHHHHHHHhhcCcccccHHHHHHHHHHHHHhhcCCCccc--CCCcCC----cccCcceeEEEecCCCchHHHHHHHHHHH
Q 003038 607 ENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTMRRK--GKFKDH----SEVKEETWLFFQGVDADAKEKIAKELARL 680 (854)
Q Consensus 607 e~l~~L~~~L~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~--~~~~~~----~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~ 680 (854)
.-+..|.+.+.-.|+|+++++..|+-.+.. |..+.. +....+ .+-|...++|+.|++|+||+.+|+.+++.
T Consensus 439 ~i~~~L~~SiaP~I~G~e~vK~ailL~L~g---G~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~l 515 (915)
T PTZ00111 439 MIYRILLDSFAPSIKARNNVKIGLLCQLFS---GNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLL 515 (915)
T ss_pred HHHHHHHHHhCCeEECCHHHHHHHHHHHhc---CCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHh
Confidence 446778888899999999999888655543 332100 000000 01245569999999999999999999985
Q ss_pred Hh----CCCCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhh
Q 003038 681 VF----GSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAI 756 (854)
Q Consensus 681 lf----g~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~l 756 (854)
-. -+...++.++++.+... ... ..| .+. .-.+++......+++|||++++++..|..|+++|
T Consensus 516 spR~~ytsG~~~s~vgLTa~~~~------~d~------~tG-~~~-le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaM 581 (915)
T PTZ00111 516 SPRSIYTSGKSSSSVGLTASIKF------NES------DNG-RAM-IQPGAVVLANGGVCCIDELDKCHNESRLSLYEVM 581 (915)
T ss_pred CCccccCCCCCCccccccchhhh------ccc------ccC-ccc-ccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHH
Confidence 32 22244444444432200 000 000 000 0011233444579999999999999999999999
Q ss_pred hcCeEecC-CCceeec-CCeEEEEecCC
Q 003038 757 ESGRIVTS-SGDEVSL-GDAIVILSCES 782 (854)
Q Consensus 757 e~G~l~d~-~G~~v~~-~~aIiIlTsn~ 782 (854)
+++.++-. .|-...+ .++.||.++|.
T Consensus 582 EqqtIsI~KaGi~~tL~ar~rVIAAaNP 609 (915)
T PTZ00111 582 EQQTVTIAKAGIVATLKAETAILASCNP 609 (915)
T ss_pred hCCEEEEecCCcceecCCCeEEEEEcCC
Confidence 99998744 4655555 48889999986
No 205
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.35 E-value=1.2e-06 Score=102.03 Aligned_cols=140 Identities=11% Similarity=0.186 Sum_probs=97.4
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccC
Q 003038 619 KVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSS 698 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~ 698 (854)
.++|...+...+...+.+.. +...++++.|.+|+||+.+|+++.+.......+|+.+||..+.+
T Consensus 135 ~lig~s~~~~~v~~~i~~~a----------------~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~ 198 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLS----------------RSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPK 198 (463)
T ss_pred ceeecCHHHHHHHHHHHHHh----------------CcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCH
Confidence 47888888888887776532 12246789999999999999999998877788999999987751
Q ss_pred cCCCccccccccccCC-CCC-C-chHHHHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeecCCeE
Q 003038 699 TRADSTEDSRNKRSRD-EQS-C-SYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDAI 775 (854)
Q Consensus 699 ~~~~s~e~~~~~rl~~-~~g-~-g~~e~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~~~aI 775 (854)
....+.+.+ ..+ + |....-.+.+.......+|||||+.+++.+|..|+++|++|.++..+|....-.++.
T Consensus 199 -------~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~r 271 (463)
T TIGR01818 199 -------DLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVR 271 (463)
T ss_pred -------HHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeE
Confidence 111111111 000 1 111111112234446789999999999999999999999999886555544445778
Q ss_pred EEEecC
Q 003038 776 VILSCE 781 (854)
Q Consensus 776 iIlTsn 781 (854)
||+||+
T Consensus 272 ii~~~~ 277 (463)
T TIGR01818 272 IVAATH 277 (463)
T ss_pred EEEeCC
Confidence 888886
No 206
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.34 E-value=2e-06 Score=106.69 Aligned_cols=111 Identities=14% Similarity=0.214 Sum_probs=74.2
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCC-------CCceEE
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGS-------HNNFVS 690 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~-------~~~~i~ 690 (854)
..|+||++.+..+...+.+. ...+.+|+||+|||||.+++.||+.+-.. ...++.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~------------------~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~ 248 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRR------------------RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS 248 (852)
T ss_pred CcccCCHHHHHHHHHHHhcC------------------CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence 35799998877777765432 12266899999999999999999987322 234566
Q ss_pred EccccccCcCCCccccccccccCCCCCC--chHHHH---HHHHHc-CCCEEEEEecCCCCCH--------HHHHHHHHhh
Q 003038 691 IALSSFSSTRADSTEDSRNKRSRDEQSC--SYIERF---AEAVSN-NPHRVFLIEDVEQADY--------CSQKGFKRAI 756 (854)
Q Consensus 691 id~s~~~~~~~~s~e~~~~~rl~~~~g~--g~~e~L---~eav~~-~p~~ViliDEieka~~--------~v~~~Ll~~l 756 (854)
++++.+. ++..| .+.++| .+.+++ ....|+|||||+.+.. ++-|.|+.++
T Consensus 249 l~l~~l~----------------ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l 312 (852)
T TIGR03345 249 LDLGLLQ----------------AGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL 312 (852)
T ss_pred eehhhhh----------------cccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHh
Confidence 6665432 11122 233343 333333 3467999999998742 4556899999
Q ss_pred hcCeEe
Q 003038 757 ESGRIV 762 (854)
Q Consensus 757 e~G~l~ 762 (854)
+.|.++
T Consensus 313 ~~G~l~ 318 (852)
T TIGR03345 313 ARGELR 318 (852)
T ss_pred hCCCeE
Confidence 998887
No 207
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.33 E-value=1.1e-06 Score=100.19 Aligned_cols=95 Identities=13% Similarity=0.150 Sum_probs=61.3
Q ss_pred cHHHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcc----cccccccchHH---HH-
Q 003038 211 RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLS----ISSFRHMNRVE---VE- 282 (854)
Q Consensus 211 r~~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~----~~~l~~~~rge---~E- 282 (854)
.++++..++..|. .+.|++|+|+||+|||.+|+.||..+.....+. .+..+.++ ...++.|++-. ++
T Consensus 180 ~e~~le~l~~~L~--~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~---~v~~VtFHpsySYeDFI~G~rP~~vgy~~ 254 (459)
T PRK11331 180 PETTIETILKRLT--IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQ---RVNMVQFHQSYSYEDFIQGYRPNGVGFRR 254 (459)
T ss_pred CHHHHHHHHHHHh--cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccc---eeeEEeecccccHHHHhcccCCCCCCeEe
Confidence 7888999998887 478999999999999999999998875332222 23333333 22344332100 10
Q ss_pred --HHHHHHHHHHHhhhCCCeEEEeCccccc
Q 003038 283 --QRVEEIKNLVRSCLGRGIVLNLGDLEWA 310 (854)
Q Consensus 283 --~rl~~l~~~~~~~~~~~~ILfidel~~l 310 (854)
--+.++...++.....+.|||||||...
T Consensus 255 ~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 255 KDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred cCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 1234444555543135899999999776
No 208
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.31 E-value=1.6e-06 Score=107.83 Aligned_cols=110 Identities=11% Similarity=0.199 Sum_probs=75.0
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCC-------CCceEEE
Q 003038 619 KVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGS-------HNNFVSI 691 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~-------~~~~i~i 691 (854)
.|+||++-+..+...+.+. ....++|+||+|||||.+|+.||..+... ...++.+
T Consensus 179 ~vigr~~ei~~~i~iL~r~------------------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 179 PVIGRDEEIRRTIQVLQRR------------------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred cCCCCHHHHHHHHHHHhcC------------------CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 4799998777776665442 12367899999999999999999987532 2456666
Q ss_pred ccccccCcCCCccccccccccCCCCCC--chHHHHHHH---H-HcCCCEEEEEecCCCCC--------HHHHHHHHHhhh
Q 003038 692 ALSSFSSTRADSTEDSRNKRSRDEQSC--SYIERFAEA---V-SNNPHRVFLIEDVEQAD--------YCSQKGFKRAIE 757 (854)
Q Consensus 692 d~s~~~~~~~~s~e~~~~~rl~~~~g~--g~~e~L~ea---v-~~~p~~ViliDEieka~--------~~v~~~Ll~~le 757 (854)
+++... .+..| .+.++|... + +.....|+||||||.+. -+.++.|+.+++
T Consensus 241 ~l~~l~----------------ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~ 304 (857)
T PRK10865 241 DMGALV----------------AGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA 304 (857)
T ss_pred ehhhhh----------------hccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhh
Confidence 665332 11122 233333333 3 23456899999999874 247999999999
Q ss_pred cCeEe
Q 003038 758 SGRIV 762 (854)
Q Consensus 758 ~G~l~ 762 (854)
.|.++
T Consensus 305 ~g~l~ 309 (857)
T PRK10865 305 RGELH 309 (857)
T ss_pred cCCCe
Confidence 98777
No 209
>PRK15115 response regulator GlrR; Provisional
Probab=98.29 E-value=2e-06 Score=99.68 Aligned_cols=117 Identities=9% Similarity=0.106 Sum_probs=79.2
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCC-CCC-C-chHHHHHHHHHcCCCE
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRD-EQS-C-SYIERFAEAVSNNPHR 734 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~-~~g-~-g~~e~L~eav~~~p~~ 734 (854)
.++++.|++|+||+.+|+.+.+.......+|+.+||..+.. ....+.+.+ ..| + |....-...+......
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~-------~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 230 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPE-------QLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCH-------HHHHHHhcCCCcCCCCCCccCCCCcEEECCCC
Confidence 47899999999999999999998766678999999997752 111011110 000 0 1100001112334457
Q ss_pred EEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeecCCeEEEEecC
Q 003038 735 VFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDAIVILSCE 781 (854)
Q Consensus 735 ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn 781 (854)
.+|||||+.+++..|..|+++|++|.++--.+....-.++.||+||+
T Consensus 231 tl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~ 277 (444)
T PRK15115 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATH 277 (444)
T ss_pred EEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCC
Confidence 99999999999999999999999998864333332334788999886
No 210
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.28 E-value=2.9e-06 Score=91.59 Aligned_cols=136 Identities=11% Similarity=0.017 Sum_probs=78.0
Q ss_pred HHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccc------ccccccchHHH-----
Q 003038 213 EDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSI------SSFRHMNRVEV----- 281 (854)
Q Consensus 213 ~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~------~~l~~~~rge~----- 281 (854)
+-+++++..+. ..++++|.||||||||++|+.+|..+ |..++.++. +.++..+.|.-
T Consensus 9 ~l~~~~l~~l~--~g~~vLL~G~~GtGKT~lA~~la~~l----------g~~~~~i~~~~~~~~~dllg~~~~~~~~~~~ 76 (262)
T TIGR02640 9 RVTSRALRYLK--SGYPVHLRGPAGTGKTTLAMHVARKR----------DRPVMLINGDAELTTSDLVGSYAGYTRKKVH 76 (262)
T ss_pred HHHHHHHHHHh--cCCeEEEEcCCCCCHHHHHHHHHHHh----------CCCEEEEeCCccCCHHHHhhhhcccchhhHH
Confidence 33455666555 46799999999999999999999753 345555533 23333222111
Q ss_pred HHHHH----------------HHHHHHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcc-----
Q 003038 282 EQRVE----------------EIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVC----- 339 (854)
Q Consensus 282 E~rl~----------------~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~----- 339 (854)
.+-+. -+...++ .|-+|+||||+.+ ..- ...+..+|.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~g~l~~A~~----~g~~lllDEi~r~~~~~-----------------q~~Ll~~Le~~~~~ 135 (262)
T TIGR02640 77 DQFIHNVVKLEDIVRQNWVDNRLTLAVR----EGFTLVYDEFTRSKPET-----------------NNVLLSVFEEGVLE 135 (262)
T ss_pred HHHHHHhhhhhcccceeecCchHHHHHH----cCCEEEEcchhhCCHHH-----------------HHHHHHHhcCCeEE
Confidence 11000 1112222 3458999999988 321 112333331
Q ss_pred -cCCC--------CceEEEEEecCHHHHHHhhccCCchhhhhccCCCCCCCch
Q 003038 340 -GIGE--------NARFWLMGIATFQSYMRCKSGHPSLETLWSLHPLTIPAGS 383 (854)
Q Consensus 340 -~~~g--------~g~l~lIgatT~~ey~k~~~~~pale~~~~~~~v~i~~~s 383 (854)
+..+ ...+++|+++++..|.-..+..++|.+ ||-.+.|+-|+
T Consensus 136 i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~--R~~~i~i~~P~ 186 (262)
T TIGR02640 136 LPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLD--RLITIFMDYPD 186 (262)
T ss_pred ccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHh--hcEEEECCCCC
Confidence 1111 025899999998887655566788888 55444444443
No 211
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.28 E-value=4.7e-06 Score=97.47 Aligned_cols=140 Identities=12% Similarity=0.129 Sum_probs=85.5
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..|+||..++..+.-++. ....++|.||+|+|||++|+.|+..+...... +.++.+...
T Consensus 192 ~dv~Gq~~~~~al~~aa~--------------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~-~~le~~~i~ 250 (499)
T TIGR00368 192 KDIKGQQHAKRALEIAAA--------------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNE-EAIETARIW 250 (499)
T ss_pred HHhcCcHHHHhhhhhhcc--------------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCc-EEEeccccc
Confidence 457999988766554432 12478999999999999999999987543211 222222211
Q ss_pred CcCC-C------cc----c-ccccc--ccCCCCCCchHHHHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEec
Q 003038 698 STRA-D------ST----E-DSRNK--RSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVT 763 (854)
Q Consensus 698 ~~~~-~------s~----e-~~~~~--rl~~~~g~g~~e~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d 763 (854)
+... . .. . .|+.+ .++++ |.. .-.+.+......|+|||||+++++.+|+.|++.||+|.++-
T Consensus 251 s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~gg---g~~-~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i 326 (499)
T TIGR00368 251 SLVGKLIDRKQIKQRPFRSPHHSASKPALVGG---GPI-PLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISI 326 (499)
T ss_pred cchhhhccccccccCCccccccccchhhhhCC---ccc-cchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEE
Confidence 1000 0 00 0 00000 01110 100 01223455567899999999999999999999999999763
Q ss_pred -CCCceeec-CCeEEEEecCC
Q 003038 764 -SSGDEVSL-GDAIVILSCES 782 (854)
Q Consensus 764 -~~G~~v~~-~~aIiIlTsn~ 782 (854)
..|..+.+ .+..+|.++|.
T Consensus 327 ~r~g~~~~~pa~frlIaa~Np 347 (499)
T TIGR00368 327 SRASAKIFYPARFQLVAAMNP 347 (499)
T ss_pred EecCcceeccCCeEEEEecCC
Confidence 23444444 58889998884
No 212
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.28 E-value=3.8e-06 Score=99.06 Aligned_cols=157 Identities=14% Similarity=0.183 Sum_probs=96.9
Q ss_pred HHHHHHHHhhcCcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCC
Q 003038 607 ENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHN 686 (854)
Q Consensus 607 e~l~~L~~~L~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~ 686 (854)
..+..|.+.+...|+||+.+...|.-++... ..+... ++..-+...++|+.|++|+|||.+||.+++..-. .
T Consensus 192 ~~~~~l~~si~p~i~G~~~~k~~l~l~l~gg---~~~~~~---~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r--~ 263 (509)
T smart00350 192 DIYERLSRSLAPSIYGHEDIKKAILLLLFGG---VHKNLP---DGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPR--A 263 (509)
T ss_pred HHHHHHHHhhCccccCcHHHHHHHHHHHhCC---CccccC---CCccccccceEEEeCCCChhHHHHHHHHHHHcCc--c
Confidence 3456788899999999998877766555432 111000 0001133458999999999999999999997632 2
Q ss_pred ceEEEccc---cccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEec
Q 003038 687 NFVSIALS---SFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVT 763 (854)
Q Consensus 687 ~~i~id~s---~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d 763 (854)
.|+....+ .+.. ... ..+.+.++. .-.+++......+++|||++++++..|..|+++|+++.++-
T Consensus 264 ~~~~~~~~~~~~l~~--------~~~---~~~~~g~~~-~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i 331 (509)
T smart00350 264 VYTTGKGSSAVGLTA--------AVT---RDPETREFT-LEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISI 331 (509)
T ss_pred eEcCCCCCCcCCccc--------cce---EccCcceEE-ecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEE
Confidence 23321111 1110 000 000000000 00112233446799999999999999999999999999875
Q ss_pred C-CCceeec-CCeEEEEecCCC
Q 003038 764 S-SGDEVSL-GDAIVILSCESF 783 (854)
Q Consensus 764 ~-~G~~v~~-~~aIiIlTsn~f 783 (854)
. .|....+ .++.||.|+|..
T Consensus 332 ~k~G~~~~l~~~~~viAa~NP~ 353 (509)
T smart00350 332 AKAGITTTLNARCSVLAAANPI 353 (509)
T ss_pred EeCCEEEEecCCcEEEEEeCCC
Confidence 4 4655555 478889999853
No 213
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=2.2e-06 Score=102.33 Aligned_cols=142 Identities=16% Similarity=0.132 Sum_probs=93.5
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
+.|-|.++|..+|-+.|.-.+....+.+ .. .|.+.=.|++||||||||.|||++|-.- .-+|+.+..|+|.
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~-lG-----AKiPkGvLL~GPPGTGKTLLAKAiAGEA---gVPF~svSGSEFv 381 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQE-LG-----AKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSVSGSEFV 381 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHH-cC-----CcCcCceEEECCCCCcHHHHHHHHhccc---CCceeeechHHHH
Confidence 6789999999999999865433222111 00 1233345788999999999999999754 5799999999998
Q ss_pred CcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEecCCCCCH---------------HHHHHHHHhhhcCeEe
Q 003038 698 STRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQADY---------------CSQKGFKRAIESGRIV 762 (854)
Q Consensus 698 ~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliDEieka~~---------------~v~~~Ll~~le~G~l~ 762 (854)
|-+- +.|..-...|+...|.+-.+|||+||||-... ..+|.|+--|| |
T Consensus 382 -------E~~~------g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emD-g--- 444 (774)
T KOG0731|consen 382 -------EMFV------GVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMD-G--- 444 (774)
T ss_pred -------HHhc------ccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhc-C---
Confidence 3221 11111223677778888889999999995422 23344444443 2
Q ss_pred cCCCceeecCCeEEEEecCCCCCCCCCC
Q 003038 763 TSSGDEVSLGDAIVILSCESFSSRSRAC 790 (854)
Q Consensus 763 d~~G~~v~~~~aIiIlTsn~f~~~s~~~ 790 (854)
-..+ .++||+.+||-.|..-.+.
T Consensus 445 ----f~~~-~~vi~~a~tnr~d~ld~al 467 (774)
T KOG0731|consen 445 ----FETS-KGVIVLAATNRPDILDPAL 467 (774)
T ss_pred ----CcCC-CcEEEEeccCCccccCHHh
Confidence 2223 6788899999766655553
No 214
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.26 E-value=2e-06 Score=106.36 Aligned_cols=126 Identities=7% Similarity=0.039 Sum_probs=80.1
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccccccc---------ccchHHHHHHHHHHHHHHHhhhC
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFR---------HMNRVEVEQRVEEIKNLVRSCLG 297 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~---------~~~rge~E~rl~~l~~~~~~~~~ 297 (854)
..+++|+||||||||++++.+|..+ +..++.++++.+. ..|.|....++.+.+..+...
T Consensus 347 ~~~lll~GppG~GKT~lAk~iA~~l----------~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~-- 414 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSIAKAL----------NRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTK-- 414 (775)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh----------cCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcC--
Confidence 3468999999999999999999875 3456666544321 236677777777776665543
Q ss_pred CCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhccc---------CCC----CceEEEEEecCHHHHHHhhc
Q 003038 298 RGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG---------IGE----NARFWLMGIATFQSYMRCKS 363 (854)
Q Consensus 298 ~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~---------~~g----~g~l~lIgatT~~ey~k~~~ 363 (854)
.+ |+|||||+.+ ....+. + ..-+-.+|.+ ..+ -+.+.+|+||+.-. .
T Consensus 415 ~~-villDEidk~~~~~~~~---------~----~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~-----~ 475 (775)
T TIGR00763 415 NP-LFLLDEIDKIGSSFRGD---------P----ASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSID-----T 475 (775)
T ss_pred CC-EEEEechhhcCCccCCC---------H----HHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCch-----h
Confidence 34 7899999999 422111 1 1112222221 000 02588888887632 4
Q ss_pred cCCchhhhhccCCCCCCCchHH
Q 003038 364 GHPSLETLWSLHPLTIPAGSLS 385 (854)
Q Consensus 364 ~~pale~~~~~~~v~i~~~sl~ 385 (854)
-+|+|-+ ||+.|.++..+..
T Consensus 476 i~~~L~~--R~~vi~~~~~~~~ 495 (775)
T TIGR00763 476 IPRPLLD--RMEVIELSGYTEE 495 (775)
T ss_pred CCHHHhC--CeeEEecCCCCHH
Confidence 5899998 8888888876643
No 215
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.26 E-value=3.5e-06 Score=88.69 Aligned_cols=74 Identities=12% Similarity=0.145 Sum_probs=58.5
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEE
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFL 737 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~Vil 737 (854)
.+++|+||+|+|||.+|+++++.++.....++.+++.... +.. . ......+|+
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~-------~~~------------------~--~~~~~~~li 95 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL-------LAF------------------D--FDPEAELYA 95 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH-------HHH------------------h--hcccCCEEE
Confidence 4789999999999999999999988777788888776443 110 0 011256999
Q ss_pred EecCCCCCHHHHHHHHHhhhc
Q 003038 738 IEDVEQADYCSQKGFKRAIES 758 (854)
Q Consensus 738 iDEieka~~~v~~~Ll~~le~ 758 (854)
|||||.+++..+..|+.+++.
T Consensus 96 iDdi~~l~~~~~~~L~~~~~~ 116 (227)
T PRK08903 96 VDDVERLDDAQQIALFNLFNR 116 (227)
T ss_pred EeChhhcCchHHHHHHHHHHH
Confidence 999999999999999999974
No 216
>PRK06893 DNA replication initiation factor; Validated
Probab=98.25 E-value=3.5e-06 Score=89.18 Aligned_cols=93 Identities=11% Similarity=0.204 Sum_probs=59.2
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEE
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFL 737 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~Vil 737 (854)
.+++|+||+|+|||.|++++|..+.......+.+.+.... .+...+.+.+ ....+++
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~---------------------~~~~~~~~~~--~~~dlLi 96 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ---------------------YFSPAVLENL--EQQDLVC 96 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh---------------------hhhHHHHhhc--ccCCEEE
Confidence 4799999999999999999999886554455555543221 0001122222 2357999
Q ss_pred EecCCCCC--HHHHHHHHHhhhcCeEecCCCceeecCCeEEEEecCC
Q 003038 738 IEDVEQAD--YCSQKGFKRAIESGRIVTSSGDEVSLGDAIVILSCES 782 (854)
Q Consensus 738 iDEieka~--~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn~ 782 (854)
||||+... +..+..|+..|+.-+ + -+..++|+|+|.
T Consensus 97 lDDi~~~~~~~~~~~~l~~l~n~~~--~-------~~~~illits~~ 134 (229)
T PRK06893 97 LDDLQAVIGNEEWELAIFDLFNRIK--E-------QGKTLLLISADC 134 (229)
T ss_pred EeChhhhcCChHHHHHHHHHHHHHH--H-------cCCcEEEEeCCC
Confidence 99999864 555667777776421 1 123457787763
No 217
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.23 E-value=3.6e-06 Score=104.67 Aligned_cols=111 Identities=14% Similarity=0.203 Sum_probs=77.8
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCC-------CCceEE
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGS-------HNNFVS 690 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~-------~~~~i~ 690 (854)
..|+|.+..+..+...+.+. ....++|+||+|||||.+|+.||..+-.. ...++.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~------------------~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~ 240 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRR------------------TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT 240 (821)
T ss_pred CCCCCcHHHHHHHHHHHccc------------------ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence 45899998888888876542 11256899999999999999999987421 246677
Q ss_pred EccccccCcCCCccccccccccCCCCCC-c-hHHH---HHHHHHcCCCEEEEEecCCCCC--------HHHHHHHHHhhh
Q 003038 691 IALSSFSSTRADSTEDSRNKRSRDEQSC-S-YIER---FAEAVSNNPHRVFLIEDVEQAD--------YCSQKGFKRAIE 757 (854)
Q Consensus 691 id~s~~~~~~~~s~e~~~~~rl~~~~g~-g-~~e~---L~eav~~~p~~ViliDEieka~--------~~v~~~Ll~~le 757 (854)
+|++... ++..| | +.++ +.+.+...+..|+||||||... .++.+.|+.++.
T Consensus 241 l~~~~l~----------------ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~ 304 (821)
T CHL00095 241 LDIGLLL----------------AGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA 304 (821)
T ss_pred eeHHHHh----------------ccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh
Confidence 7765332 12222 3 4343 3444455667899999998442 257899999999
Q ss_pred cCeEe
Q 003038 758 SGRIV 762 (854)
Q Consensus 758 ~G~l~ 762 (854)
.|.++
T Consensus 305 rg~l~ 309 (821)
T CHL00095 305 RGELQ 309 (821)
T ss_pred CCCcE
Confidence 98877
No 218
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.19 E-value=6.8e-06 Score=87.28 Aligned_cols=80 Identities=11% Similarity=0.199 Sum_probs=49.8
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEE
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFL 737 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~Vil 737 (854)
.+++|+||+|+|||.++++++..+.........+.+..+. .+...+.+.+.+ +.+++
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~---------------------~~~~~~~~~~~~--~dlli 102 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRA---------------------WFVPEVLEGMEQ--LSLVC 102 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHh---------------------hhhHHHHHHhhh--CCEEE
Confidence 3799999999999999999999876444444444443221 011112222322 46999
Q ss_pred EecCCCCC--HHH----HHHHHHhhhcCe
Q 003038 738 IEDVEQAD--YCS----QKGFKRAIESGR 760 (854)
Q Consensus 738 iDEieka~--~~v----~~~Ll~~le~G~ 760 (854)
||||+... +.. ++.|...++.|+
T Consensus 103 iDdi~~~~~~~~~~~~lf~l~n~~~e~g~ 131 (235)
T PRK08084 103 IDNIECIAGDELWEMAIFDLYNRILESGR 131 (235)
T ss_pred EeChhhhcCCHHHHHHHHHHHHHHHHcCC
Confidence 99999874 333 444455555443
No 219
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=2.5e-06 Score=92.09 Aligned_cols=80 Identities=16% Similarity=0.231 Sum_probs=61.9
Q ss_pred HHHHHhhcCcccccHHHHHHHHHHHHHh--hcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCc
Q 003038 610 TSLCNALEKKVPWQKDTVYDIANTVLKC--RSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNN 687 (854)
Q Consensus 610 ~~L~~~L~~~V~GQ~~av~~Ia~~v~~~--rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~ 687 (854)
+.+...|.+.|+||++|.+.|+-+++.. |..+...-+. .=-+-.+|+.||||||||++||.||++. ..+
T Consensus 7 reIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~------EV~PKNILMIGpTGVGKTEIARRLAkl~---~aP 77 (444)
T COG1220 7 REIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEEELRD------EVTPKNILMIGPTGVGKTEIARRLAKLA---GAP 77 (444)
T ss_pred HHHHHHHHhHhcCcHHHHHHHHHHHHHHHHHHhcCHHHhh------ccCccceEEECCCCCcHHHHHHHHHHHh---CCC
Confidence 4667788899999999999999999753 3333221110 0112378999999999999999999998 579
Q ss_pred eEEEccccccC
Q 003038 688 FVSIALSSFSS 698 (854)
Q Consensus 688 ~i~id~s~~~~ 698 (854)
|+.+..+.|++
T Consensus 78 FiKVEATKfTE 88 (444)
T COG1220 78 FIKVEATKFTE 88 (444)
T ss_pred eEEEEeeeeee
Confidence 99999998886
No 220
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.19 E-value=9.9e-06 Score=87.77 Aligned_cols=146 Identities=14% Similarity=0.182 Sum_probs=90.1
Q ss_pred HHHHHHHhhcc---CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccc--------------ccccc-
Q 003038 215 VMYVIENLMSK---RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSIS--------------SFRHM- 276 (854)
Q Consensus 215 i~~v~~~L~r~---~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~--------------~l~~~- 276 (854)
+.++-++|... +-.|.+|||+++.|||++++.+++.--...-++. ....|+.+.+. .|.+.
T Consensus 46 L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~-~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~ 124 (302)
T PF05621_consen 46 LDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDA-ERIPVVYVQMPPEPDERRFYSAILEALGAPY 124 (302)
T ss_pred HHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCC-ccccEEEEecCCCCChHHHHHHHHHHhCccc
Confidence 44444444433 3468999999999999999988875433222221 23467776652 11111
Q ss_pred -chHHHHHHHHHHHHHHHhhhCCCeEEEeCccccc--cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEec
Q 003038 277 -NRVEVEQRVEEIKNLVRSCLGRGIVLNLGDLEWA--EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIA 353 (854)
Q Consensus 277 -~rge~E~rl~~l~~~~~~~~~~~~ILfidel~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgat 353 (854)
.+.-..++-..++..++.. +.=+|.|||+|.+ |.... .-++-|+||.-+..-++-+||++
T Consensus 125 ~~~~~~~~~~~~~~~llr~~--~vrmLIIDE~H~lLaGs~~~---------------qr~~Ln~LK~L~NeL~ipiV~vG 187 (302)
T PF05621_consen 125 RPRDRVAKLEQQVLRLLRRL--GVRMLIIDEFHNLLAGSYRK---------------QREFLNALKFLGNELQIPIVGVG 187 (302)
T ss_pred CCCCCHHHHHHHHHHHHHHc--CCcEEEeechHHHhcccHHH---------------HHHHHHHHHHHhhccCCCeEEec
Confidence 1222222222333444443 3458999999998 54321 22444555430111258999999
Q ss_pred CHHHHHHhhccCCchhhhhccCCCCCCC
Q 003038 354 TFQSYMRCKSGHPSLETLWSLHPLTIPA 381 (854)
Q Consensus 354 T~~ey~k~~~~~pale~~~~~~~v~i~~ 381 (854)
|.+.|. .+..||-|++ ||+++.+|.
T Consensus 188 t~~A~~-al~~D~QLa~--RF~~~~Lp~ 212 (302)
T PF05621_consen 188 TREAYR-ALRTDPQLAS--RFEPFELPR 212 (302)
T ss_pred cHHHHH-HhccCHHHHh--ccCCccCCC
Confidence 999998 5799999999 999999984
No 221
>PRK12377 putative replication protein; Provisional
Probab=98.19 E-value=7.4e-06 Score=87.54 Aligned_cols=88 Identities=13% Similarity=0.272 Sum_probs=60.1
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEE
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFL 737 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~Vil 737 (854)
.+|+|+||+|+|||.||.+||..+......++.+.+.++. ... +.... .+ ...+.+.+.+. ...|++
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~-------~~l--~~~~~-~~-~~~~~~l~~l~--~~dLLi 168 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVM-------SRL--HESYD-NG-QSGEKFLQELC--KVDLLV 168 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHH-------HHH--HHHHh-cc-chHHHHHHHhc--CCCEEE
Confidence 4899999999999999999999987655666666665444 111 00000 00 01123334333 356999
Q ss_pred EecC--CCCCHHHHHHHHHhhhc
Q 003038 738 IEDV--EQADYCSQKGFKRAIES 758 (854)
Q Consensus 738 iDEi--eka~~~v~~~Ll~~le~ 758 (854)
|||+ ++.++..+..|.++|+.
T Consensus 169 IDDlg~~~~s~~~~~~l~~ii~~ 191 (248)
T PRK12377 169 LDEIGIQRETKNEQVVLNQIIDR 191 (248)
T ss_pred EcCCCCCCCCHHHHHHHHHHHHH
Confidence 9999 77788899999999986
No 222
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.19 E-value=9.7e-06 Score=91.41 Aligned_cols=145 Identities=8% Similarity=0.063 Sum_probs=83.8
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCC------CceEEE
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSH------NNFVSI 691 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~------~~~i~i 691 (854)
+.++|.++-++.|...+..+-.| ...+.++++||+|+|||.+++.+++.+-... -.++.+
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~--------------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~i 80 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRG--------------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYV 80 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcC--------------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEE
Confidence 57899999999999998875432 1124789999999999999999998774221 357888
Q ss_pred ccccccCcCCCcccccccccc------CCCCCCchHH---HHHHHHH-cCCCEEEEEecCCCCCHHHHHHHHHhhhcCeE
Q 003038 692 ALSSFSSTRADSTEDSRNKRS------RDEQSCSYIE---RFAEAVS-NNPHRVFLIEDVEQADYCSQKGFKRAIESGRI 761 (854)
Q Consensus 692 d~s~~~~~~~~s~e~~~~~rl------~~~~g~g~~e---~L~eav~-~~p~~ViliDEieka~~~v~~~Ll~~le~G~l 761 (854)
++..+.+.... -..-...+ .+..+....+ .+.+.+. .++..||+|||+|.+....+..|...+.-...
T Consensus 81 n~~~~~~~~~~--~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~ 158 (365)
T TIGR02928 81 NCQILDTLYQV--LVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSN 158 (365)
T ss_pred ECCCCCCHHHH--HHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccc
Confidence 88765420000 00000001 0111222222 4555554 35567999999999953333334433321101
Q ss_pred ecCCCceeecCCeEEEEecCCC
Q 003038 762 VTSSGDEVSLGDAIVILSCESF 783 (854)
Q Consensus 762 ~d~~G~~v~~~~aIiIlTsn~f 783 (854)
. ...-.+.++|+.+|..
T Consensus 159 ~-----~~~~~~v~lI~i~n~~ 175 (365)
T TIGR02928 159 G-----DLDNAKVGVIGISNDL 175 (365)
T ss_pred c-----CCCCCeEEEEEEECCc
Confidence 1 1222456778878754
No 223
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=1e-05 Score=91.75 Aligned_cols=101 Identities=15% Similarity=0.146 Sum_probs=70.8
Q ss_pred CcccccHHHHHHHHHHHHHhhcC--CCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSG--TMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSS 695 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsg--l~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~ 695 (854)
+.|.|-++|..++-+.|.-.|.- ..+-.++ =|. -+|+.||||+|||.|||++|-.- .-+|.....|+
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGK-------LPK-GVLLvGPPGTGKTlLARAvAGEA---~VPFF~~sGSE 372 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGK-------LPK-GVLLVGPPGTGKTLLARAVAGEA---GVPFFYASGSE 372 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCc-------CCC-ceEEeCCCCCchhHHHHHhhccc---CCCeEeccccc
Confidence 67899999999888888654321 0111111 122 36888999999999999999654 46788888888
Q ss_pred ccCcCCCccccccccccCCCCCCchHH--HHHHHHHcCCCEEEEEecCCCC
Q 003038 696 FSSTRADSTEDSRNKRSRDEQSCSYIE--RFAEAVSNNPHRVFLIEDVEQA 744 (854)
Q Consensus 696 ~~~~~~~s~e~~~~~rl~~~~g~g~~e--~L~eav~~~p~~ViliDEieka 744 (854)
|. |-+- |-|... .|+.+.+.+..|||||||||-.
T Consensus 373 Fd-------Em~V--------GvGArRVRdLF~aAk~~APcIIFIDEiDav 408 (752)
T KOG0734|consen 373 FD-------EMFV--------GVGARRVRDLFAAAKARAPCIIFIDEIDAV 408 (752)
T ss_pred hh-------hhhh--------cccHHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 86 3221 123332 6888888888899999999964
No 224
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.18 E-value=5.6e-06 Score=87.94 Aligned_cols=122 Identities=11% Similarity=0.025 Sum_probs=74.8
Q ss_pred ccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEE
Q 003038 224 SKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLN 303 (854)
Q Consensus 224 r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILf 303 (854)
-...++.+|+||||+|||.++.+++..+.+. +.+++-+++..... ...++++.+++. .+|+
T Consensus 42 ~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~-------~~~v~y~~~~~~~~--------~~~~~~~~~~~~----dlli 102 (235)
T PRK08084 42 QEHSGYIYLWSREGAGRSHLLHAACAELSQR-------GRAVGYVPLDKRAW--------FVPEVLEGMEQL----SLVC 102 (235)
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEEHHHHhh--------hhHHHHHHhhhC----CEEE
Confidence 3456789999999999999999999876542 34444444433221 122344444432 4799
Q ss_pred eCccccc-cccccccccccccchhhhHHHHHHHhhccc--CCCCceEEEEEecCHHHHHHhhccCCchhhhhcc---CCC
Q 003038 304 LGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG--IGENARFWLMGIATFQSYMRCKSGHPSLETLWSL---HPL 377 (854)
Q Consensus 304 idel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~--~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~---~~v 377 (854)
|||+|.+ +... ....+-.++.. ..| ..++|++++ ..+...-...|.|.+ |+ ..+
T Consensus 103 iDdi~~~~~~~~---------------~~~~lf~l~n~~~e~g--~~~li~ts~-~~p~~l~~~~~~L~S--Rl~~g~~~ 162 (235)
T PRK08084 103 IDNIECIAGDEL---------------WEMAIFDLYNRILESG--RTRLLITGD-RPPRQLNLGLPDLAS--RLDWGQIY 162 (235)
T ss_pred EeChhhhcCCHH---------------HHHHHHHHHHHHHHcC--CCeEEEeCC-CChHHcCcccHHHHH--HHhCCcee
Confidence 9999999 5422 11233334422 233 477888877 333443346799988 77 666
Q ss_pred CCCCchH
Q 003038 378 TIPAGSL 384 (854)
Q Consensus 378 ~i~~~sl 384 (854)
.|.+++.
T Consensus 163 ~l~~~~~ 169 (235)
T PRK08084 163 KLQPLSD 169 (235)
T ss_pred eecCCCH
Confidence 7766653
No 225
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.16 E-value=2.6e-06 Score=85.86 Aligned_cols=44 Identities=23% Similarity=0.419 Sum_probs=32.9
Q ss_pred cHHHHHHHHHHhh---ccCcCCceeecCCCCCHHHHHHHHHHHHHcC
Q 003038 211 RNEDVMYVIENLM---SKRKRNFVVVGECLASIEGVVRGVIDKIEKG 254 (854)
Q Consensus 211 r~~ei~~v~~~L~---r~~k~n~vLvGe~GvGKta~v~~la~~i~~~ 254 (854)
|++|++++...|. ....++++|+|++|+|||++++.++.++...
T Consensus 5 R~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 5 REEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999993 2267789999999999999999999998875
No 226
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.15 E-value=6.8e-06 Score=86.49 Aligned_cols=77 Identities=14% Similarity=0.227 Sum_probs=62.4
Q ss_pred HHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHh
Q 003038 215 VMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRS 294 (854)
Q Consensus 215 i~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~ 294 (854)
++-....+.-...||++|.|+.|+|||++|+++..+... +|.++|.++-..|.. |.+|++.++.
T Consensus 40 ~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~-------~GLRlIev~k~~L~~---------l~~l~~~l~~ 103 (249)
T PF05673_consen 40 IENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYAD-------QGLRLIEVSKEDLGD---------LPELLDLLRD 103 (249)
T ss_pred HHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhh-------cCceEEEECHHHhcc---------HHHHHHHHhc
Confidence 444444566668899999999999999999999988765 468999998777764 7778888886
Q ss_pred hhCCCeEEEeCccc
Q 003038 295 CLGRGIVLNLGDLE 308 (854)
Q Consensus 295 ~~~~~~ILfidel~ 308 (854)
. +...|||+||+-
T Consensus 104 ~-~~kFIlf~DDLs 116 (249)
T PF05673_consen 104 R-PYKFILFCDDLS 116 (249)
T ss_pred C-CCCEEEEecCCC
Confidence 5 678999999973
No 227
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=3.5e-06 Score=89.41 Aligned_cols=93 Identities=17% Similarity=0.215 Sum_probs=64.7
Q ss_pred ccccHHHHHHHHHHHHHh------hcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcc
Q 003038 620 VPWQKDTVYDIANTVLKC------RSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIAL 693 (854)
Q Consensus 620 V~GQ~~av~~Ia~~v~~~------rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~ 693 (854)
|-|-+.|.+++-++|..- -.|- .+|..-+|++||+|+||++||+++|-.- ..-|.++.-
T Consensus 135 VAGLE~AKeALKEAVILPIKFPqlFtGk------------R~PwrgiLLyGPPGTGKSYLAKAVATEA---nSTFFSvSS 199 (439)
T KOG0739|consen 135 VAGLEGAKEALKEAVILPIKFPQLFTGK------------RKPWRGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSS 199 (439)
T ss_pred hccchhHHHHHHhheeecccchhhhcCC------------CCcceeEEEeCCCCCcHHHHHHHHHhhc---CCceEEeeh
Confidence 556667777777777532 2221 1566678999999999999999999865 245555544
Q ss_pred ccccCcCCCccccccccccCCCCCCchHH----HHHHHHHcCCCEEEEEecCCCC
Q 003038 694 SSFSSTRADSTEDSRNKRSRDEQSCSYIE----RFAEAVSNNPHRVFLIEDVEQA 744 (854)
Q Consensus 694 s~~~~~~~~s~e~~~~~rl~~~~g~g~~e----~L~eav~~~p~~ViliDEieka 744 (854)
|... ++.. |-.| .|++..|++..+||||||||-+
T Consensus 200 SDLv------------SKWm-----GESEkLVknLFemARe~kPSIIFiDEiDsl 237 (439)
T KOG0739|consen 200 SDLV------------SKWM-----GESEKLVKNLFEMARENKPSIIFIDEIDSL 237 (439)
T ss_pred HHHH------------HHHh-----ccHHHHHHHHHHHHHhcCCcEEEeehhhhh
Confidence 4332 1111 3333 7899999999999999999965
No 228
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.15 E-value=5.1e-06 Score=101.50 Aligned_cols=117 Identities=12% Similarity=0.138 Sum_probs=74.7
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccC
Q 003038 619 KVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSS 698 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~ 698 (854)
.++|.+..+..+...+.+.+ ....||+||+|||||.+|+.||..+.....++...++.-|..
T Consensus 187 ~liGR~~ei~~~i~iL~r~~------------------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l 248 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRR------------------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_pred cCcCCCHHHHHHHHHHhccC------------------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec
Confidence 57999988888887666521 124588999999999999999987644332332223322220
Q ss_pred cCCCccccccccccCCCCCC-c-hHH---HHHHHHHcCCCEEEEEecCCCC---------CHHHHHHHHHhhhcCeEe
Q 003038 699 TRADSTEDSRNKRSRDEQSC-S-YIE---RFAEAVSNNPHRVFLIEDVEQA---------DYCSQKGFKRAIESGRIV 762 (854)
Q Consensus 699 ~~~~s~e~~~~~rl~~~~g~-g-~~e---~L~eav~~~p~~ViliDEieka---------~~~v~~~Ll~~le~G~l~ 762 (854)
....++.+..| | +.+ .+.+.+++....|+||||||.+ ..++.|.|+.++..|.+.
T Consensus 249 ---------~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~ 317 (758)
T PRK11034 249 ---------DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIR 317 (758)
T ss_pred ---------cHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeE
Confidence 01122222222 2 222 3445556677789999999965 356778899999888776
No 229
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.14 E-value=7.2e-06 Score=102.37 Aligned_cols=111 Identities=12% Similarity=0.219 Sum_probs=74.1
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCC-------CCceEE
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGS-------HNNFVS 690 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~-------~~~~i~ 690 (854)
..|+||++.+..+...+.+. .....+|+||+|||||.+++.||+.+... ...++.
T Consensus 173 ~~~igr~~ei~~~~~~l~r~------------------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~ 234 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRR------------------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA 234 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcC------------------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEE
Confidence 35899998877777765431 12356899999999999999999987431 345566
Q ss_pred EccccccCcCCCccccccccccCCCCCC-c-hHHHHH---HHHHc-CCCEEEEEecCCCCC--------HHHHHHHHHhh
Q 003038 691 IALSSFSSTRADSTEDSRNKRSRDEQSC-S-YIERFA---EAVSN-NPHRVFLIEDVEQAD--------YCSQKGFKRAI 756 (854)
Q Consensus 691 id~s~~~~~~~~s~e~~~~~rl~~~~g~-g-~~e~L~---eav~~-~p~~ViliDEieka~--------~~v~~~Ll~~l 756 (854)
++++... .+..| | +.+++. ..+.+ ....|+||||||.+. .++.+.|+.++
T Consensus 235 l~~~~l~----------------a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l 298 (852)
T TIGR03346 235 LDMGALI----------------AGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL 298 (852)
T ss_pred eeHHHHh----------------hcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh
Confidence 6655332 11112 2 222333 33333 456899999999764 35889999999
Q ss_pred hcCeEe
Q 003038 757 ESGRIV 762 (854)
Q Consensus 757 e~G~l~ 762 (854)
..|.+.
T Consensus 299 ~~g~i~ 304 (852)
T TIGR03346 299 ARGELH 304 (852)
T ss_pred hcCceE
Confidence 888776
No 230
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=7.1e-06 Score=87.81 Aligned_cols=114 Identities=15% Similarity=0.172 Sum_probs=76.2
Q ss_pred CcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCE
Q 003038 655 KEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHR 734 (854)
Q Consensus 655 kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ 734 (854)
+|+--++++||+|+|||.+|+++|..+ .-+|+.+-.+++. +++ ++.++.=..+.+..| ++.-.|
T Consensus 164 k~Pkg~ll~GppGtGKTlla~~Vaa~m---g~nfl~v~ss~lv-------~ky-----iGEsaRlIRemf~yA-~~~~pc 227 (388)
T KOG0651|consen 164 KPPKGLLLYGPPGTGKTLLARAVAATM---GVNFLKVVSSALV-------DKY-----IGESARLIRDMFRYA-REVIPC 227 (388)
T ss_pred CCCceeEEeCCCCCchhHHHHHHHHhc---CCceEEeeHhhhh-------hhh-----cccHHHHHHHHHHHH-hhhCce
Confidence 444578999999999999999999998 4577777666554 111 111110111233333 334449
Q ss_pred EEEEecCCC-----------CCHHHHHHHHHhhhcCeEecCCCceeecCCeEEEEecCCCCCCCCCC
Q 003038 735 VFLIEDVEQ-----------ADYCSQKGFKRAIESGRIVTSSGDEVSLGDAIVILSCESFSSRSRAC 790 (854)
Q Consensus 735 ViliDEiek-----------a~~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn~f~~~s~~~ 790 (854)
|||+||||- ++..+|.-|+..++.-.=.| .+..+=+|||+|.||..-.+.
T Consensus 228 iifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd------~l~rVk~ImatNrpdtLdpaL 288 (388)
T KOG0651|consen 228 IIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFD------TLHRVKTIMATNRPDTLDPAL 288 (388)
T ss_pred EEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccch------hcccccEEEecCCccccchhh
Confidence 999999995 57889999999988321111 245666999999988776553
No 231
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.13 E-value=2.4e-05 Score=82.49 Aligned_cols=121 Identities=9% Similarity=0.193 Sum_probs=87.8
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccC
Q 003038 619 KVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSS 698 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~ 698 (854)
.++|-+.-...|.....++..|. |...+|++|+.|+|||.+.|+|...+....-++|.+.-...
T Consensus 28 ~L~Gie~Qk~~l~~Nt~~Fl~G~--------------pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L-- 91 (249)
T PF05673_consen 28 DLIGIERQKEALIENTEQFLQGL--------------PANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL-- 91 (249)
T ss_pred HhcCHHHHHHHHHHHHHHHHcCC--------------CCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh--
Confidence 35787777788888888887763 45578999999999999999999988776666666642211
Q ss_pred cCCCccccccccccCCCCCCchHHHHHHHHHcCCCE-EEEEecCCCCC-HHHHHHHHHhhhcCeEecCCCceeecCCeEE
Q 003038 699 TRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHR-VFLIEDVEQAD-YCSQKGFKRAIESGRIVTSSGDEVSLGDAIV 776 (854)
Q Consensus 699 ~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~-ViliDEieka~-~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIi 776 (854)
.+...|.+.++..|++ |||+|+.-=-. ..-...|+.+||-| +. .--.|++|
T Consensus 92 --------------------~~l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGg-le------~~P~Nvli 144 (249)
T PF05673_consen 92 --------------------GDLPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGG-LE------ARPDNVLI 144 (249)
T ss_pred --------------------ccHHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCc-cc------cCCCcEEE
Confidence 2344688888888865 89999976433 34456666666633 32 33579999
Q ss_pred EEecCC
Q 003038 777 ILSCES 782 (854)
Q Consensus 777 IlTsn~ 782 (854)
..|||-
T Consensus 145 yATSNR 150 (249)
T PF05673_consen 145 YATSNR 150 (249)
T ss_pred EEecch
Confidence 999984
No 232
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.12 E-value=5.4e-06 Score=94.79 Aligned_cols=73 Identities=12% Similarity=0.144 Sum_probs=56.3
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccccccc-ccchHH-HHHHHHHHHHH----HHhhhCCC
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFR-HMNRVE-VEQRVEEIKNL----VRSCLGRG 299 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~-~~~rge-~E~rl~~l~~~----~~~~~~~~ 299 (854)
.+.|++|+||||||||++|+.+|..+ +..|+.++.+.+. ++|.|+ .+..+..++.. +... .+
T Consensus 107 ~~~~iLl~Gp~GtGKT~lAr~lA~~l----------~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a--~~ 174 (412)
T PRK05342 107 QKSNILLIGPTGSGKTLLAQTLARIL----------DVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKA--QR 174 (412)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHh----------CCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHc--CC
Confidence 36789999999999999999999764 4578888888775 468886 55556665543 2222 46
Q ss_pred eEEEeCccccc
Q 003038 300 IVLNLGDLEWA 310 (854)
Q Consensus 300 ~ILfidel~~l 310 (854)
.|||||||+.+
T Consensus 175 gIi~iDEIdkl 185 (412)
T PRK05342 175 GIVYIDEIDKI 185 (412)
T ss_pred cEEEEechhhh
Confidence 79999999999
No 233
>CHL00206 ycf2 Ycf2; Provisional
Probab=98.12 E-value=6.5e-06 Score=105.22 Aligned_cols=124 Identities=15% Similarity=0.109 Sum_probs=77.4
Q ss_pred cceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcC-----------CCccccc----ccc--------cc
Q 003038 656 EETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTR-----------ADSTEDS----RNK--------RS 712 (854)
Q Consensus 656 p~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~-----------~~s~e~~----~~~--------rl 712 (854)
|..-+|++||+|||||.|||+||... +-+|+++.++++.... ..+ ++. .+. .+
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es---~VPFIsISgs~fl~~~~~~~~~d~i~iges-~~~~~~~~~~~~~~~e~~e~ 1704 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS---YVPFITVFLNKFLDNKPKGFLIDDIDIDDS-DDIDDSDDIDRDLDTELLTM 1704 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc---CCceEEEEHHHHhhcccccccccccccccc-cccccccccccccchhhhhh
Confidence 33457889999999999999999976 6799999999876310 000 000 000 00
Q ss_pred C-CCCCC---ch----HHHHHHHHHcCCCEEEEEecCCCCCHH-----HHHHHHHhhhcCeEecCCCceeecCCeEEEEe
Q 003038 713 R-DEQSC---SY----IERFAEAVSNNPHRVFLIEDVEQADYC-----SQKGFKRAIESGRIVTSSGDEVSLGDAIVILS 779 (854)
Q Consensus 713 ~-~~~g~---g~----~e~L~eav~~~p~~ViliDEieka~~~-----v~~~Ll~~le~G~l~d~~G~~v~~~~aIiIlT 779 (854)
. .-.++ +. ...+.+..+++..|||+|||||.+.+. ..+.|+..|+.. +...+-++.|||.+
T Consensus 1705 ~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~------~~~~s~~~VIVIAA 1778 (2281)
T CHL00206 1705 MNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRD------CERCSTRNILVIAS 1778 (2281)
T ss_pred cchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhccc------cccCCCCCEEEEEe
Confidence 0 00000 11 123577778888899999999998754 256666666531 11123467888999
Q ss_pred cCCCCCCCCC
Q 003038 780 CESFSSRSRA 789 (854)
Q Consensus 780 sn~f~~~s~~ 789 (854)
||--+....|
T Consensus 1779 TNRPD~LDPA 1788 (2281)
T CHL00206 1779 THIPQKVDPA 1788 (2281)
T ss_pred CCCcccCCHh
Confidence 9865555554
No 234
>PRK08116 hypothetical protein; Validated
Probab=98.10 E-value=1.1e-05 Score=87.41 Aligned_cols=103 Identities=12% Similarity=0.136 Sum_probs=67.5
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEE
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLI 738 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~Vili 738 (854)
+++|+|++|+|||.||.++|+.+.....+++.++++++. ... +......+......+.+.+... .|++|
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll-------~~i--~~~~~~~~~~~~~~~~~~l~~~--dlLvi 184 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLL-------NRI--KSTYKSSGKEDENEIIRSLVNA--DLLIL 184 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH-------HHH--HHHHhccccccHHHHHHHhcCC--CEEEE
Confidence 689999999999999999999987556677777766544 111 1001001100111344444443 59999
Q ss_pred ecC--CCCCHHHHHHHHHhhhcCeEecCCCceeecCCeEEEEecCC
Q 003038 739 EDV--EQADYCSQKGFKRAIESGRIVTSSGDEVSLGDAIVILSCES 782 (854)
Q Consensus 739 DEi--eka~~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn~ 782 (854)
||+ ++.+...+..|..+|+.. +. .+.-+|+|||.
T Consensus 185 DDlg~e~~t~~~~~~l~~iin~r-~~---------~~~~~IiTsN~ 220 (268)
T PRK08116 185 DDLGAERDTEWAREKVYNIIDSR-YR---------KGLPTIVTTNL 220 (268)
T ss_pred ecccCCCCCHHHHHHHHHHHHHH-HH---------CCCCEEEECCC
Confidence 999 778888999999999863 21 11237888873
No 235
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.08 E-value=8.1e-07 Score=86.02 Aligned_cols=68 Identities=16% Similarity=0.150 Sum_probs=41.0
Q ss_pred CceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccc------cccch---HHHHHHHHHHHHHHHhhhCCC
Q 003038 229 NFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSF------RHMNR---VEVEQRVEEIKNLVRSCLGRG 299 (854)
Q Consensus 229 n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l------~~~~r---ge~E~rl~~l~~~~~~~~~~~ 299 (854)
|++|+||||+|||++|+.+|..+ +..++.+.+... ...+. |.++-+-..+...++ .+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~----------~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~----~~ 66 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL----------GRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR----KG 66 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH----------TCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH----EE
T ss_pred CEEEECCCCCCHHHHHHHHHHHh----------hcceEEEEeccccccccceeeeeeccccccccccccccccc----ce
Confidence 58999999999999999999987 345555554432 22221 111111111111222 47
Q ss_pred eEEEeCccccc
Q 003038 300 IVLNLGDLEWA 310 (854)
Q Consensus 300 ~ILfidel~~l 310 (854)
.|+||||++.+
T Consensus 67 ~il~lDEin~a 77 (139)
T PF07728_consen 67 GILVLDEINRA 77 (139)
T ss_dssp EEEEESSCGG-
T ss_pred eEEEECCcccC
Confidence 89999999877
No 236
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.08 E-value=3.6e-06 Score=90.54 Aligned_cols=129 Identities=16% Similarity=0.166 Sum_probs=82.3
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCC---ceEEEcccc
Q 003038 619 KVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHN---NFVSIALSS 695 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~---~~i~id~s~ 695 (854)
.|++|++++..+.+- +++.. ..++||+||||+|||.+..+.|+.+++... .+..++.|
T Consensus 42 dv~~~~ei~st~~~~-----~~~~~-------------lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaS- 102 (360)
T KOG0990|consen 42 IVIKQEPIWSTENRY-----SGMPG-------------LPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNAS- 102 (360)
T ss_pred hHhcCCchhhHHHHh-----ccCCC-------------CCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhcc-
Confidence 468898777765554 33322 238999999999999999999999987311 11111211
Q ss_pred ccCcCCCccccccccccCCCCCCchHH---HHHHHHH-------cCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCC
Q 003038 696 FSSTRADSTEDSRNKRSRDEQSCSYIE---RFAEAVS-------NNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSS 765 (854)
Q Consensus 696 ~~~~~~~s~e~~~~~rl~~~~g~g~~e---~L~eav~-------~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~ 765 (854)
++.|-+... .+....+ ...+..|++||.|.+..+.||+|.++++. ++
T Consensus 103 ------------------d~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek--~t--- 159 (360)
T KOG0990|consen 103 ------------------DDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEK--YT--- 159 (360)
T ss_pred ------------------CccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHH--hc---
Confidence 011112221 2222222 23788999999999999999999998774 22
Q ss_pred CceeecCCeEEEEecCCCCCCCCC-CCCCcc
Q 003038 766 GDEVSLGDAIVILSCESFSSRSRA-CSPPTK 795 (854)
Q Consensus 766 G~~v~~~~aIiIlTsn~f~~~s~~-~sp~~~ 795 (854)
.|+.|++-||.....+++ -|.|++
T Consensus 160 ------~n~rF~ii~n~~~ki~pa~qsRctr 184 (360)
T KOG0990|consen 160 ------ANTRFATISNPPQKIHPAQQSRCTR 184 (360)
T ss_pred ------cceEEEEeccChhhcCchhhccccc
Confidence 455677778876555554 244443
No 237
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.07 E-value=3.4e-05 Score=84.64 Aligned_cols=105 Identities=9% Similarity=0.111 Sum_probs=67.9
Q ss_pred ceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCC--CCCCchHH--HHHHHHHc--
Q 003038 657 ETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRD--EQSCSYIE--RFAEAVSN-- 730 (854)
Q Consensus 657 ~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~--~~g~g~~e--~L~eav~~-- 730 (854)
.+.+||+|+.|.||+.+|+.+|+.++.....- ++-.... .... .+. +...+.++ .+.+.+..
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~--~~~~~~p-------~n~~---~~d~~g~~i~vd~Ir~l~~~~~~~~ 85 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITN--LNEQELP-------ANII---LFDIFDKDLSKSEFLSAINKLYFSS 85 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCC--CCCCCCC-------cceE---EeccCCCcCCHHHHHHHHHHhccCC
Confidence 46899999999999999999999997532110 0000000 0000 011 11113332 33333322
Q ss_pred ---CCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeecCCeEEEEecCCCC
Q 003038 731 ---NPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDAIVILSCESFS 784 (854)
Q Consensus 731 ---~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn~f~ 784 (854)
.+++||+||++|+++...+|.|++.||+ .-.+++|||+|+..+
T Consensus 86 ~~~~~~KvvII~~~e~m~~~a~NaLLK~LEE-----------Pp~~t~~il~~~~~~ 131 (299)
T PRK07132 86 FVQSQKKILIIKNIEKTSNSLLNALLKTIEE-----------PPKDTYFLLTTKNIN 131 (299)
T ss_pred cccCCceEEEEecccccCHHHHHHHHHHhhC-----------CCCCeEEEEEeCChH
Confidence 3679999999999999999999999997 236788999886443
No 238
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=2.7e-05 Score=80.99 Aligned_cols=114 Identities=11% Similarity=0.206 Sum_probs=80.1
Q ss_pred EEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEe
Q 003038 660 LFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIE 739 (854)
Q Consensus 660 lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliD 739 (854)
+|++||+|+|||.+|+++|..- +-.||++..|+.. .++ ++ .|......|+--.|+...+|||+|
T Consensus 184 vlLygppgtGktLlaraVahht---~c~firvsgselv-------qk~-----ig-egsrmvrelfvmarehapsiifmd 247 (404)
T KOG0728|consen 184 VLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELV-------QKY-----IG-EGSRMVRELFVMAREHAPSIIFMD 247 (404)
T ss_pred eEEecCCCCchhHHHHHHHhhc---ceEEEEechHHHH-------HHH-----hh-hhHHHHHHHHHHHHhcCCceEeee
Confidence 5778999999999999999864 5679999888765 333 21 111222356666688888999999
Q ss_pred cCCCC-----------CHHHHHHHHHhhhcCeEecCCCceeecCCeEEEEecCCCCCCCCCCCCCcc
Q 003038 740 DVEQA-----------DYCSQKGFKRAIESGRIVTSSGDEVSLGDAIVILSCESFSSRSRACSPPTK 795 (854)
Q Consensus 740 Eieka-----------~~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn~f~~~s~~~sp~~~ 795 (854)
|||.. |.+||...+..+..= .|- -..+|.-+||.+|..|....+.=.|-|
T Consensus 248 eidsigs~r~e~~~ggdsevqrtmlellnql-----dgf-eatknikvimatnridild~allrpgr 308 (404)
T KOG0728|consen 248 EIDSIGSSRVESGSGGDSEVQRTMLELLNQL-----DGF-EATKNIKVIMATNRIDILDPALLRPGR 308 (404)
T ss_pred cccccccccccCCCCccHHHHHHHHHHHHhc-----ccc-ccccceEEEEeccccccccHhhcCCCc
Confidence 99964 678999888887530 010 123577799999998877776444433
No 239
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.07 E-value=9.9e-06 Score=93.66 Aligned_cols=139 Identities=12% Similarity=0.134 Sum_probs=89.2
Q ss_pred ccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCc
Q 003038 620 VPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSST 699 (854)
Q Consensus 620 V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~ 699 (854)
++|....+..+...+.... .....++++|.+|+||+.+|++|.........+|+.+||+...
T Consensus 141 lig~s~~~~~~~~~i~~~~----------------~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~-- 202 (441)
T PRK10365 141 MVGKSPAMQHLLSEIALVA----------------PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALN-- 202 (441)
T ss_pred eEecCHHHHHHHHHHhhcc----------------CCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCC--
Confidence 5676666665555554321 1234678899999999999999998877777899999998765
Q ss_pred CCCccccccccccCC-CCC-C-chHHHHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeecCCeEE
Q 003038 700 RADSTEDSRNKRSRD-EQS-C-SYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDAIV 776 (854)
Q Consensus 700 ~~~s~e~~~~~rl~~-~~g-~-g~~e~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIi 776 (854)
+....+.+.+ ..| + |....-.+.+......++|||||+.+++.+|..|++++++|.++.-.+...--.++.|
T Consensus 203 -----~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~ri 277 (441)
T PRK10365 203 -----ESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRL 277 (441)
T ss_pred -----HHHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEE
Confidence 1111111111 000 0 1000001123344567999999999999999999999999988753332222335667
Q ss_pred EEecC
Q 003038 777 ILSCE 781 (854)
Q Consensus 777 IlTsn 781 (854)
|+||+
T Consensus 278 i~~t~ 282 (441)
T PRK10365 278 IAATH 282 (441)
T ss_pred EEeCC
Confidence 77764
No 240
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=2.7e-05 Score=81.51 Aligned_cols=119 Identities=13% Similarity=0.189 Sum_probs=79.7
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEE
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLI 738 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~Vili 738 (854)
-+|++||+|+|||.+||++|.-- ..-||++=.|+.. +++- +.|......|++-.|.+.-++|||
T Consensus 213 gvllygppgtgktl~aravanrt---dacfirvigselv-------qkyv------gegarmvrelf~martkkaciiff 276 (435)
T KOG0729|consen 213 GVLLYGPPGTGKTLCARAVANRT---DACFIRVIGSELV-------QKYV------GEGARMVRELFEMARTKKACIIFF 276 (435)
T ss_pred ceEEeCCCCCchhHHHHHHhccc---CceEEeehhHHHH-------HHHh------hhhHHHHHHHHHHhcccceEEEEe
Confidence 35788999999999999999843 5678888877665 2321 111112236888888899999999
Q ss_pred ecCCCC-----------CHHHHHHHHHhhhcCeEecCCCceeecCCeEEEEecCCCCCCCCCCCCCcc--CCCC
Q 003038 739 EDVEQA-----------DYCSQKGFKRAIESGRIVTSSGDEVSLGDAIVILSCESFSSRSRACSPPTK--QKSD 799 (854)
Q Consensus 739 DEieka-----------~~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn~f~~~s~~~sp~~~--~~~~ 799 (854)
||||-. +.+||...|..+-.=-=.|.. .|.-+.|.+|--+....+.=.|-| +|+.
T Consensus 277 deidaiggarfddg~ggdnevqrtmleli~qldgfdpr------gnikvlmatnrpdtldpallrpgrldrkve 344 (435)
T KOG0729|consen 277 DEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR------GNIKVLMATNRPDTLDPALLRPGRLDRKVE 344 (435)
T ss_pred eccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCC------CCeEEEeecCCCCCcCHhhcCCccccccee
Confidence 999964 568999998888631112222 255577888865555555433333 4444
No 241
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.05 E-value=1.9e-05 Score=92.20 Aligned_cols=144 Identities=15% Similarity=0.167 Sum_probs=86.4
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..++||..++..+.-++ .+...++|.||+|+|||++++.|+..+..... =+.++.+...
T Consensus 191 ~~v~Gq~~~~~al~laa--------------------~~G~~llliG~~GsGKTtLak~L~gllpp~~g-~e~le~~~i~ 249 (506)
T PRK09862 191 SDVIGQEQGKRGLEITA--------------------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSN-EEALESAAIL 249 (506)
T ss_pred EEEECcHHHHhhhheec--------------------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCC-cEEEecchhh
Confidence 35789998776643221 12347899999999999999999987743221 1223333221
Q ss_pred C-cCCCccccccccccC-CCCCC-chHH-------HHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEec-CCC
Q 003038 698 S-TRADSTEDSRNKRSR-DEQSC-SYIE-------RFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVT-SSG 766 (854)
Q Consensus 698 ~-~~~~s~e~~~~~rl~-~~~g~-g~~e-------~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d-~~G 766 (854)
+ .........-..|.. .|... +... .-...+......|+|+|||+.+++.+|..|++.||+|.++- ..|
T Consensus 250 s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g 329 (506)
T PRK09862 250 SLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTR 329 (506)
T ss_pred hhhccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCC
Confidence 1 000000000001111 11110 1000 01234566677899999999999999999999999999874 334
Q ss_pred ceee-cCCeEEEEecCC
Q 003038 767 DEVS-LGDAIVILSCES 782 (854)
Q Consensus 767 ~~v~-~~~aIiIlTsn~ 782 (854)
..+. -.+..+|.|+|.
T Consensus 330 ~~~~~pa~f~lIAa~NP 346 (506)
T PRK09862 330 AKITYPARFQLVAAMNP 346 (506)
T ss_pred cceeccCCEEEEEeecC
Confidence 4443 368889999985
No 242
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.05 E-value=3.1e-05 Score=88.30 Aligned_cols=139 Identities=14% Similarity=0.112 Sum_probs=84.2
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCC--CCceEEEcccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGS--HNNFVSIALSS 695 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~--~~~~i~id~s~ 695 (854)
.+++|.++-+..|...+.....|- ++ ..++++||+|+|||.+++.+++.+-.. .-.++.+++..
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~-------------~~-~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~ 95 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGS-------------RP-LNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQI 95 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCC-------------CC-CeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCc
Confidence 567899988888888887653321 22 368999999999999999999887433 24678888876
Q ss_pred ccCcCCCccccccccccCC----CCCCchHH---HHHHHHHc-CCCEEEEEecCCCCC----HHHHHHHHHhhhcCeEec
Q 003038 696 FSSTRADSTEDSRNKRSRD----EQSCSYIE---RFAEAVSN-NPHRVFLIEDVEQAD----YCSQKGFKRAIESGRIVT 763 (854)
Q Consensus 696 ~~~~~~~s~e~~~~~rl~~----~~g~g~~e---~L~eav~~-~p~~ViliDEieka~----~~v~~~Ll~~le~G~l~d 763 (854)
+......- ..-...+.. ..+..+.+ .+.+.+.. ..+.||+|||+|.+. .+....|++.+++-
T Consensus 96 ~~~~~~~~--~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~---- 169 (394)
T PRK00411 96 DRTRYAIF--SEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY---- 169 (394)
T ss_pred CCCHHHHH--HHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc----
Confidence 54100000 000001111 11223332 45555544 345799999999875 45555666655531
Q ss_pred CCCceeecCCeEEEEecCC
Q 003038 764 SSGDEVSLGDAIVILSCES 782 (854)
Q Consensus 764 ~~G~~v~~~~aIiIlTsn~ 782 (854)
.+ .+..||+++|.
T Consensus 170 -~~-----~~v~vI~i~~~ 182 (394)
T PRK00411 170 -PG-----ARIGVIGISSD 182 (394)
T ss_pred -CC-----CeEEEEEEECC
Confidence 11 25667787765
No 243
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.03 E-value=3.5e-05 Score=85.22 Aligned_cols=136 Identities=10% Similarity=0.038 Sum_probs=82.4
Q ss_pred cHHHHHHHHHHhhccCcCCcee-ecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHH
Q 003038 211 RNEDVMYVIENLMSKRKRNFVV-VGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIK 289 (854)
Q Consensus 211 r~~ei~~v~~~L~r~~k~n~vL-vGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~ 289 (854)
.++.+..+...+.+.+..|++| +||||+|||+++++++..+ +..++.++.+. .. ...+...+.+..
T Consensus 26 ~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~----------~~~~~~i~~~~--~~-~~~i~~~l~~~~ 92 (316)
T PHA02544 26 PAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV----------GAEVLFVNGSD--CR-IDFVRNRLTRFA 92 (316)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh----------CccceEeccCc--cc-HHHHHHHHHHHH
Confidence 5566666666666656667777 7999999999999999874 23455665554 11 222333344333
Q ss_pred HHHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCch
Q 003038 290 NLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSL 368 (854)
Q Consensus 290 ~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pal 368 (854)
...... +.+-||+|||+|.+ ... ....+.+++....+ ..++|.+|+.. . ...|++
T Consensus 93 ~~~~~~-~~~~vliiDe~d~l~~~~----------------~~~~L~~~le~~~~--~~~~Ilt~n~~--~---~l~~~l 148 (316)
T PHA02544 93 STVSLT-GGGKVIIIDEFDRLGLAD----------------AQRHLRSFMEAYSK--NCSFIITANNK--N---GIIEPL 148 (316)
T ss_pred Hhhccc-CCCeEEEEECcccccCHH----------------HHHHHHHHHHhcCC--CceEEEEcCCh--h---hchHHH
Confidence 332211 35678999999988 331 11234445532112 47788877632 2 346788
Q ss_pred hhhhccCCCCCCCchHH
Q 003038 369 ETLWSLHPLTIPAGSLS 385 (854)
Q Consensus 369 e~~~~~~~v~i~~~sl~ 385 (854)
.+ |++.+.++.|+..
T Consensus 149 ~s--R~~~i~~~~p~~~ 163 (316)
T PHA02544 149 RS--RCRVIDFGVPTKE 163 (316)
T ss_pred Hh--hceEEEeCCCCHH
Confidence 88 7777777666543
No 244
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.03 E-value=1.2e-05 Score=75.68 Aligned_cols=77 Identities=13% Similarity=0.066 Sum_probs=54.9
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccccccccc--------------chHHHHHHHHHHHHHH
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHM--------------NRVEVEQRVEEIKNLV 292 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~--------------~rge~E~rl~~l~~~~ 292 (854)
.++++|+||||+|||++++.++..+.... ..++.++.+..... ....-...+..++..+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG-------GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALA 74 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC-------CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998765432 24566655543321 1223445666777888
Q ss_pred HhhhCCCeEEEeCccccc-cc
Q 003038 293 RSCLGRGIVLNLGDLEWA-EF 312 (854)
Q Consensus 293 ~~~~~~~~ILfidel~~l-~~ 312 (854)
+.. .+.||||||++.+ ..
T Consensus 75 ~~~--~~~viiiDei~~~~~~ 93 (148)
T smart00382 75 RKL--KPDVLILDEITSLLDA 93 (148)
T ss_pred Hhc--CCCEEEEECCcccCCH
Confidence 765 4689999999999 54
No 245
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=3.6e-05 Score=88.83 Aligned_cols=130 Identities=11% Similarity=0.099 Sum_probs=72.7
Q ss_pred cHHHHHHHH-HHhhccCcCC-ceeecCCCCCHHHHHHHHHHHHHcCCCCc--------------ccCCceEEEccccccc
Q 003038 211 RNEDVMYVI-ENLMSKRKRN-FVVVGECLASIEGVVRGVIDKIEKGDVPE--------------ALRDVKCLPLSISSFR 274 (854)
Q Consensus 211 r~~ei~~v~-~~L~r~~k~n-~vLvGe~GvGKta~v~~la~~i~~~~vp~--------------~L~~~~~~~l~~~~l~ 274 (854)
..+.+.+.+ ..+..++-.+ .+|+||+|+|||++|+.+|..+....-+. ......|+.++.++
T Consensus 22 GQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas-- 99 (484)
T PRK14956 22 HQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAAS-- 99 (484)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhh--
Confidence 455554444 4444434333 69999999999999999999876532110 00111344444321
Q ss_pred ccchHHHHHHHHHHHHHHHhhh--CCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEE
Q 003038 275 HMNRVEVEQRVEEIKNLVRSCL--GRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMG 351 (854)
Q Consensus 275 ~~~rge~E~rl~~l~~~~~~~~--~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIg 351 (854)
.+| -..++++++.+.... ++.-|+||||+|.+ .. +...+-..|....+ .+.+|.
T Consensus 100 --~~g--Vd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~-----------------A~NALLKtLEEPp~--~viFIL 156 (484)
T PRK14956 100 --NRG--IENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQ-----------------SFNALLKTLEEPPA--HIVFIL 156 (484)
T ss_pred --ccc--HHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHH-----------------HHHHHHHHhhcCCC--ceEEEe
Confidence 111 123455555554321 45679999999999 43 12233333421123 599999
Q ss_pred ecCHHHHHHhhccCCchhh
Q 003038 352 IATFQSYMRCKSGHPSLET 370 (854)
Q Consensus 352 atT~~ey~k~~~~~pale~ 370 (854)
+||. +.+ .-|++.+
T Consensus 157 aTte--~~k---I~~TI~S 170 (484)
T PRK14956 157 ATTE--FHK---IPETILS 170 (484)
T ss_pred ecCC--hhh---ccHHHHh
Confidence 9986 333 3466655
No 246
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=9e-06 Score=86.12 Aligned_cols=146 Identities=14% Similarity=0.192 Sum_probs=96.1
Q ss_pred cccccHHHHHHHHHHHHH--------hhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEE
Q 003038 619 KVPWQKDTVYDIANTVLK--------CRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVS 690 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~--------~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~ 690 (854)
.|-|-+.-|.+|-++|.. --.|+. |+--++++|+||+|||.||+++|..- ..-|++
T Consensus 186 diGGle~QiQEiKEsvELPLthPE~YeemGik-------------pPKGVIlyG~PGTGKTLLAKAVANqT---SATFlR 249 (440)
T KOG0726|consen 186 DIGGLESQIQEIKESVELPLTHPEYYEEMGIK-------------PPKGVILYGEPGTGKTLLAKAVANQT---SATFLR 249 (440)
T ss_pred ccccHHHHHHHHHHhhcCCCCCHHHHHHcCCC-------------CCCeeEEeCCCCCchhHHHHHHhccc---chhhhh
Confidence 355666667777777742 223443 33346788999999999999999854 456777
Q ss_pred EccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEecCCCC-----------CHHHHHHHHHhhhcC
Q 003038 691 IALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQA-----------DYCSQKGFKRAIESG 759 (854)
Q Consensus 691 id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliDEieka-----------~~~v~~~Ll~~le~G 759 (854)
+-.|+.. .++. +.|.-...+|+....++..+|+||||||-. ..++|..+|..+..=
T Consensus 250 vvGseLi-------Qkyl------GdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQl 316 (440)
T KOG0726|consen 250 VVGSELI-------QKYL------GDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQL 316 (440)
T ss_pred hhhHHHH-------HHHh------ccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhc
Confidence 7777655 3322 112123346777777888899999999964 357888888887531
Q ss_pred eEecCCCceeecCCeEEEEecCCCCCCCCCCCCCcc--CCCC
Q 003038 760 RIVTSSGDEVSLGDAIVILSCESFSSRSRACSPPTK--QKSD 799 (854)
Q Consensus 760 ~l~d~~G~~v~~~~aIiIlTsn~f~~~s~~~sp~~~--~~~~ 799 (854)
-=.|++ .+.-+||.+|-.++...+.=.|-| +++.
T Consensus 317 dGFdsr------gDvKvimATnrie~LDPaLiRPGrIDrKIe 352 (440)
T KOG0726|consen 317 DGFDSR------GDVKVIMATNRIETLDPALIRPGRIDRKIE 352 (440)
T ss_pred cCcccc------CCeEEEEecccccccCHhhcCCCccccccc
Confidence 111222 466799999988888777544433 4444
No 247
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=1.5e-05 Score=87.86 Aligned_cols=126 Identities=12% Similarity=0.125 Sum_probs=77.7
Q ss_pred CCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccccccccc----chHHHHHHHHHHHHHHHhhhCCCeEEE
Q 003038 228 RNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHM----NRVEVEQRVEEIKNLVRSCLGRGIVLN 303 (854)
Q Consensus 228 ~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~----~rge~E~rl~~l~~~~~~~~~~~~ILf 303 (854)
+|++++||||+|||.+++.||++ .| ||..-+..| .-.+-=.++.+||+-++.+ .+|.+||
T Consensus 385 RNilfyGPPGTGKTm~ArelAr~--SG-------------lDYA~mTGGDVAPlG~qaVTkiH~lFDWakkS-~rGLllF 448 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFARELARH--SG-------------LDYAIMTGGDVAPLGAQAVTKIHKLFDWAKKS-RRGLLLF 448 (630)
T ss_pred hheeeeCCCCCCchHHHHHHHhh--cC-------------CceehhcCCCccccchHHHHHHHHHHHHHhhc-ccceEEE
Confidence 48999999999999999999986 12 233323322 1223456899999999987 7899999
Q ss_pred eCccccc-cccccccccccccchhhhHHHHHHHhhc-cc-CCCCceEEEEEecCHHHHHHhhccCCchhhhhcc-CCCCC
Q 003038 304 LGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLV-CG-IGENARFWLMGIATFQSYMRCKSGHPSLETLWSL-HPLTI 379 (854)
Q Consensus 304 idel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll-~~-~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~-~~v~i 379 (854)
|||.+.+ -.++.. |. .+..-.-+..|| .. .-.+ +|.|+-||+-.+ ..|.++.. |+ +.|..
T Consensus 449 IDEADAFLceRnkt-------ym-SEaqRsaLNAlLfRTGdqSr-divLvlAtNrpg-----dlDsAV~D--Ride~veF 512 (630)
T KOG0742|consen 449 IDEADAFLCERNKT-------YM-SEAQRSALNALLFRTGDQSR-DIVLVLATNRPG-----DLDSAVND--RIDEVVEF 512 (630)
T ss_pred ehhhHHHHHHhchh-------hh-cHHHHHHHHHHHHHhccccc-ceEEEeccCCcc-----chhHHHHh--hhhheeec
Confidence 9999999 333221 11 112223344555 22 2223 688888887544 23556655 44 33444
Q ss_pred CCchHH
Q 003038 380 PAGSLS 385 (854)
Q Consensus 380 ~~~sl~ 385 (854)
|=|.-+
T Consensus 513 pLPGeE 518 (630)
T KOG0742|consen 513 PLPGEE 518 (630)
T ss_pred CCCChH
Confidence 444433
No 248
>PRK06893 DNA replication initiation factor; Validated
Probab=98.01 E-value=2.1e-05 Score=83.25 Aligned_cols=118 Identities=14% Similarity=0.096 Sum_probs=66.9
Q ss_pred ceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeCcccc
Q 003038 230 FVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLGDLEW 309 (854)
Q Consensus 230 ~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfidel~~ 309 (854)
.+|+||||+|||.++++++..+.+.. ..+.+++++ . ++....++++.+++ .-+|+|||++.
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~~~~-----~~~~y~~~~--~--------~~~~~~~~~~~~~~----~dlLilDDi~~ 102 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYLLNQ-----RTAIYIPLS--K--------SQYFSPAVLENLEQ----QDLVCLDDLQA 102 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcC-----CCeEEeeHH--H--------hhhhhHHHHhhccc----CCEEEEeChhh
Confidence 47999999999999999998865531 234444442 1 11122234444443 45899999999
Q ss_pred c-cccccccccccccchhhhHHHHHHHhhccc--CCCCceEEEEEecCHHHHHHhhccCCchhhhhccC---CCCCCCch
Q 003038 310 A-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG--IGENARFWLMGIATFQSYMRCKSGHPSLETLWSLH---PLTIPAGS 383 (854)
Q Consensus 310 l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~--~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~~---~v~i~~~s 383 (854)
+ +... ....+-.++.. ..+. .+.+|++++...... ...|.|.+ |+. .+.++.+.
T Consensus 103 ~~~~~~---------------~~~~l~~l~n~~~~~~~-~illits~~~p~~l~--~~~~~L~s--Rl~~g~~~~l~~pd 162 (229)
T PRK06893 103 VIGNEE---------------WELAIFDLFNRIKEQGK-TLLLISADCSPHALS--IKLPDLAS--RLTWGEIYQLNDLT 162 (229)
T ss_pred hcCChH---------------HHHHHHHHHHHHHHcCC-cEEEEeCCCChHHcc--ccchhHHH--HHhcCCeeeCCCCC
Confidence 8 5422 11123334421 1221 466777765433332 24688888 443 45566655
Q ss_pred HHH
Q 003038 384 LSL 386 (854)
Q Consensus 384 l~~ 386 (854)
.+.
T Consensus 163 ~e~ 165 (229)
T PRK06893 163 DEQ 165 (229)
T ss_pred HHH
Confidence 443
No 249
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.00 E-value=1.6e-05 Score=96.31 Aligned_cols=106 Identities=16% Similarity=0.165 Sum_probs=69.1
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEE
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLI 738 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~Vili 738 (854)
.++|+||+|+|||.+|+++|..+ ..+|+.++.+.|. +.+. +.+......+.+..+..+.+||||
T Consensus 187 gill~G~~G~GKt~~~~~~a~~~---~~~f~~is~~~~~-------~~~~------g~~~~~~~~~f~~a~~~~P~IifI 250 (644)
T PRK10733 187 GVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDFV-------EMFV------GVGASRVRDMFEQAKKAAPCIIFI 250 (644)
T ss_pred cEEEECCCCCCHHHHHHHHHHHc---CCCEEEEehHHhH-------Hhhh------cccHHHHHHHHHHHHhcCCcEEEe
Confidence 38999999999999999999987 3578888887665 2110 001111224555556667799999
Q ss_pred ecCCCCCH--------------HHHHHHHHhhhcCeEecCCCceeecCCeEEEEecCCCCCCCCC
Q 003038 739 EDVEQADY--------------CSQKGFKRAIESGRIVTSSGDEVSLGDAIVILSCESFSSRSRA 789 (854)
Q Consensus 739 DEieka~~--------------~v~~~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn~f~~~s~~ 789 (854)
||||.... .+.+.|+.-||. +. +-.+.|||.|||.-+....+
T Consensus 251 DEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg--~~-------~~~~vivIaaTN~p~~lD~A 306 (644)
T PRK10733 251 DEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDG--FE-------GNEGIIVIAATNRPDVLDPA 306 (644)
T ss_pred hhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhc--cc-------CCCCeeEEEecCChhhcCHH
Confidence 99998732 245556555552 11 12357889999975544433
No 250
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.00 E-value=4.7e-05 Score=91.72 Aligned_cols=152 Identities=10% Similarity=0.121 Sum_probs=93.8
Q ss_pred hhcCcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCC-------CCc
Q 003038 615 ALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGS-------HNN 687 (854)
Q Consensus 615 ~L~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~-------~~~ 687 (854)
++-.+++|.++=+..|+..|..+-.|- .|...|+++|+||+|||.+++.+.+.|-.. .-.
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIkgs-------------gpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~ 818 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIKQS-------------GSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFN 818 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHhcC-------------CCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCce
Confidence 445789999999999999998765431 233467899999999999999988776311 134
Q ss_pred eEEEccccccCcCCCccc-cccccccCCCCCCc---hHHHHHHHHH--cCCCEEEEEecCCCCCHHHHHHHHHhhhcCeE
Q 003038 688 FVSIALSSFSSTRADSTE-DSRNKRSRDEQSCS---YIERFAEAVS--NNPHRVFLIEDVEQADYCSQKGFKRAIESGRI 761 (854)
Q Consensus 688 ~i~id~s~~~~~~~~s~e-~~~~~rl~~~~g~g---~~e~L~eav~--~~p~~ViliDEieka~~~v~~~Ll~~le~G~l 761 (854)
++.|+|..+......-.. -..+....++.+.. +.+.++..+. .....||+|||||.+...-|..|+..|+--..
T Consensus 819 vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~ 898 (1164)
T PTZ00112 819 VFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTK 898 (1164)
T ss_pred EEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhc
Confidence 688998765421000000 00010111222321 2234444442 23356999999999987778888888874221
Q ss_pred ecCCCceeecCCeEEEEecCCCCCCC
Q 003038 762 VTSSGDEVSLGDAIVILSCESFSSRS 787 (854)
Q Consensus 762 ~d~~G~~v~~~~aIiIlTsn~f~~~s 787 (854)
. -...+||..||.++-+.
T Consensus 899 s--------~SKLiLIGISNdlDLpe 916 (1164)
T PTZ00112 899 I--------NSKLVLIAISNTMDLPE 916 (1164)
T ss_pred c--------CCeEEEEEecCchhcch
Confidence 1 13467888898765444
No 251
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=97.99 E-value=8.3e-06 Score=97.60 Aligned_cols=114 Identities=15% Similarity=0.158 Sum_probs=75.6
Q ss_pred ceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCC------CchHHHHHHHHHc
Q 003038 657 ETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQS------CSYIERFAEAVSN 730 (854)
Q Consensus 657 ~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g------~g~~e~L~eav~~ 730 (854)
+|.+|+.|++|+|||.+|+.|++.+-+ ..+|+++..+... . +++++-. .|....-...+-+
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~-~~pfv~i~~~~t~--------d----~L~G~idl~~~~~~g~~~~~~G~L~~ 82 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPP-IMPFVELPLGVTE--------D----RLIGGIDVEESLAGGQRVTQPGLLDE 82 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCc-CCCeEecCcccch--------h----hcccchhhhhhhhcCcccCCCCCeee
Confidence 789999999999999999999998733 3468888753111 0 1110000 0000000011223
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecC-CCceeec-CCeEEEEecCCC
Q 003038 731 NPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTS-SGDEVSL-GDAIVILSCESF 783 (854)
Q Consensus 731 ~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~-~G~~v~~-~~aIiIlTsn~f 783 (854)
....|+|+|||+++++.+|+.|+++|++|.++-. .|....+ .+..+|.|+|.-
T Consensus 83 A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~ 137 (589)
T TIGR02031 83 APRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPA 137 (589)
T ss_pred CCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCc
Confidence 3457999999999999999999999999987643 3555544 367788888753
No 252
>PF13173 AAA_14: AAA domain
Probab=97.98 E-value=1.9e-05 Score=75.63 Aligned_cols=84 Identities=17% Similarity=0.288 Sum_probs=58.1
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEE
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLI 738 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~Vili 738 (854)
++++.||.|||||++++.+++.+. ...+++.+++.... .... ... ...+.+.+. -.....+|||
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~-------~~~~----~~~---~~~~~~~~~-~~~~~~~i~i 67 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPR-------DRRL----ADP---DLLEYFLEL-IKPGKKYIFI 67 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHH-------HHHH----hhh---hhHHHHHHh-hccCCcEEEE
Confidence 688999999999999999998886 55778888887544 1000 000 011112222 1124689999
Q ss_pred ecCCCCCHHHHHHHHHhhhcC
Q 003038 739 EDVEQADYCSQKGFKRAIESG 759 (854)
Q Consensus 739 DEieka~~~v~~~Ll~~le~G 759 (854)
|||++++ +....+....+++
T Consensus 68 DEiq~~~-~~~~~lk~l~d~~ 87 (128)
T PF13173_consen 68 DEIQYLP-DWEDALKFLVDNG 87 (128)
T ss_pred ehhhhhc-cHHHHHHHHHHhc
Confidence 9999996 7888898888865
No 253
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.97 E-value=3.2e-05 Score=84.18 Aligned_cols=110 Identities=15% Similarity=0.192 Sum_probs=80.6
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCC----CCCC-chHHHHHHHHHcCC
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRD----EQSC-SYIERFAEAVSNNP 732 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~----~~g~-g~~e~L~eav~~~p 732 (854)
..+|+.|.||+||..+||+--..--....+|+.++|.... +...-+.+.+ ..|+ |+ +....
T Consensus 228 APLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lP-------e~~aEsElFG~apg~~gk~Gf-------fE~An 293 (511)
T COG3283 228 APLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLP-------EDAAESELFGHAPGDEGKKGF-------FEQAN 293 (511)
T ss_pred CCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCc-------hhHhHHHHhcCCCCCCCccch-------hhhcc
Confidence 4689999999999999997665544567899999999887 3333333331 1233 43 22334
Q ss_pred CEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeecCCeEEEEecC
Q 003038 733 HRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDAIVILSCE 781 (854)
Q Consensus 733 ~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn 781 (854)
..-||+|||-.++|..|..|++.+.+|.++--.++.=-.-|+.||++|.
T Consensus 294 gGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq 342 (511)
T COG3283 294 GGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQ 342 (511)
T ss_pred CCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEeccc
Confidence 5678899999999999999999999999996433333344788999884
No 254
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.97 E-value=1.3e-05 Score=83.43 Aligned_cols=160 Identities=11% Similarity=0.150 Sum_probs=86.6
Q ss_pred cHHHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCC-C---cccCCceEEEcccccc-------------
Q 003038 211 RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDV-P---EALRDVKCLPLSISSF------------- 273 (854)
Q Consensus 211 r~~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~v-p---~~L~~~~~~~l~~~~l------------- 273 (854)
|++|++++.+++.+...+.++|+||.|+|||++++.+...+..... . ..+..... -....+
T Consensus 4 R~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~--~~~~~~~~~~~~~~~l~~~ 81 (234)
T PF01637_consen 4 REKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNE--SSLRSFIEETSLADELSEA 81 (234)
T ss_dssp -HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHH--HHHHHHHHHHHHHCHCHHH
T ss_pred HHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhh--hHHHHHHHHHHHHHHHHHH
Confidence 9999999999998766788999999999999999999998744221 1 11111100 000000
Q ss_pred cc-------------cchHHHHHHHHHHHHHHHhhhCCCeEEEeCcccccc-ccccccccccccchhhhHHHHHHHhhcc
Q 003038 274 RH-------------MNRVEVEQRVEEIKNLVRSCLGRGIVLNLGDLEWAE-FRASSSEQVRGYYCSIEHIIMEIGKLVC 339 (854)
Q Consensus 274 ~~-------------~~rge~E~rl~~l~~~~~~~~~~~~ILfidel~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 339 (854)
.. .....+...+..+++.+... +..+||+|||++++. .-... ......+.+++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~iiviDe~~~~~~~~~~~-----------~~~~~~l~~~~~ 149 (234)
T PF01637_consen 82 LGISIPSITLEKISKDLSEDSFSALERLLEKLKKK-GKKVIIVIDEFQYLAIASEED-----------KDFLKSLRSLLD 149 (234)
T ss_dssp HHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHC-HCCEEEEEETGGGGGBCTTTT-----------HHHHHHHHHHHH
T ss_pred HhhhcccccchhhhhcchhhHHHHHHHHHHHHHhc-CCcEEEEEecHHHHhhcccch-----------HHHHHHHHHHHh
Confidence 00 01244577788888888875 456999999999994 21110 113344555553
Q ss_pred c--CCCCceEEEEEecCHHHHHH-hhccCCchhhhhccCCCCCCCchHHHHh
Q 003038 340 G--IGENARFWLMGIATFQSYMR-CKSGHPSLETLWSLHPLTIPAGSLSLSL 388 (854)
Q Consensus 340 ~--~~g~g~l~lIgatT~~ey~k-~~~~~pale~~~~~~~v~i~~~sl~~al 388 (854)
. ... .+.+|.+++...+.. +...++.+-. +++.+.+++-+...+.
T Consensus 150 ~~~~~~--~~~~v~~~S~~~~~~~~~~~~~~~~~--~~~~~~l~~l~~~e~~ 197 (234)
T PF01637_consen 150 SLLSQQ--NVSIVITGSSDSLMEEFLDDKSPLFG--RFSHIELKPLSKEEAR 197 (234)
T ss_dssp H----T--TEEEEEEESSHHHHHHTT-TTSTTTT-----EEEE----HHHHH
T ss_pred hccccC--CceEEEECCchHHHHHhhcccCcccc--ccceEEEeeCCHHHHH
Confidence 2 223 466666666554443 3444454544 5555777765555544
No 255
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.96 E-value=1.7e-05 Score=87.35 Aligned_cols=80 Identities=8% Similarity=0.045 Sum_probs=49.8
Q ss_pred cHHHHHHHHHHhh-----ccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHH
Q 003038 211 RNEDVMYVIENLM-----SKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRV 285 (854)
Q Consensus 211 r~~ei~~v~~~L~-----r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl 285 (854)
+++.+.++...+. .+.-++++|+||||||||++++.+|..+. ..+..++...+. ..+
T Consensus 9 ~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~----------~~~~~~~~~~~~--~~~------ 70 (305)
T TIGR00635 9 QEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMG----------VNLKITSGPALE--KPG------ 70 (305)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhC----------CCEEEeccchhc--Cch------
Confidence 6666666666554 12345789999999999999999998752 222222221111 112
Q ss_pred HHHHHHHHhhhCCCeEEEeCccccc
Q 003038 286 EEIKNLVRSCLGRGIVLNLGDLEWA 310 (854)
Q Consensus 286 ~~l~~~~~~~~~~~~ILfidel~~l 310 (854)
++...+... +.+.||||||+|.+
T Consensus 71 -~l~~~l~~~-~~~~vl~iDEi~~l 93 (305)
T TIGR00635 71 -DLAAILTNL-EEGDVLFIDEIHRL 93 (305)
T ss_pred -hHHHHHHhc-ccCCEEEEehHhhh
Confidence 222333333 45779999999999
No 256
>PRK08727 hypothetical protein; Validated
Probab=97.96 E-value=4.4e-05 Score=80.99 Aligned_cols=78 Identities=13% Similarity=0.178 Sum_probs=52.6
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEE
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFL 737 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~Vil 737 (854)
-|++|+||+|+|||.++.+++..+.......+.+.+.++. . .+. ...+.+ ..+.+|+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~-------~-------------~~~-~~~~~l--~~~dlLi 98 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA-------G-------------RLR-DALEAL--EGRSLVA 98 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh-------h-------------hHH-HHHHHH--hcCCEEE
Confidence 4899999999999999999998886655555555544332 0 011 112222 3346999
Q ss_pred EecCCCCC--HHHHHHHHHhhhc
Q 003038 738 IEDVEQAD--YCSQKGFKRAIES 758 (854)
Q Consensus 738 iDEieka~--~~v~~~Ll~~le~ 758 (854)
||||+... +.-+..|+..+..
T Consensus 99 IDDi~~l~~~~~~~~~lf~l~n~ 121 (233)
T PRK08727 99 LDGLESIAGQREDEVALFDFHNR 121 (233)
T ss_pred EeCcccccCChHHHHHHHHHHHH
Confidence 99999874 4556677777764
No 257
>PRK05642 DNA replication initiation factor; Validated
Probab=97.96 E-value=2e-05 Score=83.66 Aligned_cols=121 Identities=12% Similarity=0.089 Sum_probs=76.7
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeCc
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLGD 306 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfide 306 (854)
.++++|+|++|+|||.++.+++..+.. ++.+++-++...|... ...+++.+++. -+|+|||
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~-------~~~~v~y~~~~~~~~~--------~~~~~~~~~~~----d~LiiDD 105 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQ-------RGEPAVYLPLAELLDR--------GPELLDNLEQY----ELVCLDD 105 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh-------CCCcEEEeeHHHHHhh--------hHHHHHhhhhC----CEEEEec
Confidence 356789999999999999999987653 2456666666655432 23455555543 3799999
Q ss_pred cccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchhhhhcc---CCCCCCCc
Q 003038 307 LEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLETLWSL---HPLTIPAG 382 (854)
Q Consensus 307 l~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~---~~v~i~~~ 382 (854)
++.+ +... ...++-.++-....+|...+|++++...+.. ...|.|.+ || ..+.|.++
T Consensus 106 i~~~~~~~~---------------~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~--~~~~~L~S--Rl~~gl~~~l~~~ 166 (234)
T PRK05642 106 LDVIAGKAD---------------WEEALFHLFNRLRDSGRRLLLAASKSPRELP--IKLPDLKS--RLTLALVFQMRGL 166 (234)
T ss_pred hhhhcCChH---------------HHHHHHHHHHHHHhcCCEEEEeCCCCHHHcC--ccCccHHH--HHhcCeeeecCCC
Confidence 9988 5432 1223444442211222588888887554432 35799998 77 66666665
Q ss_pred hHH
Q 003038 383 SLS 385 (854)
Q Consensus 383 sl~ 385 (854)
+.+
T Consensus 167 ~~e 169 (234)
T PRK05642 167 SDE 169 (234)
T ss_pred CHH
Confidence 543
No 258
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=1e-05 Score=91.01 Aligned_cols=99 Identities=14% Similarity=0.288 Sum_probs=62.6
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHc-CCCEEEE
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSN-NPHRVFL 737 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~-~p~~Vil 737 (854)
-+||+||||+|||.|.-|+|..| +-.+--+++++.. .. ..|...+.. .+.+||+
T Consensus 237 GYLLYGPPGTGKSS~IaAmAn~L---~ydIydLeLt~v~-------~n---------------~dLr~LL~~t~~kSIiv 291 (457)
T KOG0743|consen 237 GYLLYGPPGTGKSSFIAAMANYL---NYDIYDLELTEVK-------LD---------------SDLRHLLLATPNKSILL 291 (457)
T ss_pred cceeeCCCCCCHHHHHHHHHhhc---CCceEEeeecccc-------Cc---------------HHHHHHHHhCCCCcEEE
Confidence 37999999999999999999988 2233334443222 00 124444444 4578999
Q ss_pred EecCCCC----C--------------HHHHHHHHHhhhcCeEecCCCceeecCCeEEEEecCCCCCCCCC
Q 003038 738 IEDVEQA----D--------------YCSQKGFKRAIESGRIVTSSGDEVSLGDAIVILSCESFSSRSRA 789 (854)
Q Consensus 738 iDEieka----~--------------~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn~f~~~s~~ 789 (854)
|++||.+ . +-.+.+||.++| |--..+ | .--|||||+|-.+-.-.|
T Consensus 292 IEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiD-GlwSsc-g-----~ERIivFTTNh~EkLDPA 354 (457)
T KOG0743|consen 292 IEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLD-GLWSSC-G-----DERIIVFTTNHKEKLDPA 354 (457)
T ss_pred EeecccccccccccccccccccCCcceeehHHhhhhhc-cccccC-C-----CceEEEEecCChhhcCHh
Confidence 9999976 1 123456777776 322222 1 245899999976655444
No 259
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=8.8e-05 Score=83.74 Aligned_cols=148 Identities=11% Similarity=0.218 Sum_probs=93.0
Q ss_pred CCcHHHHHHHHHHhhcc----CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccccccccc--------
Q 003038 209 PIRNEDVMYVIENLMSK----RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHM-------- 276 (854)
Q Consensus 209 pvr~~ei~~v~~~L~r~----~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~-------- 276 (854)
|.||+|++++..+|.-. ...|++++|+||+|||++++-+++++..-. + +..++.+++-.+...
T Consensus 20 ~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~-~----~~~~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 20 PHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESS-A----NVEVVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred cccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhh-c----cCceEEEeeeeCCCHHHHHHHHH
Confidence 44999999999887644 667899999999999999999999987641 1 112555555332211
Q ss_pred -------chH-HHHHHHHHHHHHHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhccc-CCCCce
Q 003038 277 -------NRV-EVEQRVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG-IGENAR 346 (854)
Q Consensus 277 -------~rg-e~E~rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~g~g~ 346 (854)
..| -.-+-++.+.+.+... ++.+|+.+||+..| .... .-+=.|+.. .....+
T Consensus 95 ~~~~~~p~~g~~~~~~~~~l~~~~~~~-~~~~IvvLDEid~L~~~~~-----------------~~LY~L~r~~~~~~~~ 156 (366)
T COG1474 95 NKLGKVPLTGDSSLEILKRLYDNLSKK-GKTVIVILDEVDALVDKDG-----------------EVLYSLLRAPGENKVK 156 (366)
T ss_pred HHcCCCCCCCCchHHHHHHHHHHHHhc-CCeEEEEEcchhhhccccc-----------------hHHHHHHhhcccccee
Confidence 111 1122333344444443 57899999999999 5432 112234422 112236
Q ss_pred EEEEEecCHHHHHHhhccCCchhhhhccCCCCCCC
Q 003038 347 FWLMGIATFQSYMRCKSGHPSLETLWSLHPLTIPA 381 (854)
Q Consensus 347 l~lIgatT~~ey~k~~~~~pale~~~~~~~v~i~~ 381 (854)
+-+||.++.-.|..+ -+|.+....+...|..|+
T Consensus 157 v~vi~i~n~~~~~~~--ld~rv~s~l~~~~I~F~p 189 (366)
T COG1474 157 VSIIAVSNDDKFLDY--LDPRVKSSLGPSEIVFPP 189 (366)
T ss_pred EEEEEEeccHHHHHH--hhhhhhhccCcceeeeCC
Confidence 899999998888654 678887733333344554
No 260
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.93 E-value=5.6e-05 Score=84.07 Aligned_cols=95 Identities=12% Similarity=0.044 Sum_probs=59.9
Q ss_pred cHHHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccc-------------
Q 003038 211 RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMN------------- 277 (854)
Q Consensus 211 r~~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~------------- 277 (854)
+++.++++...+.+++-.+++|+||||+|||++++.+++.+.... .+..++.++...+....
T Consensus 20 ~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 94 (337)
T PRK12402 20 QDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDP-----WENNFTEFNVADFFDQGKKYLVEDPRFAHF 94 (337)
T ss_pred CHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcc-----cccceEEechhhhhhcchhhhhcCcchhhh
Confidence 667777777777665545899999999999999999999875321 12345666655443211
Q ss_pred hHH-------HHHHHHHHHHHHHhhh---CCCeEEEeCccccc
Q 003038 278 RVE-------VEQRVEEIKNLVRSCL---GRGIVLNLGDLEWA 310 (854)
Q Consensus 278 rge-------~E~rl~~l~~~~~~~~---~~~~ILfidel~~l 310 (854)
.+. ....+++++....... +..-||+|||++.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l 137 (337)
T PRK12402 95 LGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEAL 137 (337)
T ss_pred hhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccC
Confidence 111 1223444444443321 23458999999998
No 261
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=1.1e-05 Score=86.78 Aligned_cols=84 Identities=10% Similarity=0.102 Sum_probs=64.8
Q ss_pred ceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhh---CCCeEEEeCc
Q 003038 230 FVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCL---GRGIVLNLGD 306 (854)
Q Consensus 230 ~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~---~~~~ILfide 306 (854)
++|+||||+|||++.++|||++.=. .-+.-...+++.++.-+|.+.+.+|.-+-+..+|+.+.... +.-|.+.|||
T Consensus 180 iLlhGPPGTGKTSLCKaLaQkLSIR-~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDE 258 (423)
T KOG0744|consen 180 ILLHGPPGTGKTSLCKALAQKLSIR-TNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDE 258 (423)
T ss_pred EEEeCCCCCChhHHHHHHHHhheee-ecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHH
Confidence 5899999999999999999997532 12334456899999999999988888877777777666533 3346677899
Q ss_pred cccc-cccc
Q 003038 307 LEWA-EFRA 314 (854)
Q Consensus 307 l~~l-~~~~ 314 (854)
+..| -++.
T Consensus 259 VESLa~aR~ 267 (423)
T KOG0744|consen 259 VESLAAART 267 (423)
T ss_pred HHHHHHHHH
Confidence 9999 5553
No 262
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=4.5e-05 Score=88.85 Aligned_cols=141 Identities=13% Similarity=0.083 Sum_probs=77.8
Q ss_pred cHHHHHHHH-HHhhccCcCC-ceeecCCCCCHHHHHHHHHHHHHcCCCCc--------------ccCCceEEEccccccc
Q 003038 211 RNEDVMYVI-ENLMSKRKRN-FVVVGECLASIEGVVRGVIDKIEKGDVPE--------------ALRDVKCLPLSISSFR 274 (854)
Q Consensus 211 r~~ei~~v~-~~L~r~~k~n-~vLvGe~GvGKta~v~~la~~i~~~~vp~--------------~L~~~~~~~l~~~~l~ 274 (854)
..+.+.+.+ ..+.+.+-.+ .+|+||||+|||++|+.+|..+.....+. ......++.++.++
T Consensus 18 Gq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~-- 95 (472)
T PRK14962 18 GQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAAS-- 95 (472)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcc--
Confidence 445554444 4444444434 59999999999999999999876432110 00112455554431
Q ss_pred ccchHHHHHHHHHHHHHHHhhh--CCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEE
Q 003038 275 HMNRVEVEQRVEEIKNLVRSCL--GRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMG 351 (854)
Q Consensus 275 ~~~rge~E~rl~~l~~~~~~~~--~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIg 351 (854)
.+|- ..++++++.+.... +..-||||||+|.+ ... ...+-..+....+ .+.+|+
T Consensus 96 --~~gi--d~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a-----------------~~~LLk~LE~p~~--~vv~Il 152 (472)
T PRK14962 96 --NRGI--DEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEA-----------------FNALLKTLEEPPS--HVVFVL 152 (472)
T ss_pred --cCCH--HHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHH-----------------HHHHHHHHHhCCC--cEEEEE
Confidence 2221 12344555554321 34579999999999 421 1122333321123 588888
Q ss_pred ecCHHHHHHhhccCCchhhhhccCCCCCCCch
Q 003038 352 IATFQSYMRCKSGHPSLETLWSLHPLTIPAGS 383 (854)
Q Consensus 352 atT~~ey~k~~~~~pale~~~~~~~v~i~~~s 383 (854)
+||... ...|++.+ |++.+.+...+
T Consensus 153 attn~~-----kl~~~L~S--R~~vv~f~~l~ 177 (472)
T PRK14962 153 ATTNLE-----KVPPTIIS--RCQVIEFRNIS 177 (472)
T ss_pred EeCChH-----hhhHHHhc--CcEEEEECCcc
Confidence 887422 23677777 66666655443
No 263
>PRK06526 transposase; Provisional
Probab=97.92 E-value=1.1e-05 Score=86.70 Aligned_cols=87 Identities=9% Similarity=0.109 Sum_probs=55.1
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEE
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFL 737 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~Vil 737 (854)
..++|+||+|+|||.+|.+|+..+......+..+.++++. +..... . ..+ .+...+ ..+ ..+.|++
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~-------~~l~~~--~-~~~-~~~~~l-~~l--~~~dlLI 164 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWV-------ARLAAA--H-HAG-RLQAEL-VKL--GRYPLLI 164 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHH-------HHHHHH--H-hcC-cHHHHH-HHh--ccCCEEE
Confidence 3789999999999999999998876544444444444332 111100 0 001 111122 112 3468999
Q ss_pred EecCCCC--CHHHHHHHHHhhhc
Q 003038 738 IEDVEQA--DYCSQKGFKRAIES 758 (854)
Q Consensus 738 iDEieka--~~~v~~~Ll~~le~ 758 (854)
|||++.. ++..++.|.++++.
T Consensus 165 IDD~g~~~~~~~~~~~L~~li~~ 187 (254)
T PRK06526 165 VDEVGYIPFEPEAANLFFQLVSS 187 (254)
T ss_pred EcccccCCCCHHHHHHHHHHHHH
Confidence 9999976 57888899999974
No 264
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=5.6e-06 Score=93.75 Aligned_cols=152 Identities=17% Similarity=0.209 Sum_probs=88.4
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhC-CCC------ceEE
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFG-SHN------NFVS 690 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg-~~~------~~i~ 690 (854)
+.|+||+.|...+--+-. | .+.+||+||||+|||.+|+-|..+|-- +.. .+.+
T Consensus 179 ~DV~GQ~~AKrAleiAAA----G----------------gHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s 238 (490)
T COG0606 179 KDVKGQEQAKRALEIAAA----G----------------GHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHS 238 (490)
T ss_pred hhhcCcHHHHHHHHHHHh----c----------------CCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhh
Confidence 468999999887654422 2 247999999999999999988765521 000 1111
Q ss_pred Ecccccc-----CcCCCccccccc--cccCCCCCCchHHHHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEec
Q 003038 691 IALSSFS-----STRADSTEDSRN--KRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVT 763 (854)
Q Consensus 691 id~s~~~-----~~~~~s~e~~~~--~rl~~~~g~g~~e~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d 763 (854)
++...+. ..+..-.-.|+. ..++++.+ .-....|....+.|+||||+-...+.+.+.|.+-||+|.++-
T Consensus 239 ~~g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~----~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~I 314 (490)
T COG0606 239 LAGDLHEGCPLKIHRPFRAPHHSASLAALVGGGG----VPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIII 314 (490)
T ss_pred hcccccccCccceeCCccCCCccchHHHHhCCCC----CCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccCcEEE
Confidence 1111000 000000000111 11221110 011223444557899999999999999999999999999986
Q ss_pred CC-Cceee-cCCeEEEEecCC-----CCCCCCC--CCCC
Q 003038 764 SS-GDEVS-LGDAIVILSCES-----FSSRSRA--CSPP 793 (854)
Q Consensus 764 ~~-G~~v~-~~~aIiIlTsn~-----f~~~s~~--~sp~ 793 (854)
+. +..|. .-+-++|++.|. .....+. |+|.
T Consensus 315 sRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~ 353 (490)
T COG0606 315 SRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPR 353 (490)
T ss_pred EEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHH
Confidence 53 33444 457778888884 3444444 5554
No 265
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=1.4e-05 Score=85.90 Aligned_cols=75 Identities=9% Similarity=0.092 Sum_probs=57.8
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccccccc-ccchHH-HHHHHHHHHHHHHhhh--CCCeE
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFR-HMNRVE-VEQRVEEIKNLVRSCL--GRGIV 301 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~-~~~rge-~E~rl~~l~~~~~~~~--~~~~I 301 (854)
.|.|++|+||.|+|||-+++-||..+ ++.|---|..+|. |||.|| +|.=+..|+..+.-.. ...=|
T Consensus 96 ~KSNILLiGPTGsGKTlLAqTLAk~L----------nVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGI 165 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQTLAKIL----------NVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGI 165 (408)
T ss_pred eeccEEEECCCCCcHHHHHHHHHHHh----------CCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCe
Confidence 69999999999999999999999764 4556666666664 789987 8888888877643111 12338
Q ss_pred EEeCccccc
Q 003038 302 LNLGDLEWA 310 (854)
Q Consensus 302 Lfidel~~l 310 (854)
+|||||+-+
T Consensus 166 IyIDEIDKI 174 (408)
T COG1219 166 IYIDEIDKI 174 (408)
T ss_pred EEEechhhh
Confidence 999999999
No 266
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.88 E-value=1.2e-05 Score=76.49 Aligned_cols=103 Identities=14% Similarity=0.152 Sum_probs=65.4
Q ss_pred ceeEEEecCCCchHHHHHHHHHHHHhCC-----CCceEEEccccccCcCCCccccccccccC--CCCC-C---chHHHHH
Q 003038 657 ETWLFFQGVDADAKEKIAKELARLVFGS-----HNNFVSIALSSFSSTRADSTEDSRNKRSR--DEQS-C---SYIERFA 725 (854)
Q Consensus 657 ~~~lLf~Gp~GvGKt~lAr~LA~~lfg~-----~~~~i~id~s~~~~~~~~s~e~~~~~rl~--~~~g-~---g~~e~L~ 725 (854)
.+.++++||+|+|||.+++.+++.+... ...++.+++......... -..+.... .... . ...+.+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~l~~~~~~~~~~~~l~~~~~ 80 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDF---AQEILEALGLPLKSRQTSDELRSLLI 80 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHH---HHHHHHHHT-SSSSTS-HHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHH---HHHHHHHhCccccccCCHHHHHHHHH
Confidence 3588999999999999999999887421 456777777654410000 00111111 1111 1 1113677
Q ss_pred HHHHcCCCEEEEEecCCCC-CHHHHHHHHHhhhcCeEe
Q 003038 726 EAVSNNPHRVFLIEDVEQA-DYCSQKGFKRAIESGRIV 762 (854)
Q Consensus 726 eav~~~p~~ViliDEieka-~~~v~~~Ll~~le~G~l~ 762 (854)
+.+.+....||+|||+|.+ +..+.+.|+..+++..+.
T Consensus 81 ~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~ 118 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIK 118 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEE
T ss_pred HHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCe
Confidence 7888887789999999999 999999998888854443
No 267
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.87 E-value=3e-05 Score=81.65 Aligned_cols=77 Identities=14% Similarity=0.159 Sum_probs=52.4
Q ss_pred cHHHHHHHHHHhhc--cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHH
Q 003038 211 RNEDVMYVIENLMS--KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEI 288 (854)
Q Consensus 211 r~~ei~~v~~~L~r--~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l 288 (854)
+++++...+.-+.+ ...++++|+||+|||||+++++++...... +..++.++...+.. .
T Consensus 24 ~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~-------~~~~~~i~~~~~~~--------~---- 84 (227)
T PRK08903 24 ENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG-------GRNARYLDAASPLL--------A---- 84 (227)
T ss_pred CcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-------CCcEEEEehHHhHH--------H----
Confidence 45566666666654 456789999999999999999999876442 34566665554321 1
Q ss_pred HHHHHhhhCCCeEEEeCccccc
Q 003038 289 KNLVRSCLGRGIVLNLGDLEWA 310 (854)
Q Consensus 289 ~~~~~~~~~~~~ILfidel~~l 310 (854)
+... ..+-+|+|||+|++
T Consensus 85 ~~~~----~~~~~liiDdi~~l 102 (227)
T PRK08903 85 FDFD----PEAELYAVDDVERL 102 (227)
T ss_pred Hhhc----ccCCEEEEeChhhc
Confidence 1111 23458999999999
No 268
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.86 E-value=7.1e-05 Score=90.15 Aligned_cols=63 Identities=8% Similarity=0.101 Sum_probs=43.6
Q ss_pred cHHHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccc
Q 003038 211 RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSF 273 (854)
Q Consensus 211 r~~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l 273 (854)
++..+++++..+......+++|+||||||||++++.+............-.+..++.++...+
T Consensus 159 qs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l 221 (615)
T TIGR02903 159 QERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL 221 (615)
T ss_pred CcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc
Confidence 667777777777766677899999999999999999886643211111112456777776544
No 269
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.86 E-value=3.3e-05 Score=85.14 Aligned_cols=157 Identities=11% Similarity=0.117 Sum_probs=90.5
Q ss_pred CCCCC---cHHHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccccccccc--chHH
Q 003038 206 SLDPI---RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHM--NRVE 280 (854)
Q Consensus 206 ~ldpv---r~~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~--~rge 280 (854)
+.||- +.+.++.|+.-|.. +++++|.|+||+|||++++.||.++ +..++.+++..-... ..|.
T Consensus 42 ~~d~~y~f~~~~~~~vl~~l~~--~~~ilL~G~pGtGKTtla~~lA~~l----------~~~~~rV~~~~~l~~~DliG~ 109 (327)
T TIGR01650 42 DIDPAYLFDKATTKAICAGFAY--DRRVMVQGYHGTGKSTHIEQIAARL----------NWPCVRVNLDSHVSRIDLVGK 109 (327)
T ss_pred CCCCCccCCHHHHHHHHHHHhc--CCcEEEEeCCCChHHHHHHHHHHHH----------CCCeEEEEecCCCChhhcCCC
Confidence 45553 66777778877763 6789999999999999999999986 345555544322211 1111
Q ss_pred H---------HHH-HHHHHHHHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhc-ccCC-----C
Q 003038 281 V---------EQR-VEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLV-CGIG-----E 343 (854)
Q Consensus 281 ~---------E~r-l~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll-~~~~-----g 343 (854)
. ... ....+-.+.. .|++|++||+..+ ..-... =+.+.|...-+ -+.. .
T Consensus 110 ~~~~l~~g~~~~~f~~GpL~~A~~---~g~illlDEin~a~p~~~~~-----------L~~lLE~~~~l~i~~~~~~i~~ 175 (327)
T TIGR01650 110 DAIVLKDGKQITEFRDGILPWALQ---HNVALCFDEYDAGRPDVMFV-----------IQRVLEAGGKLTLLDQNRVIRA 175 (327)
T ss_pred ceeeccCCcceeEEecCcchhHHh---CCeEEEechhhccCHHHHHH-----------HHHHhccCCeEEECCCceEecC
Confidence 0 000 1112333333 4789999999888 221100 01122211111 0000 1
Q ss_pred CceEEEEEecCHHH-------HHHhhccCCchhhhhccC-CCCCCCchHHHHh
Q 003038 344 NARFWLMGIATFQS-------YMRCKSGHPSLETLWSLH-PLTIPAGSLSLSL 388 (854)
Q Consensus 344 ~g~l~lIgatT~~e-------y~k~~~~~pale~~~~~~-~v~i~~~sl~~al 388 (854)
...|++|+++++.+ |.=...-+.|+-.+|.+- .+.-+++..+..+
T Consensus 176 hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~I 228 (327)
T TIGR01650 176 HPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAI 228 (327)
T ss_pred CCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHH
Confidence 12599999999866 777777888998844432 4666666555544
No 270
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.85 E-value=3.4e-05 Score=86.07 Aligned_cols=80 Identities=9% Similarity=0.004 Sum_probs=50.9
Q ss_pred cHHHHHHHHHHhhc-----cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHH
Q 003038 211 RNEDVMYVIENLMS-----KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRV 285 (854)
Q Consensus 211 r~~ei~~v~~~L~r-----~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl 285 (854)
+++++.++...+.. ...++++|+||||+|||++++.+|..+. ..++..+...+. ..+ .+
T Consensus 30 ~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~----------~~~~~~~~~~~~--~~~----~l 93 (328)
T PRK00080 30 QEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG----------VNIRITSGPALE--KPG----DL 93 (328)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhC----------CCeEEEeccccc--ChH----HH
Confidence 77777776665542 2345799999999999999999998752 233332222111 112 22
Q ss_pred HHHHHHHHhhhCCCeEEEeCccccc
Q 003038 286 EEIKNLVRSCLGRGIVLNLGDLEWA 310 (854)
Q Consensus 286 ~~l~~~~~~~~~~~~ILfidel~~l 310 (854)
..++.. . +.+.||||||+|.+
T Consensus 94 ~~~l~~---l-~~~~vl~IDEi~~l 114 (328)
T PRK00080 94 AAILTN---L-EEGDVLFIDEIHRL 114 (328)
T ss_pred HHHHHh---c-ccCCEEEEecHhhc
Confidence 233332 2 35779999999999
No 271
>PRK05642 DNA replication initiation factor; Validated
Probab=97.85 E-value=8.7e-05 Score=78.82 Aligned_cols=78 Identities=6% Similarity=0.112 Sum_probs=54.8
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEE
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFL 737 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~Vil 737 (854)
..++|+||+|+|||.|+++++..+.......+.+++.++. . +...+.+.++. ..+++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~-------~--------------~~~~~~~~~~~--~d~Li 102 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELL-------D--------------RGPELLDNLEQ--YELVC 102 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHH-------h--------------hhHHHHHhhhh--CCEEE
Confidence 4689999999999999999998776555667777766554 1 01123344443 36999
Q ss_pred EecCCCCC--HHHHHHHHHhhhc
Q 003038 738 IEDVEQAD--YCSQKGFKRAIES 758 (854)
Q Consensus 738 iDEieka~--~~v~~~Ll~~le~ 758 (854)
||||+... +..+..|+..+..
T Consensus 103 iDDi~~~~~~~~~~~~Lf~l~n~ 125 (234)
T PRK05642 103 LDDLDVIAGKADWEEALFHLFNR 125 (234)
T ss_pred EechhhhcCChHHHHHHHHHHHH
Confidence 99998663 5666778887753
No 272
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.85 E-value=2.4e-05 Score=89.25 Aligned_cols=73 Identities=11% Similarity=0.129 Sum_probs=53.8
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccccccc-ccchHH-HHHHHHHHHHH----HHhhhCCC
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFR-HMNRVE-VEQRVEEIKNL----VRSCLGRG 299 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~-~~~rge-~E~rl~~l~~~----~~~~~~~~ 299 (854)
.+.|++|+||||||||.+|+.||..+ +..++.++...+. ++|.|+ .+.-+..++.. +... .+
T Consensus 115 ~~~~iLL~GP~GsGKT~lAraLA~~l----------~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a--~~ 182 (413)
T TIGR00382 115 SKSNILLIGPTGSGKTLLAQTLARIL----------NVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKA--QK 182 (413)
T ss_pred CCceEEEECCCCcCHHHHHHHHHHhc----------CCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhc--cc
Confidence 46799999999999999999999764 3466777776664 368776 56666665543 2222 45
Q ss_pred eEEEeCccccc
Q 003038 300 IVLNLGDLEWA 310 (854)
Q Consensus 300 ~ILfidel~~l 310 (854)
.|||||||+.+
T Consensus 183 gIV~lDEIdkl 193 (413)
T TIGR00382 183 GIIYIDEIDKI 193 (413)
T ss_pred ceEEecccchh
Confidence 68999999988
No 273
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=1.9e-05 Score=87.83 Aligned_cols=75 Identities=12% Similarity=0.120 Sum_probs=59.7
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccc-cccchHH-HHHHHHHHHHHHHhhh--CCCeE
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSF-RHMNRVE-VEQRVEEIKNLVRSCL--GRGIV 301 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l-~~~~rge-~E~rl~~l~~~~~~~~--~~~~I 301 (854)
.|.|++|+||+|+|||-+++-||+-+ ++.|.--|...| +|||.|| +|-=+..|+..+.-.. ...=|
T Consensus 225 eKSNvLllGPtGsGKTllaqTLAr~l----------dVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGI 294 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLLAQTLARVL----------DVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGI 294 (564)
T ss_pred ecccEEEECCCCCchhHHHHHHHHHh----------CCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCe
Confidence 79999999999999999999999653 566777777777 6799987 8888888887754221 12348
Q ss_pred EEeCccccc
Q 003038 302 LNLGDLEWA 310 (854)
Q Consensus 302 Lfidel~~l 310 (854)
+||||++-+
T Consensus 295 VflDEvDKi 303 (564)
T KOG0745|consen 295 VFLDEVDKI 303 (564)
T ss_pred EEEehhhhh
Confidence 999999988
No 274
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.82 E-value=4.8e-05 Score=91.35 Aligned_cols=53 Identities=21% Similarity=0.162 Sum_probs=43.3
Q ss_pred HHHhhcCcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCC
Q 003038 612 LCNALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGS 684 (854)
Q Consensus 612 L~~~L~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~ 684 (854)
+.+.|...|+||++++..+..++... ..++|+||+|+|||++|++||+.+...
T Consensus 12 ~~~~~~~~viG~~~a~~~l~~a~~~~--------------------~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 12 VPERLIDQVIGQEEAVEIIKKAAKQK--------------------RNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred cchhhHhhccCHHHHHHHHHHHHHcC--------------------CCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 34467789999999999888877641 167899999999999999999988644
No 275
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00011 Score=87.43 Aligned_cols=120 Identities=13% Similarity=0.006 Sum_probs=70.5
Q ss_pred cHHHHHHHHHHhhccCcCCc-eeecCCCCCHHHHHHHHHHHHHcCCCCc--------------ccCCceEEEcccccccc
Q 003038 211 RNEDVMYVIENLMSKRKRNF-VVVGECLASIEGVVRGVIDKIEKGDVPE--------------ALRDVKCLPLSISSFRH 275 (854)
Q Consensus 211 r~~ei~~v~~~L~r~~k~n~-vLvGe~GvGKta~v~~la~~i~~~~vp~--------------~L~~~~~~~l~~~~l~~ 275 (854)
.+.-++.+...+.+.+-.+. +|+||+|||||++++.+|..+....-+. .-....|+.++.++-.
T Consensus 20 Qe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~~- 98 (702)
T PRK14960 20 QNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRT- 98 (702)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccccC-
Confidence 44455556666665554444 9999999999999999999886422110 0122345666554221
Q ss_pred cchHHHHHHHHHHHHHHHhhh--CCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEe
Q 003038 276 MNRVEVEQRVEEIKNLVRSCL--GRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGI 352 (854)
Q Consensus 276 ~~rge~E~rl~~l~~~~~~~~--~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIga 352 (854)
.. ..++++++.+.... ++.-|++|||+|++ .. +...+-++|..-.+ .+.+|.+
T Consensus 99 -~V----ddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~-----------------A~NALLKtLEEPP~--~v~FILa 154 (702)
T PRK14960 99 -KV----EDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH-----------------SFNALLKTLEEPPE--HVKFLFA 154 (702)
T ss_pred -CH----HHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH-----------------HHHHHHHHHhcCCC--CcEEEEE
Confidence 11 23455555554221 45679999999999 43 22234455521122 4788888
Q ss_pred cCH
Q 003038 353 ATF 355 (854)
Q Consensus 353 tT~ 355 (854)
||.
T Consensus 155 Ttd 157 (702)
T PRK14960 155 TTD 157 (702)
T ss_pred ECC
Confidence 875
No 276
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.80 E-value=8.7e-05 Score=76.71 Aligned_cols=130 Identities=13% Similarity=0.090 Sum_probs=88.9
Q ss_pred HHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccccccccc-----chHHHH---------H
Q 003038 218 VIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHM-----NRVEVE---------Q 283 (854)
Q Consensus 218 v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~-----~rge~E---------~ 283 (854)
++..|.-+..-|.+++|||+||||++.+.+|+-+..|-- .+..+++.-+|-.+=+++ ..=++- -
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~--~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cp 205 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGIN--QFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCP 205 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhcccc--ccCCceEEEEeccchhhccccCCchhhhhhhhhhcccch
Confidence 677888889999999999999999999999998887732 455667777776554443 111222 3
Q ss_pred HHHHHHHHHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhccc-CCCCceEEEEEecCHHHHHHh
Q 003038 284 RVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG-IGENARFWLMGIATFQSYMRC 361 (854)
Q Consensus 284 rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~g~g~l~lIgatT~~ey~k~ 361 (854)
+-..++..+++. .|-|+.+|||-+- ++ -.++.. ..| +.+|+++.=.....
T Consensus 206 k~~gmmmaIrsm--~PEViIvDEIGt~~d~----------------------~A~~ta~~~G---Vkli~TaHG~~ied- 257 (308)
T COG3854 206 KAEGMMMAIRSM--SPEVIIVDEIGTEEDA----------------------LAILTALHAG---VKLITTAHGNGIED- 257 (308)
T ss_pred HHHHHHHHHHhc--CCcEEEEeccccHHHH----------------------HHHHHHHhcC---cEEEEeeccccHHH-
Confidence 344567778876 5778999999554 32 222211 345 99999875333222
Q ss_pred hccCCchhhhhccCCC
Q 003038 362 KSGHPSLETLWSLHPL 377 (854)
Q Consensus 362 ~~~~pale~~~~~~~v 377 (854)
+.+.|+|.++|..|.+
T Consensus 258 l~krp~lkdlv~i~af 273 (308)
T COG3854 258 LIKRPTLKDLVEIQAF 273 (308)
T ss_pred hhcChhHHHHHhhhHH
Confidence 3578999997765544
No 277
>PRK08181 transposase; Validated
Probab=97.80 E-value=3.9e-05 Score=83.04 Aligned_cols=86 Identities=8% Similarity=0.120 Sum_probs=56.3
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEE
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLI 738 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~Vili 738 (854)
.++|+||+|+|||.||.+|+..+......++.+.+.++. +..... .....+ +.+.+.+. ...+++|
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~-------~~l~~a----~~~~~~-~~~l~~l~--~~dLLII 173 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLV-------QKLQVA----RRELQL-ESAIAKLD--KFDLLIL 173 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHH-------HHHHHH----HhCCcH-HHHHHHHh--cCCEEEE
Confidence 699999999999999999999887655566666665444 111100 000122 12333333 3469999
Q ss_pred ecCCCCC--HHHHHHHHHhhhc
Q 003038 739 EDVEQAD--YCSQKGFKRAIES 758 (854)
Q Consensus 739 DEieka~--~~v~~~Ll~~le~ 758 (854)
||+.... +..+..|.++|+.
T Consensus 174 DDlg~~~~~~~~~~~Lf~lin~ 195 (269)
T PRK08181 174 DDLAYVTKDQAETSVLFELISA 195 (269)
T ss_pred eccccccCCHHHHHHHHHHHHH
Confidence 9998764 4566789999974
No 278
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.79 E-value=7.6e-05 Score=79.15 Aligned_cols=136 Identities=15% Similarity=0.247 Sum_probs=96.0
Q ss_pred hhhhhhhHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHH
Q 003038 599 HKFKELNSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELA 678 (854)
Q Consensus 599 ~~~~~~~~e~l~~L~~~L~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA 678 (854)
.+|.+.-.+.|.-|..-+..+=+.-...|++|-..-.+.| ..+|+.||+|.||+.+|+.+-
T Consensus 169 srfa~ere~tl~~lksgiatrnp~fnrmieqierva~rsr-------------------~p~ll~gptgagksflarriy 229 (531)
T COG4650 169 SRFAEEREQTLDFLKSGIATRNPHFNRMIEQIERVAIRSR-------------------APILLNGPTGAGKSFLARRIY 229 (531)
T ss_pred HHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHhhcc-------------------CCeEeecCCCcchhHHHHHHH
Confidence 7787776777888888887776666666666655544433 257999999999999999653
Q ss_pred -----HHHhCCCCceEEEccccccCcCCCccccccccccCCC-CC-C-chHHHHHHHHHcCCCEEEEEecCCCCCHHHHH
Q 003038 679 -----RLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDE-QS-C-SYIERFAEAVSNNPHRVFLIEDVEQADYCSQK 750 (854)
Q Consensus 679 -----~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~-~g-~-g~~e~L~eav~~~p~~ViliDEieka~~~v~~ 750 (854)
+.-| ..+||.+||.... .+..++-+.+. .| + |..+.-...+|.....++|+|||..+..+-|.
T Consensus 230 elk~arhq~--sg~fvevncatlr-------gd~amsalfghvkgaftga~~~r~gllrsadggmlfldeigelgadeqa 300 (531)
T COG4650 230 ELKQARHQF--SGAFVEVNCATLR-------GDTAMSALFGHVKGAFTGARESREGLLRSADGGMLFLDEIGELGADEQA 300 (531)
T ss_pred HHHHHHHhc--CCceEEEeeeeec-------CchHHHHHHhhhccccccchhhhhhhhccCCCceEehHhhhhcCccHHH
Confidence 4444 3579999998665 33333333311 01 1 33333445567777899999999999999999
Q ss_pred HHHHhhhcCeEe
Q 003038 751 GFKRAIESGRIV 762 (854)
Q Consensus 751 ~Ll~~le~G~l~ 762 (854)
.|+++||+-++-
T Consensus 301 mllkaieekrf~ 312 (531)
T COG4650 301 MLLKAIEEKRFY 312 (531)
T ss_pred HHHHHHHhhccC
Confidence 999999987765
No 279
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=97.78 E-value=0.00018 Score=80.82 Aligned_cols=149 Identities=14% Similarity=0.048 Sum_probs=89.5
Q ss_pred HHhhcCcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEc
Q 003038 613 CNALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIA 692 (854)
Q Consensus 613 ~~~L~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id 692 (854)
.+.+.+-++||+.....| ..+.. +| ..+-.|+.|+.|+|||+++|+||.+|- . .-+.++
T Consensus 12 ~~~pf~aivGqd~lk~aL----~l~av---~P-----------~iggvLI~G~kGtaKSt~~Rala~LLp-~--~~~V~g 70 (423)
T COG1239 12 ENLPFTAIVGQDPLKLAL----GLNAV---DP-----------QIGGALIAGEKGTAKSTLARALADLLP-E--IEVVIG 70 (423)
T ss_pred hccchhhhcCchHHHHHH----hhhhc---cc-----------ccceeEEecCCCccHHHHHHHHHHhCC-c--cceecC
Confidence 346678899999665543 33321 22 256788999999999999999999992 1 112223
Q ss_pred cccccCcCCC--cc-----------ccccccc---cCC-CCCCchHH------HHHHHHH------------cCCCEEEE
Q 003038 693 LSSFSSTRAD--ST-----------EDSRNKR---SRD-EQSCSYIE------RFAEAVS------------NNPHRVFL 737 (854)
Q Consensus 693 ~s~~~~~~~~--s~-----------e~~~~~r---l~~-~~g~g~~e------~L~eav~------------~~p~~Vil 737 (854)
|.-...+... .. .-+.-++ ++. |.+- -.+ .+..+++ +....|++
T Consensus 71 c~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~a-teDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlY 149 (423)
T COG1239 71 CPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGA-TEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILY 149 (423)
T ss_pred CCCCCCCCChhhhhHHHHhhccccccccccceecceecCCCcc-chhhhccccCHHHHHhcCccccCCcchhhccCCEEE
Confidence 3211110000 00 0000011 111 2111 111 1233333 33457999
Q ss_pred EecCCCCCHHHHHHHHHhhhcC-eEecCCCceeec-CCeEEEEecCCC
Q 003038 738 IEDVEQADYCSQKGFKRAIESG-RIVTSSGDEVSL-GDAIVILSCESF 783 (854)
Q Consensus 738 iDEieka~~~v~~~Ll~~le~G-~l~d~~G~~v~~-~~aIiIlTsn~f 783 (854)
||||.-++..+++.||.++++| ...--.|..+.. -+.++|.|.|.-
T Consensus 150 vDEvnlL~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPE 197 (423)
T COG1239 150 VDEVNLLDDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPE 197 (423)
T ss_pred EeccccccHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCcc
Confidence 9999999999999999999999 334456766665 488999999953
No 280
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.78 E-value=4.3e-05 Score=88.49 Aligned_cols=127 Identities=9% Similarity=0.041 Sum_probs=74.4
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHH-HHHHHHHHHHhhhCCCeEEEeC
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQ-RVEEIKNLVRSCLGRGIVLNLG 305 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~-rl~~l~~~~~~~~~~~~ILfid 305 (854)
.|..+|+||||+|||.++++++..+... +.+++.++...|...+...+.. .+..+....+ ...+|+||
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~-------~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~----~~dvLiID 209 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRES-------GGKILYVRSELFTEHLVSAIRSGEMQRFRQFYR----NVDALFIE 209 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHc-------CCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcc----cCCEEEEc
Confidence 3567899999999999999999988652 4677777766554432222221 1111111222 34589999
Q ss_pred ccccc-cccccccccccccchhhhHHHHHHHhhccc--CCCCceEEEEEec-CHHHHHHhhccCCchhhhhcc---CCCC
Q 003038 306 DLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG--IGENARFWLMGIA-TFQSYMRCKSGHPSLETLWSL---HPLT 378 (854)
Q Consensus 306 el~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~--~~g~g~l~lIgat-T~~ey~k~~~~~pale~~~~~---~~v~ 378 (854)
|+|.+ +.... ..++-.++.. ..| ...+|+++ .+.++.. .++.|.+ || ..+.
T Consensus 210 Diq~l~~k~~~---------------qeelf~l~N~l~~~~--k~IIlts~~~p~~l~~---l~~rL~S--R~~~Gl~~~ 267 (445)
T PRK12422 210 DIEVFSGKGAT---------------QEEFFHTFNSLHTEG--KLIVISSTCAPQDLKA---MEERLIS--RFEWGIAIP 267 (445)
T ss_pred chhhhcCChhh---------------HHHHHHHHHHHHHCC--CcEEEecCCCHHHHhh---hHHHHHh--hhcCCeEEe
Confidence 99999 64321 1122233211 123 34455444 4666653 4778877 77 4666
Q ss_pred CCCchHHH
Q 003038 379 IPAGSLSL 386 (854)
Q Consensus 379 i~~~sl~~ 386 (854)
|..++.+.
T Consensus 268 l~~pd~e~ 275 (445)
T PRK12422 268 LHPLTKEG 275 (445)
T ss_pred cCCCCHHH
Confidence 76666544
No 281
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.77 E-value=0.00024 Score=81.10 Aligned_cols=125 Identities=15% Similarity=0.140 Sum_probs=76.3
Q ss_pred CCceeecCCCCCHHHHHHHHHHHHHcCCC---Cc------------ccCCceEEEcccccccccchHHHHHHHHHHHHHH
Q 003038 228 RNFVVVGECLASIEGVVRGVIDKIEKGDV---PE------------ALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLV 292 (854)
Q Consensus 228 ~n~vLvGe~GvGKta~v~~la~~i~~~~v---p~------------~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~ 292 (854)
...+|+||||+|||++++.+|+.+...+. |- .--+.+++.-+... ...++ ++++++.+
T Consensus 37 ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~~~---i~i~~----iR~l~~~~ 109 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEGLS---IGVDE----VRELVTIA 109 (394)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEecccccc---CCHHH----HHHHHHHH
Confidence 45889999999999999999998876431 10 00112222222110 12222 55676666
Q ss_pred Hhhh--CCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhc-ccCCCCceEEEEEecCHHHHHHhhccCCch
Q 003038 293 RSCL--GRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLV-CGIGENARFWLMGIATFQSYMRCKSGHPSL 368 (854)
Q Consensus 293 ~~~~--~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll-~~~~g~g~l~lIgatT~~ey~k~~~~~pal 368 (854)
.... ++.-|+||||+|.+ ... ...+-+.| .|..+ .+++++|+++.. ..|++
T Consensus 110 ~~~p~~~~~kViiIDead~m~~~a-----------------anaLLk~LEep~~~--~~fIL~a~~~~~------llpTI 164 (394)
T PRK07940 110 ARRPSTGRWRIVVIEDADRLTERA-----------------ANALLKAVEEPPPR--TVWLLCAPSPED------VLPTI 164 (394)
T ss_pred HhCcccCCcEEEEEechhhcCHHH-----------------HHHHHHHhhcCCCC--CeEEEEECChHH------ChHHH
Confidence 5421 44569999999999 431 12344445 23222 588888888543 45888
Q ss_pred hhhhccCCCCCCCchHHH
Q 003038 369 ETLWSLHPLTIPAGSLSL 386 (854)
Q Consensus 369 e~~~~~~~v~i~~~sl~~ 386 (854)
.+ |.+.+.++.++.+.
T Consensus 165 rS--Rc~~i~f~~~~~~~ 180 (394)
T PRK07940 165 RS--RCRHVALRTPSVEA 180 (394)
T ss_pred Hh--hCeEEECCCCCHHH
Confidence 87 77888888776554
No 282
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.77 E-value=4.4e-05 Score=84.92 Aligned_cols=90 Identities=17% Similarity=0.221 Sum_probs=60.6
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEE
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFL 737 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~Vil 737 (854)
.+++|+||+|+|||.||.++|..+......++.+.+.++. ......+. ... ...+...+.+.+ ..+++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~-------~~l~~~~~--~~~-~~~~~~~~~l~~--~DLLI 251 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELI-------EILREIRF--NND-KELEEVYDLLIN--CDLLI 251 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHH-------HHHHHHHh--ccc-hhHHHHHHHhcc--CCEEE
Confidence 5799999999999999999999998777777887776554 11110000 000 000112344443 36999
Q ss_pred EecC--CCCCHHHHHHHHHhhhcC
Q 003038 738 IEDV--EQADYCSQKGFKRAIESG 759 (854)
Q Consensus 738 iDEi--eka~~~v~~~Ll~~le~G 759 (854)
|||+ +..++..+..|..+|+.-
T Consensus 252 IDDlG~e~~t~~~~~~Lf~iin~R 275 (329)
T PRK06835 252 IDDLGTEKITEFSKSELFNLINKR 275 (329)
T ss_pred EeccCCCCCCHHHHHHHHHHHHHH
Confidence 9999 666788888899988753
No 283
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.77 E-value=5.7e-05 Score=89.52 Aligned_cols=62 Identities=10% Similarity=0.156 Sum_probs=43.3
Q ss_pred cHHHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccccc
Q 003038 211 RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISS 272 (854)
Q Consensus 211 r~~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~ 272 (854)
.++.++.+...+......+++|+||||||||++|+.+.....+...-..-.+..|+.+|...
T Consensus 70 qs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~ 131 (531)
T TIGR02902 70 QEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATT 131 (531)
T ss_pred cHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEcccc
Confidence 55667777776776677899999999999999999997653322110111246788888753
No 284
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.00018 Score=87.91 Aligned_cols=118 Identities=14% Similarity=0.027 Sum_probs=67.8
Q ss_pred HHHHHHHhhccCcCCc-eeecCCCCCHHHHHHHHHHHHHcCCC----Ccc----------cCCceEEEcccccccccchH
Q 003038 215 VMYVIENLMSKRKRNF-VVVGECLASIEGVVRGVIDKIEKGDV----PEA----------LRDVKCLPLSISSFRHMNRV 279 (854)
Q Consensus 215 i~~v~~~L~r~~k~n~-vLvGe~GvGKta~v~~la~~i~~~~v----p~~----------L~~~~~~~l~~~~l~~~~rg 279 (854)
++.+...+..++-.+. ||+||||||||++++.+|..+..... |-. ....-++.++..+-. ...
T Consensus 25 v~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~--kVD 102 (944)
T PRK14949 25 LHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRT--KVD 102 (944)
T ss_pred HHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEecccccc--CHH
Confidence 3444455555555665 89999999999999999999865321 110 111223334332110 111
Q ss_pred HHHHHHHHHHHHHHhhh--CCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhc-ccCCCCceEEEEEecCH
Q 003038 280 EVEQRVEEIKNLVRSCL--GRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLV-CGIGENARFWLMGIATF 355 (854)
Q Consensus 280 e~E~rl~~l~~~~~~~~--~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll-~~~~g~g~l~lIgatT~ 355 (854)
.++++++.+.... ++.-|++|||+|.+ .. +...+-+.| .| .+ .+++|++||.
T Consensus 103 ----dIReLie~v~~~P~~gk~KViIIDEAh~LT~e-----------------AqNALLKtLEEP-P~--~vrFILaTTe 158 (944)
T PRK14949 103 ----DTRELLDNVQYRPSRGRFKVYLIDEVHMLSRS-----------------SFNALLKTLEEP-PE--HVKFLLATTD 158 (944)
T ss_pred ----HHHHHHHHHHhhhhcCCcEEEEEechHhcCHH-----------------HHHHHHHHHhcc-CC--CeEEEEECCC
Confidence 2344555544221 45679999999999 33 122344444 22 23 4889999886
Q ss_pred HHH
Q 003038 356 QSY 358 (854)
Q Consensus 356 ~ey 358 (854)
...
T Consensus 159 ~~k 161 (944)
T PRK14949 159 PQK 161 (944)
T ss_pred chh
Confidence 553
No 285
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.76 E-value=9.1e-05 Score=79.03 Aligned_cols=89 Identities=10% Similarity=0.206 Sum_probs=57.7
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEE
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFL 737 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~Vil 737 (854)
.+++|+|++|+|||.||.+||..+......++.+++.++. .... ......... .+.+.+.+. ...|++
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~-------~~l~--~~~~~~~~~-~~~~l~~l~--~~dlLv 167 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIM-------SAMK--DTFSNSETS-EEQLLNDLS--NVDLLV 167 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHH-------HHHH--HHHhhcccc-HHHHHHHhc--cCCEEE
Confidence 3799999999999999999999987666777777766554 1110 000000001 123444444 367999
Q ss_pred EecCCCCC--HHHHHHHHHhhhc
Q 003038 738 IEDVEQAD--YCSQKGFKRAIES 758 (854)
Q Consensus 738 iDEieka~--~~v~~~Ll~~le~ 758 (854)
|||+.... ......|.++|+.
T Consensus 168 IDDig~~~~s~~~~~~l~~Ii~~ 190 (244)
T PRK07952 168 IDEIGVQTESRYEKVIINQIVDR 190 (244)
T ss_pred EeCCCCCCCCHHHHHHHHHHHHH
Confidence 99997754 3345577888875
No 286
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.75 E-value=3.6e-05 Score=89.61 Aligned_cols=128 Identities=13% Similarity=0.088 Sum_probs=77.6
Q ss_pred CCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHH-HHHHHHHHHHhhhCCCeEEEeCc
Q 003038 228 RNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQ-RVEEIKNLVRSCLGRGIVLNLGD 306 (854)
Q Consensus 228 ~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~-rl~~l~~~~~~~~~~~~ILfide 306 (854)
|+++|+||||+|||.++++++..+.+.. .+..++.++...|...+...+.. .+.++.+..++ ..+|+|||
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~-----~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~----~dlLiiDD 219 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKN-----PNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRS----VDVLLIDD 219 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhC-----CCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHhc----CCEEEEeh
Confidence 5578899999999999999999886532 15678888777665543333321 22334444442 45899999
Q ss_pred cccc-cccccccccccccchhhhHHHHHHHhhccc--CCCCceEEEEEecC-HHHHHHhhccCCchhhhhccC---CCCC
Q 003038 307 LEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG--IGENARFWLMGIAT-FQSYMRCKSGHPSLETLWSLH---PLTI 379 (854)
Q Consensus 307 l~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~--~~g~g~l~lIgatT-~~ey~k~~~~~pale~~~~~~---~v~i 379 (854)
||.+ +... ...++-.++-. ..+ ...+|+++. +.+... .+|.|.+ ||. .|.|
T Consensus 220 i~~l~~~~~---------------~~~~l~~~~n~l~~~~--~~iiits~~~p~~l~~---l~~~l~S--Rl~~gl~v~i 277 (450)
T PRK00149 220 IQFLAGKER---------------TQEEFFHTFNALHEAG--KQIVLTSDRPPKELPG---LEERLRS--RFEWGLTVDI 277 (450)
T ss_pred hhhhcCCHH---------------HHHHHHHHHHHHHHCC--CcEEEECCCCHHHHHH---HHHHHHh--HhcCCeeEEe
Confidence 9999 6432 11233344321 223 345665554 344332 3577877 773 5667
Q ss_pred CCchHHH
Q 003038 380 PAGSLSL 386 (854)
Q Consensus 380 ~~~sl~~ 386 (854)
..|+.+.
T Consensus 278 ~~pd~~~ 284 (450)
T PRK00149 278 EPPDLET 284 (450)
T ss_pred cCCCHHH
Confidence 7776554
No 287
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.74 E-value=0.00016 Score=72.93 Aligned_cols=79 Identities=11% Similarity=0.139 Sum_probs=49.6
Q ss_pred HHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHH----------
Q 003038 216 MYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRV---------- 285 (854)
Q Consensus 216 ~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl---------- 285 (854)
.+.+.-++ ....+++|+||+|+||+.+|+.+-..-.+ ++..|+.++++.+-. ..+|..|
T Consensus 12 ~~~~~~~a-~~~~pVlI~GE~GtGK~~lA~~IH~~s~r-------~~~pfi~vnc~~~~~---~~~e~~LFG~~~~~~~~ 80 (168)
T PF00158_consen 12 REQAKRAA-SSDLPVLITGETGTGKELLARAIHNNSPR-------KNGPFISVNCAALPE---ELLESELFGHEKGAFTG 80 (168)
T ss_dssp HHHHHHHT-TSTS-EEEECSTTSSHHHHHHHHHHCSTT-------TTS-EEEEETTTS-H---HHHHHHHHEBCSSSSTT
T ss_pred HHHHHHHh-CCCCCEEEEcCCCCcHHHHHHHHHHhhhc-------ccCCeEEEehhhhhc---chhhhhhhccccccccc
Confidence 33333344 36689999999999999999988764222 456899999987632 1122111
Q ss_pred -----HHHHHHHHhhhCCCeEEEeCccccc
Q 003038 286 -----EEIKNLVRSCLGRGIVLNLGDLEWA 310 (854)
Q Consensus 286 -----~~l~~~~~~~~~~~~ILfidel~~l 310 (854)
..+++.+. +=+||||||..|
T Consensus 81 ~~~~~~G~l~~A~-----~GtL~Ld~I~~L 105 (168)
T PF00158_consen 81 ARSDKKGLLEQAN-----GGTLFLDEIEDL 105 (168)
T ss_dssp TSSEBEHHHHHTT-----TSEEEEETGGGS
T ss_pred cccccCCceeecc-----ceEEeecchhhh
Confidence 12333332 337999999999
No 288
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=9.7e-05 Score=83.41 Aligned_cols=137 Identities=11% Similarity=0.101 Sum_probs=90.2
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCc--eEEEcccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNN--FVSIALSS 695 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~--~i~id~s~ 695 (854)
.++++-++-+..++..+.-.-.|. +| ..++++||||+|||.+++.+.+.+...... .++|||-.
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~-------------~p-~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~ 82 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGE-------------RP-SNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLE 82 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCC-------------CC-ccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeee
Confidence 457888888888888876654432 23 358999999999999999999999865322 69999998
Q ss_pred ccCcCCCccccccccc-c------CCCCCCchH---HHHHHHHHc-CCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecC
Q 003038 696 FSSTRADSTEDSRNKR-S------RDEQSCSYI---ERFAEAVSN-NPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTS 764 (854)
Q Consensus 696 ~~~~~~~s~e~~~~~r-l------~~~~g~g~~---e~L~eav~~-~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~ 764 (854)
+.+ ...+.. + ++..|.... +.|.+.+.+ ...-||++||+|.+-..-++.|+..+.-..--
T Consensus 83 ~~t-------~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~-- 153 (366)
T COG1474 83 LRT-------PYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN-- 153 (366)
T ss_pred CCC-------HHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--
Confidence 873 222111 1 112233222 366777765 56679999999998766545555555421110
Q ss_pred CCceeecCCeEEEEecCCC
Q 003038 765 SGDEVSLGDAIVILSCESF 783 (854)
Q Consensus 765 ~G~~v~~~~aIiIlTsn~f 783 (854)
-.+.++|+.+|..
T Consensus 154 ------~~~v~vi~i~n~~ 166 (366)
T COG1474 154 ------KVKVSIIAVSNDD 166 (366)
T ss_pred ------ceeEEEEEEeccH
Confidence 3456788888864
No 289
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.73 E-value=7.4e-05 Score=89.67 Aligned_cols=53 Identities=21% Similarity=0.186 Sum_probs=43.0
Q ss_pred HHHhhcCcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCC
Q 003038 612 LCNALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGS 684 (854)
Q Consensus 612 L~~~L~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~ 684 (854)
+...+...|+||++++..|..++... ..++|+||+|+|||++|++|++.++..
T Consensus 25 ~~~~~~~~vigq~~a~~~L~~~~~~~--------------------~~~l~~G~~G~GKttla~~l~~~l~~~ 77 (637)
T PRK13765 25 VPERLIDQVIGQEHAVEVIKKAAKQR--------------------RHVMMIGSPGTGKSMLAKAMAELLPKE 77 (637)
T ss_pred cCcccHHHcCChHHHHHHHHHHHHhC--------------------CeEEEECCCCCcHHHHHHHHHHHcChH
Confidence 33456678999999999888877641 158999999999999999999988643
No 290
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=5.9e-05 Score=82.92 Aligned_cols=69 Identities=19% Similarity=0.346 Sum_probs=50.6
Q ss_pred cceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHH----HcC
Q 003038 656 EETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAV----SNN 731 (854)
Q Consensus 656 p~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav----~~~ 731 (854)
|.--+|++||+|+|||.+|+++|+.. ..+||.+.|+..+ ++. ||-.+.|..++ .+-
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akea---ga~fInv~~s~lt-------~KW----------fgE~eKlv~AvFslAsKl 185 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEA---GANFINVSVSNLT-------SKW----------FGEAQKLVKAVFSLASKL 185 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHc---CCCcceeeccccc-------hhh----------HHHHHHHHHHHHhhhhhc
Confidence 33456778999999999999999976 5789999999777 221 14444455554 333
Q ss_pred CCEEEEEecCCCC
Q 003038 732 PHRVFLIEDVEQA 744 (854)
Q Consensus 732 p~~ViliDEieka 744 (854)
..+||||||||.+
T Consensus 186 ~P~iIFIDEvds~ 198 (386)
T KOG0737|consen 186 QPSIIFIDEVDSF 198 (386)
T ss_pred CcceeehhhHHHH
Confidence 4589999999965
No 291
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.72 E-value=9.2e-05 Score=77.56 Aligned_cols=79 Identities=14% Similarity=0.121 Sum_probs=53.4
Q ss_pred HHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHH
Q 003038 213 EDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLV 292 (854)
Q Consensus 213 ~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~ 292 (854)
.-+.++-..+.-+..++++|+||||||||++++.++...... +..++.+++..+.. +..+++..+
T Consensus 24 ~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~-------~~~~~~i~~~~~~~--------~~~~~~~~~ 88 (226)
T TIGR03420 24 ELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER-------GKSAIYLPLAELAQ--------ADPEVLEGL 88 (226)
T ss_pred HHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc-------CCcEEEEeHHHHHH--------hHHHHHhhc
Confidence 334444444444577889999999999999999999876432 34566676665542 223444444
Q ss_pred HhhhCCCeEEEeCccccc
Q 003038 293 RSCLGRGIVLNLGDLEWA 310 (854)
Q Consensus 293 ~~~~~~~~ILfidel~~l 310 (854)
.. .-+|||||++++
T Consensus 89 ~~----~~lLvIDdi~~l 102 (226)
T TIGR03420 89 EQ----ADLVCLDDVEAI 102 (226)
T ss_pred cc----CCEEEEeChhhh
Confidence 32 348999999999
No 292
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=4.4e-05 Score=82.21 Aligned_cols=106 Identities=14% Similarity=0.225 Sum_probs=64.1
Q ss_pred eEEEecCCCchHHHHHHHHHHHHh----CC--CCceEEEccccccCcCCCccccccccccCCCCCC---chHHHHHHHHH
Q 003038 659 WLFFQGVDADAKEKIAKELARLVF----GS--HNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSC---SYIERFAEAVS 729 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lf----g~--~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~---g~~e~L~eav~ 729 (854)
.+|++||||+|||.|+|+||+.|- +. +..+|.|+.... .++..+..|. -.-+++.|.+.
T Consensus 179 liLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsL------------FSKWFsESgKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 179 LILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSL------------FSKWFSESGKLVAKMFQKIQELVE 246 (423)
T ss_pred EEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHH------------HHHHHhhhhhHHHHHHHHHHHHHh
Confidence 589999999999999999999872 11 122333332211 1111122222 01124556555
Q ss_pred cCCCE-EEEEecCCCCC---------------HHHHHHHHHhhhcCeEecCCCceeecCCeEEEEecCCCCC
Q 003038 730 NNPHR-VFLIEDVEQAD---------------YCSQKGFKRAIESGRIVTSSGDEVSLGDAIVILSCESFSS 785 (854)
Q Consensus 730 ~~p~~-ViliDEieka~---------------~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn~f~~ 785 (854)
....= .|+|||||.+. -.|-|+||.-||. --...|.+|..|||--++
T Consensus 247 d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDr---------lK~~~NvliL~TSNl~~s 309 (423)
T KOG0744|consen 247 DRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDR---------LKRYPNVLILATSNLTDS 309 (423)
T ss_pred CCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHH---------hccCCCEEEEeccchHHH
Confidence 53333 47899999642 1478899988884 224578888889996444
No 293
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.71 E-value=0.0001 Score=68.47 Aligned_cols=96 Identities=19% Similarity=0.289 Sum_probs=60.2
Q ss_pred EEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccc-cccCCCCCC-chHHHHHHHHHcCCCEEEE
Q 003038 660 LFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRN-KRSRDEQSC-SYIERFAEAVSNNPHRVFL 737 (854)
Q Consensus 660 lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~-~rl~~~~g~-g~~e~L~eav~~~p~~Vil 737 (854)
+.|+||+|+|||.+|+.||+.+..... .. ....+ .+.....-+ || ..+.|++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~---------~~-------~~~~vy~~~~~~~~w~gY----------~~q~vvi 54 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIG---------EP-------TKDSVYTRNPGDKFWDGY----------QGQPVVI 54 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhc---------cC-------CCCcEEeCCCccchhhcc----------CCCcEEE
Confidence 368999999999999999998853210 00 00000 000000001 44 1357999
Q ss_pred EecCCCCCHH----HHHHHHHhhhcCeEecC----CCceeecCCeEEEEecC
Q 003038 738 IEDVEQADYC----SQKGFKRAIESGRIVTS----SGDEVSLGDAIVILSCE 781 (854)
Q Consensus 738 iDEieka~~~----v~~~Ll~~le~G~l~d~----~G~~v~~~~aIiIlTsn 781 (854)
+||+...... ....|+++++...+.-. ......|.--+||+|||
T Consensus 55 ~DD~~~~~~~~~~~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s~~vi~tsN 106 (107)
T PF00910_consen 55 IDDFGQDNDGYNYSDESELIRLISSNPFQPNMADLEDKGTPFNSKLVIITSN 106 (107)
T ss_pred EeecCccccccchHHHHHHHHHHhcCCcccccccHhhCCCccCCCEEEEcCC
Confidence 9999998854 67888999988766531 11225566678888888
No 294
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.00026 Score=84.10 Aligned_cols=92 Identities=15% Similarity=0.110 Sum_probs=55.6
Q ss_pred HHHHHHHHHhhccCcCCc-eeecCCCCCHHHHHHHHHHHHHcCC------C---Cc----------ccCCceEEEccccc
Q 003038 213 EDVMYVIENLMSKRKRNF-VVVGECLASIEGVVRGVIDKIEKGD------V---PE----------ALRDVKCLPLSISS 272 (854)
Q Consensus 213 ~ei~~v~~~L~r~~k~n~-vLvGe~GvGKta~v~~la~~i~~~~------v---p~----------~L~~~~~~~l~~~~ 272 (854)
.-++.+...+...+-.+. ||+|++|+|||++++.||+.+.... + |- .-....++.++.++
T Consensus 23 ~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas 102 (700)
T PRK12323 23 HVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAAS 102 (700)
T ss_pred HHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEecccc
Confidence 334455556665555565 8999999999999999999986521 0 10 00112455555442
Q ss_pred ccccchHHHHHHHHHHHHHHHhhh--CCCeEEEeCccccc
Q 003038 273 FRHMNRVEVEQRVEEIKNLVRSCL--GRGIVLNLGDLEWA 310 (854)
Q Consensus 273 l~~~~rge~E~rl~~l~~~~~~~~--~~~~ILfidel~~l 310 (854)
-. ... .++++++.+.... ++.-|++|||+|.+
T Consensus 103 ~~--gVD----dIReLie~~~~~P~~gr~KViIIDEah~L 136 (700)
T PRK12323 103 NR--GVD----EMAQLLDKAVYAPTAGRFKVYMIDEVHML 136 (700)
T ss_pred cC--CHH----HHHHHHHHHHhchhcCCceEEEEEChHhc
Confidence 11 222 2444555543211 45679999999999
No 295
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.70 E-value=0.00011 Score=90.55 Aligned_cols=138 Identities=7% Similarity=0.002 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhhc------cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccc---------c
Q 003038 212 NEDVMYVIENLMS------KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRH---------M 276 (854)
Q Consensus 212 ~~ei~~v~~~L~r------~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~---------~ 276 (854)
++--++|++.|.- .+...++|+||||+|||++++.+|..+ +..++.++++.+.. .
T Consensus 328 ~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l----------~~~~~~i~~~~~~d~~~i~g~~~~ 397 (784)
T PRK10787 328 ERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT----------GRKYVRMALGGVRDEAEIRGHRRT 397 (784)
T ss_pred HHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEEcCCCCCHHHhccchhc
Confidence 3334445555542 134568999999999999999999764 33566666554321 1
Q ss_pred chHHHHHHHHHHHHHHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhccc---------------
Q 003038 277 NRVEVEQRVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG--------------- 340 (854)
Q Consensus 277 ~rge~E~rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~--------------- 340 (854)
|.|....++...+..+.. .+.|+||||++.+ ....+. ....+-.++.+
T Consensus 398 ~~g~~~G~~~~~l~~~~~---~~~villDEidk~~~~~~g~-------------~~~aLlevld~~~~~~~~d~~~~~~~ 461 (784)
T PRK10787 398 YIGSMPGKLIQKMAKVGV---KNPLFLLDEIDKMSSDMRGD-------------PASALLEVLDPEQNVAFSDHYLEVDY 461 (784)
T ss_pred cCCCCCcHHHHHHHhcCC---CCCEEEEEChhhcccccCCC-------------HHHHHHHHhccccEEEEecccccccc
Confidence 455555555444444332 2347899999999 432211 11122233322
Q ss_pred CCCCceEEEEEecCHHHHHHhhccCCchhhhhccCCCCCCCchHH
Q 003038 341 IGENARFWLMGIATFQSYMRCKSGHPSLETLWSLHPLTIPAGSLS 385 (854)
Q Consensus 341 ~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~~~v~i~~~sl~ 385 (854)
..+ .+.+|++|++ +...|+|-. |+..|++...+..
T Consensus 462 dls--~v~~i~TaN~------~~i~~aLl~--R~~ii~~~~~t~e 496 (784)
T PRK10787 462 DLS--DVMFVATSNS------MNIPAPLLD--RMEVIRLSGYTED 496 (784)
T ss_pred cCC--ceEEEEcCCC------CCCCHHHhc--ceeeeecCCCCHH
Confidence 123 5888886643 247999999 8888888766543
No 296
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.00014 Score=85.76 Aligned_cols=147 Identities=16% Similarity=0.136 Sum_probs=91.7
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..|-|.+++..++.+.|--.+..-++.. -+. .=|.| .|+.||||+|||.|||++|-.- +-+|.++..|+|.
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~----lGa-kiPkG-vlLvGpPGTGKTLLAkAvAgEA---~VPFf~iSGS~FV 220 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQA----LGA-KIPKG-VLLVGPPGTGKTLLAKAVAGEA---GVPFFSISGSDFV 220 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHh----ccc-ccccc-eeEecCCCCCcHHHHHHHhccc---CCCceeccchhhh
Confidence 4579999999999999876543211100 000 02334 4678999999999999999765 5678888888776
Q ss_pred CcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEecCCCCCH--------------HHHHHHHHhhhcCeEec
Q 003038 698 STRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQADY--------------CSQKGFKRAIESGRIVT 763 (854)
Q Consensus 698 ~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliDEieka~~--------------~v~~~Ll~~le~G~l~d 763 (854)
+-+- +-|......|++.-+++-.|||||||||.... +..|-||.-||-
T Consensus 221 -------emfV------GvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDG----- 282 (596)
T COG0465 221 -------EMFV------GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDG----- 282 (596)
T ss_pred -------hhhc------CCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhcc-----
Confidence 3221 22223333566666666669999999997532 356666666651
Q ss_pred CCCceeecCCeEEEEecCCCCCCCCCCCCCcc
Q 003038 764 SSGDEVSLGDAIVILSCESFSSRSRACSPPTK 795 (854)
Q Consensus 764 ~~G~~v~~~~aIiIlTsn~f~~~s~~~sp~~~ 795 (854)
.| .=...|+|-.||--|..-++.-.|-|
T Consensus 283 -F~---~~~gviviaaTNRpdVlD~ALlRpgR 310 (596)
T COG0465 283 -FG---GNEGVIVIAATNRPDVLDPALLRPGR 310 (596)
T ss_pred -CC---CCCceEEEecCCCcccchHhhcCCCC
Confidence 11 00234555566655666666665644
No 297
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.69 E-value=0.00012 Score=87.77 Aligned_cols=50 Identities=12% Similarity=0.130 Sum_probs=39.6
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHH
Q 003038 619 KVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
.|+||++.+..|...+.....+. ++...++|.||+|+|||++++.||+.+
T Consensus 85 el~~~~~ki~~l~~~l~~~~~~~-------------~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 85 ELAVHKKKIEEVETWLKAQVLEN-------------APKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HhcCcHHHHHHHHHHHHhccccc-------------CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999888876543221 233368999999999999999999876
No 298
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.68 E-value=8.4e-05 Score=85.34 Aligned_cols=86 Identities=19% Similarity=0.283 Sum_probs=56.3
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCC--CCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEE
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGS--HNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRV 735 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~--~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~V 735 (854)
.+++|+||+|+|||.|+++++..+... ...++++++.+|. .... ..+.. +-.+.+.+.++. ..|
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~-------~~~~-~~~~~----~~~~~~~~~~~~--~dl 202 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFT-------NDFV-NALRN----NKMEEFKEKYRS--VDL 202 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHH-------HHHH-HHHHc----CCHHHHHHHHHh--CCE
Confidence 478999999999999999999988654 4567788776554 1110 00000 111234444443 579
Q ss_pred EEEecCCCCCH--HHHHHHHHhhh
Q 003038 736 FLIEDVEQADY--CSQKGFKRAIE 757 (854)
Q Consensus 736 iliDEieka~~--~v~~~Ll~~le 757 (854)
++||||+.... ..|..|+..|+
T Consensus 203 LiiDDi~~l~~~~~~~~~l~~~~n 226 (405)
T TIGR00362 203 LLIDDIQFLAGKERTQEEFFHTFN 226 (405)
T ss_pred EEEehhhhhcCCHHHHHHHHHHHH
Confidence 99999997643 46677777775
No 299
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.68 E-value=3e-05 Score=78.93 Aligned_cols=87 Identities=14% Similarity=0.187 Sum_probs=57.9
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEE
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFL 737 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~Vil 737 (854)
.+++|+||+|+|||.||.+++..+.........++++++. +..... . ..+-.+.+...+.+. .+++
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~-------~~l~~~--~---~~~~~~~~~~~l~~~--dlLi 113 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLL-------DELKQS--R---SDGSYEELLKRLKRV--DLLI 113 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHH-------HHHHCC--H---CCTTHCHHHHHHHTS--SCEE
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCcee-------cccccc--c---cccchhhhcCccccc--cEec
Confidence 3799999999999999999999887777777777777554 221111 0 111112344555543 5999
Q ss_pred EecCCCC--CHHHHHHHHHhhhc
Q 003038 738 IEDVEQA--DYCSQKGFKRAIES 758 (854)
Q Consensus 738 iDEieka--~~~v~~~Ll~~le~ 758 (854)
|||+-.. +....+.|.++|+.
T Consensus 114 lDDlG~~~~~~~~~~~l~~ii~~ 136 (178)
T PF01695_consen 114 LDDLGYEPLSEWEAELLFEIIDE 136 (178)
T ss_dssp EETCTSS---HHHHHCTHHHHHH
T ss_pred ccccceeeecccccccchhhhhH
Confidence 9999865 46677888888875
No 300
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.68 E-value=0.00013 Score=80.47 Aligned_cols=102 Identities=15% Similarity=0.147 Sum_probs=61.5
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEE
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFL 737 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~Vil 737 (854)
..++|+||+|+|||.||.+||..+.........+.++++. ... +..+.. + .+ +.+.+.+.+ ..|++
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~-------~~l--k~~~~~-~-~~-~~~l~~l~~--~dlLi 222 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFI-------REL--KNSISD-G-SV-KEKIDAVKE--APVLM 222 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHH-------HHH--HHHHhc-C-cH-HHHHHHhcC--CCEEE
Confidence 3689999999999999999999987555556666666544 111 111100 0 12 223344444 45999
Q ss_pred EecCC--CCCHHHHHHHHHhhhcCeEecCCCceeecCCeEEEEecCC
Q 003038 738 IEDVE--QADYCSQKGFKRAIESGRIVTSSGDEVSLGDAIVILSCES 782 (854)
Q Consensus 738 iDEie--ka~~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn~ 782 (854)
|||+. .+++-+.+.++..|-+.|+. .+--.|+|||.
T Consensus 223 IDDiG~e~~s~~~~~~ll~~Il~~R~~---------~~~~ti~TSNl 260 (306)
T PRK08939 223 LDDIGAEQMSSWVRDEVLGVILQYRMQ---------EELPTFFTSNF 260 (306)
T ss_pred EecCCCccccHHHHHHHHHHHHHHHHH---------CCCeEEEECCC
Confidence 99996 45566665566555332321 11226888984
No 301
>PRK04195 replication factor C large subunit; Provisional
Probab=97.67 E-value=0.0002 Score=84.20 Aligned_cols=85 Identities=13% Similarity=0.122 Sum_probs=57.2
Q ss_pred cHHHHHHHHHHhhccC----cCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHH
Q 003038 211 RNEDVMYVIENLMSKR----KRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVE 286 (854)
Q Consensus 211 r~~ei~~v~~~L~r~~----k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~ 286 (854)
.++.+.++.+.+.+.. .++++|+||||+|||++|+.||+.+ +..++.++.+.... .. .+.
T Consensus 19 ~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el----------~~~~ielnasd~r~--~~----~i~ 82 (482)
T PRK04195 19 NEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY----------GWEVIELNASDQRT--AD----VIE 82 (482)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc----------CCCEEEEccccccc--HH----HHH
Confidence 5666667666665432 6789999999999999999999875 45677777664432 11 223
Q ss_pred HHHHHHHhhh---C-CCeEEEeCccccc-c
Q 003038 287 EIKNLVRSCL---G-RGIVLNLGDLEWA-E 311 (854)
Q Consensus 287 ~l~~~~~~~~---~-~~~ILfidel~~l-~ 311 (854)
.++..+.... + .+.||+|||++.+ +
T Consensus 83 ~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~ 112 (482)
T PRK04195 83 RVAGEAATSGSLFGARRKLILLDEVDGIHG 112 (482)
T ss_pred HHHHHhhccCcccCCCCeEEEEecCccccc
Confidence 3333332211 2 4679999999999 5
No 302
>PLN03025 replication factor C subunit; Provisional
Probab=97.64 E-value=0.00028 Score=78.42 Aligned_cols=93 Identities=15% Similarity=0.100 Sum_probs=54.7
Q ss_pred cHHH-HHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHH
Q 003038 211 RNED-VMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIK 289 (854)
Q Consensus 211 r~~e-i~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~ 289 (854)
..++ +.++-.++..++..|.+|+||||+|||++++++|..+..... ...++.++.+... ....+.+.++...
T Consensus 17 g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~-----~~~~~eln~sd~~--~~~~vr~~i~~~~ 89 (319)
T PLN03025 17 GNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNY-----KEAVLELNASDDR--GIDVVRNKIKMFA 89 (319)
T ss_pred CcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccC-----ccceeeecccccc--cHHHHHHHHHHHH
Confidence 3344 444444555556678999999999999999999988753211 1235555554322 2223333333321
Q ss_pred HHHHhh-hCCCeEEEeCccccc
Q 003038 290 NLVRSC-LGRGIVLNLGDLEWA 310 (854)
Q Consensus 290 ~~~~~~-~~~~~ILfidel~~l 310 (854)
...... .++.-|++|||+|.+
T Consensus 90 ~~~~~~~~~~~kviiiDE~d~l 111 (319)
T PLN03025 90 QKKVTLPPGRHKIVILDEADSM 111 (319)
T ss_pred hccccCCCCCeEEEEEechhhc
Confidence 111000 023579999999999
No 303
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.64 E-value=0.00016 Score=81.86 Aligned_cols=143 Identities=10% Similarity=0.042 Sum_probs=77.7
Q ss_pred cHHH-HHHHHHHhhccCcCCc-eeecCCCCCHHHHHHHHHHHHHcCCCC--c-c---------cC--CceEEEccccccc
Q 003038 211 RNED-VMYVIENLMSKRKRNF-VVVGECLASIEGVVRGVIDKIEKGDVP--E-A---------LR--DVKCLPLSISSFR 274 (854)
Q Consensus 211 r~~e-i~~v~~~L~r~~k~n~-vLvGe~GvGKta~v~~la~~i~~~~vp--~-~---------L~--~~~~~~l~~~~l~ 274 (854)
..+. ++.+...+..++-.+. +|+||||+|||++++.+|..+.....+ . . .. ...++.++.++
T Consensus 20 Gq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~-- 97 (363)
T PRK14961 20 GQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAAS-- 97 (363)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccc--
Confidence 3344 4445555555454554 899999999999999999987532111 0 0 00 12344443321
Q ss_pred ccchHHHHHHHHHHHHHHHhhh--CCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEE
Q 003038 275 HMNRVEVEQRVEEIKNLVRSCL--GRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMG 351 (854)
Q Consensus 275 ~~~rge~E~rl~~l~~~~~~~~--~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIg 351 (854)
+.-+ ..++++++.+.... ++.-|++|||+|.+ ... ...+-..+....+ .+++|.
T Consensus 98 ---~~~v-~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a-----------------~naLLk~lEe~~~--~~~fIl 154 (363)
T PRK14961 98 ---RTKV-EEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHS-----------------FNALLKTLEEPPQ--HIKFIL 154 (363)
T ss_pred ---cCCH-HHHHHHHHHHhcCcccCCceEEEEEChhhcCHHH-----------------HHHHHHHHhcCCC--CeEEEE
Confidence 1111 12455655554321 33569999999999 421 1123333321122 477888
Q ss_pred ecCHHHHHHhhccCCchhhhhccCCCCCCCchHH
Q 003038 352 IATFQSYMRCKSGHPSLETLWSLHPLTIPAGSLS 385 (854)
Q Consensus 352 atT~~ey~k~~~~~pale~~~~~~~v~i~~~sl~ 385 (854)
+||... + -.+++.. |.+.+.++..+..
T Consensus 155 ~t~~~~--~---l~~tI~S--Rc~~~~~~~l~~~ 181 (363)
T PRK14961 155 ATTDVE--K---IPKTILS--RCLQFKLKIISEE 181 (363)
T ss_pred EcCChH--h---hhHHHHh--hceEEeCCCCCHH
Confidence 776422 2 3456665 6667777665533
No 304
>PRK06921 hypothetical protein; Provisional
Probab=97.64 E-value=8.7e-05 Score=80.36 Aligned_cols=86 Identities=12% Similarity=0.114 Sum_probs=53.4
Q ss_pred ceeEEEecCCCchHHHHHHHHHHHHhCC-CCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEE
Q 003038 657 ETWLFFQGVDADAKEKIAKELARLVFGS-HNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRV 735 (854)
Q Consensus 657 ~~~lLf~Gp~GvGKt~lAr~LA~~lfg~-~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~V 735 (854)
..+++|+||+|+|||.||.++|..+... ...++.+...+.. .. +.. .++..+...+.+. ...|
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~-------~~-----l~~--~~~~~~~~~~~~~--~~dl 180 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGF-------GD-----LKD--DFDLLEAKLNRMK--KVEV 180 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHH-------HH-----HHH--HHHHHHHHHHHhc--CCCE
Confidence 3589999999999999999999988654 4455555543322 10 000 0011112223333 3569
Q ss_pred EEEecCCC-------CCHHHHHHHHHhhhc
Q 003038 736 FLIEDVEQ-------ADYCSQKGFKRAIES 758 (854)
Q Consensus 736 iliDEiek-------a~~~v~~~Ll~~le~ 758 (854)
++|||++. ++...+..|..+|+.
T Consensus 181 LiIDDl~~~~~g~e~~t~~~~~~lf~iin~ 210 (266)
T PRK06921 181 LFIDDLFKPVNGKPRATEWQIEQMYSVLNY 210 (266)
T ss_pred EEEeccccccCCCccCCHHHHHHHHHHHHH
Confidence 99999943 555566778888864
No 305
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.64 E-value=7e-05 Score=80.49 Aligned_cols=100 Identities=10% Similarity=0.107 Sum_probs=65.8
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCC-chHHHHHHHHHcCCCEEE
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSC-SYIERFAEAVSNNPHRVF 736 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~-g~~e~L~eav~~~p~~Vi 736 (854)
..++|+||+|||||.||-+|+..+.....+++.+...++. .++.....+ ...++|...+. ...|+
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~------------~~Lk~~~~~~~~~~~l~~~l~--~~dlL 171 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLL------------SKLKAAFDEGRLEEKLLRELK--KVDLL 171 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHH------------HHHHHHHhcCchHHHHHHHhh--cCCEE
Confidence 3789999999999999999999887545666666665544 111111111 12224444443 45699
Q ss_pred EEecCCC--CCHHHHHHHHHhhhcCeEecCCCceeecCCeEEEEecCC
Q 003038 737 LIEDVEQ--ADYCSQKGFKRAIESGRIVTSSGDEVSLGDAIVILSCES 782 (854)
Q Consensus 737 liDEiek--a~~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn~ 782 (854)
+|||+-. .++...+.|.++|..-+.. ... |+|||.
T Consensus 172 IiDDlG~~~~~~~~~~~~~q~I~~r~~~----------~~~-~~tsN~ 208 (254)
T COG1484 172 IIDDIGYEPFSQEEADLLFQLISRRYES----------RSL-IITSNL 208 (254)
T ss_pred EEecccCccCCHHHHHHHHHHHHHHHhh----------ccc-eeecCC
Confidence 9999987 5666788888988753322 223 888884
No 306
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.64 E-value=0.00031 Score=73.82 Aligned_cols=102 Identities=13% Similarity=0.148 Sum_probs=69.5
Q ss_pred ceeEEEecCCC-chHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccC--C--CCCCchHH--HHHHHHH
Q 003038 657 ETWLFFQGVDA-DAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSR--D--EQSCSYIE--RFAEAVS 729 (854)
Q Consensus 657 ~~~lLf~Gp~G-vGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~--~--~~g~g~~e--~L~eav~ 729 (854)
...+||.|..+ .||..++.-+++.+|... ++...+. +-+.+..-. . +...+.++ .+.+.+.
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~-----i~~~~HP-------D~~~I~pe~~~~~~~~~I~IdqIReL~~~l~ 82 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNS-----IPLENNP-------DYHFIARETSATSNAKNISIEQIRKLQDFLS 82 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccC-----cccCCCC-------CEEEEeccccccccCCcccHHHHHHHHHHHh
Confidence 46899999998 999999999999998642 2333222 111111000 0 00114444 4566665
Q ss_pred cC----CCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeecCCeEEEEecC
Q 003038 730 NN----PHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDAIVILSCE 781 (854)
Q Consensus 730 ~~----p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn 781 (854)
.. +++|++|+++|+++....|+||+.+|+. -.+++|||+|+
T Consensus 83 ~~p~~g~~KViII~~ae~mt~~AANALLKtLEEP-----------P~~t~fILit~ 127 (263)
T PRK06581 83 KTSAISGYKVAIIYSAELMNLNAANSCLKILEDA-----------PKNSYIFLITS 127 (263)
T ss_pred hCcccCCcEEEEEechHHhCHHHHHHHHHhhcCC-----------CCCeEEEEEeC
Confidence 44 5789999999999999999999999973 35788888774
No 307
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.61 E-value=0.00025 Score=83.54 Aligned_cols=102 Identities=18% Similarity=0.251 Sum_probs=69.0
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHc--------
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSN-------- 730 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~-------- 730 (854)
.+|++||+|-|||+||+.+|+.- .-.++.||.|.-- +. ..+.+++..++..
T Consensus 328 ilLL~GppGlGKTTLAHViAkqa---GYsVvEINASDeR----------t~--------~~v~~kI~~avq~~s~l~ads 386 (877)
T KOG1969|consen 328 ILLLCGPPGLGKTTLAHVIAKQA---GYSVVEINASDER----------TA--------PMVKEKIENAVQNHSVLDADS 386 (877)
T ss_pred eEEeecCCCCChhHHHHHHHHhc---CceEEEecccccc----------cH--------HHHHHHHHHHHhhccccccCC
Confidence 79999999999999999999975 4577888877321 11 1233455555543
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHhhhc-C-eEecCCC---------ceeecCCeEEEEecCCC
Q 003038 731 NPHRVFLIEDVEQADYCSQKGFKRAIES-G-RIVTSSG---------DEVSLGDAIVILSCESF 783 (854)
Q Consensus 731 ~p~~ViliDEieka~~~v~~~Ll~~le~-G-~l~d~~G---------~~v~~~~aIiIlTsn~f 783 (854)
+|.| +++||||=+++...+.|+..+.. + ..+...+ +.--+.+.||-. ||..
T Consensus 387 rP~C-LViDEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICI-CNdL 448 (877)
T KOG1969|consen 387 RPVC-LVIDEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICI-CNDL 448 (877)
T ss_pred Ccce-EEEecccCCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEE-ecCc
Confidence 4544 56999999999999999998872 2 2222222 122366777666 6653
No 308
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.61 E-value=0.00017 Score=83.78 Aligned_cols=76 Identities=18% Similarity=0.209 Sum_probs=52.6
Q ss_pred CCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHH---HHHHHHHHHHhhhCCCeEEEe
Q 003038 228 RNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQ---RVEEIKNLVRSCLGRGIVLNL 304 (854)
Q Consensus 228 ~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~---rl~~l~~~~~~~~~~~~ILfi 304 (854)
|+++|+|++|+|||.++++++..+.... .+.+++.++...|...+...+.. .+.++.+..+ ...+|+|
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~-----~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~----~~dvLiI 212 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNF-----SDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEIC----QNDVLII 212 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhC-----CCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhc----cCCEEEE
Confidence 4566899999999999999999876532 35788888877776554433322 2333333333 3458999
Q ss_pred Cccccc-cc
Q 003038 305 GDLEWA-EF 312 (854)
Q Consensus 305 del~~l-~~ 312 (854)
||+|.+ +.
T Consensus 213 DDiq~l~~k 221 (450)
T PRK14087 213 DDVQFLSYK 221 (450)
T ss_pred eccccccCC
Confidence 999999 54
No 309
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.61 E-value=0.00039 Score=83.66 Aligned_cols=121 Identities=12% Similarity=0.003 Sum_probs=69.3
Q ss_pred cHHHHHHHHHHhhccCcCCc-eeecCCCCCHHHHHHHHHHHHHcCC----CCcc----------cCCceEEEcccccccc
Q 003038 211 RNEDVMYVIENLMSKRKRNF-VVVGECLASIEGVVRGVIDKIEKGD----VPEA----------LRDVKCLPLSISSFRH 275 (854)
Q Consensus 211 r~~ei~~v~~~L~r~~k~n~-vLvGe~GvGKta~v~~la~~i~~~~----vp~~----------L~~~~~~~l~~~~l~~ 275 (854)
.+.-++.+...+..++..+. ||+|++|||||++++.||+.+.... .|.. -....++.+|-.+-.
T Consensus 21 Qe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~r- 99 (830)
T PRK07003 21 QEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNR- 99 (830)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccccc-
Confidence 34445556666665555555 8999999999999999999886421 1100 011235555543211
Q ss_pred cchHHHHHHHHHHHHHHHhhh--CCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEe
Q 003038 276 MNRVEVEQRVEEIKNLVRSCL--GRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGI 352 (854)
Q Consensus 276 ~~rge~E~rl~~l~~~~~~~~--~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIga 352 (854)
...+ ++++++.+.... ++.-|++|||+|+| .. +...+-+.|..-.. .+.+|.+
T Consensus 100 -gVDd----IReLIe~a~~~P~~gr~KVIIIDEah~LT~~-----------------A~NALLKtLEEPP~--~v~FILa 155 (830)
T PRK07003 100 -GVDE----MAALLERAVYAPVDARFKVYMIDEVHMLTNH-----------------AFNAMLKTLEEPPP--HVKFILA 155 (830)
T ss_pred -cHHH----HHHHHHHHHhccccCCceEEEEeChhhCCHH-----------------HHHHHHHHHHhcCC--CeEEEEE
Confidence 1222 344555443211 34568999999999 42 12234444421122 4888888
Q ss_pred cCHH
Q 003038 353 ATFQ 356 (854)
Q Consensus 353 tT~~ 356 (854)
||..
T Consensus 156 Ttd~ 159 (830)
T PRK07003 156 TTDP 159 (830)
T ss_pred ECCh
Confidence 8853
No 310
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=97.60 E-value=0.0002 Score=79.35 Aligned_cols=65 Identities=20% Similarity=0.197 Sum_probs=49.1
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 619 KVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
-++||.+|-++..-.+...+.|-.. --.+||.||||+|||.+|-++|+.| |..-+|+.+..|+..
T Consensus 25 GlVGQ~~AReAagiiv~mIk~~K~a-------------Gr~iLiaGppGtGKTAlA~~ia~eL-G~~~PF~~isgSEiy 89 (398)
T PF06068_consen 25 GLVGQEKAREAAGIIVDMIKEGKIA-------------GRAILIAGPPGTGKTALAMAIAKEL-GEDVPFVSISGSEIY 89 (398)
T ss_dssp TEES-HHHHHHHHHHHHHHHTT--T-------------T-EEEEEE-TTSSHHHHHHHHHHHC-TTTS-EEEEEGGGG-
T ss_pred cccChHHHHHHHHHHHHHHhccccc-------------CcEEEEeCCCCCCchHHHHHHHHHh-CCCCCeeEcccceee
Confidence 4799999888777777666654211 1278999999999999999999999 889999999999765
No 311
>PRK08727 hypothetical protein; Validated
Probab=97.60 E-value=0.00041 Score=73.64 Aligned_cols=120 Identities=10% Similarity=0.053 Sum_probs=71.2
Q ss_pred cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEe
Q 003038 225 KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNL 304 (854)
Q Consensus 225 ~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfi 304 (854)
+..+.++|+|++|+|||.++.+++....+. +.+++-+++ .++..++.++++.+.+ ..+|+|
T Consensus 39 ~~~~~l~l~G~~G~GKThL~~a~~~~~~~~-------~~~~~y~~~--------~~~~~~~~~~~~~l~~----~dlLiI 99 (233)
T PRK08727 39 QSSDWLYLSGPAGTGKTHLALALCAAAEQA-------GRSSAYLPL--------QAAAGRLRDALEALEG----RSLVAL 99 (233)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCcEEEEeH--------HHhhhhHHHHHHHHhc----CCEEEE
Confidence 344568999999999999999998876542 334444433 2344556666666654 358999
Q ss_pred Cccccc-cccccccccccccchhhhHHHHHHHhhccc--CCCCceEEEEEecCHHHHHHhhccCCchhhhhcc---CCCC
Q 003038 305 GDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG--IGENARFWLMGIATFQSYMRCKSGHPSLETLWSL---HPLT 378 (854)
Q Consensus 305 del~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~--~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~---~~v~ 378 (854)
||++++ +.... ...+-+++.. ..+. .+.+.+-.-+.++.. .+|.|.+ || ..+.
T Consensus 100 DDi~~l~~~~~~---------------~~~lf~l~n~~~~~~~-~vI~ts~~~p~~l~~---~~~dL~S--Rl~~~~~~~ 158 (233)
T PRK08727 100 DGLESIAGQRED---------------EVALFDFHNRARAAGI-TLLYTARQMPDGLAL---VLPDLRS--RLAQCIRIG 158 (233)
T ss_pred eCcccccCChHH---------------HHHHHHHHHHHHHcCC-eEEEECCCChhhhhh---hhHHHHH--HHhcCceEE
Confidence 999999 54321 1122233311 1221 244444444666653 5788887 53 4456
Q ss_pred CCCchH
Q 003038 379 IPAGSL 384 (854)
Q Consensus 379 i~~~sl 384 (854)
++++..
T Consensus 159 l~~~~~ 164 (233)
T PRK08727 159 LPVLDD 164 (233)
T ss_pred ecCCCH
Confidence 665543
No 312
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00012 Score=85.93 Aligned_cols=90 Identities=8% Similarity=0.093 Sum_probs=67.9
Q ss_pred cHHHHHHHHHHhhccCcC------CceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccc-----c---
Q 003038 211 RNEDVMYVIENLMSKRKR------NFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRH-----M--- 276 (854)
Q Consensus 211 r~~ei~~v~~~L~r~~k~------n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~-----~--- 276 (854)
-++-=.||++-++=++=+ =..++||||||||+|++.+|+.+ |..|+.++++-+.. |
T Consensus 416 m~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL----------nRkFfRfSvGG~tDvAeIkGHRR 485 (906)
T KOG2004|consen 416 MEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL----------NRKFFRFSVGGMTDVAEIKGHRR 485 (906)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh----------CCceEEEeccccccHHhhcccce
Confidence 444456788877544222 25789999999999999999885 56899999886642 2
Q ss_pred -chHHHHHHHHHHHHHHHhhhCCCeEEEeCcccccccc
Q 003038 277 -NRVEVEQRVEEIKNLVRSCLGRGIVLNLGDLEWAEFR 313 (854)
Q Consensus 277 -~rge~E~rl~~l~~~~~~~~~~~~ILfidel~~l~~~ 313 (854)
|.|-.--|+-.-++.+.-. +-++.||||+-+|.|
T Consensus 486 TYVGAMPGkiIq~LK~v~t~---NPliLiDEvDKlG~g 520 (906)
T KOG2004|consen 486 TYVGAMPGKIIQCLKKVKTE---NPLILIDEVDKLGSG 520 (906)
T ss_pred eeeccCChHHHHHHHhhCCC---CceEEeehhhhhCCC
Confidence 8888888988888877754 445779999999543
No 313
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.59 E-value=0.00019 Score=78.43 Aligned_cols=66 Identities=21% Similarity=0.221 Sum_probs=51.7
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
.-++||.+|-++-.-.+...++|-.. -..+||.||+|+|||.||-.+|+.| |..-+|+.+..|+..
T Consensus 39 dG~VGQ~~AReAaGvIv~mik~gk~a-------------GrgiLi~GppgTGKTAlA~gIa~eL-G~dvPF~~isgsEiY 104 (450)
T COG1224 39 DGLVGQEEAREAAGVIVKMIKQGKMA-------------GRGILIVGPPGTGKTALAMGIAREL-GEDVPFVAISGSEIY 104 (450)
T ss_pred CcccchHHHHHhhhHHHHHHHhCccc-------------ccEEEEECCCCCcHHHHHHHHHHHh-CCCCCceeeccceee
Confidence 34699998876655555555554211 1268999999999999999999999 999999999999765
No 314
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.59 E-value=0.00053 Score=80.83 Aligned_cols=92 Identities=12% Similarity=0.006 Sum_probs=56.0
Q ss_pred HHHHHHHHHhhccCcCCc-eeecCCCCCHHHHHHHHHHHHHcCCCCcc--------------cCCceEEEcccccccccc
Q 003038 213 EDVMYVIENLMSKRKRNF-VVVGECLASIEGVVRGVIDKIEKGDVPEA--------------LRDVKCLPLSISSFRHMN 277 (854)
Q Consensus 213 ~ei~~v~~~L~r~~k~n~-vLvGe~GvGKta~v~~la~~i~~~~vp~~--------------L~~~~~~~l~~~~l~~~~ 277 (854)
.-++.+...+...+-.+. +|+||+|||||++++.+|..+.....+.. -....++.++.++-. .
T Consensus 23 ~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~--~ 100 (509)
T PRK14958 23 PVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRT--K 100 (509)
T ss_pred HHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccccC--C
Confidence 335556666666566664 89999999999999999998865321110 011235666543211 1
Q ss_pred hHHHHHHHHHHHHHHHhhh--CCCeEEEeCccccc
Q 003038 278 RVEVEQRVEEIKNLVRSCL--GRGIVLNLGDLEWA 310 (854)
Q Consensus 278 rge~E~rl~~l~~~~~~~~--~~~~ILfidel~~l 310 (854)
..+ ++++++.+.-.. ++.-|++|||+|.+
T Consensus 101 v~~----iR~l~~~~~~~p~~~~~kV~iIDE~~~l 131 (509)
T PRK14958 101 VED----TRELLDNIPYAPTKGRFKVYLIDEVHML 131 (509)
T ss_pred HHH----HHHHHHHHhhccccCCcEEEEEEChHhc
Confidence 222 445555544221 34568999999999
No 315
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.59 E-value=0.00011 Score=78.94 Aligned_cols=81 Identities=14% Similarity=0.210 Sum_probs=57.7
Q ss_pred HHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccc-----hHHHHHHHHHH
Q 003038 214 DVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMN-----RVEVEQRVEEI 288 (854)
Q Consensus 214 ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~-----rge~E~rl~~l 288 (854)
.+....+-+. +++|++|+|+||||||-++-+++.++.+ +|.+++-+....|+.-. .|..+.+|.
T Consensus 94 ~~~~~~~~~~--~~~nl~l~G~~G~GKThLa~Ai~~~l~~-------~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~-- 162 (254)
T COG1484 94 DLASLVEFFE--RGENLVLLGPPGVGKTHLAIAIGNELLK-------AGISVLFITAPDLLSKLKAAFDEGRLEEKLL-- 162 (254)
T ss_pred HHHHHHHHhc--cCCcEEEECCCCCcHHHHHHHHHHHHHH-------cCCeEEEEEHHHHHHHHHHHHhcCchHHHHH--
Confidence 3444443444 7999999999999999999999999874 36788888877776532 234455543
Q ss_pred HHHHHhhhCCCeEEEeCccccc
Q 003038 289 KNLVRSCLGRGIVLNLGDLEWA 310 (854)
Q Consensus 289 ~~~~~~~~~~~~ILfidel~~l 310 (854)
+.+++. -+|+||||-..
T Consensus 163 -~~l~~~----dlLIiDDlG~~ 179 (254)
T COG1484 163 -RELKKV----DLLIIDDIGYE 179 (254)
T ss_pred -HHhhcC----CEEEEecccCc
Confidence 334433 38999999776
No 316
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.57 E-value=0.00028 Score=74.21 Aligned_cols=86 Identities=17% Similarity=0.248 Sum_probs=57.7
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhC--CCCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEE
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFG--SHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVF 736 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg--~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~Vi 736 (854)
+++++||+|+|||.|..+++..+.. ....++++++.+|. .... .-+.. +..+.+.+.++ ...++
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~-------~~~~-~~~~~----~~~~~~~~~~~--~~DlL 101 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFI-------REFA-DALRD----GEIEEFKDRLR--SADLL 101 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHH-------HHHH-HHHHT----TSHHHHHHHHC--TSSEE
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHH-------HHHH-HHHHc----ccchhhhhhhh--cCCEE
Confidence 5789999999999999999988753 45678888887775 2111 00000 11123334333 57799
Q ss_pred EEecCCCCCH--HHHHHHHHhhhc
Q 003038 737 LIEDVEQADY--CSQKGFKRAIES 758 (854)
Q Consensus 737 liDEieka~~--~v~~~Ll~~le~ 758 (854)
+||+|+.... ..|..|...++.
T Consensus 102 ~iDDi~~l~~~~~~q~~lf~l~n~ 125 (219)
T PF00308_consen 102 IIDDIQFLAGKQRTQEELFHLFNR 125 (219)
T ss_dssp EEETGGGGTTHHHHHHHHHHHHHH
T ss_pred EEecchhhcCchHHHHHHHHHHHH
Confidence 9999998864 357888888764
No 317
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.00032 Score=84.81 Aligned_cols=110 Identities=15% Similarity=0.229 Sum_probs=80.9
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCC-------CCceEEE
Q 003038 619 KVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGS-------HNNFVSI 691 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~-------~~~~i~i 691 (854)
-|||-++-|..+...+.|.+. +.| +|.|++|||||.++.-||..+-.. ...++.+
T Consensus 171 PvIGRd~EI~r~iqIL~RR~K--------------NNP----vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL 232 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTK--------------NNP----VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL 232 (786)
T ss_pred CCcChHHHHHHHHHHHhccCC--------------CCC----eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe
Confidence 469999877777777665321 245 588999999999999999876432 3556677
Q ss_pred ccccccCcCCCccccccccccCCCCCC--chHHH---HHHHHHcCCCEEEEEecCCCC---------CHHHHHHHHHhhh
Q 003038 692 ALSSFSSTRADSTEDSRNKRSRDEQSC--SYIER---FAEAVSNNPHRVFLIEDVEQA---------DYCSQKGFKRAIE 757 (854)
Q Consensus 692 d~s~~~~~~~~s~e~~~~~rl~~~~g~--g~~e~---L~eav~~~p~~ViliDEieka---------~~~v~~~Ll~~le 757 (854)
||+... ++..| -|+++ +.+.+.+.+.-|+||||||.. .-+.-|.|+.++.
T Consensus 233 D~g~Lv----------------AGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA 296 (786)
T COG0542 233 DLGSLV----------------AGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA 296 (786)
T ss_pred cHHHHh----------------ccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh
Confidence 766433 34455 45554 556667788889999999963 2669999999999
Q ss_pred cCeEe
Q 003038 758 SGRIV 762 (854)
Q Consensus 758 ~G~l~ 762 (854)
.|.+.
T Consensus 297 RGeL~ 301 (786)
T COG0542 297 RGELR 301 (786)
T ss_pred cCCeE
Confidence 99988
No 318
>PRK09183 transposase/IS protein; Provisional
Probab=97.55 E-value=0.0002 Score=77.19 Aligned_cols=120 Identities=10% Similarity=0.039 Sum_probs=67.6
Q ss_pred cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccch-HHHHHHHHHHHHHHHhhhCCCeEEE
Q 003038 225 KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNR-VEVEQRVEEIKNLVRSCLGRGIVLN 303 (854)
Q Consensus 225 ~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~r-ge~E~rl~~l~~~~~~~~~~~~ILf 303 (854)
....|++|+||||+|||.++.+++..... +|..+.-++...+...+. ...+.++..++.... ..+.+|+
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~-------~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~---~~~dlLi 169 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVR-------AGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGV---MAPRLLI 169 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHH-------cCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHh---cCCCEEE
Confidence 35789999999999999999999876432 345565555555543321 112223444443322 2456999
Q ss_pred eCccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchh
Q 003038 304 LGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLE 369 (854)
Q Consensus 304 idel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale 369 (854)
|||++.. .... ....+-+++..--+++.+.+-+-.++.+|.+++..||.+.
T Consensus 170 iDdlg~~~~~~~---------------~~~~lf~li~~r~~~~s~iiTsn~~~~~w~~~~~~d~~~~ 221 (259)
T PRK09183 170 IDEIGYLPFSQE---------------EANLFFQVIAKRYEKGSMILTSNLPFGQWDQTFAGDAALT 221 (259)
T ss_pred EcccccCCCChH---------------HHHHHHHHHHHHHhcCcEEEecCCCHHHHHHHhcCchhHH
Confidence 9999776 2211 1223444442101122332222235788888776666553
No 319
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.55 E-value=0.00019 Score=77.18 Aligned_cols=122 Identities=12% Similarity=0.128 Sum_probs=79.5
Q ss_pred cHHHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccccccccc--chHHHHHHHHHH
Q 003038 211 RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHM--NRVEVEQRVEEI 288 (854)
Q Consensus 211 r~~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~--~rge~E~rl~~l 288 (854)
-+..+.-+...+.||.-.|.+++||||+|||+.+.++|+.+-. +.+.-.++.+++.+...+. .|+- -+.+..+
T Consensus 41 Qe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~----~~~~~~rvl~lnaSderGisvvr~K-ik~fakl 115 (346)
T KOG0989|consen 41 QEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC----EQLFPCRVLELNASDERGISVVREK-IKNFAKL 115 (346)
T ss_pred hHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC----ccccccchhhhcccccccccchhhh-hcCHHHH
Confidence 4566777777788888889999999999999999999988754 5677788888888766553 2221 1112222
Q ss_pred HHHHHhhh----CCCeEEEeCccccc--cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHH
Q 003038 289 KNLVRSCL----GRGIVLNLGDLEWA--EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQS 357 (854)
Q Consensus 289 ~~~~~~~~----~~~~ILfidel~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~e 357 (854)
........ +..=|+.|||.+.+ ++|+ .+.+.+..... ..++|-.|+|-+
T Consensus 116 ~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~------------------aLrr~mE~~s~--~trFiLIcnyls 170 (346)
T KOG0989|consen 116 TVLLKRSDGYPCPPFKIIILDECDSMTSDAQA------------------ALRRTMEDFSR--TTRFILICNYLS 170 (346)
T ss_pred hhccccccCCCCCcceEEEEechhhhhHHHHH------------------HHHHHHhcccc--ceEEEEEcCChh
Confidence 22221110 22268999999999 6664 24455532222 477777787655
No 320
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.53 E-value=0.00054 Score=82.28 Aligned_cols=119 Identities=15% Similarity=0.057 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhhccCcCCc-eeecCCCCCHHHHHHHHHHHHHcCCCC---ccc-----------CCceEEEccccccccc
Q 003038 212 NEDVMYVIENLMSKRKRNF-VVVGECLASIEGVVRGVIDKIEKGDVP---EAL-----------RDVKCLPLSISSFRHM 276 (854)
Q Consensus 212 ~~ei~~v~~~L~r~~k~n~-vLvGe~GvGKta~v~~la~~i~~~~vp---~~L-----------~~~~~~~l~~~~l~~~ 276 (854)
+.-++.+...+..++-.+. ||+||+|||||++++.+|..+...... ... ....++.++.++
T Consensus 22 e~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas---- 97 (647)
T PRK07994 22 EHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAAS---- 97 (647)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeecccc----
Confidence 3344555555655555554 899999999999999999988763211 000 111334444321
Q ss_pred chHHHHHHHHHHHHHHHhhh--CCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEec
Q 003038 277 NRVEVEQRVEEIKNLVRSCL--GRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIA 353 (854)
Q Consensus 277 ~rge~E~rl~~l~~~~~~~~--~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgat 353 (854)
+.-++ .++++++.+.... ++.-|++|||+|.+ .. +...+-+.|..-.+ .+.+|.+|
T Consensus 98 -~~~Vd-diR~li~~~~~~p~~g~~KV~IIDEah~Ls~~-----------------a~NALLKtLEEPp~--~v~FIL~T 156 (647)
T PRK07994 98 -RTKVE-DTRELLDNVQYAPARGRFKVYLIDEVHMLSRH-----------------SFNALLKTLEEPPE--HVKFLLAT 156 (647)
T ss_pred -cCCHH-HHHHHHHHHHhhhhcCCCEEEEEechHhCCHH-----------------HHHHHHHHHHcCCC--CeEEEEec
Confidence 11112 2455555554321 45679999999999 43 22234444421123 48888888
Q ss_pred CH
Q 003038 354 TF 355 (854)
Q Consensus 354 T~ 355 (854)
|.
T Consensus 157 t~ 158 (647)
T PRK07994 157 TD 158 (647)
T ss_pred CC
Confidence 75
No 321
>PRK08181 transposase; Validated
Probab=97.53 E-value=9.4e-05 Score=80.07 Aligned_cols=74 Identities=12% Similarity=0.082 Sum_probs=51.7
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccch-HHHHHHHHHHHHHHHhhhCCCeEEEe
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNR-VEVEQRVEEIKNLVRSCLGRGIVLNL 304 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~r-ge~E~rl~~l~~~~~~~~~~~~ILfi 304 (854)
.+.|++|+||||+|||.++.+++..+.+ +|..++-++...|....+ ...+..+.++++.+.+ .-+|+|
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~-------~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~----~dLLII 173 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIE-------NGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDK----FDLLIL 173 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHH-------cCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhc----CCEEEE
Confidence 6789999999999999999999987654 355666666666655321 1222334445555543 458999
Q ss_pred Cccccc
Q 003038 305 GDLEWA 310 (854)
Q Consensus 305 del~~l 310 (854)
||++.+
T Consensus 174 DDlg~~ 179 (269)
T PRK08181 174 DDLAYV 179 (269)
T ss_pred eccccc
Confidence 999877
No 322
>PRK06526 transposase; Provisional
Probab=97.53 E-value=0.00013 Score=78.38 Aligned_cols=74 Identities=12% Similarity=0.056 Sum_probs=46.5
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccch-HHHHHHHHHHHHHHHhhhCCCeEEEe
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNR-VEVEQRVEEIKNLVRSCLGRGIVLNL 304 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~r-ge~E~rl~~l~~~~~~~~~~~~ILfi 304 (854)
.+.|++|+||||||||.++.+++..+.+ +|.+++-.....+..... ......+...+..+. +..+|+|
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~-------~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~----~~dlLII 165 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQ-------AGHRVLFATAAQWVARLAAAHHAGRLQAELVKLG----RYPLLIV 165 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHH-------CCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhc----cCCEEEE
Confidence 6789999999999999999999988764 234444444444443211 111112222223222 3568999
Q ss_pred Cccccc
Q 003038 305 GDLEWA 310 (854)
Q Consensus 305 del~~l 310 (854)
||++.+
T Consensus 166 DD~g~~ 171 (254)
T PRK06526 166 DEVGYI 171 (254)
T ss_pred cccccC
Confidence 999887
No 323
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=9.6e-05 Score=87.14 Aligned_cols=82 Identities=11% Similarity=0.097 Sum_probs=60.8
Q ss_pred HHHHHHhhcc------CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccc-----c----chHH
Q 003038 216 MYVIENLMSK------RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRH-----M----NRVE 280 (854)
Q Consensus 216 ~~v~~~L~r~------~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~-----~----~rge 280 (854)
.||++-|+=+ +..=.+||||||||||++++.+|..+ |..|+.++++-+.. | |.|-
T Consensus 333 eRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al----------~RkfvR~sLGGvrDEAEIRGHRRTYIGa 402 (782)
T COG0466 333 ERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL----------GRKFVRISLGGVRDEAEIRGHRRTYIGA 402 (782)
T ss_pred HHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh----------CCCEEEEecCccccHHHhcccccccccc
Confidence 4566655432 11235789999999999999999886 56899998887653 2 7788
Q ss_pred HHHHHHHHHHHHHhhhCCCeEEEeCccccc
Q 003038 281 VEQRVEEIKNLVRSCLGRGIVLNLGDLEWA 310 (854)
Q Consensus 281 ~E~rl~~l~~~~~~~~~~~~ILfidel~~l 310 (854)
.--|+-.-+..+... +-+..+|||+-+
T Consensus 403 mPGrIiQ~mkka~~~---NPv~LLDEIDKm 429 (782)
T COG0466 403 MPGKIIQGMKKAGVK---NPVFLLDEIDKM 429 (782)
T ss_pred CChHHHHHHHHhCCc---CCeEEeechhhc
Confidence 888877766666653 456789999999
No 324
>PHA02244 ATPase-like protein
Probab=97.52 E-value=0.00025 Score=79.26 Aligned_cols=80 Identities=4% Similarity=0.086 Sum_probs=47.8
Q ss_pred HHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccc----cccc--cchHHHHHHHH
Q 003038 213 EDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSIS----SFRH--MNRVEVEQRVE 286 (854)
Q Consensus 213 ~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~----~l~~--~~rge~E~rl~ 286 (854)
...+++...+. ...+++|+||||||||++|+++|..+ +..++.++.- .+.. ...|.|+ -.
T Consensus 107 ~~~~ri~r~l~--~~~PVLL~GppGtGKTtLA~aLA~~l----------g~pfv~In~l~d~~~L~G~i~~~g~~~--dg 172 (383)
T PHA02244 107 YETADIAKIVN--ANIPVFLKGGAGSGKNHIAEQIAEAL----------DLDFYFMNAIMDEFELKGFIDANGKFH--ET 172 (383)
T ss_pred HHHHHHHHHHh--cCCCEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEecChHHHhhccccccccccc--ch
Confidence 34445555544 46789999999999999999999873 3345554411 1110 0112221 01
Q ss_pred HHHHHHHhhhCCCeEEEeCccccc
Q 003038 287 EIKNLVRSCLGRGIVLNLGDLEWA 310 (854)
Q Consensus 287 ~l~~~~~~~~~~~~ILfidel~~l 310 (854)
.++..++ .+-+|||||+..+
T Consensus 173 pLl~A~~----~GgvLiLDEId~a 192 (383)
T PHA02244 173 PFYEAFK----KGGLFFIDEIDAS 192 (383)
T ss_pred HHHHHhh----cCCEEEEeCcCcC
Confidence 2333333 3569999999877
No 325
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.51 E-value=0.00081 Score=78.47 Aligned_cols=94 Identities=7% Similarity=0.053 Sum_probs=59.4
Q ss_pred cHHHHHHHHH-HhhccCcC-CceeecCCCCCHHHHHHHHHHHHHcCCCCc--------------ccCCceEEEccccccc
Q 003038 211 RNEDVMYVIE-NLMSKRKR-NFVVVGECLASIEGVVRGVIDKIEKGDVPE--------------ALRDVKCLPLSISSFR 274 (854)
Q Consensus 211 r~~ei~~v~~-~L~r~~k~-n~vLvGe~GvGKta~v~~la~~i~~~~vp~--------------~L~~~~~~~l~~~~l~ 274 (854)
..+.+.+.+. .+..++-. ..+|+||+|+|||++++.+|+.+....-|. ......|+.+|.++-.
T Consensus 17 GQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~ 96 (491)
T PRK14964 17 GQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNT 96 (491)
T ss_pred CcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCC
Confidence 4455555554 44444333 589999999999999999999876433221 1234566777665322
Q ss_pred ccchHHHHHHHHHHHHHHHhhh--CCCeEEEeCccccc
Q 003038 275 HMNRVEVEQRVEEIKNLVRSCL--GRGIVLNLGDLEWA 310 (854)
Q Consensus 275 ~~~rge~E~rl~~l~~~~~~~~--~~~~ILfidel~~l 310 (854)
.. ..++++++.+.... +..-|++|||+|.+
T Consensus 97 --~v----ddIR~Iie~~~~~P~~~~~KVvIIDEah~L 128 (491)
T PRK14964 97 --SV----DDIKVILENSCYLPISSKFKVYIIDEVHML 128 (491)
T ss_pred --CH----HHHHHHHHHHHhccccCCceEEEEeChHhC
Confidence 12 23556666665321 34568999999999
No 326
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.49 E-value=0.00038 Score=74.93 Aligned_cols=94 Identities=13% Similarity=0.212 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhh---ccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEE--cccccccc------c----
Q 003038 212 NEDVMYVIENLM---SKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLP--LSISSFRH------M---- 276 (854)
Q Consensus 212 ~~ei~~v~~~L~---r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~--l~~~~l~~------~---- 276 (854)
....++++..|. +.....++|+||+|+|||++++.++..+..+.+. .+.++. ++...+.. |
T Consensus 25 ~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~----~~~~~~~~~~~~~~l~~i~~~lG~~~~ 100 (269)
T TIGR03015 25 SKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQERVV----AAKLVNTRVDAEDLLRMVAADFGLETE 100 (269)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeE----EeeeeCCCCCHHHHHHHHHHHcCCCCC
Confidence 344444554443 4445578999999999999999999876543321 011111 11111110 1
Q ss_pred --chHHHHHHHHHHHHHHHhhhCCCeEEEeCccccc
Q 003038 277 --NRVEVEQRVEEIKNLVRSCLGRGIVLNLGDLEWA 310 (854)
Q Consensus 277 --~rge~E~rl~~l~~~~~~~~~~~~ILfidel~~l 310 (854)
.+.+.-.++.+.+...... ++++||+|||+|++
T Consensus 101 ~~~~~~~~~~l~~~l~~~~~~-~~~~vliiDe~~~l 135 (269)
T TIGR03015 101 GRDKAALLRELEDFLIEQFAA-GKRALLVVDEAQNL 135 (269)
T ss_pred CCCHHHHHHHHHHHHHHHHhC-CCCeEEEEECcccC
Confidence 1222333444444333322 56899999999999
No 327
>PRK09183 transposase/IS protein; Provisional
Probab=97.49 E-value=0.00018 Score=77.52 Aligned_cols=87 Identities=11% Similarity=0.119 Sum_probs=52.3
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEE
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLI 738 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~Vili 738 (854)
.++|+||+|+|||.+|.+|+..+......+..+++.++. ...... ... + ++...+...+ ....+++|
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~-------~~l~~a--~~~-~-~~~~~~~~~~--~~~dlLii 170 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLL-------LQLSTA--QRQ-G-RYKTTLQRGV--MAPRLLII 170 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHH-------HHHHHH--HHC-C-cHHHHHHHHh--cCCCEEEE
Confidence 688999999999999999988764444444455544332 110000 000 0 1111122211 33479999
Q ss_pred ecCCC--CCHHHHHHHHHhhhc
Q 003038 739 EDVEQ--ADYCSQKGFKRAIES 758 (854)
Q Consensus 739 DEiek--a~~~v~~~Ll~~le~ 758 (854)
||+.. .+....+.|+++++.
T Consensus 171 Ddlg~~~~~~~~~~~lf~li~~ 192 (259)
T PRK09183 171 DEIGYLPFSQEEANLFFQVIAK 192 (259)
T ss_pred cccccCCCChHHHHHHHHHHHH
Confidence 99986 556677789999875
No 328
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.49 E-value=0.00027 Score=81.15 Aligned_cols=128 Identities=13% Similarity=0.101 Sum_probs=74.6
Q ss_pred CCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHH-HHHHHHHHHHHhhhCCCeEEEeCc
Q 003038 228 RNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVE-QRVEEIKNLVRSCLGRGIVLNLGD 306 (854)
Q Consensus 228 ~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E-~rl~~l~~~~~~~~~~~~ILfide 306 (854)
|+.+|+|+||+|||.++++++..+.+.. .+..++.++...+...+...+. ..+.++.+.++. .-+|+|||
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~-----~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~----~dlLiiDD 207 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENN-----PNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYRS----VDLLLIDD 207 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhC-----CCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHHh----CCEEEEeh
Confidence 4457999999999999999999886531 2467777776665443222221 122233333432 34899999
Q ss_pred cccc-cccccccccccccchhhhHHHHHHHhhccc--CCCCceEEEEEec-CHHHHHHhhccCCchhhhhccC---CCCC
Q 003038 307 LEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG--IGENARFWLMGIA-TFQSYMRCKSGHPSLETLWSLH---PLTI 379 (854)
Q Consensus 307 l~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~--~~g~g~l~lIgat-T~~ey~k~~~~~pale~~~~~~---~v~i 379 (854)
||.+ +... ...++-.++.. ..+ ...+|.++ .+.+... .++.|.+ ||. .|.|
T Consensus 208 i~~l~~~~~---------------~~~~l~~~~n~~~~~~--~~iiits~~~p~~l~~---l~~~l~S--Rl~~g~~v~i 265 (405)
T TIGR00362 208 IQFLAGKER---------------TQEEFFHTFNALHENG--KQIVLTSDRPPKELPG---LEERLRS--RFEWGLVVDI 265 (405)
T ss_pred hhhhcCCHH---------------HHHHHHHHHHHHHHCC--CCEEEecCCCHHHHhh---hhhhhhh--hccCCeEEEe
Confidence 9999 5422 11233344421 223 23444443 4555443 3677777 664 4677
Q ss_pred CCchHHH
Q 003038 380 PAGSLSL 386 (854)
Q Consensus 380 ~~~sl~~ 386 (854)
+.|+.+.
T Consensus 266 ~~pd~~~ 272 (405)
T TIGR00362 266 EPPDLET 272 (405)
T ss_pred CCCCHHH
Confidence 7666544
No 329
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.48 E-value=0.00081 Score=79.53 Aligned_cols=119 Identities=11% Similarity=0.037 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhhccCcCC-ceeecCCCCCHHHHHHHHHHHHHcCCC----Cc----------ccCCceEEEccccccccc
Q 003038 212 NEDVMYVIENLMSKRKRN-FVVVGECLASIEGVVRGVIDKIEKGDV----PE----------ALRDVKCLPLSISSFRHM 276 (854)
Q Consensus 212 ~~ei~~v~~~L~r~~k~n-~vLvGe~GvGKta~v~~la~~i~~~~v----p~----------~L~~~~~~~l~~~~l~~~ 276 (854)
+.-+..+...+..++-.+ .+|+||+|||||++++.+|..+....- |- ......++.++..+-.
T Consensus 22 ~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~~-- 99 (546)
T PRK14957 22 QHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRT-- 99 (546)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeeccccc--
Confidence 344555666665544444 679999999999999999998764211 10 0011244444432111
Q ss_pred chHHHHHHHHHHHHHHHhhh--CCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEec
Q 003038 277 NRVEVEQRVEEIKNLVRSCL--GRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIA 353 (854)
Q Consensus 277 ~rge~E~rl~~l~~~~~~~~--~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgat 353 (854)
... .++++++.+.... ++.-|++|||+|.+ .. +...+-+.|..-.+ .+.+|.+|
T Consensus 100 gvd----~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~-----------------a~naLLK~LEepp~--~v~fIL~T 156 (546)
T PRK14957 100 GVE----ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQ-----------------SFNALLKTLEEPPE--YVKFILAT 156 (546)
T ss_pred CHH----HHHHHHHHHHhhhhcCCcEEEEEechhhccHH-----------------HHHHHHHHHhcCCC--CceEEEEE
Confidence 111 2445555554321 45679999999999 42 12234444521112 48888888
Q ss_pred CH
Q 003038 354 TF 355 (854)
Q Consensus 354 T~ 355 (854)
|.
T Consensus 157 td 158 (546)
T PRK14957 157 TD 158 (546)
T ss_pred CC
Confidence 74
No 330
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.48 E-value=0.0008 Score=83.23 Aligned_cols=119 Identities=11% Similarity=0.013 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhhccCcCC-ceeecCCCCCHHHHHHHHHHHHHcCCCCcc----------------cCCceEEEccccccc
Q 003038 212 NEDVMYVIENLMSKRKRN-FVVVGECLASIEGVVRGVIDKIEKGDVPEA----------------LRDVKCLPLSISSFR 274 (854)
Q Consensus 212 ~~ei~~v~~~L~r~~k~n-~vLvGe~GvGKta~v~~la~~i~~~~vp~~----------------L~~~~~~~l~~~~l~ 274 (854)
+.-++.+...+..++.++ .||+|++|||||++++.||+.+...+-+.. -....|+.++..+..
T Consensus 21 e~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~~ 100 (824)
T PRK07764 21 EHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASHG 100 (824)
T ss_pred HHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEecccccC
Confidence 444555666666667777 589999999999999999999875321110 012345555443221
Q ss_pred ccchHHHHHHHHHHHHHHHhh--hCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEE
Q 003038 275 HMNRVEVEQRVEEIKNLVRSC--LGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMG 351 (854)
Q Consensus 275 ~~~rge~E~rl~~l~~~~~~~--~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIg 351 (854)
... .+++|++.+... .++.-|+||||+|.| .. +...+-++|+.-.. .+.+|.
T Consensus 101 --~Vd----~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~-----------------a~NaLLK~LEEpP~--~~~fIl 155 (824)
T PRK07764 101 --GVD----DARELRERAFFAPAESRYKIFIIDEAHMVTPQ-----------------GFNALLKIVEEPPE--HLKFIF 155 (824)
T ss_pred --CHH----HHHHHHHHHHhchhcCCceEEEEechhhcCHH-----------------HHHHHHHHHhCCCC--CeEEEE
Confidence 111 223343333211 034568999999999 43 22345566632112 488888
Q ss_pred ecCH
Q 003038 352 IATF 355 (854)
Q Consensus 352 atT~ 355 (854)
+||.
T Consensus 156 ~tt~ 159 (824)
T PRK07764 156 ATTE 159 (824)
T ss_pred EeCC
Confidence 7764
No 331
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.48 E-value=0.00023 Score=82.51 Aligned_cols=86 Identities=15% Similarity=0.226 Sum_probs=55.1
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEE
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFL 737 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~Vil 737 (854)
-+++|+||+|+|||.|+++++..+......++++.+..|. ... ... +. .+..+.+.+.. ....|++
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~-------~~~-~~~-l~---~~~~~~f~~~~--~~~dvLi 207 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFT-------EHL-VSA-IR---SGEMQRFRQFY--RNVDALF 207 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHH-------HHH-HHH-Hh---cchHHHHHHHc--ccCCEEE
Confidence 4689999999999999999999886545667777765554 110 000 00 01112233322 2356999
Q ss_pred EecCCCCC--HHHHHHHHHhhh
Q 003038 738 IEDVEQAD--YCSQKGFKRAIE 757 (854)
Q Consensus 738 iDEieka~--~~v~~~Ll~~le 757 (854)
||||+... ...|..|+..|.
T Consensus 208 IDDiq~l~~k~~~qeelf~l~N 229 (445)
T PRK12422 208 IEDIEVFSGKGATQEEFFHTFN 229 (445)
T ss_pred EcchhhhcCChhhHHHHHHHHH
Confidence 99999874 346777777665
No 332
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.47 E-value=0.00028 Score=81.85 Aligned_cols=78 Identities=13% Similarity=0.223 Sum_probs=50.7
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHH-HHHHHHHHHHHHhhhCCCeEEEeC
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEV-EQRVEEIKNLVRSCLGRGIVLNLG 305 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~-E~rl~~l~~~~~~~~~~~~ILfid 305 (854)
-|+.+|+||||+|||.++++++..+.+.. | +.+++.++...|...+...+ ...+.++....+. .+-||+||
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~-~----~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~---~~dvLlID 201 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNE-P----DLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRK---KVDVLLID 201 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhC-C----CCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHh---cCCEEEEe
Confidence 36788999999999999999999876532 2 45777777666544321111 1122233333332 35689999
Q ss_pred ccccc-cc
Q 003038 306 DLEWA-EF 312 (854)
Q Consensus 306 el~~l-~~ 312 (854)
|++.+ +.
T Consensus 202 Di~~l~~~ 209 (440)
T PRK14088 202 DVQFLIGK 209 (440)
T ss_pred chhhhcCc
Confidence 99988 54
No 333
>PRK12377 putative replication protein; Provisional
Probab=97.45 E-value=0.0003 Score=75.28 Aligned_cols=74 Identities=9% Similarity=0.083 Sum_probs=49.9
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHH--HHHHHHHHHHhhhCCCeEEE
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQ--RVEEIKNLVRSCLGRGIVLN 303 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~--rl~~l~~~~~~~~~~~~ILf 303 (854)
..+|++|+|+||||||.++.+++..+.+ ++..++-+++..|....+..+.. ...++++.+.+ .-+|+
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~-------~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~----~dLLi 168 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLA-------KGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCK----VDLLV 168 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHH-------cCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcC----CCEEE
Confidence 4578999999999999999999998865 34556666666665543222211 12234555543 45899
Q ss_pred eCccccc
Q 003038 304 LGDLEWA 310 (854)
Q Consensus 304 idel~~l 310 (854)
||||...
T Consensus 169 IDDlg~~ 175 (248)
T PRK12377 169 LDEIGIQ 175 (248)
T ss_pred EcCCCCC
Confidence 9999665
No 334
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.45 E-value=0.00025 Score=82.61 Aligned_cols=86 Identities=19% Similarity=0.274 Sum_probs=55.2
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCC--CCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEE
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGS--HNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRV 735 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~--~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~V 735 (854)
.+++|+||+|+|||.|+++++..+... ...++.+++.+|. .... .. +.. +-.+.+.+.++ ...|
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~-------~~~~-~~-~~~---~~~~~~~~~~~--~~dl 214 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFT-------NDFV-NA-LRN---NTMEEFKEKYR--SVDV 214 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH-------HHHH-HH-HHc---CcHHHHHHHHh--cCCE
Confidence 479999999999999999999988643 4557777776554 1110 00 000 11123444444 3569
Q ss_pred EEEecCCCCC--HHHHHHHHHhhh
Q 003038 736 FLIEDVEQAD--YCSQKGFKRAIE 757 (854)
Q Consensus 736 iliDEieka~--~~v~~~Ll~~le 757 (854)
++||||+... ...+..|+..|+
T Consensus 215 LiiDDi~~l~~~~~~~~~l~~~~n 238 (450)
T PRK00149 215 LLIDDIQFLAGKERTQEEFFHTFN 238 (450)
T ss_pred EEEehhhhhcCCHHHHHHHHHHHH
Confidence 9999999763 335666666664
No 335
>PRK06620 hypothetical protein; Validated
Probab=97.45 E-value=0.00032 Score=73.57 Aligned_cols=118 Identities=11% Similarity=0.096 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhhcc-C----cCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHH
Q 003038 212 NEDVMYVIENLMSK-R----KRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVE 286 (854)
Q Consensus 212 ~~ei~~v~~~L~r~-~----k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~ 286 (854)
.++....++-+.+. . ++..+|+||||+|||.++++++... +..+++. . ... +
T Consensus 24 N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~----------~~~~~~~--~-----~~~--~---- 80 (214)
T PRK06620 24 NDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLS----------NAYIIKD--I-----FFN--E---- 80 (214)
T ss_pred HHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhcc----------CCEEcch--h-----hhc--h----
Confidence 44555555555542 1 2457999999999999999876542 1222210 0 000 0
Q ss_pred HHHHHHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccC
Q 003038 287 EIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGH 365 (854)
Q Consensus 287 ~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~ 365 (854)
.... ...+|+|||||.+ +. ..-.+=|.+.. .| ...+|+++|+..+.. -
T Consensus 81 ----~~~~---~~d~lliDdi~~~~~~-----------------~lf~l~N~~~e-~g--~~ilits~~~p~~l~---l- 129 (214)
T PRK06620 81 ----EILE---KYNAFIIEDIENWQEP-----------------ALLHIFNIINE-KQ--KYLLLTSSDKSRNFT---L- 129 (214)
T ss_pred ----hHHh---cCCEEEEeccccchHH-----------------HHHHHHHHHHh-cC--CEEEEEcCCCccccc---h-
Confidence 1111 2458999999966 32 11222233321 33 588999999888653 3
Q ss_pred CchhhhhccC---CCCCCCchHH
Q 003038 366 PSLETLWSLH---PLTIPAGSLS 385 (854)
Q Consensus 366 pale~~~~~~---~v~i~~~sl~ 385 (854)
|.|.+ ||+ .+.|.+++.+
T Consensus 130 ~~L~S--Rl~~gl~~~l~~pd~~ 150 (214)
T PRK06620 130 PDLSS--RIKSVLSILLNSPDDE 150 (214)
T ss_pred HHHHH--HHhCCceEeeCCCCHH
Confidence 88988 777 5666666543
No 336
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.45 E-value=9.7e-05 Score=85.16 Aligned_cols=42 Identities=7% Similarity=0.086 Sum_probs=37.9
Q ss_pred cHHHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcC
Q 003038 211 RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKG 254 (854)
Q Consensus 211 r~~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~ 254 (854)
|++.|+.++.++. ...|++|.||||+|||.+|++|+..+...
T Consensus 25 re~vI~lll~aal--ag~hVLL~GpPGTGKT~LAraLa~~~~~~ 66 (498)
T PRK13531 25 RSHAIRLCLLAAL--SGESVFLLGPPGIAKSLIARRLKFAFQNA 66 (498)
T ss_pred cHHHHHHHHHHHc--cCCCEEEECCCChhHHHHHHHHHHHhccc
Confidence 8999999999987 68899999999999999999999886543
No 337
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.45 E-value=0.00025 Score=80.41 Aligned_cols=58 Identities=12% Similarity=0.202 Sum_probs=50.9
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccccccc-ccchH-HHHHHHHHHHHHHHh
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFR-HMNRV-EVEQRVEEIKNLVRS 294 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~-~~~rg-e~E~rl~~l~~~~~~ 294 (854)
++|++|+||||||||++++.||..+ +..++.++...+. .+|.| +.|..++.+++.+..
T Consensus 47 p~~ILLiGppG~GKT~lAraLA~~l----------~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A~~ 106 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAKLA----------NAPFIKVEATKFTEVGYVGRDVESMVRDLTDAAVK 106 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh----------CCeEEEeecceeecCCcccCCHHHHHHHHHHHHHH
Confidence 4799999999999999999999764 6789999998787 47888 899999999998864
No 338
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.44 E-value=0.00089 Score=78.64 Aligned_cols=94 Identities=9% Similarity=0.123 Sum_probs=57.0
Q ss_pred cHHHHHHHHHH-hhccC-cCCceeecCCCCCHHHHHHHHHHHHHcCCC--------C----------cccCCceEEEccc
Q 003038 211 RNEDVMYVIEN-LMSKR-KRNFVVVGECLASIEGVVRGVIDKIEKGDV--------P----------EALRDVKCLPLSI 270 (854)
Q Consensus 211 r~~ei~~v~~~-L~r~~-k~n~vLvGe~GvGKta~v~~la~~i~~~~v--------p----------~~L~~~~~~~l~~ 270 (854)
..+.+.+.+.. +...+ ....+|+||||||||++++.+|..+..... | .......++.+|.
T Consensus 25 Gq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eida 104 (507)
T PRK06645 25 GQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDA 104 (507)
T ss_pred CcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeec
Confidence 55665555554 33322 257899999999999999999998865321 1 0111234555544
Q ss_pred ccccccchHHHHHHHHHHHHHHHhhh--CCCeEEEeCccccc
Q 003038 271 SSFRHMNRVEVEQRVEEIKNLVRSCL--GRGIVLNLGDLEWA 310 (854)
Q Consensus 271 ~~l~~~~rge~E~rl~~l~~~~~~~~--~~~~ILfidel~~l 310 (854)
++- .... .++++++.+.... +..-|++|||+|.+
T Consensus 105 as~--~~vd----~Ir~iie~a~~~P~~~~~KVvIIDEa~~L 140 (507)
T PRK06645 105 ASK--TSVD----DIRRIIESAEYKPLQGKHKIFIIDEVHML 140 (507)
T ss_pred cCC--CCHH----HHHHHHHHHHhccccCCcEEEEEEChhhc
Confidence 321 1222 3555666665321 44678999999999
No 339
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.40 E-value=0.0012 Score=71.54 Aligned_cols=97 Identities=9% Similarity=0.198 Sum_probs=66.8
Q ss_pred cceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEc-cccccCcCCCccccccccccCC-CCCCchHHHHHHHHHcCCC
Q 003038 656 EETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIA-LSSFSSTRADSTEDSRNKRSRD-EQSCSYIERFAEAVSNNPH 733 (854)
Q Consensus 656 p~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id-~s~~~~~~~~s~e~~~~~rl~~-~~g~g~~e~L~eav~~~p~ 733 (854)
+.+.++|.||+|+|||++.+++...+......++.+. -.|+.- +....-.+. ..++.|.+-+..++|.+|
T Consensus 79 ~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~-------~~~~q~~v~~~~~~~~~~~l~~~lR~~P- 150 (264)
T cd01129 79 PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI-------PGINQVQVNEKAGLTFARGLRAILRQDP- 150 (264)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC-------CCceEEEeCCcCCcCHHHHHHHHhccCC-
Confidence 3468999999999999999999888755445666663 223321 110000011 223467677888888887
Q ss_pred EEEEEecCCCCCHHHHHHHHHhhhcCeEe
Q 003038 734 RVFLIEDVEQADYCSQKGFKRAIESGRIV 762 (854)
Q Consensus 734 ~ViliDEieka~~~v~~~Ll~~le~G~l~ 762 (854)
.+|++.||. +++....++++..+|...
T Consensus 151 D~i~vgEiR--~~e~a~~~~~aa~tGh~v 177 (264)
T cd01129 151 DIIMVGEIR--DAETAEIAVQAALTGHLV 177 (264)
T ss_pred CEEEeccCC--CHHHHHHHHHHHHcCCcE
Confidence 788899998 777778888999888654
No 340
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.00058 Score=84.27 Aligned_cols=98 Identities=13% Similarity=0.207 Sum_probs=62.2
Q ss_pred EEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCC-chHH----HHHHHHHcCCCE
Q 003038 660 LFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSC-SYIE----RFAEAVSNNPHR 734 (854)
Q Consensus 660 lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~-g~~e----~L~eav~~~p~~ 734 (854)
+||+||+|+|||.+|++||...-..+.+ +.+.|.... +. .+ .| |..| .|++-.+++.++
T Consensus 302 vL~~GppGTGkTl~araLa~~~s~~~~k-isffmrkga-------D~--ls------kwvgEaERqlrllFeeA~k~qPS 365 (1080)
T KOG0732|consen 302 VLFHGPPGTGKTLMARALAAACSRGNRK-ISFFMRKGA-------DC--LS------KWVGEAERQLRLLFEEAQKTQPS 365 (1080)
T ss_pred eeecCCCCCchhHHHHhhhhhhcccccc-cchhhhcCc-------hh--hc------cccCcHHHHHHHHHHHHhccCce
Confidence 6899999999999999999988433332 333333222 00 11 12 4444 467777888889
Q ss_pred EEEEecCCC-----------CCHHHHHHHHHhhhcCeEecCCCceeecCCeEEEEecCC
Q 003038 735 VFLIEDVEQ-----------ADYCSQKGFKRAIESGRIVTSSGDEVSLGDAIVILSCES 782 (854)
Q Consensus 735 ViliDEiek-----------a~~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn~ 782 (854)
|||||||+= .|..+...||-.|+- .++ .+..++|=++|-
T Consensus 366 IIffdeIdGlapvrSskqEqih~SIvSTLLaLmdG---lds------RgqVvvigATnR 415 (1080)
T KOG0732|consen 366 IIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDG---LDS------RGQVVVIGATNR 415 (1080)
T ss_pred EEeccccccccccccchHHHhhhhHHHHHHHhccC---CCC------CCceEEEcccCC
Confidence 999999993 344566666666652 111 234556667764
No 341
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.40 E-value=0.00013 Score=69.28 Aligned_cols=82 Identities=10% Similarity=0.133 Sum_probs=48.9
Q ss_pred cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccc------------c----chHHHHHHHHHH
Q 003038 225 KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRH------------M----NRVEVEQRVEEI 288 (854)
Q Consensus 225 ~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~------------~----~rge~E~rl~~l 288 (854)
++++.++++||||+|||++++.+++....-..+.. ...++.+++..... + .....++-...+
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~ 79 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKN--HPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLL 79 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCC--CEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccC--CCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHH
Confidence 46788999999999999999999988653100000 45666666543221 0 112344555666
Q ss_pred HHHHHhhhCCCeEEEeCccccc
Q 003038 289 KNLVRSCLGRGIVLNLGDLEWA 310 (854)
Q Consensus 289 ~~~~~~~~~~~~ILfidel~~l 310 (854)
.+.+... +..+|+|||+|.+
T Consensus 80 ~~~l~~~--~~~~lviDe~~~l 99 (131)
T PF13401_consen 80 IDALDRR--RVVLLVIDEADHL 99 (131)
T ss_dssp HHHHHHC--TEEEEEEETTHHH
T ss_pred HHHHHhc--CCeEEEEeChHhc
Confidence 6666664 3469999999998
No 342
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.40 E-value=7.9e-05 Score=75.32 Aligned_cols=75 Identities=16% Similarity=0.271 Sum_probs=50.8
Q ss_pred cCcCCceeecCCCCCHHHHHHHHHHHHH-cCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHH----HhhhCCC
Q 003038 225 KRKRNFVVVGECLASIEGVVRGVIDKIE-KGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLV----RSCLGRG 299 (854)
Q Consensus 225 ~~k~n~vLvGe~GvGKta~v~~la~~i~-~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~----~~~~~~~ 299 (854)
|.+-|.+|+||+|||||.+++.||+.+. .+ ...++.+|++.+.. .++.+.-+..++... ... ..+
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~~-------~~~~~~~d~s~~~~--~~~~~~~~~~l~~~~~~~v~~~-~~g 70 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLFVGS-------ERPLIRIDMSEYSE--GDDVESSVSKLLGSPPGYVGAE-EGG 70 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT-SS-------CCEEEEEEGGGHCS--HHHCSCHCHHHHHHTTCHHHHH-HHT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhccCC-------ccchHHHhhhcccc--cchHHhhhhhhhhcccceeecc-chh
Confidence 3567899999999999999999999875 32 35899999988876 222222222222211 111 112
Q ss_pred eEEEeCccccc
Q 003038 300 IVLNLGDLEWA 310 (854)
Q Consensus 300 ~ILfidel~~l 310 (854)
|||+|||+-+
T Consensus 71 -VVllDEidKa 80 (171)
T PF07724_consen 71 -VVLLDEIDKA 80 (171)
T ss_dssp -EEEEETGGGC
T ss_pred -hhhhHHHhhc
Confidence 8999999999
No 343
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00035 Score=78.95 Aligned_cols=65 Identities=9% Similarity=0.207 Sum_probs=51.1
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeC
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLG 305 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfid 305 (854)
=||.-+|+||||+|||+++.++|.- -+..|+-|+++.... ..| |+.|+-... ..-||.|.
T Consensus 234 wKRGYLLYGPPGTGKSS~IaAmAn~----------L~ydIydLeLt~v~~----n~d--Lr~LL~~t~----~kSIivIE 293 (457)
T KOG0743|consen 234 WKRGYLLYGPPGTGKSSFIAAMANY----------LNYDIYDLELTEVKL----DSD--LRHLLLATP----NKSILLIE 293 (457)
T ss_pred hhccceeeCCCCCCHHHHHHHHHhh----------cCCceEEeeeccccC----cHH--HHHHHHhCC----CCcEEEEe
Confidence 4788999999999999999999965 366888888876543 334 666665544 46799999
Q ss_pred ccccc
Q 003038 306 DLEWA 310 (854)
Q Consensus 306 el~~l 310 (854)
||+.-
T Consensus 294 DIDcs 298 (457)
T KOG0743|consen 294 DIDCS 298 (457)
T ss_pred ecccc
Confidence 99988
No 344
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.39 E-value=0.00054 Score=71.46 Aligned_cols=77 Identities=12% Similarity=0.189 Sum_probs=61.8
Q ss_pred HHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHh
Q 003038 215 VMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRS 294 (854)
Q Consensus 215 i~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~ 294 (854)
++...+-+.-..-||++|.|-=|+||+++|+++-..+.. ++.++|.++...+.. |-.|+++++.
T Consensus 73 ~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~-------~glrLVEV~k~dl~~---------Lp~l~~~Lr~ 136 (287)
T COG2607 73 VRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYAD-------EGLRLVEVDKEDLAT---------LPDLVELLRA 136 (287)
T ss_pred HHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHh-------cCCeEEEEcHHHHhh---------HHHHHHHHhc
Confidence 444444445457899999999999999999999888765 466799998877764 6778888887
Q ss_pred hhCCCeEEEeCccc
Q 003038 295 CLGRGIVLNLGDLE 308 (854)
Q Consensus 295 ~~~~~~ILfidel~ 308 (854)
. +..+|||+||+-
T Consensus 137 ~-~~kFIlFcDDLS 149 (287)
T COG2607 137 R-PEKFILFCDDLS 149 (287)
T ss_pred C-CceEEEEecCCC
Confidence 6 778999999983
No 345
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.38 E-value=0.00022 Score=79.67 Aligned_cols=140 Identities=11% Similarity=0.038 Sum_probs=80.9
Q ss_pred cHHHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccc--cchHH--HHHHHH
Q 003038 211 RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRH--MNRVE--VEQRVE 286 (854)
Q Consensus 211 r~~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~--~~rge--~E~rl~ 286 (854)
+++.+..++..+. .+.+++|.||||||||.+|+.+|+.+. ..++.+.+..... -..|. +..+..
T Consensus 29 ~~~~~~~~l~a~~--~~~~vll~G~PG~gKT~la~~lA~~l~----------~~~~~i~~t~~l~p~d~~G~~~~~~~~~ 96 (329)
T COG0714 29 DEEVIELALLALL--AGGHVLLEGPPGVGKTLLARALARALG----------LPFVRIQCTPDLLPSDLLGTYAYAALLL 96 (329)
T ss_pred cHHHHHHHHHHHH--cCCCEEEECCCCccHHHHHHHHHHHhC----------CCeEEEecCCCCCHHHhcCchhHhhhhc
Confidence 6777777777766 588999999999999999999998863 4566665543332 12332 222221
Q ss_pred H--HHHHHHhhhCCCe--EEEeCccccc-c-ccccccccccccchhhhHHHHHHHhhc-c------cCC---CCceEEEE
Q 003038 287 E--IKNLVRSCLGRGI--VLNLGDLEWA-E-FRASSSEQVRGYYCSIEHIIMEIGKLV-C------GIG---ENARFWLM 350 (854)
Q Consensus 287 ~--l~~~~~~~~~~~~--ILfidel~~l-~-~~~~~~~~~~~~~~~~~~~~~~~~~ll-~------~~~---g~g~l~lI 350 (854)
+ .+..+....-..+ |||+|||... . ..+ .+-.+| . ..+ -...+.+|
T Consensus 97 ~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~------------------aLl~~l~e~~vtv~~~~~~~~~~~f~vi 158 (329)
T COG0714 97 EPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQN------------------ALLEALEERQVTVPGLTTIRLPPPFIVI 158 (329)
T ss_pred cCCeEEEecCCcccccceEEEEeccccCCHHHHH------------------HHHHHHhCcEEEECCcCCcCCCCCCEEE
Confidence 1 1111110001123 9999999887 2 211 111111 1 001 01258888
Q ss_pred EecCHHHHHHhhccCCchhhhh-ccCCCCCC
Q 003038 351 GIATFQSYMRCKSGHPSLETLW-SLHPLTIP 380 (854)
Q Consensus 351 gatT~~ey~k~~~~~pale~~~-~~~~v~i~ 380 (854)
++.++.+|.--..-..|+-++| -.+-|..|
T Consensus 159 aT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp 189 (329)
T COG0714 159 ATQNPGEYEGTYPLPEALLDRFLLRIYVDYP 189 (329)
T ss_pred EccCccccCCCcCCCHHHHhhEEEEEecCCC
Confidence 8888888776555567777744 22555555
No 346
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.38 E-value=0.0015 Score=78.06 Aligned_cols=120 Identities=12% Similarity=0.045 Sum_probs=69.4
Q ss_pred HHH-HHHHHHHhhccCcCCc-eeecCCCCCHHHHHHHHHHHHHcCCCCc----c------------cCCceEEEcccccc
Q 003038 212 NED-VMYVIENLMSKRKRNF-VVVGECLASIEGVVRGVIDKIEKGDVPE----A------------LRDVKCLPLSISSF 273 (854)
Q Consensus 212 ~~e-i~~v~~~L~r~~k~n~-vLvGe~GvGKta~v~~la~~i~~~~vp~----~------------L~~~~~~~l~~~~l 273 (854)
.+. ++.+...+.+.+..+. +|+||+|+|||++++.+|..+....-|. . -....|+.++.++.
T Consensus 18 q~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~ 97 (584)
T PRK14952 18 QEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASH 97 (584)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEeccccc
Confidence 344 4445555565566774 8999999999999999999887422111 0 01235666655432
Q ss_pred cccchHHHHHHHHHHHHHHHhhh--CCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEE
Q 003038 274 RHMNRVEVEQRVEEIKNLVRSCL--GRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLM 350 (854)
Q Consensus 274 ~~~~rge~E~rl~~l~~~~~~~~--~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lI 350 (854)
. ...+ +++|++.+.... +..-|++|||+|.+ .. +...+-+.|..-.+ .+.+|
T Consensus 98 ~--gvd~----iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~-----------------A~NALLK~LEEpp~--~~~fI 152 (584)
T PRK14952 98 G--GVDD----TRELRDRAFYAPAQSRYRIFIVDEAHMVTTA-----------------GFNALLKIVEEPPE--HLIFI 152 (584)
T ss_pred c--CHHH----HHHHHHHHHhhhhcCCceEEEEECCCcCCHH-----------------HHHHHHHHHhcCCC--CeEEE
Confidence 1 1222 334555544321 34568999999999 43 12233344421122 48888
Q ss_pred EecCHH
Q 003038 351 GIATFQ 356 (854)
Q Consensus 351 gatT~~ 356 (854)
.+||..
T Consensus 153 L~tte~ 158 (584)
T PRK14952 153 FATTEP 158 (584)
T ss_pred EEeCCh
Confidence 888754
No 347
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.38 E-value=0.00034 Score=81.10 Aligned_cols=86 Identities=19% Similarity=0.209 Sum_probs=53.1
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCC--CCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEE
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGS--HNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVF 736 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~--~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~Vi 736 (854)
+++|+||+|+|||.|+++++..+-.. ...++.+++..|. .... ..+.. +-.+.+.+..+ ....|+
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~-------~~~~-~~~~~----~~~~~f~~~~~-~~~dvL 198 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL-------NDLV-DSMKE----GKLNEFREKYR-KKVDVL 198 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH-------HHHH-HHHhc----ccHHHHHHHHH-hcCCEE
Confidence 59999999999999999999987532 3466777766554 1110 00000 11123334333 245799
Q ss_pred EEecCCCCC--HHHHHHHHHhhh
Q 003038 737 LIEDVEQAD--YCSQKGFKRAIE 757 (854)
Q Consensus 737 liDEieka~--~~v~~~Ll~~le 757 (854)
+|||++..- ...|..|+..|.
T Consensus 199 lIDDi~~l~~~~~~q~elf~~~n 221 (440)
T PRK14088 199 LIDDVQFLIGKTGVQTELFHTFN 221 (440)
T ss_pred EEechhhhcCcHHHHHHHHHHHH
Confidence 999999763 345566666654
No 348
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.36 E-value=0.0013 Score=78.98 Aligned_cols=94 Identities=13% Similarity=0.138 Sum_probs=55.1
Q ss_pred cHHHHHHHHHHhhccC-cCCceeecCCCCCHHHHHHHHHHHHHcCCCCcc--------------cCCceEEEcccccccc
Q 003038 211 RNEDVMYVIENLMSKR-KRNFVVVGECLASIEGVVRGVIDKIEKGDVPEA--------------LRDVKCLPLSISSFRH 275 (854)
Q Consensus 211 r~~ei~~v~~~L~r~~-k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~--------------L~~~~~~~l~~~~l~~ 275 (854)
.+.-++.+...+..++ ....||+|++|||||++++.||..+.....+.. -+...++.++.++-.
T Consensus 21 Qe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~- 99 (709)
T PRK08691 21 QEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNT- 99 (709)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccccC-
Confidence 3444555555555444 345799999999999999999998764321100 001233444432211
Q ss_pred cchHHHHHHHHHHHHHHHhhh--CCCeEEEeCccccc
Q 003038 276 MNRVEVEQRVEEIKNLVRSCL--GRGIVLNLGDLEWA 310 (854)
Q Consensus 276 ~~rge~E~rl~~l~~~~~~~~--~~~~ILfidel~~l 310 (854)
.. ..++++++.+.... ++.-|++|||+|.+
T Consensus 100 -gV----d~IRelle~a~~~P~~gk~KVIIIDEad~L 131 (709)
T PRK08691 100 -GI----DNIREVLENAQYAPTAGKYKVYIIDEVHML 131 (709)
T ss_pred -CH----HHHHHHHHHHHhhhhhCCcEEEEEECcccc
Confidence 11 24556666554221 44579999999998
No 349
>PRK06921 hypothetical protein; Provisional
Probab=97.36 E-value=0.00033 Score=75.87 Aligned_cols=73 Identities=15% Similarity=0.120 Sum_probs=48.5
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeC
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLG 305 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfid 305 (854)
..+|++|+|+||+|||.++.++|..+.+. .+..++-+....+....+..+ ..+.+.++.+.+ -.+|+||
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~------~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~~~----~dlLiID 184 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRK------KGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRMKK----VEVLFID 184 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhh------cCceEEEEEHHHHHHHHHHHH-HHHHHHHHHhcC----CCEEEEe
Confidence 46889999999999999999999987642 145666666555444322222 223333444433 4589999
Q ss_pred cccc
Q 003038 306 DLEW 309 (854)
Q Consensus 306 el~~ 309 (854)
||+.
T Consensus 185 Dl~~ 188 (266)
T PRK06921 185 DLFK 188 (266)
T ss_pred cccc
Confidence 9966
No 350
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.35 E-value=0.0015 Score=66.82 Aligned_cols=135 Identities=15% Similarity=0.066 Sum_probs=75.9
Q ss_pred HHHhhccCc-CCceeecCCCCCHHHHHHHHHHHHHcCC----CCc------------ccCCceEEEcccccccccchHHH
Q 003038 219 IENLMSKRK-RNFVVVGECLASIEGVVRGVIDKIEKGD----VPE------------ALRDVKCLPLSISSFRHMNRVEV 281 (854)
Q Consensus 219 ~~~L~r~~k-~n~vLvGe~GvGKta~v~~la~~i~~~~----vp~------------~L~~~~~~~l~~~~l~~~~rge~ 281 (854)
.+.+.+++- +..+|+||+|+|||++++.++..+.... .|- .-.+..++..+...+ ..
T Consensus 5 ~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~---~~--- 78 (188)
T TIGR00678 5 KRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSI---KV--- 78 (188)
T ss_pred HHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcC---CH---
Confidence 344444444 5689999999999999999999987531 110 001122222221110 11
Q ss_pred HHHHHHHHHHHHhhh--CCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHH
Q 003038 282 EQRVEEIKNLVRSCL--GRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSY 358 (854)
Q Consensus 282 E~rl~~l~~~~~~~~--~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey 358 (854)
+.++++++.+.... ++.-|++|||+|.+ .. +...+-..+..... ...+|.+|+..
T Consensus 79 -~~i~~i~~~~~~~~~~~~~kviiide~~~l~~~-----------------~~~~Ll~~le~~~~--~~~~il~~~~~-- 136 (188)
T TIGR00678 79 -DQVRELVEFLSRTPQESGRRVVIIEDAERMNEA-----------------AANALLKTLEEPPP--NTLFILITPSP-- 136 (188)
T ss_pred -HHHHHHHHHHccCcccCCeEEEEEechhhhCHH-----------------HHHHHHHHhcCCCC--CeEEEEEECCh--
Confidence 34555666665421 45678999999999 43 12234444522111 35555555422
Q ss_pred HHhhccCCchhhhhccCCCCCCCchHHH
Q 003038 359 MRCKSGHPSLETLWSLHPLTIPAGSLSL 386 (854)
Q Consensus 359 ~k~~~~~pale~~~~~~~v~i~~~sl~~ 386 (854)
. ...|++.+ |.+.|.++..+-..
T Consensus 137 ~---~l~~~i~s--r~~~~~~~~~~~~~ 159 (188)
T TIGR00678 137 E---KLLPTIRS--RCQVLPFPPLSEEA 159 (188)
T ss_pred H---hChHHHHh--hcEEeeCCCCCHHH
Confidence 2 24678887 77778887765443
No 351
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.34 E-value=0.0008 Score=75.01 Aligned_cols=128 Identities=11% Similarity=0.088 Sum_probs=74.3
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHH-HH--HHHHHHHHHHHhhhCCCeEE
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVE-VE--QRVEEIKNLVRSCLGRGIVL 302 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge-~E--~rl~~l~~~~~~~~~~~~IL 302 (854)
.++|++|+|+||+|||.++.++|..+.+ +|..|+-++...|....+.. ++ ......++.+.+ --+|
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~-------~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~----~DLL 250 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLD-------RGKSVIYRTADELIEILREIRFNNDKELEEVYDLLIN----CDLL 250 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHH-------CCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhcc----CCEE
Confidence 4589999999999999999999998865 35677777776665432211 11 111222444443 3489
Q ss_pred EeCccccc-cccccccccccccchhhhHHHHHHHhhccc--CCCCceEEEEEec--CHHHHHHhhccCCchhhh-hccCC
Q 003038 303 NLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG--IGENARFWLMGIA--TFQSYMRCKSGHPSLETL-WSLHP 376 (854)
Q Consensus 303 fidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~--~~g~g~l~lIgat--T~~ey~k~~~~~pale~~-~~~~~ 376 (854)
+|||+... ... +....+-+++-. ..+ ..+|-+| +++++...+ .++-+.|+ |.+..
T Consensus 251 IIDDlG~e~~t~---------------~~~~~Lf~iin~R~~~~---k~tIiTSNl~~~el~~~~-~eri~SRL~~~~~~ 311 (329)
T PRK06835 251 IIDDLGTEKITE---------------FSKSELFNLINKRLLRQ---KKMIISTNLSLEELLKTY-SERISSRLLGNFTL 311 (329)
T ss_pred EEeccCCCCCCH---------------HHHHHHHHHHHHHHHCC---CCEEEECCCCHHHHHHHH-hHHHHHHHHcCCEE
Confidence 99999776 321 123345556522 222 2344444 467776542 23333443 55555
Q ss_pred CCCCCch
Q 003038 377 LTIPAGS 383 (854)
Q Consensus 377 v~i~~~s 383 (854)
|.+...+
T Consensus 312 i~~~G~d 318 (329)
T PRK06835 312 LKFYGED 318 (329)
T ss_pred EEecCcC
Confidence 6555444
No 352
>PRK08116 hypothetical protein; Validated
Probab=97.33 E-value=0.00049 Score=74.65 Aligned_cols=71 Identities=11% Similarity=0.111 Sum_probs=49.1
Q ss_pred CceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHH----HHHHHHHHHHHHhhhCCCeEEEe
Q 003038 229 NFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEV----EQRVEEIKNLVRSCLGRGIVLNL 304 (854)
Q Consensus 229 n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~----E~rl~~l~~~~~~~~~~~~ILfi 304 (854)
.++|+|+||+|||.++.+++..+.+. +..++-++...|...++..+ .....++++.+.+. -+|+|
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~-------~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~----dlLvi 184 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEK-------GVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNA----DLLIL 184 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCC----CEEEE
Confidence 49999999999999999999998652 45667777666655433222 22334455555543 38999
Q ss_pred Cccccc
Q 003038 305 GDLEWA 310 (854)
Q Consensus 305 del~~l 310 (854)
||++..
T Consensus 185 DDlg~e 190 (268)
T PRK08116 185 DDLGAE 190 (268)
T ss_pred ecccCC
Confidence 999654
No 353
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.33 E-value=0.0012 Score=74.87 Aligned_cols=141 Identities=9% Similarity=0.050 Sum_probs=78.4
Q ss_pred cHHHHHHHHHHhhccCc-CCceeecCCCCCHHHHHHHHHHHHHcCCCCcccC--CceEEEcccccccccchHHHHHHHHH
Q 003038 211 RNEDVMYVIENLMSKRK-RNFVVVGECLASIEGVVRGVIDKIEKGDVPEALR--DVKCLPLSISSFRHMNRVEVEQRVEE 287 (854)
Q Consensus 211 r~~ei~~v~~~L~r~~k-~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~--~~~~~~l~~~~l~~~~rge~E~rl~~ 287 (854)
.++-++.+...+..++. ++.+|+||||+|||++++.++..+.....+..-. +..++.++... ..+ ...+++
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~----~~~--~~~i~~ 95 (367)
T PRK14970 22 QSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAAS----NNS--VDDIRN 95 (367)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEecccc----CCC--HHHHHH
Confidence 44555666666655433 4688999999999999999999886633221111 23344443221 111 134555
Q ss_pred HHHHHHhhh--CCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhcc
Q 003038 288 IKNLVRSCL--GRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSG 364 (854)
Q Consensus 288 l~~~~~~~~--~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~ 364 (854)
+++++.... ++.-|++|||++.+ .. ....+-+.+..... ...+|.+|+.. . ..
T Consensus 96 l~~~~~~~p~~~~~kiviIDE~~~l~~~-----------------~~~~ll~~le~~~~--~~~~Il~~~~~--~---kl 151 (367)
T PRK14970 96 LIDQVRIPPQTGKYKIYIIDEVHMLSSA-----------------AFNAFLKTLEEPPA--HAIFILATTEK--H---KI 151 (367)
T ss_pred HHHHHhhccccCCcEEEEEeChhhcCHH-----------------HHHHHHHHHhCCCC--ceEEEEEeCCc--c---cC
Confidence 666554321 34568999999888 42 11222233421112 35666666531 1 23
Q ss_pred CCchhhhhccCCCCCCCch
Q 003038 365 HPSLETLWSLHPLTIPAGS 383 (854)
Q Consensus 365 ~pale~~~~~~~v~i~~~s 383 (854)
.|++.+ |.+.|.++.++
T Consensus 152 ~~~l~s--r~~~v~~~~~~ 168 (367)
T PRK14970 152 IPTILS--RCQIFDFKRIT 168 (367)
T ss_pred CHHHHh--cceeEecCCcc
Confidence 467766 66666666544
No 354
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.32 E-value=0.0021 Score=76.71 Aligned_cols=43 Identities=9% Similarity=0.115 Sum_probs=30.9
Q ss_pred cHHHHHHHHHHhhccC--cCCceeecCCCCCHHHHHHHHHHHHHc
Q 003038 211 RNEDVMYVIENLMSKR--KRNFVVVGECLASIEGVVRGVIDKIEK 253 (854)
Q Consensus 211 r~~ei~~v~~~L~r~~--k~n~vLvGe~GvGKta~v~~la~~i~~ 253 (854)
..+.+..++.-..... ..+.+|+||+|||||++++.+|+.+..
T Consensus 20 GQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 20 GQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred CCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 3455544444433332 456788999999999999999999865
No 355
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.32 E-value=0.00082 Score=72.32 Aligned_cols=94 Identities=7% Similarity=0.142 Sum_probs=53.1
Q ss_pred ceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcc--ccccCcCCCcccc-ccccccCC--CCCCch---HHHHH---
Q 003038 657 ETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIAL--SSFSSTRADSTED-SRNKRSRD--EQSCSY---IERFA--- 725 (854)
Q Consensus 657 ~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~--s~~~~~~~~s~e~-~~~~rl~~--~~g~g~---~e~L~--- 725 (854)
.+.++++||+|+|||++++.+++.+-.. .++...+ ..+. ..+- ..+....+ ..+... ...|.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~--~~~~~~~~~~~~~-----~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l 115 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQE--RVVAAKLVNTRVD-----AEDLLRMVAADFGLETEGRDKAALLRELEDFL 115 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCC--CeEEeeeeCCCCC-----HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Confidence 4588999999999999999999887421 2222111 1111 0000 00111111 111111 11232
Q ss_pred -HHHHcCCCEEEEEecCCCCCHHHHHHHHHhhh
Q 003038 726 -EAVSNNPHRVFLIEDVEQADYCSQKGFKRAIE 757 (854)
Q Consensus 726 -eav~~~p~~ViliDEieka~~~v~~~Ll~~le 757 (854)
.....+...||+|||++.+++...+.|....+
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~ 148 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRMLSN 148 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHHHhC
Confidence 33345666899999999999998887765443
No 356
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.32 E-value=0.00054 Score=73.19 Aligned_cols=73 Identities=10% Similarity=0.132 Sum_probs=52.3
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHH---HHHHHHHHHHHhhhCCCeEEE
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVE---QRVEEIKNLVRSCLGRGIVLN 303 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E---~rl~~l~~~~~~~~~~~~ILf 303 (854)
.++.+|.|+||||||.++.++|..+.+ ++..++-+++..+....++.+. ....++++.+.. .-+|+
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~-------~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~~----~dlLv 167 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLL-------RGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLSN----VDLLV 167 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHh-------cCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhcc----CCEEE
Confidence 358999999999999999999998765 2457777777777665444432 223345555553 45899
Q ss_pred eCccccc
Q 003038 304 LGDLEWA 310 (854)
Q Consensus 304 idel~~l 310 (854)
|||+...
T Consensus 168 IDDig~~ 174 (244)
T PRK07952 168 IDEIGVQ 174 (244)
T ss_pred EeCCCCC
Confidence 9999776
No 357
>PF13173 AAA_14: AAA domain
Probab=97.31 E-value=0.00038 Score=66.69 Aligned_cols=72 Identities=6% Similarity=0.071 Sum_probs=45.6
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeCc
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLGD 306 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfide 306 (854)
++.++|.|+.|||||++++.+++... ...+++.+++.........+.+ +.+.+..... .++.+|||||
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~--------~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~i~iDE 69 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL--------PPENILYINFDDPRDRRLADPD--LLEYFLELIK--PGKKYIFIDE 69 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc--------ccccceeeccCCHHHHHHhhhh--hHHHHHHhhc--cCCcEEEEeh
Confidence 45689999999999999999998764 1235666666544331111111 2222222211 2578999999
Q ss_pred cccc
Q 003038 307 LEWA 310 (854)
Q Consensus 307 l~~l 310 (854)
+|.+
T Consensus 70 iq~~ 73 (128)
T PF13173_consen 70 IQYL 73 (128)
T ss_pred hhhh
Confidence 9998
No 358
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.31 E-value=0.0017 Score=72.90 Aligned_cols=94 Identities=12% Similarity=0.152 Sum_probs=57.7
Q ss_pred cHHHHHHHHHHhhccCcC-CceeecCCCCCHHHHHHHHHHHHHcCCCCcc--------------cCCceEEEcccccccc
Q 003038 211 RNEDVMYVIENLMSKRKR-NFVVVGECLASIEGVVRGVIDKIEKGDVPEA--------------LRDVKCLPLSISSFRH 275 (854)
Q Consensus 211 r~~ei~~v~~~L~r~~k~-n~vLvGe~GvGKta~v~~la~~i~~~~vp~~--------------L~~~~~~~l~~~~l~~ 275 (854)
.++.++.+...+.+++.. ..+|+||||+|||++++.+++.+...+.+.. .....++.++.....
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~~~- 97 (355)
T TIGR02397 19 QEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAASNN- 97 (355)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeeccccC-
Confidence 566677777777655444 4688999999999999999999865432210 112234444332110
Q ss_pred cchHHHHHHHHHHHHHHHhhh--CCCeEEEeCccccc
Q 003038 276 MNRVEVEQRVEEIKNLVRSCL--GRGIVLNLGDLEWA 310 (854)
Q Consensus 276 ~~rge~E~rl~~l~~~~~~~~--~~~~ILfidel~~l 310 (854)
.. ..++++++.+.... ++.-|++|||++.+
T Consensus 98 -~~----~~~~~l~~~~~~~p~~~~~~vviidea~~l 129 (355)
T TIGR02397 98 -GV----DDIREILDNVKYAPSSGKYKVYIIDEVHML 129 (355)
T ss_pred -CH----HHHHHHHHHHhcCcccCCceEEEEeChhhc
Confidence 11 12455666665431 34568999999888
No 359
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.31 E-value=0.00036 Score=79.20 Aligned_cols=59 Identities=10% Similarity=0.207 Sum_probs=52.2
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccc-cchH-HHHHHHHHHHHHHHhh
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRH-MNRV-EVEQRVEEIKNLVRSC 295 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~-~~rg-e~E~rl~~l~~~~~~~ 295 (854)
+.|++|+||||||||++++.||..+ +..|+.+|...|.. ||.| +.|..++++++.+...
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l----------~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A~~~ 110 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLA----------NAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKM 110 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh----------CChheeecchhhccCCcccCCHHHHHHHHHHHHHHH
Confidence 5799999999999999999999874 67899999998885 7999 8999999999998654
No 360
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.30 E-value=0.0014 Score=73.18 Aligned_cols=51 Identities=12% Similarity=0.120 Sum_probs=36.7
Q ss_pred HHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccccccc
Q 003038 216 MYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFR 274 (854)
Q Consensus 216 ~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~ 274 (854)
.+.+.-++ +...+++|+||+|+||+.+|+.+-..-.+ ++..|+.++++.+-
T Consensus 12 ~~~~~~~a-~~~~pVLI~GE~GtGK~~lAr~iH~~s~r-------~~~pfv~vnc~~~~ 62 (329)
T TIGR02974 12 LEQVSRLA-PLDRPVLIIGERGTGKELIAARLHYLSKR-------WQGPLVKLNCAALS 62 (329)
T ss_pred HHHHHHHh-CCCCCEEEECCCCChHHHHHHHHHHhcCc-------cCCCeEEEeCCCCC
Confidence 33334444 36778999999999999999988654221 35689999988653
No 361
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.29 E-value=0.0019 Score=78.33 Aligned_cols=90 Identities=8% Similarity=0.109 Sum_probs=53.5
Q ss_pred HHHHHHHhhccCcCC-ceeecCCCCCHHHHHHHHHHHHHcCCCCcc-----------cCCceEEEcccccccccchHHHH
Q 003038 215 VMYVIENLMSKRKRN-FVVVGECLASIEGVVRGVIDKIEKGDVPEA-----------LRDVKCLPLSISSFRHMNRVEVE 282 (854)
Q Consensus 215 i~~v~~~L~r~~k~n-~vLvGe~GvGKta~v~~la~~i~~~~vp~~-----------L~~~~~~~l~~~~l~~~~rge~E 282 (854)
++.+...+...+-.+ .|++||+|+|||++++.+|..+.....+.. -....++.++.+ +..| -
T Consensus 27 v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaa----sn~~--v 100 (725)
T PRK07133 27 VQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAA----SNNG--V 100 (725)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEecc----ccCC--H
Confidence 444555555444444 489999999999999999999875331110 011223333321 1111 1
Q ss_pred HHHHHHHHHHHhhh--CCCeEEEeCccccc
Q 003038 283 QRVEEIKNLVRSCL--GRGIVLNLGDLEWA 310 (854)
Q Consensus 283 ~rl~~l~~~~~~~~--~~~~ILfidel~~l 310 (854)
.-+++|++.+.... ++.-|++|||+|.+
T Consensus 101 d~IReLie~~~~~P~~g~~KV~IIDEa~~L 130 (725)
T PRK07133 101 DEIRELIENVKNLPTQSKYKIYIIDEVHML 130 (725)
T ss_pred HHHHHHHHHHHhchhcCCCEEEEEEChhhC
Confidence 22566666666431 44568999999999
No 362
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.28 E-value=0.00011 Score=74.66 Aligned_cols=75 Identities=13% Similarity=0.189 Sum_probs=46.6
Q ss_pred cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchH-HHHHHHHHHHHHHHhhhCCCeEEE
Q 003038 225 KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRV-EVEQRVEEIKNLVRSCLGRGIVLN 303 (854)
Q Consensus 225 ~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rg-e~E~rl~~l~~~~~~~~~~~~ILf 303 (854)
+.+.|++|+|+||+|||.++.+++..+.+ +|..++-++...|....+. ....+..++++.+... -+|+
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~-------~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~----dlLi 113 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIR-------KGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRV----DLLI 113 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHH-------TT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTS----SCEE
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhcc-------CCcceeEeecCceeccccccccccchhhhcCccccc----cEec
Confidence 36789999999999999999999987765 3455666666666543110 0111233344555543 4799
Q ss_pred eCccccc
Q 003038 304 LGDLEWA 310 (854)
Q Consensus 304 idel~~l 310 (854)
|||+-..
T Consensus 114 lDDlG~~ 120 (178)
T PF01695_consen 114 LDDLGYE 120 (178)
T ss_dssp EETCTSS
T ss_pred cccccee
Confidence 9999443
No 363
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.28 E-value=0.0022 Score=76.07 Aligned_cols=94 Identities=16% Similarity=0.137 Sum_probs=54.1
Q ss_pred cHHHHH-HHHHHhhccCcCCc-eeecCCCCCHHHHHHHHHHHHHcCCC----Ccc----------cCCceEEEccccccc
Q 003038 211 RNEDVM-YVIENLMSKRKRNF-VVVGECLASIEGVVRGVIDKIEKGDV----PEA----------LRDVKCLPLSISSFR 274 (854)
Q Consensus 211 r~~ei~-~v~~~L~r~~k~n~-vLvGe~GvGKta~v~~la~~i~~~~v----p~~----------L~~~~~~~l~~~~l~ 274 (854)
..+.+. .+...+..++-.+. +|+||||+|||++++.+|..+....- |-. -....++.++.++
T Consensus 20 Gq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~-- 97 (527)
T PRK14969 20 GQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAAS-- 97 (527)
T ss_pred CcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccc--
Confidence 344444 44444444444554 89999999999999999988754211 100 0111344444321
Q ss_pred ccchHHHHHHHHHHHHHHHhhh--CCCeEEEeCccccc
Q 003038 275 HMNRVEVEQRVEEIKNLVRSCL--GRGIVLNLGDLEWA 310 (854)
Q Consensus 275 ~~~rge~E~rl~~l~~~~~~~~--~~~~ILfidel~~l 310 (854)
..+ -..++++++.+.... ++.-|++|||+|.+
T Consensus 98 --~~~--vd~ir~l~~~~~~~p~~~~~kVvIIDEad~l 131 (527)
T PRK14969 98 --NTQ--VDAMRELLDNAQYAPTRGRFKVYIIDEVHML 131 (527)
T ss_pred --cCC--HHHHHHHHHHHhhCcccCCceEEEEcCcccC
Confidence 111 123556666654321 34569999999999
No 364
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.27 E-value=0.00088 Score=79.62 Aligned_cols=86 Identities=14% Similarity=0.238 Sum_probs=54.8
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhC--CCCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEE
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFG--SHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVF 736 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg--~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~Vi 736 (854)
+++|+|++|+|||.|+.+++..+.. ....++++.+.+|. .... ..+.. +-.+.+.+.++. ..||
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~-------~el~-~al~~----~~~~~f~~~y~~--~DLL 381 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFT-------NEFI-NSIRD----GKGDSFRRRYRE--MDIL 381 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH-------HHHH-HHHHh----ccHHHHHHHhhc--CCEE
Confidence 5899999999999999999998753 23566777776654 1111 00000 111223333333 5899
Q ss_pred EEecCCCCC--HHHHHHHHHhhhc
Q 003038 737 LIEDVEQAD--YCSQKGFKRAIES 758 (854)
Q Consensus 737 liDEieka~--~~v~~~Ll~~le~ 758 (854)
+||||+... ...+..|+.+|+.
T Consensus 382 lIDDIq~l~gke~tqeeLF~l~N~ 405 (617)
T PRK14086 382 LVDDIQFLEDKESTQEEFFHTFNT 405 (617)
T ss_pred EEehhccccCCHHHHHHHHHHHHH
Confidence 999999874 3446667776664
No 365
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.24 E-value=0.00075 Score=78.49 Aligned_cols=89 Identities=17% Similarity=0.218 Sum_probs=55.9
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhC--CCCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEE
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFG--SHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRV 735 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg--~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~V 735 (854)
.+++|+|++|+|||.|+++++..+.. ....++++.+.+|. .... .. +.. ..+..+.+.+.++ ...|
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~-------~~~~-~~-l~~-~~~~~~~~~~~~~--~~dv 209 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFA-------RKAV-DI-LQK-THKEIEQFKNEIC--QNDV 209 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH-------HHHH-HH-HHH-hhhHHHHHHHHhc--cCCE
Confidence 36899999999999999999997752 34566777766554 1110 00 000 0011122333333 3569
Q ss_pred EEEecCCCCC--HHHHHHHHHhhhc
Q 003038 736 FLIEDVEQAD--YCSQKGFKRAIES 758 (854)
Q Consensus 736 iliDEieka~--~~v~~~Ll~~le~ 758 (854)
++||||+... ...+..|...|..
T Consensus 210 LiIDDiq~l~~k~~~~e~lf~l~N~ 234 (450)
T PRK14087 210 LIIDDVQFLSYKEKTNEIFFTIFNN 234 (450)
T ss_pred EEEeccccccCCHHHHHHHHHHHHH
Confidence 9999999876 6677778777764
No 366
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00098 Score=69.98 Aligned_cols=134 Identities=10% Similarity=0.148 Sum_probs=76.8
Q ss_pred cccccHHHHHHHHHHHHHh--------hcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEE
Q 003038 619 KVPWQKDTVYDIANTVLKC--------RSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVS 690 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~--------rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~ 690 (854)
.|-|-+.-|.++.++|..- ..|+ +|+--+|++||||+|||.|||+-|..- ..-|+.
T Consensus 172 DiGGldkQIqELvEAiVLpmth~ekF~~lgi-------------~pPKGvLmYGPPGTGKTlmARAcAaqT---~aTFLK 235 (424)
T KOG0652|consen 172 DIGGLDKQIQELVEAIVLPMTHKEKFENLGI-------------RPPKGVLMYGPPGTGKTLMARACAAQT---NATFLK 235 (424)
T ss_pred ccccHHHHHHHHHHHhccccccHHHHHhcCC-------------CCCCceEeeCCCCCcHHHHHHHHHHhc---cchHHH
Confidence 3566666667777776421 2333 333346889999999999999988643 222332
Q ss_pred EccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEecCCCC-----------CHHHHHHHHHhhhc-
Q 003038 691 IALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQA-----------DYCSQKGFKRAIES- 758 (854)
Q Consensus 691 id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliDEieka-----------~~~v~~~Ll~~le~- 758 (854)
+..... +.-.| +.|.-....-+...+++..+||||||+|-. +++||...+..+..
T Consensus 236 LAgPQL------------VQMfI-GdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQL 302 (424)
T KOG0652|consen 236 LAGPQL------------VQMFI-GDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQL 302 (424)
T ss_pred hcchHH------------Hhhhh-cchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhh
Confidence 222111 11111 111111111222334566699999999843 67899988888853
Q ss_pred -CeEecCCCceeecCCeEEEEecCCCCCCCCC
Q 003038 759 -GRIVTSSGDEVSLGDAIVILSCESFSSRSRA 789 (854)
Q Consensus 759 -G~l~d~~G~~v~~~~aIiIlTsn~f~~~s~~ 789 (854)
|.-.+ .+.-+|..+|..|....+
T Consensus 303 DGFss~--------~~vKviAATNRvDiLDPA 326 (424)
T KOG0652|consen 303 DGFSSD--------DRVKVIAATNRVDILDPA 326 (424)
T ss_pred cCCCCc--------cceEEEeecccccccCHH
Confidence 32221 234477788877766555
No 367
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.23 E-value=0.0025 Score=76.51 Aligned_cols=92 Identities=18% Similarity=0.138 Sum_probs=54.7
Q ss_pred HHHHHHHHHhhccCcCCc-eeecCCCCCHHHHHHHHHHHHHcCCC---------C----------cccCCceEEEccccc
Q 003038 213 EDVMYVIENLMSKRKRNF-VVVGECLASIEGVVRGVIDKIEKGDV---------P----------EALRDVKCLPLSISS 272 (854)
Q Consensus 213 ~ei~~v~~~L~r~~k~n~-vLvGe~GvGKta~v~~la~~i~~~~v---------p----------~~L~~~~~~~l~~~~ 272 (854)
.-++.+...+..++-.+. +|+|++|+|||++++.+|+.+....- | ..-....++.++.++
T Consensus 23 ~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaas 102 (618)
T PRK14951 23 HVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAAS 102 (618)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCccc
Confidence 344555555665555565 89999999999999999998875210 1 000112345554332
Q ss_pred ccccchHHHHHHHHHHHHHHHhhh--CCCeEEEeCccccc
Q 003038 273 FRHMNRVEVEQRVEEIKNLVRSCL--GRGIVLNLGDLEWA 310 (854)
Q Consensus 273 l~~~~rge~E~rl~~l~~~~~~~~--~~~~ILfidel~~l 310 (854)
- +| + ..++++++.+.... ++.-|++|||+|.+
T Consensus 103 ~----~~-V-d~iReli~~~~~~p~~g~~KV~IIDEvh~L 136 (618)
T PRK14951 103 N----RG-V-DEVQQLLEQAVYKPVQGRFKVFMIDEVHML 136 (618)
T ss_pred c----cC-H-HHHHHHHHHHHhCcccCCceEEEEEChhhC
Confidence 1 11 1 12455555544321 34568999999999
No 368
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.22 E-value=0.00053 Score=77.56 Aligned_cols=131 Identities=14% Similarity=0.120 Sum_probs=82.9
Q ss_pred cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccccccccc---------chHHHHHHH---HHHHHHH
Q 003038 225 KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHM---------NRVEVEQRV---EEIKNLV 292 (854)
Q Consensus 225 ~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~---------~rge~E~rl---~~l~~~~ 292 (854)
....++++.||+|+||+-+++.+- .+.... .+..|++++++.+-.. -+|-|--+. ..+++.+
T Consensus 99 p~~~~vLi~GetGtGKel~A~~iH-~~s~r~-----~~~PFI~~NCa~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A 172 (403)
T COG1221 99 PSGLPVLIIGETGTGKELFARLIH-ALSARR-----AEAPFIAFNCAAYSENLQEAELFGHEKGAFTGAQGGKAGLFEQA 172 (403)
T ss_pred CCCCcEEEecCCCccHHHHHHHHH-Hhhhcc-----cCCCEEEEEHHHhCcCHHHHHHhccccceeecccCCcCchheec
Confidence 578899999999999999999887 444331 4678999999766431 111111111 1233333
Q ss_pred HhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhc-cc--C--CC----CceEEEEEecCHHHHHHhh
Q 003038 293 RSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLV-CG--I--GE----NARFWLMGIATFQSYMRCK 362 (854)
Q Consensus 293 ~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll-~~--~--~g----~g~l~lIgatT~~ey~k~~ 362 (854)
. |=+||+||||.+ -.+. .-+-++| .. . ++ ...+++|+|||..-=...+
T Consensus 173 ~-----GGtLfLDEI~~LP~~~Q-----------------~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~ 230 (403)
T COG1221 173 N-----GGTLFLDEIHRLPPEGQ-----------------EKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVL 230 (403)
T ss_pred C-----CCEEehhhhhhCCHhHH-----------------HHHHHHHHcCceEecCCCCCcCCCceeeeccccCHHHHHH
Confidence 2 337999999999 4332 1233344 11 0 11 1369999999987777766
Q ss_pred ccCCchhhhhccCCCCCCCchHHH
Q 003038 363 SGHPSLETLWSLHPLTIPAGSLSL 386 (854)
Q Consensus 363 ~~~pale~~~~~~~v~i~~~sl~~ 386 (854)
.+ .-|.+ |+.+++|.=|+|..
T Consensus 231 ~g-~dl~~--rl~~~~I~LPpLrE 251 (403)
T COG1221 231 AG-ADLTR--RLNILTITLPPLRE 251 (403)
T ss_pred hh-cchhh--hhcCceecCCChhh
Confidence 66 55666 67777777666654
No 369
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.20 E-value=0.002 Score=71.85 Aligned_cols=56 Identities=11% Similarity=0.124 Sum_probs=37.9
Q ss_pred cHHHHHHHHHHhhc--cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccc
Q 003038 211 RNEDVMYVIENLMS--KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSF 273 (854)
Q Consensus 211 r~~ei~~v~~~L~r--~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l 273 (854)
+...++++++-+.+ +...+++|+||+|+||+.+|+.+-..-. -.+..|+.+|++.+
T Consensus 11 ~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~-------r~~~pfv~v~c~~~ 68 (326)
T PRK11608 11 EANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSS-------RWQGPFISLNCAAL 68 (326)
T ss_pred CCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCC-------ccCCCeEEEeCCCC
Confidence 33444444444332 3566799999999999999998864311 13568999998876
No 370
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.20 E-value=0.0062 Score=69.25 Aligned_cols=142 Identities=15% Similarity=0.043 Sum_probs=85.2
Q ss_pred hhhhhhhhhhHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHH
Q 003038 596 EYVHKFKELNSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAK 675 (854)
Q Consensus 596 ~~~~~~~~~~~e~l~~L~~~L~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr 675 (854)
+.+..|+.+|--.+..-.--++-.-......+..++..+-.... .-.+++.||+|+|||.+|.
T Consensus 165 ~~R~~FT~dEWid~LlrSiG~~P~~~~~r~k~~~L~rl~~fve~-----------------~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 165 EGRKEFTLEEWIDVLIRSIGYEPEGFEARQKLLLLARLLPLVEP-----------------NYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred HHHhhcCHHHHHHHHHHhcCCCcccCChHHHHHHHHhhHHHHhc-----------------CCcEEEECCCCCCHHHHHH
Confidence 44577876655444332223333344556666666666444321 2478999999999999999
Q ss_pred HHHHH-HhCCCCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEecCCCC----CHHHHH
Q 003038 676 ELARL-VFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQA----DYCSQK 750 (854)
Q Consensus 676 ~LA~~-lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliDEieka----~~~v~~ 750 (854)
+|+.. ..-+. .|. +...|+. .-..+.... -..+.+|+|||+-.. +.+...
T Consensus 228 ~l~~~~a~~sG---------~f~----------T~a~Lf~----~L~~~~lg~--v~~~DlLI~DEvgylp~~~~~~~v~ 282 (449)
T TIGR02688 228 NLSPYVILISG---------GTI----------TVAKLFY----NISTRQIGL--VGRWDVVAFDEVATLKFAKPKELIG 282 (449)
T ss_pred HHhHHHHHHcC---------CcC----------cHHHHHH----HHHHHHHhh--hccCCEEEEEcCCCCcCCchHHHHH
Confidence 99876 22111 111 1111110 000011111 134689999999984 345778
Q ss_pred HHHHhhhcCeEecCCCceeecCCeEEEEecC
Q 003038 751 GFKRAIESGRIVTSSGDEVSLGDAIVILSCE 781 (854)
Q Consensus 751 ~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn 781 (854)
.++..|++|.++- |...--.+|=+||.-|
T Consensus 283 imK~yMesg~fsR--G~~~~~a~as~vfvGN 311 (449)
T TIGR02688 283 ILKNYMESGSFTR--GDETKSSDASFVFLGN 311 (449)
T ss_pred HHHHHHHhCceec--cceeeeeeeEEEEEcc
Confidence 9999999999994 5455557888888666
No 371
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.19 E-value=0.0026 Score=65.80 Aligned_cols=97 Identities=15% Similarity=0.247 Sum_probs=60.9
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCC-CCceEEEccc-cccCcCCCcccccccc-ccCCCCCCchHHHHHHHHHcCCCE
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGS-HNNFVSIALS-SFSSTRADSTEDSRNK-RSRDEQSCSYIERFAEAVSNNPHR 734 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~-~~~~i~id~s-~~~~~~~~s~e~~~~~-rl~~~~g~g~~e~L~eav~~~p~~ 734 (854)
|.++|.||+|+|||++.++|+..+... ...++.+.-. +|.... ....+. +-++.....|.+.+..+++.+| .
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~----~~~~i~q~~vg~~~~~~~~~i~~aLr~~p-d 76 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHES----KRSLINQREVGLDTLSFENALKAALRQDP-D 76 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccC----ccceeeecccCCCccCHHHHHHHHhcCCc-C
Confidence 689999999999999999999887432 2344444322 222000 000000 0011112256667888888877 6
Q ss_pred EEEEecCCCCCHHHHHHHHHhhhcCeE
Q 003038 735 VFLIEDVEQADYCSQKGFKRAIESGRI 761 (854)
Q Consensus 735 ViliDEieka~~~v~~~Ll~~le~G~l 761 (854)
+|++||+- +++....++++...|..
T Consensus 77 ~ii~gEir--d~e~~~~~l~~a~~G~~ 101 (198)
T cd01131 77 VILVGEMR--DLETIRLALTAAETGHL 101 (198)
T ss_pred EEEEcCCC--CHHHHHHHHHHHHcCCE
Confidence 99999995 77777887888877643
No 372
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0019 Score=73.78 Aligned_cols=119 Identities=7% Similarity=0.097 Sum_probs=72.1
Q ss_pred CceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEc-ccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeCcc
Q 003038 229 NFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPL-SISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLGDL 307 (854)
Q Consensus 229 n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l-~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfidel 307 (854)
.++|.||||+||||+|-.+|.. .+..|+.+ +...++...--.==.-++.+|+.+.++ .-.|+.||||
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~----------S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS--~lsiivvDdi 607 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALS----------SDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKS--PLSIIVVDDI 607 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhh----------cCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcC--cceEEEEcch
Confidence 5799999999999999888754 23344443 333444322111124567778887775 5678999999
Q ss_pred ccc-cccccccccccccchhhhHHHHHHHh-hcc--cCCCCceEEEEEecCHHHHHHhhccCCch
Q 003038 308 EWA-EFRASSSEQVRGYYCSIEHIIMEIGK-LVC--GIGENARFWLMGIATFQSYMRCKSGHPSL 368 (854)
Q Consensus 308 ~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~-ll~--~~~g~g~l~lIgatT~~ey~k~~~~~pal 368 (854)
..| +...-+ .. |+ ..+..+-. ||| |-.|+ ++.++|+|+.-++++-...-..|
T Consensus 608 ErLiD~vpIG-PR----fS---N~vlQaL~VllK~~ppkg~-kLli~~TTS~~~vL~~m~i~~~F 663 (744)
T KOG0741|consen 608 ERLLDYVPIG-PR----FS---NLVLQALLVLLKKQPPKGR-KLLIFGTTSRREVLQEMGILDCF 663 (744)
T ss_pred hhhhcccccC-ch----hh---HHHHHHHHHHhccCCCCCc-eEEEEecccHHHHHHHcCHHHhh
Confidence 998 654321 01 11 13333332 333 22344 79999999999988754433333
No 373
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.18 E-value=0.0026 Score=75.93 Aligned_cols=94 Identities=6% Similarity=0.081 Sum_probs=58.1
Q ss_pred cHHHHHHHHHHhhccCcCC-ceeecCCCCCHHHHHHHHHHHHHcCCCCcc--------------cCCceEEEcccccccc
Q 003038 211 RNEDVMYVIENLMSKRKRN-FVVVGECLASIEGVVRGVIDKIEKGDVPEA--------------LRDVKCLPLSISSFRH 275 (854)
Q Consensus 211 r~~ei~~v~~~L~r~~k~n-~vLvGe~GvGKta~v~~la~~i~~~~vp~~--------------L~~~~~~~l~~~~l~~ 275 (854)
.+.-++.+...+...+-.+ .+|+||+|+|||++++.+|..+...+-+.. .....|+.++.++..
T Consensus 21 q~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaas~~- 99 (559)
T PRK05563 21 QEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAASNN- 99 (559)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeeccccC-
Confidence 3444455555555444445 577999999999999999998875432211 123345555543211
Q ss_pred cchHHHHHHHHHHHHHHHhhh--CCCeEEEeCccccc
Q 003038 276 MNRVEVEQRVEEIKNLVRSCL--GRGIVLNLGDLEWA 310 (854)
Q Consensus 276 ~~rge~E~rl~~l~~~~~~~~--~~~~ILfidel~~l 310 (854)
| -..++++++.+.... ++.-|++|||+|.+
T Consensus 100 ---~--vd~ir~i~~~v~~~p~~~~~kViIIDE~~~L 131 (559)
T PRK05563 100 ---G--VDEIRDIRDKVKYAPSEAKYKVYIIDEVHML 131 (559)
T ss_pred ---C--HHHHHHHHHHHhhCcccCCeEEEEEECcccC
Confidence 1 124556666665321 45678999999999
No 374
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.16 E-value=0.00077 Score=70.92 Aligned_cols=146 Identities=14% Similarity=0.147 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhhccCc---CCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHH-HHHHH
Q 003038 212 NEDVMYVIENLMSKRK---RNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVE-QRVEE 287 (854)
Q Consensus 212 ~~ei~~v~~~L~r~~k---~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E-~rl~~ 287 (854)
.+.....+..++.... +.++|+|++|+|||.+..+++..+.+.. .+.+++.++...|...+...+. ..+.+
T Consensus 16 N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~-----~~~~v~y~~~~~f~~~~~~~~~~~~~~~ 90 (219)
T PF00308_consen 16 NELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQH-----PGKRVVYLSAEEFIREFADALRDGEIEE 90 (219)
T ss_dssp THHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHC-----TTS-EEEEEHHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhcc-----ccccceeecHHHHHHHHHHHHHcccchh
Confidence 3445555555554422 3468999999999999999999886521 3568888887766553222211 23444
Q ss_pred HHHHHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhccc--CCCCceEEEEEecCHHHHHHhhcc
Q 003038 288 IKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG--IGENARFWLMGIATFQSYMRCKSG 364 (854)
Q Consensus 288 l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~--~~g~g~l~lIgatT~~ey~k~~~~ 364 (854)
+++.+++ --+|+|||||.+ +... ....+-.++.. ..|. .+.+-+-..+.+... .
T Consensus 91 ~~~~~~~----~DlL~iDDi~~l~~~~~---------------~q~~lf~l~n~~~~~~k-~li~ts~~~P~~l~~---~ 147 (219)
T PF00308_consen 91 FKDRLRS----ADLLIIDDIQFLAGKQR---------------TQEELFHLFNRLIESGK-QLILTSDRPPSELSG---L 147 (219)
T ss_dssp HHHHHCT----SSEEEEETGGGGTTHHH---------------HHHHHHHHHHHHHHTTS-EEEEEESS-TTTTTT---S
T ss_pred hhhhhhc----CCEEEEecchhhcCchH---------------HHHHHHHHHHHHHhhCC-eEEEEeCCCCccccc---c
Confidence 5555554 358999999999 6432 11233344422 2332 344444456666542 4
Q ss_pred CCchhhh--hccCCCCCCCchHHH
Q 003038 365 HPSLETL--WSLHPLTIPAGSLSL 386 (854)
Q Consensus 365 ~pale~~--~~~~~v~i~~~sl~~ 386 (854)
.|-|.++ |++. +.|.+|+.+.
T Consensus 148 ~~~L~SRl~~Gl~-~~l~~pd~~~ 170 (219)
T PF00308_consen 148 LPDLRSRLSWGLV-VELQPPDDED 170 (219)
T ss_dssp -HHHHHHHHCSEE-EEE----HHH
T ss_pred ChhhhhhHhhcch-hhcCCCCHHH
Confidence 5667661 3322 5555555433
No 375
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.15 E-value=0.00053 Score=80.31 Aligned_cols=109 Identities=16% Similarity=0.283 Sum_probs=80.0
Q ss_pred ceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCchHH-HHH--------HH
Q 003038 657 ETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIE-RFA--------EA 727 (854)
Q Consensus 657 ~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e-~L~--------ea 727 (854)
...+++.|.||+||..+||++-+.-- -..+||-++|..+. +.+.-+.+. ||.. .++ ..
T Consensus 336 ~~pvll~GEtGtGKe~laraiH~~s~-~~gpfvAvNCaAip-------~~liesELF-----Gy~~GafTga~~kG~~g~ 402 (606)
T COG3284 336 DLPVLLQGETGTGKEVLARAIHQNSE-AAGPFVAVNCAAIP-------EALIESELF-----GYVAGAFTGARRKGYKGK 402 (606)
T ss_pred CCCeEecCCcchhHHHHHHHHHhccc-ccCCeEEEEeccch-------HHhhhHHHh-----ccCccccccchhcccccc
Confidence 34789999999999999999988664 67899999999887 333333333 2221 122 23
Q ss_pred HHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCC--ceeecCCeEEEEecC
Q 003038 728 VSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSG--DEVSLGDAIVILSCE 781 (854)
Q Consensus 728 v~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G--~~v~~~~aIiIlTsn 781 (854)
+...+..-+|+|||.-++-..|..||+++++|.++==.| .+||+ -||-+|+
T Consensus 403 ~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdi---rvi~ath 455 (606)
T COG3284 403 LEQADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDI---RVIAATH 455 (606)
T ss_pred ceecCCCccHHHHhhhchHHHHHHHHHHHhhCceeccCCcceeEEE---EEEeccC
Confidence 344556789999999999999999999999999995444 45554 4777664
No 376
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.14 E-value=0.00038 Score=67.60 Aligned_cols=99 Identities=13% Similarity=0.110 Sum_probs=59.7
Q ss_pred HHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHH
Q 003038 214 DVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVR 293 (854)
Q Consensus 214 ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~ 293 (854)
++++-++-++ +...+++|+||+|+||+.+|+.+...-.. ....++.++...+- .++++.+
T Consensus 9 ~l~~~l~~~a-~~~~pvli~GE~GtGK~~~A~~lh~~~~~-------~~~~~~~~~~~~~~-----------~~~l~~a- 68 (138)
T PF14532_consen 9 RLRRQLERLA-KSSSPVLITGEPGTGKSLLARALHRYSGR-------ANGPFIVIDCASLP-----------AELLEQA- 68 (138)
T ss_dssp HHHHHHHHHH-CSSS-EEEECCTTSSHHHHHHCCHHTTTT-------CCS-CCCCCHHCTC-----------HHHHHHC-
T ss_pred HHHHHHHHHh-CCCCcEEEEcCCCCCHHHHHHHHHhhcCc-------cCCCeEEechhhCc-----------HHHHHHc-
Confidence 3444455555 58889999999999999999988765222 12233444444322 2333333
Q ss_pred hhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhccc-CCCCceEEEEEecCH
Q 003038 294 SCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG-IGENARFWLMGIATF 355 (854)
Q Consensus 294 ~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~g~g~l~lIgatT~ 355 (854)
.+-.|||+||+.+ ... ...+..+|+. ... ++++|.+++.
T Consensus 69 ----~~gtL~l~~i~~L~~~~-----------------Q~~L~~~l~~~~~~--~~RlI~ss~~ 109 (138)
T PF14532_consen 69 ----KGGTLYLKNIDRLSPEA-----------------QRRLLDLLKRQERS--NVRLIASSSQ 109 (138)
T ss_dssp ----TTSEEEEECGCCS-HHH-----------------HHHHHHHHHHCTTT--TSEEEEEECC
T ss_pred ----CCCEEEECChHHCCHHH-----------------HHHHHHHHHhcCCC--CeEEEEEeCC
Confidence 2447999999999 432 2345566643 223 5788888764
No 377
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.14 E-value=0.00053 Score=80.23 Aligned_cols=51 Identities=18% Similarity=0.265 Sum_probs=44.7
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHH
Q 003038 619 KVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
.++|+++++..|.+.+.....|+..+ + ..++|+||+|+|||+||+.||+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~----------~--~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEK----------K--QILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCC----------C--ceEEEecCCCCCchHHHHHHHHHH
Confidence 47999999999999998888888553 2 389999999999999999999876
No 378
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.13 E-value=0.00057 Score=75.46 Aligned_cols=74 Identities=16% Similarity=0.249 Sum_probs=49.4
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHH-HHHHHHHHHHHHhhhCCCeEEEe
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEV-EQRVEEIKNLVRSCLGRGIVLNL 304 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~-E~rl~~l~~~~~~~~~~~~ILfi 304 (854)
..++++|+|++|||||.++.++|..+.+ +|..+.-+.+..|....+.-+ ...+.+.++.+++ --||+|
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~-------~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~----~dlLiI 223 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAK-------KGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVKE----APVLML 223 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH-------cCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcC----CCEEEE
Confidence 4578999999999999999999999865 345555555555544322111 1123445555554 358999
Q ss_pred Cccccc
Q 003038 305 GDLEWA 310 (854)
Q Consensus 305 del~~l 310 (854)
|||..-
T Consensus 224 DDiG~e 229 (306)
T PRK08939 224 DDIGAE 229 (306)
T ss_pred ecCCCc
Confidence 999544
No 379
>PRK09087 hypothetical protein; Validated
Probab=97.13 E-value=0.0018 Score=68.51 Aligned_cols=125 Identities=13% Similarity=0.057 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHH
Q 003038 212 NEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNL 291 (854)
Q Consensus 212 ~~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~ 291 (854)
+..+..+++-+.....+.++|+|++|+|||.++++++... ++.+++.. .+.. +++..
T Consensus 29 N~~a~~~l~~~~~~~~~~l~l~G~~GsGKThLl~~~~~~~----------~~~~i~~~--~~~~-----------~~~~~ 85 (226)
T PRK09087 29 NRAAVSLVDHWPNWPSPVVVLAGPVGSGKTHLASIWREKS----------DALLIHPN--EIGS-----------DAANA 85 (226)
T ss_pred hHHHHHHHHhcccCCCCeEEEECCCCCCHHHHHHHHHHhc----------CCEEecHH--Hcch-----------HHHHh
Confidence 3444444443332222237999999999999999887542 23343332 1111 12222
Q ss_pred HHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchhh
Q 003038 292 VRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLET 370 (854)
Q Consensus 292 ~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale~ 370 (854)
+.. -+|.|||++.+ .... ..-.+-|.+. ..| ...+|++++...|... ..|.|..
T Consensus 86 ~~~-----~~l~iDDi~~~~~~~~---------------~lf~l~n~~~-~~g--~~ilits~~~p~~~~~--~~~dL~S 140 (226)
T PRK09087 86 AAE-----GPVLIEDIDAGGFDET---------------GLFHLINSVR-QAG--TSLLMTSRLWPSSWNV--KLPDLKS 140 (226)
T ss_pred hhc-----CeEEEECCCCCCCCHH---------------HHHHHHHHHH-hCC--CeEEEECCCChHHhcc--ccccHHH
Confidence 221 26888999987 3211 2223333332 223 5888888887666543 4688988
Q ss_pred hhcc---CCCCCCCchHHH
Q 003038 371 LWSL---HPLTIPAGSLSL 386 (854)
Q Consensus 371 ~~~~---~~v~i~~~sl~~ 386 (854)
|| ..+.|..++.+.
T Consensus 141 --Rl~~gl~~~l~~pd~e~ 157 (226)
T PRK09087 141 --RLKAATVVEIGEPDDAL 157 (226)
T ss_pred --HHhCCceeecCCCCHHH
Confidence 77 777777776544
No 380
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.12 E-value=0.00091 Score=75.28 Aligned_cols=93 Identities=14% Similarity=0.209 Sum_probs=57.1
Q ss_pred HHHHHHhhc-cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccccc---------------cccc-ch
Q 003038 216 MYVIENLMS-KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISS---------------FRHM-NR 278 (854)
Q Consensus 216 ~~v~~~L~r-~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~---------------l~~~-~r 278 (854)
.|+|+.|.- .+....+|+||||||||++++.++..+.... + ++.+|-+-... +++. +-
T Consensus 157 ~rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~nh-F----Dv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d 231 (416)
T PRK09376 157 TRIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTNH-P----EVHLIVLLIDERPEEVTDMQRSVKGEVVASTFD 231 (416)
T ss_pred eeeeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhhc-C----CeEEEEEEeCCchhHHHHHHHHhcCcEEEECCC
Confidence 356666542 2667789999999999999999999887651 1 23333221211 1221 22
Q ss_pred HHHHHHHH---HHHHHHHhhh--CCCeEEEeCccccc-ccc
Q 003038 279 VEVEQRVE---EIKNLVRSCL--GRGIVLNLGDLEWA-EFR 313 (854)
Q Consensus 279 ge~E~rl~---~l~~~~~~~~--~~~~ILfidel~~l-~~~ 313 (854)
+..+.+++ .++..++... |..|||||||||.+ .+.
T Consensus 232 ~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR~arAq 272 (416)
T PRK09376 232 EPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAY 272 (416)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHHHHHHH
Confidence 33334444 3344433321 78999999999999 654
No 381
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.11 E-value=0.0011 Score=72.11 Aligned_cols=109 Identities=10% Similarity=0.156 Sum_probs=67.0
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCC-------CCCCchHHHHHHHHHcC
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRD-------EQSCSYIERFAEAVSNN 731 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~-------~~g~g~~e~L~eav~~~ 731 (854)
.+||+||+|+|||.+++.+-+.+-........+.++.++.+ ..+.+.+. +..||- ..+
T Consensus 35 pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts-------~~~q~~ie~~l~k~~~~~~gP--------~~~ 99 (272)
T PF12775_consen 35 PVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTS-------NQLQKIIESKLEKRRGRVYGP--------PGG 99 (272)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHH-------HHHHHCCCTTECECTTEEEEE--------ESS
T ss_pred cEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCH-------HHHHHHHhhcEEcCCCCCCCC--------CCC
Confidence 57999999999999998755544222223456777765521 11111110 000110 123
Q ss_pred CCEEEEEecCCCCCHH------HHHHHHHhhhcCeEecCCC-ceeecCCeEEEEecCC
Q 003038 732 PHRVFLIEDVEQADYC------SQKGFKRAIESGRIVTSSG-DEVSLGDAIVILSCES 782 (854)
Q Consensus 732 p~~ViliDEieka~~~------v~~~Ll~~le~G~l~d~~G-~~v~~~~aIiIlTsn~ 782 (854)
...|+||||+.-..++ ....|.|.|+.|-+-|... .-..+.|+-||.+++.
T Consensus 100 k~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p 157 (272)
T PF12775_consen 100 KKLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNP 157 (272)
T ss_dssp SEEEEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESS
T ss_pred cEEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCC
Confidence 3569999999976543 5689999999988888543 4568899999988864
No 382
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.11 E-value=0.00035 Score=78.13 Aligned_cols=157 Identities=15% Similarity=0.189 Sum_probs=83.8
Q ss_pred HHHHHHhhcCcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCce
Q 003038 609 LTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNF 688 (854)
Q Consensus 609 l~~L~~~L~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~ 688 (854)
+..|-+.|--.|+|++.+...|.-.+. +|..+.... +...|...++||.|.||+||+.|.+.+++.. .+-
T Consensus 15 ~~~l~~s~aP~i~g~~~iK~aill~L~---~~~~~~~~~---~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~----pr~ 84 (331)
T PF00493_consen 15 FDRLANSIAPSIYGHEDIKKAILLQLF---GGVEKNDPD---GTRIRGNIHILLVGDPGTGKSQLLKYVAKLA----PRS 84 (331)
T ss_dssp HHCCHHHCSSTTTT-HHHHHHHCCCCT---T--SCCCCT----TEE--S--EEEECSCHHCHHHHHHCCCCT-----SSE
T ss_pred HHHHHHHhCCcCcCcHHHHHHHHHHHH---hcccccccc---ccccccccceeeccchhhhHHHHHHHHHhhC----Cce
Confidence 456677777889999876665543332 333321100 0112445699999999999999999776544 233
Q ss_pred EEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCC-Cc
Q 003038 689 VSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSS-GD 767 (854)
Q Consensus 689 i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~-G~ 767 (854)
++..+...+..+- . -.+.+-....+|.. + .+++-.....|++|||+||++.+.+..|+++||.|.++-.+ |-
T Consensus 85 v~~~g~~~s~~gL-t---a~~~~d~~~~~~~l-e--aGalvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi 157 (331)
T PF00493_consen 85 VYTSGKGSSAAGL-T---ASVSRDPVTGEWVL-E--AGALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGI 157 (331)
T ss_dssp EEEECCGSTCCCC-C---EEECCCGGTSSECE-E--E-HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSS
T ss_pred EEECCCCcccCCc-c---ceeccccccceeEE-e--CCchhcccCceeeecccccccchHHHHHHHHHHcCeeccchhhh
Confidence 4444332221000 0 01111000111100 0 12333345689999999999999999999999999999865 44
Q ss_pred eeec-CCeEEEEecCC
Q 003038 768 EVSL-GDAIVILSCES 782 (854)
Q Consensus 768 ~v~~-~~aIiIlTsn~ 782 (854)
...+ .++-|+.++|.
T Consensus 158 ~~~l~ar~svlaa~NP 173 (331)
T PF00493_consen 158 VTTLNARCSVLAAANP 173 (331)
T ss_dssp EEEEE---EEEEEE--
T ss_pred cccccchhhhHHHHhh
Confidence 4454 36777778874
No 383
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.10 E-value=0.004 Score=73.42 Aligned_cols=94 Identities=17% Similarity=0.144 Sum_probs=54.1
Q ss_pred cHHHHHHH-HHHhhccCcCCc-eeecCCCCCHHHHHHHHHHHHHc-CCCCc------------ccCCceEEEcccccccc
Q 003038 211 RNEDVMYV-IENLMSKRKRNF-VVVGECLASIEGVVRGVIDKIEK-GDVPE------------ALRDVKCLPLSISSFRH 275 (854)
Q Consensus 211 r~~ei~~v-~~~L~r~~k~n~-vLvGe~GvGKta~v~~la~~i~~-~~vp~------------~L~~~~~~~l~~~~l~~ 275 (854)
..+.+... ...+.+++-.+. +|+||||+|||++++.+|..+.. +..+. ......++.++...-.
T Consensus 18 Gq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~~~- 96 (504)
T PRK14963 18 GQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAASNN- 96 (504)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecccccC-
Confidence 34454444 444444444444 99999999999999999999864 21110 0122345555543111
Q ss_pred cchHHHHHHHHHHHHHHHhhh--CCCeEEEeCccccc
Q 003038 276 MNRVEVEQRVEEIKNLVRSCL--GRGIVLNLGDLEWA 310 (854)
Q Consensus 276 ~~rge~E~rl~~l~~~~~~~~--~~~~ILfidel~~l 310 (854)
.. ..++++.+.+.... +..-|++|||+|.+
T Consensus 97 -~v----d~iR~l~~~~~~~p~~~~~kVVIIDEad~l 128 (504)
T PRK14963 97 -SV----EDVRDLREKVLLAPLRGGRKVYILDEAHMM 128 (504)
T ss_pred -CH----HHHHHHHHHHhhccccCCCeEEEEECcccc
Confidence 11 12444545444321 45678999999888
No 384
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.10 E-value=0.0046 Score=73.61 Aligned_cols=94 Identities=9% Similarity=0.047 Sum_probs=55.7
Q ss_pred cHHHHHHHHHHhhccCcCC-ceeecCCCCCHHHHHHHHHHHHHcCCC----C----------cccCCceEEEcccccccc
Q 003038 211 RNEDVMYVIENLMSKRKRN-FVVVGECLASIEGVVRGVIDKIEKGDV----P----------EALRDVKCLPLSISSFRH 275 (854)
Q Consensus 211 r~~ei~~v~~~L~r~~k~n-~vLvGe~GvGKta~v~~la~~i~~~~v----p----------~~L~~~~~~~l~~~~l~~ 275 (854)
.+.-++.+...+.+.+-.+ .+++||+|+|||++|+.+|+.+....- | .......++.++.++-.
T Consensus 21 Qe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas~i- 99 (605)
T PRK05896 21 QELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAASNN- 99 (605)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEecccccc-
Confidence 4444556666665544343 678999999999999999999864321 1 00112345555543211
Q ss_pred cchHHHHHHHHHHHHHHHhhh--CCCeEEEeCccccc
Q 003038 276 MNRVEVEQRVEEIKNLVRSCL--GRGIVLNLGDLEWA 310 (854)
Q Consensus 276 ~~rge~E~rl~~l~~~~~~~~--~~~~ILfidel~~l 310 (854)
..++ ++++++.+.... ++.=|++|||+|.+
T Consensus 100 -gVd~----IReIi~~~~~~P~~~~~KVIIIDEad~L 131 (605)
T PRK05896 100 -GVDE----IRNIIDNINYLPTTFKYKVYIIDEAHML 131 (605)
T ss_pred -CHHH----HHHHHHHHHhchhhCCcEEEEEechHhC
Confidence 2222 445555554321 23447999999999
No 385
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.00074 Score=76.68 Aligned_cols=95 Identities=17% Similarity=0.194 Sum_probs=61.5
Q ss_pred CcccccHHHHHHHHHHHHHh------hcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEE
Q 003038 618 KKVPWQKDTVYDIANTVLKC------RSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSI 691 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~------rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~i 691 (854)
.-+.|.+.+...+-+.+..- -.|++ .|...+|+.||+|+|||.|++++|-.. ...|..|
T Consensus 153 ~di~gl~~~k~~l~e~vi~p~lr~d~F~glr------------~p~rglLLfGPpgtGKtmL~~aiAsE~---~atff~i 217 (428)
T KOG0740|consen 153 DDIAGLEDAKQSLKEAVILPLLRPDLFLGLR------------EPVRGLLLFGPPGTGKTMLAKAIATES---GATFFNI 217 (428)
T ss_pred cCCcchhhHHHHhhhhhhhcccchHhhhccc------------cccchhheecCCCCchHHHHHHHHhhh---cceEeec
Confidence 44677777777777776542 12332 244578888999999999999999876 3445544
Q ss_pred ccccccCcCCCccccccccccCCCCCCchHH----HHHHHHHcCCCEEEEEecCCCC
Q 003038 692 ALSSFSSTRADSTEDSRNKRSRDEQSCSYIE----RFAEAVSNNPHRVFLIEDVEQA 744 (854)
Q Consensus 692 d~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e----~L~eav~~~p~~ViliDEieka 744 (854)
..+... .++ + |-.+ .|+...+...++||||||||+.
T Consensus 218 SassLt-------sK~--------~--Ge~eK~vralf~vAr~~qPsvifidEidsl 257 (428)
T KOG0740|consen 218 SASSLT-------SKY--------V--GESEKLVRALFKVARSLQPSVIFIDEIDSL 257 (428)
T ss_pred cHHHhh-------hhc--------c--ChHHHHHHHHHHHHHhcCCeEEEechhHHH
Confidence 444333 111 1 3333 3455556777899999999963
No 386
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.08 E-value=0.0037 Score=75.46 Aligned_cols=94 Identities=11% Similarity=0.104 Sum_probs=54.8
Q ss_pred cHHH-HHHHHHHhhccC-cCCceeecCCCCCHHHHHHHHHHHHHcCCC--C---ccc-----------CCceEEEccccc
Q 003038 211 RNED-VMYVIENLMSKR-KRNFVVVGECLASIEGVVRGVIDKIEKGDV--P---EAL-----------RDVKCLPLSISS 272 (854)
Q Consensus 211 r~~e-i~~v~~~L~r~~-k~n~vLvGe~GvGKta~v~~la~~i~~~~v--p---~~L-----------~~~~~~~l~~~~ 272 (854)
..++ +..+...+..++ ....||+||+|+|||++++.+|+.+..... + ... ....++.++..
T Consensus 20 Gq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~- 98 (620)
T PRK14948 20 GQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAA- 98 (620)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEecc-
Confidence 3444 444444444332 246789999999999999999999865211 1 010 01123333221
Q ss_pred ccccchHHHHHHHHHHHHHHHhhh--CCCeEEEeCccccc
Q 003038 273 FRHMNRVEVEQRVEEIKNLVRSCL--GRGIVLNLGDLEWA 310 (854)
Q Consensus 273 l~~~~rge~E~rl~~l~~~~~~~~--~~~~ILfidel~~l 310 (854)
.+..-..++++++.+.... +..-|++|||+|.+
T Consensus 99 -----~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~L 133 (620)
T PRK14948 99 -----SNTGVDNIRELIERAQFAPVQARWKVYVIDECHML 133 (620)
T ss_pred -----ccCCHHHHHHHHHHHhhChhcCCceEEEEECcccc
Confidence 1111245667776665321 34568999999999
No 387
>PF05729 NACHT: NACHT domain
Probab=97.08 E-value=0.0023 Score=62.93 Aligned_cols=109 Identities=13% Similarity=0.163 Sum_probs=63.4
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCC------CceEEEccccccCcCCCccccccccccCC---CCCCchHH-HHHHHH
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSH------NNFVSIALSSFSSTRADSTEDSRNKRSRD---EQSCSYIE-RFAEAV 728 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~------~~~i~id~s~~~~~~~~s~e~~~~~rl~~---~~g~g~~e-~L~eav 728 (854)
.+++.|++|+|||.+++.++..+-... .-.+.+.+..+..... ...+..++. ....+... .+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~l~~~~~~~~~~~~~~~~~~~ 77 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNN----SRSLADLLFDQLPESIAPIEELLQELL 77 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccc----cchHHHHHHHhhccchhhhHHHHHHHH
Confidence 578999999999999999997764332 1233455554441100 011222221 11112222 345566
Q ss_pred HcCCCEEEEEecCCCCCHHHHH--------HHHHhhhcCeEecCCCceeecCCeEEEEecC
Q 003038 729 SNNPHRVFLIEDVEQADYCSQK--------GFKRAIESGRIVTSSGDEVSLGDAIVILSCE 781 (854)
Q Consensus 729 ~~~p~~ViliDEieka~~~v~~--------~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn 781 (854)
.+++.-+|+||.+|.+...... .|.+.+.. ..+.++-+|+||.
T Consensus 78 ~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~----------~~~~~~~liit~r 128 (166)
T PF05729_consen 78 EKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQ----------ALPPGVKLIITSR 128 (166)
T ss_pred HcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhh----------ccCCCCeEEEEEc
Confidence 7788889999999999875433 45555543 1234566777774
No 388
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.05 E-value=0.00088 Score=72.67 Aligned_cols=94 Identities=17% Similarity=0.236 Sum_probs=58.3
Q ss_pred cHHHHHHHHHHhhc--cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccc-c---cc----cc---c
Q 003038 211 RNEDVMYVIENLMS--KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSIS-S---FR----HM---N 277 (854)
Q Consensus 211 r~~ei~~v~~~L~r--~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~---l~----~~---~ 277 (854)
||.++++|.+.|.. +..+-+.|+|.+|+|||++|..++++.... ....++-.+.+.-. . +. .. .
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~---~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~ 77 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIK---NRFDGVIWVSLSKNPSLEQLLEQILRQLGEP 77 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHC---CCCTEEEEEEEES-SCCHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccc---ccccccccccccccccccccccccccccccc
Confidence 79999999999998 566678999999999999999999873321 12212222222211 0 10 00 1
Q ss_pred ------hHHHHHHHHHHHHHHHhhhCCCeEEEeCccccc
Q 003038 278 ------RVEVEQRVEEIKNLVRSCLGRGIVLNLGDLEWA 310 (854)
Q Consensus 278 ------rge~E~rl~~l~~~~~~~~~~~~ILfidel~~l 310 (854)
..+.+.....|.+.++ +++++|++|++...
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~L~---~~~~LlVlDdv~~~ 113 (287)
T PF00931_consen 78 DSSISDPKDIEELQDQLRELLK---DKRCLLVLDDVWDE 113 (287)
T ss_dssp -STSSCCSSHHHHHHHHHHHHC---CTSEEEEEEEE-SH
T ss_pred ccccccccccccccccchhhhc---cccceeeeeeeccc
Confidence 1234455555555554 35999999998544
No 389
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.04 E-value=0.0028 Score=75.48 Aligned_cols=76 Identities=9% Similarity=0.096 Sum_probs=52.0
Q ss_pred CCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHH-HHHHHHHHHHhhhCCCeEEEeCc
Q 003038 228 RNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQ-RVEEIKNLVRSCLGRGIVLNLGD 306 (854)
Q Consensus 228 ~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~-rl~~l~~~~~~~~~~~~ILfide 306 (854)
|.++|+|++|+|||.++.+++..+.+.. .+.+++.++...|...+...+.. .+..+.+..++ .-||+|||
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~-----~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~----~DLLlIDD 385 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLY-----PGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYRE----MDILLVDD 385 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhC-----CCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhc----CCEEEEeh
Confidence 4577889999999999999999876421 35678888877776543333222 23333333333 45899999
Q ss_pred cccc-cc
Q 003038 307 LEWA-EF 312 (854)
Q Consensus 307 l~~l-~~ 312 (854)
|+.+ +.
T Consensus 386 Iq~l~gk 392 (617)
T PRK14086 386 IQFLEDK 392 (617)
T ss_pred hccccCC
Confidence 9999 54
No 390
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=97.02 E-value=0.00094 Score=53.47 Aligned_cols=38 Identities=32% Similarity=0.678 Sum_probs=33.6
Q ss_pred ccCHHHHHHHhccCC--hHHHHHHHhCCCHHHHHHHHHHH
Q 003038 129 KIELEQLIISILDDP--SVSRVMREAGFSSTQVKSNVEQA 166 (854)
Q Consensus 129 ~I~~eHLLLALL~d~--~~~~iL~~~Gi~~~~l~~~v~~~ 166 (854)
+|+++|||+||++++ .+.++|+++|+++..++..+.+.
T Consensus 12 ~i~~eHlL~all~~~~~~~~~il~~~~id~~~l~~~i~~~ 51 (53)
T PF02861_consen 12 YISPEHLLLALLEDPDSIAARILKKLGIDPEQLKAAIEKA 51 (53)
T ss_dssp SE-HHHHHHHHHHHTTSHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhhhhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 599999999999975 78999999999999999998863
No 391
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.02 E-value=0.0034 Score=70.61 Aligned_cols=99 Identities=15% Similarity=0.245 Sum_probs=62.9
Q ss_pred cceeEEEecCCCchHHHHHHHHHHHHhCC-CCceEEEc-cccccCcCCCcccccccc-ccCCCCCCchHHHHHHHHHcCC
Q 003038 656 EETWLFFQGVDADAKEKIAKELARLVFGS-HNNFVSIA-LSSFSSTRADSTEDSRNK-RSRDEQSCSYIERFAEAVSNNP 732 (854)
Q Consensus 656 p~~~lLf~Gp~GvGKt~lAr~LA~~lfg~-~~~~i~id-~s~~~~~~~~s~e~~~~~-rl~~~~g~g~~e~L~eav~~~p 732 (854)
+.+.++|.||+|+|||++.++|.+.+-.. ...++.+. --++.... ....+. +-++.....|.+.+..++|.+|
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~----~~~~i~q~evg~~~~~~~~~l~~~lr~~p 196 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRN----KRSLINQREVGLDTLSFANALRAALREDP 196 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccC----ccceEEccccCCCCcCHHHHHHHhhccCC
Confidence 34789999999999999999999877422 34455543 22222000 000000 0011111256667788888877
Q ss_pred CEEEEEecCCCCCHHHHHHHHHhhhcCeE
Q 003038 733 HRVFLIEDVEQADYCSQKGFKRAIESGRI 761 (854)
Q Consensus 733 ~~ViliDEieka~~~v~~~Ll~~le~G~l 761 (854)
.||++||+- +++.....+++...|..
T Consensus 197 -d~i~vgEir--d~~~~~~~l~aa~tGh~ 222 (343)
T TIGR01420 197 -DVILIGEMR--DLETVELALTAAETGHL 222 (343)
T ss_pred -CEEEEeCCC--CHHHHHHHHHHHHcCCc
Confidence 789999997 88888888888877754
No 392
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.02 E-value=0.0051 Score=72.59 Aligned_cols=94 Identities=14% Similarity=0.098 Sum_probs=53.1
Q ss_pred cHHHHHH-HHHHhhccCcCCc-eeecCCCCCHHHHHHHHHHHHHcCCCCc--------------ccCCceEEEccccccc
Q 003038 211 RNEDVMY-VIENLMSKRKRNF-VVVGECLASIEGVVRGVIDKIEKGDVPE--------------ALRDVKCLPLSISSFR 274 (854)
Q Consensus 211 r~~ei~~-v~~~L~r~~k~n~-vLvGe~GvGKta~v~~la~~i~~~~vp~--------------~L~~~~~~~l~~~~l~ 274 (854)
..+.+.+ +...+..++-.+. +|+||+|+|||++++.+|..+...+-+. ...+..++.++.++
T Consensus 18 Gqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas-- 95 (535)
T PRK08451 18 GQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAAS-- 95 (535)
T ss_pred CcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEecccc--
Confidence 4455444 4444444333444 8999999999999999999987543221 11233455554321
Q ss_pred ccchHHHHHHHHHHHHHHHhhh--CCCeEEEeCccccc
Q 003038 275 HMNRVEVEQRVEEIKNLVRSCL--GRGIVLNLGDLEWA 310 (854)
Q Consensus 275 ~~~rge~E~rl~~l~~~~~~~~--~~~~ILfidel~~l 310 (854)
.+| -.-++++++.+.... ++.-|++|||+|.+
T Consensus 96 --~~g--Id~IRelie~~~~~P~~~~~KVvIIDEad~L 129 (535)
T PRK08451 96 --NRG--IDDIRELIEQTKYKPSMARFKIFIIDEVHML 129 (535)
T ss_pred --ccC--HHHHHHHHHHHhhCcccCCeEEEEEECcccC
Confidence 111 012333433332110 34568999999999
No 393
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.02 E-value=0.0019 Score=71.27 Aligned_cols=93 Identities=12% Similarity=0.046 Sum_probs=56.4
Q ss_pred cHHHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHH
Q 003038 211 RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKN 290 (854)
Q Consensus 211 r~~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~ 290 (854)
+++.+..+...+.+.+..+++|+||||+|||++++.++..+.... ....++.++.+.-. ...-+...+.++..
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~-----~~~~~i~~~~~~~~--~~~~~~~~i~~~~~ 94 (319)
T PRK00440 22 QEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGED-----WRENFLELNASDER--GIDVIRNKIKEFAR 94 (319)
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCc-----cccceEEecccccc--chHHHHHHHHHHHh
Confidence 677777777777766667899999999999999999998875432 12234444433211 11112223332222
Q ss_pred HHHhhhCCCeEEEeCccccc
Q 003038 291 LVRSCLGRGIVLNLGDLEWA 310 (854)
Q Consensus 291 ~~~~~~~~~~ILfidel~~l 310 (854)
..-......-+|+|||++.+
T Consensus 95 ~~~~~~~~~~vviiDe~~~l 114 (319)
T PRK00440 95 TAPVGGAPFKIIFLDEADNL 114 (319)
T ss_pred cCCCCCCCceEEEEeCcccC
Confidence 11000013568999999998
No 394
>PHA00729 NTP-binding motif containing protein
Probab=97.01 E-value=0.0023 Score=67.22 Aligned_cols=37 Identities=8% Similarity=-0.016 Sum_probs=31.3
Q ss_pred HHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHH
Q 003038 216 MYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIE 252 (854)
Q Consensus 216 ~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~ 252 (854)
+++++-|.-....|++|+|+||||||+++.+|+.++.
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4566666666777999999999999999999999864
No 395
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.00 E-value=0.0013 Score=70.62 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=28.6
Q ss_pred HHHHHhhc-cCcCCceeecCCCCCHHHHHHHHHHHHHc
Q 003038 217 YVIENLMS-KRKRNFVVVGECLASIEGVVRGVIDKIEK 253 (854)
Q Consensus 217 ~v~~~L~r-~~k~n~vLvGe~GvGKta~v~~la~~i~~ 253 (854)
|+|+.|.- .+....+|+||+|||||++++.++..+..
T Consensus 5 ~~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 5 RVVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred hheeeecccCCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 45555532 36678999999999999999999887654
No 396
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=96.99 E-value=0.0035 Score=73.14 Aligned_cols=151 Identities=16% Similarity=0.175 Sum_probs=92.0
Q ss_pred HHHHHHHHhhcCcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCC
Q 003038 607 ENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHN 686 (854)
Q Consensus 607 e~l~~L~~~L~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~ 686 (854)
.-++.|.+-|.-.|.|++.+...|.-.+.- |..+..+ ...+-|....++++|.||+||+.+-++.+..+ .
T Consensus 334 nly~~lv~Sl~PsIyGhe~VK~GilL~LfG---Gv~K~a~---eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fs----P 403 (764)
T KOG0480|consen 334 NLYKNLVNSLFPSIYGHELVKAGILLSLFG---GVHKSAG---EGTSLRGDINVCIVGDPGTGKSQFLKAVCAFS----P 403 (764)
T ss_pred hHHHHHHHhhCccccchHHHHhhHHHHHhC---CccccCC---CCccccCCceEEEeCCCCccHHHHHHHHhccC----C
Confidence 346889999999999999998887666543 4443221 01234667899999999999999999887654 1
Q ss_pred ceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCC
Q 003038 687 NFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSG 766 (854)
Q Consensus 687 ~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G 766 (854)
+=|+.....-+ + ..-...-..++-...|. -=.+|+--.-..|-.|||+|||+-.-|.+|..+||.-.
T Consensus 404 R~vYtsGkaSS-a-----AGLTaaVvkD~esgdf~-iEAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQt------ 470 (764)
T KOG0480|consen 404 RSVYTSGKASS-A-----AGLTAAVVKDEESGDFT-IEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQT------ 470 (764)
T ss_pred cceEecCcccc-c-----ccceEEEEecCCCCcee-eecCcEEEccCceEEechhcccChHhHHHHHHHHHhhe------
Confidence 21222211111 0 00000000011110110 00223333446799999999999999999999999744
Q ss_pred ceeecCCeEEEEecCC
Q 003038 767 DEVSLGDAIVILSCES 782 (854)
Q Consensus 767 ~~v~~~~aIiIlTsn~ 782 (854)
|+...|=|+.|-|.
T Consensus 471 --ISIaKAGv~aTLnA 484 (764)
T KOG0480|consen 471 --ISIAKAGVVATLNA 484 (764)
T ss_pred --ehheecceEEeecc
Confidence 55555557776654
No 397
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.99 E-value=0.0041 Score=73.03 Aligned_cols=98 Identities=8% Similarity=0.195 Sum_probs=68.1
Q ss_pred CcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEc-cccccCcCCCccccccccccCC-CCCCchHHHHHHHHHcCC
Q 003038 655 KEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIA-LSSFSSTRADSTEDSRNKRSRD-EQSCSYIERFAEAVSNNP 732 (854)
Q Consensus 655 kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id-~s~~~~~~~~s~e~~~~~rl~~-~~g~g~~e~L~eav~~~p 732 (854)
++.|.++|.||+|+|||++..++-..+-....+++.+. --||.- +......+. ..|..|.+-+..++|..|
T Consensus 240 ~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~-------~~~~q~~v~~~~g~~f~~~lr~~LR~dP 312 (486)
T TIGR02533 240 RPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQI-------EGIGQIQVNPKIGLTFAAGLRAILRQDP 312 (486)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeec-------CCCceEEEccccCccHHHHHHHHHhcCC
Confidence 34678999999999999999977666644445666663 223331 100000111 223467778888999888
Q ss_pred CEEEEEecCCCCCHHHHHHHHHhhhcCeEe
Q 003038 733 HRVFLIEDVEQADYCSQKGFKRAIESGRIV 762 (854)
Q Consensus 733 ~~ViliDEieka~~~v~~~Ll~~le~G~l~ 762 (854)
.||++.||- +++.....+++..+|.+.
T Consensus 313 -DvI~vGEiR--d~eta~~a~~aa~tGHlv 339 (486)
T TIGR02533 313 -DIIMVGEIR--DLETAQIAIQASLTGHLV 339 (486)
T ss_pred -CEEEEeCCC--CHHHHHHHHHHHHhCCcE
Confidence 799999999 788888888999998765
No 398
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.97 E-value=0.0059 Score=73.28 Aligned_cols=94 Identities=17% Similarity=0.146 Sum_probs=58.5
Q ss_pred cHHHHHHHHHHhhccCcC-CceeecCCCCCHHHHHHHHHHHHHcCCC-----C----c----------ccCCceEEEccc
Q 003038 211 RNEDVMYVIENLMSKRKR-NFVVVGECLASIEGVVRGVIDKIEKGDV-----P----E----------ALRDVKCLPLSI 270 (854)
Q Consensus 211 r~~ei~~v~~~L~r~~k~-n~vLvGe~GvGKta~v~~la~~i~~~~v-----p----~----------~L~~~~~~~l~~ 270 (854)
.+.-++.+...+.+.+.. ..+|+||+|+|||++++.+|+.+..... | . .-....|+.++.
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a 108 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDA 108 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEecc
Confidence 555666666667665544 4899999999999999999998864210 1 0 011223444444
Q ss_pred ccccccchHHHHHHHHHHHHHHHhhh--CCCeEEEeCccccc
Q 003038 271 SSFRHMNRVEVEQRVEEIKNLVRSCL--GRGIVLNLGDLEWA 310 (854)
Q Consensus 271 ~~l~~~~rge~E~rl~~l~~~~~~~~--~~~~ILfidel~~l 310 (854)
.+-. .. ..++++++.++... ++.-|++|||+|.+
T Consensus 109 ~s~~--gv----d~IReIie~~~~~P~~a~~KVvIIDEad~L 144 (598)
T PRK09111 109 ASHT--GV----DDIREIIESVRYRPVSARYKVYIIDEVHML 144 (598)
T ss_pred cccC--CH----HHHHHHHHHHHhchhcCCcEEEEEEChHhC
Confidence 3211 12 23566776665431 34568999999999
No 399
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.96 E-value=0.0023 Score=76.30 Aligned_cols=57 Identities=7% Similarity=0.133 Sum_probs=41.4
Q ss_pred cHHHHHHHHHHhhc--cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccccccc
Q 003038 211 RNEDVMYVIENLMS--KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFR 274 (854)
Q Consensus 211 r~~ei~~v~~~L~r--~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~ 274 (854)
+..-++++++-+.+ +...+++|+||+|+|||.+|+.+...-.. ++..|+.+|++.+-
T Consensus 201 ~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r-------~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 201 KSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPR-------AKRPFVKVNCAALS 259 (534)
T ss_pred CCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCC-------CCCCeEEeecCCCC
Confidence 55555555555432 36678999999999999999999865321 45689999988763
No 400
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.96 E-value=0.0065 Score=69.68 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=31.1
Q ss_pred cHHHHHHHHHH-hhccCcCC-ceeecCCCCCHHHHHHHHHHHHHc
Q 003038 211 RNEDVMYVIEN-LMSKRKRN-FVVVGECLASIEGVVRGVIDKIEK 253 (854)
Q Consensus 211 r~~ei~~v~~~-L~r~~k~n-~vLvGe~GvGKta~v~~la~~i~~ 253 (854)
..+.+...+.- +.+.+-.+ .+|+||||+|||++|+.+|+.+..
T Consensus 20 Gq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 20 AQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred ChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 44555444444 34334444 789999999999999999999865
No 401
>PRK06620 hypothetical protein; Validated
Probab=96.91 E-value=0.0027 Score=66.61 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=21.3
Q ss_pred eeEEEecCCCchHHHHHHHHHHHH
Q 003038 658 TWLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
.+++|+||+|+|||.++++++...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc
Confidence 479999999999999999987754
No 402
>PRK09087 hypothetical protein; Validated
Probab=96.90 E-value=0.0019 Score=68.35 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=21.2
Q ss_pred eeEEEecCCCchHHHHHHHHHHHH
Q 003038 658 TWLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
.+++|+||+|+|||.|++++++..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~ 68 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKS 68 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhc
Confidence 368999999999999999988753
No 403
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.0015 Score=72.58 Aligned_cols=69 Identities=16% Similarity=0.233 Sum_probs=43.8
Q ss_pred CcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCC-chH--HHHHHHHHcC
Q 003038 655 KEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSC-SYI--ERFAEAVSNN 731 (854)
Q Consensus 655 kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~-g~~--e~L~eav~~~ 731 (854)
.|.-.+||+||||+|||..||.||+.- |-... =|+.- + +.|-|. +.- ..|+++-.+.
T Consensus 382 apfRNilfyGPPGTGKTm~ArelAr~S-GlDYA----~mTGG---------D------VAPlG~qaVTkiH~lFDWakkS 441 (630)
T KOG0742|consen 382 APFRNILFYGPPGTGKTMFARELARHS-GLDYA----IMTGG---------D------VAPLGAQAVTKIHKLFDWAKKS 441 (630)
T ss_pred chhhheeeeCCCCCCchHHHHHHHhhc-CCcee----hhcCC---------C------ccccchHHHHHHHHHHHHHhhc
Confidence 566789999999999999999999965 21111 11100 0 123333 222 2677777665
Q ss_pred CC-EEEEEecCCC
Q 003038 732 PH-RVFLIEDVEQ 743 (854)
Q Consensus 732 p~-~ViliDEiek 743 (854)
.. =++||||.|-
T Consensus 442 ~rGLllFIDEADA 454 (630)
T KOG0742|consen 442 RRGLLLFIDEADA 454 (630)
T ss_pred ccceEEEehhhHH
Confidence 54 4788999883
No 404
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.89 E-value=0.007 Score=72.68 Aligned_cols=94 Identities=13% Similarity=0.111 Sum_probs=54.1
Q ss_pred cHHHHHH-HHHHhhccCcCC-ceeecCCCCCHHHHHHHHHHHHHcCCCC---cc-----------cCCceEEEccccccc
Q 003038 211 RNEDVMY-VIENLMSKRKRN-FVVVGECLASIEGVVRGVIDKIEKGDVP---EA-----------LRDVKCLPLSISSFR 274 (854)
Q Consensus 211 r~~ei~~-v~~~L~r~~k~n-~vLvGe~GvGKta~v~~la~~i~~~~vp---~~-----------L~~~~~~~l~~~~l~ 274 (854)
..+.+.+ +...+..++-.+ .||+||+|+|||++++.+|..+...+-+ +. -....++.++..+-
T Consensus 20 Gq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s~- 98 (576)
T PRK14965 20 GQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGASN- 98 (576)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccCc-
Confidence 3344444 444444444444 4899999999999999999998653211 00 01122444433221
Q ss_pred ccchHHHHHHHHHHHHHHHhhh--CCCeEEEeCccccc
Q 003038 275 HMNRVEVEQRVEEIKNLVRSCL--GRGIVLNLGDLEWA 310 (854)
Q Consensus 275 ~~~rge~E~rl~~l~~~~~~~~--~~~~ILfidel~~l 310 (854)
.| -..+++|++.++... +..=|++|||+|.+
T Consensus 99 ---~~--v~~ir~l~~~~~~~p~~~~~KVvIIdev~~L 131 (576)
T PRK14965 99 ---TG--VDDIRELRENVKYLPSRSRYKIFIIDEVHML 131 (576)
T ss_pred ---cC--HHHHHHHHHHHHhccccCCceEEEEEChhhC
Confidence 11 123556666665321 33458999999999
No 405
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.88 E-value=0.011 Score=62.01 Aligned_cols=120 Identities=13% Similarity=0.204 Sum_probs=85.8
Q ss_pred ccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCc
Q 003038 620 VPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSST 699 (854)
Q Consensus 620 V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~ 699 (854)
++|-+...+.+...-.+.-.|. |.-.+|++|..|+||+.+.|++-..+.+..-.+|.++-.+..
T Consensus 62 l~Gvd~qk~~L~~NT~~F~~G~--------------pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~-- 125 (287)
T COG2607 62 LVGVDRQKEALVRNTEQFAEGL--------------PANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA-- 125 (287)
T ss_pred HhCchHHHHHHHHHHHHHHcCC--------------cccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh--
Confidence 4666666666666666666653 455889999999999999999999888877888877643222
Q ss_pred CCCccccccccccCCCCCCchHHHHHHHHHcCCCE-EEEEecCCCC-CHHHHHHHHHhhhcCeEecCCCceeecCCeEEE
Q 003038 700 RADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHR-VFLIEDVEQA-DYCSQKGFKRAIESGRIVTSSGDEVSLGDAIVI 777 (854)
Q Consensus 700 ~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~-ViliDEieka-~~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIiI 777 (854)
. .-.|.+.++..|.+ |||+|+.--= +.+....|+.++|-| + +---.|++|.
T Consensus 126 -----------~---------Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~-v------e~rP~NVl~Y 178 (287)
T COG2607 126 -----------T---------LPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGG-V------EGRPANVLFY 178 (287)
T ss_pred -----------h---------HHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCC-c------ccCCCeEEEE
Confidence 1 11478888888876 5677876533 455778888888743 2 2345799999
Q ss_pred EecCC
Q 003038 778 LSCES 782 (854)
Q Consensus 778 lTsn~ 782 (854)
.|||-
T Consensus 179 ATSNR 183 (287)
T COG2607 179 ATSNR 183 (287)
T ss_pred EecCC
Confidence 99984
No 406
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.87 E-value=0.01 Score=66.88 Aligned_cols=43 Identities=7% Similarity=0.045 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhccCcC-CceeecCCCCCHHHHHHHHHHHHHcC
Q 003038 212 NEDVMYVIENLMSKRKR-NFVVVGECLASIEGVVRGVIDKIEKG 254 (854)
Q Consensus 212 ~~ei~~v~~~L~r~~k~-n~vLvGe~GvGKta~v~~la~~i~~~ 254 (854)
++-+..+...+.+.+-. ..+|+||+|+|||+++..+|+.+...
T Consensus 29 ~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~ 72 (351)
T PRK09112 29 EEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSH 72 (351)
T ss_pred HHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 34456666666655444 48899999999999999999999874
No 407
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.87 E-value=0.0051 Score=75.56 Aligned_cols=144 Identities=12% Similarity=0.114 Sum_probs=81.3
Q ss_pred cHHHHHHHHHHhhc--cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccccccccc------------
Q 003038 211 RNEDVMYVIENLMS--KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHM------------ 276 (854)
Q Consensus 211 r~~ei~~v~~~L~r--~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~------------ 276 (854)
+..-++++++-+.+ +...+++|+||+|||||.+|+++...-. .++..++.+++..+...
T Consensus 381 ~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~-------r~~~~~v~i~c~~~~~~~~~~~lfg~~~~ 453 (686)
T PRK15429 381 RSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG-------RNNRRMVKMNCAAMPAGLLESDLFGHERG 453 (686)
T ss_pred cCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcC-------CCCCCeEEEecccCChhHhhhhhcCcccc
Confidence 45555555443332 3566899999999999999999876421 24668999888766321
Q ss_pred -chHHHHHHHHHHHHHHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhccc-----CCC----Cc
Q 003038 277 -NRVEVEQRVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG-----IGE----NA 345 (854)
Q Consensus 277 -~rge~E~rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-----~~g----~g 345 (854)
+.|....++. .+... .+-.||||||+.+ ... ...+.++|.. .++ ..
T Consensus 454 ~~~g~~~~~~g----~le~a--~~GtL~Ldei~~L~~~~-----------------Q~~L~~~l~~~~~~~~g~~~~~~~ 510 (686)
T PRK15429 454 AFTGASAQRIG----RFELA--DKSSLFLDEVGDMPLEL-----------------QPKLLRVLQEQEFERLGSNKIIQT 510 (686)
T ss_pred cccccccchhh----HHHhc--CCCeEEEechhhCCHHH-----------------HHHHHHHHHhCCEEeCCCCCcccc
Confidence 1111112221 22222 2346999999999 332 1234445521 011 12
Q ss_pred eEEEEEecCHHHHHHhhccCCchhh-h-hccCCCCCCCchHHH
Q 003038 346 RFWLMGIATFQSYMRCKSGHPSLET-L-WSLHPLTIPAGSLSL 386 (854)
Q Consensus 346 ~l~lIgatT~~ey~k~~~~~pale~-~-~~~~~v~i~~~sl~~ 386 (854)
++++|++|+.+--.. ..+..|.+ + ++|..++|.=|+|..
T Consensus 511 ~~RiI~~t~~~l~~~--~~~~~f~~~L~~~l~~~~i~lPpLre 551 (686)
T PRK15429 511 DVRLIAATNRDLKKM--VADREFRSDLYYRLNVFPIHLPPLRE 551 (686)
T ss_pred eEEEEEeCCCCHHHH--HHcCcccHHHHhccCeeEEeCCChhh
Confidence 689999998754322 23344433 2 266666665555443
No 408
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.86 E-value=0.0034 Score=70.54 Aligned_cols=95 Identities=13% Similarity=0.169 Sum_probs=58.5
Q ss_pred HHHHHHHHHhhc-cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEE--cc-----ccc--------cccc
Q 003038 213 EDVMYVIENLMS-KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLP--LS-----ISS--------FRHM 276 (854)
Q Consensus 213 ~ei~~v~~~L~r-~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~--l~-----~~~--------l~~~ 276 (854)
.-..|+|+.|.- .+..+.+|+||||||||++++.+++.|.++. .++.++. ++ +.. +.+.
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~~-----~dv~~vv~lIgER~~EV~df~~~i~~~Vvas 192 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANH-----PEVHLMVLLIDERPEEVTDMRRSVKGEVYAS 192 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhcC-----CCceEEEEEecCCCCCHHHHHHHHhhhEEee
Confidence 345668888874 3556889999999999999999999987752 1233222 11 111 1111
Q ss_pred -------chHHHHHHHHHHHHHHHhhhCCCeEEEeCccccc-ccc
Q 003038 277 -------NRVEVEQRVEEIKNLVRSCLGRGIVLNLGDLEWA-EFR 313 (854)
Q Consensus 277 -------~rge~E~rl~~l~~~~~~~~~~~~ILfidel~~l-~~~ 313 (854)
.+-..-.-+.++.+..... |+.|||++||++++ .+.
T Consensus 193 t~de~~~~~~~v~~~~~~~Ae~f~~~-GkdVVLvlDsltr~A~A~ 236 (380)
T PRK12608 193 TFDRPPDEHIRVAELVLERAKRLVEQ-GKDVVILLDSLTRLARAY 236 (380)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEeCcHHHHHHH
Confidence 1111112233344444444 78999999999998 654
No 409
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.85 E-value=0.0096 Score=71.13 Aligned_cols=90 Identities=13% Similarity=0.090 Sum_probs=50.6
Q ss_pred HHHHHHHhhccCcCC-ceeecCCCCCHHHHHHHHHHHHHcCCCCc--------------ccCCceEEEcccccccccchH
Q 003038 215 VMYVIENLMSKRKRN-FVVVGECLASIEGVVRGVIDKIEKGDVPE--------------ALRDVKCLPLSISSFRHMNRV 279 (854)
Q Consensus 215 i~~v~~~L~r~~k~n-~vLvGe~GvGKta~v~~la~~i~~~~vp~--------------~L~~~~~~~l~~~~l~~~~rg 279 (854)
+..+...+.+++-.+ .+|+||+|+|||++++.+|..+....-+. ......++.++..+- ....
T Consensus 25 v~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas~--~~vd 102 (563)
T PRK06647 25 VETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGASN--TSVQ 102 (563)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecCccc--CCHH
Confidence 344444444444444 68999999999999999999986532111 111223343332210 0111
Q ss_pred HHHHHHHHHHHHHHhhh--CCCeEEEeCccccc
Q 003038 280 EVEQRVEEIKNLVRSCL--GRGIVLNLGDLEWA 310 (854)
Q Consensus 280 e~E~rl~~l~~~~~~~~--~~~~ILfidel~~l 310 (854)
.++++++.+.... ++.-|++|||+|.+
T Consensus 103 ----dIr~l~e~~~~~p~~~~~KVvIIDEa~~L 131 (563)
T PRK06647 103 ----DVRQIKEEIMFPPASSRYRVYIIDEVHML 131 (563)
T ss_pred ----HHHHHHHHHHhchhcCCCEEEEEEChhhc
Confidence 2334444444221 45678999999999
No 410
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.84 E-value=0.0059 Score=68.94 Aligned_cols=101 Identities=17% Similarity=0.212 Sum_probs=65.0
Q ss_pred ceeEEEecCCCchHHHHHHHHHHHHh---CCCCceEEEc-cccccCcCCCccccc-cccc-cCCCCCCchHHHHHHHHHc
Q 003038 657 ETWLFFQGVDADAKEKIAKELARLVF---GSHNNFVSIA-LSSFSSTRADSTEDS-RNKR-SRDEQSCSYIERFAEAVSN 730 (854)
Q Consensus 657 ~~~lLf~Gp~GvGKt~lAr~LA~~lf---g~~~~~i~id-~s~~~~~~~~s~e~~-~~~r-l~~~~g~g~~e~L~eav~~ 730 (854)
.+.+++.||+|+|||++.++|.+.+. +....++.+. --+|... ... ... .+.. .++....+|.+-+..++|.
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~-~~~-~~~~~v~Q~~v~~~~~~~~~~l~~aLR~ 211 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYD-EIE-TISASVCQSEIPRHLNNFAAGVRNALRR 211 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEecc-ccc-cccceeeeeeccccccCHHHHHHHHhcc
Confidence 47899999999999999999999883 2223444432 2222200 000 000 0000 0111122677778889999
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHhhhcCeEe
Q 003038 731 NPHRVFLIEDVEQADYCSQKGFKRAIESGRIV 762 (854)
Q Consensus 731 ~p~~ViliDEieka~~~v~~~Ll~~le~G~l~ 762 (854)
.|. +|++.|+. +.+.....+++...|.+.
T Consensus 212 ~Pd-~i~vGEiR--d~et~~~al~aa~tGh~v 240 (358)
T TIGR02524 212 KPH-AILVGEAR--DAETISAALEAALTGHPV 240 (358)
T ss_pred CCC-EEeeeeeC--CHHHHHHHHHHHHcCCcE
Confidence 996 88899877 888888899999988654
No 411
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.83 E-value=0.0019 Score=67.83 Aligned_cols=87 Identities=13% Similarity=0.102 Sum_probs=49.3
Q ss_pred ceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCC-chHHHHHHHHH--cCCC
Q 003038 657 ETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSC-SYIERFAEAVS--NNPH 733 (854)
Q Consensus 657 ~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~-g~~e~L~eav~--~~p~ 733 (854)
..++||+|++|+|||++|+.|+ ....++..|.+...-. ......+.+.-.+..+ .+.+.+ +.+. .++|
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~-----~~~~~~~~d~~~~~l~---g~~~~~v~~~d~~~~~~~~~d~l-~~~~~~~~~y 82 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP-----GKTLVLSFDMSSKVLI---GDENVDIADHDDMPPIQAMVEFY-VMQNIQAVKY 82 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC-----CCCEEEeccccchhcc---CCCCCceeecCCCCCHHHHHHHH-HHHHhccccC
Confidence 3589999999999999999886 2334566666532200 0011111111111111 222333 3333 3669
Q ss_pred EEEEEecCCCCCHHHHHHH
Q 003038 734 RVFLIEDVEQADYCSQKGF 752 (854)
Q Consensus 734 ~ViliDEieka~~~v~~~L 752 (854)
.+|+||+|+.+-..+...+
T Consensus 83 dtVVIDsI~~l~~~~~~~~ 101 (220)
T TIGR01618 83 DNIVIDNISALQNLWLENI 101 (220)
T ss_pred CEEEEecHHHHHHHHHHHH
Confidence 9999999999866554433
No 412
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.83 E-value=0.0065 Score=72.80 Aligned_cols=98 Identities=10% Similarity=0.187 Sum_probs=68.9
Q ss_pred CcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEc-cccccCcCCCccccccccccCC-CCCCchHHHHHHHHHcCC
Q 003038 655 KEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIA-LSSFSSTRADSTEDSRNKRSRD-EQSCSYIERFAEAVSNNP 732 (854)
Q Consensus 655 kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id-~s~~~~~~~~s~e~~~~~rl~~-~~g~g~~e~L~eav~~~p 732 (854)
++.|.+||.||+|+|||++..++.+.+.....+++.+. --||.- +......+. ..|.+|.+-|..++|..|
T Consensus 314 ~~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~~-------~~~~q~~v~~~~g~~~~~~l~~~LR~dP 386 (564)
T TIGR02538 314 KPQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINL-------PGINQVNVNPKIGLTFAAALRSFLRQDP 386 (564)
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceecC-------CCceEEEeccccCCCHHHHHHHHhccCC
Confidence 35689999999999999998877777754445666553 223331 110000111 224477778888889888
Q ss_pred CEEEEEecCCCCCHHHHHHHHHhhhcCeEe
Q 003038 733 HRVFLIEDVEQADYCSQKGFKRAIESGRIV 762 (854)
Q Consensus 733 ~~ViliDEieka~~~v~~~Ll~~le~G~l~ 762 (854)
.||++.||- +++.....+++..+|.+.
T Consensus 387 -DvI~vGEiR--d~eta~~a~~aa~tGHlv 413 (564)
T TIGR02538 387 -DIIMVGEIR--DLETAEIAIKAAQTGHLV 413 (564)
T ss_pred -CEEEeCCCC--CHHHHHHHHHHHHcCCcE
Confidence 799999999 899888889999998765
No 413
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.83 E-value=0.0059 Score=70.40 Aligned_cols=97 Identities=10% Similarity=0.209 Sum_probs=70.7
Q ss_pred CcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEc-cccccCcCCCcccccccccc-CC-CCCCchHHHHHHHHHcC
Q 003038 655 KEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIA-LSSFSSTRADSTEDSRNKRS-RD-EQSCSYIERFAEAVSNN 731 (854)
Q Consensus 655 kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id-~s~~~~~~~~s~e~~~~~rl-~~-~~g~g~~e~L~eav~~~ 731 (854)
+|.|-+||.||+|+|||++-.++-..++....+++.+. -=||.. ..+... +. .-|..|..-|.-.+|+.
T Consensus 256 ~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~--------~gI~Q~qVN~k~gltfa~~LRa~LRqD 327 (500)
T COG2804 256 RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQL--------PGINQVQVNPKIGLTFARALRAILRQD 327 (500)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeec--------CCcceeecccccCCCHHHHHHHHhccC
Confidence 67899999999999999999988888888777777763 222320 001111 11 22346766677777777
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHhhhcCeEe
Q 003038 732 PHRVFLIEDVEQADYCSQKGFKRAIESGRIV 762 (854)
Q Consensus 732 p~~ViliDEieka~~~v~~~Ll~~le~G~l~ 762 (854)
| .||++.||. |.+.-....++--+|.+.
T Consensus 328 P-DvImVGEIR--D~ETAeiavqAalTGHLV 355 (500)
T COG2804 328 P-DVIMVGEIR--DLETAEIAVQAALTGHLV 355 (500)
T ss_pred C-CeEEEeccC--CHHHHHHHHHHHhcCCeE
Confidence 7 899999999 888888899999888775
No 414
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.82 E-value=0.0096 Score=69.96 Aligned_cols=94 Identities=13% Similarity=0.133 Sum_probs=52.6
Q ss_pred cHHHHHHHH-HHhhccCcCCc-eeecCCCCCHHHHHHHHHHHHHc--CCC--Cc----------ccCCceEEEccccccc
Q 003038 211 RNEDVMYVI-ENLMSKRKRNF-VVVGECLASIEGVVRGVIDKIEK--GDV--PE----------ALRDVKCLPLSISSFR 274 (854)
Q Consensus 211 r~~ei~~v~-~~L~r~~k~n~-vLvGe~GvGKta~v~~la~~i~~--~~v--p~----------~L~~~~~~~l~~~~l~ 274 (854)
..+.+.+.+ ..+..++-.+. +|+||+|+|||++++.+|..+.. +.. |- ......++.++.++
T Consensus 20 Gq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas-- 97 (486)
T PRK14953 20 GQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAAS-- 97 (486)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCcc--
Confidence 445544444 44444344454 68999999999999999988763 111 10 00112344444322
Q ss_pred ccchHHHHHHHHHHHHHHHhhh--CCCeEEEeCccccc
Q 003038 275 HMNRVEVEQRVEEIKNLVRSCL--GRGIVLNLGDLEWA 310 (854)
Q Consensus 275 ~~~rge~E~rl~~l~~~~~~~~--~~~~ILfidel~~l 310 (854)
.+| . ..++.+.+.+.... +..-|++|||+|.+
T Consensus 98 --~~g-v-d~ir~I~~~~~~~P~~~~~KVvIIDEad~L 131 (486)
T PRK14953 98 --NRG-I-DDIRALRDAVSYTPIKGKYKVYIIDEAHML 131 (486)
T ss_pred --CCC-H-HHHHHHHHHHHhCcccCCeeEEEEEChhhc
Confidence 122 1 12334555554321 34579999999999
No 415
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.82 E-value=0.0094 Score=71.77 Aligned_cols=94 Identities=14% Similarity=0.117 Sum_probs=53.3
Q ss_pred cHHHH-HHHHHHhhccCcCC-ceeecCCCCCHHHHHHHHHHHHHcCCC-Cc--------------ccCCceEEEcccccc
Q 003038 211 RNEDV-MYVIENLMSKRKRN-FVVVGECLASIEGVVRGVIDKIEKGDV-PE--------------ALRDVKCLPLSISSF 273 (854)
Q Consensus 211 r~~ei-~~v~~~L~r~~k~n-~vLvGe~GvGKta~v~~la~~i~~~~v-p~--------------~L~~~~~~~l~~~~l 273 (854)
..+.+ ..+...+.+++..+ .||+||+|+|||++++.+|+.+....- +. .-.+..++.++.+..
T Consensus 20 Gq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~ 99 (585)
T PRK14950 20 GQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAASH 99 (585)
T ss_pred CCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEecccc
Confidence 34444 44555555544444 489999999999999999988753210 10 001123444443211
Q ss_pred cccchHHHHHHHHHHHHHHHhhh--CCCeEEEeCccccc
Q 003038 274 RHMNRVEVEQRVEEIKNLVRSCL--GRGIVLNLGDLEWA 310 (854)
Q Consensus 274 ~~~~rge~E~rl~~l~~~~~~~~--~~~~ILfidel~~l 310 (854)
. ... .++++++.+.... +..-|++|||+|.+
T Consensus 100 ~--~vd----~ir~ii~~~~~~p~~~~~kVvIIDEa~~L 132 (585)
T PRK14950 100 T--SVD----DAREIIERVQFRPALARYKVYIIDEVHML 132 (585)
T ss_pred C--CHH----HHHHHHHHHhhCcccCCeEEEEEeChHhC
Confidence 1 112 2445555444321 34568999999999
No 416
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=96.81 E-value=0.0049 Score=71.12 Aligned_cols=144 Identities=9% Similarity=0.118 Sum_probs=84.4
Q ss_pred HHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccc--------c-chHHHHH
Q 003038 213 EDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRH--------M-NRVEVEQ 283 (854)
Q Consensus 213 ~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~--------~-~rge~E~ 283 (854)
.++++.+.-++ .+.-++++.||+||||+.+++++=+.=.+ ++..|+.++++++-. | -+|-|.-
T Consensus 151 ~~l~~~i~kvA-~s~a~VLI~GESGtGKElvAr~IH~~S~R-------~~~PFVavNcaAip~~l~ESELFGhekGAFTG 222 (464)
T COG2204 151 QQLRRLIAKVA-PSDASVLITGESGTGKELVARAIHQASPR-------AKGPFIAVNCAAIPENLLESELFGHEKGAFTG 222 (464)
T ss_pred HHHHHHHHHHh-CCCCCEEEECCCCCcHHHHHHHHHhhCcc-------cCCCceeeecccCCHHHHHHHhhcccccCcCC
Confidence 45666666666 48889999999999999999988654222 356899999876632 1 2333332
Q ss_pred HHHHHHHHHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhccc-----CCCC----ceEEEEEec
Q 003038 284 RVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG-----IGEN----ARFWLMGIA 353 (854)
Q Consensus 284 rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-----~~g~----g~l~lIgat 353 (854)
-...-...++.. . |=.||+|||..+ -. +...+-+.|.. -+|+ =++++|+||
T Consensus 223 A~~~r~G~fE~A-~-GGTLfLDEI~~mpl~-----------------~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT 283 (464)
T COG2204 223 AITRRIGRFEQA-N-GGTLFLDEIGEMPLE-----------------LQVKLLRVLQEREFERVGGNKPIKVDVRIIAAT 283 (464)
T ss_pred cccccCcceeEc-C-CceEEeeccccCCHH-----------------HHHHHHHHHHcCeeEecCCCcccceeeEEEeec
Confidence 222211222322 2 336999999777 21 12234444421 1221 269999999
Q ss_pred CHHHHHHhhccCCchhh--hhccCCCCCCCchHH
Q 003038 354 TFQSYMRCKSGHPSLET--LWSLHPLTIPAGSLS 385 (854)
Q Consensus 354 T~~ey~k~~~~~pale~--~~~~~~v~i~~~sl~ 385 (854)
+-+=... ..+.-|.. .+||..|+|.-|.|.
T Consensus 284 ~~dL~~~--v~~G~FReDLyyRLnV~~i~iPpLR 315 (464)
T COG2204 284 NRDLEEE--VAAGRFREDLYYRLNVVPLRLPPLR 315 (464)
T ss_pred CcCHHHH--HHcCCcHHHHHhhhccceecCCccc
Confidence 8543222 23344433 258888887766654
No 417
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.80 E-value=0.013 Score=66.44 Aligned_cols=44 Identities=7% Similarity=0.030 Sum_probs=34.0
Q ss_pred cHHHH-HHHHHHhhccCcCC-ceeecCCCCCHHHHHHHHHHHHHcC
Q 003038 211 RNEDV-MYVIENLMSKRKRN-FVVVGECLASIEGVVRGVIDKIEKG 254 (854)
Q Consensus 211 r~~ei-~~v~~~L~r~~k~n-~vLvGe~GvGKta~v~~la~~i~~~ 254 (854)
..+++ +.+...+.+.+-.+ .+|+||+|+||++++..+|+.+...
T Consensus 23 Gq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~ 68 (365)
T PRK07471 23 GHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLAT 68 (365)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCC
Confidence 33444 55666667666566 7899999999999999999999754
No 418
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.79 E-value=0.008 Score=58.56 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=28.1
Q ss_pred EEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccc
Q 003038 660 LFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSS 695 (854)
Q Consensus 660 lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~ 695 (854)
++++||+|+|||.+++.++..+-.....++.+++..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~ 37 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEE 37 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCc
Confidence 689999999999999999987754445666666543
No 419
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.78 E-value=0.00043 Score=75.17 Aligned_cols=139 Identities=16% Similarity=0.270 Sum_probs=69.6
Q ss_pred HHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHH-HH
Q 003038 215 VMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNL-VR 293 (854)
Q Consensus 215 i~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~-~~ 293 (854)
...+++.|.. .+++++|+||+|+|||++++...+.+... ...+..+.++.... -..++.+++. +.
T Consensus 22 ~~~ll~~l~~-~~~pvLl~G~~GtGKT~li~~~l~~l~~~-------~~~~~~~~~s~~Tt------s~~~q~~ie~~l~ 87 (272)
T PF12775_consen 22 YSYLLDLLLS-NGRPVLLVGPSGTGKTSLIQNFLSSLDSD-------KYLVITINFSAQTT------SNQLQKIIESKLE 87 (272)
T ss_dssp HHHHHHHHHH-CTEEEEEESSTTSSHHHHHHHHHHCSTTC-------CEEEEEEES-TTHH------HHHHHHCCCTTEC
T ss_pred HHHHHHHHHH-cCCcEEEECCCCCchhHHHHhhhccCCcc-------ccceeEeeccCCCC------HHHHHHHHhhcEE
Confidence 4567777775 68899999999999999999876543221 11233344433211 0112222111 00
Q ss_pred hh---h-----CCCeEEEeCccccc--cccccccccccccchhhhHHHHHHHhhcc--c--CCCC------ceEEEEEec
Q 003038 294 SC---L-----GRGIVLNLGDLEWA--EFRASSSEQVRGYYCSIEHIIMEIGKLVC--G--IGEN------ARFWLMGIA 353 (854)
Q Consensus 294 ~~---~-----~~~~ILfidel~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~ll~--~--~~g~------g~l~lIgat 353 (854)
+. . ++.+|+||||++.- +.+++. + ...=+..++. . .+.+ -++.+|||.
T Consensus 88 k~~~~~~gP~~~k~lv~fiDDlN~p~~d~ygtq---------~---~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~ 155 (272)
T PF12775_consen 88 KRRGRVYGPPGGKKLVLFIDDLNMPQPDKYGTQ---------P---PIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAM 155 (272)
T ss_dssp ECTTEEEEEESSSEEEEEEETTT-S---TTS-----------H---HHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEE
T ss_pred cCCCCCCCCCCCcEEEEEecccCCCCCCCCCCc---------C---HHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEec
Confidence 10 0 45789999999988 554421 1 1222333331 1 1111 158899998
Q ss_pred CHHHHHHhhccCCchhhhhccCCCCCCCch
Q 003038 354 TFQSYMRCKSGHPSLETLWSLHPLTIPAGS 383 (854)
Q Consensus 354 T~~ey~k~~~~~pale~~~~~~~v~i~~~s 383 (854)
++.. =+ ....|.|-| -|+.+.++.|+
T Consensus 156 ~p~~-Gr-~~is~R~~r--~f~i~~~~~p~ 181 (272)
T PF12775_consen 156 NPTG-GR-NPISPRFLR--HFNILNIPYPS 181 (272)
T ss_dssp SSTT-T---SHHHHHHT--TEEEEE----T
T ss_pred CCCC-CC-CCCChHHhh--heEEEEecCCC
Confidence 7632 11 112344445 66777777665
No 420
>PRK10436 hypothetical protein; Provisional
Probab=96.77 E-value=0.006 Score=71.04 Aligned_cols=98 Identities=11% Similarity=0.183 Sum_probs=67.3
Q ss_pred CcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEc-cccccCcCCCccccccccccCCC-CCCchHHHHHHHHHcCC
Q 003038 655 KEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIA-LSSFSSTRADSTEDSRNKRSRDE-QSCSYIERFAEAVSNNP 732 (854)
Q Consensus 655 kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id-~s~~~~~~~~s~e~~~~~rl~~~-~g~g~~e~L~eav~~~p 732 (854)
+|.|.+||.||+|+|||++..++-+.+.....+++.+. --||.- +......+.+ .|..|..-|..++|..|
T Consensus 216 ~~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l-------~gi~Q~~v~~~~g~~f~~~lr~~LR~dP 288 (462)
T PRK10436 216 QPQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPL-------AGINQTQIHPKAGLTFQRVLRALLRQDP 288 (462)
T ss_pred hcCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccC-------CCcceEeeCCccCcCHHHHHHHHhcCCC
Confidence 35689999999999999988877676655455666653 223321 0000001221 23467677888888888
Q ss_pred CEEEEEecCCCCCHHHHHHHHHhhhcCeEe
Q 003038 733 HRVFLIEDVEQADYCSQKGFKRAIESGRIV 762 (854)
Q Consensus 733 ~~ViliDEieka~~~v~~~Ll~~le~G~l~ 762 (854)
.||++.||- +++.....+++..+|.+.
T Consensus 289 -DvI~vGEIR--D~eta~~al~AA~TGHlV 315 (462)
T PRK10436 289 -DVIMVGEIR--DGETAEIAIKAAQTGHLV 315 (462)
T ss_pred -CEEEECCCC--CHHHHHHHHHHHHcCCcE
Confidence 799999998 788888888888888776
No 421
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.76 E-value=0.0027 Score=68.71 Aligned_cols=96 Identities=15% Similarity=0.256 Sum_probs=63.1
Q ss_pred ceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEc-cccccCcCCCccccccccccC-CCCCCchHHHHHHHHHcCCCE
Q 003038 657 ETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIA-LSSFSSTRADSTEDSRNKRSR-DEQSCSYIERFAEAVSNNPHR 734 (854)
Q Consensus 657 ~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id-~s~~~~~~~~s~e~~~~~rl~-~~~g~g~~e~L~eav~~~p~~ 734 (854)
.+.++|.||+|+|||++.++|...+-.....++.+. -.|+.-. ..+. ..+. ....+.|.+.+..++|.+| .
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~-----~~~~-~~~~~~~~~~~~~~~l~~~LR~~p-D 199 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLP-----GPNQ-IQIQTRRDEISYEDLLKSALRQDP-D 199 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--S-----CSSE-EEEEEETTTBSHHHHHHHHTTS---S
T ss_pred ceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeec-----ccce-EEEEeecCcccHHHHHHHHhcCCC-C
Confidence 468999999999999999999998865536666664 2333310 0110 1111 1234477778888899888 6
Q ss_pred EEEEecCCCCCHHHHHHHHHhhhcCeEe
Q 003038 735 VFLIEDVEQADYCSQKGFKRAIESGRIV 762 (854)
Q Consensus 735 ViliDEieka~~~v~~~Ll~~le~G~l~ 762 (854)
+|++.||- ++++... ++++..|...
T Consensus 200 ~iiigEiR--~~e~~~~-~~a~~tGh~~ 224 (270)
T PF00437_consen 200 VIIIGEIR--DPEAAEA-IQAANTGHLG 224 (270)
T ss_dssp EEEESCE---SCHHHHH-HHHHHTT-EE
T ss_pred cccccccC--CHhHHHH-HHhhccCCce
Confidence 88899999 5578777 9999988653
No 422
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=96.72 E-value=0.0053 Score=74.81 Aligned_cols=142 Identities=11% Similarity=0.116 Sum_probs=82.6
Q ss_pred cHHHHHHHHHHhhc--cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHH
Q 003038 211 RNEDVMYVIENLMS--KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEI 288 (854)
Q Consensus 211 r~~ei~~v~~~L~r--~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l 288 (854)
....++++++-..+ +...+++|+||+||||+.+|+++-..-.. ++..|+.+|++.+-. ..++. ++
T Consensus 330 ~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r-------~~~pfv~vnc~~~~~---~~~~~---el 396 (638)
T PRK11388 330 DSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESER-------AAGPYIAVNCQLYPD---EALAE---EF 396 (638)
T ss_pred CCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCc-------cCCCeEEEECCCCCh---HHHHH---Hh
Confidence 56566666655443 36667999999999999999998765221 346899999887632 11111 12
Q ss_pred HH------------HHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhccc-----CCCC----ce
Q 003038 289 KN------------LVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG-----IGEN----AR 346 (854)
Q Consensus 289 ~~------------~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-----~~g~----g~ 346 (854)
+. .++.. .+-.||||||+.+ ... ...+.++|.. .++. -+
T Consensus 397 fg~~~~~~~~~~~g~~~~a--~~GtL~ldei~~l~~~~-----------------Q~~Ll~~l~~~~~~~~~~~~~~~~~ 457 (638)
T PRK11388 397 LGSDRTDSENGRLSKFELA--HGGTLFLEKVEYLSPEL-----------------QSALLQVLKTGVITRLDSRRLIPVD 457 (638)
T ss_pred cCCCCcCccCCCCCceeEC--CCCEEEEcChhhCCHHH-----------------HHHHHHHHhcCcEEeCCCCceEEee
Confidence 21 12121 2346999999999 432 1234455521 1110 15
Q ss_pred EEEEEecCHHHHHHhhccCCchhh--hhccCCCCCCCchHHH
Q 003038 347 FWLMGIATFQSYMRCKSGHPSLET--LWSLHPLTIPAGSLSL 386 (854)
Q Consensus 347 l~lIgatT~~ey~k~~~~~pale~--~~~~~~v~i~~~sl~~ 386 (854)
+++|++|+.+-... . ....|.+ .++|..++|.=|+|..
T Consensus 458 ~riI~~t~~~l~~~-~-~~~~f~~dL~~~l~~~~i~lPpLre 497 (638)
T PRK11388 458 VRVIATTTADLAML-V-EQNRFSRQLYYALHAFEITIPPLRM 497 (638)
T ss_pred EEEEEeccCCHHHH-H-hcCCChHHHhhhhceeEEeCCChhh
Confidence 89999998754322 1 2233333 1367777766555543
No 423
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=96.71 E-value=0.0048 Score=65.47 Aligned_cols=97 Identities=13% Similarity=0.166 Sum_probs=60.8
Q ss_pred EEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEec
Q 003038 661 FFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIED 740 (854)
Q Consensus 661 Lf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliDE 740 (854)
.+.||.|+|||++.|.||+.+ ...++.+++++-. +-..+.+ -+..++.- ..-+.|||
T Consensus 36 ~~~GpagtGKtetik~La~~l---G~~~~vfnc~~~~-------~~~~l~r-----------il~G~~~~--GaW~cfde 92 (231)
T PF12774_consen 36 ALSGPAGTGKTETIKDLARAL---GRFVVVFNCSEQM-------DYQSLSR-----------ILKGLAQS--GAWLCFDE 92 (231)
T ss_dssp EEESSTTSSHHHHHHHHHHCT---T--EEEEETTSSS--------HHHHHH-----------HHHHHHHH--T-EEEEET
T ss_pred CCcCCCCCCchhHHHHHHHHh---CCeEEEecccccc-------cHHHHHH-----------HHHHHhhc--Cchhhhhh
Confidence 368999999999999999988 4678899998655 2222222 12333332 56899999
Q ss_pred CCCCCHHHHHHHHHhhh-------cC--eEecCCCceeecC-CeEEEEecC
Q 003038 741 VEQADYCSQKGFKRAIE-------SG--RIVTSSGDEVSLG-DAIVILSCE 781 (854)
Q Consensus 741 ieka~~~v~~~Ll~~le-------~G--~l~d~~G~~v~~~-~aIiIlTsn 781 (854)
+++++.++...+.+-+. .+ ++.- .|+++.+. ++-|.+|.|
T Consensus 93 fnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~-~g~~i~l~~~~~iFiT~n 142 (231)
T PF12774_consen 93 FNRLSEEVLSVISQQIQSIQDALRAKQKSFTL-EGQEIKLNPNCGIFITMN 142 (231)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEE-TTCEEE--TT-EEEEEE-
T ss_pred hhhhhHHHHHHHHHHHHHHHHhhccccccccc-CCCEEEEccceeEEEeec
Confidence 99999998887765543 22 2322 47778775 433444565
No 424
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=96.69 E-value=0.0097 Score=70.57 Aligned_cols=147 Identities=9% Similarity=0.063 Sum_probs=79.5
Q ss_pred HHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHH-cCCCCcccCCceEEEccccccccc---------chHHHHHH
Q 003038 215 VMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIE-KGDVPEALRDVKCLPLSISSFRHM---------NRVEVEQR 284 (854)
Q Consensus 215 i~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~-~~~vp~~L~~~~~~~l~~~~l~~~---------~rge~E~r 284 (854)
+++.++-++ +...+++|+||+|+||+.+|+.+-.... ....+..-++..|+.+|++.+-.. -.|.|..-
T Consensus 231 ~~~~i~~~A-~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lleseLFG~~~gaftga 309 (538)
T PRK15424 231 VRQTILLYA-RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGS 309 (538)
T ss_pred HHHHHHHHh-CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHHhcCCccccccCc
Confidence 344444444 3677999999999999999999876411 111112235678999998876321 01111100
Q ss_pred ----HHHHHHHHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhccc-----CCCC----ceEEEE
Q 003038 285 ----VEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG-----IGEN----ARFWLM 350 (854)
Q Consensus 285 ----l~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-----~~g~----g~l~lI 350 (854)
-..+++.+ . +=.||||||+.+ .... ..+.++|.. -++. -++++|
T Consensus 310 ~~~~~~Gl~e~A----~-gGTLfLdeI~~Lp~~~Q-----------------~kLl~~L~e~~~~r~G~~~~~~~dvRiI 367 (538)
T PRK15424 310 RRGGRAGLFEIA----H-GGTLFLDEIGEMPLPLQ-----------------TRLLRVLEEKEVTRVGGHQPVPVDVRVI 367 (538)
T ss_pred cccccCCchhcc----C-CCEEEEcChHhCCHHHH-----------------HHHHhhhhcCeEEecCCCceeccceEEE
Confidence 01122222 2 235999999999 4322 234445521 0111 147999
Q ss_pred EecCHHHHHHhhccCCchhh--hhccCCCCCCCchHHH
Q 003038 351 GIATFQSYMRCKSGHPSLET--LWSLHPLTIPAGSLSL 386 (854)
Q Consensus 351 gatT~~ey~k~~~~~pale~--~~~~~~v~i~~~sl~~ 386 (854)
++|+.+--.. .....|.. .++|..++|.=|+|..
T Consensus 368 aat~~~L~~~--v~~g~Fr~dL~yrL~~~~I~lPPLRe 403 (538)
T PRK15424 368 SATHCDLEED--VRQGRFRRDLFYRLSILRLQLPPLRE 403 (538)
T ss_pred EecCCCHHHH--HhcccchHHHHHHhcCCeecCCChhh
Confidence 9997653211 23334433 1367666666555543
No 425
>PRK04296 thymidine kinase; Provisional
Probab=96.65 E-value=0.0098 Score=61.13 Aligned_cols=97 Identities=14% Similarity=0.025 Sum_probs=52.4
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCcccccccccc-CC-CC-CCchHHHHHHHH--HcCCC
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRS-RD-EQ-SCSYIERFAEAV--SNNPH 733 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl-~~-~~-g~g~~e~L~eav--~~~p~ 733 (854)
..++.||+|+|||+++..++..+-+.....+.+.. .+.. +. . +....+++ +. +. .....+.+...+ ....+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~-~~d~-~~-~-~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP-AIDD-RY-G-EGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKI 79 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec-cccc-cc-c-CCcEecCCCCcccceEeCChHHHHHHHHhhCCCC
Confidence 56889999999999998888766555556555532 1110 00 0 11111111 00 00 011112333333 34567
Q ss_pred EEEEEecCCCCCHH-HHHHHHHhhhcC
Q 003038 734 RVFLIEDVEQADYC-SQKGFKRAIESG 759 (854)
Q Consensus 734 ~ViliDEieka~~~-v~~~Ll~~le~G 759 (854)
.||+|||+..++.+ +...+..+-+.|
T Consensus 80 dvviIDEaq~l~~~~v~~l~~~l~~~g 106 (190)
T PRK04296 80 DCVLIDEAQFLDKEQVVQLAEVLDDLG 106 (190)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHHcC
Confidence 89999999998776 544443334445
No 426
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.63 E-value=0.0081 Score=75.94 Aligned_cols=107 Identities=19% Similarity=0.237 Sum_probs=83.4
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCC-----CCCC-chHH-HHHHHHHcC
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRD-----EQSC-SYIE-RFAEAVSNN 731 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~-----~~g~-g~~e-~L~eav~~~ 731 (854)
.+++.|+.|.|||.|..+|+..+ | ..+|+|+.++.++ .. -+++ .||- -|.. .|++++..
T Consensus 151 pI~l~g~~gsgksfLisel~~~~-G--~~iV~Ihl~e~TD-------ak---~LiGtYts~KpG~fEw~~GvL~~avv~- 216 (4600)
T COG5271 151 PIYLEGGRGSGKSFLISELCDEG-G--QRIVEIHLREITD-------AK---VLIGTYTSPKPGDFEWMKGVLIEAVVS- 216 (4600)
T ss_pred ceEEecCccccHHHHHHHHHHHh-C--ceEEEEecccccC-------ch---heeeeccCCCCCceeeccchhhhhhhc-
Confidence 57899999999999999999988 4 7899999998773 21 1221 1221 2211 58888765
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHhhhcCeEec-CCCceeecCCeEEEEec
Q 003038 732 PHRVFLIEDVEQADYCSQKGFKRAIESGRIVT-SSGDEVSLGDAIVILSC 780 (854)
Q Consensus 732 p~~ViliDEieka~~~v~~~Ll~~le~G~l~d-~~G~~v~~~~aIiIlTs 780 (854)
.+-|+|.+|||++.+|...|+..++..+++. ++|++|--.+..=||.+
T Consensus 217 -G~WILf~~Idkap~~vLs~Ll~llekR~L~ipsrGEtV~A~~~Fqif~T 265 (4600)
T COG5271 217 -GDWILFKRIDKAPHGVLSYLLTLLEKRRLLIPSRGETVLAHDNFQIFFT 265 (4600)
T ss_pred -CcEEEEeecccCchhHHHHHHHHHHhhhhccCCCCceEEecCCEEEEEe
Confidence 4589999999999999999999999999998 78999988776655544
No 427
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.61 E-value=0.016 Score=67.53 Aligned_cols=43 Identities=12% Similarity=0.088 Sum_probs=32.0
Q ss_pred cHHHHHHHHHHhhccCc-CCceeecCCCCCHHHHHHHHHHHHHc
Q 003038 211 RNEDVMYVIENLMSKRK-RNFVVVGECLASIEGVVRGVIDKIEK 253 (854)
Q Consensus 211 r~~ei~~v~~~L~r~~k-~n~vLvGe~GvGKta~v~~la~~i~~ 253 (854)
.+.-+..+...+.+++- +..+|+||||+|||++++.+|+.+..
T Consensus 22 q~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 22 QDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNC 65 (451)
T ss_pred cHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 34445555656655443 44789999999999999999999865
No 428
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.59 E-value=0.012 Score=60.15 Aligned_cols=93 Identities=11% Similarity=0.176 Sum_probs=58.2
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcc-ccccCcCCCccccccccccC-CC------CCCchHHHHHHHHH
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIAL-SSFSSTRADSTEDSRNKRSR-DE------QSCSYIERFAEAVS 729 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~-s~~~~~~~~s~e~~~~~rl~-~~------~g~g~~e~L~eav~ 729 (854)
..++|.||+|+|||++.++|...+.. ....+.+.- .++.. . ....+ .+. .+ +...+.+.+..++|
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~-~~~~i~ied~~E~~~----~-~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~lR 98 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPP-DERIITIEDTAELQL----P-HPNWV-RLVTRPGNVEGSGEVTMADLLRSALR 98 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCC-CCCEEEECCccccCC----C-CCCEE-EEEEecCCCCCCCccCHHHHHHHHhc
Confidence 48999999999999999999998753 345555532 12220 0 01100 111 01 11245556777788
Q ss_pred cCCCEEEEEecCCCCCHHHHHHHHHhhhcCeE
Q 003038 730 NNPHRVFLIEDVEQADYCSQKGFKRAIESGRI 761 (854)
Q Consensus 730 ~~p~~ViliDEieka~~~v~~~Ll~~le~G~l 761 (854)
.+| .+|++.||- +++... +++++..|..
T Consensus 99 ~~p-d~i~igEir--~~ea~~-~~~a~~tGh~ 126 (186)
T cd01130 99 MRP-DRIIVGEVR--GGEALD-LLQAMNTGHP 126 (186)
T ss_pred cCC-CEEEEEccC--cHHHHH-HHHHHhcCCC
Confidence 887 778899998 466654 6778887743
No 429
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.58 E-value=0.0039 Score=60.73 Aligned_cols=90 Identities=19% Similarity=0.286 Sum_probs=58.5
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCC-chHHHHHHHHHcCCCEEE
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSC-SYIERFAEAVSNNPHRVF 736 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~-g~~e~L~eav~~~p~~Vi 736 (854)
..+|+.|-||+|||++|..||+.. .|..|++|.+.. +.+ -| ||++ .|.--
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~-----~~~~i~isd~vk------En~---------l~~gyDE---------~y~c~ 58 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKT-----GLEYIEISDLVK------ENN---------LYEGYDE---------EYKCH 58 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHh-----CCceEehhhHHh------hhc---------chhcccc---------cccCc
Confidence 479999999999999999999765 577888887761 111 12 5533 23344
Q ss_pred EEecCCCCCHHHHHHHHHhhhc-CeEecCCCce-ee--cCCeEEEEecC
Q 003038 737 LIEDVEQADYCSQKGFKRAIES-GRIVTSSGDE-VS--LGDAIVILSCE 781 (854)
Q Consensus 737 liDEieka~~~v~~~Ll~~le~-G~l~d~~G~~-v~--~~~aIiIlTsn 781 (854)
+||| ..+.+.|-..|.+ |.+.|-+|=. +. .=+.+|||+|.
T Consensus 59 i~DE-----dkv~D~Le~~m~~Gg~IVDyHgCd~FperwfdlVvVLr~~ 102 (176)
T KOG3347|consen 59 ILDE-----DKVLDELEPLMIEGGNIVDYHGCDFFPERWFDLVVVLRTP 102 (176)
T ss_pred cccH-----HHHHHHHHHHHhcCCcEEeecccCccchhheeEEEEEecC
Confidence 5665 3456666655554 6777766521 11 22678999883
No 430
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.54 E-value=0.011 Score=69.95 Aligned_cols=57 Identities=14% Similarity=0.170 Sum_probs=41.1
Q ss_pred cHHHHHHHHHHhhc--cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccccccc
Q 003038 211 RNEDVMYVIENLMS--KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFR 274 (854)
Q Consensus 211 r~~ei~~v~~~L~r--~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~ 274 (854)
+...++++.+-+.+ ....+++|+||+|||||.+++.+-..-.+ .+..|+.+++..+-
T Consensus 192 ~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r-------~~~p~v~v~c~~~~ 250 (509)
T PRK05022 192 QSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPR-------ADKPLVYLNCAALP 250 (509)
T ss_pred cCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCc-------CCCCeEEEEcccCC
Confidence 55556555555443 36778899999999999999998865221 45588999887663
No 431
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.54 E-value=0.01 Score=67.18 Aligned_cols=98 Identities=11% Similarity=0.106 Sum_probs=64.9
Q ss_pred ceeEEEecCCCchHHHHHHHHHHHHhC--CCCceEEEcc-ccccCcCCCccccccc----cccCCCCCCchHHHHHHHHH
Q 003038 657 ETWLFFQGVDADAKEKIAKELARLVFG--SHNNFVSIAL-SSFSSTRADSTEDSRN----KRSRDEQSCSYIERFAEAVS 729 (854)
Q Consensus 657 ~~~lLf~Gp~GvGKt~lAr~LA~~lfg--~~~~~i~id~-s~~~~~~~~s~e~~~~----~rl~~~~g~g~~e~L~eav~ 729 (854)
.+.+++.||+|+|||++.++|.+.+-. ...+++.+.- .||.-.+ .+.+ .+-++.....|.+-+..++|
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~-----~~~~~~~~q~evg~~~~~~~~~l~~aLR 223 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGS-----PDDLLPPAQSQIGRDVDSFANGIRLALR 223 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCC-----CceeecccccccCCCccCHHHHHHHhhc
Confidence 357899999999999999999988742 2345666632 2333100 0111 01111111156567788888
Q ss_pred cCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEe
Q 003038 730 NNPHRVFLIEDVEQADYCSQKGFKRAIESGRIV 762 (854)
Q Consensus 730 ~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~ 762 (854)
.+| .+|++.|+- +++.....+++...|...
T Consensus 224 ~~P-D~I~vGEiR--d~et~~~al~aa~TGH~v 253 (372)
T TIGR02525 224 RAP-KIIGVGEIR--DLETFQAAVLAGQSGHFC 253 (372)
T ss_pred cCC-CEEeeCCCC--CHHHHHHHHHHHhcCCcE
Confidence 888 788899999 778888889999998654
No 432
>PF05729 NACHT: NACHT domain
Probab=96.49 E-value=0.0085 Score=58.82 Aligned_cols=119 Identities=13% Similarity=0.113 Sum_probs=62.7
Q ss_pred CceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccc------------cchHHHHHHHHHHHHHHHhhh
Q 003038 229 NFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRH------------MNRVEVEQRVEEIKNLVRSCL 296 (854)
Q Consensus 229 n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~------------~~rge~E~rl~~l~~~~~~~~ 296 (854)
-++|+|+||+|||++++.++..+..+.-+..- -.-++.+.+..+.. ....+....+...+..+...
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~- 79 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSK-FPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEK- 79 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCccccc-ceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHc-
Confidence 36899999999999999999999887643211 12233333322211 00011111111122222222
Q ss_pred CCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhccc-CCCCceEEEEEecCHHHHHH
Q 003038 297 GRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG-IGENARFWLMGIATFQSYMR 360 (854)
Q Consensus 297 ~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~g~g~l~lIgatT~~ey~k 360 (854)
.+.++|+||.++-+ +..... + . .....-+..++.. ... .+.+|-++++..+..
T Consensus 80 ~~~~llilDglDE~~~~~~~~--~----~---~~~~~~l~~l~~~~~~~--~~~liit~r~~~~~~ 134 (166)
T PF05729_consen 80 NKRVLLILDGLDELEEQDQSQ--E----R---QRLLDLLSQLLPQALPP--GVKLIITSRPRAFPD 134 (166)
T ss_pred CCceEEEEechHhcccchhhh--H----H---HHHHHHHHHHhhhccCC--CCeEEEEEcCChHHH
Confidence 56899999999988 533210 0 0 0122235556632 112 377777777666544
No 433
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.46 E-value=0.0075 Score=68.37 Aligned_cols=38 Identities=11% Similarity=0.152 Sum_probs=30.1
Q ss_pred HHHHHhhc-cCcCCceeecCCCCCHHHHHHHHHHHHHcC
Q 003038 217 YVIENLMS-KRKRNFVVVGECLASIEGVVRGVIDKIEKG 254 (854)
Q Consensus 217 ~v~~~L~r-~~k~n~vLvGe~GvGKta~v~~la~~i~~~ 254 (854)
|+|+++.. .+....+||||||+|||++++.++..+..+
T Consensus 157 R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 157 RVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred eeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhccc
Confidence 45566543 366679999999999999999999987654
No 434
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=96.45 E-value=0.0055 Score=63.64 Aligned_cols=102 Identities=16% Similarity=0.155 Sum_probs=53.6
Q ss_pred ceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcc-ccccCcCCCcc-----cccc----ccccCCCC----------
Q 003038 657 ETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIAL-SSFSSTRADST-----EDSR----NKRSRDEQ---------- 716 (854)
Q Consensus 657 ~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~-s~~~~~~~~s~-----e~~~----~~rl~~~~---------- 716 (854)
...++++||.|+|||.+.+.+.+.+-......+.++. ........... .... ....+...
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 3478899999999999999999887222111222221 11100000000 0000 00000000
Q ss_pred --CCchHHHHHHHHHcCC-CEEEEEecCCCCC------HHHHHHHHHhhhc
Q 003038 717 --SCSYIERFAEAVSNNP-HRVFLIEDVEQAD------YCSQKGFKRAIES 758 (854)
Q Consensus 717 --g~g~~e~L~eav~~~p-~~ViliDEieka~------~~v~~~Ll~~le~ 758 (854)
.......+.+.+.+.. .-||+|||++.+. +.....|...++.
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~ 150 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDS 150 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhh
Confidence 0011235666665543 4899999999988 5677777777775
No 435
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=96.44 E-value=0.014 Score=69.13 Aligned_cols=139 Identities=12% Similarity=0.125 Sum_probs=77.2
Q ss_pred HHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccc--------c-chHHHHH--
Q 003038 215 VMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRH--------M-NRVEVEQ-- 283 (854)
Q Consensus 215 i~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~--------~-~rge~E~-- 283 (854)
+++.++-++ +...+++|.||+|+||+.+|+.+-..- .-++..|+.++++.+-. | ..|.|..
T Consensus 224 ~~~~i~~~A-~~~~pVLI~GE~GTGKe~lA~~IH~~S-------~r~~~pfv~inC~~l~e~lleseLFG~~~gaftga~ 295 (526)
T TIGR02329 224 VRALVRLYA-RSDATVLILGESGTGKELVAQAIHQLS-------GRRDFPFVAINCGAIAESLLEAELFGYEEGAFTGAR 295 (526)
T ss_pred HHHHHHHHh-CCCCcEEEECCCCcCHHHHHHHHHHhc-------CcCCCCEEEeccccCChhHHHHHhcCCccccccccc
Confidence 333444444 367799999999999999999886531 12456899999887632 1 0111110
Q ss_pred --HHHHHHHHHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhccc-----CCCC----ceEEEEE
Q 003038 284 --RVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG-----IGEN----ARFWLMG 351 (854)
Q Consensus 284 --rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-----~~g~----g~l~lIg 351 (854)
.-..+++.+ .+| .||||||+.+ .... ..+.++|.. -++. -++++|+
T Consensus 296 ~~~~~Gl~e~A----~gG-TLfLdeI~~Lp~~~Q-----------------~~Ll~~L~~~~~~r~g~~~~~~~dvRiIa 353 (526)
T TIGR02329 296 RGGRTGLIEAA----HRG-TLFLDEIGEMPLPLQ-----------------TRLLRVLEEREVVRVGGTEPVPVDVRVVA 353 (526)
T ss_pred ccccccchhhc----CCc-eEEecChHhCCHHHH-----------------HHHHHHHhcCcEEecCCCceeeecceEEe
Confidence 011222222 123 5999999999 4322 234444421 0111 1469999
Q ss_pred ecCHHHHHHhhccCCchhh-h-hccCCCCCCCchHH
Q 003038 352 IATFQSYMRCKSGHPSLET-L-WSLHPLTIPAGSLS 385 (854)
Q Consensus 352 atT~~ey~k~~~~~pale~-~-~~~~~v~i~~~sl~ 385 (854)
+|+.+--.. .....|.. + ++|..++|.=|.|.
T Consensus 354 at~~~l~~~--v~~g~fr~dL~~rL~~~~I~lPPLR 387 (526)
T TIGR02329 354 ATHCALTTA--VQQGRFRRDLFYRLSILRIALPPLR 387 (526)
T ss_pred ccCCCHHHH--hhhcchhHHHHHhcCCcEEeCCCch
Confidence 998654322 23344443 1 36666666555543
No 436
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=96.44 E-value=0.0019 Score=75.01 Aligned_cols=147 Identities=18% Similarity=0.243 Sum_probs=91.6
Q ss_pred HhhcCcccccHHHHHHHHHHHHHhhcCCCc-ccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHH----HhCCCCce
Q 003038 614 NALEKKVPWQKDTVYDIANTVLKCRSGTMR-RKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARL----VFGSHNNF 688 (854)
Q Consensus 614 ~~L~~~V~GQ~~av~~Ia~~v~~~rsgl~~-~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~----lfg~~~~~ 688 (854)
.-+.-.|+|+..+..+||-++... ..+ +.++ .+-|....+|++|.||+||+..-|-.++. +|-....-
T Consensus 445 aSiaPsIyGh~~VK~AvAlaLfGG---v~kn~~~k----hkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGA 517 (854)
T KOG0477|consen 445 ASIAPSIYGHEDVKRAVALALFGG---VPKNPGGK----HKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGA 517 (854)
T ss_pred HhhCchhhchHHHHHHHHHHHhcC---CccCCCCC----ceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCc
Confidence 344556899999999999998763 322 1110 11255569999999999999998877753 33221111
Q ss_pred EEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCC-Cc
Q 003038 689 VSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSS-GD 767 (854)
Q Consensus 689 i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~-G~ 767 (854)
-.+.++.|. .++.+.+-| .. =.+|+--.-..|-+|||+|||..+=...+-.+||.-.|.-++ |-
T Consensus 518 SavGLTa~v-------~KdPvtrEW-----TL---EaGALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGI 582 (854)
T KOG0477|consen 518 SAVGLTAYV-------RKDPVTREW-----TL---EAGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGI 582 (854)
T ss_pred cccceeEEE-------eeCCcccee-----ee---ccCeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhH
Confidence 112222222 233333322 00 011222234579999999999999999999999987776554 44
Q ss_pred eeec-CCeEEEEecCC
Q 003038 768 EVSL-GDAIVILSCES 782 (854)
Q Consensus 768 ~v~~-~~aIiIlTsn~ 782 (854)
..++ ..|-+|.++|.
T Consensus 583 VtsLqArctvIAAanP 598 (854)
T KOG0477|consen 583 VTSLQARCTVIAAANP 598 (854)
T ss_pred HHHHHhhhhhheecCC
Confidence 4444 36778888885
No 437
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.44 E-value=0.01 Score=61.31 Aligned_cols=98 Identities=11% Similarity=0.072 Sum_probs=53.2
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCc---CCCccccccccccCCCCCCchHHHHHHHHHcCCCE
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSST---RADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHR 734 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~---~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ 734 (854)
...++.||+|+|||++.+.+++.+-.....++-+..+.-... .........+.+++.....+.. .......++.
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~---~~~~~~~~~~ 95 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDD---EGRPELPKKD 95 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEEC---CSSCC-TSTS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccc---cccccCCccc
Confidence 367889999999999999999988766556555544321100 0000000011111100000000 0000024567
Q ss_pred EEEEecCCCCCHHHHHHHHHhhhc
Q 003038 735 VFLIEDVEQADYCSQKGFKRAIES 758 (854)
Q Consensus 735 ViliDEieka~~~v~~~Ll~~le~ 758 (854)
||++||+-.++......|++.+..
T Consensus 96 vliVDEasmv~~~~~~~ll~~~~~ 119 (196)
T PF13604_consen 96 VLIVDEASMVDSRQLARLLRLAKK 119 (196)
T ss_dssp EEEESSGGG-BHHHHHHHHHHS-T
T ss_pred EEEEecccccCHHHHHHHHHHHHh
Confidence 999999999999999999998875
No 438
>PRK14974 cell division protein FtsY; Provisional
Probab=96.42 E-value=0.042 Score=61.53 Aligned_cols=98 Identities=16% Similarity=0.157 Sum_probs=55.8
Q ss_pred ceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccc--ccccc-C--CCCCCch--HHHHHHHH-
Q 003038 657 ETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDS--RNKRS-R--DEQSCSY--IERFAEAV- 728 (854)
Q Consensus 657 ~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~--~~~rl-~--~~~g~g~--~e~L~eav- 728 (854)
...++|.||+|+|||+++..||..+-.....+..+++..|.. ...++. ...++ + ....+|. ...+.+++
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~---~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~ 216 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRA---GAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIE 216 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcH---HHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHH
Confidence 358999999999999999999987754444555565554431 000110 00011 0 0111111 12233433
Q ss_pred --HcCCCEEEEEecCCCCC--HHHHHHHHHhhh
Q 003038 729 --SNNPHRVFLIEDVEQAD--YCSQKGFKRAIE 757 (854)
Q Consensus 729 --~~~p~~ViliDEieka~--~~v~~~Ll~~le 757 (854)
+...+.|||||..-.++ ......|..+.+
T Consensus 217 ~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~ 249 (336)
T PRK14974 217 HAKARGIDVVLIDTAGRMHTDANLMDELKKIVR 249 (336)
T ss_pred HHHhCCCCEEEEECCCccCCcHHHHHHHHHHHH
Confidence 34567899999999985 455566655543
No 439
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=96.42 E-value=0.015 Score=62.99 Aligned_cols=106 Identities=14% Similarity=0.226 Sum_probs=56.7
Q ss_pred cceeEEEecCCCchHHHHHHHHHHH--HhCCCCceEEEccccccCcCCCccccc---cccccCCCC------CCchH---
Q 003038 656 EETWLFFQGVDADAKEKIAKELARL--VFGSHNNFVSIALSSFSSTRADSTEDS---RNKRSRDEQ------SCSYI--- 721 (854)
Q Consensus 656 p~~~lLf~Gp~GvGKt~lAr~LA~~--lfg~~~~~i~id~s~~~~~~~~s~e~~---~~~rl~~~~------g~g~~--- 721 (854)
+...+.++|+.|+|||.||+.+++. +-......+-++.+.... ... .+.+.+... .....
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~------~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 91 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPS------LEQLLEQILRQLGEPDSSISDPKDIEELQ 91 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SC------CHHHHHHHHHHHTCC-STSSCCSSHHHHH
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccc------ccccccccccccccccccccccccccccc
Confidence 3568999999999999999999977 434444556666654331 111 111111111 11122
Q ss_pred HHHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeecCCeEEEEecC
Q 003038 722 ERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDAIVILSCE 781 (854)
Q Consensus 722 e~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn 781 (854)
+.|.+.++.+ ..+|+||+|+... ....|...+-.+ -.++-||+||.
T Consensus 92 ~~l~~~L~~~-~~LlVlDdv~~~~--~~~~l~~~~~~~-----------~~~~kilvTTR 137 (287)
T PF00931_consen 92 DQLRELLKDK-RCLLVLDDVWDEE--DLEELREPLPSF-----------SSGSKILVTTR 137 (287)
T ss_dssp HHHHHHHCCT-SEEEEEEEE-SHH--HH-------HCH-----------HSS-EEEEEES
T ss_pred ccchhhhccc-cceeeeeeecccc--cccccccccccc-----------ccccccccccc
Confidence 2566666666 7999999998544 333343333210 12456788885
No 440
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.41 E-value=0.013 Score=70.57 Aligned_cols=41 Identities=12% Similarity=0.167 Sum_probs=28.3
Q ss_pred cHHHHHHHHHHhhcc-----CcCCceeecCCCCCHHHHHHHHHHHH
Q 003038 211 RNEDVMYVIENLMSK-----RKRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 211 r~~ei~~v~~~L~r~-----~k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
-++.|..|...|... .++-.+|+||||+|||++++.+|..+
T Consensus 89 ~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 89 HKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred cHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 344455555444322 22338999999999999999999765
No 441
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=96.41 E-value=0.012 Score=70.76 Aligned_cols=137 Identities=16% Similarity=0.158 Sum_probs=81.1
Q ss_pred HHHHHhhcCcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceE
Q 003038 610 TSLCNALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFV 689 (854)
Q Consensus 610 ~~L~~~L~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i 689 (854)
..|-+.+.-.|.|++++.++|+-.+.- |..+.-..+ ..-|...++|+.|.||+||+.|-|-+++..- .-+
T Consensus 278 ~~l~~SiaPsIyG~e~VKkAilLqLfg---Gv~k~~~~g---~~iRGDInILLvGDPgtaKSqlLk~v~~~aP----r~v 347 (682)
T COG1241 278 DILIKSIAPSIYGHEDVKKAILLQLFG---GVKKNLPDG---TRIRGDIHILLVGDPGTAKSQLLKYVAKLAP----RGV 347 (682)
T ss_pred HHHHHHhcccccCcHHHHHHHHHHhcC---CCcccCCCC---cccccceeEEEcCCCchhHHHHHHHHHhhCC----ceE
Confidence 345556677899999988877655543 433311100 1125567999999999999999999987651 112
Q ss_pred EEccccccCcCCCccccccccccCCCC-C-CchHHHHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCC
Q 003038 690 SIALSSFSSTRADSTEDSRNKRSRDEQ-S-CSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSS 765 (854)
Q Consensus 690 ~id~s~~~~~~~~s~e~~~~~rl~~~~-g-~g~~e~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~ 765 (854)
+.....-+ ...-...-..++. | | +.+ .+|+--.-..|..|||+|||+..-+++|..+||...++-++
T Consensus 348 ytsgkgss------~~GLTAav~rd~~tge~-~Le--aGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaK 416 (682)
T COG1241 348 YTSGKGSS------AAGLTAAVVRDKVTGEW-VLE--AGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAK 416 (682)
T ss_pred EEcccccc------ccCceeEEEEccCCCeE-EEe--CCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecc
Confidence 22211101 0000000000100 0 0 000 12233334679999999999999999999999998777543
No 442
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.39 E-value=0.0018 Score=65.84 Aligned_cols=64 Identities=14% Similarity=0.253 Sum_probs=41.4
Q ss_pred CCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeCcc
Q 003038 228 RNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLGDL 307 (854)
Q Consensus 228 ~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfidel 307 (854)
.+++|+|+||+||||+++.||+++ .+..+|.+.+ +|+.+.++ .++..+++....++- |+.|++
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~------------~i~hlstgd~---~r~~~~~~-t~lg~~~k~~i~~g~-lv~d~i 63 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKL------------GLPHLDTGDI---LRAAIAER-TELGEEIKKYIDKGE-LVPDEI 63 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh------------CCcEEcHhHH---hHhhhccC-ChHHHHHHHHHHcCC-ccchHH
Confidence 368999999999999999999873 4555654433 45555555 555555554322222 666665
Q ss_pred c
Q 003038 308 E 308 (854)
Q Consensus 308 ~ 308 (854)
.
T Consensus 64 ~ 64 (178)
T COG0563 64 V 64 (178)
T ss_pred H
Confidence 3
No 443
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.37 E-value=0.062 Score=62.27 Aligned_cols=69 Identities=12% Similarity=0.096 Sum_probs=44.0
Q ss_pred cHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 623 QKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 623 Q~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
++.+++.|...+.....+...+.. ...+...++|+|++|+|||+++..||..+-.....+..+++..|.
T Consensus 67 ~~~~~~~v~~~L~~~l~~~~~~~~------~~~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R 135 (437)
T PRK00771 67 REHVIKIVYEELVKLLGEETEPLV------LPLKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYR 135 (437)
T ss_pred HHHHHHHHHHHHHHHhCCCccccc------cCCCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCC
Confidence 345566666666554332211100 012346899999999999999999998775444566667776664
No 444
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=96.33 E-value=0.0076 Score=69.02 Aligned_cols=143 Identities=10% Similarity=0.139 Sum_probs=81.2
Q ss_pred cHHHHHHHHHHhh--ccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccc--------c-chH
Q 003038 211 RNEDVMYVIENLM--SKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRH--------M-NRV 279 (854)
Q Consensus 211 r~~ei~~v~~~L~--r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~--------~-~rg 279 (854)
+-..++++++... -++.-+++|.||+||||+-+++++=+.=-+ ++..||.+++++|-. | .+|
T Consensus 228 ~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R-------~~kPfV~~NCAAlPesLlESELFGHeKG 300 (550)
T COG3604 228 RSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPR-------RDKPFVKLNCAALPESLLESELFGHEKG 300 (550)
T ss_pred cCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCcc-------cCCCceeeeccccchHHHHHHHhccccc
Confidence 4445555544422 257788999999999999999988765222 567899999987743 2 334
Q ss_pred HHHHHHHHHHHHHHhhhCCCeEEEeCccccc--cccccccccccccchhhhHHHHHHHhhccc---C--CCC----ceEE
Q 003038 280 EVEQRVEEIKNLVRSCLGRGIVLNLGDLEWA--EFRASSSEQVRGYYCSIEHIIMEIGKLVCG---I--GEN----ARFW 348 (854)
Q Consensus 280 e~E~rl~~l~~~~~~~~~~~~ILfidel~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~---~--~g~----g~l~ 348 (854)
-|---...=....+-. .+| =||+|||--+ ... ..+-+.|.. . +|+ =+++
T Consensus 301 AFTGA~~~r~GrFElA-dGG-TLFLDEIGelPL~lQ------------------aKLLRvLQegEieRvG~~r~ikVDVR 360 (550)
T COG3604 301 AFTGAINTRRGRFELA-DGG-TLFLDEIGELPLALQ------------------AKLLRVLQEGEIERVGGDRTIKVDVR 360 (550)
T ss_pred ccccchhccCcceeec-CCC-eEechhhccCCHHHH------------------HHHHHHHhhcceeecCCCceeEEEEE
Confidence 3332221111111111 234 5999999766 221 123333311 1 221 1699
Q ss_pred EEEecCHHHHHHhhccCCchhhh--hccCCCCCCCc
Q 003038 349 LMGIATFQSYMRCKSGHPSLETL--WSLHPLTIPAG 382 (854)
Q Consensus 349 lIgatT~~ey~k~~~~~pale~~--~~~~~v~i~~~ 382 (854)
+|+||+-+=.+. ..+..|..+ +|+..++|.-|
T Consensus 361 iIAATNRDL~~~--V~~G~FRaDLYyRLsV~Pl~lP 394 (550)
T COG3604 361 VIAATNRDLEEM--VRDGEFRADLYYRLSVFPLELP 394 (550)
T ss_pred EEeccchhHHHH--HHcCcchhhhhhcccccccCCC
Confidence 999999765443 456666542 46655555433
No 445
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.32 E-value=0.016 Score=64.35 Aligned_cols=93 Identities=9% Similarity=0.127 Sum_probs=60.4
Q ss_pred eeEEEecCCCchHHHHHHHHHHHH--hCCCCceEEEc-cccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCE
Q 003038 658 TWLFFQGVDADAKEKIAKELARLV--FGSHNNFVSIA-LSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHR 734 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~l--fg~~~~~i~id-~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ 734 (854)
.++++.|++|+|||+++++|+..+ +....+++.+. ..++.-. .+.. ..+......++.+-+..++|.+| .
T Consensus 149 ~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~-----~~~~-v~~~~~~~~~~~~ll~~aLR~~P-D 221 (319)
T PRK13894 149 RNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCA-----AENY-VQYHTSIDVNMTALLKTTLRMRP-D 221 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccC-----CCCE-EEEecCCCCCHHHHHHHHhcCCC-C
Confidence 479999999999999999999875 23445566553 3333310 0001 11111223366667788888888 5
Q ss_pred EEEEecCCCCCHHHHHHHHHhhhcCe
Q 003038 735 VFLIEDVEQADYCSQKGFKRAIESGR 760 (854)
Q Consensus 735 ViliDEieka~~~v~~~Ll~~le~G~ 760 (854)
+|++.||- +++... +++++..|.
T Consensus 222 ~IivGEiR--~~Ea~~-~l~A~~tGh 244 (319)
T PRK13894 222 RILVGEVR--GPEALD-LLMAWNTGH 244 (319)
T ss_pred EEEEeccC--CHHHHH-HHHHHHcCC
Confidence 57799998 456654 689999874
No 446
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=96.31 E-value=0.013 Score=70.30 Aligned_cols=108 Identities=8% Similarity=0.091 Sum_probs=72.1
Q ss_pred ceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCchHHHH--------HHHH
Q 003038 657 ETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERF--------AEAV 728 (854)
Q Consensus 657 ~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L--------~eav 728 (854)
+|=+++.|+.|+||+.+++.|+.+|- ...+|+.+-.+-- ..+++++- .....| ...|
T Consensus 25 ~gGv~i~g~~G~~ks~~~r~l~~llp-~~~p~r~~p~~~t------------~~~L~Gg~--Dl~~~l~~g~~~~~pGll 89 (584)
T PRK13406 25 LGGVVLRARAGPVRDRWLAALRALLP-AGTPLRRLPPGIA------------DDRLLGGL--DLAATLRAGRPVAQRGLL 89 (584)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhcC-CCCCcccCCCCCc------------HHHccCCc--hHHhHhhcCCcCCCCCce
Confidence 56789999999999999999999883 2345554433211 11222110 000000 1123
Q ss_pred HcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecC-CCceeecC-CeEEEEe
Q 003038 729 SNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTS-SGDEVSLG-DAIVILS 779 (854)
Q Consensus 729 ~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~-~G~~v~~~-~aIiIlT 779 (854)
....+.|+|+||+..+++.+++.|+++|++|.++-. .|..+.+. +-++|.|
T Consensus 90 a~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat 142 (584)
T PRK13406 90 AEADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVAL 142 (584)
T ss_pred eeccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEec
Confidence 344568999999999999999999999999999863 56777774 4455555
No 447
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.28 E-value=0.075 Score=61.21 Aligned_cols=99 Identities=8% Similarity=0.103 Sum_probs=56.0
Q ss_pred CcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCcccccc-ccccCCCCCC------chHHHH---
Q 003038 655 KEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSR-NKRSRDEQSC------SYIERF--- 724 (854)
Q Consensus 655 kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~-~~rl~~~~g~------g~~e~L--- 724 (854)
++.+.++|+|++|+|||+++..||..+-.......-+++..|... ..+... ..+...-|.+ ......
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~a---A~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~ 174 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAG---AFDQLKQNATKARIPFYGSYTESDPVKIASEG 174 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchh---HHHHHHHHhhccCCeEEeecCCCCHHHHHHHH
Confidence 345799999999999999999999877544456666676655410 001100 0000110101 111111
Q ss_pred HHHHHcCCCEEEEEecCCCCCHH--HHHHHHHhh
Q 003038 725 AEAVSNNPHRVFLIEDVEQADYC--SQKGFKRAI 756 (854)
Q Consensus 725 ~eav~~~p~~ViliDEieka~~~--v~~~Ll~~l 756 (854)
.+.++...+.+||+|=.-+.+.+ ....|.++.
T Consensus 175 l~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~ 208 (429)
T TIGR01425 175 VEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVA 208 (429)
T ss_pred HHHHHhCCCCEEEEECCCCCcchHHHHHHHHHHh
Confidence 22234467899999998877653 444444443
No 448
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.28 E-value=0.037 Score=66.78 Aligned_cols=41 Identities=12% Similarity=0.131 Sum_probs=29.3
Q ss_pred HHHHH-HHHHhhccCcCC-ceeecCCCCCHHHHHHHHHHHHHc
Q 003038 213 EDVMY-VIENLMSKRKRN-FVVVGECLASIEGVVRGVIDKIEK 253 (854)
Q Consensus 213 ~ei~~-v~~~L~r~~k~n-~vLvGe~GvGKta~v~~la~~i~~ 253 (854)
+.+.. +...+..++-.+ .||+||+|||||++++.+|+.+..
T Consensus 22 e~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 22 EHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred HHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 44333 333344334444 789999999999999999999865
No 449
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.24 E-value=0.019 Score=56.85 Aligned_cols=96 Identities=15% Similarity=0.187 Sum_probs=56.1
Q ss_pred ceeEEEecCCCchHHHHHHHHHHHHhCCC-----------------CceEEEccccccCcCCCccccccccc-----c-C
Q 003038 657 ETWLFFQGVDADAKEKIAKELARLVFGSH-----------------NNFVSIALSSFSSTRADSTEDSRNKR-----S-R 713 (854)
Q Consensus 657 ~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~-----------------~~~i~id~s~~~~~~~~s~e~~~~~r-----l-~ 713 (854)
...+++.|+||+|||++++-||+.|-... --|--+|...- +...+.+ . +
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg--------~~~~la~~~~~~~rv 76 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATG--------EEGILARVGFSRPRV 76 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCC--------ceEEEEEcCCCCccc
Confidence 34789999999999999999998885331 11122222211 1111111 1 1
Q ss_pred CCCCC---chHHHHHHHHHc--CCCEEEEEecCCCC---CHHHHHHHHHhhhcCe
Q 003038 714 DEQSC---SYIERFAEAVSN--NPHRVFLIEDVEQA---DYCSQKGFKRAIESGR 760 (854)
Q Consensus 714 ~~~g~---g~~e~L~eav~~--~p~~ViliDEieka---~~~v~~~Ll~~le~G~ 760 (854)
+.++- ++.+....++++ ..-.||+||||-+| .+.+...+-++|+++.
T Consensus 77 GkY~V~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~k 131 (179)
T COG1618 77 GKYGVNVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGK 131 (179)
T ss_pred ceEEeeHHHHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCC
Confidence 11111 122234556654 22479999999988 4667777888887664
No 450
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.23 E-value=0.048 Score=59.37 Aligned_cols=70 Identities=14% Similarity=0.043 Sum_probs=45.3
Q ss_pred cHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 623 QKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 623 Q~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
+..+...+.+.+.........+-. ...++...++|+||+|+|||+++.-||..+-.....+.-+++..|.
T Consensus 43 ~~~~~~~~~e~l~~~~~~~~~~~~-----~~~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r 112 (272)
T TIGR00064 43 AELLKEILKEYLKEILKETDLELI-----VEENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFR 112 (272)
T ss_pred HHHHHHHHHHHHHHHHcccchhhc-----ccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence 455666666766665443211100 0123456889999999999999999998775555566667776553
No 451
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.20 E-value=0.038 Score=61.81 Aligned_cols=116 Identities=9% Similarity=0.123 Sum_probs=0.0
Q ss_pred ccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEE-ccccccC
Q 003038 620 VPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSI-ALSSFSS 698 (854)
Q Consensus 620 V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~i-d~s~~~~ 698 (854)
.+.+.+...-+..+|.. ...+++.|++|+|||++.++|...+ ....+++.+ |-.|+.-
T Consensus 143 ~~~~~~~~~~L~~~v~~--------------------~~nili~G~tgSGKTTll~aL~~~i-p~~~ri~tiEd~~El~l 201 (332)
T PRK13900 143 LLAEKKIKEFLEHAVIS--------------------KKNIIISGGTSTGKTTFTNAALREI-PAIERLITVEDAREIVL 201 (332)
T ss_pred hhhhHHHHHHHHHHHHc--------------------CCcEEEECCCCCCHHHHHHHHHhhC-CCCCeEEEecCCCcccc
Q ss_pred cCCCccccccccccCCCCCC-chHHHHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCe
Q 003038 699 TRADSTEDSRNKRSRDEQSC-SYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGR 760 (854)
Q Consensus 699 ~~~~s~e~~~~~rl~~~~g~-g~~e~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~ 760 (854)
......-.....+...+.+. .+.+-+..++|.+| .+|++.|+- +.++... ++++..|.
T Consensus 202 ~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~P-D~IivGEiR--~~ea~~~-l~a~~tGh 260 (332)
T PRK13900 202 SNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRP-DRIIVGELR--GAEAFSF-LRAINTGH 260 (332)
T ss_pred ccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCC-CeEEEEecC--CHHHHHH-HHHHHcCC
No 452
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.19 E-value=0.035 Score=63.29 Aligned_cols=96 Identities=10% Similarity=0.117 Sum_probs=54.4
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhC----CCCceEEEccccccCcCCCccccc-cccccCC-CC--CCchHHHHHHHHH
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFG----SHNNFVSIALSSFSSTRADSTEDS-RNKRSRD-EQ--SCSYIERFAEAVS 729 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg----~~~~~i~id~s~~~~~~~~s~e~~-~~~rl~~-~~--g~g~~e~L~eav~ 729 (854)
..++|+||+|+|||+++.-||..+-- ....+.-+++..|... +.+.. ...+..+ |. .+.+ +.+..++.
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~a---a~eQL~~~a~~lgvpv~~~~~~-~~l~~~L~ 250 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIG---AKKQIQTYGDIMGIPVKAIESF-KDLKEEIT 250 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHH---HHHHHHHHhhcCCcceEeeCcH-HHHHHHHH
Confidence 58999999999999999999976531 1234444444444310 00110 1111111 11 1122 23444443
Q ss_pred -cCCCEEEEEecCCCCCHHHH--HHHHHhhh
Q 003038 730 -NNPHRVFLIEDVEQADYCSQ--KGFKRAIE 757 (854)
Q Consensus 730 -~~p~~ViliDEieka~~~v~--~~Ll~~le 757 (854)
...+.+|+||.+.+.+.+.. ..+.+.++
T Consensus 251 ~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~ 281 (388)
T PRK12723 251 QSKDFDLVLVDTIGKSPKDFMKLAEMKELLN 281 (388)
T ss_pred HhCCCCEEEEcCCCCCccCHHHHHHHHHHHH
Confidence 35689999999999987643 34555555
No 453
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.18 E-value=0.052 Score=60.23 Aligned_cols=90 Identities=14% Similarity=0.094 Sum_probs=52.6
Q ss_pred HHHHHHHhhccCcCCc-eeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHH
Q 003038 215 VMYVIENLMSKRKRNF-VVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVR 293 (854)
Q Consensus 215 i~~v~~~L~r~~k~n~-vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~ 293 (854)
++.+...+.+++-.+. +++||+|+|||++++.+|+.+.....+..--+ ++.+... ..... .++ .++++.+.+.
T Consensus 13 ~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D--~~~~~~~--~~~~i-~v~-~ir~~~~~~~ 86 (313)
T PRK05564 13 KNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVD--IIEFKPI--NKKSI-GVD-DIRNIIEEVN 86 (313)
T ss_pred HHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCC--eEEeccc--cCCCC-CHH-HHHHHHHHHh
Confidence 4555666665555555 79999999999999999998865432221112 2222110 01100 011 2556666554
Q ss_pred hhh--CCCeEEEeCccccc
Q 003038 294 SCL--GRGIVLNLGDLEWA 310 (854)
Q Consensus 294 ~~~--~~~~ILfidel~~l 310 (854)
... ++.=|++||+.+.+
T Consensus 87 ~~p~~~~~kv~iI~~ad~m 105 (313)
T PRK05564 87 KKPYEGDKKVIIIYNSEKM 105 (313)
T ss_pred cCcccCCceEEEEechhhc
Confidence 321 44568999999888
No 454
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=96.17 E-value=0.0063 Score=65.09 Aligned_cols=64 Identities=14% Similarity=0.098 Sum_probs=44.1
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSS 695 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~ 695 (854)
.-++||..|-++-.-.+...|+.- -.-..+||.||+|+|||.+|-++++.| |+.-+|..+-.|+
T Consensus 38 ~g~vGQ~~AReAagiivdlik~Kk-------------maGravLlaGppgtGKTAlAlaisqEL-G~kvPFcpmvgSE 101 (456)
T KOG1942|consen 38 AGFVGQENAREAAGIIVDLIKSKK-------------MAGRAVLLAGPPGTGKTALALAISQEL-GPKVPFCPMVGSE 101 (456)
T ss_pred cccccchhhhhhhhHHHHHHHhhh-------------ccCcEEEEecCCCCchhHHHHHHHHHh-CCCCCcccccchh
Confidence 457999887655443333333310 011278999999999999999999999 7777776665554
No 455
>PLN02165 adenylate isopentenyltransferase
Probab=96.13 E-value=0.0062 Score=67.56 Aligned_cols=47 Identities=13% Similarity=0.141 Sum_probs=34.6
Q ss_pred CCCCCCcHHHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHH
Q 003038 205 VSLDPIRNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 205 g~ldpvr~~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
.+|-|-|+++-..-...+..+++..++|+||+|+|||+++..||.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~g~iivIiGPTGSGKStLA~~LA~~l 67 (334)
T PLN02165 21 RKLPPPRSVVTMTSVAMEQNCKDKVVVIMGATGSGKSRLSVDLATRF 67 (334)
T ss_pred ccCCCCcccccccccccccCCCCCEEEEECCCCCcHHHHHHHHHHHc
Confidence 34555555554444444455667789999999999999999999885
No 456
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.13 E-value=0.059 Score=61.15 Aligned_cols=97 Identities=8% Similarity=0.035 Sum_probs=58.2
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCcccccc-ccccCCCCCC-chH-HHHHHHHHc----
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSR-NKRSRDEQSC-SYI-ERFAEAVSN---- 730 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~-~~rl~~~~g~-g~~-e~L~eav~~---- 730 (854)
..++|.||+|+|||+++..||..+.+....+.-+++..|.. .+.+... .....+-+.+ .+. ..+.+++..
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~Ri---aAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~ 318 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRI---GTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 318 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcch---HHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhc
Confidence 58999999999999999999998876665666666655531 0001100 0000111111 111 244455532
Q ss_pred CCCEEEEEecCCCCCHH--HHHHHHHhhh
Q 003038 731 NPHRVFLIEDVEQADYC--SQKGFKRAIE 757 (854)
Q Consensus 731 ~p~~ViliDEieka~~~--v~~~Ll~~le 757 (854)
..+.+||||-.-..+.+ ....|.++++
T Consensus 319 ~~~DvVLIDTaGRs~kd~~lm~EL~~~lk 347 (436)
T PRK11889 319 ARVDYILIDTAGKNYRASETVEEMIETMG 347 (436)
T ss_pred cCCCEEEEeCccccCcCHHHHHHHHHHHh
Confidence 35799999999888744 4555666665
No 457
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.12 E-value=0.021 Score=63.52 Aligned_cols=93 Identities=10% Similarity=0.211 Sum_probs=59.1
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHh--CCCCceEEEc-cccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCE
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVF--GSHNNFVSIA-LSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHR 734 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lf--g~~~~~i~id-~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ 734 (854)
..+++.|++|+|||++.++|...+. ....+++.+. -.|+.-. ....+ .+....+..+.+-+..++|.+|.
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~-----~~n~v-~l~~~~~~~~~~lv~~aLR~~PD- 217 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCA-----AENAV-ALHTSDTVDMARLLKSTMRLRPD- 217 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccC-----CCCEE-EeccCCCcCHHHHHHHHhCCCCC-
Confidence 3689999999999999999999874 2334666654 3333200 00111 11112233566677788888885
Q ss_pred EEEEecCCCCCHHHHHHHHHhhhcCe
Q 003038 735 VFLIEDVEQADYCSQKGFKRAIESGR 760 (854)
Q Consensus 735 ViliDEieka~~~v~~~Ll~~le~G~ 760 (854)
+|++-||- +++... +++++..|.
T Consensus 218 ~IivGEiR--g~ea~~-~l~a~~tGh 240 (323)
T PRK13833 218 RIIVGEVR--DGAALT-LLKAWNTGH 240 (323)
T ss_pred EEEEeecC--CHHHHH-HHHHHcCCC
Confidence 55699998 446654 688888774
No 458
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.12 E-value=0.01 Score=70.41 Aligned_cols=86 Identities=10% Similarity=0.146 Sum_probs=59.3
Q ss_pred cHHHHHHHH-HHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHH
Q 003038 211 RNEDVMYVI-ENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIK 289 (854)
Q Consensus 211 r~~ei~~v~-~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~ 289 (854)
++.|+--+. +-.-|..|+=.+|.||||-|||++|+-+|.- .|..++.++.+.=++ -..+++|+..++
T Consensus 309 ~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHViAkq----------aGYsVvEINASDeRt--~~~v~~kI~~av 376 (877)
T KOG1969|consen 309 TEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHVIAKQ----------AGYSVVEINASDERT--APMVKEKIENAV 376 (877)
T ss_pred chhhhhhcccCccCCCccceEEeecCCCCChhHHHHHHHHh----------cCceEEEeccccccc--HHHHHHHHHHHH
Confidence 555544333 3334457778899999999999999988865 688999998875543 344666766554
Q ss_pred HHHHhh-h-CCCeEEEeCccc
Q 003038 290 NLVRSC-L-GRGIVLNLGDLE 308 (854)
Q Consensus 290 ~~~~~~-~-~~~~ILfidel~ 308 (854)
.-=.-. . ++|+-|+||||+
T Consensus 377 q~~s~l~adsrP~CLViDEID 397 (877)
T KOG1969|consen 377 QNHSVLDADSRPVCLVIDEID 397 (877)
T ss_pred hhccccccCCCcceEEEeccc
Confidence 432211 0 468889999994
No 459
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.11 E-value=0.012 Score=74.39 Aligned_cols=113 Identities=18% Similarity=0.209 Sum_probs=77.3
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccC-CCCCC-chHH-HHHHHHHcCCCE
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSR-DEQSC-SYIE-RFAEAVSNNPHR 734 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~-~~~g~-g~~e-~L~eav~~~p~~ 734 (854)
-.+|+.||+.+|||.|.+-||+.. +..||||+-.+.++. .++ +-... ...|. .|.| .|.+|+|+.-
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~t---ghkfVRINNHEHTdl-----qeY-iGTyvTdd~G~lsFkEGvLVeAlR~Gy-- 957 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARET---GHKFVRINNHEHTDL-----QEY-IGTYVTDDDGSLSFKEGVLVEALRRGY-- 957 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHh---CccEEEecCcccchH-----HHH-hhceeecCCCceeeehhHHHHHHhcCc--
Confidence 368999999999999999999987 579999998766621 011 00011 22332 4555 7999998754
Q ss_pred EEEEecCCCCCHHHHHHHHHhhhcCeE-ecCCCcee--ecCCeEEEEecC
Q 003038 735 VFLIEDVEQADYCSQKGFKRAIESGRI-VTSSGDEV--SLGDAIVILSCE 781 (854)
Q Consensus 735 ViliDEieka~~~v~~~Ll~~le~G~l-~d~~G~~v--~~~~aIiIlTsn 781 (854)
-|++||..-|+.+|..+|-+.+|+.|- --+.-.+| .-.|-.+..|-|
T Consensus 958 WIVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQN 1007 (4600)
T COG5271 958 WIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQN 1007 (4600)
T ss_pred EEEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecC
Confidence 688999999999999999999997542 22333333 233444444544
No 460
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.10 E-value=0.0054 Score=57.54 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=26.4
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccc
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSS 695 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~ 695 (854)
.+++.||+|+|||++|+.||+.+ .+..++++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~-----~~~~i~~d~ 32 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL-----GFPVISMDD 32 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH-----TCEEEEEHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH-----CCeEEEecc
Confidence 37899999999999999999987 355566665
No 461
>PRK08118 topology modulation protein; Reviewed
Probab=96.09 E-value=0.009 Score=60.13 Aligned_cols=32 Identities=13% Similarity=0.269 Sum_probs=26.4
Q ss_pred CceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccc
Q 003038 229 NFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSI 270 (854)
Q Consensus 229 n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~ 270 (854)
.++++|+||+|||++++.|+.++ +..++++|.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l----------~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL----------NIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----------CCCceecch
Confidence 58999999999999999999874 456666663
No 462
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.09 E-value=0.042 Score=66.46 Aligned_cols=92 Identities=10% Similarity=0.101 Sum_probs=53.6
Q ss_pred HHHHHHHHHhhccCcCC-ceeecCCCCCHHHHHHHHHHHHHcCCCC---------------cccCCceEEEccccccccc
Q 003038 213 EDVMYVIENLMSKRKRN-FVVVGECLASIEGVVRGVIDKIEKGDVP---------------EALRDVKCLPLSISSFRHM 276 (854)
Q Consensus 213 ~ei~~v~~~L~r~~k~n-~vLvGe~GvGKta~v~~la~~i~~~~vp---------------~~L~~~~~~~l~~~~l~~~ 276 (854)
.-++.+...+..++-.+ .+|+||+|+|||++++.+|..+...... .......++.++.+.-.
T Consensus 24 ~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~~~~-- 101 (614)
T PRK14971 24 ALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHELDAASNN-- 101 (614)
T ss_pred HHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEecccccC--
Confidence 33444555555444445 5899999999999999999988632210 11122344444433111
Q ss_pred chHHHHHHHHHHHHHHHhhh--CCCeEEEeCccccc
Q 003038 277 NRVEVEQRVEEIKNLVRSCL--GRGIVLNLGDLEWA 310 (854)
Q Consensus 277 ~rge~E~rl~~l~~~~~~~~--~~~~ILfidel~~l 310 (854)
.. .-++++++.+.... ++.=|++|||+|.+
T Consensus 102 ~v----d~Ir~li~~~~~~P~~~~~KVvIIdea~~L 133 (614)
T PRK14971 102 SV----DDIRNLIEQVRIPPQIGKYKIYIIDEVHML 133 (614)
T ss_pred CH----HHHHHHHHHHhhCcccCCcEEEEEECcccC
Confidence 11 23455565555321 33458999999999
No 463
>PRK06696 uridine kinase; Validated
Probab=96.08 E-value=0.013 Score=61.59 Aligned_cols=59 Identities=19% Similarity=0.300 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 624 KDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 624 ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
+..+.+|+..|..... .....+.+.|++|+|||++|+.|++.|-......+.+.|..|.
T Consensus 4 ~~~~~~la~~~~~~~~---------------~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 4 KQLIKELAEHILTLNL---------------TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred HHHHHHHHHHHHHhCC---------------CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 4577888888876432 2235899999999999999999999985434567777777776
No 464
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.07 E-value=0.0092 Score=65.69 Aligned_cols=45 Identities=20% Similarity=0.369 Sum_probs=32.2
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCC-cccCCceEEEcccc
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVP-EALRDVKCLPLSIS 271 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp-~~L~~~~~~~l~~~ 271 (854)
..+.++++||||+||||+|-|+|+.+-. +|| -.+.+-.||++++.
T Consensus 64 aGrgiLi~GppgTGKTAlA~gIa~eLG~-dvPF~~isgsEiYS~E~k 109 (450)
T COG1224 64 AGRGILIVGPPGTGKTALAMGIARELGE-DVPFVAISGSEIYSLEVK 109 (450)
T ss_pred cccEEEEECCCCCcHHHHHHHHHHHhCC-CCCceeeccceeeeeccc
Confidence 5678999999999999999999998633 344 34444444444443
No 465
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.04 E-value=0.0064 Score=57.04 Aligned_cols=31 Identities=3% Similarity=0.202 Sum_probs=25.9
Q ss_pred ceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccc
Q 003038 230 FVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSI 270 (854)
Q Consensus 230 ~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~ 270 (854)
++|+|+||+|||++++.||+++ |..++++|-
T Consensus 2 I~I~G~~gsGKST~a~~La~~~----------~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERL----------GFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH----------TCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH----------CCeEEEecc
Confidence 5799999999999999999986 556666655
No 466
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.98 E-value=0.041 Score=57.46 Aligned_cols=99 Identities=14% Similarity=0.220 Sum_probs=57.6
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCC-----CceEEEccc-cccCcCCCccccccccccCC-CCCCchHHHHHHHHHcC
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSH-----NNFVSIALS-SFSSTRADSTEDSRNKRSRD-EQSCSYIERFAEAVSNN 731 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~-----~~~i~id~s-~~~~~~~~s~e~~~~~rl~~-~~g~g~~e~L~eav~~~ 731 (854)
..|+.||||||||++-|.||+.+-..- ....-+|-+ +.. ......-.|...+-.+ -.++--.+-+-.+++..
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIa-g~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIA-GCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhh-ccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 358999999999999999999885432 233444422 111 0000000111111000 00000112467899998
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHhhhcCe
Q 003038 732 PHRVFLIEDVEQADYCSQKGFKRAIESGR 760 (854)
Q Consensus 732 p~~ViliDEieka~~~v~~~Ll~~le~G~ 760 (854)
-..|+++|||-... --.+++.++..|.
T Consensus 218 ~PEViIvDEIGt~~--d~~A~~ta~~~GV 244 (308)
T COG3854 218 SPEVIIVDEIGTEE--DALAILTALHAGV 244 (308)
T ss_pred CCcEEEEeccccHH--HHHHHHHHHhcCc
Confidence 88999999998543 4467888888773
No 467
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=95.96 E-value=0.0087 Score=69.36 Aligned_cols=144 Identities=10% Similarity=0.118 Sum_probs=85.3
Q ss_pred cHHHHHHHHHHhhcc--CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccc--------c-chH
Q 003038 211 RNEDVMYVIENLMSK--RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRH--------M-NRV 279 (854)
Q Consensus 211 r~~ei~~v~~~L~r~--~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~--------~-~rg 279 (854)
....+.++++...|- +-.+++|+||+|+||+-+|+++=..=.+ ++..||+++++++-. | -+|
T Consensus 250 ~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R-------~~~PFIaiNCaAiPe~LlESELFGye~G 322 (560)
T COG3829 250 ESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPR-------ANGPFIAINCAAIPETLLESELFGYEKG 322 (560)
T ss_pred CCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCcc-------cCCCeEEEecccCCHHHHHHHHhCcCCc
Confidence 667777777765443 6668999999999999999876543211 567899999987631 2 233
Q ss_pred HHHHH----HHHHHHHHHhhhCCCeEEEeCccccccccccccccccccchhhhHHHHHHHhhcc--c--C-CC----Cce
Q 003038 280 EVEQR----VEEIKNLVRSCLGRGIVLNLGDLEWAEFRASSSEQVRGYYCSIEHIIMEIGKLVC--G--I-GE----NAR 346 (854)
Q Consensus 280 e~E~r----l~~l~~~~~~~~~~~~ILfidel~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~--~--~-~g----~g~ 346 (854)
-|--- =+.+|+.+. +| =||+|||-.+.- +....+-+.|. . . +| .-+
T Consensus 323 AFTGA~~~GK~GlfE~A~----gG-TLFLDEIgempl----------------~LQaKLLRVLQEkei~rvG~t~~~~vD 381 (560)
T COG3829 323 AFTGASKGGKPGLFELAN----GG-TLFLDEIGEMPL----------------PLQAKLLRVLQEKEIERVGGTKPIPVD 381 (560)
T ss_pred cccccccCCCCcceeecc----CC-eEEehhhccCCH----------------HHHHHHHHHHhhceEEecCCCCceeeE
Confidence 33211 223555543 23 499999966611 12223444441 1 1 11 127
Q ss_pred EEEEEecCHHHHHHhhccCCchhhh--hccCCCCCCCchH
Q 003038 347 FWLMGIATFQSYMRCKSGHPSLETL--WSLHPLTIPAGSL 384 (854)
Q Consensus 347 l~lIgatT~~ey~k~~~~~pale~~--~~~~~v~i~~~sl 384 (854)
|++|+||+-+-=. . ..+..|.++ +|+..++|+=|.|
T Consensus 382 VRIIAATN~nL~~-~-i~~G~FReDLYYRLNV~~i~iPPL 419 (560)
T COG3829 382 VRIIAATNRNLEK-M-IAEGTFREDLYYRLNVIPITIPPL 419 (560)
T ss_pred EEEEeccCcCHHH-H-HhcCcchhhheeeeceeeecCCCc
Confidence 9999999743211 1 234556543 5887777776654
No 468
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.96 E-value=0.016 Score=60.44 Aligned_cols=96 Identities=16% Similarity=0.156 Sum_probs=54.2
Q ss_pred CCcHHHHHHHHHHhhc-cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHH--HHHHH
Q 003038 209 PIRNEDVMYVIENLMS-KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVE--VEQRV 285 (854)
Q Consensus 209 pvr~~ei~~v~~~L~r-~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge--~E~rl 285 (854)
-|..|+...-++++.+ +.-.|.++.||||+|||+-+..||+++.-....+ -++.|+.+. .||- +-.++
T Consensus 29 IVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke-----~vLELNASd----eRGIDvVRn~I 99 (333)
T KOG0991|consen 29 IVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKE-----AVLELNASD----ERGIDVVRNKI 99 (333)
T ss_pred hhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhh-----HhhhccCcc----ccccHHHHHHH
Confidence 3444554444455554 4667999999999999999999998865322111 244454442 2331 12232
Q ss_pred HHHHHH-HHhhhCCCeEEEeCccccc--ccc
Q 003038 286 EEIKNL-VRSCLGRGIVLNLGDLEWA--EFR 313 (854)
Q Consensus 286 ~~l~~~-~~~~~~~~~ILfidel~~l--~~~ 313 (854)
|..-.. |.--.|.-=|+.+||.+.+ |+.
T Consensus 100 K~FAQ~kv~lp~grhKIiILDEADSMT~gAQ 130 (333)
T KOG0991|consen 100 KMFAQKKVTLPPGRHKIIILDEADSMTAGAQ 130 (333)
T ss_pred HHHHHhhccCCCCceeEEEeeccchhhhHHH
Confidence 221111 0000034468899999888 544
No 469
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.92 E-value=0.11 Score=59.47 Aligned_cols=95 Identities=14% Similarity=0.169 Sum_probs=55.8
Q ss_pred eeEEEecCCCchHHHHHHHHHHHH-hCCCCceEEEccccccCcCCCcccccccccc---CCCCCCch--HHHHHHHHHcC
Q 003038 658 TWLFFQGVDADAKEKIAKELARLV-FGSHNNFVSIALSSFSSTRADSTEDSRNKRS---RDEQSCSY--IERFAEAVSNN 731 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~l-fg~~~~~i~id~s~~~~~~~~s~e~~~~~rl---~~~~g~g~--~e~L~eav~~~ 731 (854)
..++|.||+|+|||+++..||..+ +.......-+++..|... + ...+.+. .+-+.+.. ...+.+.++..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~a---A--~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~ 298 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIA---A--IEQLKRYADTMGMPFYPVKDIKKFKETLARD 298 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhh---H--HHHHHHHHHhcCCCeeehHHHHHHHHHHHhC
Confidence 478999999999999999999754 444445555666655420 0 0111111 11111111 12566667777
Q ss_pred CCEEEEEecCCCCC--HHHHHHHHHhhh
Q 003038 732 PHRVFLIEDVEQAD--YCSQKGFKRAIE 757 (854)
Q Consensus 732 p~~ViliDEieka~--~~v~~~Ll~~le 757 (854)
.+.+||||=.-..+ ......|...++
T Consensus 299 ~~D~VLIDTaGr~~rd~~~l~eL~~~~~ 326 (432)
T PRK12724 299 GSELILIDTAGYSHRNLEQLERMQSFYS 326 (432)
T ss_pred CCCEEEEeCCCCCccCHHHHHHHHHHHH
Confidence 88999999555443 445555555554
No 470
>PRK10867 signal recognition particle protein; Provisional
Probab=95.91 E-value=0.11 Score=60.06 Aligned_cols=88 Identities=14% Similarity=0.213 Sum_probs=51.9
Q ss_pred CcceeEEEecCCCchHHHHHHHHHHHHhCC-CCceEEEccccccCcCCCcccccc--ccc--c--CC-CCCCchHH---H
Q 003038 655 KEETWLFFQGVDADAKEKIAKELARLVFGS-HNNFVSIALSSFSSTRADSTEDSR--NKR--S--RD-EQSCSYIE---R 723 (854)
Q Consensus 655 kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~-~~~~i~id~s~~~~~~~~s~e~~~--~~r--l--~~-~~g~g~~e---~ 723 (854)
++..+++|+||+|+|||+++--||..+-.. ...+..+++..|.... .++.. ..+ . .. +.+....+ .
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa---~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~ 174 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAA---IEQLKTLGEQIGVPVFPSGDGQDPVDIAKA 174 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHH---HHHHHHHHhhcCCeEEecCCCCCHHHHHHH
Confidence 345799999999999999999999877544 4556667776665210 00000 000 0 00 11111112 2
Q ss_pred HHHHHHcCCCEEEEEecCCCCC
Q 003038 724 FAEAVSNNPHRVFLIEDVEQAD 745 (854)
Q Consensus 724 L~eav~~~p~~ViliDEieka~ 745 (854)
..+..+...+.+|++|=.-+.+
T Consensus 175 a~~~a~~~~~DvVIIDTaGrl~ 196 (433)
T PRK10867 175 ALEEAKENGYDVVIVDTAGRLH 196 (433)
T ss_pred HHHHHHhcCCCEEEEeCCCCcc
Confidence 2233455678999999998875
No 471
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.91 E-value=0.019 Score=55.85 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=21.4
Q ss_pred ceeecCCCCCHHHHHHHHHHHHHc
Q 003038 230 FVVVGECLASIEGVVRGVIDKIEK 253 (854)
Q Consensus 230 ~vLvGe~GvGKta~v~~la~~i~~ 253 (854)
++|+|+||+|||+++..++.....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~ 25 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT 25 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh
Confidence 578999999999999999887754
No 472
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.90 E-value=0.078 Score=58.43 Aligned_cols=96 Identities=15% Similarity=0.171 Sum_probs=59.1
Q ss_pred HHHHHHHHHhh-ccCcCC-ceeecCCCCCHHHHHHHHHHHHHcCCCCccc--------------CCceEEEccccccccc
Q 003038 213 EDVMYVIENLM-SKRKRN-FVVVGECLASIEGVVRGVIDKIEKGDVPEAL--------------RDVKCLPLSISSFRHM 276 (854)
Q Consensus 213 ~ei~~v~~~L~-r~~k~n-~vLvGe~GvGKta~v~~la~~i~~~~vp~~L--------------~~~~~~~l~~~~l~~~ 276 (854)
+.+.++..-.. ..+-.+ .+|+||||+|||+++..+|..+..-.....- ....|+.++.+.....
T Consensus 8 ~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~ 87 (325)
T COG0470 8 EAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKI 87 (325)
T ss_pred hHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCC
Confidence 33444444433 444556 8999999999999999999988743322111 1235666665544332
Q ss_pred chHHHHHHHHHHHHHHHhhh--CCCeEEEeCccccc
Q 003038 277 NRVEVEQRVEEIKNLVRSCL--GRGIVLNLGDLEWA 310 (854)
Q Consensus 277 ~rge~E~rl~~l~~~~~~~~--~~~~ILfidel~~l 310 (854)
. -..+.++++.+...... ++.-|++|||++.+
T Consensus 88 ~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~m 121 (325)
T COG0470 88 D--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKL 121 (325)
T ss_pred c--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHH
Confidence 1 23445666655554432 34678999999888
No 473
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.87 E-value=0.03 Score=61.79 Aligned_cols=93 Identities=13% Similarity=0.171 Sum_probs=59.7
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhC--CCCceEEEcc-ccccCcCCCccccccccccCCCCCC-chHHHHHHHHHcCCC
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFG--SHNNFVSIAL-SSFSSTRADSTEDSRNKRSRDEQSC-SYIERFAEAVSNNPH 733 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg--~~~~~i~id~-s~~~~~~~~s~e~~~~~rl~~~~g~-g~~e~L~eav~~~p~ 733 (854)
+.+++.||+|+|||+++++|...+-. ...+++.+.- .|+.-. .+. ...+....+. ++.+-+..++|.+|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~-----~~~-~v~~~~~~~~~~~~~~l~~aLR~~p- 205 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCA-----APN-VVQLRTSDDAISMTRLLKATLRLRP- 205 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCC-----CCC-EEEEEecCCCCCHHHHHHHHhcCCC-
Confidence 47899999999999999999988743 2455666642 232200 001 1111111222 56667888888888
Q ss_pred EEEEEecCCCCCHHHHHHHHHhhhcCe
Q 003038 734 RVFLIEDVEQADYCSQKGFKRAIESGR 760 (854)
Q Consensus 734 ~ViliDEieka~~~v~~~Ll~~le~G~ 760 (854)
.+|++.||- +++... +++++..|.
T Consensus 206 D~iivGEiR--~~ea~~-~l~a~~tGh 229 (299)
T TIGR02782 206 DRIIVGEVR--GGEALD-LLKAWNTGH 229 (299)
T ss_pred CEEEEeccC--CHHHHH-HHHHHHcCC
Confidence 456699998 466654 589998874
No 474
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.85 E-value=0.025 Score=56.26 Aligned_cols=66 Identities=21% Similarity=0.319 Sum_probs=47.9
Q ss_pred ceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccccccccc----------chHHHHHHHHHHHHHHHhhhCCC
Q 003038 230 FVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHM----------NRVEVEQRVEEIKNLVRSCLGRG 299 (854)
Q Consensus 230 ~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~----------~rge~E~rl~~l~~~~~~~~~~~ 299 (854)
+.|+|-||+|||+|+++|.+++.. .|.+++-||...+..+ .|.|.-.|+.++-..+... |
T Consensus 5 IwltGlsGsGKtTlA~~L~~~L~~-------~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~~---G 74 (156)
T PF01583_consen 5 IWLTGLSGSGKTTLARALERRLFA-------RGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLADQ---G 74 (156)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHH-------TTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHHT---T
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-------cCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---C
Confidence 678999999999999999999876 4678888988777653 3455556666665555553 6
Q ss_pred eEEEeC
Q 003038 300 IVLNLG 305 (854)
Q Consensus 300 ~ILfid 305 (854)
+|+.+.
T Consensus 75 ~ivIva 80 (156)
T PF01583_consen 75 IIVIVA 80 (156)
T ss_dssp SEEEEE
T ss_pred CeEEEe
Confidence 666655
No 475
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.85 E-value=0.032 Score=63.33 Aligned_cols=144 Identities=13% Similarity=0.111 Sum_probs=81.0
Q ss_pred ccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCC
Q 003038 622 WQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRA 701 (854)
Q Consensus 622 GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~ 701 (854)
-|..+...|..++... . ...+++.||.|+|||++.++|-..+-.....++...-+... +..
T Consensus 5 eQ~~~~~~v~~~~~~~-----------------~-~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~A-A~~ 65 (364)
T PF05970_consen 5 EQRRVFDTVIEAIENE-----------------E-GLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIA-AFN 65 (364)
T ss_pred HHHHHHHHHHHHHHcc-----------------C-CcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHH-HHh
Confidence 3777878877776541 1 24788899999999999999998875544444333222111 000
Q ss_pred C--ccccccccccC-CCCCCchH-----HHHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeecCC
Q 003038 702 D--STEDSRNKRSR-DEQSCSYI-----ERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGD 773 (854)
Q Consensus 702 ~--s~e~~~~~rl~-~~~g~g~~-----e~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~~~ 773 (854)
. ..--|+...+. ........ ..+.+.++ .-.||+||||-.++..++..+-+.|.+= ..+......|..
T Consensus 66 i~~G~T~hs~f~i~~~~~~~~~~~~~~~~~~~~~l~--~~~~lIiDEism~~~~~l~~i~~~lr~i--~~~~~~~~pFGG 141 (364)
T PF05970_consen 66 IPGGRTIHSFFGIPINNNEKSQCKISKNSRLRERLR--KADVLIIDEISMVSADMLDAIDRRLRDI--RKSKDSDKPFGG 141 (364)
T ss_pred ccCCcchHHhcCccccccccccccccccchhhhhhh--hheeeecccccchhHHHHHHHHHhhhhh--hcccchhhhcCc
Confidence 0 00123333322 11111100 11222222 2369999999999999999887777641 111002467888
Q ss_pred eEEEEecCCCCCCCCC
Q 003038 774 AIVILSCESFSSRSRA 789 (854)
Q Consensus 774 aIiIlTsn~f~~~s~~ 789 (854)
..+||. ..|-..++.
T Consensus 142 ~~vil~-GDf~QlpPV 156 (364)
T PF05970_consen 142 KQVILF-GDFLQLPPV 156 (364)
T ss_pred ceEEee-hhhhhcCCC
Confidence 888884 445444333
No 476
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.84 E-value=0.023 Score=64.74 Aligned_cols=85 Identities=21% Similarity=0.277 Sum_probs=48.7
Q ss_pred ceeEEEecCCCchHHHHHHHHHHHHhCCCC--ceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCE
Q 003038 657 ETWLFFQGVDADAKEKIAKELARLVFGSHN--NFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHR 734 (854)
Q Consensus 657 ~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~--~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ 734 (854)
-.+++++||+|.|||.|..++......... .++.+....|. .+. +.-+.. +..+.+.+.. ...
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~-------~~~-v~a~~~----~~~~~Fk~~y---~~d 177 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFT-------NDF-VKALRD----NEMEKFKEKY---SLD 177 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHH-------HHH-HHHHHh----hhHHHHHHhh---ccC
Confidence 457999999999999999999988865544 34444333332 000 000000 1112222222 357
Q ss_pred EEEEecCCCCCH--HHHHHHHHhh
Q 003038 735 VFLIEDVEQADY--CSQKGFKRAI 756 (854)
Q Consensus 735 ViliDEieka~~--~v~~~Ll~~l 756 (854)
+++||+|+.... ..|..|...|
T Consensus 178 lllIDDiq~l~gk~~~qeefFh~F 201 (408)
T COG0593 178 LLLIDDIQFLAGKERTQEEFFHTF 201 (408)
T ss_pred eeeechHhHhcCChhHHHHHHHHH
Confidence 999999997543 3455555444
No 477
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.84 E-value=0.086 Score=54.48 Aligned_cols=37 Identities=16% Similarity=0.150 Sum_probs=27.2
Q ss_pred HHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHc
Q 003038 216 MYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEK 253 (854)
Q Consensus 216 ~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~ 253 (854)
+.+-.+|. ...+-.+|.|+||+|||+++..++..+..
T Consensus 8 ~a~~~~l~-~~~~~~~l~G~aGtGKT~~l~~~~~~~~~ 44 (196)
T PF13604_consen 8 EAVRAILT-SGDRVSVLQGPAGTGKTTLLKALAEALEA 44 (196)
T ss_dssp HHHHHHHH-CTCSEEEEEESTTSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-cCCeEEEEEECCCCCHHHHHHHHHHHHHh
Confidence 33333444 34555777899999999999999888766
No 478
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.84 E-value=0.039 Score=65.64 Aligned_cols=57 Identities=11% Similarity=0.086 Sum_probs=39.9
Q ss_pred cHHHHHHHHHHhhc--cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccccccc
Q 003038 211 RNEDVMYVIENLMS--KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFR 274 (854)
Q Consensus 211 r~~ei~~v~~~L~r--~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~ 274 (854)
...-++++++-+.+ ....+++|+||+|+||+.+|+++-..-.. .+..|+.++++.+-
T Consensus 209 ~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r-------~~~pfv~inca~~~ 267 (520)
T PRK10820 209 VSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPR-------GKKPFLALNCASIP 267 (520)
T ss_pred CCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCC-------CCCCeEEeccccCC
Confidence 55555555555432 36778999999999999999997543211 34578899988763
No 479
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.84 E-value=0.066 Score=58.13 Aligned_cols=104 Identities=19% Similarity=0.310 Sum_probs=65.4
Q ss_pred ccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCc
Q 003038 620 VPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSST 699 (854)
Q Consensus 620 V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~ 699 (854)
++=-++|+..|++..+-.+ .|.|++|+.|..|+||++++| ||-.+.+ ..+..+.++
T Consensus 10 lVlf~~ai~hi~ri~RvL~----------------~~~Gh~LLvG~~GsGr~sl~r-Laa~i~~--~~~~~i~~~----- 65 (268)
T PF12780_consen 10 LVLFDEAIEHIARISRVLS----------------QPRGHALLVGVGGSGRQSLAR-LAAFICG--YEVFQIEIT----- 65 (268)
T ss_dssp ----HHHHHHHHHHHHHHC----------------STTEEEEEECTTTSCHHHHHH-HHHHHTT--EEEE-TTTS-----
T ss_pred eeeHHHHHHHHHHHHHHHc----------------CCCCCeEEecCCCccHHHHHH-HHHHHhc--cceEEEEee-----
Confidence 3445677777777655432 467899999999999999999 5555532 223333222
Q ss_pred CCCccccccccccCCCCCCchH---HHHHHHHH----cCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEec
Q 003038 700 RADSTEDSRNKRSRDEQSCSYI---ERFAEAVS----NNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVT 763 (854)
Q Consensus 700 ~~~s~e~~~~~rl~~~~g~g~~---e~L~eav~----~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d 763 (854)
.+|+.. +.|..++. ++...|++|+|-+-.+......+-..|..|.+.+
T Consensus 66 ----------------~~y~~~~f~~dLk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~ 120 (268)
T PF12780_consen 66 ----------------KGYSIKDFKEDLKKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPN 120 (268)
T ss_dssp ----------------TTTHHHHHHHHHHHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TT
T ss_pred ----------------CCcCHHHHHHHHHHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCC
Confidence 234332 34444433 5667899999988888888888888888887763
No 480
>PHA00729 NTP-binding motif containing protein
Probab=95.83 E-value=0.02 Score=60.23 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=22.8
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHh
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVF 682 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lf 682 (854)
..+++.|++|+|||.+|.+||+.+.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999999873
No 481
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=95.83 E-value=0.016 Score=68.15 Aligned_cols=39 Identities=8% Similarity=0.025 Sum_probs=31.9
Q ss_pred cHHHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHH
Q 003038 211 RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDK 250 (854)
Q Consensus 211 r~~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~ 250 (854)
..+.+.+-+++-.. ...|++|+||||+|||++++.++..
T Consensus 196 Gq~~~~~al~~aa~-~g~~vlliG~pGsGKTtlar~l~~l 234 (499)
T TIGR00368 196 GQQHAKRALEIAAA-GGHNLLLFGPPGSGKTMLASRLQGI 234 (499)
T ss_pred CcHHHHhhhhhhcc-CCCEEEEEecCCCCHHHHHHHHhcc
Confidence 56677777777663 6679999999999999999988754
No 482
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.76 E-value=0.036 Score=62.29 Aligned_cols=93 Identities=12% Similarity=0.214 Sum_probs=58.9
Q ss_pred ceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEc-cccccCcCCCccccccccccC-C--C--C-CCchHHHHHHHHH
Q 003038 657 ETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIA-LSSFSSTRADSTEDSRNKRSR-D--E--Q-SCSYIERFAEAVS 729 (854)
Q Consensus 657 ~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id-~s~~~~~~~~s~e~~~~~rl~-~--~--~-g~g~~e~L~eav~ 729 (854)
...+++.||+|+|||++.++|...+ ....+++.+. ..|+.-. ....+ ++. . + . +..+.+-+..++|
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i-~~~~rivtiEd~~El~l~-----~~~~v-~l~~~~~~~~~~~~t~~~ll~~~LR 234 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAI-PPQERLITIEDTLELVIP-----HENHV-RLLYSKNGAGLGAVTAEHLLQASLR 234 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHccc-CCCCCEEEECCCccccCC-----CCCEE-EEEeeccccCcCccCHHHHHHHHhc
Confidence 3479999999999999999999887 4455666653 3333210 01111 111 1 1 1 1245556777888
Q ss_pred cCCCEEEEEecCCCCCHHHHHHHHHhhhcCe
Q 003038 730 NNPHRVFLIEDVEQADYCSQKGFKRAIESGR 760 (854)
Q Consensus 730 ~~p~~ViliDEieka~~~v~~~Ll~~le~G~ 760 (854)
.+| .+|++-|+- +.+... +++++..|.
T Consensus 235 ~~p-D~IivGEiR--~~ea~~-~l~a~~tGh 261 (344)
T PRK13851 235 MRP-DRILLGEMR--DDAAWA-YLSEVVSGH 261 (344)
T ss_pred CCC-CeEEEEeeC--cHHHHH-HHHHHHhCC
Confidence 888 457789998 566665 677887764
No 483
>PHA02774 E1; Provisional
Probab=95.75 E-value=0.04 Score=65.01 Aligned_cols=94 Identities=12% Similarity=0.218 Sum_probs=56.4
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEE
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFL 737 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~Vil 737 (854)
..++|+||+|+|||.+|..|++.+-|.--.| ++-. ..+. .+.|.+ -.|++
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~f--vN~~----------s~Fw------------Lqpl~d------~ki~v 484 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISF--VNSK----------SHFW------------LQPLAD------AKIAL 484 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEE--EECc----------cccc------------cchhcc------CCEEE
Confidence 3799999999999999999999985432222 3311 0111 111221 36999
Q ss_pred EecCCCC-CHHHHHHHHHhhhcCeEe-c-CCCceeecCCeEEEEecC
Q 003038 738 IEDVEQA-DYCSQKGFKRAIESGRIV-T-SSGDEVSLGDAIVILSCE 781 (854)
Q Consensus 738 iDEieka-~~~v~~~Ll~~le~G~l~-d-~~G~~v~~~~aIiIlTsn 781 (854)
|||+-.. -..+...|+.+|+-..+. | .+-..+..+..=+|+|||
T Consensus 485 lDD~t~~~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN 531 (613)
T PHA02774 485 LDDATHPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSN 531 (613)
T ss_pred EecCcchHHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecC
Confidence 9999332 233444666666644222 2 123445566677888898
No 484
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.73 E-value=0.0091 Score=59.98 Aligned_cols=63 Identities=10% Similarity=0.118 Sum_probs=39.6
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccc
Q 003038 619 KVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSF 696 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~ 696 (854)
+++|-++.++.+...+.... .+....++++|++|+|||.+.+++.+.+-.....++.+++..+
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~---------------~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQ---------------SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTS---------------S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHHH---------------cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 35788888888888875111 1233589999999999999999888877554434777777766
No 485
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=95.72 E-value=0.1 Score=58.44 Aligned_cols=136 Identities=7% Similarity=-0.051 Sum_probs=73.5
Q ss_pred HHHHHHhhccCcCCc-eeecCCCCCHHHHHHHHHHHHHcCCCCcc----------------cCCceEEEcccccccccch
Q 003038 216 MYVIENLMSKRKRNF-VVVGECLASIEGVVRGVIDKIEKGDVPEA----------------LRDVKCLPLSISSFRHMNR 278 (854)
Q Consensus 216 ~~v~~~L~r~~k~n~-vLvGe~GvGKta~v~~la~~i~~~~vp~~----------------L~~~~~~~l~~~~l~~~~r 278 (854)
+.+...+..++-.+. +|+||+|+||+++++.+|+.+...+.... ..+..++..+-.. ..
T Consensus 16 ~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~~~----i~ 91 (329)
T PRK08058 16 KMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDGQS----IK 91 (329)
T ss_pred HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEecccccc----CC
Confidence 344444444455555 89999999999999999999875431110 1122333222110 01
Q ss_pred HHHHHHHHHHHHHHHhhh--CCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhc-ccCCCCceEEEEEecC
Q 003038 279 VEVEQRVEEIKNLVRSCL--GRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLV-CGIGENARFWLMGIAT 354 (854)
Q Consensus 279 ge~E~rl~~l~~~~~~~~--~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll-~~~~g~g~l~lIgatT 354 (854)
=+.++++++.+.... ++.=|++|||++.+ .. +...+-+.| .|. + ...+|.+|+
T Consensus 92 ---id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~-----------------a~NaLLK~LEEPp-~--~~~~Il~t~ 148 (329)
T PRK08058 92 ---KDQIRYLKEEFSKSGVESNKKVYIIEHADKMTAS-----------------AANSLLKFLEEPS-G--GTTAILLTE 148 (329)
T ss_pred ---HHHHHHHHHHHhhCCcccCceEEEeehHhhhCHH-----------------HHHHHHHHhcCCC-C--CceEEEEeC
Confidence 123445555544211 34458999999988 43 122334444 221 2 366666555
Q ss_pred HHHHHHhhccCCchhhhhccCCCCCCCchHH
Q 003038 355 FQSYMRCKSGHPSLETLWSLHPLTIPAGSLS 385 (854)
Q Consensus 355 ~~ey~k~~~~~pale~~~~~~~v~i~~~sl~ 385 (854)
... + --|++.+ |-+.|.++.++-.
T Consensus 149 ~~~--~---ll~TIrS--Rc~~i~~~~~~~~ 172 (329)
T PRK08058 149 NKH--Q---ILPTILS--RCQVVEFRPLPPE 172 (329)
T ss_pred ChH--h---CcHHHHh--hceeeeCCCCCHH
Confidence 211 2 3467777 7777777665543
No 486
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.67 E-value=0.045 Score=60.62 Aligned_cols=92 Identities=11% Similarity=0.159 Sum_probs=57.5
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEc-cccccCcCCCccccccccccC-C----CC-CCchHHHHHHHHHc
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIA-LSSFSSTRADSTEDSRNKRSR-D----EQ-SCSYIERFAEAVSN 730 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id-~s~~~~~~~~s~e~~~~~rl~-~----~~-g~g~~e~L~eav~~ 730 (854)
..++|.||+|+|||++.++|...+ ......+.++ ..++... ....+ .+. . +. ...+.+.+..++|.
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~-~~~~~iv~ied~~El~~~-----~~~~~-~l~~~~~~~~~~~~~~~~~l~~~Lr~ 217 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEI-PKDERIITIEDTREIFLP-----HPNYV-HLFYSKGGQGLAKVTPKDLLQSCLRM 217 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccC-CccccEEEEcCccccCCC-----CCCEE-EEEecCCCCCcCccCHHHHHHHHhcC
Confidence 489999999999999999999876 4445566664 2222210 00111 011 0 11 12455567777887
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHhhhcCe
Q 003038 731 NPHRVFLIEDVEQADYCSQKGFKRAIESGR 760 (854)
Q Consensus 731 ~p~~ViliDEieka~~~v~~~Ll~~le~G~ 760 (854)
+| .+|++||+-- .++.. +++++..|.
T Consensus 218 ~p-d~ii~gE~r~--~e~~~-~l~a~~~g~ 243 (308)
T TIGR02788 218 RP-DRIILGELRG--DEAFD-FIRAVNTGH 243 (308)
T ss_pred CC-CeEEEeccCC--HHHHH-HHHHHhcCC
Confidence 77 5678999994 66654 577777663
No 487
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.67 E-value=0.011 Score=69.50 Aligned_cols=44 Identities=9% Similarity=0.215 Sum_probs=37.0
Q ss_pred cHHHHHHHHHHh------hccCcCCceeecCCCCCHHHHHHHHHHHHHcC
Q 003038 211 RNEDVMYVIENL------MSKRKRNFVVVGECLASIEGVVRGVIDKIEKG 254 (854)
Q Consensus 211 r~~ei~~v~~~L------~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~ 254 (854)
-++.++++++.| ...+++-.+|+||||+|||++|+.|+..+..-
T Consensus 81 lee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 81 MEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 788899999998 22356678899999999999999999977654
No 488
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.66 E-value=0.0095 Score=57.93 Aligned_cols=44 Identities=14% Similarity=0.263 Sum_probs=30.1
Q ss_pred ceeecCCCCCHHHHHHHHHHHHHcC-----------CCCcccCCceEEEcccccc
Q 003038 230 FVVVGECLASIEGVVRGVIDKIEKG-----------DVPEALRDVKCLPLSISSF 273 (854)
Q Consensus 230 ~vLvGe~GvGKta~v~~la~~i~~~-----------~vp~~L~~~~~~~l~~~~l 273 (854)
++|+||+|+|||++++.|++.+..+ .-+..+.+...+-++...|
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g~~~~~v~~~~~ 56 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEF 56 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCCceeEEeCHHHH
Confidence 5789999999999999999875321 1123455666666654444
No 489
>PRK04296 thymidine kinase; Provisional
Probab=95.65 E-value=0.02 Score=58.88 Aligned_cols=24 Identities=8% Similarity=-0.061 Sum_probs=21.2
Q ss_pred ceeecCCCCCHHHHHHHHHHHHHc
Q 003038 230 FVVVGECLASIEGVVRGVIDKIEK 253 (854)
Q Consensus 230 ~vLvGe~GvGKta~v~~la~~i~~ 253 (854)
.+++||||+|||+++-+++.+...
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~ 28 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEE 28 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHH
Confidence 578999999999999999988754
No 490
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.65 E-value=0.23 Score=57.53 Aligned_cols=42 Identities=14% Similarity=0.218 Sum_probs=33.4
Q ss_pred cceeEEEecCCCchHHHHHHHHHHHHh-CCCCceEEEcccccc
Q 003038 656 EETWLFFQGVDADAKEKIAKELARLVF-GSHNNFVSIALSSFS 697 (854)
Q Consensus 656 p~~~lLf~Gp~GvGKt~lAr~LA~~lf-g~~~~~i~id~s~~~ 697 (854)
+...++|.|++|+|||++|.-||..+. ....+...+++..|.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R 140 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYR 140 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 346999999999999999999999875 234566777777665
No 491
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.63 E-value=0.031 Score=55.65 Aligned_cols=69 Identities=13% Similarity=0.144 Sum_probs=0.0
Q ss_pred cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccc----------cccccc-chHHHHHHHHHHHHHHH
Q 003038 225 KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSI----------SSFRHM-NRVEVEQRVEEIKNLVR 293 (854)
Q Consensus 225 ~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~----------~~l~~~-~rge~E~rl~~l~~~~~ 293 (854)
..+.+++|+|+||+|||++++.||+++ +..++..|. ..+... ....|.+....++..+.
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l----------~~~~~d~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~l~ 71 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRL----------GYDFIDTDHLIEARAGKSIPEIFEEEGEAAFRELEEEVLAELL 71 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHh----------CCCEEEChHHHHHHcCCCHHHHHHHHCHHHHHHHHHHHHHHHH
Q ss_pred hhhCCCeEEEeC
Q 003038 294 SCLGRGIVLNLG 305 (854)
Q Consensus 294 ~~~~~~~ILfid 305 (854)
.. .++||..+
T Consensus 72 ~~--~~~vi~~g 81 (175)
T PRK00131 72 AR--HNLVISTG 81 (175)
T ss_pred hc--CCCEEEeC
No 492
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.62 E-value=0.029 Score=54.09 Aligned_cols=62 Identities=8% Similarity=0.026 Sum_probs=0.0
Q ss_pred ceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccc------------ccccccchHHHHHHHHHHHHHHHhhhC
Q 003038 230 FVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSI------------SSFRHMNRVEVEQRVEEIKNLVRSCLG 297 (854)
Q Consensus 230 ~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~------------~~l~~~~rge~E~rl~~l~~~~~~~~~ 297 (854)
++++|+||+|||++++.++.. .+..+++.|. ..........+.+.+.+.+....+. +
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~----------~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-g 70 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR----------LGAVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKALRN-G 70 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH----------STEEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred EEEECCCCCCHHHHHHHHHHH----------CCCEEEeHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHHc-C
Q ss_pred CCeEE
Q 003038 298 RGIVL 302 (854)
Q Consensus 298 ~~~IL 302 (854)
.++||
T Consensus 71 ~~~vv 75 (143)
T PF13671_consen 71 NSVVV 75 (143)
T ss_dssp -EEEE
T ss_pred CCcee
No 493
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=95.62 E-value=0.027 Score=73.71 Aligned_cols=89 Identities=20% Similarity=0.265 Sum_probs=65.5
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccC-CCCCC-chHH-HHHHHHHcCCCEE
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSR-DEQSC-SYIE-RFAEAVSNNPHRV 735 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~-~~~g~-g~~e-~L~eav~~~p~~V 735 (854)
.+||.||+++|||.+++.||+.. ..++++|+-.+.++. ..-+.+.. ...|. .+.+ .|.+|+++ ...
T Consensus 442 pillqG~tssGKtsii~~la~~~---g~~~vrinnhehtd~------qeyig~y~~~~~g~l~freg~LV~Alr~--G~~ 510 (1856)
T KOG1808|consen 442 PILLQGPTSSGKTSIIKELARAT---GKNIVRINNHEHTDL------QEYIGTYVADDNGDLVFREGVLVQALRN--GDW 510 (1856)
T ss_pred CeEEecCcCcCchhHHHHHHHHh---ccCceehhccccchH------HHHHHhhhcCCCCCeeeehhHHHHHHHh--CCE
Confidence 58999999999999999999988 468899887655521 00111111 12222 3333 57777776 458
Q ss_pred EEEecCCCCCHHHHHHHHHhhhc
Q 003038 736 FLIEDVEQADYCSQKGFKRAIES 758 (854)
Q Consensus 736 iliDEieka~~~v~~~Ll~~le~ 758 (854)
+++||++-++.+++++|.+.+++
T Consensus 511 ~vlD~lnla~~dvL~aLnrlldd 533 (1856)
T KOG1808|consen 511 IVLDELNLAPHDVLEALNRLLDD 533 (1856)
T ss_pred EEeccccccchHHHHHHHhhhhh
Confidence 99999999999999999999997
No 494
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.60 E-value=0.026 Score=60.40 Aligned_cols=24 Identities=8% Similarity=0.135 Sum_probs=21.8
Q ss_pred ceeecCCCCCHHHHHHHHHHHHHc
Q 003038 230 FVVVGECLASIEGVVRGVIDKIEK 253 (854)
Q Consensus 230 ~vLvGe~GvGKta~v~~la~~i~~ 253 (854)
++|+|.||+|||++++.|+..+..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 589999999999999999998754
No 495
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.59 E-value=0.016 Score=59.18 Aligned_cols=39 Identities=8% Similarity=0.067 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHH
Q 003038 213 EDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIE 252 (854)
Q Consensus 213 ~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~ 252 (854)
+++...+....+ .+.+++++||+|+|||++.+.++..+.
T Consensus 12 ~~~~~~l~~~v~-~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 12 PLQAAYLWLAVE-ARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred HHHHHHHHHHHh-CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 456667776665 577899999999999999999997764
No 496
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.59 E-value=0.099 Score=60.51 Aligned_cols=97 Identities=18% Similarity=0.149 Sum_probs=55.5
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHh--CCCCceEEEccccccCcCCCccccc-cccccCCCCCC-chH-HHHHHHHHc-C
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVF--GSHNNFVSIALSSFSSTRADSTEDS-RNKRSRDEQSC-SYI-ERFAEAVSN-N 731 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lf--g~~~~~i~id~s~~~~~~~~s~e~~-~~~rl~~~~g~-g~~-e~L~eav~~-~ 731 (854)
..++|.||+|+|||+++..||..+- .....+..+++..|... ..+.. ...+..+-+.+ .+. +.+...+++ .
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~---a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~ 298 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIG---AVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR 298 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHH---HHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC
Confidence 4899999999999999999987653 33456666776655310 00000 00111110111 111 245555543 4
Q ss_pred CCEEEEEecCCCC--CHHHHHHHHHhhh
Q 003038 732 PHRVFLIEDVEQA--DYCSQKGFKRAIE 757 (854)
Q Consensus 732 p~~ViliDEieka--~~~v~~~Ll~~le 757 (854)
.+.+||||-.-.. +......|.+.++
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~ 326 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIE 326 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence 6899999977654 4445566777776
No 497
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.56 E-value=0.11 Score=56.74 Aligned_cols=127 Identities=13% Similarity=0.077 Sum_probs=72.7
Q ss_pred HHHhhcCcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHh---CC---C
Q 003038 612 LCNALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVF---GS---H 685 (854)
Q Consensus 612 L~~~L~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lf---g~---~ 685 (854)
+......+.||...|...+...-... ..|++ .| ...+|++|++|.|||++++...+.-- +. .
T Consensus 28 I~~i~~~rWIgY~~A~~~L~~L~~Ll----~~P~~-------~R-mp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~ 95 (302)
T PF05621_consen 28 IAYIRADRWIGYPRAKEALDRLEELL----EYPKR-------HR-MPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAER 95 (302)
T ss_pred HHHHhcCCeecCHHHHHHHHHHHHHH----hCCcc-------cC-CCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCcc
Confidence 33344689999998876655443322 23321 12 24799999999999999999987441 11 1
Q ss_pred CceEEEccccccCcCCCccccccccc----cCCCCCC----chHH-HHHHHHHcCCCEEEEEecCCCC---CHHHHHHHH
Q 003038 686 NNFVSIALSSFSSTRADSTEDSRNKR----SRDEQSC----SYIE-RFAEAVSNNPHRVFLIEDVEQA---DYCSQKGFK 753 (854)
Q Consensus 686 ~~~i~id~s~~~~~~~~s~e~~~~~r----l~~~~g~----g~~e-~L~eav~~~p~~ViliDEieka---~~~v~~~Ll 753 (854)
-+++.+.|..-.+ +...... +..|... .-.+ +..+.++...-++++||||+.+ ...-|..++
T Consensus 96 ~PVv~vq~P~~p~------~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~L 169 (302)
T PF05621_consen 96 IPVVYVQMPPEPD------ERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFL 169 (302)
T ss_pred ccEEEEecCCCCC------hHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHH
Confidence 2466666653331 2211111 1112111 1112 4557788888899999999974 333344444
Q ss_pred Hhh
Q 003038 754 RAI 756 (854)
Q Consensus 754 ~~l 756 (854)
.+|
T Consensus 170 n~L 172 (302)
T PF05621_consen 170 NAL 172 (302)
T ss_pred HHH
Confidence 444
No 498
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.55 E-value=0.066 Score=58.13 Aligned_cols=83 Identities=12% Similarity=0.123 Sum_probs=60.3
Q ss_pred HHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHH
Q 003038 214 DVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVR 293 (854)
Q Consensus 214 ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~ 293 (854)
-|-|+..||.. .+-|.+|||.+|+||.++++-.| -| .+..++.+.+.. .-...+|.+-||.++..+-
T Consensus 19 hi~ri~RvL~~-~~Gh~LLvG~~GsGr~sl~rLaa-~i---------~~~~~~~i~~~~--~y~~~~f~~dLk~~~~~ag 85 (268)
T PF12780_consen 19 HIARISRVLSQ-PRGHALLVGVGGSGRQSLARLAA-FI---------CGYEVFQIEITK--GYSIKDFKEDLKKALQKAG 85 (268)
T ss_dssp HHHHHHHHHCS-TTEEEEEECTTTSCHHHHHHHHH-HH---------TTEEEE-TTTST--TTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCCCeEEecCCCccHHHHHHHHH-HH---------hccceEEEEeeC--CcCHHHHHHHHHHHHHHHh
Confidence 46778888874 66889999999999999998444 33 578899888653 1146788888988887765
Q ss_pred hhhCCCeEEEeCccccc
Q 003038 294 SCLGRGIVLNLGDLEWA 310 (854)
Q Consensus 294 ~~~~~~~ILfidel~~l 310 (854)
-. ++++++++.|-+-.
T Consensus 86 ~~-~~~~vfll~d~qi~ 101 (268)
T PF12780_consen 86 IK-GKPTVFLLTDSQIV 101 (268)
T ss_dssp CS--S-EEEEEECCCSS
T ss_pred cc-CCCeEEEecCcccc
Confidence 43 67899999885544
No 499
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.54 E-value=0.017 Score=58.30 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=22.4
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHH
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
.+.++|.|+||+|||++++.|+.+.
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4578999999999999999999874
No 500
>PRK06217 hypothetical protein; Validated
Probab=95.54 E-value=0.028 Score=57.26 Aligned_cols=56 Identities=11% Similarity=0.150 Sum_probs=38.6
Q ss_pred CceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccccc-ccc----cchHHHHHHHHHHHHHHHh
Q 003038 229 NFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISS-FRH----MNRVEVEQRVEEIKNLVRS 294 (854)
Q Consensus 229 n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~-l~~----~~rge~E~rl~~l~~~~~~ 294 (854)
+++|+|.||+|||++++.|+.++ |..++++|--. ... ..++..+.++..+.+.+..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l----------~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL----------DIPHLDTDDYFWLPTDPPFTTKRPPEERLRLLLEDLRP 63 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc----------CCcEEEcCceeeccCCCCccccCCHHHHHHHHHHHHhc
Confidence 48999999999999999999874 45566665211 111 1355667777777776643
Done!