Query 003038
Match_columns 854
No_of_seqs 415 out of 2880
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 11:02:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003038.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003038hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qvr_A CLPB protein; coiled co 100.0 8.1E-71 2.8E-75 679.7 33.6 646 7-782 1-710 (854)
2 3pxi_A Negative regulator of g 100.0 6.1E-70 2.1E-74 664.4 35.5 596 7-782 1-629 (758)
3 1r6b_X CLPA protein; AAA+, N-t 100.0 2.1E-67 7.1E-72 642.2 46.5 569 12-782 2-607 (758)
4 3pxg_A Negative regulator of g 100.0 2.7E-47 9.1E-52 440.1 21.5 357 7-419 1-384 (468)
5 4fcw_A Chaperone protein CLPB; 99.9 3.9E-21 1.3E-25 208.5 16.7 163 604-782 3-169 (311)
6 3cf2_A TER ATPase, transitiona 99.8 6.1E-20 2.1E-24 221.6 21.1 151 212-385 213-375 (806)
7 3fh2_A Probable ATP-dependent 99.8 1.5E-19 5.1E-24 175.9 17.5 140 7-166 2-143 (146)
8 3fes_A ATP-dependent CLP endop 99.8 2.2E-19 7.5E-24 174.6 12.8 138 7-165 3-142 (145)
9 2y1q_A CLPC N-domain, negative 99.8 5.1E-19 1.8E-23 172.5 14.0 139 7-166 1-141 (150)
10 1khy_A CLPB protein; alpha hel 99.8 1.1E-18 3.9E-23 169.6 16.0 141 7-165 1-142 (148)
11 3zri_A CLPB protein, CLPV; cha 99.7 1E-17 3.4E-22 167.2 13.9 140 4-165 17-162 (171)
12 1ypw_A Transitional endoplasmi 99.7 1.3E-17 4.5E-22 203.9 12.6 152 211-385 209-375 (806)
13 1k6k_A ATP-dependent CLP prote 99.7 9.2E-17 3.1E-21 155.2 13.0 135 12-164 2-139 (143)
14 2p65_A Hypothetical protein PF 99.7 1.7E-17 5.8E-22 164.7 7.5 177 190-383 4-187 (187)
15 1jbk_A CLPB protein; beta barr 99.7 4.1E-17 1.4E-21 162.0 7.2 168 204-387 18-190 (195)
16 3hws_A ATP-dependent CLP prote 99.5 4.6E-15 1.6E-19 165.2 5.7 146 609-782 6-182 (363)
17 1um8_A ATP-dependent CLP prote 99.5 2E-14 6.9E-19 160.7 8.4 153 609-781 12-210 (376)
18 4b4t_J 26S protease regulatory 99.5 2.8E-13 9.4E-18 151.6 13.5 141 226-386 181-323 (405)
19 1ofh_A ATP-dependent HSL prote 99.4 2.4E-13 8.2E-18 146.6 11.4 152 609-781 6-176 (310)
20 4b4t_I 26S protease regulatory 99.4 6.7E-13 2.3E-17 149.0 13.1 141 226-386 215-357 (437)
21 4b4t_L 26S protease subunit RP 99.4 7.3E-13 2.5E-17 150.2 13.2 141 226-386 214-356 (437)
22 4b4t_M 26S protease regulatory 99.4 7.3E-13 2.5E-17 150.1 11.8 141 226-386 214-356 (434)
23 4b4t_H 26S protease regulatory 99.4 1.3E-12 4.4E-17 148.0 13.3 141 225-385 241-383 (467)
24 3syl_A Protein CBBX; photosynt 99.3 5.1E-12 1.8E-16 136.6 12.9 139 605-781 18-177 (309)
25 2bjv_A PSP operon transcriptio 99.3 1.7E-12 6E-17 137.6 8.2 142 618-782 6-150 (265)
26 4b4t_K 26S protease regulatory 99.3 4.8E-12 1.6E-16 143.3 11.5 135 226-380 205-341 (428)
27 3t15_A Ribulose bisphosphate c 99.2 2.2E-11 7.7E-16 131.6 10.9 137 624-786 13-168 (293)
28 3eie_A Vacuolar protein sortin 99.2 4E-11 1.4E-15 131.2 12.5 135 227-386 51-188 (322)
29 3cf2_A TER ATPase, transitiona 99.2 9.2E-12 3.2E-16 150.6 7.5 141 225-385 509-651 (806)
30 1ojl_A Transcriptional regulat 99.2 2.1E-11 7.2E-16 132.6 8.0 142 618-782 2-146 (304)
31 3vfd_A Spastin; ATPase, microt 99.2 5.2E-11 1.8E-15 133.8 11.4 151 211-386 120-286 (389)
32 1xwi_A SKD1 protein; VPS4B, AA 99.2 7.2E-11 2.5E-15 129.4 12.2 136 227-386 45-183 (322)
33 3n70_A Transport activator; si 99.2 4.3E-11 1.5E-15 115.5 9.0 114 618-781 1-114 (145)
34 3nbx_X ATPase RAVA; AAA+ ATPas 99.1 6.4E-11 2.2E-15 137.0 10.3 144 606-782 10-158 (500)
35 2qp9_X Vacuolar protein sortin 99.1 1E-10 3.5E-15 129.9 11.3 136 226-386 83-221 (355)
36 1g41_A Heat shock protein HSLU 99.1 1.9E-10 6.5E-15 130.6 12.5 80 610-698 7-88 (444)
37 3h4m_A Proteasome-activating n 99.1 3.5E-10 1.2E-14 120.8 13.7 153 211-386 22-192 (285)
38 3syl_A Protein CBBX; photosynt 99.1 2.6E-10 8.7E-15 123.2 12.0 142 225-386 65-208 (309)
39 3m6a_A ATP-dependent protease 99.1 4.5E-11 1.5E-15 140.1 6.5 147 614-784 77-235 (543)
40 3d8b_A Fidgetin-like protein 1 99.1 3.7E-10 1.3E-14 125.4 13.5 151 211-386 89-255 (357)
41 3pfi_A Holliday junction ATP-d 99.1 5.6E-10 1.9E-14 122.3 13.8 127 618-782 29-163 (338)
42 3co5_A Putative two-component 99.1 5.2E-11 1.8E-15 114.7 4.9 110 619-781 5-114 (143)
43 2zan_A Vacuolar protein sortin 99.1 3.3E-10 1.1E-14 129.6 11.7 137 226-386 166-305 (444)
44 4b4t_J 26S protease regulatory 99.1 7.4E-10 2.5E-14 123.9 13.7 130 618-789 148-303 (405)
45 1a5t_A Delta prime, HOLB; zinc 99.1 5.3E-10 1.8E-14 123.0 12.2 133 620-782 4-147 (334)
46 4b4t_L 26S protease subunit RP 99.0 2.7E-09 9.2E-14 121.0 17.4 130 618-789 181-336 (437)
47 2ce7_A Cell division protein F 99.0 7.1E-10 2.4E-14 127.4 12.7 140 227-386 49-190 (476)
48 3hu3_A Transitional endoplasmi 99.0 6.4E-10 2.2E-14 128.5 12.3 153 211-386 209-376 (489)
49 3cf0_A Transitional endoplasmi 99.0 6.1E-10 2.1E-14 120.7 10.2 142 225-386 47-190 (301)
50 4b4t_I 26S protease regulatory 99.0 3.3E-09 1.1E-13 119.2 16.3 130 618-789 182-337 (437)
51 2qz4_A Paraplegin; AAA+, SPG7, 99.0 1.7E-09 5.8E-14 113.7 12.8 143 225-386 37-181 (262)
52 2r44_A Uncharacterized protein 99.0 2.3E-09 7.9E-14 117.2 14.3 143 607-784 16-161 (331)
53 1hqc_A RUVB; extended AAA-ATPa 99.0 2.7E-09 9.1E-14 115.8 14.2 127 618-782 12-147 (324)
54 3b9p_A CG5977-PA, isoform A; A 99.0 1.5E-09 5E-14 116.7 11.7 135 226-385 53-192 (297)
55 4b4t_M 26S protease regulatory 99.0 2.1E-09 7.3E-14 121.8 13.5 130 618-789 181-336 (434)
56 2gno_A DNA polymerase III, gam 99.0 2.2E-09 7.6E-14 116.7 13.0 112 622-782 1-121 (305)
57 4b4t_H 26S protease regulatory 99.0 3.5E-09 1.2E-13 120.1 14.0 130 618-789 209-364 (467)
58 3eie_A Vacuolar protein sortin 98.9 2.2E-09 7.7E-14 117.3 11.7 136 618-783 18-164 (322)
59 4b4t_K 26S protease regulatory 98.9 2.3E-09 8E-14 121.3 11.7 130 618-789 172-327 (428)
60 1iqp_A RFCS; clamp loader, ext 98.9 3.7E-09 1.3E-13 114.4 12.4 118 618-782 25-149 (327)
61 1xwi_A SKD1 protein; VPS4B, AA 98.9 5.9E-09 2E-13 114.1 14.0 138 618-784 12-160 (322)
62 1lv7_A FTSH; alpha/beta domain 98.9 3.4E-09 1.2E-13 111.6 11.5 141 226-386 44-186 (257)
63 3h4m_A Proteasome-activating n 98.9 2.9E-09 9.9E-14 113.6 10.9 136 618-783 17-166 (285)
64 2qz4_A Paraplegin; AAA+, SPG7, 98.9 6.5E-09 2.2E-13 109.1 13.4 138 618-783 6-155 (262)
65 3t15_A Ribulose bisphosphate c 98.9 6.7E-10 2.3E-14 120.0 5.9 136 226-380 35-185 (293)
66 1ny5_A Transcriptional regulat 98.9 1.6E-09 5.5E-14 121.7 8.4 142 618-782 137-281 (387)
67 3f9v_A Minichromosome maintena 98.9 2.7E-10 9.1E-15 134.8 2.2 155 607-782 284-443 (595)
68 2chg_A Replication factor C sm 98.9 1E-08 3.5E-13 103.5 13.1 118 618-782 17-141 (226)
69 3vfd_A Spastin; ATPase, microt 98.9 4.8E-09 1.6E-13 117.7 11.3 134 618-782 115-261 (389)
70 3u61_B DNA polymerase accessor 98.9 4.2E-09 1.4E-13 114.7 10.3 117 618-784 26-147 (324)
71 2zan_A Vacuolar protein sortin 98.9 9.5E-09 3.3E-13 117.4 13.6 135 618-783 134-281 (444)
72 3cf0_A Transitional endoplasmi 98.9 5.1E-09 1.7E-13 113.4 10.7 127 619-783 16-164 (301)
73 3d8b_A Fidgetin-like protein 1 98.9 1E-08 3.4E-13 113.9 13.2 134 618-782 84-230 (357)
74 3b9p_A CG5977-PA, isoform A; A 98.9 1.1E-08 3.7E-13 109.9 13.0 135 618-782 21-168 (297)
75 2qp9_X Vacuolar protein sortin 98.9 5.8E-09 2E-13 115.7 10.9 136 618-783 51-197 (355)
76 3pvs_A Replication-associated 98.8 5.2E-09 1.8E-13 119.7 10.3 107 618-761 26-135 (447)
77 1d2n_A N-ethylmaleimide-sensit 98.8 1.6E-09 5.5E-14 115.2 5.7 135 614-782 29-176 (272)
78 1sxj_B Activator 1 37 kDa subu 98.8 6.8E-09 2.3E-13 112.1 10.7 116 619-782 22-146 (323)
79 1sxj_C Activator 1 40 kDa subu 98.8 1.4E-08 4.7E-13 111.7 13.2 114 619-782 26-149 (340)
80 2chq_A Replication factor C sm 98.8 3.3E-09 1.1E-13 114.4 7.7 117 619-782 18-141 (319)
81 1sxj_D Activator 1 41 kDa subu 98.8 7.2E-09 2.5E-13 113.6 10.4 129 618-782 37-172 (353)
82 4akg_A Glutathione S-transfera 98.8 1.3E-07 4.4E-12 127.0 23.7 105 619-763 1587-1698(2695)
83 2p65_A Hypothetical protein PF 98.8 8.1E-09 2.8E-13 101.7 9.3 119 616-781 20-160 (187)
84 1jbk_A CLPB protein; beta barr 98.8 8.2E-09 2.8E-13 101.7 9.4 119 616-781 20-159 (195)
85 1jr3_A DNA polymerase III subu 98.8 2.8E-08 9.6E-13 109.7 14.2 136 618-782 16-158 (373)
86 2r62_A Cell division protease 98.8 8.6E-10 3E-14 116.7 1.6 139 226-386 43-187 (268)
87 3uk6_A RUVB-like 2; hexameric 98.8 4.7E-08 1.6E-12 108.0 14.5 66 618-697 44-109 (368)
88 1njg_A DNA polymerase III subu 98.8 5.3E-08 1.8E-12 99.3 13.2 134 618-782 23-165 (250)
89 3hu3_A Transitional endoplasmi 98.7 1.4E-08 4.8E-13 117.3 9.2 134 618-783 204-350 (489)
90 2ce7_A Cell division protein F 98.7 5.4E-08 1.8E-12 111.8 14.0 134 618-784 16-165 (476)
91 1lv7_A FTSH; alpha/beta domain 98.7 4.3E-08 1.5E-12 103.2 12.2 137 618-785 12-162 (257)
92 2r62_A Cell division protease 98.7 4.8E-09 1.6E-13 111.0 4.9 130 618-784 11-162 (268)
93 1g8p_A Magnesium-chelatase 38 98.7 2E-08 6.7E-13 110.1 9.6 50 733-782 145-196 (350)
94 3dzd_A Transcriptional regulat 98.7 1.4E-08 4.6E-13 113.4 8.2 140 618-781 129-271 (368)
95 2c9o_A RUVB-like 1; hexameric 98.7 1.7E-08 5.8E-13 115.7 8.3 76 227-313 63-142 (456)
96 1d2n_A N-ethylmaleimide-sensit 98.7 1.3E-07 4.6E-12 100.3 14.7 115 224-358 61-179 (272)
97 2c9o_A RUVB-like 1; hexameric 98.7 2.9E-08 9.9E-13 113.8 10.0 98 618-746 37-140 (456)
98 2v1u_A Cell division control p 98.7 2.3E-08 7.9E-13 110.5 8.7 157 211-386 24-205 (387)
99 1sxj_E Activator 1 40 kDa subu 98.7 3.1E-08 1.1E-12 108.9 9.6 136 618-783 14-174 (354)
100 2dhr_A FTSH; AAA+ protein, hex 98.7 5.5E-08 1.9E-12 112.4 10.9 140 227-386 64-205 (499)
101 3te6_A Regulatory protein SIR3 98.6 5.3E-08 1.8E-12 106.2 9.9 102 210-311 24-145 (318)
102 3k1j_A LON protease, ATP-depen 98.6 3.7E-08 1.3E-12 116.9 9.1 52 731-782 200-261 (604)
103 3pvs_A Replication-associated 98.6 4.8E-08 1.6E-12 111.7 9.6 127 216-384 39-167 (447)
104 1fnn_A CDC6P, cell division co 98.6 1.6E-07 5.6E-12 103.9 13.7 144 618-783 17-169 (389)
105 3n70_A Transport activator; si 98.6 1.6E-08 5.6E-13 97.3 4.7 108 211-356 6-116 (145)
106 1sxj_A Activator 1 95 kDa subu 98.6 3.9E-08 1.3E-12 114.5 8.8 131 618-759 39-178 (516)
107 1ypw_A Transitional endoplasmi 98.6 1E-08 3.4E-13 125.5 3.6 139 226-384 510-650 (806)
108 2x8a_A Nuclear valosin-contain 98.6 1.4E-07 4.9E-12 100.8 11.3 134 226-383 43-181 (274)
109 2chg_A Replication factor C sm 98.6 1.3E-07 4.4E-12 95.4 10.3 143 211-386 22-165 (226)
110 2qby_A CDC6 homolog 1, cell di 98.6 1.7E-07 5.7E-12 103.4 10.8 153 211-386 25-201 (386)
111 2qby_B CDC6 homolog 3, cell di 98.5 1.6E-07 5.6E-12 104.0 9.8 137 618-783 20-174 (384)
112 1fnn_A CDC6P, cell division co 98.5 4.6E-07 1.6E-11 100.3 13.2 147 211-385 22-196 (389)
113 3uk6_A RUVB-like 2; hexameric 98.5 7.6E-08 2.6E-12 106.4 5.8 146 211-386 49-263 (368)
114 3pxg_A Negative regulator of g 98.5 2E-07 6.9E-12 107.2 9.5 114 618-782 180-300 (468)
115 3pfi_A Holliday junction ATP-d 98.5 2.8E-07 9.5E-12 100.7 9.6 132 211-386 34-188 (338)
116 2v1u_A Cell division control p 98.4 2E-07 7E-12 102.8 7.6 140 618-783 19-177 (387)
117 1ixz_A ATP-dependent metallopr 98.4 6.9E-07 2.4E-11 93.7 11.1 138 227-385 49-189 (254)
118 2qby_B CDC6 homolog 3, cell di 98.4 4.9E-07 1.7E-11 100.1 10.1 151 211-386 25-201 (384)
119 3co5_A Putative two-component 98.4 7.6E-08 2.6E-12 92.4 2.8 105 211-356 9-116 (143)
120 3te6_A Regulatory protein SIR3 98.4 8E-07 2.7E-11 96.9 11.2 139 619-788 21-178 (318)
121 2dhr_A FTSH; AAA+ protein, hex 98.4 8.5E-07 2.9E-11 102.4 11.3 129 618-783 31-179 (499)
122 1qvr_A CLPB protein; coiled co 98.4 6.4E-07 2.2E-11 110.5 10.6 111 618-762 170-301 (854)
123 1r6b_X CLPA protein; AAA+, N-t 98.4 6.2E-07 2.1E-11 109.1 10.3 61 94-167 2-62 (758)
124 1l8q_A Chromosomal replication 98.4 3.2E-07 1.1E-11 99.9 6.6 127 226-386 36-170 (324)
125 1hqc_A RUVB; extended AAA-ATPa 98.4 1.1E-06 3.9E-11 95.0 10.7 133 211-386 17-172 (324)
126 1njg_A DNA polymerase III subu 98.3 1.8E-06 6.1E-11 87.8 11.3 144 211-386 28-189 (250)
127 2bjv_A PSP operon transcriptio 98.3 4.3E-07 1.5E-11 95.8 6.3 91 211-310 11-112 (265)
128 1in4_A RUVB, holliday junction 98.3 3.2E-06 1.1E-10 92.7 13.3 104 619-760 26-130 (334)
129 3u61_B DNA polymerase accessor 98.3 8E-07 2.7E-11 96.6 8.4 137 206-384 24-167 (324)
130 3bos_A Putative DNA replicatio 98.3 9.1E-07 3.1E-11 90.8 8.4 78 658-758 53-132 (242)
131 1ofh_A ATP-dependent HSL prote 98.3 5.9E-07 2E-11 96.3 7.0 155 211-385 20-205 (310)
132 1iy2_A ATP-dependent metallopr 98.3 1.9E-06 6.5E-11 91.8 10.8 139 227-386 73-214 (278)
133 3fh2_A Probable ATP-dependent 98.3 1.3E-06 4.5E-11 84.3 8.6 65 10-77 80-144 (146)
134 3m6a_A ATP-dependent protease 98.3 2E-07 6.8E-12 109.2 3.2 127 227-386 108-257 (543)
135 3pxi_A Negative regulator of g 98.3 1.1E-06 3.6E-11 107.1 9.5 114 618-782 180-300 (758)
136 3ec2_A DNA replication protein 98.3 2.4E-06 8.1E-11 84.7 10.2 101 658-782 39-142 (180)
137 2qby_A CDC6 homolog 1, cell di 98.3 6.5E-07 2.2E-11 98.6 6.6 138 618-782 20-172 (386)
138 1sxj_A Activator 1 95 kDa subu 98.3 8.1E-07 2.8E-11 103.4 7.6 139 211-386 44-213 (516)
139 3fes_A ATP-dependent CLP endop 98.3 1E-06 3.6E-11 84.9 6.9 64 10-76 80-143 (145)
140 1l8q_A Chromosomal replication 98.2 2.6E-06 8.9E-11 92.6 10.3 87 658-758 38-126 (324)
141 3f8t_A Predicted ATPase involv 98.2 8.1E-07 2.8E-11 100.7 6.1 146 607-784 203-350 (506)
142 3hws_A ATP-dependent CLP prote 98.2 9.7E-07 3.3E-11 97.8 6.4 75 226-312 50-131 (363)
143 2x8a_A Nuclear valosin-contain 98.2 9.7E-06 3.3E-10 86.5 13.7 95 660-783 47-156 (274)
144 1ojl_A Transcriptional regulat 98.2 4.3E-07 1.5E-11 98.5 2.3 141 211-383 7-174 (304)
145 1ixz_A ATP-dependent metallopr 98.2 3.4E-06 1.1E-10 88.4 8.9 96 660-782 52-163 (254)
146 1sxj_B Activator 1 37 kDa subu 98.2 4.3E-06 1.5E-10 90.0 9.5 139 211-386 26-170 (323)
147 2z4s_A Chromosomal replication 98.1 5.2E-06 1.8E-10 94.6 9.7 88 658-758 131-222 (440)
148 2chq_A Replication factor C sm 98.1 1.8E-06 6.2E-11 92.8 5.3 142 211-385 22-164 (319)
149 2w58_A DNAI, primosome compone 98.1 2.4E-06 8.1E-11 86.2 5.9 86 658-757 55-143 (202)
150 2z4s_A Chromosomal replication 98.1 2.4E-06 8.3E-11 97.4 6.6 141 216-386 118-267 (440)
151 1w5s_A Origin recognition comp 98.1 7.4E-06 2.5E-10 91.4 10.5 137 211-360 27-193 (412)
152 2y1q_A CLPC N-domain, negative 98.1 7.4E-06 2.5E-10 79.0 8.8 66 10-78 78-143 (150)
153 1iqp_A RFCS; clamp loader, ext 98.1 4.3E-06 1.5E-10 90.1 7.9 139 211-383 30-170 (327)
154 1iy2_A ATP-dependent metallopr 98.1 7.3E-06 2.5E-10 87.2 9.3 67 660-744 76-144 (278)
155 1sxj_D Activator 1 41 kDa subu 98.1 7E-06 2.4E-10 89.6 8.9 140 211-383 42-193 (353)
156 1um8_A ATP-dependent CLP prote 98.0 8.3E-06 2.9E-10 90.6 9.4 75 226-312 71-152 (376)
157 1jr3_A DNA polymerase III subu 98.0 1.1E-05 3.9E-10 88.7 10.0 141 211-383 21-179 (373)
158 2kjq_A DNAA-related protein; s 98.0 7.9E-06 2.7E-10 79.1 7.3 72 659-758 38-109 (149)
159 3bos_A Putative DNA replicatio 97.9 1E-05 3.6E-10 82.8 7.0 82 212-312 37-119 (242)
160 2r44_A Uncharacterized protein 97.9 3.4E-06 1.2E-10 91.9 2.1 134 211-386 32-189 (331)
161 2qgz_A Helicase loader, putati 97.9 5.8E-06 2E-10 89.8 3.9 40 658-697 153-193 (308)
162 1k6k_A ATP-dependent CLP prote 97.9 2.4E-05 8.4E-10 74.7 7.5 61 10-73 78-138 (143)
163 2fna_A Conserved hypothetical 97.8 4.4E-05 1.5E-09 82.9 9.7 37 211-251 18-54 (357)
164 1w5s_A Origin recognition comp 97.8 3E-05 1E-09 86.4 8.4 140 618-781 22-187 (412)
165 1g8p_A Magnesium-chelatase 38 97.7 2.1E-05 7.3E-10 85.8 5.5 31 222-252 40-70 (350)
166 1khy_A CLPB protein; alpha hel 97.7 7E-05 2.4E-09 71.9 8.3 61 10-74 81-141 (148)
167 4fcw_A Chaperone protein CLPB; 97.7 6.7E-05 2.3E-09 80.5 8.4 89 211-310 22-131 (311)
168 2qen_A Walker-type ATPase; unk 97.7 8E-05 2.7E-09 80.7 8.6 38 211-250 17-54 (350)
169 2w58_A DNAI, primosome compone 97.7 3.6E-05 1.2E-09 77.4 5.4 86 214-310 37-127 (202)
170 3ec2_A DNA replication protein 97.6 1.8E-05 6.1E-10 78.3 2.9 76 225-310 36-112 (180)
171 1a5t_A Delta prime, HOLB; zinc 97.6 0.00027 9.2E-09 77.3 12.5 147 211-386 7-171 (334)
172 1sxj_C Activator 1 40 kDa subu 97.6 0.00011 3.8E-09 80.4 8.8 133 211-380 30-167 (340)
173 1sxj_E Activator 1 40 kDa subu 97.6 0.0001 3.5E-09 80.7 7.8 43 211-253 19-62 (354)
174 1tue_A Replication protein E1; 97.5 0.00012 4.2E-09 74.4 6.6 25 659-683 60-84 (212)
175 1g41_A Heat shock protein HSLU 97.4 8.7E-05 3E-09 84.2 4.8 69 226-310 49-119 (444)
176 4akg_A Glutathione S-transfera 97.3 0.00053 1.8E-08 92.6 11.8 99 660-782 648-756 (2695)
177 2qgz_A Helicase loader, putati 97.3 0.00011 3.9E-09 79.6 3.8 73 227-310 152-226 (308)
178 3nbx_X ATPase RAVA; AAA+ ATPas 97.1 8.3E-05 2.8E-09 85.9 0.8 39 211-251 27-65 (500)
179 2vhj_A Ntpase P4, P4; non- hyd 97.1 0.00031 1.1E-08 76.3 5.2 73 226-310 122-194 (331)
180 3f9v_A Minichromosome maintena 97.1 2.2E-05 7.4E-10 92.9 -5.2 23 229-251 329-351 (595)
181 2gno_A DNA polymerase III, gam 97.0 0.0026 8.8E-08 68.8 11.5 87 215-310 6-94 (305)
182 1in4_A RUVB, holliday junction 97.0 0.0012 4E-08 72.2 8.8 64 228-311 52-116 (334)
183 1u0j_A DNA replication protein 97.0 0.00086 2.9E-08 71.0 7.1 90 658-782 105-199 (267)
184 2qen_A Walker-type ATPase; unk 97.0 0.0015 5.2E-08 70.5 9.2 52 619-695 13-64 (350)
185 3zri_A CLPB protein, CLPV; cha 97.0 0.0014 4.9E-08 64.8 8.1 61 94-168 25-87 (171)
186 3jvv_A Twitching mobility prot 97.0 0.0017 5.9E-08 71.7 9.4 99 656-761 122-223 (356)
187 2kjq_A DNAA-related protein; s 96.9 0.00071 2.4E-08 65.2 5.2 61 226-310 35-95 (149)
188 1jr3_D DNA polymerase III, del 96.9 0.0036 1.2E-07 68.3 11.4 94 658-784 19-118 (343)
189 3vkg_A Dynein heavy chain, cyt 96.9 0.0012 4.2E-08 89.7 8.5 117 659-782 1306-1431(3245)
190 3upu_A ATP-dependent DNA helic 96.9 0.0046 1.6E-07 70.5 12.1 116 621-757 28-153 (459)
191 2fna_A Conserved hypothetical 96.8 0.0036 1.2E-07 67.6 10.5 35 659-696 32-66 (357)
192 2vhj_A Ntpase P4, P4; non- hyd 96.8 0.0033 1.1E-07 68.3 9.9 72 659-746 125-196 (331)
193 3k1j_A LON protease, ATP-depen 96.8 0.0014 4.9E-08 77.5 7.6 41 211-252 45-85 (604)
194 2orw_A Thymidine kinase; TMTK, 96.8 0.00053 1.8E-08 68.5 3.3 93 659-759 5-103 (184)
195 2b8t_A Thymidine kinase; deoxy 96.7 0.0038 1.3E-07 64.4 9.0 98 657-759 12-116 (223)
196 1z6t_A APAF-1, apoptotic prote 96.7 0.0011 3.8E-08 77.7 5.2 40 211-250 129-170 (591)
197 3dzd_A Transcriptional regulat 96.7 0.0036 1.2E-07 69.5 8.9 53 213-274 139-191 (368)
198 3a8t_A Adenylate isopentenyltr 96.6 0.002 6.8E-08 70.4 6.4 78 226-305 39-137 (339)
199 3vkg_A Dynein heavy chain, cyt 96.6 0.0055 1.9E-07 83.6 11.4 99 661-782 608-716 (3245)
200 2eyu_A Twitching motility prot 96.6 0.0067 2.3E-07 64.0 9.9 98 656-759 24-123 (261)
201 1ye8_A Protein THEP1, hypothet 96.5 0.0024 8.2E-08 63.4 5.8 23 659-681 2-24 (178)
202 1qhx_A CPT, protein (chloramph 96.4 0.0043 1.5E-07 60.5 6.7 25 227-251 3-27 (178)
203 1ny5_A Transcriptional regulat 96.3 0.01 3.4E-07 66.3 9.9 52 215-274 149-200 (387)
204 2ewv_A Twitching motility prot 96.3 0.0084 2.9E-07 66.6 9.0 98 656-760 135-235 (372)
205 1sky_E F1-ATPase, F1-ATP synth 96.2 0.012 4.1E-07 67.0 9.7 36 218-253 141-177 (473)
206 3trf_A Shikimate kinase, SK; a 95.9 0.0047 1.6E-07 60.7 4.1 34 226-269 4-37 (185)
207 2pt7_A CAG-ALFA; ATPase, prote 95.9 0.011 3.7E-07 64.5 7.1 92 658-760 172-265 (330)
208 3exa_A TRNA delta(2)-isopenten 95.8 0.012 4.1E-07 63.6 6.8 77 227-305 3-99 (322)
209 1xx6_A Thymidine kinase; NESG, 95.8 0.009 3.1E-07 60.1 5.5 94 658-759 9-108 (191)
210 3eph_A TRNA isopentenyltransfe 95.7 0.02 6.7E-07 64.0 8.4 76 228-305 3-98 (409)
211 3kl4_A SRP54, signal recogniti 95.7 0.097 3.3E-06 59.1 14.0 42 656-697 96-137 (433)
212 3crm_A TRNA delta(2)-isopenten 95.6 0.019 6.6E-07 62.4 7.9 67 227-305 5-101 (323)
213 2a5y_B CED-4; apoptosis; HET: 95.6 0.018 6E-07 67.2 8.0 39 211-249 133-174 (549)
214 3dm5_A SRP54, signal recogniti 95.6 0.1 3.5E-06 59.0 13.8 91 656-746 99-196 (443)
215 3cmu_A Protein RECA, recombina 95.3 0.02 6.7E-07 75.4 7.7 91 212-310 1412-1517(2050)
216 3ice_A Transcription terminati 95.2 0.062 2.1E-06 59.7 10.2 38 216-253 162-200 (422)
217 3ney_A 55 kDa erythrocyte memb 95.2 0.024 8.1E-07 57.3 6.4 26 226-251 18-43 (197)
218 3lw7_A Adenylate kinase relate 95.2 0.016 5.6E-07 55.4 5.1 91 659-757 3-100 (179)
219 1p9r_A General secretion pathw 95.2 0.067 2.3E-06 60.2 10.6 96 656-761 166-263 (418)
220 3vaa_A Shikimate kinase, SK; s 95.1 0.013 4.4E-07 58.6 4.2 34 226-269 24-57 (199)
221 2w0m_A SSO2452; RECA, SSPF, un 95.1 0.034 1.2E-06 56.1 7.4 35 658-692 24-58 (235)
222 1qhx_A CPT, protein (chloramph 95.1 0.011 3.7E-07 57.6 3.3 34 659-695 5-38 (178)
223 1gvn_B Zeta; postsegregational 95.0 0.058 2E-06 57.5 9.0 25 227-251 33-57 (287)
224 1tue_A Replication protein E1; 95.0 0.015 5.1E-07 59.1 4.1 26 226-251 57-82 (212)
225 2a5y_B CED-4; apoptosis; HET: 95.0 0.036 1.2E-06 64.5 8.0 44 621-679 131-174 (549)
226 3e1s_A Exodeoxyribonuclease V, 94.9 0.036 1.2E-06 65.0 7.7 97 658-759 205-306 (574)
227 3cmw_A Protein RECA, recombina 94.9 0.03 1E-06 72.8 7.4 80 226-312 1081-1175(1706)
228 1y63_A LMAJ004144AAA protein; 94.8 0.019 6.4E-07 56.7 4.4 36 225-269 8-43 (184)
229 3iij_A Coilin-interacting nucl 94.8 0.022 7.5E-07 55.7 4.7 26 226-251 10-35 (180)
230 1kgd_A CASK, peripheral plasma 94.8 0.056 1.9E-06 53.1 7.7 25 227-251 5-29 (180)
231 2yvu_A Probable adenylyl-sulfa 94.8 0.053 1.8E-06 53.3 7.4 27 227-253 13-39 (186)
232 3trf_A Shikimate kinase, SK; a 94.8 0.019 6.5E-07 56.2 4.2 24 658-681 6-29 (185)
233 1vt4_I APAF-1 related killer D 94.7 0.07 2.4E-06 66.2 9.7 40 211-250 133-173 (1221)
234 2w0m_A SSO2452; RECA, SSPF, un 94.7 0.046 1.6E-06 55.0 7.1 27 226-252 22-48 (235)
235 3cmu_A Protein RECA, recombina 94.6 0.042 1.4E-06 72.4 7.9 84 658-742 1428-1515(2050)
236 3foz_A TRNA delta(2)-isopenten 94.6 0.069 2.4E-06 57.6 8.4 65 229-305 12-106 (316)
237 1via_A Shikimate kinase; struc 94.6 0.024 8.1E-07 55.2 4.4 24 228-251 5-28 (175)
238 2xxa_A Signal recognition part 94.6 0.12 4.1E-06 58.5 10.7 98 655-753 98-206 (433)
239 2r2a_A Uncharacterized protein 94.6 0.016 5.4E-07 58.6 3.1 21 230-250 8-28 (199)
240 3tau_A Guanylate kinase, GMP k 94.6 0.037 1.3E-06 55.8 5.9 27 225-251 6-32 (208)
241 2ze6_A Isopentenyl transferase 94.6 0.063 2.1E-06 56.0 7.7 23 229-251 3-25 (253)
242 1n0w_A DNA repair protein RAD5 94.6 0.085 2.9E-06 53.7 8.6 26 226-251 23-48 (243)
243 3vaa_A Shikimate kinase, SK; s 94.5 0.024 8.1E-07 56.7 4.2 24 658-681 26-49 (199)
244 4a74_A DNA repair and recombin 94.5 0.044 1.5E-06 55.3 6.3 37 658-694 26-68 (231)
245 1rz3_A Hypothetical protein rb 94.5 0.053 1.8E-06 54.3 6.7 40 657-696 22-61 (201)
246 2i3b_A HCR-ntpase, human cance 94.4 0.015 5E-07 58.3 2.4 24 659-682 3-26 (189)
247 1nks_A Adenylate kinase; therm 94.4 0.024 8.1E-07 55.6 3.8 37 659-695 3-39 (194)
248 1knq_A Gluconate kinase; ALFA/ 94.4 0.037 1.3E-06 53.7 5.1 35 657-696 8-42 (175)
249 2iyv_A Shikimate kinase, SK; t 94.3 0.03 1E-06 54.9 4.4 32 228-269 3-34 (184)
250 2p5t_B PEZT; postsegregational 94.3 0.089 3E-06 54.7 8.1 24 228-251 33-56 (253)
251 2j9r_A Thymidine kinase; TK1, 94.3 0.032 1.1E-06 57.0 4.4 97 659-760 30-129 (214)
252 3t61_A Gluconokinase; PSI-biol 94.2 0.038 1.3E-06 55.1 5.0 26 226-251 17-42 (202)
253 1zuh_A Shikimate kinase; alpha 94.2 0.03 1E-06 54.0 4.0 24 228-251 8-31 (168)
254 3lw7_A Adenylate kinase relate 94.1 0.031 1E-06 53.5 3.9 22 228-250 2-23 (179)
255 3e1s_A Exodeoxyribonuclease V, 94.1 0.16 5.6E-06 59.5 10.8 28 226-253 203-230 (574)
256 1u0j_A DNA replication protein 94.1 0.035 1.2E-06 58.6 4.6 41 207-250 84-127 (267)
257 3uie_A Adenylyl-sulfate kinase 94.1 0.041 1.4E-06 54.9 4.9 40 657-696 25-64 (200)
258 2p5t_B PEZT; postsegregational 94.1 0.055 1.9E-06 56.3 6.1 37 658-697 33-69 (253)
259 1m7g_A Adenylylsulfate kinase; 94.1 0.074 2.5E-06 53.5 6.8 28 225-252 23-50 (211)
260 2rhm_A Putative kinase; P-loop 94.1 0.031 1.1E-06 54.9 3.9 24 658-681 6-29 (193)
261 3sfz_A APAF-1, apoptotic pepti 94.0 0.085 2.9E-06 66.7 8.8 41 211-251 129-171 (1249)
262 1j8m_F SRP54, signal recogniti 94.0 0.22 7.4E-06 53.4 10.7 88 657-745 98-193 (297)
263 3kb2_A SPBC2 prophage-derived 94.0 0.027 9.1E-07 54.2 3.2 23 229-251 3-25 (173)
264 1zu4_A FTSY; GTPase, signal re 94.0 0.1 3.6E-06 56.5 8.2 42 655-696 103-144 (320)
265 1kht_A Adenylate kinase; phosp 94.0 0.032 1.1E-06 54.6 3.8 24 659-682 5-28 (192)
266 1gvn_B Zeta; postsegregational 94.0 0.065 2.2E-06 57.1 6.4 36 658-696 34-69 (287)
267 2fz4_A DNA repair protein RAD2 93.9 0.091 3.1E-06 54.2 7.3 22 660-681 111-132 (237)
268 2r2a_A Uncharacterized protein 93.9 0.071 2.4E-06 53.8 6.3 23 659-681 7-29 (199)
269 3hr8_A Protein RECA; alpha and 93.8 0.18 6.1E-06 55.5 9.7 86 658-746 62-153 (356)
270 1n0w_A DNA repair protein RAD5 93.8 0.066 2.2E-06 54.5 5.9 38 658-695 25-68 (243)
271 3kb2_A SPBC2 prophage-derived 93.8 0.035 1.2E-06 53.3 3.6 23 659-681 3-25 (173)
272 1z6t_A APAF-1, apoptotic prote 93.8 0.23 7.9E-06 57.8 11.2 45 618-678 124-168 (591)
273 3p32_A Probable GTPase RV1496/ 93.7 0.23 7.7E-06 54.5 10.3 40 214-253 64-105 (355)
274 2ze6_A Isopentenyl transferase 93.7 0.045 1.5E-06 57.1 4.5 31 659-692 3-33 (253)
275 2c95_A Adenylate kinase 1; tra 93.7 0.045 1.5E-06 53.8 4.3 26 226-251 8-33 (196)
276 1e6c_A Shikimate kinase; phosp 93.6 0.051 1.7E-06 52.4 4.5 24 228-251 3-26 (173)
277 1ex7_A Guanylate kinase; subst 93.6 0.036 1.2E-06 55.4 3.4 24 228-251 2-25 (186)
278 3d3q_A TRNA delta(2)-isopenten 93.6 0.15 5.2E-06 55.7 8.5 76 228-305 8-103 (340)
279 1aky_A Adenylate kinase; ATP:A 93.6 0.049 1.7E-06 55.1 4.4 26 226-251 3-28 (220)
280 3e70_C DPA, signal recognition 93.6 0.13 4.5E-06 55.9 8.1 37 656-692 128-164 (328)
281 2zr9_A Protein RECA, recombina 93.5 0.12 4E-06 56.8 7.7 41 213-253 47-87 (349)
282 3t61_A Gluconokinase; PSI-biol 93.5 0.046 1.6E-06 54.5 4.1 34 658-696 19-52 (202)
283 3b9q_A Chloroplast SRP recepto 93.5 0.17 5.9E-06 54.3 8.8 33 656-688 99-131 (302)
284 4eun_A Thermoresistant glucoki 93.5 0.056 1.9E-06 53.9 4.6 34 658-696 30-63 (200)
285 1kag_A SKI, shikimate kinase I 93.5 0.039 1.3E-06 53.3 3.3 25 227-251 4-28 (173)
286 3c8u_A Fructokinase; YP_612366 93.5 0.067 2.3E-06 53.7 5.2 25 658-682 23-47 (208)
287 2j37_W Signal recognition part 93.4 0.23 7.9E-06 57.1 10.1 41 656-696 100-140 (504)
288 2yvu_A Probable adenylyl-sulfa 93.4 0.073 2.5E-06 52.3 5.2 38 657-694 13-50 (186)
289 3iij_A Coilin-interacting nucl 93.4 0.056 1.9E-06 52.7 4.3 24 658-681 12-35 (180)
290 2cdn_A Adenylate kinase; phosp 93.4 0.055 1.9E-06 53.9 4.3 26 226-251 19-44 (201)
291 3uie_A Adenylyl-sulfate kinase 93.3 0.042 1.5E-06 54.8 3.4 29 224-252 22-50 (200)
292 1aky_A Adenylate kinase; ATP:A 93.3 0.048 1.6E-06 55.2 3.8 25 657-681 4-28 (220)
293 2cvh_A DNA repair and recombin 93.3 0.082 2.8E-06 52.9 5.5 73 225-310 18-117 (220)
294 3a4m_A L-seryl-tRNA(SEC) kinas 93.3 0.12 4.1E-06 54.0 6.9 27 227-253 4-30 (260)
295 2rhm_A Putative kinase; P-loop 93.2 0.04 1.4E-06 54.1 3.0 26 226-251 4-29 (193)
296 2orw_A Thymidine kinase; TMTK, 93.2 0.043 1.5E-06 54.6 3.1 25 229-253 5-29 (184)
297 1qf9_A UMP/CMP kinase, protein 93.2 0.052 1.8E-06 53.0 3.7 25 227-251 6-30 (194)
298 1zuh_A Shikimate kinase; alpha 93.1 0.061 2.1E-06 51.8 4.0 25 657-681 7-31 (168)
299 1kht_A Adenylate kinase; phosp 93.1 0.048 1.6E-06 53.3 3.4 26 227-252 3-28 (192)
300 3dl0_A Adenylate kinase; phosp 93.1 0.054 1.8E-06 54.5 3.8 22 229-250 2-23 (216)
301 2pez_A Bifunctional 3'-phospho 93.1 0.076 2.6E-06 51.8 4.8 37 658-694 6-42 (179)
302 4eun_A Thermoresistant glucoki 93.1 0.05 1.7E-06 54.3 3.5 27 225-251 27-53 (200)
303 1zp6_A Hypothetical protein AT 93.0 0.047 1.6E-06 53.6 3.2 36 658-696 10-45 (191)
304 2og2_A Putative signal recogni 93.0 0.23 7.7E-06 54.8 8.9 33 656-688 156-188 (359)
305 1ukz_A Uridylate kinase; trans 93.0 0.051 1.7E-06 54.1 3.4 33 658-695 16-48 (203)
306 1tev_A UMP-CMP kinase; ploop, 93.0 0.063 2.2E-06 52.5 4.0 25 227-251 3-27 (196)
307 1tev_A UMP-CMP kinase; ploop, 93.0 0.054 1.9E-06 53.0 3.5 23 659-681 5-27 (196)
308 2iyv_A Shikimate kinase, SK; t 93.0 0.06 2.1E-06 52.6 3.8 23 659-681 4-26 (184)
309 1xp8_A RECA protein, recombina 92.9 0.28 9.5E-06 54.2 9.5 85 659-745 76-165 (366)
310 1kag_A SKI, shikimate kinase I 92.9 0.048 1.6E-06 52.6 3.0 23 659-681 6-28 (173)
311 2yhs_A FTSY, cell division pro 92.9 0.11 3.6E-06 59.7 6.2 39 656-694 292-330 (503)
312 1w36_D RECD, exodeoxyribonucle 92.9 0.2 6.8E-06 59.1 8.9 28 732-759 262-289 (608)
313 3umf_A Adenylate kinase; rossm 92.9 0.073 2.5E-06 54.5 4.4 26 226-251 28-53 (217)
314 2bwj_A Adenylate kinase 5; pho 92.9 0.05 1.7E-06 53.7 3.1 33 658-695 13-45 (199)
315 3a8t_A Adenylate isopentenyltr 92.8 0.045 1.6E-06 59.7 2.9 32 658-692 41-72 (339)
316 3sr0_A Adenylate kinase; phosp 92.8 0.071 2.4E-06 54.1 4.2 23 229-251 2-24 (206)
317 1y63_A LMAJ004144AAA protein; 92.8 0.065 2.2E-06 52.8 3.9 36 658-697 11-46 (184)
318 3a4m_A L-seryl-tRNA(SEC) kinas 92.8 0.063 2.2E-06 56.1 4.0 37 658-694 5-41 (260)
319 2bwj_A Adenylate kinase 5; pho 92.8 0.069 2.4E-06 52.6 4.1 25 227-251 12-36 (199)
320 1e6c_A Shikimate kinase; phosp 92.8 0.064 2.2E-06 51.7 3.7 23 659-681 4-26 (173)
321 1ly1_A Polynucleotide kinase; 92.8 0.047 1.6E-06 52.8 2.8 22 228-249 3-24 (181)
322 1via_A Shikimate kinase; struc 92.8 0.056 1.9E-06 52.5 3.3 23 659-681 6-28 (175)
323 2cdn_A Adenylate kinase; phosp 92.8 0.08 2.8E-06 52.6 4.5 23 659-681 22-44 (201)
324 1nks_A Adenylate kinase; therm 92.8 0.047 1.6E-06 53.3 2.7 24 229-252 3-26 (194)
325 2c95_A Adenylate kinase 1; tra 92.8 0.064 2.2E-06 52.7 3.7 24 658-681 10-33 (196)
326 2oap_1 GSPE-2, type II secreti 92.7 0.16 5.5E-06 58.6 7.6 92 659-760 262-358 (511)
327 3fb4_A Adenylate kinase; psych 92.7 0.067 2.3E-06 53.7 3.9 23 229-251 2-24 (216)
328 3sr0_A Adenylate kinase; phosp 92.7 0.062 2.1E-06 54.5 3.6 31 659-694 2-32 (206)
329 3tlx_A Adenylate kinase 2; str 92.7 0.12 4.1E-06 53.5 5.8 26 226-251 28-53 (243)
330 3umf_A Adenylate kinase; rossm 92.7 0.078 2.7E-06 54.3 4.3 32 658-694 30-61 (217)
331 2zr9_A Protein RECA, recombina 92.7 0.14 4.7E-06 56.3 6.5 84 659-745 63-152 (349)
332 2b8t_A Thymidine kinase; deoxy 92.7 0.071 2.4E-06 54.8 3.9 27 227-253 12-38 (223)
333 2px0_A Flagellar biosynthesis 92.6 0.37 1.3E-05 51.5 9.8 40 657-696 105-145 (296)
334 1ly1_A Polynucleotide kinase; 92.6 0.06 2.1E-06 52.0 3.2 34 659-696 4-37 (181)
335 2fz4_A DNA repair protein RAD2 92.6 0.18 6.2E-06 51.9 7.1 38 211-251 95-132 (237)
336 2qor_A Guanylate kinase; phosp 92.6 0.066 2.2E-06 53.6 3.6 26 226-251 11-36 (204)
337 2pt5_A Shikimate kinase, SK; a 92.6 0.075 2.6E-06 51.0 3.9 23 229-251 2-24 (168)
338 1knq_A Gluconate kinase; ALFA/ 92.5 0.095 3.2E-06 50.7 4.5 25 227-251 8-32 (175)
339 2px0_A Flagellar biosynthesis 92.5 0.49 1.7E-05 50.5 10.5 27 226-252 104-130 (296)
340 2dr3_A UPF0273 protein PH0284; 92.5 0.23 7.8E-06 50.5 7.6 28 226-253 22-49 (247)
341 1ak2_A Adenylate kinase isoenz 92.5 0.09 3.1E-06 53.8 4.5 26 226-251 15-40 (233)
342 1ukz_A Uridylate kinase; trans 92.5 0.079 2.7E-06 52.7 3.9 25 226-250 14-38 (203)
343 1zd8_A GTP:AMP phosphotransfer 92.4 0.079 2.7E-06 53.9 4.0 25 227-251 7-31 (227)
344 2xxa_A Signal recognition part 92.4 1.4 4.8E-05 49.6 14.6 28 226-253 99-126 (433)
345 3cm0_A Adenylate kinase; ATP-b 92.4 0.072 2.5E-06 52.0 3.5 23 659-681 6-28 (186)
346 3cm0_A Adenylate kinase; ATP-b 92.4 0.061 2.1E-06 52.6 3.0 25 227-251 4-28 (186)
347 1g5t_A COB(I)alamin adenosyltr 92.4 0.11 3.8E-06 52.3 4.9 35 657-691 28-62 (196)
348 3foz_A TRNA delta(2)-isopenten 92.4 0.079 2.7E-06 57.1 4.0 32 658-692 11-42 (316)
349 2z43_A DNA repair and recombin 92.4 0.26 9E-06 53.2 8.3 96 213-310 94-215 (324)
350 1zak_A Adenylate kinase; ATP:A 92.3 0.075 2.6E-06 53.8 3.6 26 226-251 4-29 (222)
351 2qor_A Guanylate kinase; phosp 92.3 0.066 2.3E-06 53.6 3.2 24 658-681 13-36 (204)
352 2pt5_A Shikimate kinase, SK; a 92.3 0.09 3.1E-06 50.4 4.0 23 659-681 2-24 (168)
353 1zj6_A ADP-ribosylation factor 92.3 0.082 2.8E-06 51.5 3.8 34 215-249 5-38 (187)
354 2ehv_A Hypothetical protein PH 92.3 0.21 7.3E-06 50.8 7.0 75 225-307 28-144 (251)
355 1xp8_A RECA protein, recombina 92.2 0.17 5.9E-06 55.8 6.7 91 213-310 60-164 (366)
356 1u94_A RECA protein, recombina 92.2 0.28 9.5E-06 54.0 8.3 42 212-253 48-89 (356)
357 1u94_A RECA protein, recombina 92.2 0.25 8.7E-06 54.3 7.9 86 659-746 65-155 (356)
358 3be4_A Adenylate kinase; malar 92.2 0.094 3.2E-06 53.1 4.1 25 227-251 5-29 (217)
359 3tau_A Guanylate kinase, GMP k 92.2 0.066 2.2E-06 53.9 2.9 24 658-681 9-32 (208)
360 1zp6_A Hypothetical protein AT 92.1 0.059 2E-06 52.9 2.5 25 226-250 8-32 (191)
361 1vma_A Cell division protein F 92.1 0.23 7.8E-06 53.5 7.3 27 227-253 104-130 (306)
362 2jaq_A Deoxyguanosine kinase; 92.1 0.082 2.8E-06 52.2 3.5 23 659-681 2-24 (205)
363 3tqc_A Pantothenate kinase; bi 92.1 0.2 6.9E-06 54.3 6.9 62 621-696 70-133 (321)
364 2vli_A Antibiotic resistance p 92.1 0.057 1.9E-06 52.6 2.3 24 658-681 6-29 (183)
365 2plr_A DTMP kinase, probable t 92.1 0.091 3.1E-06 52.2 3.9 23 659-681 6-28 (213)
366 1w36_D RECD, exodeoxyribonucle 92.1 0.68 2.3E-05 54.5 12.0 28 226-253 163-190 (608)
367 3crm_A TRNA delta(2)-isopenten 92.0 0.086 2.9E-06 57.2 3.8 31 659-692 7-37 (323)
368 1nn5_A Similar to deoxythymidy 92.0 0.089 3E-06 52.5 3.7 24 658-681 10-33 (215)
369 1vma_A Cell division protein F 92.0 0.48 1.6E-05 50.9 9.7 42 655-696 102-143 (306)
370 3tlx_A Adenylate kinase 2; str 92.0 0.11 3.6E-06 53.8 4.4 32 658-694 30-61 (243)
371 2pbr_A DTMP kinase, thymidylat 92.0 0.11 3.7E-06 50.8 4.2 34 659-692 2-35 (195)
372 2wwf_A Thymidilate kinase, put 92.0 0.1 3.4E-06 52.1 4.0 24 658-681 11-34 (212)
373 1m7g_A Adenylylsulfate kinase; 91.9 0.11 3.7E-06 52.2 4.3 37 658-694 26-63 (211)
374 1kgd_A CASK, peripheral plasma 91.9 0.077 2.6E-06 52.1 3.0 23 659-681 7-29 (180)
375 3hr8_A Protein RECA; alpha and 91.9 0.27 9.2E-06 54.1 7.6 43 211-253 45-87 (356)
376 3lxx_A GTPase IMAP family memb 91.9 0.12 4.1E-06 52.9 4.6 25 226-250 28-52 (239)
377 1nn5_A Similar to deoxythymidy 91.8 0.084 2.9E-06 52.7 3.3 28 226-253 8-35 (215)
378 1odf_A YGR205W, hypothetical 3 91.8 0.22 7.4E-06 53.2 6.6 26 657-682 31-56 (290)
379 1zak_A Adenylate kinase; ATP:A 91.8 0.083 2.8E-06 53.5 3.2 23 659-681 7-29 (222)
380 2jaq_A Deoxyguanosine kinase; 91.7 0.084 2.9E-06 52.1 3.2 23 229-251 2-24 (205)
381 2pbr_A DTMP kinase, thymidylat 91.7 0.12 4.2E-06 50.4 4.4 34 229-269 2-35 (195)
382 2iut_A DNA translocase FTSK; n 91.7 0.89 3E-05 52.9 12.1 42 227-271 214-255 (574)
383 2plr_A DTMP kinase, probable t 91.7 0.088 3E-06 52.3 3.2 26 227-252 4-29 (213)
384 2wsm_A Hydrogenase expression/ 91.6 0.13 4.3E-06 51.7 4.3 38 214-251 17-54 (221)
385 3cmw_A Protein RECA, recombina 91.6 0.29 1E-05 63.8 8.6 78 225-310 32-124 (1706)
386 2ga8_A Hypothetical 39.9 kDa p 91.6 0.22 7.5E-06 54.7 6.4 24 658-681 25-48 (359)
387 3tr0_A Guanylate kinase, GMP k 91.6 0.098 3.3E-06 51.8 3.4 24 658-681 8-31 (205)
388 3fb4_A Adenylate kinase; psych 91.5 0.098 3.4E-06 52.5 3.4 23 659-681 2-24 (216)
389 1g5t_A COB(I)alamin adenosyltr 91.5 0.33 1.1E-05 48.8 7.2 29 225-253 26-54 (196)
390 1ak2_A Adenylate kinase isoenz 91.5 0.11 3.9E-06 53.0 3.9 24 658-681 17-40 (233)
391 1svi_A GTP-binding protein YSX 91.5 0.19 6.5E-06 49.0 5.4 26 225-250 21-46 (195)
392 1qf9_A UMP/CMP kinase, protein 91.5 0.13 4.5E-06 50.1 4.1 24 658-681 7-30 (194)
393 2gza_A Type IV secretion syste 91.4 0.29 9.9E-06 53.8 7.3 93 658-760 176-277 (361)
394 2gxq_A Heat resistant RNA depe 91.4 1.3 4.6E-05 43.4 11.6 26 227-252 38-64 (207)
395 1lvg_A Guanylate kinase, GMP k 91.3 0.11 3.8E-06 51.9 3.6 26 226-251 3-28 (198)
396 1zd8_A GTP:AMP phosphotransfer 91.3 0.094 3.2E-06 53.3 3.0 24 658-681 8-31 (227)
397 2wwf_A Thymidilate kinase, put 91.3 0.11 3.6E-06 51.9 3.3 28 226-253 9-36 (212)
398 2qt1_A Nicotinamide riboside k 91.3 0.13 4.6E-06 51.2 4.1 38 656-697 20-57 (207)
399 1w4r_A Thymidine kinase; type 91.3 0.25 8.4E-06 49.7 5.9 89 659-759 22-117 (195)
400 3be4_A Adenylate kinase; malar 91.3 0.11 3.9E-06 52.4 3.6 24 658-681 6-29 (217)
401 1r8s_A ADP-ribosylation factor 91.2 0.19 6.5E-06 47.3 4.9 74 229-305 2-76 (164)
402 2r8r_A Sensor protein; KDPD, P 91.1 0.15 5.3E-06 52.4 4.4 30 224-253 3-32 (228)
403 3dl0_A Adenylate kinase; phosp 91.1 0.098 3.3E-06 52.6 2.9 22 660-681 3-24 (216)
404 3l0o_A Transcription terminati 91.1 0.49 1.7E-05 52.5 8.6 38 216-253 163-201 (427)
405 2ga8_A Hypothetical 39.9 kDa p 91.1 0.15 5.2E-06 56.0 4.5 28 225-252 22-49 (359)
406 2fh5_B SR-beta, signal recogni 91.1 0.16 5.4E-06 50.6 4.4 26 226-251 6-31 (214)
407 2v54_A DTMP kinase, thymidylat 91.1 0.11 3.7E-06 51.5 3.1 26 226-251 3-28 (204)
408 1x6v_B Bifunctional 3'-phospho 91.1 0.25 8.7E-06 58.2 6.7 38 226-270 51-88 (630)
409 2z0h_A DTMP kinase, thymidylat 91.0 0.12 4.1E-06 50.8 3.4 24 659-682 2-25 (197)
410 2j41_A Guanylate kinase; GMP, 91.0 0.099 3.4E-06 51.8 2.8 25 658-682 7-31 (207)
411 2bdt_A BH3686; alpha-beta prot 91.0 0.12 4E-06 50.8 3.3 34 659-696 4-37 (189)
412 3d3q_A TRNA delta(2)-isopenten 90.9 0.16 5.6E-06 55.4 4.6 33 659-696 9-41 (340)
413 2ged_A SR-beta, signal recogni 90.9 0.13 4.6E-06 50.1 3.6 25 226-250 47-71 (193)
414 1lvg_A Guanylate kinase, GMP k 90.9 0.12 4.2E-06 51.6 3.3 23 659-681 6-28 (198)
415 2vli_A Antibiotic resistance p 90.8 0.075 2.6E-06 51.7 1.6 25 227-251 5-29 (183)
416 3eph_A TRNA isopentenyltransfe 90.8 0.14 4.9E-06 57.1 4.1 31 659-692 4-34 (409)
417 2bbw_A Adenylate kinase 4, AK4 90.8 0.14 4.8E-06 52.8 3.8 24 658-681 28-51 (246)
418 3exa_A TRNA delta(2)-isopenten 90.7 0.11 3.9E-06 56.0 3.1 31 659-692 5-35 (322)
419 2xb4_A Adenylate kinase; ATP-b 90.7 0.13 4.3E-06 52.4 3.3 23 659-681 2-24 (223)
420 1e4v_A Adenylate kinase; trans 90.7 0.13 4.5E-06 51.7 3.4 23 659-681 2-24 (214)
421 1ye8_A Protein THEP1, hypothet 90.7 0.13 4.5E-06 50.7 3.3 23 229-251 2-24 (178)
422 3nwj_A ATSK2; P loop, shikimat 90.7 0.14 4.8E-06 53.5 3.7 25 227-251 48-72 (250)
423 1e4v_A Adenylate kinase; trans 90.7 0.11 3.9E-06 52.2 2.9 23 229-251 2-24 (214)
424 1moz_A ARL1, ADP-ribosylation 90.6 0.088 3E-06 50.8 2.0 33 216-248 6-39 (183)
425 3dm5_A SRP54, signal recogniti 90.6 0.49 1.7E-05 53.5 8.3 27 227-253 100-126 (443)
426 2z0h_A DTMP kinase, thymidylat 90.6 0.15 5.3E-06 50.0 3.8 24 230-253 3-26 (197)
427 1rz3_A Hypothetical protein rb 90.5 0.22 7.7E-06 49.6 4.9 42 211-252 3-47 (201)
428 2hf9_A Probable hydrogenase ni 90.5 0.18 6.3E-06 50.6 4.3 28 224-251 35-62 (226)
429 2qmh_A HPR kinase/phosphorylas 90.5 0.1 3.4E-06 52.8 2.2 30 659-692 36-65 (205)
430 2ffh_A Protein (FFH); SRP54, s 90.4 0.71 2.4E-05 51.9 9.4 42 656-697 97-138 (425)
431 1cke_A CK, MSSA, protein (cyti 90.4 0.15 5.2E-06 51.4 3.6 23 659-681 7-29 (227)
432 3a00_A Guanylate kinase, GMP k 90.4 0.12 4.2E-06 50.8 2.8 23 659-681 3-25 (186)
433 2bbw_A Adenylate kinase 4, AK4 90.3 0.15 5.1E-06 52.6 3.5 25 227-251 27-51 (246)
434 4b3f_X DNA-binding protein smu 90.3 0.36 1.2E-05 57.3 7.2 69 659-750 207-275 (646)
435 2ck3_D ATP synthase subunit be 90.3 0.81 2.8E-05 52.0 9.7 38 217-254 142-180 (482)
436 3p32_A Probable GTPase RV1496/ 90.3 0.5 1.7E-05 51.7 7.9 38 657-694 79-116 (355)
437 2v54_A DTMP kinase, thymidylat 90.3 0.13 4.5E-06 50.8 2.9 23 659-681 6-28 (204)
438 2r6a_A DNAB helicase, replicat 90.3 0.58 2E-05 53.0 8.6 55 211-271 189-243 (454)
439 2z43_A DNA repair and recombin 90.2 0.27 9.3E-06 53.1 5.6 38 658-695 108-151 (324)
440 1rj9_A FTSY, signal recognitio 90.2 0.31 1E-05 52.4 5.9 35 657-691 102-136 (304)
441 1cke_A CK, MSSA, protein (cyti 90.2 0.16 5.6E-06 51.1 3.6 25 227-251 5-29 (227)
442 3asz_A Uridine kinase; cytidin 90.2 0.17 5.9E-06 50.5 3.7 25 657-681 6-30 (211)
443 3lda_A DNA repair protein RAD5 90.2 0.43 1.5E-05 53.3 7.3 38 658-695 179-222 (400)
444 3def_A T7I23.11 protein; chlor 90.1 0.23 8E-06 51.7 4.8 38 213-250 20-59 (262)
445 2if2_A Dephospho-COA kinase; a 90.1 0.16 5.6E-06 50.3 3.5 31 228-269 2-32 (204)
446 1v5w_A DMC1, meiotic recombina 90.1 0.58 2E-05 51.0 8.1 39 213-252 109-147 (343)
447 2v3c_C SRP54, signal recogniti 90.0 0.25 8.7E-06 55.7 5.3 42 656-697 98-139 (432)
448 3c8u_A Fructokinase; YP_612366 90.0 0.2 6.8E-06 50.2 4.1 39 214-252 7-47 (208)
449 3pqc_A Probable GTP-binding pr 90.0 0.36 1.2E-05 46.7 5.8 25 226-250 22-46 (195)
450 1htw_A HI0065; nucleotide-bind 89.9 0.23 7.9E-06 48.0 4.3 27 658-685 34-60 (158)
451 2bdt_A BH3686; alpha-beta prot 89.9 0.15 5.1E-06 50.0 3.0 21 229-249 4-24 (189)
452 3sfz_A APAF-1, apoptotic pepti 89.9 0.75 2.6E-05 58.0 10.1 47 618-680 124-170 (1249)
453 3a00_A Guanylate kinase, GMP k 89.8 0.14 4.9E-06 50.3 2.7 23 229-251 3-25 (186)
454 1ltq_A Polynucleotide kinase; 89.8 0.17 5.9E-06 53.6 3.5 23 228-250 3-25 (301)
455 1m2o_B GTP-binding protein SAR 89.8 0.14 4.9E-06 50.2 2.7 24 226-249 22-45 (190)
456 2dyk_A GTP-binding protein; GT 89.7 0.15 5.2E-06 47.8 2.7 23 228-250 2-24 (161)
457 2xb4_A Adenylate kinase; ATP-b 89.7 0.17 5.7E-06 51.5 3.2 23 229-251 2-24 (223)
458 3ney_A 55 kDa erythrocyte memb 89.7 0.19 6.4E-06 50.6 3.5 24 658-681 20-43 (197)
459 3tr0_A Guanylate kinase, GMP k 89.6 0.17 5.9E-06 50.0 3.2 25 227-251 7-31 (205)
460 3io5_A Recombination and repai 89.6 0.3 1E-05 52.8 5.2 85 658-745 29-124 (333)
461 2q6t_A DNAB replication FORK h 89.6 0.71 2.4E-05 52.1 8.6 53 211-270 186-239 (444)
462 1uj2_A Uridine-cytidine kinase 89.6 0.25 8.5E-06 51.2 4.5 39 658-697 23-67 (252)
463 1sq5_A Pantothenate kinase; P- 89.5 0.34 1.2E-05 52.0 5.6 40 658-697 81-122 (308)
464 2xtp_A GTPase IMAP family memb 89.5 0.42 1.4E-05 49.4 6.2 24 226-249 21-44 (260)
465 1gtv_A TMK, thymidylate kinase 89.5 0.12 4.2E-06 51.5 2.0 23 659-681 2-24 (214)
466 2pez_A Bifunctional 3'-phospho 89.5 0.22 7.4E-06 48.5 3.7 37 226-269 4-40 (179)
467 2j41_A Guanylate kinase; GMP, 89.4 0.18 6.2E-06 49.8 3.2 26 226-251 5-30 (207)
468 2nzj_A GTP-binding protein REM 89.4 0.16 5.6E-06 48.3 2.7 23 227-249 4-26 (175)
469 3zvl_A Bifunctional polynucleo 89.3 0.3 1E-05 54.7 5.3 26 226-251 257-282 (416)
470 4gp7_A Metallophosphoesterase; 89.3 0.24 8.2E-06 48.1 3.9 27 658-684 10-48 (171)
471 2gks_A Bifunctional SAT/APS ki 89.2 1.1 3.8E-05 52.1 10.0 52 202-253 342-398 (546)
472 2lkc_A Translation initiation 89.2 0.2 6.8E-06 47.8 3.2 25 225-249 6-30 (178)
473 3fe2_A Probable ATP-dependent 89.2 3.4 0.00012 42.0 12.7 27 227-253 66-93 (242)
474 2j37_W Signal recognition part 89.1 0.68 2.3E-05 53.3 8.0 27 227-253 101-127 (504)
475 3b6e_A Interferon-induced heli 89.1 0.32 1.1E-05 48.1 4.7 25 227-251 48-72 (216)
476 3pey_A ATP-dependent RNA helic 89.1 1.9 6.6E-05 46.5 11.4 31 218-248 35-65 (395)
477 1nrj_B SR-beta, signal recogni 89.0 0.2 7E-06 49.9 3.2 25 226-250 11-35 (218)
478 1f6b_A SAR1; gtpases, N-termin 89.0 0.15 5.3E-06 50.4 2.2 34 215-248 12-46 (198)
479 1nrj_B SR-beta, signal recogni 88.9 0.8 2.7E-05 45.5 7.6 28 656-683 11-38 (218)
480 1znw_A Guanylate kinase, GMP k 88.9 0.22 7.5E-06 49.9 3.3 24 658-681 21-44 (207)
481 2wji_A Ferrous iron transport 88.9 0.17 5.9E-06 48.3 2.4 22 228-249 4-25 (165)
482 3iby_A Ferrous iron transport 88.8 0.29 9.8E-06 51.1 4.3 23 228-250 2-24 (256)
483 3kl4_A SRP54, signal recogniti 88.8 0.48 1.6E-05 53.4 6.4 27 227-253 97-123 (433)
484 1kao_A RAP2A; GTP-binding prot 88.8 0.2 6.9E-06 46.9 2.9 24 227-250 3-26 (167)
485 2r8r_A Sensor protein; KDPD, P 88.8 0.39 1.3E-05 49.4 5.2 38 657-694 6-43 (228)
486 3zvl_A Bifunctional polynucleo 88.7 0.43 1.5E-05 53.5 5.9 32 658-694 259-290 (416)
487 2v9p_A Replication protein E1; 88.7 0.2 6.9E-06 53.9 3.1 31 225-256 124-154 (305)
488 1uf9_A TT1252 protein; P-loop, 88.7 0.25 8.5E-06 48.7 3.5 23 658-680 9-31 (203)
489 3kta_A Chromosome segregation 88.6 0.26 8.8E-06 47.9 3.6 28 658-685 27-54 (182)
490 1z6g_A Guanylate kinase; struc 88.6 0.21 7.3E-06 50.6 3.1 24 658-681 24-47 (218)
491 2wjg_A FEOB, ferrous iron tran 88.6 0.18 6.3E-06 48.8 2.4 23 227-249 7-29 (188)
492 1z2a_A RAS-related protein RAB 88.5 0.21 7.2E-06 47.0 2.8 24 227-250 5-28 (168)
493 2grj_A Dephospho-COA kinase; T 88.5 0.24 8.2E-06 49.5 3.3 34 658-696 13-46 (192)
494 2dr3_A UPF0273 protein PH0284; 88.5 0.36 1.2E-05 49.0 4.7 37 658-694 24-60 (247)
495 2zej_A Dardarin, leucine-rich 88.5 0.17 5.8E-06 49.3 2.2 21 229-249 4-24 (184)
496 1qde_A EIF4A, translation init 88.4 3.3 0.00011 41.2 11.8 25 227-251 51-76 (224)
497 1jjv_A Dephospho-COA kinase; P 88.4 0.22 7.4E-06 49.6 2.9 21 659-679 4-24 (206)
498 2atv_A RERG, RAS-like estrogen 88.4 0.22 7.5E-06 48.8 2.9 29 222-250 23-51 (196)
499 1bif_A 6-phosphofructo-2-kinas 88.4 0.95 3.3E-05 51.4 8.6 96 658-757 40-146 (469)
500 1u8z_A RAS-related protein RAL 88.3 0.22 7.6E-06 46.7 2.8 24 227-250 4-27 (168)
No 1
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=100.00 E-value=8.1e-71 Score=679.67 Aligned_cols=646 Identities=20% Similarity=0.269 Sum_probs=448.2
Q ss_pred chHHhhhHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCcHHHHHHHHcCCChhhHHHHHHHHHHHhccCCCCCCC
Q 003038 7 TIQQGLTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALELCFNVALNRLPASTST 86 (854)
Q Consensus 7 ~~~~~fT~~a~~aL~~A~~~A~~~gh~~Vt~eHLLlaLL~~~~s~l~~iL~~~gvd~~~~~aL~~~l~~~L~rlp~~~~~ 86 (854)
|++++||+.++++|+.|+++|+++||.+|+|||||++||.++++.+.++|.++|+++ +.|+..++..+.++|...++
T Consensus 1 ~~~~~~t~~a~~al~~A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~~~iL~~~gvd~---~~l~~~l~~~l~~~p~~~~~ 77 (854)
T 1qvr_A 1 MNLERWTQAAREALAQAQVLAQRMKHQAIDLPHLWAVLLKDERSLAWRLLEKAGADP---KALKELQERELARLPKVEGA 77 (854)
T ss_dssp ---CCSCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHCCSSSSHHHHHHHTTSSCH---HHHHHHHHHHHHTSCCCCGG
T ss_pred CChhhhCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCcHHHHHHHHcCCCH---HHHHHHHHHHHhhCCCCCCC
Confidence 467899999999999999999999999999999999999999999999999999986 89999999999998875421
Q ss_pred CCCCCCccChhHHHHHHHHHHHHHHHhhhCCcccccccccccccCHHHHHHHhccCChHHHHHHHhCCCHHHHHHHHHHH
Q 003038 87 PMLGGHCQFPTISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIELEQLIISILDDPSVSRVMREAGFSSTQVKSNVEQA 166 (854)
Q Consensus 87 ~~~~~~~~~p~~s~~L~~al~~A~~~~~~~~~~~~~~~~~~~~I~~eHLLLALL~d~~~~~iL~~~Gi~~~~l~~~v~~~ 166 (854)
+ +.++++|.+.++|+.|...|..+ +.+ +|+++|||+||++++... ++...++..+.+
T Consensus 78 ~--~~~~~S~~~~~vL~~A~~~a~~~----g~~---------~I~~ehlLlall~~~~~~-------~~~~~~~~~~~~- 134 (854)
T 1qvr_A 78 E--VGQYLTSRLSGALNRAEGLMEEL----KDR---------YVAVDTLVLALAEATPGL-------PGLEALKGALKE- 134 (854)
T ss_dssp G--TTCEECHHHHHHHHHHHHHHHTT----TCS---------SCCHHHHHHHHHHHSTTS-------CCHHHHHHHHTS-
T ss_pred C--CCCCCCHHHHHHHHHHHHHHHHc----CCc---------EeeHHHHHHHHHhccccc-------CCHHHHHHHHHH-
Confidence 1 12334555555444444444432 223 599999999999875321 788888777653
Q ss_pred hhhhhccCCCCCCCCCcccccccccccccccccccCCCCCCCCC--cHHHHHHHHHHhhccCcCCceeecCCCCCHHHHH
Q 003038 167 VSLEICSQSTPVSSNKSKESNVLVLSQTASATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVV 244 (854)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ldpv--r~~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v 244 (854)
+++ ........ .....+.+.+|+.+++..++.|++||+ |++++++++++|.+++++|++|+||||||||++|
T Consensus 135 ~~~----~~~~~~~~--~~~~~~~l~~~~~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 135 LRG----GRTVQTEH--AESTYNALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp SCS----CCSSCSSC--CCCCCSHHHHHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHH
T ss_pred hcc----cccccccc--ccccchhHHHHHHhHHHHHhcCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHH
Confidence 221 11111111 111245688999999988889999997 9999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCcccCCceEEEccccccccc--chHHHHHHHHHHHHHHHhhhCCCeEEEeCccccc-ccccccccccc
Q 003038 245 RGVIDKIEKGDVPEALRDVKCLPLSISSFRHM--NRVEVEQRVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVR 321 (854)
Q Consensus 245 ~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~--~rge~E~rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~ 321 (854)
+++|.++..+++|..|++.+++.++++.+.++ ++|+++++++.+++.+... ++++||||||+|++ +.+...
T Consensus 209 ~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~-~~~~iL~IDEi~~l~~~~~~~----- 282 (854)
T 1qvr_A 209 EGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQS-QGEVILFIDELHTVVGAGKAE----- 282 (854)
T ss_dssp HHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTT-CSSEEEEECCC---------------
T ss_pred HHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhc-CCCeEEEEecHHHHhccCCcc-----
Confidence 99999999999999999999999999999865 9999999999999999875 56899999999999 776532
Q ss_pred ccchhhhHHHHHHHhhccc--CCCCceEEEEEecCHHHHHHhhccCCchhhhhccCCCCCCCchHHHHhh----------
Q 003038 322 GYYCSIEHIIMEIGKLVCG--IGENARFWLMGIATFQSYMRCKSGHPSLETLWSLHPLTIPAGSLSLSLI---------- 389 (854)
Q Consensus 322 ~~~~~~~~~~~~~~~ll~~--~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~~~v~i~~~sl~~al~---------- 389 (854)
+.+++.++|++ .++ .+++||+||..+|++ +..+|+|.+ ||+.|.|++++......
T Consensus 283 --------g~~~~~~~L~~~l~~~--~i~~I~at~~~~~~~-~~~d~aL~r--Rf~~i~l~~p~~~e~~~iL~~~~~~~~ 349 (854)
T 1qvr_A 283 --------GAVDAGNMLKPALARG--ELRLIGATTLDEYRE-IEKDPALER--RFQPVYVDEPTVEETISILRGLKEKYE 349 (854)
T ss_dssp -----------------HHHHHTT--CCCEEEEECHHHHHH-HTTCTTTCS--CCCCEEECCCCHHHHHHHHHHHHHHHH
T ss_pred --------chHHHHHHHHHHHhCC--CeEEEEecCchHHhh-hccCHHHHh--CCceEEeCCCCHHHHHHHHHhhhhhhh
Confidence 34567777765 344 699999999999999 899999999 99999999987543221
Q ss_pred ------cccch------hhhccccCCcCCCcccccccchhhhhhhcccccchhhhHHHHhhhhcccCCCCCCCCCChHHH
Q 003038 390 ------TTDSD------LQSQSTSKKAESGVSWLLFEGEEENKQLTCCADCSAKFEAEARSLQSSSCNSDSPTSSLPAWL 457 (854)
Q Consensus 390 ------~~~s~------~~~~~~~~~~~pdkaidlld~a~~~~~~~c~~~~~~~~e~e~~~~~~~~~~~~~~~~~lp~~l 457 (854)
+.+.. +..+|++++++|||+++++|+|++.+.+. ..+.|.+|
T Consensus 350 ~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~~~~~--------------------------~~~~p~~l 403 (854)
T 1qvr_A 350 VHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMA--------------------------LESAPEEI 403 (854)
T ss_dssp HHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHHT--------------------------TTTHHHHH
T ss_pred hhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHHHHhh--------------------------ccCCchhH
Confidence 12221 33478999999999999999998774321 11345555
Q ss_pred HhhHHHHh-------hcccCCCccc-----------ch-----hhHHHHHHHHhhhcccCcccccc--ccccccCCCCCC
Q 003038 458 QQYKNEKK-------ATLSNNDKDS-----------GV-----RDLCKKWNSICNSIHKQPYYSER--TLTFSSASPSSS 512 (854)
Q Consensus 458 ~~~~~~~~-------~~~~~~d~~~-----------~~-----~~L~~~w~~~~~~~~~~~~~~~~--~~~~~s~~~~s~ 512 (854)
+.++.... .+....+..+ .. ..+..+|+..+..++.....++. .+++.
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 476 (854)
T 1qvr_A 404 DALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRRE------- 476 (854)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------
Confidence 54442221 1110000000 00 16788898887655431111100 00000
Q ss_pred CCcccccccCcchhhhhhhhhccccccchhccccccccccccCCCCCcccccccccccccccccccCCCCCCCCCCcccc
Q 003038 513 TSGFSYDQQYPNFHKTHRDWAVVEPKQSWREHHFLFSHEASDKSTSEPSLRLYIPEHKDLKQPLSSNRNSTPNSTSSSDI 592 (854)
Q Consensus 513 ~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~ 592 (854)
.. ..+. ..++.....- . ....|...+ ++...+... ...+++. ..++.+++
T Consensus 477 ~~--~~~~-~~~~~~~~~~-~--~~~~~~~~~-~~~~~~~~~-----------------~~~~~~~------~~v~~~~l 526 (854)
T 1qvr_A 477 IE--LAER-QYDLNRAAEL-R--YGELPKLEA-EVEALSEKL-----------------RGARFVR------LEVTEEDI 526 (854)
T ss_dssp HH--HHTT-TTCHHHHHHH-H--TTHHHHHHH-HHHHHHHHS-----------------SSCSSCC------SEECHHHH
T ss_pred HH--HHHh-cccHHHHHHH-h--hhhhHHHHH-HHHHHHhhh-----------------ccccccc------CCcCHHHH
Confidence 00 0000 1111111100 0 001111111 110000000 0000111 22344445
Q ss_pred ccc--hhh----hhhhhhhHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCC
Q 003038 593 MEM--EYV----HKFKELNSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVD 666 (854)
Q Consensus 593 ~~v--~~~----~~~~~~~~e~l~~L~~~L~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~ 666 (854)
..+ +|+ .++.+.+.+++..|++.|.++|+||++++..|..+|.+.++|+.+++ +|.+++||+||+
T Consensus 527 ~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~~~g~~~~~---------~p~~~vLl~Gp~ 597 (854)
T 1qvr_A 527 AEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPN---------RPIGSFLFLGPT 597 (854)
T ss_dssp HHHHHTTSSCHHHHTTCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHHGGGCSCSS---------SCSEEEEEBSCS
T ss_pred HHHHHHHhCCChHhhcHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHhcccCCCC---------CCceEEEEECCC
Confidence 444 554 34556677888899999999999999999999999999999998864 788899999999
Q ss_pred CchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccC-CCCCC-chHH--HHHHHHHcCCCEEEEEecCC
Q 003038 667 ADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSR-DEQSC-SYIE--RFAEAVSNNPHRVFLIEDVE 742 (854)
Q Consensus 667 GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~-~~~g~-g~~e--~L~eav~~~p~~ViliDEie 742 (854)
|||||++|++||+.+|++..+|+++||++|. +.+..++++ .+++| ||.+ .|+++++.+|++|||||||+
T Consensus 598 GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~-------~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~ 670 (854)
T 1qvr_A 598 GVGKTELAKTLAATLFDTEEAMIRIDMTEYM-------EKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIE 670 (854)
T ss_dssp SSSHHHHHHHHHHHHHSSGGGEEEECTTTCC-------SSGGGGGC--------------CHHHHHHHCSSEEEEESSGG
T ss_pred CCCHHHHHHHHHHHhcCCCCcEEEEechhcc-------chhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEeccc
Confidence 9999999999999999999999999999998 667777777 46677 8875 79999999999999999999
Q ss_pred CCCHHHHHHHHHhhhcCeEecCCCceeecCCeEEEEecCC
Q 003038 743 QADYCSQKGFKRAIESGRIVTSSGDEVSLGDAIVILSCES 782 (854)
Q Consensus 743 ka~~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn~ 782 (854)
++++++|+.|+++|++|+++|+.|+.++|+|+|||||||.
T Consensus 671 ~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~ 710 (854)
T 1qvr_A 671 KAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNL 710 (854)
T ss_dssp GSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCT
T ss_pred ccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCc
Confidence 9999999999999999999999999999999999999995
No 2
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=100.00 E-value=6.1e-70 Score=664.38 Aligned_cols=596 Identities=20% Similarity=0.304 Sum_probs=426.9
Q ss_pred chHHhhhHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCcHHHHHHHHcCCChhhHHHHHHHHHHHhccCCCCCCC
Q 003038 7 TIQQGLTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALELCFNVALNRLPASTST 86 (854)
Q Consensus 7 ~~~~~fT~~a~~aL~~A~~~A~~~gh~~Vt~eHLLlaLL~~~~s~l~~iL~~~gvd~~~~~aL~~~l~~~L~rlp~~~~~ 86 (854)
||+++||+.++++|..|+++|+++||++|+|||||++||.++++.+.++|.++|+|+ +.|+..++..+.+.|...+
T Consensus 1 mm~~~~t~~a~~~l~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~~~gvd~---~~l~~~l~~~l~~~~~~~~- 76 (758)
T 3pxi_A 1 MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGS---EKIQKEVESLIGRGQEMSQ- 76 (758)
T ss_dssp --CCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHHHHTCCH---HHHHHHHHTTSCCCCTTCS-
T ss_pred CchhhhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHHHcCCCH---HHHHHHHHHHhccCCCCCC-
Confidence 478999999999999999999999999999999999999999999999999999986 8999999988887765421
Q ss_pred CCCCCCccChhHHHHHHHHHHHHHHHhhhCCcccccccccccccCHHHHHHHhccCC--hHHHHHHHhCCCHHHHHHHHH
Q 003038 87 PMLGGHCQFPTISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIELEQLIISILDDP--SVSRVMREAGFSSTQVKSNVE 164 (854)
Q Consensus 87 ~~~~~~~~~p~~s~~L~~al~~A~~~~~~~~~~~~~~~~~~~~I~~eHLLLALL~d~--~~~~iL~~~Gi~~~~l~~~v~ 164 (854)
.+++++.+.++|+.|..+|..++ .+ +|+++|||+||++++ .+.++|+++|++.+.++..+.
T Consensus 77 ----~~~~s~~~~~vl~~A~~~A~~~~----~~---------~I~~ehlLlall~~~~~~a~~~L~~~gv~~~~l~~~i~ 139 (758)
T 3pxi_A 77 ----TIHYTPRAKKVIELSMDEARKLG----HS---------YVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVL 139 (758)
T ss_dssp ----SCEECHHHHHHHHHHHHHHHTTT----CS---------SBCHHHHHHHHHHTCCSHHHHHHHHTTCCHHHHHHHHH
T ss_pred ----CCCCCHHHHHHHHHHHHHHHHcC----CC---------cccHHHHHHHHHhcCCcHHHHHHHHcCCCHHHHHHHHH
Confidence 34466777766666666665432 13 599999999999975 578999999999999998887
Q ss_pred HHhhhhhccCCCCCC-CCCcccccccccccccccccccCCCCCCCCC--cHHHHHHHHHHhhccCcCCceeecCCCCCHH
Q 003038 165 QAVSLEICSQSTPVS-SNKSKESNVLVLSQTASATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIE 241 (854)
Q Consensus 165 ~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~ldpv--r~~ei~~v~~~L~r~~k~n~vLvGe~GvGKt 241 (854)
+.+.. ...... .........+.+.+|+.+++..++.|++||+ |++++++++++|.|++++|++|+||||||||
T Consensus 140 ~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT 215 (758)
T 3pxi_A 140 QLLGS----NETGSSAAGTNSNANTPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKT 215 (758)
T ss_dssp TTCCC----CCTTC-----CCSTHHHHHHSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTH
T ss_pred HHhcC----CcccccccccccchhhhHHHHHHHHHHHHHhhCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHH
Confidence 53321 111000 0001111245688999999998889999998 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeCcccccccccccccccc
Q 003038 242 GVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLGDLEWAEFRASSSEQVR 321 (854)
Q Consensus 242 a~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfidel~~l~~~~~~~~~~~ 321 (854)
++|++||+++.++++|..+.+++++.+++ ...|+|+||.+++.+++++... +++||||| +
T Consensus 216 ~la~~la~~l~~~~~p~~l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~--~~~iLfiD-------~-------- 275 (758)
T 3pxi_A 216 AIAEGLAQQIINNEVPEILRDKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQA--GNIILFID-------A-------- 275 (758)
T ss_dssp HHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHTC--CCCEEEEC-------C--------
T ss_pred HHHHHHHHHHhcCCCChhhcCCeEEEecc---cccccchHHHHHHHHHHHHHhc--CCEEEEEc-------C--------
Confidence 99999999999999999999999999998 4449999999999999999975 68999999 1
Q ss_pred ccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchhhhhccCCCCCCCchHHHHhh------------
Q 003038 322 GYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLETLWSLHPLTIPAGSLSLSLI------------ 389 (854)
Q Consensus 322 ~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~~~v~i~~~sl~~al~------------ 389 (854)
.+++.++|.+...+|.+++||+||..+|+++++.+|+|.| ||+.|.|+.|+......
T Consensus 276 ---------~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~r--Rf~~i~v~~p~~~~~~~il~~~~~~~~~~ 344 (758)
T 3pxi_A 276 ---------AIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALER--RFQPIQVDQPSVDESIQILQGLRDRYEAH 344 (758)
T ss_dssp -----------------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHH--SEEEEECCCCCHHHHHHHHHHTTTTSGGG
T ss_pred ---------chhHHHHHHHHHhcCCEEEEeCCChHHHHHHhhccHHHHh--hCcEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence 1345566755333447999999999999999999999999 88999999887544221
Q ss_pred ----cccch------hhhccccCCcCCCcccccccchhhhhhhcccccchhhhHHHHhhhhcccCCCCCCCCCChHHHHh
Q 003038 390 ----TTDSD------LQSQSTSKKAESGVSWLLFEGEEENKQLTCCADCSAKFEAEARSLQSSSCNSDSPTSSLPAWLQQ 459 (854)
Q Consensus 390 ----~~~s~------~~~~~~~~~~~pdkaidlld~a~~~~~~~c~~~~~~~~e~e~~~~~~~~~~~~~~~~~lp~~l~~ 459 (854)
+.+.+ +..+|++++++||++++++|+|++.+.+.. ...+. ....+...+..
T Consensus 345 ~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~~~~~------------~~~p~-------~~~~l~~~~~~ 405 (758)
T 3pxi_A 345 HRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRS------------FTTPP-------NLKELEQKLDE 405 (758)
T ss_dssp SSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHT------------TC--C-------CTHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHHHHhhc------------cCCCc-------chhhHHHHHHH
Confidence 11111 234799999999999999999877633211 00000 00112233333
Q ss_pred hHHHHhhcccCCCcccchhhHHHHHHHHhhhcccCccccccccccccCCCCCCCCcccccccCcchhhhhhhhhcccccc
Q 003038 460 YKNEKKATLSNNDKDSGVRDLCKKWNSICNSIHKQPYYSERTLTFSSASPSSSTSGFSYDQQYPNFHKTHRDWAVVEPKQ 539 (854)
Q Consensus 460 ~~~~~~~~~~~~d~~~~~~~L~~~w~~~~~~~~~~~~~~~~~~~~~s~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 539 (854)
++.+........+.+... .|+.++..++..+ ......|.-..
T Consensus 406 ~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~l----------------------------------~~~~~~~~~~~--- 447 (758)
T 3pxi_A 406 VRKEKDAAVQSQEFEKAA-SLRDTEQRLREQV----------------------------------EDTKKSWKEKQ--- 447 (758)
T ss_dssp HHHHHHHHHHHCCSHHHH-HHHHHHHHHHHHH----------------------------------HHHHSGGGHHH---
T ss_pred HHHHHHHHHhCcCHHHHH-HHHHHHHHHHHHH----------------------------------HHHHHHHHHhh---
Confidence 332221110000100000 2222222221111 00000111000
Q ss_pred chhccccccccccccCCCCCcccccccccccccccccccCCCCCCCCCCccccccc--hhh----hhhhhhhHHHHHHHH
Q 003038 540 SWREHHFLFSHEASDKSTSEPSLRLYIPEHKDLKQPLSSNRNSTPNSTSSSDIMEM--EYV----HKFKELNSENLTSLC 613 (854)
Q Consensus 540 p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~v--~~~----~~~~~~~~e~l~~L~ 613 (854)
. .. ...++.+++..+ +|+ .++.+.+.+.+..|+
T Consensus 448 ----------------------------------~-~~------~~~v~~~~i~~~v~~~~~ip~~~~~~~~~~~l~~l~ 486 (758)
T 3pxi_A 448 ----------------------------------G-QE------NSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNME 486 (758)
T ss_dssp ----------------------------------H-CC---------CCTHHHHHHHHTTC-------CHHHHSCC-CHH
T ss_pred ----------------------------------c-cc------CcccCHHHHHHHHHHHhCCChHHhhHHHHHHHHHHH
Confidence 0 00 011222223332 332 345556667788899
Q ss_pred HhhcCcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcc
Q 003038 614 NALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIAL 693 (854)
Q Consensus 614 ~~L~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~ 693 (854)
+.|.++|+||++++..|..++.+.+.|+.++. +|.+++||+||+|||||++|++||+.+|+++.+|+++||
T Consensus 487 ~~l~~~viGq~~a~~~l~~~i~~~~~~~~~~~---------~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~ 557 (758)
T 3pxi_A 487 NILHSRVIGQDEAVVAVAKAVRRARAGLKDPK---------RPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDM 557 (758)
T ss_dssp HHHHTTSCSCHHHHHHHHHHHHHHTTTCSCTT---------SCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEG
T ss_pred HHHhCcCcChHHHHHHHHHHHHHHHcccCCCC---------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEec
Confidence 99999999999999999999999999998764 788899999999999999999999999999999999999
Q ss_pred ccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeecCC
Q 003038 694 SSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGD 773 (854)
Q Consensus 694 s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~~~ 773 (854)
++|. +.+..+ ...+++++++.|++||||||||++++++|+.|+++|++|++++..|+.+++.|
T Consensus 558 s~~~-------~~~~~~----------~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~ 620 (758)
T 3pxi_A 558 SEYM-------EKHSTS----------GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRN 620 (758)
T ss_dssp GGGC-------SSCCCC-------------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTT
T ss_pred hhcc-------cccccc----------cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCC
Confidence 9998 444322 12468899999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCC
Q 003038 774 AIVILSCES 782 (854)
Q Consensus 774 aIiIlTsn~ 782 (854)
++||+|||.
T Consensus 621 ~~iI~ttn~ 629 (758)
T 3pxi_A 621 TILIMTSNV 629 (758)
T ss_dssp CEEEEEESS
T ss_pred eEEEEeCCC
Confidence 999999994
No 3
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=100.00 E-value=2.1e-67 Score=642.24 Aligned_cols=569 Identities=16% Similarity=0.231 Sum_probs=437.4
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCcHHHHHHHHcCCChhhHHHHHHHHHHHhcc-CCCCCCCCCCC
Q 003038 12 LTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALELCFNVALNR-LPASTSTPMLG 90 (854)
Q Consensus 12 fT~~a~~aL~~A~~~A~~~gh~~Vt~eHLLlaLL~~~~s~l~~iL~~~gvd~~~~~aL~~~l~~~L~r-lp~~~~~~~~~ 90 (854)
||++++++|..|+++|+++||.+|+|||||++||.++ .+.++|.++|+++ +.|+..++..+.+ +|...++...+
T Consensus 2 ~t~~a~~~l~~A~~~A~~~~h~~i~~eHLLlaLl~~~--~~~~iL~~~gvd~---~~l~~~l~~~l~~~~p~~~~~~~~~ 76 (758)
T 1r6b_X 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNP--SAREALEACSVDL---VALRQELEAFIEQTTPVLPASEEER 76 (758)
T ss_dssp BCHHHHHHHHHHHHHHHHTTBSEECHHHHHHHHTTSH--HHHHHHHHTTCCH---HHHHHHHHHHHHHHSCBCCCSSSCC
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHcCc--HHHHHHHHcCCCH---HHHHHHHHHHHhccCCCCCCccccC
Confidence 9999999999999999999999999999999999864 5889999999986 8999999999987 77643210012
Q ss_pred CCccChhHHHHHHHHHHHHHHHhhhCCcccccccccccccCHHHHHHHhccCC--hHHHHHHHhCCCHHHHHHHHHHHhh
Q 003038 91 GHCQFPTISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIELEQLIISILDDP--SVSRVMREAGFSSTQVKSNVEQAVS 168 (854)
Q Consensus 91 ~~~~~p~~s~~L~~al~~A~~~~~~~~~~~~~~~~~~~~I~~eHLLLALL~d~--~~~~iL~~~Gi~~~~l~~~v~~~l~ 168 (854)
.++++|.+.++|+.|...|...++ + +|+++|||+||++++ .+.++|+++|++...+...+.+...
T Consensus 77 ~~~~s~~~~~vl~~A~~~a~~~~~----~---------~I~~ehlLlall~~~~~~a~~~L~~~gi~~~~l~~~i~~~~~ 143 (758)
T 1r6b_X 77 DTQPTLSFQRVLQRAVFHVQSSGR----N---------EVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTR 143 (758)
T ss_dssp CCEECHHHHHHHHHHHHHHHHHTC----S---------SBCHHHHHHHHTTCTTCHHHHHHHHTTCCHHHHHHHHHTC--
T ss_pred CCCcCHHHHHHHHHHHHHHHHcCC----C---------EeeHHHHHHHHhccccchHHHHHHHcCCCHHHHHHHHHHhhc
Confidence 345677777777777777766531 3 599999999999875 4789999999999998877654221
Q ss_pred hhh--ccCC-CCCCCCCcccccccccccccccccccCCCCCCCCC--cHHHHHHHHHHhhccCcCCceeecCCCCCHHHH
Q 003038 169 LEI--CSQS-TPVSSNKSKESNVLVLSQTASATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGV 243 (854)
Q Consensus 169 ~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ldpv--r~~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~ 243 (854)
... .+.. .............+.+.+|+.+++..++.|++||+ |++++++++++|.+++++|++|+||||||||++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~l 223 (758)
T 1r6b_X 144 KDEPTQSSDPGSQPNSEEQAGGEERLENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAI 223 (758)
T ss_dssp -------------------------CCSSSCBHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHH
T ss_pred cccccccccccccccccccccchhHHHHHhHhHHHHHhcCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHH
Confidence 100 0000 00000001111245688999999988889999998 999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCcccCCceEEEccccccccc--chHHHHHHHHHHHHHHHhhhCCCeEEEeCccccc-cccccccccc
Q 003038 244 VRGVIDKIEKGDVPEALRDVKCLPLSISSFRHM--NRVEVEQRVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQV 320 (854)
Q Consensus 244 v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~--~rge~E~rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~ 320 (854)
|++++.++..+.+|..+.+++++.++++.+.++ ++|+++++++.+++.+... +++||||||+|++ +.+...
T Consensus 224 a~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~--~~~iL~IDEi~~l~~~~~~~---- 297 (758)
T 1r6b_X 224 AEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQD--TNSILFIDEIHTIIGAGAAS---- 297 (758)
T ss_dssp HHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSS--SCEEEEETTTTTTTTSCCSS----
T ss_pred HHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhc--CCeEEEEechHHHhhcCCCC----
Confidence 999999999999999999999999999999865 9999999999999999875 5899999999999 776532
Q ss_pred cccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchhhhhccCCCCCCCchHHHHhh-----------
Q 003038 321 RGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLETLWSLHPLTIPAGSLSLSLI----------- 389 (854)
Q Consensus 321 ~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~~~v~i~~~sl~~al~----------- 389 (854)
.+.+++.++|++...++.+++||+||..+|.+++..||+|.+ ||+.|.|++|+......
T Consensus 298 --------~~~~~~~~~L~~~l~~~~~~~I~at~~~~~~~~~~~d~aL~~--Rf~~i~v~~p~~~e~~~il~~l~~~~~~ 367 (758)
T 1r6b_X 298 --------GGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALAR--RFQKIDITEPSIEETVQIINGLKPKYEA 367 (758)
T ss_dssp --------SCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCCCCCTTSSGG--GEEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_pred --------cchHHHHHHHHHHHhCCCeEEEEEeCchHHhhhhhcCHHHHh--CceEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 134678888876333347999999999999999999999999 88899999988654321
Q ss_pred -----cccch------hhhccccCCcCCCcccccccchhhhhhhcccccchhhhHHHHhhhhcccCCCCCCCCCChHHHH
Q 003038 390 -----TTDSD------LQSQSTSKKAESGVSWLLFEGEEENKQLTCCADCSAKFEAEARSLQSSSCNSDSPTSSLPAWLQ 458 (854)
Q Consensus 390 -----~~~s~------~~~~~~~~~~~pdkaidlld~a~~~~~~~c~~~~~~~~e~e~~~~~~~~~~~~~~~~~lp~~l~ 458 (854)
+.+.+ +..+|+.++++||++++++|+|++...+ . |.
T Consensus 368 ~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~---------------------~---------~~--- 414 (758)
T 1r6b_X 368 HHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARL---------------------M---------PV--- 414 (758)
T ss_dssp HHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHH---------------------S---------SS---
T ss_pred hcCCCCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhc---------------------c---------cc---
Confidence 11111 1235666666666666666655332100 0 00
Q ss_pred hhHHHHhhcccCCCcccchhhHHHHHHHHhhhcccCccccccccccccCCCCCCCCcccccccCcchhhhhhhhhccccc
Q 003038 459 QYKNEKKATLSNNDKDSGVRDLCKKWNSICNSIHKQPYYSERTLTFSSASPSSSTSGFSYDQQYPNFHKTHRDWAVVEPK 538 (854)
Q Consensus 459 ~~~~~~~~~~~~~d~~~~~~~L~~~w~~~~~~~~~~~~~~~~~~~~~s~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~ 538 (854)
.. .. ..+. ..++......|. .
T Consensus 415 --------------------------------------~~-~~---------~~v~-------~~di~~~~~~~~----~ 435 (758)
T 1r6b_X 415 --------------------------------------SK-RK---------KTVN-------VADIESVVARIA----R 435 (758)
T ss_dssp --------------------------------------CC-CC---------CSCC-------HHHHHHHHHHHS----C
T ss_pred --------------------------------------cc-cC---------CccC-------HHHHHHHHHHhc----C
Confidence 00 00 0000 011111111111 1
Q ss_pred cchhccccccccccccCCCCCcccccccccccccccccccCCCCCCCCCCccccccchhhhhhhhhhHHHHHHHHHhhcC
Q 003038 539 QSWREHHFLFSHEASDKSTSEPSLRLYIPEHKDLKQPLSSNRNSTPNSTSSSDIMEMEYVHKFKELNSENLTSLCNALEK 618 (854)
Q Consensus 539 ~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~e~l~~L~~~L~~ 618 (854)
+|+ .++...+.+.+..|++.|.+
T Consensus 436 ip~---------------------------------------------------------~~~~~~~~~~l~~l~~~l~~ 458 (758)
T 1r6b_X 436 IPE---------------------------------------------------------KSVSQSDRDTLKNLGDRLKM 458 (758)
T ss_dssp CCC---------------------------------------------------------CCSSSSHHHHHHHHHHHHTT
T ss_pred CCc---------------------------------------------------------cccchhHHHHHHHHHHHHHh
Confidence 111 11122355678899999999
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccC
Q 003038 619 KVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSS 698 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~ 698 (854)
+|+||++++..|..++...++|+.+++ +|.+++||+||+|||||++|++||+.+ ..+|+++||++|.
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~---------~p~~~~ll~G~~GtGKT~la~~la~~l---~~~~~~i~~s~~~- 525 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEH---------KPVGSFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEYM- 525 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTT---------SCSEEEEEECSTTSSHHHHHHHHHHHH---TCEEEEEEGGGCS-
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCC---------CCceEEEEECCCCCcHHHHHHHHHHHh---cCCEEEEechhhc-
Confidence 999999999999999999999998764 788999999999999999999999998 3689999999999
Q ss_pred cCCCccccccccccC-CCCCC-chHH--HHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeecCCe
Q 003038 699 TRADSTEDSRNKRSR-DEQSC-SYIE--RFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDA 774 (854)
Q Consensus 699 ~~~~s~e~~~~~rl~-~~~g~-g~~e--~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~~~a 774 (854)
+.|.+++++ .++|| ||.+ .+++++++.|++||||||||++++++++.|+++||+|+++|..|+.++|+|+
T Consensus 526 ------~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~ 599 (758)
T 1r6b_X 526 ------ERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNV 599 (758)
T ss_dssp ------SSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTE
T ss_pred ------chhhHhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCe
Confidence 778888888 46778 8876 7899999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCC
Q 003038 775 IVILSCES 782 (854)
Q Consensus 775 IiIlTsn~ 782 (854)
+||+|||.
T Consensus 600 ~iI~tsN~ 607 (758)
T 1r6b_X 600 VLVMTTNA 607 (758)
T ss_dssp EEEEEECS
T ss_pred EEEEecCc
Confidence 99999985
No 4
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=100.00 E-value=2.7e-47 Score=440.13 Aligned_cols=357 Identities=19% Similarity=0.277 Sum_probs=276.3
Q ss_pred chHHhhhHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCcHHHHHHHHcCCChhhHHHHHHHHHHHhccCCCCCCC
Q 003038 7 TIQQGLTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALELCFNVALNRLPASTST 86 (854)
Q Consensus 7 ~~~~~fT~~a~~aL~~A~~~A~~~gh~~Vt~eHLLlaLL~~~~s~l~~iL~~~gvd~~~~~aL~~~l~~~L~rlp~~~~~ 86 (854)
||+++||+.++++|+.|+++|+++||++|+|||||++||.++++.+.++|.++|+|+ +.|+..++..+.+.|...+
T Consensus 1 mm~~~ft~~a~~al~~A~~~A~~~~h~~v~~eHLLlaLl~~~~~~~~~iL~~~gvd~---~~l~~~l~~~l~~~~~~~~- 76 (468)
T 3pxg_A 1 MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGS---EKIQKEVESLIGRGQEMSQ- 76 (468)
T ss_dssp --CCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHHHHTCCH---HHHHHHHHTTSCCCCTTCS-
T ss_pred CcchhhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHHHcCCCH---HHHHHHHHHHhcccCCCCC-
Confidence 478999999999999999999999999999999999999999999999999999986 8999999988877664321
Q ss_pred CCCCCCccChhHHHHHHHHHHHHHHHhhhCCcccccccccccccCHHHHHHHhccCC--hHHHHHHHhCCCHHHHHHHHH
Q 003038 87 PMLGGHCQFPTISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIELEQLIISILDDP--SVSRVMREAGFSSTQVKSNVE 164 (854)
Q Consensus 87 ~~~~~~~~~p~~s~~L~~al~~A~~~~~~~~~~~~~~~~~~~~I~~eHLLLALL~d~--~~~~iL~~~Gi~~~~l~~~v~ 164 (854)
.++++|.+.++|+.|..+|..+ +.+ +|+++|||+||++++ .+.++|.++|++.+.++..+.
T Consensus 77 ----~~~~S~~~~~vL~~A~~~A~~~----g~~---------~I~teHLLlaLl~~~~~~a~~iL~~~gv~~~~l~~~i~ 139 (468)
T 3pxg_A 77 ----TIHYTPRAKKVIELSMDEARKL----GHS---------YVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVL 139 (468)
T ss_dssp ----SCEECHHHHHHHHHHHHHHHTT----TCS---------SBCHHHHHHHHHHTCCSHHHHHHHHTTCCHHHHHHHHH
T ss_pred ----CCCCCHHHHHHHHHHHHHHHHc----CCC---------eecHHHHHHHHHhcccchHHHHHHHcCCCHHHHHHHHH
Confidence 2345666666666655555433 213 599999999999975 578999999999999998887
Q ss_pred HHhhhhhccCCCCCC-CCCcccccccccccccccccccCCCCCCCCC--cHHHHHHHHHHhhccCcCCceeecCCCCCHH
Q 003038 165 QAVSLEICSQSTPVS-SNKSKESNVLVLSQTASATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIE 241 (854)
Q Consensus 165 ~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~ldpv--r~~ei~~v~~~L~r~~k~n~vLvGe~GvGKt 241 (854)
+.+.. ...... .........+++.+|+.+++..++.|++||+ |+++|++++++|.|++++||+|+||||||||
T Consensus 140 ~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT 215 (468)
T 3pxg_A 140 QLLGS----NETGSSAAGTNSNANTPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKT 215 (468)
T ss_dssp TTCCC----CCTTC-----CCSTHHHHHHSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTH
T ss_pred HHhcc----CcccccccCcCCccCchHHHHHHHHHHHHHhcCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHH
Confidence 53321 111000 0001111245688999999998889999998 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeCcccccccccccccccc
Q 003038 242 GVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLGDLEWAEFRASSSEQVR 321 (854)
Q Consensus 242 a~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfidel~~l~~~~~~~~~~~ 321 (854)
++|+++|.++..+++|..+.+..|+.++++ +.|+|+|+.+++.++++++.. +++||||| +
T Consensus 216 ~la~~la~~l~~~~~p~~l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~--~~~iLfiD-------~-------- 275 (468)
T 3pxg_A 216 AIAEGLAQQIINNEVPEILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQA--GNIILFID-------A-------- 275 (468)
T ss_dssp HHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHTC--CCCEEEEC-------C--------
T ss_pred HHHHHHHHHHHhCCCChhhcCCeEEEeeCC---ccccchHHHHHHHHHHHHHhc--CCeEEEEe-------C--------
Confidence 999999999999999999999999999998 669999999999999999975 68999999 1
Q ss_pred ccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchhhhhccCCCCCCCchHHHHhh------------
Q 003038 322 GYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLETLWSLHPLTIPAGSLSLSLI------------ 389 (854)
Q Consensus 322 ~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~~~v~i~~~sl~~al~------------ 389 (854)
.+++.++|.+...+|.++|||+||..+|+++++.+|+|.+ ||+.|.|++|+......
T Consensus 276 ---------~~~a~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~al~~--Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~ 344 (468)
T 3pxg_A 276 ---------AIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALER--RFQPIQVDQPSVDESIQILQGLRDRYEAH 344 (468)
T ss_dssp -----------------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHH--SEEEEECCCCCHHHHHHHHHHTTTTSGGG
T ss_pred ---------chhHHHHHHHhhcCCCEEEEecCCHHHHHHHhhcCHHHHH--hCccceeCCCCHHHHHHHHHHHHHHHHHh
Confidence 1356677766333447999999999999999999999999 99999999987554321
Q ss_pred ----cccch------hhhccccCCcCCCcccccccchhhh
Q 003038 390 ----TTDSD------LQSQSTSKKAESGVSWLLFEGEEEN 419 (854)
Q Consensus 390 ----~~~s~------~~~~~~~~~~~pdkaidlld~a~~~ 419 (854)
+.+.+ +..+|+.++++||++++++|+|++.
T Consensus 345 ~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~ 384 (468)
T 3pxg_A 345 HRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSK 384 (468)
T ss_dssp SSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHH
Confidence 11111 3357999999999999999998766
No 5
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.85 E-value=3.9e-21 Score=208.53 Aligned_cols=163 Identities=23% Similarity=0.375 Sum_probs=145.0
Q ss_pred hhHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhC
Q 003038 604 LNSENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFG 683 (854)
Q Consensus 604 ~~~e~l~~L~~~L~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg 683 (854)
.+.+.+..|++.|.++++||+.++..|..++.+.+.|+.++. +|.+++||+||+|+|||++|++||+.++.
T Consensus 3 ~~~~~l~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~---------~~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 3 GEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPN---------RPIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp HHHHHHHTHHHHHHTTCCSCHHHHHHHHHHHHHHHHTCSCTT---------SCSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCCCC---------CCceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 467889999999999999999999999999999999988764 78889999999999999999999999998
Q ss_pred CCCceEEEccccccCcCCCccccccccccCC-CCCC-chHH--HHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcC
Q 003038 684 SHNNFVSIALSSFSSTRADSTEDSRNKRSRD-EQSC-SYIE--RFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESG 759 (854)
Q Consensus 684 ~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~-~~g~-g~~e--~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G 759 (854)
...+|+.++|+.+. +.....++++ ++++ |+.. .+.++++..|++||||||||++++.+|+.|+++|++|
T Consensus 74 ~~~~~~~~~~~~~~-------~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~ 146 (311)
T 4fcw_A 74 TEEAMIRIDMTEYM-------EKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDG 146 (311)
T ss_dssp CGGGEEEEEGGGCC-------STTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHS
T ss_pred CCcceEEeeccccc-------ccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcC
Confidence 88899999999887 3443444442 3444 5554 7899999999999999999999999999999999999
Q ss_pred eEecCCCceeecCCeEEEEecCC
Q 003038 760 RIVTSSGDEVSLGDAIVILSCES 782 (854)
Q Consensus 760 ~l~d~~G~~v~~~~aIiIlTsn~ 782 (854)
.+++..|+.++++++|||+|||.
T Consensus 147 ~~~~~~~~~~~~~~~iiI~ttn~ 169 (311)
T 4fcw_A 147 RLTDSHGRTVDFRNTVIIMTSNL 169 (311)
T ss_dssp EEECTTSCEEECTTEEEEEEEST
T ss_pred EEEcCCCCEEECCCcEEEEeccc
Confidence 99999999999999999999986
No 6
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.83 E-value=6.1e-20 Score=221.64 Aligned_cols=151 Identities=13% Similarity=0.128 Sum_probs=109.9
Q ss_pred HHHHHHHHHH-hhc---------cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHH
Q 003038 212 NEDVMYVIEN-LMS---------KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEV 281 (854)
Q Consensus 212 ~~ei~~v~~~-L~r---------~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~ 281 (854)
-++|+.+++. |.. +-.+.++|+||||||||.+|+++|.. .+++++.++...+.+.|.|+.
T Consensus 213 ~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e----------lg~~~~~v~~~~l~sk~~ges 282 (806)
T 3cf2_A 213 LAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE----------TGAFFFLINGPEIMSKLAGES 282 (806)
T ss_dssp HHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT----------TTCEEEEEEHHHHHSSCTTHH
T ss_pred HHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH----------hCCeEEEEEhHHhhcccchHH
Confidence 4567777765 322 23567999999999999999999965 378999999999999999999
Q ss_pred HHHHHHHHHHHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHH
Q 003038 282 EQRVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMR 360 (854)
Q Consensus 282 E~rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k 360 (854)
|+++++++..++.. .|+|||||||+.| ..+....+. .....+..+-.++.....++.+.+||||+..+
T Consensus 283 e~~lr~lF~~A~~~--~PsIIfIDEiDal~~~r~~~~~~------~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d--- 351 (806)
T 3cf2_A 283 ESNLRKAFEEAEKN--APAIIFIDELDAIAPKREKTHGE------VERRIVSQLLTLMDGLKQRAHVIVMAATNRPN--- 351 (806)
T ss_dssp HHHHHHHHHHHTTS--CSEEEEEESGGGTCCTTTTCCCT------THHHHHHHHHTHHHHCCGGGCEEEEEECSSTT---
T ss_pred HHHHHHHHHHHHHc--CCeEEEEehhcccccccCCCCCh------HHHHHHHHHHHHHhcccccCCEEEEEecCChh---
Confidence 99999999999986 7999999999999 554322111 11234444444442212233699999998654
Q ss_pred hhccCCchhhhhcc-CCCCCCCchHH
Q 003038 361 CKSGHPSLETLWSL-HPLTIPAGSLS 385 (854)
Q Consensus 361 ~~~~~pale~~~~~-~~v~i~~~sl~ 385 (854)
..||+|.|--|| +.|.|+.|+..
T Consensus 352 --~LD~ALrR~GRFd~~I~i~~Pd~~ 375 (806)
T 3cf2_A 352 --SIDPALRRFGRFDREVDIGIPDAT 375 (806)
T ss_dssp --TSCTTTTSTTSSCEEEECCCCCHH
T ss_pred --hcCHHHhCCcccceEEecCCCCHH
Confidence 579999885566 34566655543
No 7
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=99.82 E-value=1.5e-19 Score=175.94 Aligned_cols=140 Identities=16% Similarity=0.165 Sum_probs=120.1
Q ss_pred chHHhhhHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCcHHHHHHHHcCCChhhHHHHHHHHHHHhccCCCCCCC
Q 003038 7 TIQQGLTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALELCFNVALNRLPASTST 86 (854)
Q Consensus 7 ~~~~~fT~~a~~aL~~A~~~A~~~gh~~Vt~eHLLlaLL~~~~s~l~~iL~~~gvd~~~~~aL~~~l~~~L~rlp~~~~~ 86 (854)
+|+++||++++++|+.|+++|+++||.+|+|||||++|+.++++.+.++|.++|+++ +.++..++..+.+.|...+
T Consensus 2 ~m~~~~t~~~~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gv~~---~~l~~~l~~~l~~~~~~~~- 77 (146)
T 3fh2_A 2 AMFERFTDRARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESMGISL---DAVRQEVEEIIGQGSQPTT- 77 (146)
T ss_dssp GGGGGBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHHHTTCCH---HHHHHHHHHHHCCCSCCCC-
T ss_pred chhhhcCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHhCCCChHHHHHHHcCCCH---HHHHHHHHHHhccCCCCCc-
Confidence 578999999999999999999999999999999999999999999999999999987 8999999999998886432
Q ss_pred CCCCCCccChhHHHHHHHHHHHHHHHhhhCCcccccccccccccCHHHHHHHhccCC--hHHHHHHHhCCCHHHHHHHHH
Q 003038 87 PMLGGHCQFPTISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIELEQLIISILDDP--SVSRVMREAGFSSTQVKSNVE 164 (854)
Q Consensus 87 ~~~~~~~~~p~~s~~L~~al~~A~~~~~~~~~~~~~~~~~~~~I~~eHLLLALL~d~--~~~~iL~~~Gi~~~~l~~~v~ 164 (854)
++++++|.+.++|+.|...|...+ ++ +|+++|||+||++++ .+.++|+++|++.+.++..+.
T Consensus 78 ---~~~~~s~~~~~vL~~A~~~a~~~~----~~---------~i~~eHlLlall~~~~~~a~~iL~~~gv~~~~l~~~l~ 141 (146)
T 3fh2_A 78 ---GHIPFTPRAKKVLELSLREGLQMG----HK---------YIGTEFLLLGLIREGEGVAAQVLVKLGADLPRVRQQVI 141 (146)
T ss_dssp ---SCCCBCHHHHHHHHHHHHHHHHTT----CS---------SBCHHHHHHHHHHHCSSHHHHHHHHHTCCHHHHHHHHH
T ss_pred ---CCCcCCHHHHHHHHHHHHHHHHcC----CC---------cCcHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHH
Confidence 234567777777777777776542 23 599999999999864 689999999999999999887
Q ss_pred HH
Q 003038 165 QA 166 (854)
Q Consensus 165 ~~ 166 (854)
+.
T Consensus 142 ~~ 143 (146)
T 3fh2_A 142 QL 143 (146)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 8
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=99.80 E-value=2.2e-19 Score=174.62 Aligned_cols=138 Identities=15% Similarity=0.115 Sum_probs=117.0
Q ss_pred chHHhhhHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCcHHHHHHHHcCCChhhHHHHHHHHHHHhccCCCCCCC
Q 003038 7 TIQQGLTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALELCFNVALNRLPASTST 86 (854)
Q Consensus 7 ~~~~~fT~~a~~aL~~A~~~A~~~gh~~Vt~eHLLlaLL~~~~s~l~~iL~~~gvd~~~~~aL~~~l~~~L~rlp~~~~~ 86 (854)
.++++||++++++|+.|+++|+++||.+|+|||||++||.++++.+.++|.++|+|+ +.++..++..+.+.|. .+
T Consensus 3 ~~~~~~T~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gvd~---~~l~~~l~~~l~~~~~-~~- 77 (145)
T 3fes_A 3 ANFNRFTQRAKKAIDLAFESAKSLGHNIVGSEHILLGLLREEEGIAAKVLSKVGFTE---AYLEGKIVDMEGKGEE-IS- 77 (145)
T ss_dssp -CCCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHHHTCCH---HHHHHHHHHHHCCCSC-CC-
T ss_pred CcccccCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCChHHHHHHHcCCCH---HHHHHHHHHHHhcCCC-CC-
Confidence 356899999999999999999999999999999999999999999999999999987 8999999999998886 21
Q ss_pred CCCCCCccChhHHHHHHHHHHHHHHHhhhCCcccccccccccccCHHHHHHHhccCC--hHHHHHHHhCCCHHHHHHHHH
Q 003038 87 PMLGGHCQFPTISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIELEQLIISILDDP--SVSRVMREAGFSSTQVKSNVE 164 (854)
Q Consensus 87 ~~~~~~~~~p~~s~~L~~al~~A~~~~~~~~~~~~~~~~~~~~I~~eHLLLALL~d~--~~~~iL~~~Gi~~~~l~~~v~ 164 (854)
++++++|.+.++|+.|...|...+ ++ +|+++|||+||++++ .+.++|+++|++.+.++..+.
T Consensus 78 ---~~~~~s~~~~~vl~~A~~~A~~~~----~~---------~v~~eHlLlAll~~~~~~a~~iL~~~gv~~~~l~~~i~ 141 (145)
T 3fes_A 78 ---EDIVLSPRSKQILELSGMFANKLK----TN---------YIGTEHILLAIIQEGEGIANKILNYAGVNDRTLAQLTI 141 (145)
T ss_dssp ---SCCEECHHHHHHHHHHHHHHHHTT----CS---------SBCHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ---CCCCCCHHHHHHHHHHHHHHHHcC----CC---------cccHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHH
Confidence 234466776666666666666542 23 599999999999875 478999999999999998887
Q ss_pred H
Q 003038 165 Q 165 (854)
Q Consensus 165 ~ 165 (854)
+
T Consensus 142 ~ 142 (145)
T 3fes_A 142 D 142 (145)
T ss_dssp H
T ss_pred H
Confidence 5
No 9
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=99.79 E-value=5.1e-19 Score=172.52 Aligned_cols=139 Identities=15% Similarity=0.199 Sum_probs=112.3
Q ss_pred chHHhhhHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCcHHHHHHHHcCCChhhHHHHHHHHHHHhccCCCCCCC
Q 003038 7 TIQQGLTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALELCFNVALNRLPASTST 86 (854)
Q Consensus 7 ~~~~~fT~~a~~aL~~A~~~A~~~gh~~Vt~eHLLlaLL~~~~s~l~~iL~~~gvd~~~~~aL~~~l~~~L~rlp~~~~~ 86 (854)
|++++||++++++|..|+++|+++||.+|+|||||++||.++++.+.++|.++|+|+ +.++..++..+.+.|...+
T Consensus 1 M~~~~~t~~~~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~---~~l~~~l~~~l~~~~~~~~- 76 (150)
T 2y1q_A 1 MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGS---EKIQKEVESLIGRAQEMSQ- 76 (150)
T ss_dssp ---CCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHHTTCCH---HHHHHHHHHHHCCC------
T ss_pred CcchhhCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCCHHHHHHHHcCCCH---HHHHHHHHHHhccCCcccc-
Confidence 467899999999999999999999999999999999999999999999999999987 8999999999998876432
Q ss_pred CCCCCCccChhHHHHHHHHHHHHHHHhhhCCcccccccccccccCHHHHHHHhccCC--hHHHHHHHhCCCHHHHHHHHH
Q 003038 87 PMLGGHCQFPTISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIELEQLIISILDDP--SVSRVMREAGFSSTQVKSNVE 164 (854)
Q Consensus 87 ~~~~~~~~~p~~s~~L~~al~~A~~~~~~~~~~~~~~~~~~~~I~~eHLLLALL~d~--~~~~iL~~~Gi~~~~l~~~v~ 164 (854)
.+++++.+.++|+.|...|... +.+ +|+++|||+||++++ .+.++|+++|++.+.++..+.
T Consensus 77 ----~~~~s~~~~~vL~~A~~~A~~~----~~~---------~i~~ehlLlall~~~~~~a~~~L~~~gi~~~~l~~~i~ 139 (150)
T 2y1q_A 77 ----TIHYTPRAKKVIELSMDEARKL----GHS---------YVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVL 139 (150)
T ss_dssp ----CCEECHHHHHHHHHHHHHHHHT----TCS---------SBCHHHHHHHHHHHCCSHHHHHHHHTTCCHHHHHHHHH
T ss_pred ----cCCCCHHHHHHHHHHHHHHHHc----CCC---------eecHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHH
Confidence 2345666666666666666553 223 599999999999764 457999999999999998887
Q ss_pred HH
Q 003038 165 QA 166 (854)
Q Consensus 165 ~~ 166 (854)
+.
T Consensus 140 ~~ 141 (150)
T 2y1q_A 140 QL 141 (150)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 10
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=99.79 E-value=1.1e-18 Score=169.60 Aligned_cols=141 Identities=22% Similarity=0.277 Sum_probs=113.4
Q ss_pred chHHhhhHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCcHHHHHHHHcCCChhhHHHHHHHHHHHhccCCCCCCC
Q 003038 7 TIQQGLTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALELCFNVALNRLPASTST 86 (854)
Q Consensus 7 ~~~~~fT~~a~~aL~~A~~~A~~~gh~~Vt~eHLLlaLL~~~~s~l~~iL~~~gvd~~~~~aL~~~l~~~L~rlp~~~~~ 86 (854)
|++++||++++++|+.|+++|+++||.+|+|||||++||.++++.+.++|.++|+++ +.++..++..+.++|...++
T Consensus 1 M~~~~~t~~~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~---~~l~~~l~~~l~~~p~~~~~ 77 (148)
T 1khy_A 1 MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINA---GQLRTDINQALNRLPQVEGT 77 (148)
T ss_dssp ---CCBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHTCTTCSHHHHHHHHTCCH---HHHHHHHHHHHTTSCCC---
T ss_pred CChhhhhHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHcCCCchHHHHHHHcCCCH---HHHHHHHHHHHHhCCCCCCC
Confidence 467899999999999999999999999999999999999999999999999999986 89999999999998876431
Q ss_pred CCCCCCccChhHHHHHHHHHHHHHHHhhhCCcccccccccccccCHHHHHHHhccCC-hHHHHHHHhCCCHHHHHHHHHH
Q 003038 87 PMLGGHCQFPTISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIELEQLIISILDDP-SVSRVMREAGFSSTQVKSNVEQ 165 (854)
Q Consensus 87 ~~~~~~~~~p~~s~~L~~al~~A~~~~~~~~~~~~~~~~~~~~I~~eHLLLALL~d~-~~~~iL~~~Gi~~~~l~~~v~~ 165 (854)
+ +.+++++.+.++|+.|...|...+ ++ +|+++|||+||+++. .+.++|+.+|++.+.++..+.+
T Consensus 78 ~--~~~~~s~~~~~vl~~A~~~a~~~~----~~---------~i~~ehlLlall~~~~~~~~~L~~~gi~~~~l~~~l~~ 142 (148)
T 1khy_A 78 G--GDVQPSQDLVRVLNLCDKLAQKRG----DN---------FISSELFVLAALESRGTLADILKAAGATTANITQAIEQ 142 (148)
T ss_dssp ------CBCHHHHHHHHHHHHHHHHHT----CS---------SBCHHHHHHHHHTSCHHHHHHHHHTTCCHHHHHHHHHC
T ss_pred C--CCcCcCHHHHHHHHHHHHHHHHcC----CC---------eecHHHHHHHHHcCCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 1 123456666666666666665542 23 599999999999643 5789999999999999887763
No 11
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=99.74 E-value=1e-17 Score=167.17 Aligned_cols=140 Identities=14% Similarity=0.115 Sum_probs=109.0
Q ss_pred CccchHHhhhHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCcHHHHHHHHcCCChhhHHHHHHHHHHHhccCCCC
Q 003038 4 GGCTIQQGLTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALELCFNVALNRLPAS 83 (854)
Q Consensus 4 ~~~~~~~~fT~~a~~aL~~A~~~A~~~gh~~Vt~eHLLlaLL~~~~s~l~~iL~~~gvd~~~~~aL~~~l~~~L~rlp~~ 83 (854)
.+.+++++||++++++|+.|+++|+++||++|+|||||++||.++++.+.++|.++|+|+ +.|+..++ .++++|..
T Consensus 17 ~l~~~~~kfT~~a~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~~~~~a~~iL~~~gvd~---~~l~~~l~-~l~~~p~~ 92 (171)
T 3zri_A 17 ELPTLIAKLNAQSKLALEQAASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVLKQAGLEV---DQVKQAIA-STYSREQV 92 (171)
T ss_dssp CHHHHHHHBCHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHTTCTTSHHHHHHHHTTCCH---HHHHHHHH-HHSCCCCC
T ss_pred hHHHHHHHcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHccCcHHHHHHHHcCCCH---HHHHHHHH-HHhcCCCC
Confidence 456799999999999999999999999999999999999999999999999999999987 89999999 99998864
Q ss_pred CCCCCCCCCccChhHHHHHHHHHHHHH-HHhhhCCcccccccccccccCHHHHHHHhccCChHHHHH----HH-hCCCHH
Q 003038 84 TSTPMLGGHCQFPTISNALVAAFKRAQ-AHQRRGSIENQQQPLLAVKIELEQLIISILDDPSVSRVM----RE-AGFSST 157 (854)
Q Consensus 84 ~~~~~~~~~~~~p~~s~~L~~al~~A~-~~~~~~~~~~~~~~~~~~~I~~eHLLLALL~d~~~~~iL----~~-~Gi~~~ 157 (854)
.+ +.++++|.+.++|+.|..+|. .+ +++ +|+++|||+||++++ ..+++ .. ..|+.+
T Consensus 93 ~~----~~~~~S~~l~~vL~~A~~~A~l~~----gd~---------~I~teHLLLALl~~~-~~~~~~~~~~~l~~i~~~ 154 (171)
T 3zri_A 93 LD----TYPAFSPLLVELLQEAWLLSSTEL----EQA---------ELRSGAIFLAALTRA-DRYLSFKLISLFEGINRE 154 (171)
T ss_dssp CS----SCCEECHHHHHHHHHHHHHHHTTT----CCS---------SBCHHHHHHHHHHTH-HHHSCHHHHHHTTTSCHH
T ss_pred CC----CCCCcCHHHHHHHHHHHHHHHHHc----CCC---------EEcHHHHHHHHHhCh-hhhHHHHhhHHHHcCCHH
Confidence 32 223445555555555555554 33 324 599999999999986 22222 22 257788
Q ss_pred HHHHHHHH
Q 003038 158 QVKSNVEQ 165 (854)
Q Consensus 158 ~l~~~v~~ 165 (854)
.++..+..
T Consensus 155 ~L~~~~~~ 162 (171)
T 3zri_A 155 NLKKHFAM 162 (171)
T ss_dssp HHHHTHHH
T ss_pred HHHHHHHH
Confidence 77766543
No 12
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.71 E-value=1.3e-17 Score=203.90 Aligned_cols=152 Identities=13% Similarity=0.106 Sum_probs=107.3
Q ss_pred cHHHHHHHHHHhhc-------------cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccc
Q 003038 211 RNEDVMYVIENLMS-------------KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMN 277 (854)
Q Consensus 211 r~~ei~~v~~~L~r-------------~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~ 277 (854)
.++.++++.+.+.. +..++++|+||||||||++++.+|..+ +..++.++...+...+
T Consensus 209 ~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l----------~~~~i~v~~~~l~~~~ 278 (806)
T 1ypw_A 209 CRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFLINGPEIMSKL 278 (806)
T ss_dssp CSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT----------TCEEEEEEHHHHSSSS
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc----------CCcEEEEEchHhhhhh
Confidence 45556666555543 456789999999999999999999763 5678999998888889
Q ss_pred hHHHHHHHHHHHHHHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHH
Q 003038 278 RVEVEQRVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQ 356 (854)
Q Consensus 278 rge~E~rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ 356 (854)
.|+++.+++.++..+... .+.|||||||+.+ +.+..... ....+....+..++.....+..+.+|++|+..
T Consensus 279 ~g~~~~~l~~vf~~a~~~--~p~il~iDEid~l~~~~~~~~~------~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~ 350 (806)
T 1ypw_A 279 AGESESNLRKAFEEAEKN--APAIIFIDELDAIAPKREKTHG------EVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (806)
T ss_dssp TTHHHHHHHHHHHHHHHH--CSEEEEEESGGGTSCTTSCCCS------HHHHHHHHHHHHHHHSSCTTSCCEEEEECSCT
T ss_pred hhhHHHHHHHHHHHHHhc--CCcEEEeccHHHhhhccccccc------hHHHHHHHHHHHHhhhhcccccEEEecccCCc
Confidence 999999999999999876 6899999999999 65432100 11123444555555432223369999999876
Q ss_pred HHHHhhccCCchhhhhcc-CCCCCCCchHH
Q 003038 357 SYMRCKSGHPSLETLWSL-HPLTIPAGSLS 385 (854)
Q Consensus 357 ey~k~~~~~pale~~~~~-~~v~i~~~sl~ 385 (854)
+ ..+|++.+.-+| +.+.++.+...
T Consensus 351 ~-----~ld~al~r~gRf~~~i~i~~p~~~ 375 (806)
T 1ypw_A 351 N-----SIDPALRRFGRFDREVDIGIPDAT 375 (806)
T ss_dssp T-----TSCTTTTSTTSSCEEECCCCCCHH
T ss_pred h-----hcCHHHhcccccccccccCCCCHH
Confidence 4 468888875455 33455544443
No 13
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=99.69 E-value=9.2e-17 Score=155.25 Aligned_cols=135 Identities=16% Similarity=0.192 Sum_probs=105.9
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCcHHHHHHHHcCCChhhHHHHHHHHHHHhccC-CCCCCCCCCC
Q 003038 12 LTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALELCFNVALNRL-PASTSTPMLG 90 (854)
Q Consensus 12 fT~~a~~aL~~A~~~A~~~gh~~Vt~eHLLlaLL~~~~s~l~~iL~~~gvd~~~~~aL~~~l~~~L~rl-p~~~~~~~~~ 90 (854)
||++++++|+.|+++|+++||.+|+|||||++||.+++ +.++|.++|+++ +.++..++..+.+. |...+.+..+
T Consensus 2 ~t~~~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~--~~~iL~~~g~~~---~~l~~~l~~~l~~~~p~~~~~~~~~ 76 (143)
T 1k6k_A 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPS--AREALEACSVDL---VALRQELEAFIEQTTPVLPASEEER 76 (143)
T ss_dssp BCHHHHHHHHHHHHHHHHHTBSEECHHHHHHHHTTCHH--HHHHHHHTTCCH---HHHHHHHHHHHHHHSCBCCSSCSCC
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCch--HHHHHHHcCCCH---HHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 89999999999999999999999999999999998763 899999999986 78999999999886 7643101001
Q ss_pred CCccChhHHHHHHHHHHHHHHHhhhCCcccccccccccccCHHHHHHHhccCC--hHHHHHHHhCCCHHHHHHHHH
Q 003038 91 GHCQFPTISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIELEQLIISILDDP--SVSRVMREAGFSSTQVKSNVE 164 (854)
Q Consensus 91 ~~~~~p~~s~~L~~al~~A~~~~~~~~~~~~~~~~~~~~I~~eHLLLALL~d~--~~~~iL~~~Gi~~~~l~~~v~ 164 (854)
. |.+++.+.++++.|+.++++.+++ +|+++|||+||++++ .+.++|+++|++.+.++..+.
T Consensus 77 ~----~~~s~~~~~~l~~A~~~A~~~~~~---------~i~~ehLLlall~~~~~~~~~iL~~~gi~~~~l~~~i~ 139 (143)
T 1k6k_A 77 D----TQPTLSFQRVLQRAVFHVQSSGRN---------EVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFIS 139 (143)
T ss_dssp S----CEECHHHHHHHHHHHHHHHSSSCS---------CBCHHHHHHHHTTCTTSHHHHHHHHTTCCHHHHHHHHH
T ss_pred C----CCCCHHHHHHHHHHHHHHHHcCCC---------ccCHHHHHHHHHhCcCcHHHHHHHHcCCCHHHHHHHHH
Confidence 2 334444555555555554432223 599999999999865 478999999999999987665
No 14
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.69 E-value=1.7e-17 Score=164.70 Aligned_cols=177 Identities=21% Similarity=0.322 Sum_probs=140.3
Q ss_pred ccccccccccccCCCCCCCCC--cHHHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEE
Q 003038 190 VLSQTASATKVSKPRVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLP 267 (854)
Q Consensus 190 ~~~~~~~~~~~~~~~g~ldpv--r~~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~ 267 (854)
.+.++..++....+...++.+ |+++++++++.|.++..++++|+||||+|||++++.++..+.....|..+.+..++.
T Consensus 4 ~l~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~ 83 (187)
T 2p65_A 4 ALEKYSRDLTALARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVS 83 (187)
T ss_dssp CTTTTEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEE
T ss_pred HHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEE
Confidence 355565565554445667765 999999999999988889999999999999999999999999888888888999999
Q ss_pred ccccccccc--chHHHHHHHHHHHHHHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhccc--CC
Q 003038 268 LSISSFRHM--NRVEVEQRVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG--IG 342 (854)
Q Consensus 268 l~~~~l~~~--~rge~E~rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~--~~ 342 (854)
+++..+..+ +.|.++..+..++..+... +++.||||||+|++ +.+... . ...++.++|.. ..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vl~iDe~~~l~~~~~~~-~-----------~~~~~~~~l~~~~~~ 150 (187)
T 2p65_A 84 LDLSSLIAGAKYRGDFEERLKSILKEVQDA-EGQVVMFIDEIHTVVGAGAVA-E-----------GALDAGNILKPMLAR 150 (187)
T ss_dssp ECHHHHHHHCCSHHHHHHHHHHHHHHHHHT-TTSEEEEETTGGGGSSSSSSC-T-----------TSCCTHHHHHHHHHT
T ss_pred EeHHHhhcCCCchhHHHHHHHHHHHHHHhc-CCceEEEEeCHHHhccccccc-c-----------cchHHHHHHHHHHhc
Confidence 998887653 8899999999999998875 67899999999999 654311 0 00122233321 22
Q ss_pred CCceEEEEEecCHHHHHHhhccCCchhhhhccCCCCCCCch
Q 003038 343 ENARFWLMGIATFQSYMRCKSGHPSLETLWSLHPLTIPAGS 383 (854)
Q Consensus 343 g~g~l~lIgatT~~ey~k~~~~~pale~~~~~~~v~i~~~s 383 (854)
+ .+.+|++|+..++.+.+..+|+|.+ ||+.|.|+.|+
T Consensus 151 ~--~~~ii~~~~~~~~~~~~~~~~~l~~--R~~~i~i~~p~ 187 (187)
T 2p65_A 151 G--ELRCIGATTVSEYRQFIEKDKALER--RFQQILVEQPS 187 (187)
T ss_dssp T--CSCEEEEECHHHHHHHTTTCHHHHH--HEEEEECCSCC
T ss_pred C--CeeEEEecCHHHHHHHHhccHHHHH--hcCcccCCCCC
Confidence 3 5999999999999988889999999 88888888763
No 15
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.67 E-value=4.1e-17 Score=162.00 Aligned_cols=168 Identities=21% Similarity=0.324 Sum_probs=133.0
Q ss_pred CCCCCCC--cHHHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccc--cchH
Q 003038 204 RVSLDPI--RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRH--MNRV 279 (854)
Q Consensus 204 ~g~ldpv--r~~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~--~~rg 279 (854)
...++++ |+++++++++.|.++..++++|+||||+|||++++.++..+.....|..+.+..++.+++..+.. .+.|
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRG 97 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHH
T ss_pred hccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccc
Confidence 4556665 99999999999998888999999999999999999999999998888888899999999988874 3889
Q ss_pred HHHHHHHHHHHHHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHH
Q 003038 280 EVEQRVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSY 358 (854)
Q Consensus 280 e~E~rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey 358 (854)
+++..+++++..+... ++++||||||++++ +.+...... ....-+..++. .+ .+.+|++|+...+
T Consensus 98 ~~~~~~~~~~~~~~~~-~~~~vl~iDe~~~l~~~~~~~~~~---------~~~~~l~~~~~--~~--~~~~i~~~~~~~~ 163 (195)
T 1jbk_A 98 EFEERLKGVLNDLAKQ-EGNVILFIDELHTMVGAGKADGAM---------DAGNMLKPALA--RG--ELHCVGATTLDEY 163 (195)
T ss_dssp HHHHHHHHHHHHHHHS-TTTEEEEEETGGGGTT------CC---------CCHHHHHHHHH--TT--SCCEEEEECHHHH
T ss_pred cHHHHHHHHHHHHhhc-CCCeEEEEeCHHHHhccCcccchH---------HHHHHHHHhhc--cC--CeEEEEeCCHHHH
Confidence 9999999999988765 56899999999999 654221000 01111222222 23 5999999999999
Q ss_pred HHhhccCCchhhhhccCCCCCCCchHHHH
Q 003038 359 MRCKSGHPSLETLWSLHPLTIPAGSLSLS 387 (854)
Q Consensus 359 ~k~~~~~pale~~~~~~~v~i~~~sl~~a 387 (854)
...+..+|+|.+ ||+.+.++.++....
T Consensus 164 ~~~~~~~~~l~~--r~~~i~~~~p~~~~~ 190 (195)
T 1jbk_A 164 RQYIEKDAALER--RFQKVFVAEPSVEDT 190 (195)
T ss_dssp HHHTTTCHHHHT--TEEEEECCCCCHHHH
T ss_pred HHHHhcCHHHHH--HhceeecCCCCHHHH
Confidence 998889999999 888888888876653
No 16
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.52 E-value=4.6e-15 Score=165.20 Aligned_cols=146 Identities=15% Similarity=0.203 Sum_probs=96.7
Q ss_pred HHHHHHhhcCcccccHHHHHHHHHHHHHh----hcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCC
Q 003038 609 LTSLCNALEKKVPWQKDTVYDIANTVLKC----RSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGS 684 (854)
Q Consensus 609 l~~L~~~L~~~V~GQ~~av~~Ia~~v~~~----rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~ 684 (854)
...|.+.|.+.|+||++++..|..++... +.+..... ...+...+||+||+|+|||++|++||+.+
T Consensus 6 ~~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~-------~~~~~~~vll~GppGtGKT~la~~ia~~~--- 75 (363)
T 3hws_A 6 PHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNG-------VELGKSNILLIGPTGSGKTLLAETLARLL--- 75 (363)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSS-------CCCCCCCEEEECCTTSSHHHHHHHHHHHT---
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHHHhhhcccccccc-------ccCCCCeEEEECCCCCCHHHHHHHHHHHc---
Confidence 34677888889999999999999988533 33332211 11345689999999999999999999988
Q ss_pred CCceEEEccccccCcCCCccccccccccCCCCCC-chH--HHHHHHHHc-------CCCEEEEEecCCCCCHH-------
Q 003038 685 HNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSC-SYI--ERFAEAVSN-------NPHRVFLIEDVEQADYC------- 747 (854)
Q Consensus 685 ~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~-g~~--e~L~eav~~-------~p~~ViliDEieka~~~------- 747 (854)
..+|+.++++.+.. .+| |+. ..+.+++.. .+.+||||||||++++.
T Consensus 76 ~~~~~~~~~~~l~~-----------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~ 138 (363)
T 3hws_A 76 DVPFTMADATTLTE-----------------AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSIT 138 (363)
T ss_dssp TCCEEEEEHHHHTT-----------------CHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---
T ss_pred CCCEEEechHHhcc-----------------cccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccc
Confidence 46899999886541 112 332 134444433 35679999999999987
Q ss_pred -------HHHHHHHhhhcCeE---ecCCCceeecCCeEEEEecCC
Q 003038 748 -------SQKGFKRAIESGRI---VTSSGDEVSLGDAIVILSCES 782 (854)
Q Consensus 748 -------v~~~Ll~~le~G~l---~d~~G~~v~~~~aIiIlTsn~ 782 (854)
+|+.|+++|| |.+ .+..|+.+++.++++|+|||.
T Consensus 139 ~~~~~~~~~~~Ll~~le-g~~~~~~~~~~~~~~~~~~~~i~tsn~ 182 (363)
T 3hws_A 139 RDVSGEGVQQALLKLIE-GTVAAVPPQGGRKHPQQEFLQVDTSKI 182 (363)
T ss_dssp CHHHHHHHHHHHHHHHH-CC----------------CCCCCTTSS
T ss_pred cccchHHHHHHHHHHhc-CceeeccCccccccCCCceEEEECCCc
Confidence 9999999999 653 455667666666666655553
No 17
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.49 E-value=2e-14 Score=160.67 Aligned_cols=153 Identities=11% Similarity=0.137 Sum_probs=97.8
Q ss_pred HHHHHHhhcCcccccHHHHHHHHHHH----HHhhcCC-------CcccCCCc-CCcccCcceeEEEecCCCchHHHHHHH
Q 003038 609 LTSLCNALEKKVPWQKDTVYDIANTV----LKCRSGT-------MRRKGKFK-DHSEVKEETWLFFQGVDADAKEKIAKE 676 (854)
Q Consensus 609 l~~L~~~L~~~V~GQ~~av~~Ia~~v----~~~rsgl-------~~~~~~~~-~~~~~kp~~~lLf~Gp~GvGKt~lAr~ 676 (854)
++.|++.|.+.|+||++++..|..+| .+.+.|+ .++.++.. .....++..++||+||+|+|||++|++
T Consensus 12 ~~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~ 91 (376)
T 1um8_A 12 PKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQT 91 (376)
T ss_dssp HHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHH
T ss_pred HHHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHH
Confidence 56889999999999999999999998 4555544 11110000 000013456899999999999999999
Q ss_pred HHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCC-chH--HHHHHHH-------HcCCCEEEEEecCCCCCH
Q 003038 677 LARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSC-SYI--ERFAEAV-------SNNPHRVFLIEDVEQADY 746 (854)
Q Consensus 677 LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~-g~~--e~L~eav-------~~~p~~ViliDEieka~~ 746 (854)
||+.+ ..+|+.++++.+.. . +| |+. ..+.+.+ ...+++|||||||+++++
T Consensus 92 la~~l---~~~~~~~~~~~~~~-------~----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~ 151 (376)
T 1um8_A 92 LAKHL---DIPIAISDATSLTE-------A----------GYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISR 151 (376)
T ss_dssp HHHHT---TCCEEEEEGGGCC-------------------------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--
T ss_pred HHHHh---CCCEEEecchhhhh-------c----------CcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhh
Confidence 99988 35789999886651 0 11 111 1233332 334678999999999999
Q ss_pred H--------------HHHHHHHhhhcCeE--ecCCCce--------eecCCeEEEEecC
Q 003038 747 C--------------SQKGFKRAIESGRI--VTSSGDE--------VSLGDAIVILSCE 781 (854)
Q Consensus 747 ~--------------v~~~Ll~~le~G~l--~d~~G~~--------v~~~~aIiIlTsn 781 (854)
. +|+.|+++|+++.+ .+..|+. +..+|.+||+|+|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~ 210 (376)
T 1um8_A 152 LSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGA 210 (376)
T ss_dssp ------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEEC
T ss_pred hcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCC
Confidence 8 99999999998854 4445555 4445666666665
No 18
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.45 E-value=2.8e-13 Score=151.59 Aligned_cols=141 Identities=13% Similarity=0.134 Sum_probs=104.5
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeC
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLG 305 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfid 305 (854)
..+.++|+||||||||.+|+++|... ++.|+.++.+.+.++|.||.|++++++|..++.. .|+|||||
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~----------~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~--aP~IIFiD 248 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHT----------DCKFIRVSGAELVQKYIGEGSRMVRELFVMAREH--APSIIFMD 248 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHH----------TCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHT--CSEEEEEE
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhh----------CCCceEEEhHHhhccccchHHHHHHHHHHHHHHh--CCceEeee
Confidence 56899999999999999999999874 7799999999999999999999999999999986 79999999
Q ss_pred ccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchhhhhcc-CCCCCCCch
Q 003038 306 DLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLETLWSL-HPLTIPAGS 383 (854)
Q Consensus 306 el~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~-~~v~i~~~s 383 (854)
||+.+ ..+..++.+. ...+....+.+-+.+....+++.+.+||||+..+ ..||||-|--|| ..|.|+-|+
T Consensus 249 EiDai~~~R~~~~~~~---~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd-----~LDpAllRpGRfD~~I~i~lPd 320 (405)
T 4b4t_J 249 EIDSIGSTRVEGSGGG---DSEVQRTMLELLNQLDGFETSKNIKIIMATNRLD-----ILDPALLRPGRIDRKIEFPPPS 320 (405)
T ss_dssp SSSCCTTSCSCSSSGG---GGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSS-----SSCHHHHSTTSSCCEEECCCCC
T ss_pred cchhhccCCCCCCCCC---cHHHHHHHHHHHHhhhccCCCCCeEEEeccCChh-----hCCHhHcCCCcCceEEEcCCcC
Confidence 99999 5543221110 1112233333333332212233699999999655 579999875566 456666665
Q ss_pred HHH
Q 003038 384 LSL 386 (854)
Q Consensus 384 l~~ 386 (854)
...
T Consensus 321 ~~~ 323 (405)
T 4b4t_J 321 VAA 323 (405)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 19
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.44 E-value=2.4e-13 Score=146.57 Aligned_cols=152 Identities=16% Similarity=0.246 Sum_probs=107.3
Q ss_pred HHHHHHhhcCcccccHHHHHHHHHHHHH--hhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCC
Q 003038 609 LTSLCNALEKKVPWQKDTVYDIANTVLK--CRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHN 686 (854)
Q Consensus 609 l~~L~~~L~~~V~GQ~~av~~Ia~~v~~--~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~ 686 (854)
...|.+.|.+.|+||++++..|..++.. .+.++..+.+ ..++...+||+||+|+|||++|++||+.+ ..
T Consensus 6 ~~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~------~~~~~~~vll~G~~GtGKT~la~~la~~l---~~ 76 (310)
T 1ofh_A 6 PREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLR------HEVTPKNILMIGPTGVGKTEIARRLAKLA---NA 76 (310)
T ss_dssp HHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHH------HHCCCCCEEEECCTTSSHHHHHHHHHHHH---TC
T ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhccccc------ccCCCceEEEECCCCCCHHHHHHHHHHHh---CC
Confidence 3578889999999999999999999876 3333332110 01234589999999999999999999988 35
Q ss_pred ceEEEccccccCcCCCccccccccccCCCCCCchHHHHHH----HHHc-CCCEEEEEecCCCCCHHH------------H
Q 003038 687 NFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAE----AVSN-NPHRVFLIEDVEQADYCS------------Q 749 (854)
Q Consensus 687 ~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~e----av~~-~p~~ViliDEieka~~~v------------~ 749 (854)
.++.++++.+... .+ .+....+....+.+ .+.. ++++||||||||++++.. +
T Consensus 77 ~~~~i~~~~~~~~------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~ 145 (310)
T 1ofh_A 77 PFIKVEATKFTEV------GY-----VGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQ 145 (310)
T ss_dssp CEEEEEGGGGSSC------CS-----GGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHH
T ss_pred CEEEEcchhcccC------Cc-----cCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHH
Confidence 7999999877621 00 00000011111211 1111 246899999999998775 9
Q ss_pred HHHHHhhhcCeEecCCCceeecCCeEEEEecC
Q 003038 750 KGFKRAIESGRIVTSSGDEVSLGDAIVILSCE 781 (854)
Q Consensus 750 ~~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn 781 (854)
+.|+++|+++.+....| .++..+.+||+++|
T Consensus 146 ~~Ll~~le~~~~~~~~~-~~~~~~~~~i~~~~ 176 (310)
T 1ofh_A 146 RDLLPLVEGSTVSTKHG-MVKTDHILFIASGA 176 (310)
T ss_dssp HHHHHHHHCCEEEETTE-EEECTTCEEEEEEC
T ss_pred HHHHHHhcCCeEecccc-cccCCcEEEEEcCC
Confidence 99999999998887665 67788999999875
No 20
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.41 E-value=6.7e-13 Score=149.00 Aligned_cols=141 Identities=10% Similarity=0.069 Sum_probs=102.5
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeC
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLG 305 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfid 305 (854)
-++.++|+||||||||.+|+++|... ++.|+.++.+.|.++|.||.|++++.+|..++.. .|+|||||
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~----------~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~--aP~IIfiD 282 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQT----------SATFLRIVGSELIQKYLGDGPRLCRQIFKVAGEN--APSIVFID 282 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHH----------TCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHT--CSEEEEEE
T ss_pred CCCCCceECCCCchHHHHHHHHHHHh----------CCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhc--CCcEEEEe
Confidence 56889999999999999999999884 6799999999999999999999999999999986 79999999
Q ss_pred ccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchhhhhcc-CCCCCCCch
Q 003038 306 DLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLETLWSL-HPLTIPAGS 383 (854)
Q Consensus 306 el~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~-~~v~i~~~s 383 (854)
|++.+ ..+...+.+. ...+....+.+-+.+.....++.+.+||||+.-+ ..||||-|--|| ..|.|+-|+
T Consensus 283 EiDai~~~R~~~~~~~---~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd-----~LDpALlRpGRfD~~I~v~lPd 354 (437)
T 4b4t_I 283 EIDAIGTKRYDSNSGG---EREIQRTMLELLNQLDGFDDRGDVKVIMATNKIE-----TLDPALIRPGRIDRKILFENPD 354 (437)
T ss_dssp EESSSSCCCSCSSCSS---CCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCST-----TCCTTSSCTTTEEEEECCCCCC
T ss_pred hhhhhcccCCCCCCCc---cHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChh-----hcCHHHhcCCceeEEEEcCCcC
Confidence 99999 5543221111 1112223333333332212233699999998765 589999884445 235565555
Q ss_pred HHH
Q 003038 384 LSL 386 (854)
Q Consensus 384 l~~ 386 (854)
...
T Consensus 355 ~~~ 357 (437)
T 4b4t_I 355 LST 357 (437)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 21
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.41 E-value=7.3e-13 Score=150.23 Aligned_cols=141 Identities=12% Similarity=0.077 Sum_probs=103.6
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeC
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLG 305 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfid 305 (854)
-.+.++|+||||||||.+|+++|... ++.|+.++.+.+.++|.|+.+..++.+|..++.. .|+|||||
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~----------~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~--~P~IifiD 281 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATI----------GANFIFSPASGIVDKYIGESARIIREMFAYAKEH--EPCIIFMD 281 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH----------TCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHS--CSEEEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEehhhhccccchHHHHHHHHHHHHHHhc--CCceeeee
Confidence 46889999999999999999999884 6799999999999999999999999999999986 79999999
Q ss_pred ccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchhhhhcc-CCCCCCCch
Q 003038 306 DLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLETLWSL-HPLTIPAGS 383 (854)
Q Consensus 306 el~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~-~~v~i~~~s 383 (854)
|++.+ ..+...... ....+....+.+-+.+....+.+.+.+||||+.-+ ..||||-|.-|| ..|.|+-|+
T Consensus 282 EiDai~~~R~~~~~~---~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~-----~LDpAllRpGRfD~~I~i~lPd 353 (437)
T 4b4t_L 282 EVDAIGGRRFSEGTS---ADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPD-----TLDPALLRPGRLDRKVEIPLPN 353 (437)
T ss_dssp CCCSSSCCCSSSCCS---STTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTT-----SSCTTTTSTTSEEEEECCCCCC
T ss_pred cccccccccccCCCC---cchHHHHHHHHHHHHhhcccCCCCeEEEEecCCch-----hhCHHHhCCCccceeeecCCcC
Confidence 99999 554322111 01112223333333332212233699999998654 579999885456 356666665
Q ss_pred HHH
Q 003038 384 LSL 386 (854)
Q Consensus 384 l~~ 386 (854)
...
T Consensus 354 ~~~ 356 (437)
T 4b4t_L 354 EAG 356 (437)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 22
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.39 E-value=7.3e-13 Score=150.12 Aligned_cols=141 Identities=13% Similarity=0.119 Sum_probs=103.3
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeC
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLG 305 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfid 305 (854)
-++.++|+||||||||.+|+++|... ++.|+.++.+.|.++|.|+.|++++.+|..++.. .|+|||||
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~----------~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~--aP~IifiD 281 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQT----------NATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEK--APTIIFID 281 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH----------TCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHH--CSEEEEEE
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHh----------CCCEEEEehhhhhhcccchHHHHHHHHHHHHHhc--CCeEEeec
Confidence 46889999999999999999999874 6799999999999999999999999999999987 79999999
Q ss_pred ccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchhhhhcc-CCCCCCCch
Q 003038 306 DLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLETLWSL-HPLTIPAGS 383 (854)
Q Consensus 306 el~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~-~~v~i~~~s 383 (854)
|++.+ ..+.....+ ....+....+.+-+.+....+++.+.+||||+.-+ .-||||-|--|| ..|.|+-|+
T Consensus 282 EiDal~~~R~~~~~~---~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~-----~LD~AllRpGRfD~~I~i~lPd 353 (434)
T 4b4t_M 282 ELDAIGTKRFDSEKS---GDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVD-----VLDPALLRSGRLDRKIEFPLPS 353 (434)
T ss_dssp CTHHHHCCCSSGGGG---TTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCC-----CCCTTTCSTTSEEEEEECCCCC
T ss_pred chhhhhhccCCCCCC---CchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCch-----hcCHhHhcCCceeEEEEeCCcC
Confidence 99999 554322111 01112223333333332212334699999998654 579999774456 345566555
Q ss_pred HHH
Q 003038 384 LSL 386 (854)
Q Consensus 384 l~~ 386 (854)
...
T Consensus 354 ~~~ 356 (434)
T 4b4t_M 354 EDS 356 (434)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 23
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.39 E-value=1.3e-12 Score=148.01 Aligned_cols=141 Identities=11% Similarity=0.115 Sum_probs=101.8
Q ss_pred cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEe
Q 003038 225 KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNL 304 (854)
Q Consensus 225 ~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfi 304 (854)
+-.+.++|+||||||||.+|+++|... ++.|+.++.+.|.++|.|+.|++++++|..++.. .|+||||
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~----------~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~--aP~IIfi 308 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRT----------DATFIRVIGSELVQKYVGEGARMVRELFEMARTK--KACIIFF 308 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHH----------TCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHT--CSEEEEE
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhcc----------CCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHhc--CCceEee
Confidence 367899999999999999999999884 6799999999999999999999999999999986 7999999
Q ss_pred Cccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchhhhhcc-CCCCCCCc
Q 003038 305 GDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLETLWSL-HPLTIPAG 382 (854)
Q Consensus 305 del~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~-~~v~i~~~ 382 (854)
||++.+ ..+.....+. ...+....+.+-+.+....+++.+.+||||+.-+ ..||||-|-=|| ..|.|+-|
T Consensus 309 DEiDai~~~R~~~~~~~---~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd-----~LDpALlRpGRFD~~I~i~lP 380 (467)
T 4b4t_H 309 DEIDAVGGARFDDGAGG---DNEVQRTMLELITQLDGFDPRGNIKVMFATNRPN-----TLDPALLRPGRIDRKVEFSLP 380 (467)
T ss_dssp ECCTTTSBCCSSSSCGG---GGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTT-----SBCHHHHSTTTCCEEECCCCC
T ss_pred cccccccccccCcCCCc---cHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcc-----cCChhhhccccccEEEEeCCc
Confidence 999999 6543321110 1111222222222232212233699999998654 579999873344 34555555
Q ss_pred hHH
Q 003038 383 SLS 385 (854)
Q Consensus 383 sl~ 385 (854)
+..
T Consensus 381 d~~ 383 (467)
T 4b4t_H 381 DLE 383 (467)
T ss_dssp CHH
T ss_pred CHH
Confidence 543
No 24
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.33 E-value=5.1e-12 Score=136.58 Aligned_cols=139 Identities=16% Similarity=0.180 Sum_probs=102.4
Q ss_pred hHHHHHHHHHhhcCcccccHHHHHHHHHHHHHh-------hcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHH
Q 003038 605 NSENLTSLCNALEKKVPWQKDTVYDIANTVLKC-------RSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKEL 677 (854)
Q Consensus 605 ~~e~l~~L~~~L~~~V~GQ~~av~~Ia~~v~~~-------rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~L 677 (854)
+...+..+.+.|.+.|+||++++..|...+... +.|+..+ ++...+||+||+|+|||.+|+++
T Consensus 18 ~~~~~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~----------~~~~~vll~G~~GtGKT~la~~l 87 (309)
T 3syl_A 18 EGSGAKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHE----------TPTLHMSFTGNPGTGKTTVALKM 87 (309)
T ss_dssp HHTTHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSS----------CCCCEEEEEECTTSSHHHHHHHH
T ss_pred ccccHHHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCC----------CCCceEEEECCCCCCHHHHHHHH
Confidence 344567788888889999999999998777543 2444432 45568999999999999999999
Q ss_pred HHHHhCC----CCceEEEccccccCcCCCccccccccccCCCCCCchHH-HHHHHHHcCCCEEEEEecCCCC--------
Q 003038 678 ARLVFGS----HNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIE-RFAEAVSNNPHRVFLIEDVEQA-------- 744 (854)
Q Consensus 678 A~~lfg~----~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e-~L~eav~~~p~~ViliDEieka-------- 744 (854)
|+.+... ...++.++++.+. ... . |... .+.+.+.....+||||||||.+
T Consensus 88 a~~l~~~~~~~~~~~~~~~~~~l~-------~~~-----~-----g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~ 150 (309)
T 3syl_A 88 AGLLHRLGYVRKGHLVSVTRDDLV-------GQY-----I-----GHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERD 150 (309)
T ss_dssp HHHHHHTTSSSSCCEEEECGGGTC-------CSS-----T-----TCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---C
T ss_pred HHHHHhcCCcCCCcEEEEcHHHhh-------hhc-----c-----cccHHHHHHHHHhcCCCEEEEEChhhhccCCCccc
Confidence 9988543 2368888876554 111 1 2222 4455555556789999999966
Q ss_pred -CHHHHHHHHHhhhcCeEecCCCceeecCCeEEEEecC
Q 003038 745 -DYCSQKGFKRAIESGRIVTSSGDEVSLGDAIVILSCE 781 (854)
Q Consensus 745 -~~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn 781 (854)
++.+++.|++.|+++. .+.+||+|+|
T Consensus 151 ~~~~~~~~Ll~~l~~~~-----------~~~~~i~~~~ 177 (309)
T 3syl_A 151 YGQEAIEILLQVMENNR-----------DDLVVILAGY 177 (309)
T ss_dssp CTHHHHHHHHHHHHHCT-----------TTCEEEEEEC
T ss_pred ccHHHHHHHHHHHhcCC-----------CCEEEEEeCC
Confidence 9999999999999752 4678899886
No 25
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.32 E-value=1.7e-12 Score=137.59 Aligned_cols=142 Identities=13% Similarity=0.180 Sum_probs=96.3
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..++||+.++..+...+..... ...++||+||+|+|||.+|++|++.+.....+|+.++|+.+.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~----------------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~ 69 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP----------------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALN 69 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT----------------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSC
T ss_pred ccceeCCHHHHHHHHHHHHHhC----------------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCC
Confidence 3578999999998888776532 124789999999999999999999887666789999999875
Q ss_pred CcCCCccccccccccCCC-CC-C-chHHHHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeecCCe
Q 003038 698 STRADSTEDSRNKRSRDE-QS-C-SYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDA 774 (854)
Q Consensus 698 ~~~~~s~e~~~~~rl~~~-~g-~-g~~e~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~~~a 774 (854)
.......+.+. .+ + |......+.+......+||||||+++++++|+.|+++|++|.+....+....-.+.
T Consensus 70 -------~~~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~ 142 (265)
T 2bjv_A 70 -------ENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNV 142 (265)
T ss_dssp -------HHHHHHHHHCCC---------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCC
T ss_pred -------hhHHHHHhcCCcccccccccccccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCe
Confidence 22111111110 00 1 11110111233345689999999999999999999999999987654444445678
Q ss_pred EEEEecCC
Q 003038 775 IVILSCES 782 (854)
Q Consensus 775 IiIlTsn~ 782 (854)
.||+|||.
T Consensus 143 ~iI~atn~ 150 (265)
T 2bjv_A 143 RLVCATNA 150 (265)
T ss_dssp EEEEEESS
T ss_pred EEEEecCc
Confidence 89999984
No 26
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.31 E-value=4.8e-12 Score=143.30 Aligned_cols=135 Identities=14% Similarity=0.162 Sum_probs=99.7
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeC
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLG 305 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfid 305 (854)
-++.++|+||||||||.+|+++|... ++.|+.++.+.+.++|.|+.|.+++++|..++.. .|+|||||
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~----------~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~--aP~IifiD 272 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANST----------KAAFIRVNGSEFVHKYLGEGPRMVRDVFRLAREN--APSIIFID 272 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHH----------TCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHT--CSEEEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEecchhhccccchhHHHHHHHHHHHHHc--CCCeeech
Confidence 46679999999999999999999874 6799999999999999999999999999999986 79999999
Q ss_pred ccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchhhhhccC-CCCCC
Q 003038 306 DLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLETLWSLH-PLTIP 380 (854)
Q Consensus 306 el~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~~-~v~i~ 380 (854)
|++.+ ..+.....+. ..........+-+.+....+.+.+.+||||+..+ .-||||-|--||. .|.+|
T Consensus 273 EiD~i~~~R~~~~~~~---~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~-----~LD~AllRpGRfd~~I~~p 341 (428)
T 4b4t_K 273 EVDSIATKRFDAQTGS---DREVQRILIELLTQMDGFDQSTNVKVIMATNRAD-----TLDPALLRPGRLDRKIEFP 341 (428)
T ss_dssp CTHHHHCSCSSSCSCC---CCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSS-----SCCHHHHSSSSEEEEEECC
T ss_pred hhhhhhccccCCCCCC---ChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChh-----hcChhhhcCCcceEEEEcC
Confidence 99999 5543221110 1112234444444442211223599999998654 5799998854553 45554
No 27
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.23 E-value=2.2e-11 Score=131.61 Aligned_cols=137 Identities=10% Similarity=0.046 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCc
Q 003038 624 KDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADS 703 (854)
Q Consensus 624 ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s 703 (854)
+..+..++..+.+....+... ++...+||+||+|||||.+|++||+.+ ..+|++++++++.
T Consensus 13 ~~~~~~~~~~~~k~~l~~~~~----------~~p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~~~l~------ 73 (293)
T 3t15_A 13 PAFMDKLVVHITKNFLKLPNI----------KVPLILGIWGGKGQGKSFQCELVFRKM---GINPIMMSAGELE------ 73 (293)
T ss_dssp HHHHHHHHHHHHHTTSCCTTC----------CCCSEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEHHHHH------
T ss_pred HHHHHHHHHHHHHHHHhcCCC----------CCCeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeHHHhh------
Confidence 445556666666654433221 333467889999999999999999998 4689999988665
Q ss_pred cccccccccCCCCCCchHHHHHHH----HHcCCCEEEEEecCCCCCH-------------HHHHHHHHhhhcCeEecCC-
Q 003038 704 TEDSRNKRSRDEQSCSYIERFAEA----VSNNPHRVFLIEDVEQADY-------------CSQKGFKRAIESGRIVTSS- 765 (854)
Q Consensus 704 ~e~~~~~rl~~~~g~g~~e~L~ea----v~~~p~~ViliDEieka~~-------------~v~~~Ll~~le~G~l~d~~- 765 (854)
... .+ ...++...+.+. ++..+.+||||||||++.+ .+++.|++.|+........
T Consensus 74 -~~~-----~g-~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~ 146 (293)
T 3t15_A 74 -SGN-----AG-EPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 146 (293)
T ss_dssp -CC---------HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC------
T ss_pred -hcc-----Cc-hhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhcccccccccc
Confidence 111 00 000122222222 2566789999999998876 4779999999976654322
Q ss_pred -CceeecCCeEEEEecCCCCCC
Q 003038 766 -GDEVSLGDAIVILSCESFSSR 786 (854)
Q Consensus 766 -G~~v~~~~aIiIlTsn~f~~~ 786 (854)
+.....++.+||+|||..+..
T Consensus 147 ~~~~~~~~~v~vI~ttN~~~~l 168 (293)
T 3t15_A 147 MYNKQENARVPIIVTGNDFSTL 168 (293)
T ss_dssp -----CCCCCCEEEECSSCCC-
T ss_pred ccccccCCCcEEEEecCCcccC
Confidence 245667899999999965443
No 28
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.22 E-value=4e-11 Score=131.25 Aligned_cols=135 Identities=12% Similarity=0.134 Sum_probs=97.6
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeCc
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLGD 306 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfide 306 (854)
.++++|+||||+|||.+++++|... +..++.++.+.+.+.+.|+.+..++.++..++.. .+.||||||
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~----------~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~--~~~vl~iDE 118 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA----------NSTFFSVSSSDLVSKWMGESEKLVKQLFAMAREN--KPSIIFIDQ 118 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH----------TCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHHHT--SSEEEEEEC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH----------CCCEEEEchHHHhhcccchHHHHHHHHHHHHHhc--CCeEEEech
Confidence 4679999999999999999999874 5689999999999999999999999999999975 689999999
Q ss_pred cccc-cccccccccccccchhhhHHHHHHHhhccc-CCCCceEEEEEecCHHHHHHhhccCCchhhhhcc-CCCCCCCch
Q 003038 307 LEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG-IGENARFWLMGIATFQSYMRCKSGHPSLETLWSL-HPLTIPAGS 383 (854)
Q Consensus 307 l~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~-~~v~i~~~s 383 (854)
|+.+ ....... ....+.....+-..+.. ....+.+.+||+|+... ..+|+|.+ || ..+.|+.|+
T Consensus 119 id~l~~~~~~~~------~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~-----~ld~al~~--Rf~~~i~~~~p~ 185 (322)
T 3eie_A 119 VDALTGTRGEGE------SEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW-----QLDSAIRR--RFERRIYIPLPD 185 (322)
T ss_dssp GGGGSCC------------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGG-----GSCHHHHH--HCCEEEECCCCC
T ss_pred hhhhhccCCCCc------chHHHHHHHHHHHHhccccccCCceEEEEecCChh-----hCCHHHHc--ccCeEEEeCCCC
Confidence 9999 5432210 01122333444444422 11223699999998543 46899999 77 345566565
Q ss_pred HHH
Q 003038 384 LSL 386 (854)
Q Consensus 384 l~~ 386 (854)
...
T Consensus 186 ~~~ 188 (322)
T 3eie_A 186 LAA 188 (322)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 29
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.21 E-value=9.2e-12 Score=150.60 Aligned_cols=141 Identities=14% Similarity=0.141 Sum_probs=96.6
Q ss_pred cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEe
Q 003038 225 KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNL 304 (854)
Q Consensus 225 ~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfi 304 (854)
+..+.++|+||||+|||.+|+++|.. .+..|++++.+.+.++|.||.|+.++++|+.+++. .|+||||
T Consensus 509 ~~~~gvLl~GPPGtGKT~lAkaiA~e----------~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~--~P~Iifi 576 (806)
T 3cf2_A 509 TPSKGVLFYGPPGCGKTLLAKAIANE----------CQANFISIKGPELLTMWFGESEANVREIFDKARQA--APCVLFF 576 (806)
T ss_dssp CCCSCCEEESSTTSSHHHHHHHHHHT----------TTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTT--CSEEEEC
T ss_pred CCCceEEEecCCCCCchHHHHHHHHH----------hCCceEEeccchhhccccchHHHHHHHHHHHHHHc--CCceeec
Confidence 35567999999999999999999976 47799999999999999999999999999999986 7999999
Q ss_pred Cccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchhhhhcc-CCCCCCCc
Q 003038 305 GDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLETLWSL-HPLTIPAG 382 (854)
Q Consensus 305 del~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~-~~v~i~~~ 382 (854)
|||+.+ ..+.....+ .....+..+.++-..+..-.++..+.+||||+..+ ..||||-|--|| ..|.|+-|
T Consensus 577 DEiDsl~~~R~~~~~~---~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~-----~lD~AllRpgRfd~~i~v~lP 648 (806)
T 3cf2_A 577 DELDSIAKARGGNIGD---GGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD-----IIDPAILRPGRLDQLIYIPLP 648 (806)
T ss_dssp SCGGGCC-----------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSS-----SSCHHHHSTTTSCCEEEC---
T ss_pred hhhhHHhhccCCCCCC---CchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCch-----hCCHhHcCCCcceEEEEECCc
Confidence 999999 654321000 01122345555544452212223699999998654 579999885566 34556655
Q ss_pred hHH
Q 003038 383 SLS 385 (854)
Q Consensus 383 sl~ 385 (854)
+..
T Consensus 649 d~~ 651 (806)
T 3cf2_A 649 DEK 651 (806)
T ss_dssp --C
T ss_pred CHH
Confidence 533
No 30
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.18 E-value=2.1e-11 Score=132.60 Aligned_cols=142 Identities=11% Similarity=0.128 Sum_probs=97.6
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..++|++.++..+...+.+.. +...++||+||+|+|||.+|++|+........+|+.++|+.+.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~ 65 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----------------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALN 65 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----------------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCC
T ss_pred CCcEECCHHHHHHHHHHHHHh----------------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCC
Confidence 458999999999988887752 1234789999999999999999999876667889999998765
Q ss_pred CcCCCccccccccccCCC-CC-C-chHHHHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeecCCe
Q 003038 698 STRADSTEDSRNKRSRDE-QS-C-SYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDA 774 (854)
Q Consensus 698 ~~~~~s~e~~~~~rl~~~-~g-~-g~~e~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~~~a 774 (854)
+....+.+.+. .| + |........+......+||||||+.+++++|..|+++|+++.+..-.+....-.++
T Consensus 66 -------~~l~~~~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~ 138 (304)
T 1ojl_A 66 -------ESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDV 138 (304)
T ss_dssp -------HHHHHHHHTCCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCC
T ss_pred -------hHHHHHHhcCccccccCchhhhhcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCe
Confidence 21111111110 00 0 11000011112223579999999999999999999999999887544433334577
Q ss_pred EEEEecCC
Q 003038 775 IVILSCES 782 (854)
Q Consensus 775 IiIlTsn~ 782 (854)
.||++||.
T Consensus 139 riI~atn~ 146 (304)
T 1ojl_A 139 RLIAATHR 146 (304)
T ss_dssp EEEEEESS
T ss_pred EEEEecCc
Confidence 89998884
No 31
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.18 E-value=5.2e-11 Score=133.76 Aligned_cols=151 Identities=11% Similarity=0.065 Sum_probs=98.9
Q ss_pred cHHHHHHHHHHhh------------ccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccch
Q 003038 211 RNEDVMYVIENLM------------SKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNR 278 (854)
Q Consensus 211 r~~ei~~v~~~L~------------r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~r 278 (854)
.++.++.+.+.+. +...++++|+||||||||++|+++|.+ .+..|+.++.+.+...|.
T Consensus 120 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~----------~~~~~~~v~~~~l~~~~~ 189 (389)
T 3vfd_A 120 QDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE----------SNATFFNISAASLTSKYV 189 (389)
T ss_dssp CHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH----------TTCEEEEECSCCC-----
T ss_pred HHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh----------hcCcEEEeeHHHhhcccc
Confidence 6666777777662 234589999999999999999999987 367999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhccc--CCCCceEEEEEecCH
Q 003038 279 VEVEQRVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG--IGENARFWLMGIATF 355 (854)
Q Consensus 279 ge~E~rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~--~~g~g~l~lIgatT~ 355 (854)
|+++..++.++..++.. .+.||||||||.+ .....+. ..........+-..+.. ....+++.+||+|+.
T Consensus 190 g~~~~~~~~~~~~a~~~--~~~il~iDEid~l~~~~~~~~------~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~ 261 (389)
T 3vfd_A 190 GEGEKLVRALFAVAREL--QPSIIFIDQVDSLLCERREGE------HDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNR 261 (389)
T ss_dssp --CHHHHHHHHHHHHHS--SSEEEEEETGGGGC--------------CTHHHHHHHHHHHHHHHC-----CEEEEEEESC
T ss_pred chHHHHHHHHHHHHHhc--CCeEEEEECchhhcccCCCcc------chHHHHHHHHHHHHhhcccccCCCCEEEEEecCC
Confidence 99999999999999875 6889999999999 5432210 00111222233333311 111236999999986
Q ss_pred HHHHHhhccCCchhhhhccC-CCCCCCchHHH
Q 003038 356 QSYMRCKSGHPSLETLWSLH-PLTIPAGSLSL 386 (854)
Q Consensus 356 ~ey~k~~~~~pale~~~~~~-~v~i~~~sl~~ 386 (854)
.+ ..+++|.+ ||+ .|.|+.++...
T Consensus 262 ~~-----~l~~~l~~--R~~~~i~i~~p~~~~ 286 (389)
T 3vfd_A 262 PQ-----ELDEAVLR--RFIKRVYVSLPNEET 286 (389)
T ss_dssp GG-----GCCHHHHT--TCCEEEECCCCCHHH
T ss_pred ch-----hcCHHHHc--CcceEEEcCCcCHHH
Confidence 43 56899999 775 57777766554
No 32
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.18 E-value=7.2e-11 Score=129.40 Aligned_cols=136 Identities=13% Similarity=0.128 Sum_probs=98.7
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeCc
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLGD 306 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfide 306 (854)
.++++|+||||+|||++++++|..+ .+..++.++...+...+.|+.++.++.++..++.. .++||||||
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~---------~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~--~~~vl~iDE 113 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA---------NNSTFFSISSSDLVSKWLGESEKLVKNLFQLAREN--KPSIIFIDE 113 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT---------TSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHHT--SSEEEEEET
T ss_pred CceEEEECCCCccHHHHHHHHHHHc---------CCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhc--CCcEEEeec
Confidence 4689999999999999999999874 35689999999999889999999999999999875 689999999
Q ss_pred cccc-cccccccccccccchhhhHHHHHHHhhccc-CCCCceEEEEEecCHHHHHHhhccCCchhhhhcc-CCCCCCCch
Q 003038 307 LEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG-IGENARFWLMGIATFQSYMRCKSGHPSLETLWSL-HPLTIPAGS 383 (854)
Q Consensus 307 l~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~-~~v~i~~~s 383 (854)
++.+ ....... ..........+-..+.. ....+.+.+||+|+... ..+|+|.| || ..+.|+.|+
T Consensus 114 id~l~~~~~~~~------~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~-----~ld~al~r--Rf~~~i~i~~P~ 180 (322)
T 1xwi_A 114 IDSLCGSRSENE------SEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW-----VLDSAIRR--RFEKRIYIPLPE 180 (322)
T ss_dssp TTGGGCCSSSCC------TTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTT-----TSCHHHHH--TCCEEEECCCCC
T ss_pred HHHhcccccccc------chHHHHHHHHHHHHHhcccccCCCEEEEEecCCcc-----cCCHHHHh--hcCeEEEeCCcC
Confidence 9999 5443211 01112233333333321 11123699999998653 46899999 77 456666665
Q ss_pred HHH
Q 003038 384 LSL 386 (854)
Q Consensus 384 l~~ 386 (854)
...
T Consensus 181 ~~~ 183 (322)
T 1xwi_A 181 PHA 183 (322)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 33
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.17 E-value=4.3e-11 Score=115.51 Aligned_cols=114 Identities=7% Similarity=0.029 Sum_probs=83.6
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
+.++|++.++..+...+.+... ...++||+||+|+|||.+|++|++.......+|+ ++++.+.
T Consensus 1 ~~iiG~s~~~~~~~~~~~~~a~----------------~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~ 63 (145)
T 3n70_A 1 VELIGRSEWINQYRRRLQQLSE----------------TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPD 63 (145)
T ss_dssp ---CCSSHHHHHHHHHHHHHTT----------------CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTT
T ss_pred CCceeCCHHHHHHHHHHHHHhC----------------CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCC
Confidence 3579999999999988877521 2347899999999999999999998766677899 9998665
Q ss_pred CcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeecCCeEEE
Q 003038 698 STRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDAIVI 777 (854)
Q Consensus 698 ~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIiI 777 (854)
+.. . +.+.+......++||||||.+++++|..|+++|+.. -.+..||
T Consensus 64 -------~~~-----------~----~~~~~~~a~~g~l~ldei~~l~~~~q~~Ll~~l~~~-----------~~~~~~I 110 (145)
T 3n70_A 64 -------NAP-----------Q----LNDFIALAQGGTLVLSHPEHLTREQQYHLVQLQSQE-----------HRPFRLI 110 (145)
T ss_dssp -------TSS-----------C----HHHHHHHHTTSCEEEECGGGSCHHHHHHHHHHHHSS-----------SCSSCEE
T ss_pred -------cch-----------h----hhcHHHHcCCcEEEEcChHHCCHHHHHHHHHHHhhc-----------CCCEEEE
Confidence 110 0 112222224579999999999999999999999431 1244588
Q ss_pred EecC
Q 003038 778 LSCE 781 (854)
Q Consensus 778 lTsn 781 (854)
+|||
T Consensus 111 ~~t~ 114 (145)
T 3n70_A 111 GIGD 114 (145)
T ss_dssp EEES
T ss_pred EECC
Confidence 8886
No 34
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.15 E-value=6.4e-11 Score=136.96 Aligned_cols=144 Identities=13% Similarity=0.125 Sum_probs=99.7
Q ss_pred HHHHHHHHHhhcCcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCC
Q 003038 606 SENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSH 685 (854)
Q Consensus 606 ~e~l~~L~~~L~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~ 685 (854)
.+.+..|...|.+.|+||++++..+..++.. .+.+||+||||+|||.+|++||..+ +..
T Consensus 10 ~~~~~~l~~~l~~~ivGq~~~i~~l~~al~~--------------------~~~VLL~GpPGtGKT~LAraLa~~l-~~~ 68 (500)
T 3nbx_X 10 AERISRLSSSLEKGLYERSHAIRLCLLAALS--------------------GESVFLLGPPGIAKSLIARRLKFAF-QNA 68 (500)
T ss_dssp HHHHHHHHHHHHTTCSSCHHHHHHHHHHHHH--------------------TCEEEEECCSSSSHHHHHHHGGGGB-SSC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--------------------CCeeEeecCchHHHHHHHHHHHHHH-hhh
Confidence 4677899999999999999999887766653 2378999999999999999999977 444
Q ss_pred CceEEEccccccCcCCCccccccccccCCC-CCCchH-HHHHHHHHcC---CCEEEEEecCCCCCHHHHHHHHHhhhcCe
Q 003038 686 NNFVSIALSSFSSTRADSTEDSRNKRSRDE-QSCSYI-ERFAEAVSNN---PHRVFLIEDVEQADYCSQKGFKRAIESGR 760 (854)
Q Consensus 686 ~~~i~id~s~~~~~~~~s~e~~~~~rl~~~-~g~g~~-e~L~eav~~~---p~~ViliDEieka~~~v~~~Ll~~le~G~ 760 (854)
..|..+.+...+ . ..+.+. .++... ....+..... ..+|+|||||+++++.+|+.|+++|++|.
T Consensus 69 ~~f~~~~~~~~t-~----------~dL~G~~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~ 137 (500)
T 3nbx_X 69 RAFEYLMTRFST-P----------EEVFGPLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQ 137 (500)
T ss_dssp CEEEEECCTTCC-H----------HHHHCCBC----------CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSE
T ss_pred hHHHHHHHhcCC-H----------HHhcCcccHHHHhhchhHHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHh
Confidence 556666554211 0 000000 000000 0000000011 14699999999999999999999999999
Q ss_pred EecCCCceeecCCeEEEEecCC
Q 003038 761 IVTSSGDEVSLGDAIVILSCES 782 (854)
Q Consensus 761 l~d~~G~~v~~~~aIiIlTsn~ 782 (854)
++. .|....+..-++|++||.
T Consensus 138 v~i-~G~~~~~~~~~iI~ATN~ 158 (500)
T 3nbx_X 138 FRN-GAHVEKIPMRLLVAASNE 158 (500)
T ss_dssp EEC-SSSEEECCCCEEEEEESS
T ss_pred ccC-CCCcCCcchhhhhhcccc
Confidence 986 566777777778999983
No 35
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.14 E-value=1e-10 Score=129.90 Aligned_cols=136 Identities=12% Similarity=0.131 Sum_probs=93.8
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeC
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLG 305 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfid 305 (854)
..++++|+||||||||++|+++|..+ +..++.++...+...+.|+.+..++.++..++.. .++|||||
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~----------~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~--~~~vl~iD 150 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEA----------NSTFFSVSSSDLVSKWMGESEKLVKQLFAMAREN--KPSIIFID 150 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHH----------TCEEEEEEHHHHHSCC---CHHHHHHHHHHHHHT--SSEEEEEE
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh----------CCCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHc--CCeEEEEe
Confidence 35689999999999999999999885 5689999999998889999999999999999875 68999999
Q ss_pred ccccc-cccccccccccccchhhhHHHHHHHhhccc-CCCCceEEEEEecCHHHHHHhhccCCchhhhhcc-CCCCCCCc
Q 003038 306 DLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG-IGENARFWLMGIATFQSYMRCKSGHPSLETLWSL-HPLTIPAG 382 (854)
Q Consensus 306 el~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~-~~v~i~~~ 382 (854)
|++.+ ..+.... ..........+-..+.. ......+.+||+|+..+ ..+|+|.| || ..+.|+.|
T Consensus 151 Eid~l~~~r~~~~------~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~-----~ld~al~r--Rf~~~i~i~~P 217 (355)
T 2qp9_X 151 QVDALTGTRGEGE------SEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW-----QLDSAIRR--RFERRIYIPLP 217 (355)
T ss_dssp CGGGGTC------------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGG-----GSCHHHHH--TCCEEEECCCC
T ss_pred chHhhcccCCCCc------chHHHHHHHHHHHHhhcccccCCCeEEEeecCCcc-----cCCHHHHc--ccCEEEEeCCc
Confidence 99999 5432210 01112233333333321 11122599999998654 46899998 77 45566666
Q ss_pred hHHH
Q 003038 383 SLSL 386 (854)
Q Consensus 383 sl~~ 386 (854)
+...
T Consensus 218 ~~~~ 221 (355)
T 2qp9_X 218 DLAA 221 (355)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 6544
No 36
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.12 E-value=1.9e-10 Score=130.59 Aligned_cols=80 Identities=18% Similarity=0.253 Sum_probs=59.9
Q ss_pred HHHHHhhcCcccccHHHHHHHHHHHHHh--hcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCc
Q 003038 610 TSLCNALEKKVPWQKDTVYDIANTVLKC--RSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNN 687 (854)
Q Consensus 610 ~~L~~~L~~~V~GQ~~av~~Ia~~v~~~--rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~ 687 (854)
+.+.+.|.+.|+||++++..|..++... |.++...-+ ...+...+||+||+|+|||++|++||+.+ ...
T Consensus 7 ~~i~~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~------~~~~~~~iLl~GppGtGKT~lar~lA~~l---~~~ 77 (444)
T 1g41_A 7 REIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLR------HEVTPKNILMIGPTGVGKTEIARRLAKLA---NAP 77 (444)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTT------TTCCCCCEEEECCTTSSHHHHHHHHHHHT---TCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhccccccc------cccCCceEEEEcCCCCCHHHHHHHHHHHc---CCC
Confidence 4688889999999999999999998543 222211100 01234579999999999999999999998 458
Q ss_pred eEEEccccccC
Q 003038 688 FVSIALSSFSS 698 (854)
Q Consensus 688 ~i~id~s~~~~ 698 (854)
|+.++++.+..
T Consensus 78 ~~~v~~~~~~~ 88 (444)
T 1g41_A 78 FIKVEATKFTE 88 (444)
T ss_dssp EEEEEGGGGC-
T ss_pred ceeecchhhcc
Confidence 99999887653
No 37
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.12 E-value=3.5e-10 Score=120.79 Aligned_cols=153 Identities=10% Similarity=0.076 Sum_probs=106.7
Q ss_pred cHHHHHHHHHHhhc-------------cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccc
Q 003038 211 RNEDVMYVIENLMS-------------KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMN 277 (854)
Q Consensus 211 r~~ei~~v~~~L~r-------------~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~ 277 (854)
.++.++++.+.+.. +..++++|+||||+|||++++++|..+ +..++.++...+...+
T Consensus 22 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~----------~~~~~~v~~~~~~~~~ 91 (285)
T 3h4m_A 22 LEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET----------NATFIRVVGSELVKKF 91 (285)
T ss_dssp CHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT----------TCEEEEEEGGGGCCCS
T ss_pred HHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEehHHHHHhc
Confidence 66666766666543 467789999999999999999999874 5689999999998889
Q ss_pred hHHHHHHHHHHHHHHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcc---cCCCCceEEEEEec
Q 003038 278 RVEVEQRVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVC---GIGENARFWLMGIA 353 (854)
Q Consensus 278 rge~E~rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~---~~~g~g~l~lIgat 353 (854)
.|+.+..+..++..++.. .+.||||||++.+ ........+. .......+..++. ....++.+.+|++|
T Consensus 92 ~~~~~~~~~~~~~~~~~~--~~~vl~iDEid~l~~~~~~~~~~~------~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt 163 (285)
T 3h4m_A 92 IGEGASLVKDIFKLAKEK--APSIIFIDEIDAIAAKRTDALTGG------DREVQRTLMQLLAEMDGFDARGDVKIIGAT 163 (285)
T ss_dssp TTHHHHHHHHHHHHHHHT--CSEEEEEETTHHHHBCCSSSCCGG------GGHHHHHHHHHHHHHHTTCSSSSEEEEEEC
T ss_pred cchHHHHHHHHHHHHHHc--CCeEEEEECHHHhcccCccccCCc------cHHHHHHHHHHHHHhhCCCCCCCEEEEEeC
Confidence 999999999999999875 6899999999999 5433211000 0012223334442 11122369999999
Q ss_pred CHHHHHHhhccCCchhhhhcc-CCCCCCCchHHH
Q 003038 354 TFQSYMRCKSGHPSLETLWSL-HPLTIPAGSLSL 386 (854)
Q Consensus 354 T~~ey~k~~~~~pale~~~~~-~~v~i~~~sl~~ 386 (854)
+..+ ..+|++.+.-|| ..+.++.++...
T Consensus 164 n~~~-----~l~~~l~~~~Rf~~~i~~~~p~~~~ 192 (285)
T 3h4m_A 164 NRPD-----ILDPAILRPGRFDRIIEVPAPDEKG 192 (285)
T ss_dssp SCGG-----GBCHHHHSTTSEEEEEECCCCCHHH
T ss_pred CCch-----hcCHHHcCCCcCCeEEEECCCCHHH
Confidence 8653 357888763344 256666666544
No 38
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.10 E-value=2.6e-10 Score=123.21 Aligned_cols=142 Identities=9% Similarity=0.060 Sum_probs=104.0
Q ss_pred cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEe
Q 003038 225 KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNL 304 (854)
Q Consensus 225 ~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfi 304 (854)
+...|++|+||||||||++++.+|..+.... .+.+..++.++...+...+.|+.+.++.+++..+. +.||||
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~---~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~-----~~vl~i 136 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLG---YVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAM-----GGVLFI 136 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHTT---SSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHHT-----TSEEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcC---CcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhcC-----CCEEEE
Confidence 3455799999999999999999999886532 23456899999999988888988888888877653 459999
Q ss_pred Cccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchhhhhcc-CCCCCCCc
Q 003038 305 GDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLETLWSL-HPLTIPAG 382 (854)
Q Consensus 305 del~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~-~~v~i~~~ 382 (854)
||++.+ ..+.... +. ......+-+++..... .+.+|++|+...+..++..+|+|.+ || +.|.++.+
T Consensus 137 DEid~l~~~~~~~~------~~--~~~~~~Ll~~l~~~~~--~~~~i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~ 204 (309)
T 3syl_A 137 DEAYYLYRPDNERD------YG--QEAIEILLQVMENNRD--DLVVILAGYADRMENFFQSNPGFRS--RIAHHIEFPDY 204 (309)
T ss_dssp ETGGGSCCCC---C------CT--HHHHHHHHHHHHHCTT--TCEEEEEECHHHHHHHHHHSTTHHH--HEEEEEEECCC
T ss_pred EChhhhccCCCccc------cc--HHHHHHHHHHHhcCCC--CEEEEEeCChHHHHHHHhhCHHHHH--hCCeEEEcCCc
Confidence 999999 5432110 00 0233344444432222 5999999999888888888999999 77 88888887
Q ss_pred hHHH
Q 003038 383 SLSL 386 (854)
Q Consensus 383 sl~~ 386 (854)
+...
T Consensus 205 ~~~~ 208 (309)
T 3syl_A 205 SDEE 208 (309)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7544
No 39
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.10 E-value=4.5e-11 Score=140.10 Aligned_cols=147 Identities=13% Similarity=0.231 Sum_probs=93.4
Q ss_pred HhhcCcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcc
Q 003038 614 NALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIAL 693 (854)
Q Consensus 614 ~~L~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~ 693 (854)
+.|.+.++|++++...+...+......... +...++|+||+|+|||++|++||..+ ...++++++
T Consensus 77 ~~l~~di~G~~~vk~~i~~~~~l~~~~~~~------------~g~~vll~Gp~GtGKTtlar~ia~~l---~~~~~~i~~ 141 (543)
T 3m6a_A 77 RLLDEEHHGLEKVKERILEYLAVQKLTKSL------------KGPILCLAGPPGVGKTSLAKSIAKSL---GRKFVRISL 141 (543)
T ss_dssp GTHHHHCSSCHHHHHHHHHHHHHHHHSSSC------------CSCEEEEESSSSSSHHHHHHHHHHHH---TCEEEEECC
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhcccC------------CCCEEEEECCCCCCHHHHHHHHHHhc---CCCeEEEEe
Confidence 445577999999999998777654432221 23489999999999999999999998 457889988
Q ss_pred ccccCcCCCccccccccccCCCCCC-chHH-HHHHHHHcC--CCEEEEEecCCCCCHH----HHHHHHHhhhcCe---Ee
Q 003038 694 SSFSSTRADSTEDSRNKRSRDEQSC-SYIE-RFAEAVSNN--PHRVFLIEDVEQADYC----SQKGFKRAIESGR---IV 762 (854)
Q Consensus 694 s~~~~~~~~s~e~~~~~rl~~~~g~-g~~e-~L~eav~~~--p~~ViliDEieka~~~----v~~~Ll~~le~G~---l~ 762 (854)
+.+.. ....... ...| |+.. .+...+... ...|+|||||++++++ .++.|+++|+++. +.
T Consensus 142 ~~~~~-------~~~~~g~--~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~ 212 (543)
T 3m6a_A 142 GGVRD-------ESEIRGH--RRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFS 212 (543)
T ss_dssp CC-----------------------------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCC
T ss_pred cccch-------hhhhhhH--HHHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceee
Confidence 76541 1110000 0011 2221 122222222 3349999999999988 5699999998764 44
Q ss_pred cC-CCceeecCCeEEEEecCCCC
Q 003038 763 TS-SGDEVSLGDAIVILSCESFS 784 (854)
Q Consensus 763 d~-~G~~v~~~~aIiIlTsn~f~ 784 (854)
+. .+..+++++++||+|+|..+
T Consensus 213 ~~~~~~~~~~~~v~iI~ttN~~~ 235 (543)
T 3m6a_A 213 DHYIEETFDLSKVLFIATANNLA 235 (543)
T ss_dssp CSSSCCCCBCSSCEEEEECSSTT
T ss_pred cccCCeeecccceEEEeccCccc
Confidence 42 35778899999999999754
No 40
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.10 E-value=3.7e-10 Score=125.40 Aligned_cols=151 Identities=15% Similarity=0.100 Sum_probs=104.5
Q ss_pred cHHHHHHHHHHhh------------ccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccch
Q 003038 211 RNEDVMYVIENLM------------SKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNR 278 (854)
Q Consensus 211 r~~ei~~v~~~L~------------r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~r 278 (854)
.++.++.+.+.+. .+..++++|+||||||||++++++|..+ +..++.++.+.+...+.
T Consensus 89 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~----------~~~~~~i~~~~l~~~~~ 158 (357)
T 3d8b_A 89 VEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS----------GATFFSISASSLTSKWV 158 (357)
T ss_dssp CHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT----------TCEEEEEEGGGGCCSST
T ss_pred hHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc----------CCeEEEEehHHhhcccc
Confidence 5566666666553 2457789999999999999999999873 56899999999998899
Q ss_pred HHHHHHHHHHHHHHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhccc--CCCCceEEEEEecCH
Q 003038 279 VEVEQRVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG--IGENARFWLMGIATF 355 (854)
Q Consensus 279 ge~E~rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~--~~g~g~l~lIgatT~ 355 (854)
|+.+..++.++..++.. .+.||||||++.+ .....+.. .........+-..+.. ....+.+.+||+|+.
T Consensus 159 g~~~~~~~~~~~~a~~~--~~~vl~iDEid~l~~~~~~~~~------~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~ 230 (357)
T 3d8b_A 159 GEGEKMVRALFAVARCQ--QPAVIFIDEIDSLLSQRGDGEH------ESSRRIKTEFLVQLDGATTSSEDRILVVGATNR 230 (357)
T ss_dssp THHHHHHHHHHHHHHHT--CSEEEEEETHHHHTBC------------CHHHHHHHHHHHHHHC----CCCCEEEEEEESC
T ss_pred chHHHHHHHHHHHHHhc--CCeEEEEeCchhhhccCCCCcc------hHHHHHHHHHHHHHhcccccCCCCEEEEEecCC
Confidence 99999999999998865 6899999999999 54322100 0111222233333321 111236999999987
Q ss_pred HHHHHhhccCCchhhhhccC-CCCCCCchHHH
Q 003038 356 QSYMRCKSGHPSLETLWSLH-PLTIPAGSLSL 386 (854)
Q Consensus 356 ~ey~k~~~~~pale~~~~~~-~v~i~~~sl~~ 386 (854)
.. ..+++|.+ ||. .+.|+.++...
T Consensus 231 ~~-----~l~~~l~~--Rf~~~i~i~~p~~~~ 255 (357)
T 3d8b_A 231 PQ-----EIDEAARR--RLVKRLYIPLPEASA 255 (357)
T ss_dssp GG-----GBCHHHHT--TCCEEEECCCCCHHH
T ss_pred hh-----hCCHHHHh--hCceEEEeCCcCHHH
Confidence 43 46889988 775 45666665544
No 41
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.08 E-value=5.6e-10 Score=122.30 Aligned_cols=127 Identities=12% Similarity=0.122 Sum_probs=94.1
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..++||+.++..+...+...+.. .++...+||+||+|+|||.+|++||+.+ ...|+.++++.+.
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~-------------~~~~~~vll~G~~GtGKT~la~~ia~~~---~~~~~~~~~~~~~ 92 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKR-------------NECLDHILFSGPAGLGKTTLANIISYEM---SANIKTTAAPMIE 92 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHT-------------TSCCCCEEEECSTTSSHHHHHHHHHHHT---TCCEEEEEGGGCC
T ss_pred HHhCChHHHHHHHHHHHHHHHhc-------------CCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEecchhcc
Confidence 35899999999999998876431 1334578999999999999999999987 3468888776443
Q ss_pred CcCCCccccccccccCCCCCCchHHHHHHHHHc-CCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecC-------CCcee
Q 003038 698 STRADSTEDSRNKRSRDEQSCSYIERFAEAVSN-NPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTS-------SGDEV 769 (854)
Q Consensus 698 ~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~-~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~-------~G~~v 769 (854)
. ...+...+.. ....|||||||+.+++.+|+.|+++|+++.+.-- ....+
T Consensus 93 -------~---------------~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~ 150 (338)
T 3pfi_A 93 -------K---------------SGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKI 150 (338)
T ss_dssp -------S---------------HHHHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCC
T ss_pred -------c---------------hhHHHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceec
Confidence 0 1123344433 5678999999999999999999999999875421 22334
Q ss_pred ecCCeEEEEecCC
Q 003038 770 SLGDAIVILSCES 782 (854)
Q Consensus 770 ~~~~aIiIlTsn~ 782 (854)
++.+.+||++||.
T Consensus 151 ~~~~~~~i~atn~ 163 (338)
T 3pfi_A 151 DLPKFTLIGATTR 163 (338)
T ss_dssp CCCCCEEEEEESC
T ss_pred CCCCeEEEEeCCC
Confidence 5567899999986
No 42
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.08 E-value=5.2e-11 Score=114.74 Aligned_cols=110 Identities=18% Similarity=0.172 Sum_probs=81.6
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccC
Q 003038 619 KVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSS 698 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~ 698 (854)
.++|+++++..+...+.+... ...++||+||+|+|||.+|++|+.... +|+.++++.+.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~----------------~~~~vll~G~~GtGKt~lA~~i~~~~~----~~~~~~~~~~~- 63 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK----------------RTSPVFLTGEAGSPFETVARYFHKNGT----PWVSPARVEYL- 63 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT----------------CSSCEEEEEETTCCHHHHHGGGCCTTS----CEECCSSTTHH-
T ss_pred CceeCCHHHHHHHHHHHHHhC----------------CCCcEEEECCCCccHHHHHHHHHHhCC----CeEEechhhCC-
Confidence 478999999999888876521 123689999999999999999988652 78888887554
Q ss_pred cCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeecCCeEEEE
Q 003038 699 TRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDAIVIL 778 (854)
Q Consensus 699 ~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIiIl 778 (854)
+.. +.+.+......++|||||+.++++.|..|+++|+++. -.++.||+
T Consensus 64 ------~~~----------------~~~~~~~a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~----------~~~~~iI~ 111 (143)
T 3co5_A 64 ------IDM----------------PMELLQKAEGGVLYVGDIAQYSRNIQTGITFIIGKAE----------RCRVRVIA 111 (143)
T ss_dssp ------HHC----------------HHHHHHHTTTSEEEEEECTTCCHHHHHHHHHHHHHHT----------TTTCEEEE
T ss_pred ------hHh----------------hhhHHHhCCCCeEEEeChHHCCHHHHHHHHHHHHhCC----------CCCEEEEE
Confidence 111 1222333446799999999999999999999999863 24567888
Q ss_pred ecC
Q 003038 779 SCE 781 (854)
Q Consensus 779 Tsn 781 (854)
|||
T Consensus 112 ~tn 114 (143)
T 3co5_A 112 SCS 114 (143)
T ss_dssp EEE
T ss_pred ecC
Confidence 887
No 43
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.07 E-value=3.3e-10 Score=129.59 Aligned_cols=137 Identities=13% Similarity=0.132 Sum_probs=90.7
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeC
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLG 305 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfid 305 (854)
..++++|+||||||||++|+++|..+ .+..|+.++.+.+...+.|+.+..++.++..++.. .+.|||||
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~---------~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~--~~~vl~iD 234 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEA---------NNSTFFSISSSDLVSKWLGESEKLVKNLFQLAREN--KPSIIFID 234 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHC---------CSSEEEEECCC---------CCCTHHHHHHHHHHS--CSEEEEES
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc---------CCCCEEEEeHHHHHhhhcchHHHHHHHHHHHHHHc--CCeEEEEe
Confidence 45789999999999999999999874 35689999999999889999999999999999875 68999999
Q ss_pred ccccc-cccccccccccccchhhhHHHHHHHhhccc-CCCCceEEEEEecCHHHHHHhhccCCchhhhhccC-CCCCCCc
Q 003038 306 DLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG-IGENARFWLMGIATFQSYMRCKSGHPSLETLWSLH-PLTIPAG 382 (854)
Q Consensus 306 el~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~~-~v~i~~~ 382 (854)
||+.+ ..+..... .........+-..+.. ....+.+.+||+|+... ..+|+|.| ||. .+.|+.|
T Consensus 235 Eid~l~~~~~~~~~------~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~-----~ld~al~r--Rf~~~i~i~~P 301 (444)
T 2zan_A 235 EIDSLCGSRSENES------EAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW-----VLDSAIRR--RFEKRIYIPLP 301 (444)
T ss_dssp CTTTTCCCSSCCCC------GGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGG-----GSCHHHHT--TCCEEEECCCC
T ss_pred chHhhccCCCCccc------cHHHHHHHHHHHHHhCcccCCCCEEEEecCCCcc-----ccCHHHHh--hcceEEEeCCc
Confidence 99999 54332111 1112233333333321 11123699999998653 47899999 774 5666666
Q ss_pred hHHH
Q 003038 383 SLSL 386 (854)
Q Consensus 383 sl~~ 386 (854)
+...
T Consensus 302 ~~~~ 305 (444)
T 2zan_A 302 EAHA 305 (444)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 5443
No 44
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.06 E-value=7.4e-10 Score=123.93 Aligned_cols=130 Identities=8% Similarity=0.107 Sum_probs=92.1
Q ss_pred CcccccHHHHHHHHHHHHH--------hhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceE
Q 003038 618 KKVPWQKDTVYDIANTVLK--------CRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFV 689 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~--------~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i 689 (854)
..|.|.++++..|..+|.. .+.|+.. ..-+||+||||||||.+|+++|..+ ..+|+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~-------------prGvLL~GPPGTGKTllAkAiA~e~---~~~f~ 211 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQ-------------PKGVILYGPPGTGKTLLARAVAHHT---DCKFI 211 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCC-------------CCCEEEESCSSSSHHHHHHHHHHHH---TCEEE
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCC-------------CCceEEeCCCCCCHHHHHHHHHHhh---CCCce
Confidence 4588999999999988864 2334433 2357899999999999999999988 46899
Q ss_pred EEccccccCcCCCccccccccccCCCCCCchHH----HHHHHHHcCCCEEEEEecCCCCCH-----------H---HHHH
Q 003038 690 SIALSSFSSTRADSTEDSRNKRSRDEQSCSYIE----RFAEAVSNNPHRVFLIEDVEQADY-----------C---SQKG 751 (854)
Q Consensus 690 ~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e----~L~eav~~~p~~ViliDEieka~~-----------~---v~~~ 751 (854)
.++++++. .++. |-.+ .+++..+.+..+||||||||..-+ . +.+.
T Consensus 212 ~v~~s~l~-------sk~v----------Gese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~ 274 (405)
T 4b4t_J 212 RVSGAELV-------QKYI----------GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLE 274 (405)
T ss_dssp EEEGGGGS-------CSST----------THHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHH
T ss_pred EEEhHHhh-------cccc----------chHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHH
Confidence 99988765 1110 3322 566777777789999999997632 2 4556
Q ss_pred HHHhhhcCeEecCCCceeecCCeEEEEecCCCCCCCCC
Q 003038 752 FKRAIESGRIVTSSGDEVSLGDAIVILSCESFSSRSRA 789 (854)
Q Consensus 752 Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn~f~~~s~~ 789 (854)
||..||.- -.-.+.+||+|||.-+....+
T Consensus 275 lL~~lDg~---------~~~~~V~vIaATNrpd~LDpA 303 (405)
T 4b4t_J 275 LLNQLDGF---------ETSKNIKIIMATNRLDILDPA 303 (405)
T ss_dssp HHHHHHTT---------TCCCCEEEEEEESCSSSSCHH
T ss_pred HHHhhhcc---------CCCCCeEEEeccCChhhCCHh
Confidence 66666621 123567899999976555443
No 45
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.06 E-value=5.3e-10 Score=123.01 Aligned_cols=133 Identities=8% Similarity=0.132 Sum_probs=85.2
Q ss_pred ccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCc
Q 003038 620 VPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSST 699 (854)
Q Consensus 620 V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~ 699 (854)
.+||++++..+..++... +....+||+||+|+|||++|+++|+.+++....- ...|..+..+
T Consensus 4 ~pw~~~~~~~l~~~i~~~-----------------~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~-~~~c~~c~~c 65 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAG-----------------RGHHALLIQALPGMGDDALIYALSRYLLCQQPQG-HKSCGHCRGC 65 (334)
T ss_dssp CGGGHHHHHHHHHHHHTT-----------------CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT-TBCCSCSHHH
T ss_pred CCchHHHHHHHHHHHHcC-----------------CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCC-CCCCCCCHHH
Confidence 589999999999888753 2345799999999999999999999997643210 0000100000
Q ss_pred CCCccccc-cccccCCC----CCCchHH--HHHHHHHcCC----CEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCce
Q 003038 700 RADSTEDS-RNKRSRDE----QSCSYIE--RFAEAVSNNP----HRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDE 768 (854)
Q Consensus 700 ~~~s~e~~-~~~rl~~~----~g~g~~e--~L~eav~~~p----~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~ 768 (854)
.......| .+.. +.+ ...+..+ .+.+.+...| ++||+|||+|+++...+|.|++.||+.
T Consensus 66 ~~~~~~~~~d~~~-~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep--------- 135 (334)
T 1a5t_A 66 QLMQAGTHPDYYT-LAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEP--------- 135 (334)
T ss_dssp HHHHHTCCTTEEE-ECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSC---------
T ss_pred HHHhcCCCCCEEE-EeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCC---------
Confidence 00000000 0000 111 1123332 4555555444 799999999999999999999999973
Q ss_pred eecCCeEEEEecCC
Q 003038 769 VSLGDAIVILSCES 782 (854)
Q Consensus 769 v~~~~aIiIlTsn~ 782 (854)
-.+++|||+||.
T Consensus 136 --~~~~~~Il~t~~ 147 (334)
T 1a5t_A 136 --PAETWFFLATRE 147 (334)
T ss_dssp --CTTEEEEEEESC
T ss_pred --CCCeEEEEEeCC
Confidence 257889999874
No 46
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.04 E-value=2.7e-09 Score=121.04 Aligned_cols=130 Identities=12% Similarity=0.148 Sum_probs=92.0
Q ss_pred CcccccHHHHHHHHHHHHHh--------hcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceE
Q 003038 618 KKVPWQKDTVYDIANTVLKC--------RSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFV 689 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~--------rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i 689 (854)
..|.|.++++..|..+|..- +.|+. |..-+||+||||||||.+|++||..+ ..+|+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~-------------~prGvLL~GPPGtGKTllAkAiA~e~---~~~~~ 244 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIK-------------PPKGVLLYGPPGTGKTLLAKAVAATI---GANFI 244 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC-------------CCCEEEEESCTTSSHHHHHHHHHHHH---TCEEE
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCC-------------CCCeEEEECCCCCcHHHHHHHHHHHh---CCCEE
Confidence 45789999999999888642 23443 33457899999999999999999998 46899
Q ss_pred EEccccccCcCCCccccccccccCCCCCCchHH----HHHHHHHcCCCEEEEEecCCCCC-----------HH---HHHH
Q 003038 690 SIALSSFSSTRADSTEDSRNKRSRDEQSCSYIE----RFAEAVSNNPHRVFLIEDVEQAD-----------YC---SQKG 751 (854)
Q Consensus 690 ~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e----~L~eav~~~p~~ViliDEieka~-----------~~---v~~~ 751 (854)
.++++++. .++. |-.+ .++...+.+..+||||||||..- .. +.+.
T Consensus 245 ~v~~s~l~-------sk~~----------Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~ 307 (437)
T 4b4t_L 245 FSPASGIV-------DKYI----------GESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLME 307 (437)
T ss_dssp EEEGGGTC-------CSSS----------SHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHH
T ss_pred EEehhhhc-------cccc----------hHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHH
Confidence 99988765 1111 2222 45666677778999999999652 22 4556
Q ss_pred HHHhhhcCeEecCCCceeecCCeEEEEecCCCCCCCCC
Q 003038 752 FKRAIESGRIVTSSGDEVSLGDAIVILSCESFSSRSRA 789 (854)
Q Consensus 752 Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn~f~~~s~~ 789 (854)
||..|+.- -+..+.+||+|||..+....+
T Consensus 308 lL~~lDg~---------~~~~~vivI~ATNrp~~LDpA 336 (437)
T 4b4t_L 308 LLTQMDGF---------DNLGQTKIIMATNRPDTLDPA 336 (437)
T ss_dssp HHHHHHSS---------SCTTSSEEEEEESSTTSSCTT
T ss_pred HHHHhhcc---------cCCCCeEEEEecCCchhhCHH
Confidence 77777631 123578999999976665544
No 47
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.04 E-value=7.1e-10 Score=127.42 Aligned_cols=140 Identities=11% Similarity=0.087 Sum_probs=96.3
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeCc
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLGD 306 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfide 306 (854)
.++++|+||||+|||++++++|... ++.|+.++.+.+...+.|..+.+++.++..++.. .|+||||||
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~----------~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~~~--~p~ILfIDE 116 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEA----------NVPFFHISGSDFVELFVGVGAARVRDLFAQAKAH--APCIVFIDE 116 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHH----------TCCEEEEEGGGTTTCCTTHHHHHHHHHHHHHHHT--CSEEEEEET
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc----------CCCeeeCCHHHHHHHHhcccHHHHHHHHHHHHhc--CCCEEEEec
Confidence 4679999999999999999999864 5679999999999889999999999999999875 699999999
Q ss_pred cccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchhhhhccC-CCCCCCchH
Q 003038 307 LEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLETLWSLH-PLTIPAGSL 384 (854)
Q Consensus 307 l~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~~-~v~i~~~sl 384 (854)
++.+ ..+..+..+. ....+.....+-..+.....+..+.+|++|+..+ ..||++-|..||. .|.|+.|++
T Consensus 117 id~l~~~r~~~~~g~---~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~-----~Ld~allR~gRFd~~i~i~~Pd~ 188 (476)
T 2ce7_A 117 IDAVGRHRGAGLGGG---HDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD-----ILDPALLRPGRFDKKIVVDPPDM 188 (476)
T ss_dssp GGGTCCC------------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG-----GSCGGGGSTTSSCEEEECCCCCH
T ss_pred hhhhhhhcccccCcC---cHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh-----hhchhhcccCcceeEeecCCCCH
Confidence 9999 5432110000 0001122222222221111122599999998754 3688988766775 566666665
Q ss_pred HH
Q 003038 385 SL 386 (854)
Q Consensus 385 ~~ 386 (854)
..
T Consensus 189 ~~ 190 (476)
T 2ce7_A 189 LG 190 (476)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 48
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.04 E-value=6.4e-10 Score=128.51 Aligned_cols=153 Identities=12% Similarity=0.095 Sum_probs=109.1
Q ss_pred cHHHHHHHHHHhhc-------------cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccc
Q 003038 211 RNEDVMYVIENLMS-------------KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMN 277 (854)
Q Consensus 211 r~~ei~~v~~~L~r-------------~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~ 277 (854)
.++.++++.+.+.+ +..++++|+||||+|||.++++++... +..|+.++.+.+.+.+
T Consensus 209 ~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~----------~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 209 CRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFLINGPEIMSKL 278 (489)
T ss_dssp CHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC----------SSEEEEEEHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh----------CCCEEEEEchHhhhhh
Confidence 56666666666543 456789999999999999999999873 5789999999999889
Q ss_pred hHHHHHHHHHHHHHHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHH
Q 003038 278 RVEVEQRVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQ 356 (854)
Q Consensus 278 rge~E~rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ 356 (854)
.|+.+..++.++..+... .+.|||||||+.+ ..+..... .........+-++|.....++.+.+|+||+..
T Consensus 279 ~g~~~~~~~~~f~~A~~~--~p~iLfLDEId~l~~~~~~~~~------~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKN--APAIIFIDELDAIAPKREKTHG------EVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp TTHHHHHHHHHHHHHHHT--CSEEEEEESHHHHCBCTTSCCC------HHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred cchhHHHHHHHHHHHHhc--CCcEEEecchhhhccccccccc------hHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 999999999999999875 6899999999999 54332100 01112334444444321122369999999876
Q ss_pred HHHHhhccCCchhhhhccC-CCCCCCchHHH
Q 003038 357 SYMRCKSGHPSLETLWSLH-PLTIPAGSLSL 386 (854)
Q Consensus 357 ey~k~~~~~pale~~~~~~-~v~i~~~sl~~ 386 (854)
+ ..+|+|.+.-+|. .|.|+.|+...
T Consensus 351 ~-----~Ld~al~r~gRf~~~i~i~~P~~~e 376 (489)
T 3hu3_A 351 N-----SIDPALRRFGRFDREVDIGIPDATG 376 (489)
T ss_dssp G-----GBCGGGGSTTSSCEEEECCCCCHHH
T ss_pred c-----ccCHHHhCCCcCceEEEeCCCCHHH
Confidence 3 4678998744453 25666665544
No 49
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.01 E-value=6.1e-10 Score=120.65 Aligned_cols=142 Identities=15% Similarity=0.167 Sum_probs=97.3
Q ss_pred cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEe
Q 003038 225 KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNL 304 (854)
Q Consensus 225 ~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfi 304 (854)
+..++++|+||||+|||++++++|..+ +..++.++...+...+.|+.+.+++.++..+... .++||||
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~----------~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~~~--~p~il~i 114 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISIKGPELLTMWFGESEANVREIFDKARQA--APCVLFF 114 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT----------TCEEEEECHHHHHHHHHTTCTTHHHHHHHHHHHT--CSEEEEE
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh----------CCCEEEEEhHHHHhhhcCchHHHHHHHHHHHHhc--CCeEEEE
Confidence 356789999999999999999999864 4689999998888888999999999999999875 6899999
Q ss_pred Cccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchhhhhcc-CCCCCCCc
Q 003038 305 GDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLETLWSL-HPLTIPAG 382 (854)
Q Consensus 305 del~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~-~~v~i~~~ 382 (854)
||++.+ ...........+ ..+.....+-..+........+.+||+|+..+ ..+|++-|.-|| ..+.|+.|
T Consensus 115 DEid~l~~~~~~~~~~~~~---~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~-----~ld~al~r~gRf~~~i~i~~p 186 (301)
T 3cf0_A 115 DELDSIAKARGGNIGDGGG---AADRVINQILTEMDGMSTKKNVFIIGATNRPD-----IIDPAILRPGRLDQLIYIPLP 186 (301)
T ss_dssp CSTTHHHHHHTTTTCCSSC---SCCHHHHHHHHHHHSSCTTSSEEEEEEESCGG-----GSCGGGGSTTSSCEEEECCCC
T ss_pred EChHHHhhccCCCcCCcch---HHHHHHHHHHHHhhcccCCCCEEEEEecCCcc-----ccChHHhcCCccceEEecCCc
Confidence 999999 443211000000 11123344444442211123599999998764 368888763344 24556655
Q ss_pred hHHH
Q 003038 383 SLSL 386 (854)
Q Consensus 383 sl~~ 386 (854)
+...
T Consensus 187 ~~~~ 190 (301)
T 3cf0_A 187 DEKS 190 (301)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 5443
No 50
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.01 E-value=3.3e-09 Score=119.17 Aligned_cols=130 Identities=14% Similarity=0.168 Sum_probs=91.1
Q ss_pred CcccccHHHHHHHHHHHHHh--------hcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceE
Q 003038 618 KKVPWQKDTVYDIANTVLKC--------RSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFV 689 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~--------rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i 689 (854)
..|.|.++++..|...|..- +.|+. |..-+||+||||||||.+|++||..+ ..+|+
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~-------------~prGvLLyGPPGTGKTlLAkAiA~e~---~~~fi 245 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIK-------------PPKGVILYGAPGTGKTLLAKAVANQT---SATFL 245 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCC-------------CCSEEEEESSTTTTHHHHHHHHHHHH---TCEEE
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC-------------CCCCCceECCCCchHHHHHHHHHHHh---CCCEE
Confidence 45789999999999988642 23433 23358999999999999999999988 46899
Q ss_pred EEccccccCcCCCccccccccccCCCCCCchHH----HHHHHHHcCCCEEEEEecCCCCC-----------HH---HHHH
Q 003038 690 SIALSSFSSTRADSTEDSRNKRSRDEQSCSYIE----RFAEAVSNNPHRVFLIEDVEQAD-----------YC---SQKG 751 (854)
Q Consensus 690 ~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e----~L~eav~~~p~~ViliDEieka~-----------~~---v~~~ 751 (854)
.++++++. .++ .|-.+ .+++..+++..+||||||||..- .. +.+.
T Consensus 246 ~v~~s~l~-------sk~----------vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~ 308 (437)
T 4b4t_I 246 RIVGSELI-------QKY----------LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLE 308 (437)
T ss_dssp EEESGGGC-------CSS----------SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHH
T ss_pred EEEHHHhh-------hcc----------CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHH
Confidence 99988765 111 13333 46666777777999999999652 23 3445
Q ss_pred HHHhhhcCeEecCCCceeecCCeEEEEecCCCCCCCCC
Q 003038 752 FKRAIESGRIVTSSGDEVSLGDAIVILSCESFSSRSRA 789 (854)
Q Consensus 752 Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn~f~~~s~~ 789 (854)
||..||.- -.-.+.+||+|||.-+....+
T Consensus 309 LL~~lDg~---------~~~~~ViVIaATNrpd~LDpA 337 (437)
T 4b4t_I 309 LLNQLDGF---------DDRGDVKVIMATNKIETLDPA 337 (437)
T ss_dssp HHHHHHHC---------CCSSSEEEEEEESCSTTCCTT
T ss_pred HHHHhhCc---------CCCCCEEEEEeCCChhhcCHH
Confidence 55555521 123578999999976666555
No 51
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.00 E-value=1.7e-09 Score=113.65 Aligned_cols=143 Identities=12% Similarity=0.091 Sum_probs=87.9
Q ss_pred cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEe
Q 003038 225 KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNL 304 (854)
Q Consensus 225 ~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfi 304 (854)
+..++++|+||||+|||++++++|..+ +..++.++.+.+...+.|+.+..++.++..+... .+.||||
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~--~~~vl~i 104 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA----------QVPFLAMAGAEFVEVIGGLGAARVRSLFKEARAR--APCIVYI 104 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH----------TCCEEEEETTTTSSSSTTHHHHHHHHHHHHHHHT--CSEEEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEechHHHHhhccChhHHHHHHHHHHHHhc--CCeEEEE
Confidence 345778999999999999999999875 4578999998888888899999999999998875 6899999
Q ss_pred Cccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchhhhhcc-CCCCCCCc
Q 003038 305 GDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLETLWSL-HPLTIPAG 382 (854)
Q Consensus 305 del~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~-~~v~i~~~ 382 (854)
||++.+ ........+.... ........+-+.+........+.+|++|+..+ ..++++.+.-|| ..+.|+.|
T Consensus 105 Deid~l~~~~~~~~~~~~~~--~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~-----~ld~~l~~~~R~~~~i~i~~p 177 (262)
T 2qz4_A 105 DEIDAVGKKRSTTMSGFSNT--EEEQTLNQLLVEMDGMGTTDHVIVLASTNRAD-----ILDGALMRPGRLDRHVFIDLP 177 (262)
T ss_dssp ECC---------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGG-----GGGSGGGSTTSCCEEEECCSC
T ss_pred eCcchhhccccccccCccch--hHHHHHHHHHHHhhCcCCCCCEEEEecCCChh-----hcCHHHhcCCcCCeEEEeCCc
Confidence 999999 5432110000000 00011122222221111123699999998654 346777652233 34456555
Q ss_pred hHHH
Q 003038 383 SLSL 386 (854)
Q Consensus 383 sl~~ 386 (854)
+...
T Consensus 178 ~~~~ 181 (262)
T 2qz4_A 178 TLQE 181 (262)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 5544
No 52
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.00 E-value=2.3e-09 Score=117.21 Aligned_cols=143 Identities=14% Similarity=0.196 Sum_probs=97.7
Q ss_pred HHHHHHHHhhcCcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCC
Q 003038 607 ENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHN 686 (854)
Q Consensus 607 e~l~~L~~~L~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~ 686 (854)
+.+..+...+...|+||++++..+..++.. ...+||+||+|+|||.+|++||+.+ ..
T Consensus 16 ~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~--------------------~~~vll~G~pGtGKT~la~~la~~~---~~ 72 (331)
T 2r44_A 16 NKIKEVIDEVGKVVVGQKYMINRLLIGICT--------------------GGHILLEGVPGLAKTLSVNTLAKTM---DL 72 (331)
T ss_dssp HHHHHHHHHHTTTCCSCHHHHHHHHHHHHH--------------------TCCEEEESCCCHHHHHHHHHHHHHT---TC
T ss_pred HHHHHHHHHhccceeCcHHHHHHHHHHHHc--------------------CCeEEEECCCCCcHHHHHHHHHHHh---CC
Confidence 456778888999999999999888777654 1268999999999999999999987 24
Q ss_pred ceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCC--CEEEEEecCCCCCHHHHHHHHHhhhcCeEecC
Q 003038 687 NFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNP--HRVFLIEDVEQADYCSQKGFKRAIESGRIVTS 764 (854)
Q Consensus 687 ~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p--~~ViliDEieka~~~v~~~Ll~~le~G~l~d~ 764 (854)
.+++++++..... ..........+....+. .+..+ ..|+|||||+++++.+++.|+++|+++.++.
T Consensus 73 ~~~~i~~~~~~~~-----~~l~g~~~~~~~~~~~~------~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~- 140 (331)
T 2r44_A 73 DFHRIQFTPDLLP-----SDLIGTMIYNQHKGNFE------VKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTI- 140 (331)
T ss_dssp CEEEEECCTTCCH-----HHHHEEEEEETTTTEEE------EEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEE-
T ss_pred CeEEEecCCCCCh-----hhcCCceeecCCCCceE------eccCcccccEEEEEccccCCHHHHHHHHHHHhcCceee-
Confidence 6777776422210 00000000000000000 00111 3799999999999999999999999999886
Q ss_pred CCceeecC-CeEEEEecCCCC
Q 003038 765 SGDEVSLG-DAIVILSCESFS 784 (854)
Q Consensus 765 ~G~~v~~~-~aIiIlTsn~f~ 784 (854)
.|..+.+. +.+||.|+|..+
T Consensus 141 ~g~~~~~~~~~~viat~np~~ 161 (331)
T 2r44_A 141 GDTTYPLDNPFLVLATQNPVE 161 (331)
T ss_dssp TTEEEECCSSCEEEEEECTTC
T ss_pred CCEEEECCCCEEEEEecCCCc
Confidence 46666654 567777888544
No 53
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.99 E-value=2.7e-09 Score=115.85 Aligned_cols=127 Identities=11% Similarity=0.076 Sum_probs=92.7
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..++|++.++..+...+.....+ .++...+||+||+|+|||.+|+++++.+ ..+|+.++++.+.
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~-------------~~~~~~vll~G~~GtGKT~la~~i~~~~---~~~~~~~~~~~~~ 75 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKAR-------------KEPLEHLLLFGPPGLGKTTLAHVIAHEL---GVNLRVTSGPAIE 75 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHH-------------CSCCCCCEEECCTTCCCHHHHHHHHHHH---TCCEEEECTTTCC
T ss_pred HHhhCHHHHHHHHHHHHHHHHcc-------------CCCCCcEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeccccC
Confidence 45899999999998888765321 0233478999999999999999999987 2467777765443
Q ss_pred CcCCCccccccccccCCCCCCchHHHHHHHHHc--CCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecC--C-----Cce
Q 003038 698 STRADSTEDSRNKRSRDEQSCSYIERFAEAVSN--NPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTS--S-----GDE 768 (854)
Q Consensus 698 ~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~--~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~--~-----G~~ 768 (854)
. ...+.+.+.. ....+||||||+.+++..++.|+++++++.+.-- . .-.
T Consensus 76 -------~---------------~~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~ 133 (324)
T 1hqc_A 76 -------K---------------PGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIR 133 (324)
T ss_dssp -------S---------------HHHHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEE
T ss_pred -------C---------------hHHHHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccc
Confidence 0 1124444544 4568999999999999999999999999876521 1 112
Q ss_pred eecCCeEEEEecCC
Q 003038 769 VSLGDAIVILSCES 782 (854)
Q Consensus 769 v~~~~aIiIlTsn~ 782 (854)
....+.+||++||.
T Consensus 134 ~~~~~~~~i~~t~~ 147 (324)
T 1hqc_A 134 LELPRFTLIGATTR 147 (324)
T ss_dssp EECCCCEEEEEESC
T ss_pred cCCCCEEEEEeCCC
Confidence 34467889999885
No 54
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.98 E-value=1.5e-09 Score=116.75 Aligned_cols=135 Identities=10% Similarity=0.050 Sum_probs=92.8
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeC
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLG 305 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfid 305 (854)
..++++|+||||+|||++++.+|... +..++.++.+.+...+.|+.+.+++.++..+... .+.|||||
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~----------~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~vl~iD 120 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC----------SATFLNISAASLTSKYVGDGEKLVRALFAVARHM--QPSIIFID 120 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT----------TCEEEEEESTTTSSSSCSCHHHHHHHHHHHHHHT--CSEEEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh----------CCCeEEeeHHHHhhcccchHHHHHHHHHHHHHHc--CCcEEEec
Confidence 45789999999999999999999874 5689999999888888999999999999998875 68999999
Q ss_pred ccccc-cccccccccccccchhhhHHHHHHHhhc-cc-C-CCCceEEEEEecCHHHHHHhhccCCchhhhhcc-CCCCCC
Q 003038 306 DLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLV-CG-I-GENARFWLMGIATFQSYMRCKSGHPSLETLWSL-HPLTIP 380 (854)
Q Consensus 306 el~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll-~~-~-~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~-~~v~i~ 380 (854)
|++.+ ........ .........+-..+ .. . ...+.+.+|++|+..+ ..+|++.+ || +.+.++
T Consensus 121 Eid~l~~~~~~~~~------~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~-----~l~~~l~~--R~~~~i~~~ 187 (297)
T 3b9p_A 121 EVDSLLSERSSSEH------EASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ-----ELDEAALR--RFTKRVYVS 187 (297)
T ss_dssp TGGGTSBCC-----------CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG-----GBCHHHHH--HCCEEEECC
T ss_pred cHHHhccccccCcc------hHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh-----hCCHHHHh--hCCeEEEeC
Confidence 99999 54332100 00112222333333 11 1 1112599999998654 46888888 55 345555
Q ss_pred CchHH
Q 003038 381 AGSLS 385 (854)
Q Consensus 381 ~~sl~ 385 (854)
.|+..
T Consensus 188 ~p~~~ 192 (297)
T 3b9p_A 188 LPDEQ 192 (297)
T ss_dssp CCCHH
T ss_pred CcCHH
Confidence 55443
No 55
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.98 E-value=2.1e-09 Score=121.77 Aligned_cols=130 Identities=10% Similarity=0.090 Sum_probs=89.8
Q ss_pred CcccccHHHHHHHHHHHHHh--------hcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceE
Q 003038 618 KKVPWQKDTVYDIANTVLKC--------RSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFV 689 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~--------rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i 689 (854)
..|.|.++++..|...|... +.|+. |..-+||+||||||||.+|++||..+ ..+|+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~-------------~prGvLLyGPPGTGKTllAkAiA~e~---~~~f~ 244 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR-------------APKGALMYGPPGTGKTLLARACAAQT---NATFL 244 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC-------------CCCEEEEESCTTSSHHHHHHHHHHHH---TCEEE
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC-------------CCCeeEEECcCCCCHHHHHHHHHHHh---CCCEE
Confidence 46789999999998887542 23433 23357899999999999999999998 46899
Q ss_pred EEccccccCcCCCccccccccccCCCCCCchHH----HHHHHHHcCCCEEEEEecCCCC-----------CHH---HHHH
Q 003038 690 SIALSSFSSTRADSTEDSRNKRSRDEQSCSYIE----RFAEAVSNNPHRVFLIEDVEQA-----------DYC---SQKG 751 (854)
Q Consensus 690 ~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e----~L~eav~~~p~~ViliDEieka-----------~~~---v~~~ 751 (854)
.++++++. .++ .|-.+ .++...+.+..+||||||||.. +.. +.+.
T Consensus 245 ~v~~s~l~-------~~~----------vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~ 307 (434)
T 4b4t_M 245 KLAAPQLV-------QMY----------IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLE 307 (434)
T ss_dssp EEEGGGGC-------SSC----------SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHH
T ss_pred EEehhhhh-------hcc----------cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHH
Confidence 99988765 111 13333 4566666666799999999953 122 3455
Q ss_pred HHHhhhcCeEecCCCceeecCCeEEEEecCCCCCCCCC
Q 003038 752 FKRAIESGRIVTSSGDEVSLGDAIVILSCESFSSRSRA 789 (854)
Q Consensus 752 Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn~f~~~s~~ 789 (854)
||..|+.- -+-.+.+||+|||..+....+
T Consensus 308 lL~~ldg~---------~~~~~ViVIaaTNrp~~LD~A 336 (434)
T 4b4t_M 308 LLNQLDGF---------SSDDRVKVLAATNRVDVLDPA 336 (434)
T ss_dssp HHHHHTTS---------CSSCSSEEEEECSSCCCCCTT
T ss_pred HHHHhhcc---------CCCCCEEEEEeCCCchhcCHh
Confidence 66666521 012467899999976666555
No 56
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.98 E-value=2.2e-09 Score=116.67 Aligned_cols=112 Identities=15% Similarity=0.258 Sum_probs=80.3
Q ss_pred ccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhC---CCCceEEEccccccC
Q 003038 622 WQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFG---SHNNFVSIALSSFSS 698 (854)
Q Consensus 622 GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg---~~~~~i~id~s~~~~ 698 (854)
||++++..+...|... + ...+||+||+|+|||++|++||+.... ....|+.++.+.
T Consensus 1 g~~~~~~~L~~~i~~~-----------------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~--- 59 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-----------------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG--- 59 (305)
T ss_dssp ---CHHHHHHHHHHTC-----------------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---
T ss_pred ChHHHHHHHHHHHHCC-----------------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---
Confidence 8999999999888752 2 358999999999999999999986311 123444444321
Q ss_pred cCCCccccccccccCCCCCCchHH--HHHHHHHcCC----CEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeecC
Q 003038 699 TRADSTEDSRNKRSRDEQSCSYIE--RFAEAVSNNP----HRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLG 772 (854)
Q Consensus 699 ~~~~s~e~~~~~rl~~~~g~g~~e--~L~eav~~~p----~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~~ 772 (854)
...+..+ .+.+.+...| ++||+|||+|+++...+|.|+++||+. -.
T Consensus 60 -----------------~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep-----------~~ 111 (305)
T 2gno_A 60 -----------------ENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEP-----------PE 111 (305)
T ss_dssp -----------------SCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSC-----------CT
T ss_pred -----------------CCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhCC-----------CC
Confidence 0013332 4666666665 689999999999999999999999974 25
Q ss_pred CeEEEEecCC
Q 003038 773 DAIVILSCES 782 (854)
Q Consensus 773 ~aIiIlTsn~ 782 (854)
+++|||+|+.
T Consensus 112 ~t~fIl~t~~ 121 (305)
T 2gno_A 112 YAVIVLNTRR 121 (305)
T ss_dssp TEEEEEEESC
T ss_pred CeEEEEEECC
Confidence 7889998864
No 57
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.96 E-value=3.5e-09 Score=120.07 Aligned_cols=130 Identities=12% Similarity=0.121 Sum_probs=90.6
Q ss_pred CcccccHHHHHHHHHHHHH--------hhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceE
Q 003038 618 KKVPWQKDTVYDIANTVLK--------CRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFV 689 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~--------~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i 689 (854)
..|.|.++++..|.+.|.. .+.|+.. ..-+||+||||||||.+|++||..+ ..+|+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~p-------------prGILLyGPPGTGKTlLAkAiA~e~---~~~fi 272 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDP-------------PKGILLYGPPGTGKTLCARAVANRT---DATFI 272 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCC-------------CSEEEECSCTTSSHHHHHHHHHHHH---TCEEE
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCC-------------CCceEeeCCCCCcHHHHHHHHHhcc---CCCeE
Confidence 4688999999999888754 1334433 3357899999999999999999998 46899
Q ss_pred EEccccccCcCCCccccccccccCCCCCCchHH----HHHHHHHcCCCEEEEEecCCCCC-----------HH---HHHH
Q 003038 690 SIALSSFSSTRADSTEDSRNKRSRDEQSCSYIE----RFAEAVSNNPHRVFLIEDVEQAD-----------YC---SQKG 751 (854)
Q Consensus 690 ~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e----~L~eav~~~p~~ViliDEieka~-----------~~---v~~~ 751 (854)
.++++++. .++ .|..+ .++...+.+..+||||||||..- .. +.+.
T Consensus 273 ~vs~s~L~-------sk~----------vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~ 335 (467)
T 4b4t_H 273 RVIGSELV-------QKY----------VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLE 335 (467)
T ss_dssp EEEGGGGC-------CCS----------SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHH
T ss_pred EEEhHHhh-------ccc----------CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHH
Confidence 99988765 111 13333 45666677777999999999762 12 4455
Q ss_pred HHHhhhcCeEecCCCceeecCCeEEEEecCCCCCCCCC
Q 003038 752 FKRAIESGRIVTSSGDEVSLGDAIVILSCESFSSRSRA 789 (854)
Q Consensus 752 Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn~f~~~s~~ 789 (854)
||..|+.. -...+.+||+|||..+....+
T Consensus 336 lL~~lDg~---------~~~~~ViVIaATNrpd~LDpA 364 (467)
T 4b4t_H 336 LITQLDGF---------DPRGNIKVMFATNRPNTLDPA 364 (467)
T ss_dssp HHHHHHSS---------CCTTTEEEEEECSCTTSBCHH
T ss_pred HHHHhhcc---------CCCCcEEEEeCCCCcccCChh
Confidence 66666521 123578899999975555433
No 58
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.95 E-value=2.2e-09 Score=117.27 Aligned_cols=136 Identities=12% Similarity=0.082 Sum_probs=90.9
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..|+|+++++..|...|..... .+.... ...+|...+||+||+|+|||.+|+++|+.+ ..+|+.++++++.
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~---~~~~~~---~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~~~l~ 88 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVK---FPHLFK---GNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDLV 88 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHH---CGGGCC---TTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEHHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHh---CHHHHh---cCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEchHHHh
Confidence 4589999999999998854321 110000 001345679999999999999999999987 4678999887654
Q ss_pred CcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEecCCCCCH-----------HHHHHHHHhhhcCeEecCCC
Q 003038 698 STRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQADY-----------CSQKGFKRAIESGRIVTSSG 766 (854)
Q Consensus 698 ~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliDEieka~~-----------~v~~~Ll~~le~G~l~d~~G 766 (854)
.... + ........+.+..+....+||||||||.+.+ .+++.|+..|+.-.
T Consensus 89 -------~~~~-----g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~------ 149 (322)
T 3eie_A 89 -------SKWM-----G-ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG------ 149 (322)
T ss_dssp -------TTTG-----G-GHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGG------
T ss_pred -------hccc-----c-hHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccc------
Confidence 1110 0 0001222566666777789999999998754 56788888887311
Q ss_pred ceeecCCeEEEEecCCC
Q 003038 767 DEVSLGDAIVILSCESF 783 (854)
Q Consensus 767 ~~v~~~~aIiIlTsn~f 783 (854)
-.-.+.+||.|||..
T Consensus 150 --~~~~~v~vi~atn~~ 164 (322)
T 3eie_A 150 --NDSQGVLVLGATNIP 164 (322)
T ss_dssp --TSCCCEEEEEEESCG
T ss_pred --ccCCceEEEEecCCh
Confidence 122467888899863
No 59
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.94 E-value=2.3e-09 Score=121.31 Aligned_cols=130 Identities=14% Similarity=0.099 Sum_probs=91.4
Q ss_pred CcccccHHHHHHHHHHHHHh--------hcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceE
Q 003038 618 KKVPWQKDTVYDIANTVLKC--------RSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFV 689 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~--------rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i 689 (854)
..|.|.++++..|...|... +.|+.. ..-+||+||||||||.+|++||..+ ..+|+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~-------------prGiLL~GPPGtGKT~lakAiA~~~---~~~~~ 235 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDP-------------PRGVLLYGPPGTGKTMLVKAVANST---KAAFI 235 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCC-------------CCEEEEESCTTTTHHHHHHHHHHHH---TCEEE
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCC-------------CceEEEECCCCCCHHHHHHHHHHHh---CCCeE
Confidence 46899999999998888642 234432 2358999999999999999999998 46899
Q ss_pred EEccccccCcCCCccccccccccCCCCCCchHH----HHHHHHHcCCCEEEEEecCCCC-----------CH---HHHHH
Q 003038 690 SIALSSFSSTRADSTEDSRNKRSRDEQSCSYIE----RFAEAVSNNPHRVFLIEDVEQA-----------DY---CSQKG 751 (854)
Q Consensus 690 ~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e----~L~eav~~~p~~ViliDEieka-----------~~---~v~~~ 751 (854)
.++++++. .++ .|-.+ .++...+.+..+||||||+|.. +. .+.+.
T Consensus 236 ~v~~~~l~-------~~~----------~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~ 298 (428)
T 4b4t_K 236 RVNGSEFV-------HKY----------LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIE 298 (428)
T ss_dssp EEEGGGTC-------CSS----------CSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHH
T ss_pred EEecchhh-------ccc----------cchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHH
Confidence 99988765 111 03222 5666677777799999999842 21 35667
Q ss_pred HHHhhhcCeEecCCCceeecCCeEEEEecCCCCCCCCC
Q 003038 752 FKRAIESGRIVTSSGDEVSLGDAIVILSCESFSSRSRA 789 (854)
Q Consensus 752 Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn~f~~~s~~ 789 (854)
||..|+.- -+..+.+||+|||..+....+
T Consensus 299 lL~~ldg~---------~~~~~v~vI~aTN~~~~LD~A 327 (428)
T 4b4t_K 299 LLTQMDGF---------DQSTNVKVIMATNRADTLDPA 327 (428)
T ss_dssp HHHHHHHS---------CSSCSEEEEEEESCSSSCCHH
T ss_pred HHHHhhCC---------CCCCCEEEEEecCChhhcChh
Confidence 77777631 123568999999975554433
No 60
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.93 E-value=3.7e-09 Score=114.42 Aligned_cols=118 Identities=21% Similarity=0.301 Sum_probs=83.7
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCC--CceEEEcccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSH--NNFVSIALSS 695 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~--~~~i~id~s~ 695 (854)
..++||++++..+...+... + ...+||+||+|+|||++|+++++.+++.. ..++.++++.
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~-----------------~-~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~ 86 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG-----------------S-MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD 86 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT-----------------C-CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTC
T ss_pred HHhhCCHHHHHHHHHHHHcC-----------------C-CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccc
Confidence 45899999999988877652 1 12499999999999999999999987542 2356665442
Q ss_pred ccCcCCCccccccccccCCCCCCchHHHHHHHHHc-----CCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceee
Q 003038 696 FSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSN-----NPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVS 770 (854)
Q Consensus 696 ~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~-----~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~ 770 (854)
.. ... ...+.+.+.... ..+.||+|||+|++++..++.|++++++.
T Consensus 87 ~~-------~~~-----------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~----------- 137 (327)
T 1iqp_A 87 ER-------GIN-----------VIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMF----------- 137 (327)
T ss_dssp HH-------HHH-----------TTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHT-----------
T ss_pred cC-------chH-----------HHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhc-----------
Confidence 21 000 011123333322 45789999999999999999999999963
Q ss_pred cCCeEEEEecCC
Q 003038 771 LGDAIVILSCES 782 (854)
Q Consensus 771 ~~~aIiIlTsn~ 782 (854)
-.+++||++||.
T Consensus 138 ~~~~~~i~~~~~ 149 (327)
T 1iqp_A 138 SSNVRFILSCNY 149 (327)
T ss_dssp TTTEEEEEEESC
T ss_pred CCCCeEEEEeCC
Confidence 146788998875
No 61
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.93 E-value=5.9e-09 Score=114.15 Aligned_cols=138 Identities=12% Similarity=0.070 Sum_probs=90.5
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..|+|+++++..|..+|..... .+.-.. ...+|...+||+||+|+|||.+|+++|+.+. ...|+.++++++.
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~---~~~~~~---~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIK---FPHLFT---GKRTPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDLV 83 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHH---CGGGSC---TTCCCCSEEEEESSSSSCHHHHHHHHHHHTT--SCEEEEEECCSSC
T ss_pred HHhcCHHHHHHHHHHHHHHHHh---CHHHHh---CCCCCCceEEEECCCCccHHHHHHHHHHHcC--CCcEEEEEhHHHH
Confidence 4589999999999988864311 000000 0013445789999999999999999999873 3578889887654
Q ss_pred CcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEecCCCCC-----------HHHHHHHHHhhhcCeEecCCC
Q 003038 698 STRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQAD-----------YCSQKGFKRAIESGRIVTSSG 766 (854)
Q Consensus 698 ~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliDEieka~-----------~~v~~~Ll~~le~G~l~d~~G 766 (854)
... .+ ........+.+..+....+||||||||.+. ..+.+.|+..|+.-
T Consensus 84 -------~~~-----~g-~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~------- 143 (322)
T 1xwi_A 84 -------SKW-----LG-ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGV------- 143 (322)
T ss_dssp -------CSS-----CC-SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCS-------
T ss_pred -------hhh-----hh-HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcc-------
Confidence 111 00 000222356666677778999999999872 24667777777631
Q ss_pred ceeecCCeEEEEecCCCC
Q 003038 767 DEVSLGDAIVILSCESFS 784 (854)
Q Consensus 767 ~~v~~~~aIiIlTsn~f~ 784 (854)
...-.+.+||.+||.-+
T Consensus 144 -~~~~~~v~vI~atn~~~ 160 (322)
T 1xwi_A 144 -GVDNDGILVLGATNIPW 160 (322)
T ss_dssp -SSCCTTEEEEEEESCTT
T ss_pred -cccCCCEEEEEecCCcc
Confidence 11235788999998643
No 62
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.92 E-value=3.4e-09 Score=111.62 Aligned_cols=141 Identities=11% Similarity=0.086 Sum_probs=92.0
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeC
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLG 305 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfid 305 (854)
..++++|+||||+|||++++.++... +..++.++...+...+.|+.+.+++.++..+... .++|||||
T Consensus 44 ~~~~vll~G~~GtGKT~la~~la~~~----------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~--~~~il~iD 111 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGKTLLAKAIAGEA----------KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKA--APCIIFID 111 (257)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH----------TCCEEEECSCSSTTSCCCCCHHHHHHHHHHHHTT--CSEEEEET
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHc----------CCCEEEEeHHHHHHHhhhhhHHHHHHHHHHHHHc--CCeeehhh
Confidence 35679999999999999999999864 3467888888888778888889999999998764 68999999
Q ss_pred ccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchhhhhccC-CCCCCCch
Q 003038 306 DLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLETLWSLH-PLTIPAGS 383 (854)
Q Consensus 306 el~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~~-~v~i~~~s 383 (854)
|++.+ ........+... .....+..+-..+....++..+.+|++|+..+ ..+|++.|.-||. .+.|+.|+
T Consensus 112 eid~l~~~~~~~~~~~~~---~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~-----~l~~~l~r~~rf~~~i~i~~P~ 183 (257)
T 1lv7_A 112 EIDAVGRQRGAGLGGGHD---EREQTLNQMLVEMDGFEGNEGIIVIAATNRPD-----VLDPALLRPGRFDRQVVVGLPD 183 (257)
T ss_dssp THHHHTCCCSTTSCCTTC---HHHHHHHHHHHHHHTCCSSSCEEEEEEESCTT-----TSCGGGGSTTSSCEEEECCCCC
T ss_pred hhhhhccCCCCCcCCCch---HHHHHHHHHHHHhhCcccCCCEEEEEeeCCch-----hCCHHHcCCCcCCeEEEeCCCC
Confidence 99999 543221000000 00112222222222111223599999998753 4578886622332 45555555
Q ss_pred HHH
Q 003038 384 LSL 386 (854)
Q Consensus 384 l~~ 386 (854)
+..
T Consensus 184 ~~~ 186 (257)
T 1lv7_A 184 VRG 186 (257)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 63
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.92 E-value=2.9e-09 Score=113.64 Aligned_cols=136 Identities=12% Similarity=0.152 Sum_probs=88.2
Q ss_pred CcccccHHHHHHHHHHHHHhhcCC---CcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGT---MRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALS 694 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl---~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s 694 (854)
..|+|+++++..|...+......- .... .++...+||+||+|+|||.+|++||+.+ ...++.++++
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~~ 85 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVG--------IEPPKGILLYGPPGTGKTLLAKAVATET---NATFIRVVGS 85 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHC--------CCCCSEEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEGG
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC--------CCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehH
Confidence 357899999999888875532110 0000 0223468999999999999999999987 4578888877
Q ss_pred cccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEecCCCC-----------CHHHHHHHHHhhhcCeEec
Q 003038 695 SFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQA-----------DYCSQKGFKRAIESGRIVT 763 (854)
Q Consensus 695 ~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliDEieka-----------~~~v~~~Ll~~le~G~l~d 763 (854)
++. ... . +........+....+....+||||||||.+ +...+..|.+.++...-..
T Consensus 86 ~~~-------~~~-----~-~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 152 (285)
T 3h4m_A 86 ELV-------KKF-----I-GEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFD 152 (285)
T ss_dssp GGC-------CCS-----T-THHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTC
T ss_pred HHH-------Hhc-----c-chHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCC
Confidence 654 111 0 000012224555566666799999999987 6778888888776421000
Q ss_pred CCCceeecCCeEEEEecCCC
Q 003038 764 SSGDEVSLGDAIVILSCESF 783 (854)
Q Consensus 764 ~~G~~v~~~~aIiIlTsn~f 783 (854)
.-.+.+||+|||.-
T Consensus 153 ------~~~~~~vI~ttn~~ 166 (285)
T 3h4m_A 153 ------ARGDVKIIGATNRP 166 (285)
T ss_dssp ------SSSSEEEEEECSCG
T ss_pred ------CCCCEEEEEeCCCc
Confidence 11368899999853
No 64
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.92 E-value=6.5e-09 Score=109.13 Aligned_cols=138 Identities=13% Similarity=0.129 Sum_probs=79.6
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
+.|+|+++++..|...+...+..-.... . ..++...+||+||+|+|||++|++||+.+ ..+++.++++.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~-~-----g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~~~~~ 76 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQ-L-----GAKVPKGALLLGPPGCGKTLLAKAVATEA---QVPFLAMAGAEFV 76 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCCEEEEETTTTS
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHH-c-----CCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEechHHHH
Confidence 5689999999998887765332111000 0 00233468999999999999999999987 3578899888665
Q ss_pred CcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEecCCCC------------CHHHHHHHHHhhhcCeEecCC
Q 003038 698 STRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQA------------DYCSQKGFKRAIESGRIVTSS 765 (854)
Q Consensus 698 ~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliDEieka------------~~~v~~~Ll~~le~G~l~d~~ 765 (854)
+... +.+......+.+..+....+||||||||.+ +...+..|.+.++. + +..
T Consensus 77 -------~~~~------~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~--~-~~~ 140 (262)
T 2qz4_A 77 -------EVIG------GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVE--M-DGM 140 (262)
T ss_dssp -------SSST------THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHH--H-HTC
T ss_pred -------hhcc------ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHH--h-hCc
Confidence 1110 000011124455555666799999999998 33344444444432 0 000
Q ss_pred CceeecCCeEEEEecCCC
Q 003038 766 GDEVSLGDAIVILSCESF 783 (854)
Q Consensus 766 G~~v~~~~aIiIlTsn~f 783 (854)
..-.+.+||+|+|.-
T Consensus 141 ---~~~~~~~vi~~tn~~ 155 (262)
T 2qz4_A 141 ---GTTDHVIVLASTNRA 155 (262)
T ss_dssp ---CTTCCEEEEEEESCG
T ss_pred ---CCCCCEEEEecCCCh
Confidence 012478899999853
No 65
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.92 E-value=6.7e-10 Score=120.02 Aligned_cols=136 Identities=13% Similarity=0.012 Sum_probs=82.7
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhh--CCCeEEE
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCL--GRGIVLN 303 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~--~~~~ILf 303 (854)
..+.++|+||||||||++++++|..+ +..++.++.+.+.+.+.|+.+.++++++..+.... ..++|||
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l----------~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~ 104 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM----------GINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLF 104 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH----------TCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 34567889999999999999999886 67899999999999999999999999999883110 3689999
Q ss_pred eCccccc-cccccccccccccchhhhHHHHHHHhhccc-C----------CCCceEEEEEecCHHHHHHhhccCCchhhh
Q 003038 304 LGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG-I----------GENARFWLMGIATFQSYMRCKSGHPSLETL 371 (854)
Q Consensus 304 idel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~----------~g~g~l~lIgatT~~ey~k~~~~~pale~~ 371 (854)
||||+.+ +...+...+ + -........+-++|.. . ....++.+|+||+..+ ..+|+|-|.
T Consensus 105 iDEiD~~~~~~~~~~~~-~---~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~-----~ld~al~R~ 175 (293)
T 3t15_A 105 INDLDAGAGRMGGTTQY-T---VNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFS-----TLYAPLIRD 175 (293)
T ss_dssp EECCC------------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCC-----C--CHHHHH
T ss_pred EechhhhcCCCCCCccc-c---chHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcc-----cCCHHHhCC
Confidence 9999999 532211000 0 0000122344444421 0 0123599999998542 457888764
Q ss_pred hccCC-CCCC
Q 003038 372 WSLHP-LTIP 380 (854)
Q Consensus 372 ~~~~~-v~i~ 380 (854)
-||.. +.+|
T Consensus 176 ~R~d~~i~~P 185 (293)
T 3t15_A 176 GRMEKFYWAP 185 (293)
T ss_dssp HHEEEEEECC
T ss_pred CCCceeEeCc
Confidence 45532 3444
No 66
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.90 E-value=1.6e-09 Score=121.71 Aligned_cols=142 Identities=15% Similarity=0.195 Sum_probs=102.7
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..++|+..++..+...+.+.. .....+++.|++|+||+.+|+.|.........+|+.+||+.+.
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a----------------~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~ 200 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKIS----------------CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIP 200 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHT----------------TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSC
T ss_pred hhhhhccHHhhHHHHHHHHhc----------------CCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCC
Confidence 468999999888888887632 1234579999999999999999999887778899999999876
Q ss_pred CcCCCccccccccccCC-CCC-C-chHHHHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeecCCe
Q 003038 698 STRADSTEDSRNKRSRD-EQS-C-SYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDA 774 (854)
Q Consensus 698 ~~~~~s~e~~~~~rl~~-~~g-~-g~~e~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~~~a 774 (854)
+....+.+.+ ..| + |-...-.+.+......++|||||+.+++.+|..|+++|++|.++.-.|......|+
T Consensus 201 -------~~~~~~elfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~ 273 (387)
T 1ny5_A 201 -------RDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNV 273 (387)
T ss_dssp -------HHHHHHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCC
T ss_pred -------HHHHHHHhcCCCCCCCCCcccccCCceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccE
Confidence 2211111111 000 0 00000011123345689999999999999999999999999998766666667788
Q ss_pred EEEEecCC
Q 003038 775 IVILSCES 782 (854)
Q Consensus 775 IiIlTsn~ 782 (854)
.||++||.
T Consensus 274 rii~at~~ 281 (387)
T 1ny5_A 274 RILAATNR 281 (387)
T ss_dssp EEEEEESS
T ss_pred EEEEeCCC
Confidence 99999984
No 67
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.90 E-value=2.7e-10 Score=134.85 Aligned_cols=155 Identities=10% Similarity=0.107 Sum_probs=95.6
Q ss_pred HHHHHHHHhhcCcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCC
Q 003038 607 ENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHN 686 (854)
Q Consensus 607 e~l~~L~~~L~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~ 686 (854)
+.+..|.+.|...|+||++++..|..++.. |..+.. .. ...+....+||+||||+|||.+|++||+.+..
T Consensus 284 ~~~~~l~~~l~~~I~G~e~vk~al~~~l~~---g~~~~~-~~---~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r--- 353 (595)
T 3f9v_A 284 WIRDRIISSIAPSIYGHWELKEALALALFG---GVPKVL-ED---TRIRGDIHILIIGDPGTAKSQMLQFISRVAPR--- 353 (595)
T ss_dssp TGGGTHHHHTSSTTSCCHHHHHHHTTTTTC---CCCEET-TT---TEECCSCCEEEEESSCCTHHHHHHSSSTTCSC---
T ss_pred HHHHHHHHhhcchhcChHHHHHHHHHHHhC---CCcccc-cC---CCcCCCcceEEECCCchHHHHHHHHHHHhCCC---
Confidence 345678889999999999988776544332 211100 00 01133448999999999999999999987621
Q ss_pred ceEEEccccccCcCCCccccccccccC-CCCCC--chHHHHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEec
Q 003038 687 NFVSIALSSFSSTRADSTEDSRNKRSR-DEQSC--SYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVT 763 (854)
Q Consensus 687 ~~i~id~s~~~~~~~~s~e~~~~~rl~-~~~g~--g~~e~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d 763 (854)
.+...+.. ....... .. ...... +.... |. +. .....|+|||||+++++++|+.|+++|++|.++-
T Consensus 354 ~~~~~~~~--~~~~~l~-~~-~~~~~~~g~~~~~~G~---l~----~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i 422 (595)
T 3f9v_A 354 AVYTTGKG--STAAGLT-AA-VVREKGTGEYYLEAGA---LV----LADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSI 422 (595)
T ss_dssp EECCCTTC--STTTTSE-EE-CSSGGGTSSCSEEECH---HH----HHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEE
T ss_pred ceecCCCc--ccccccc-ce-eeeccccccccccCCe---eE----ecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEE
Confidence 11111110 0000000 00 000000 00000 22 22 2245799999999999999999999999999983
Q ss_pred -CCCceeec-CCeEEEEecCC
Q 003038 764 -SSGDEVSL-GDAIVILSCES 782 (854)
Q Consensus 764 -~~G~~v~~-~~aIiIlTsn~ 782 (854)
..|....+ .+++||.|+|.
T Consensus 423 ~~~g~~~~~~~~~~vIaatNp 443 (595)
T 3f9v_A 423 AKAGIVAKLNARAAVIAAGNP 443 (595)
T ss_dssp ESSSSEEEECCCCEEEEEECC
T ss_pred ecCCcEEEecCceEEEEEcCC
Confidence 45666666 57899999996
No 68
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.89 E-value=1e-08 Score=103.52 Aligned_cols=118 Identities=21% Similarity=0.321 Sum_probs=81.7
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCC--CceEEEcccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSH--NNFVSIALSS 695 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~--~~~i~id~s~ 695 (854)
..++|+++++..|...+... + ...++|+||+|+|||++|+.+++.+.+.. ..++.++++.
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~-----------------~-~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 78 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK-----------------N-IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT-----------------C-CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC
T ss_pred HHHcCcHHHHHHHHHHHhCC-----------------C-CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc
Confidence 34789999999888877542 1 12489999999999999999999885432 3455555442
Q ss_pred ccCcCCCccccccccccCCCCCCchHHHHHHHHH-----cCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceee
Q 003038 696 FSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVS-----NNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVS 770 (854)
Q Consensus 696 ~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~-----~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~ 770 (854)
.. ... ...+.+..... .....||+|||++++++..++.|++.+++.
T Consensus 79 ~~-------~~~-----------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~----------- 129 (226)
T 2chg_A 79 ER-------GID-----------VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMY----------- 129 (226)
T ss_dssp TT-------CHH-----------HHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHT-----------
T ss_pred cc-------ChH-----------HHHHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhc-----------
Confidence 22 000 01112233332 245789999999999999999999999863
Q ss_pred cCCeEEEEecCC
Q 003038 771 LGDAIVILSCES 782 (854)
Q Consensus 771 ~~~aIiIlTsn~ 782 (854)
-.+++||+|||.
T Consensus 130 ~~~~~~i~~~~~ 141 (226)
T 2chg_A 130 SKSCRFILSCNY 141 (226)
T ss_dssp TTTEEEEEEESC
T ss_pred CCCCeEEEEeCC
Confidence 246778888874
No 69
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.88 E-value=4.8e-09 Score=117.70 Aligned_cols=134 Identities=11% Similarity=0.109 Sum_probs=88.7
Q ss_pred CcccccHHHHHHHHHHHHHhhc--CCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRS--GTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSS 695 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rs--gl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~ 695 (854)
..|+||+.++..|...+..... .+.... ..+...+||+||+|+|||.+|++||+.+ ...|+.++++.
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~vLL~GppGtGKT~la~aia~~~---~~~~~~v~~~~ 183 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGL--------RAPARGLLLFGPPGNGKTMLAKAVAAES---NATFFNISAAS 183 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGG--------GCCCSEEEEESSTTSCHHHHHHHHHHHT---TCEEEEECSCC
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhccc--------CCCCceEEEECCCCCCHHHHHHHHHHhh---cCcEEEeeHHH
Confidence 3589999999999988865322 000000 1234589999999999999999999986 46899999886
Q ss_pred ccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEecCCCC-----------CHHHHHHHHHhhhcCeEecC
Q 003038 696 FSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQA-----------DYCSQKGFKRAIESGRIVTS 764 (854)
Q Consensus 696 ~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliDEieka-----------~~~v~~~Ll~~le~G~l~d~ 764 (854)
+. ..+. +........+.+..+....+||||||||.+ ...+++.|+..|+...-
T Consensus 184 l~-------~~~~------g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~--- 247 (389)
T 3vfd_A 184 LT-------SKYV------GEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQS--- 247 (389)
T ss_dssp C--------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred hh-------cccc------chHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccc---
Confidence 65 1110 000022234556666677799999999887 56678888888873211
Q ss_pred CCceeecCCeEEEEecCC
Q 003038 765 SGDEVSLGDAIVILSCES 782 (854)
Q Consensus 765 ~G~~v~~~~aIiIlTsn~ 782 (854)
..-.+.+||.|||.
T Consensus 248 ----~~~~~v~vI~atn~ 261 (389)
T 3vfd_A 248 ----AGDDRVLVMGATNR 261 (389)
T ss_dssp --------CEEEEEEESC
T ss_pred ----cCCCCEEEEEecCC
Confidence 11246789999985
No 70
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.87 E-value=4.2e-09 Score=114.68 Aligned_cols=117 Identities=14% Similarity=0.149 Sum_probs=85.9
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..++||++++..|...+... +....+||.||+|+|||.+|++||+.+ ...++.++++.+.
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~-----------------~~~~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~~~~ 85 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKG-----------------KIPHIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGSDCK 85 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTT-----------------CCCSEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETTTCC
T ss_pred HHHhCcHHHHHHHHHHHHcC-----------------CCCeEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEcccccC
Confidence 46899999999888887731 223478999999999999999999988 3567888765332
Q ss_pred CcCCCccccccccccCCCCCCchHHHHHHHHHcC----CCEEEEEecCCCCC-HHHHHHHHHhhhcCeEecCCCceeecC
Q 003038 698 STRADSTEDSRNKRSRDEQSCSYIERFAEAVSNN----PHRVFLIEDVEQAD-YCSQKGFKRAIESGRIVTSSGDEVSLG 772 (854)
Q Consensus 698 ~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~----p~~ViliDEieka~-~~v~~~Ll~~le~G~l~d~~G~~v~~~ 772 (854)
.. ...+.+.+..... .++||||||+|.+. .+.++.|++.+++. -.
T Consensus 86 -------~~------------~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~-----------~~ 135 (324)
T 3u61_B 86 -------ID------------FVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAY-----------SS 135 (324)
T ss_dssp -------HH------------HHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHH-----------GG
T ss_pred -------HH------------HHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhC-----------CC
Confidence 00 0011233333332 46899999999999 99999999999963 14
Q ss_pred CeEEEEecCCCC
Q 003038 773 DAIVILSCESFS 784 (854)
Q Consensus 773 ~aIiIlTsn~f~ 784 (854)
+++||+|||...
T Consensus 136 ~~~iI~~~n~~~ 147 (324)
T 3u61_B 136 NCSIIITANNID 147 (324)
T ss_dssp GCEEEEEESSGG
T ss_pred CcEEEEEeCCcc
Confidence 678999998643
No 71
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.87 E-value=9.5e-09 Score=117.45 Aligned_cols=135 Identities=14% Similarity=0.116 Sum_probs=88.5
Q ss_pred CcccccHHHHHHHHHHHHHhhc--CCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRS--GTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSS 695 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rs--gl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~ 695 (854)
..|+|+++++..|...|..... .+-... .+|...+||+||+|+|||.+|++||..+. ...|+.+++++
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~--------~~~~~~vLL~GppGtGKT~lA~aia~~~~--~~~~~~v~~~~ 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGK--------RTPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSD 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGG--------GCCCSEEEEECSTTSSHHHHHHHHHHHCC--SSEEEEECCC-
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhcc--------CCCCceEEEECCCCCCHHHHHHHHHHHcC--CCCEEEEeHHH
Confidence 3589999999999988853211 010000 13446789999999999999999999873 35789998876
Q ss_pred ccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEecCCCCC-----------HHHHHHHHHhhhcCeEecC
Q 003038 696 FSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQAD-----------YCSQKGFKRAIESGRIVTS 764 (854)
Q Consensus 696 ~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliDEieka~-----------~~v~~~Ll~~le~G~l~d~ 764 (854)
+. ... .+. .......+.+..+....+||||||||.+. ..+++.|+..|+.-
T Consensus 204 l~-------~~~-----~g~-~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~----- 265 (444)
T 2zan_A 204 LV-------SKW-----LGE-SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGV----- 265 (444)
T ss_dssp ---------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCS-----
T ss_pred HH-------hhh-----cch-HHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCc-----
Confidence 54 111 100 01223356666677778999999999883 35777788777642
Q ss_pred CCceeecCCeEEEEecCCC
Q 003038 765 SGDEVSLGDAIVILSCESF 783 (854)
Q Consensus 765 ~G~~v~~~~aIiIlTsn~f 783 (854)
...-.+.+||+|||..
T Consensus 266 ---~~~~~~v~vI~atn~~ 281 (444)
T 2zan_A 266 ---GVDNDGILVLGATNIP 281 (444)
T ss_dssp ---SCCCSSCEEEEEESCG
T ss_pred ---ccCCCCEEEEecCCCc
Confidence 1123578899999863
No 72
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.87 E-value=5.1e-09 Score=113.42 Aligned_cols=127 Identities=13% Similarity=0.127 Sum_probs=88.0
Q ss_pred cccccHHHHHHHHHHHHHh--------hcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEE
Q 003038 619 KVPWQKDTVYDIANTVLKC--------RSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVS 690 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~--------rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~ 690 (854)
.|+|+++++..|...|... ..|+ ++...+||+||+|+|||.+|++||..+ ..+|+.
T Consensus 16 di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~-------------~~~~~vLL~Gp~GtGKT~la~ala~~~---~~~~i~ 79 (301)
T 3cf0_A 16 DIGGLEDVKRELQELVQYPVEHPDKFLKFGM-------------TPSKGVLFYGPPGCGKTLLAKAIANEC---QANFIS 79 (301)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-------------CCCSEEEEECSSSSSHHHHHHHHHHHT---TCEEEE
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCC-------------CCCceEEEECCCCcCHHHHHHHHHHHh---CCCEEE
Confidence 4899999999999888652 2222 233478999999999999999999987 368899
Q ss_pred EccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEecCCCCCH--------------HHHHHHHHhh
Q 003038 691 IALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQADY--------------CSQKGFKRAI 756 (854)
Q Consensus 691 id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliDEieka~~--------------~v~~~Ll~~l 756 (854)
++++++. ... .+.. ......+.+..+....+||||||||.+.+ .+++.|+..|
T Consensus 80 v~~~~l~-------~~~-----~g~~-~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l 146 (301)
T 3cf0_A 80 IKGPELL-------TMW-----FGES-EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEM 146 (301)
T ss_dssp ECHHHHH-------HHH-----HTTC-TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHH
T ss_pred EEhHHHH-------hhh-----cCch-HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHh
Confidence 9877654 111 1000 01222455555666679999999996543 4678899998
Q ss_pred hcCeEecCCCceeecCCeEEEEecCCC
Q 003038 757 ESGRIVTSSGDEVSLGDAIVILSCESF 783 (854)
Q Consensus 757 e~G~l~d~~G~~v~~~~aIiIlTsn~f 783 (854)
+.-. .-.+.+||+|||.-
T Consensus 147 ~~~~---------~~~~v~vi~atn~~ 164 (301)
T 3cf0_A 147 DGMS---------TKKNVFIIGATNRP 164 (301)
T ss_dssp HSSC---------TTSSEEEEEEESCG
T ss_pred hccc---------CCCCEEEEEecCCc
Confidence 8310 12578999999864
No 73
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.87 E-value=1e-08 Score=113.85 Aligned_cols=134 Identities=13% Similarity=0.091 Sum_probs=88.7
Q ss_pred CcccccHHHHHHHHHHHHHhhc--CCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRS--GTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSS 695 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rs--gl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~ 695 (854)
..|+|++.++..|...|..... .+-... .++...+||+||+|+|||.+|++||+.+ ...|+.+++++
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~--------~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~~~ 152 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGL--------RGPPKGILLFGPPGTGKTLIGKCIASQS---GATFFSISASS 152 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGG--------GSCCSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEGGG
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhc--------cCCCceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEehHH
Confidence 4589999999999998875211 110000 1334578999999999999999999987 45789999886
Q ss_pred ccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEecCCCCC-----------HHHHHHHHHhhhcCeEecC
Q 003038 696 FSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQAD-----------YCSQKGFKRAIESGRIVTS 764 (854)
Q Consensus 696 ~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliDEieka~-----------~~v~~~Ll~~le~G~l~d~ 764 (854)
+. ... . +........+.+..+....+||||||||.+. ..+++.|+..++.....
T Consensus 153 l~-------~~~-----~-g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~-- 217 (357)
T 3d8b_A 153 LT-------SKW-----V-GEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTS-- 217 (357)
T ss_dssp GC-------CSS-----T-THHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC------
T ss_pred hh-------ccc-----c-chHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhccccc--
Confidence 65 111 0 0000111245555666778999999998763 35678888888743211
Q ss_pred CCceeecCCeEEEEecCC
Q 003038 765 SGDEVSLGDAIVILSCES 782 (854)
Q Consensus 765 ~G~~v~~~~aIiIlTsn~ 782 (854)
.-.+.+||.|||.
T Consensus 218 -----~~~~v~vI~atn~ 230 (357)
T 3d8b_A 218 -----SEDRILVVGATNR 230 (357)
T ss_dssp -----CCCCEEEEEEESC
T ss_pred -----CCCCEEEEEecCC
Confidence 1246788999985
No 74
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.86 E-value=1.1e-08 Score=109.94 Aligned_cols=135 Identities=10% Similarity=0.102 Sum_probs=87.5
Q ss_pred CcccccHHHHHHHHHHHHHhhc--CCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRS--GTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSS 695 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rs--gl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~ 695 (854)
..|+|+++++..|...+..... .+-... ..+...+||+||+|+|||.+|++||+.+ ...|+.++++.
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~--------~~~~~~vll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~ 89 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGL--------RAPAKGLLLFGPPGNGKTLLARAVATEC---SATFLNISAAS 89 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGG--------GCCCSEEEEESSSSSCHHHHHHHHHHHT---TCEEEEEESTT
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcC--------CCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEeeHHH
Confidence 3589999999999888865321 000000 1234578999999999999999999987 35788888876
Q ss_pred ccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEecCCCC-----------CHHHHHHHHHhhhcCeEecC
Q 003038 696 FSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQA-----------DYCSQKGFKRAIESGRIVTS 764 (854)
Q Consensus 696 ~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliDEieka-----------~~~v~~~Ll~~le~G~l~d~ 764 (854)
+. ... . +.+......+....+....+||||||||.+ ...+++.|+..++.....
T Consensus 90 l~-------~~~-----~-~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-- 154 (297)
T 3b9p_A 90 LT-------SKY-----V-GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGN-- 154 (297)
T ss_dssp TS-------SSS-----C-SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC----
T ss_pred Hh-------hcc-----c-chHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccccc--
Confidence 54 111 0 000011124555556667799999999877 356777888888753221
Q ss_pred CCceeecCCeEEEEecCC
Q 003038 765 SGDEVSLGDAIVILSCES 782 (854)
Q Consensus 765 ~G~~v~~~~aIiIlTsn~ 782 (854)
..-.+.+||.+||.
T Consensus 155 ----~~~~~v~vi~~tn~ 168 (297)
T 3b9p_A 155 ----PDGDRIVVLAATNR 168 (297)
T ss_dssp --------CEEEEEEESC
T ss_pred ----CCCCcEEEEeecCC
Confidence 11245788889985
No 75
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.86 E-value=5.8e-09 Score=115.73 Aligned_cols=136 Identities=12% Similarity=0.082 Sum_probs=89.1
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..|+|+++++..|..+|..... .+.... ...+|...+||+||+|+|||.+|++||..+ ..+|+.++++++.
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~---~~~~~~---~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~~~~v~~~~l~ 121 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVK---FPHLFK---GNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDLV 121 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHH---CGGGGC---SSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCEEEEEEHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHh---CHHHHh---cCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCEEEeeHHHHh
Confidence 4589999999999988854311 010000 001344578999999999999999999988 4678889887554
Q ss_pred CcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEecCCCCCH-----------HHHHHHHHhhhcCeEecCCC
Q 003038 698 STRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQADY-----------CSQKGFKRAIESGRIVTSSG 766 (854)
Q Consensus 698 ~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliDEieka~~-----------~v~~~Ll~~le~G~l~d~~G 766 (854)
... .+ ........+.+..+.+..+||||||||.+.+ .+++.|+..|+.-.
T Consensus 122 -------~~~-----~g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~------ 182 (355)
T 2qp9_X 122 -------SKW-----MG-ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG------ 182 (355)
T ss_dssp -------SCC---------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC------
T ss_pred -------hhh-----cc-hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccc------
Confidence 111 00 0001222455666667779999999998863 46788888887311
Q ss_pred ceeecCCeEEEEecCCC
Q 003038 767 DEVSLGDAIVILSCESF 783 (854)
Q Consensus 767 ~~v~~~~aIiIlTsn~f 783 (854)
-...+.+||.|||.-
T Consensus 183 --~~~~~v~vI~atn~~ 197 (355)
T 2qp9_X 183 --NDSQGVLVLGATNIP 197 (355)
T ss_dssp -----CCEEEEEEESCG
T ss_pred --ccCCCeEEEeecCCc
Confidence 123568899999853
No 76
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.85 E-value=5.2e-09 Score=119.70 Aligned_cols=107 Identities=16% Similarity=0.224 Sum_probs=69.2
Q ss_pred CcccccHHHH---HHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccc
Q 003038 618 KKVPWQKDTV---YDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALS 694 (854)
Q Consensus 618 ~~V~GQ~~av---~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s 694 (854)
..|+||++++ ..+...|... + ..++||+||+|+|||++|++||+.+ ...|+.++..
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~-----------------~-~~~vLL~GppGtGKTtlAr~ia~~~---~~~f~~l~a~ 84 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG-----------------H-LHSMILWGPPGTGKTTLAEVIARYA---NADVERISAV 84 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT-----------------C-CCEEEEECSTTSSHHHHHHHHHHHT---TCEEEEEETT
T ss_pred HHhCCcHHHHhchHHHHHHHHcC-----------------C-CcEEEEECCCCCcHHHHHHHHHHHh---CCCeEEEEec
Confidence 4589999999 6777777652 1 2589999999999999999999987 3567777643
Q ss_pred cccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeE
Q 003038 695 SFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRI 761 (854)
Q Consensus 695 ~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l 761 (854)
... .. .+. ...+............|||||||+.++...|+.|++.|++|.+
T Consensus 85 ~~~-------~~-~ir--------~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~v 135 (447)
T 3pvs_A 85 TSG-------VK-EIR--------EAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTI 135 (447)
T ss_dssp TCC-------HH-HHH--------HHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTTSC
T ss_pred cCC-------HH-HHH--------HHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCce
Confidence 211 00 000 0001111112235679999999999999999999999998653
No 77
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.85 E-value=1.6e-09 Score=115.19 Aligned_cols=135 Identities=9% Similarity=0.059 Sum_probs=80.9
Q ss_pred HhhcCcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcc
Q 003038 614 NALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIAL 693 (854)
Q Consensus 614 ~~L~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~ 693 (854)
..+...++|+..++..+..........+.... .++...+||+||+|+|||.+|+++|+.+ ..+|+.+++
T Consensus 29 ~~~~~~~i~~~~~~~~i~~~~~~l~~~l~~~~--------~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~~~i~~ 97 (272)
T 1d2n_A 29 SYIMNGIIKWGDPVTRVLDDGELLVQQTKNSD--------RTPLVSVLLEGPPHSGKTALAAKIAEES---NFPFIKICS 97 (272)
T ss_dssp TTCTTCCCCCSHHHHHHHHHHHHHHHHHHHCS--------SCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEEC
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHhccC--------CCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeC
Confidence 34556789998888777764211111111110 1345689999999999999999999986 356888876
Q ss_pred ccccCcCCCccccccccccCCCCCC---chHHHHHHHHHcCCCEEEEEecCCCC----------CHHHHHHHHHhhhcCe
Q 003038 694 SSFSSTRADSTEDSRNKRSRDEQSC---SYIERFAEAVSNNPHRVFLIEDVEQA----------DYCSQKGFKRAIESGR 760 (854)
Q Consensus 694 s~~~~~~~~s~e~~~~~rl~~~~g~---g~~e~L~eav~~~p~~ViliDEieka----------~~~v~~~Ll~~le~G~ 760 (854)
+... .+.... +....+.+.....+.+||||||||++ ...+++.|...++.-
T Consensus 98 ~~~~---------------~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~- 161 (272)
T 1d2n_A 98 PDKM---------------IGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKA- 161 (272)
T ss_dssp GGGC---------------TTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCC-
T ss_pred HHHh---------------cCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCc-
Confidence 5211 100000 11123444445577899999999986 444555555544421
Q ss_pred EecCCCceeecCCeEEEEecCC
Q 003038 761 IVTSSGDEVSLGDAIVILSCES 782 (854)
Q Consensus 761 l~d~~G~~v~~~~aIiIlTsn~ 782 (854)
. -.-.+.+||.|||.
T Consensus 162 -~------~~~~~~~ii~ttn~ 176 (272)
T 1d2n_A 162 -P------PQGRKLLIIGTTSR 176 (272)
T ss_dssp -C------STTCEEEEEEEESC
T ss_pred -c------CCCCCEEEEEecCC
Confidence 0 11245678888875
No 78
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.85 E-value=6.8e-09 Score=112.10 Aligned_cols=116 Identities=11% Similarity=0.229 Sum_probs=81.6
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCC--CceEEEccccc
Q 003038 619 KVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSH--NNFVSIALSSF 696 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~--~~~i~id~s~~ 696 (854)
.++||++++..+...+... +.. .++|+||+|+|||++|+.+++.+++.. ..++.++.+..
T Consensus 22 ~~~g~~~~~~~l~~~l~~~-----------------~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 83 (323)
T 1sxj_B 22 DIVGNKETIDRLQQIAKDG-----------------NMP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDD 83 (323)
T ss_dssp GCCSCTHHHHHHHHHHHSC-----------------CCC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSC
T ss_pred HHHCCHHHHHHHHHHHHcC-----------------CCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccc
Confidence 4789999999888886531 222 399999999999999999999986532 23555554421
Q ss_pred cCcCCCccccccccccCCCCCCchHHHHHHHHH-------cCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCcee
Q 003038 697 SSTRADSTEDSRNKRSRDEQSCSYIERFAEAVS-------NNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEV 769 (854)
Q Consensus 697 ~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~-------~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v 769 (854)
. +......+.+.+. ..++.||+|||+|+++...++.|++.+++.
T Consensus 84 ~-------------------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~---------- 134 (323)
T 1sxj_B 84 R-------------------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELY---------- 134 (323)
T ss_dssp C-------------------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHT----------
T ss_pred c-------------------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhcc----------
Confidence 1 0011111222222 234789999999999999999999999963
Q ss_pred ecCCeEEEEecCC
Q 003038 770 SLGDAIVILSCES 782 (854)
Q Consensus 770 ~~~~aIiIlTsn~ 782 (854)
-.+++||++||.
T Consensus 135 -~~~~~~il~~~~ 146 (323)
T 1sxj_B 135 -SNSTRFAFACNQ 146 (323)
T ss_dssp -TTTEEEEEEESC
T ss_pred -CCCceEEEEeCC
Confidence 156788998875
No 79
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.84 E-value=1.4e-08 Score=111.70 Aligned_cols=114 Identities=16% Similarity=0.216 Sum_probs=81.0
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCC--ceEEEccccc
Q 003038 619 KVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHN--NFVSIALSSF 696 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~--~~i~id~s~~ 696 (854)
.++||++++..|...|... + ...++|+||+|+|||++|++||+.+++... .++.++.+..
T Consensus 26 ~~~g~~~~~~~L~~~i~~g-----------------~-~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~ 87 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVDEG-----------------K-LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDD 87 (340)
T ss_dssp GCCSCHHHHHHHHHHHHTT-----------------C-CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSC
T ss_pred HhcCcHHHHHHHHHHHhcC-----------------C-CceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccc
Confidence 4789999999988887642 1 124899999999999999999999987532 2444443321
Q ss_pred cCcCCCccccccccccCCCCCCchHH---HHHHHHHc-----CCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCce
Q 003038 697 SSTRADSTEDSRNKRSRDEQSCSYIE---RFAEAVSN-----NPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDE 768 (854)
Q Consensus 697 ~~~~~~s~e~~~~~rl~~~~g~g~~e---~L~eav~~-----~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~ 768 (854)
. |..+ .+.+.... ..+.|++|||+|+++.+.++.|+++|++.
T Consensus 88 ~---------------------~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~--------- 137 (340)
T 1sxj_C 88 R---------------------GIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERY--------- 137 (340)
T ss_dssp C---------------------SHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHT---------
T ss_pred c---------------------cHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcC---------
Confidence 1 1111 12222211 23799999999999999999999999974
Q ss_pred eecCCeEEEEecCC
Q 003038 769 VSLGDAIVILSCES 782 (854)
Q Consensus 769 v~~~~aIiIlTsn~ 782 (854)
-.+++||++||.
T Consensus 138 --~~~~~~il~~n~ 149 (340)
T 1sxj_C 138 --TKNTRFCVLANY 149 (340)
T ss_dssp --TTTEEEEEEESC
T ss_pred --CCCeEEEEEecC
Confidence 146778888875
No 80
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.83 E-value=3.3e-09 Score=114.36 Aligned_cols=117 Identities=21% Similarity=0.320 Sum_probs=82.1
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCC--CceEEEccccc
Q 003038 619 KVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSH--NNFVSIALSSF 696 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~--~~~i~id~s~~ 696 (854)
.++||++++..|...+... +. .++||+||+|+|||++|+++++.+++.. ..++.++++..
T Consensus 18 ~~~g~~~~~~~l~~~l~~~-----------------~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 79 (319)
T 2chq_A 18 EVVGQDEVIQRLKGYVERK-----------------NI-PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE 79 (319)
T ss_dssp GSCSCHHHHHHHHTTTTTT-----------------CC-CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTST
T ss_pred HHhCCHHHHHHHHHHHhCC-----------------CC-CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccc
Confidence 4789999888776665421 12 2489999999999999999999987653 34677776543
Q ss_pred cCcCCCccccccccccCCCCCCchHHHHHHHHH-----cCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeec
Q 003038 697 SSTRADSTEDSRNKRSRDEQSCSYIERFAEAVS-----NNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSL 771 (854)
Q Consensus 697 ~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~-----~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~ 771 (854)
. .... ..+.+.+... ..++.||+|||+|++++..++.|++++++. -
T Consensus 80 ~-------~~~~-----------~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~-----------~ 130 (319)
T 2chq_A 80 R-------GIDV-----------VRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMY-----------S 130 (319)
T ss_dssp T-------CTTT-----------SSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSS-----------S
T ss_pred c-------ChHH-----------HHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhc-----------C
Confidence 2 0000 0011222221 245789999999999999999999999862 2
Q ss_pred CCeEEEEecCC
Q 003038 772 GDAIVILSCES 782 (854)
Q Consensus 772 ~~aIiIlTsn~ 782 (854)
.+++||++||.
T Consensus 131 ~~~~~i~~~~~ 141 (319)
T 2chq_A 131 KSCRFILSCNY 141 (319)
T ss_dssp SSEEEEEEESC
T ss_pred CCCeEEEEeCC
Confidence 46789998875
No 81
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.83 E-value=7.2e-09 Score=113.59 Aligned_cols=129 Identities=15% Similarity=0.205 Sum_probs=80.6
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCC---CCceEEEccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGS---HNNFVSIALS 694 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~---~~~~i~id~s 694 (854)
..++||++++..|...+... ++ ..++|+||+|+|||++|++||+.+.+. ...++.++++
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~-----------------~~-~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 98 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSA-----------------NL-PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNAS 98 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCT-----------------TC-CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSS
T ss_pred HHhhCCHHHHHHHHHHHhcC-----------------CC-CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccc
Confidence 45899999988877775431 11 248999999999999999999998532 3456666655
Q ss_pred cccCcCCCccccccccccC----CCCCCchHHHHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceee
Q 003038 695 SFSSTRADSTEDSRNKRSR----DEQSCSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVS 770 (854)
Q Consensus 695 ~~~~~~~~s~e~~~~~rl~----~~~g~g~~e~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~ 770 (854)
... ....+...+ .....+............++.||+|||++.+++..++.|+++|+++.
T Consensus 99 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~---------- 161 (353)
T 1sxj_D 99 DER-------GISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYS---------- 161 (353)
T ss_dssp SCC-------CHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTT----------
T ss_pred ccc-------chHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcC----------
Confidence 322 000000000 00000000000000012356899999999999999999999999742
Q ss_pred cCCeEEEEecCC
Q 003038 771 LGDAIVILSCES 782 (854)
Q Consensus 771 ~~~aIiIlTsn~ 782 (854)
.+++||++||.
T Consensus 162 -~~~~~il~~~~ 172 (353)
T 1sxj_D 162 -GVTRFCLICNY 172 (353)
T ss_dssp -TTEEEEEEESC
T ss_pred -CCceEEEEeCc
Confidence 36778888864
No 82
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.82 E-value=1.3e-07 Score=126.96 Aligned_cols=105 Identities=10% Similarity=0.148 Sum_probs=74.9
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccC
Q 003038 619 KVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSS 698 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~ 698 (854)
.++--++|+..|++..+-.+ .|.|++|++|+.|+||+.++|..|-.- | ..+..|.++
T Consensus 1587 ~LVlF~dai~Hi~RI~Ril~----------------~p~G~~LLvGvgGsGkqSltrLaa~i~-~--~~~fqi~~~---- 1643 (2695)
T 4akg_A 1587 PMVIHESMVDHILRIDRALK----------------QVQGHMMLIGASRTGKTILTRFVAWLN-G--LKIVQPKIH---- 1643 (2695)
T ss_dssp CCCCCHHHHHHHHHHHHHHH----------------SSSEEEEEECTTTSCHHHHHHHHHHHT-T--CEEECCCCC----
T ss_pred eeeeHHHHHHHHHHHHHHHc----------------CCCCCEEEECCCCCcHHHHHHHHHHHh-C--CeeEEEEee----
Confidence 57778889988887655543 367899999999999999999776543 2 233333322
Q ss_pred cCCCccccccccccCCCCCCchH---HHHHHHH----HcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEec
Q 003038 699 TRADSTEDSRNKRSRDEQSCSYI---ERFAEAV----SNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVT 763 (854)
Q Consensus 699 ~~~~s~e~~~~~rl~~~~g~g~~---e~L~eav----~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d 763 (854)
.+||.. +.|...+ -++...|++|+|-+-.++.+...+-..|.+|.+.+
T Consensus 1644 -----------------~~Y~~~~f~eDLk~l~~~aG~~~~~~vFL~tD~qi~~e~FLE~IN~lL~sGEVP~ 1698 (2695)
T 4akg_A 1644 -----------------RHSNLSDFDMILKKAISDCSLKESRTCLIIDESNILETAFLERMNTLLANADIPD 1698 (2695)
T ss_dssp -----------------TTCCHHHHHHHHHHHHHHHHHSCCCEEEEEETTTCCSHHHHHHHHHHHHSSSCTT
T ss_pred -----------------CCCCHHHHHHHHHHHHHHcCCCCCceEEEEeccccccHHHHHHHHHHHccCCCCC
Confidence 234332 3443333 35778899999999999998888888888887753
No 83
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.82 E-value=8.1e-09 Score=101.71 Aligned_cols=119 Identities=14% Similarity=0.146 Sum_probs=80.3
Q ss_pred hcCcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhC-------CCCce
Q 003038 616 LEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFG-------SHNNF 688 (854)
Q Consensus 616 L~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg-------~~~~~ 688 (854)
-...++|+++.+..+...+.. +....++|+||+|+|||++|+.+++.+.. ....+
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~------------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~ 81 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSR------------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKL 81 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS------------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEE
T ss_pred ccchhhcchHHHHHHHHHHhC------------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeE
Confidence 346789999888887776532 11246799999999999999999998854 23456
Q ss_pred EEEccccccCcCCCccccccccccCCCCCC-ch----HHHHHHHHHcC-CCEEEEEecCCCCC---------HHHHHHHH
Q 003038 689 VSIALSSFSSTRADSTEDSRNKRSRDEQSC-SY----IERFAEAVSNN-PHRVFLIEDVEQAD---------YCSQKGFK 753 (854)
Q Consensus 689 i~id~s~~~~~~~~s~e~~~~~rl~~~~g~-g~----~e~L~eav~~~-p~~ViliDEieka~---------~~v~~~Ll 753 (854)
+.++++.+. .. ..+ +. ...+.+.+... ...||+|||++++. .++++.|+
T Consensus 82 ~~~~~~~~~-------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~ 145 (187)
T 2p65_A 82 VSLDLSSLI-------AG---------AKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILK 145 (187)
T ss_dssp EEECHHHHH-------HH---------CCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHH
T ss_pred EEEeHHHhh-------cC---------CCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHH
Confidence 666654332 00 001 11 11333344333 45799999999987 67889999
Q ss_pred HhhhcCeEecCCCceeecCCeEEEEecC
Q 003038 754 RAIESGRIVTSSGDEVSLGDAIVILSCE 781 (854)
Q Consensus 754 ~~le~G~l~d~~G~~v~~~~aIiIlTsn 781 (854)
..++++. .+||+++|
T Consensus 146 ~~~~~~~-------------~~ii~~~~ 160 (187)
T 2p65_A 146 PMLARGE-------------LRCIGATT 160 (187)
T ss_dssp HHHHTTC-------------SCEEEEEC
T ss_pred HHHhcCC-------------eeEEEecC
Confidence 9987643 44888876
No 84
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.82 E-value=8.2e-09 Score=101.73 Aligned_cols=119 Identities=8% Similarity=0.144 Sum_probs=80.4
Q ss_pred hcCcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhC-------CCCce
Q 003038 616 LEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFG-------SHNNF 688 (854)
Q Consensus 616 L~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg-------~~~~~ 688 (854)
-...++|+++.+..+...+.. +....++|+||+|+|||.+|+.+++.+.. ....+
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~------------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~ 81 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQR------------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRV 81 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS------------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEE
T ss_pred cccccccchHHHHHHHHHHhc------------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcE
Confidence 346789999988888777543 11246899999999999999999998854 23556
Q ss_pred EEEccccccCcCCCccccccccccCCCCCC-chH----HHHHHHH-HcCCCEEEEEecCCCCC--------HHHHHHHHH
Q 003038 689 VSIALSSFSSTRADSTEDSRNKRSRDEQSC-SYI----ERFAEAV-SNNPHRVFLIEDVEQAD--------YCSQKGFKR 754 (854)
Q Consensus 689 i~id~s~~~~~~~~s~e~~~~~rl~~~~g~-g~~----e~L~eav-~~~p~~ViliDEieka~--------~~v~~~Ll~ 754 (854)
+.++++.+.. +..+ |.. ..+.+.+ +.....||+|||+|.+. ..+++.|+.
T Consensus 82 ~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~ 145 (195)
T 1jbk_A 82 LALDMGALVA----------------GAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKP 145 (195)
T ss_dssp EEECHHHHHT----------------TTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHH
T ss_pred EEeeHHHHhc----------------cCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHH
Confidence 6666654320 0011 111 1233333 34557899999999984 566889988
Q ss_pred hhhcCeEecCCCceeecCCeEEEEecC
Q 003038 755 AIESGRIVTSSGDEVSLGDAIVILSCE 781 (854)
Q Consensus 755 ~le~G~l~d~~G~~v~~~~aIiIlTsn 781 (854)
.++.+ +.+||+++|
T Consensus 146 ~~~~~-------------~~~~i~~~~ 159 (195)
T 1jbk_A 146 ALARG-------------ELHCVGATT 159 (195)
T ss_dssp HHHTT-------------SCCEEEEEC
T ss_pred hhccC-------------CeEEEEeCC
Confidence 88764 344788775
No 85
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.81 E-value=2.8e-08 Score=109.73 Aligned_cols=136 Identities=15% Similarity=0.137 Sum_probs=82.9
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..++||++++..+...+...+ ....++|+||+|+|||++|+++|+.+.... ......+..+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----------------~~~~~ll~G~~G~GKT~la~~la~~l~~~~-~~~~~~~~~~~ 77 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----------------IHHAYLFSGTRGVGKTSIARLLAKGLNCET-GITATPCGVCD 77 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----------------CCSEEEEESCTTSSHHHHHHHHHHHHSCTT-CSCSSCCSSSH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----------------CCeEEEEECCCCCCHHHHHHHHHHHhCCCC-CCCCCCCcccH
Confidence 358999999999999886532 234789999999999999999999985432 11111111100
Q ss_pred CcCCCccccc-cccccCCC--CCCchHHHHHHHHHcC----CCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceee
Q 003038 698 STRADSTEDS-RNKRSRDE--QSCSYIERFAEAVSNN----PHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVS 770 (854)
Q Consensus 698 ~~~~~s~e~~-~~~rl~~~--~g~g~~e~L~eav~~~----p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~ 770 (854)
.+.......+ .+..+-.. .+..-...+.+.+... .+.||+|||+|+++...++.|++.+++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~----------- 146 (373)
T 1jr3_A 78 NCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP----------- 146 (373)
T ss_dssp HHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSC-----------
T ss_pred HHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcC-----------
Confidence 0000000000 00000000 0111122455555543 3689999999999999999999999861
Q ss_pred cCCeEEEEecCC
Q 003038 771 LGDAIVILSCES 782 (854)
Q Consensus 771 ~~~aIiIlTsn~ 782 (854)
-.+++||++|+.
T Consensus 147 ~~~~~~Il~~~~ 158 (373)
T 1jr3_A 147 PEHVKFLLATTD 158 (373)
T ss_dssp CSSEEEEEEESC
T ss_pred CCceEEEEEeCC
Confidence 246788888864
No 86
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.80 E-value=8.6e-10 Score=116.75 Aligned_cols=139 Identities=13% Similarity=0.085 Sum_probs=89.2
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeC
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLG 305 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfid 305 (854)
..++++|+||||+|||++++.+|... +..++.++...+...+.|+.+.+++.+++.+... .+.|||||
T Consensus 43 ~~~~vll~G~~GtGKT~la~~la~~~----------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~--~~~vl~iD 110 (268)
T 2r62_A 43 IPKGVLLVGPPGTGKTLLAKAVAGEA----------HVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQ--APSIIFID 110 (268)
T ss_dssp CCSCCCCBCSSCSSHHHHHHHHHHHH----------TCCCCCCCSCTTTTSCSSSCSSSSSTTHHHHHHS--CSCEEEES
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh----------CCCEEEechHHHHHhhcchHHHHHHHHHHHHHhc--CCeEEEEe
Confidence 46789999999999999999999875 3356777777777666666667777888888764 57899999
Q ss_pred ccccc-cccccccccccccchhhhHHHHHHHhhccc----CCCCceEEEEEecCHHHHHHhhccCCchhhhhcc-CCCCC
Q 003038 306 DLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG----IGENARFWLMGIATFQSYMRCKSGHPSLETLWSL-HPLTI 379 (854)
Q Consensus 306 el~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~----~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~-~~v~i 379 (854)
|++.+ .....+........ ....+..||.. ....+.+.+|++|+..+ ..+|++-+.+|| ..+.|
T Consensus 111 Eid~l~~~~~~~~~~~~~~~-----~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~-----~ld~~l~r~~Rf~~~i~i 180 (268)
T 2r62_A 111 EIDAIGKSRAAGGVVSGNDE-----REQTLNQLLAEMDGFGSENAPVIVLAATNRPE-----ILDPALMRPGRFDRQVLV 180 (268)
T ss_dssp CGGGTTC----------CCC-----SCSSTTTTTTTTTCSSCSCSCCEEEECBSCCT-----TSCGGGGSSSSSCCCCBC
T ss_pred ChhhhcccccccccCCCchh-----HHHHHHHHHHHhhCcccCCCCEEEEEecCCch-----hcCHhHcCCCCCCeEEEe
Confidence 99999 54321100000000 00012234422 11123589999998764 357888886667 45677
Q ss_pred CCchHHH
Q 003038 380 PAGSLSL 386 (854)
Q Consensus 380 ~~~sl~~ 386 (854)
+.|+...
T Consensus 181 ~~p~~~~ 187 (268)
T 2r62_A 181 DKPDFNG 187 (268)
T ss_dssp CCCCTTT
T ss_pred cCcCHHH
Confidence 7666443
No 87
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.77 E-value=4.7e-08 Score=107.99 Aligned_cols=66 Identities=20% Similarity=0.173 Sum_probs=50.6
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..++||+.++..+...+...+.|. .+...+||+||+|+|||.+|+++|+.+ +...+++.+++..+.
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~-------------~~~~~vLl~GppGtGKT~la~~la~~l-~~~~~~~~~~~~~~~ 109 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK-------------IAGRAVLIAGQPGTGKTAIAMGMAQAL-GPDTPFTAIAGSEIF 109 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC-------------CTTCEEEEEESTTSSHHHHHHHHHHHH-CSSCCEEEEEGGGGS
T ss_pred hhccChHHHHHHHHHHHHHHHcCC-------------CCCCEEEEECCCCCCHHHHHHHHHHHh-cccCCcccccchhhh
Confidence 468999999888776666655432 223478999999999999999999998 444578888876543
No 88
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.75 E-value=5.3e-08 Score=99.32 Aligned_cols=134 Identities=19% Similarity=0.195 Sum_probs=80.4
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..++|+++++..|...+... +....++|+||+|+|||++++.+++.+.... .++...+..+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~-----------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~-~~~~~~~~~~~ 84 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLG-----------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCET-GITATPCGVCD 84 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHT-----------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTT-CSCSSCCSCSH
T ss_pred HHHhCcHHHHHHHHHHHHcC-----------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCC-CCCCCCCcccH
Confidence 35899999999998888652 1224789999999999999999999885322 11111100000
Q ss_pred CcCCCccccccccccC--CCCCCchHHHHHHHHHc-------CCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCce
Q 003038 698 STRADSTEDSRNKRSR--DEQSCSYIERFAEAVSN-------NPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDE 768 (854)
Q Consensus 698 ~~~~~s~e~~~~~rl~--~~~g~g~~e~L~eav~~-------~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~ 768 (854)
..... .......+. .+......+.+.+.+.. ....||+|||++.+++..++.|++.+++.
T Consensus 85 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~--------- 153 (250)
T 1njg_A 85 NCREI--EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP--------- 153 (250)
T ss_dssp HHHHH--HTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSC---------
T ss_pred HHHHH--hccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcC---------
Confidence 00000 000000000 11111112223333332 23689999999999999999999999852
Q ss_pred eecCCeEEEEecCC
Q 003038 769 VSLGDAIVILSCES 782 (854)
Q Consensus 769 v~~~~aIiIlTsn~ 782 (854)
-.+++||++||.
T Consensus 154 --~~~~~~i~~t~~ 165 (250)
T 1njg_A 154 --PEHVKFLLATTD 165 (250)
T ss_dssp --CTTEEEEEEESC
T ss_pred --CCceEEEEEeCC
Confidence 246788888864
No 89
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.74 E-value=1.4e-08 Score=117.29 Aligned_cols=134 Identities=14% Similarity=0.126 Sum_probs=89.3
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCC--cccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTM--RRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSS 695 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~--~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~ 695 (854)
..|+|++.++..|...|......-. ..-+ .++...+||+||+|+|||.+|++||..+ ..+|+.+++++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g-------~~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~vn~~~ 273 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIG-------VKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPE 273 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHT-------CCCCCEEEEECSTTSSHHHHHHHHHHHC---SSEEEEEEHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcC-------CCCCCcEEEECcCCCCHHHHHHHHHHHh---CCCEEEEEchH
Confidence 3589999999999888865311000 0000 1233478999999999999999999987 46899999886
Q ss_pred ccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEecCCCCC-----------HHHHHHHHHhhhcCeEecC
Q 003038 696 FSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQAD-----------YCSQKGFKRAIESGRIVTS 764 (854)
Q Consensus 696 ~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliDEieka~-----------~~v~~~Ll~~le~G~l~d~ 764 (854)
+. ... . +...+....+++.......+||||||||.+. ..+++.|++.|+.-.
T Consensus 274 l~-------~~~-----~-g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~---- 336 (489)
T 3hu3_A 274 IM-------SKL-----A-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK---- 336 (489)
T ss_dssp HH-------TSC-----T-THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSC----
T ss_pred hh-------hhh-----c-chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccc----
Confidence 65 111 0 0000222234444455566999999996553 378999999998421
Q ss_pred CCceeecCCeEEEEecCCC
Q 003038 765 SGDEVSLGDAIVILSCESF 783 (854)
Q Consensus 765 ~G~~v~~~~aIiIlTsn~f 783 (854)
.-.+.+||.|||.-
T Consensus 337 -----~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 337 -----QRAHVIVMAATNRP 350 (489)
T ss_dssp -----TTSCEEEEEEESCG
T ss_pred -----cCCceEEEEecCCc
Confidence 12468899999864
No 90
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.74 E-value=5.4e-08 Score=111.83 Aligned_cols=134 Identities=12% Similarity=0.138 Sum_probs=87.3
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
+.|+|+++++..|...+...+.-....+ - ..++...+||+||+|+|||.+|++||..+ ..+|+.++++++.
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~-~-----g~~~p~gvLL~GppGtGKT~Laraia~~~---~~~f~~is~~~~~ 86 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNR-I-----GARMPKGILLVGPPGTGKTLLARAVAGEA---NVPFFHISGSDFV 86 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHT-T-----TCCCCSEEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGGTT
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhh-c-----CCCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCeeeCCHHHHH
Confidence 3589999999999888766432100000 0 00122248899999999999999999987 3578999888776
Q ss_pred CcCCCccccccccccCCCCCCch--HHHHHHHHHcCCCEEEEEecCCCCCH--------------HHHHHHHHhhhcCeE
Q 003038 698 STRADSTEDSRNKRSRDEQSCSY--IERFAEAVSNNPHRVFLIEDVEQADY--------------CSQKGFKRAIESGRI 761 (854)
Q Consensus 698 ~~~~~s~e~~~~~rl~~~~g~g~--~e~L~eav~~~p~~ViliDEieka~~--------------~v~~~Ll~~le~G~l 761 (854)
+.+ .|.|- ...+.+..+.+..+||||||||.+.+ .+++.|+..|+. +
T Consensus 87 -------~~~--------~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~--~ 149 (476)
T 2ce7_A 87 -------ELF--------VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDG--F 149 (476)
T ss_dssp -------TCC--------TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHH--S
T ss_pred -------HHH--------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhc--c
Confidence 211 01111 11344555556669999999998743 467788888873 1
Q ss_pred ecCCCceeecCCeEEEEecCCCC
Q 003038 762 VTSSGDEVSLGDAIVILSCESFS 784 (854)
Q Consensus 762 ~d~~G~~v~~~~aIiIlTsn~f~ 784 (854)
. .-.+.+||.+||.-+
T Consensus 150 ~-------~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 150 D-------SKEGIIVMAATNRPD 165 (476)
T ss_dssp C-------GGGTEEEEEEESCGG
T ss_pred C-------CCCCEEEEEecCChh
Confidence 0 124678999998643
No 91
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.74 E-value=4.3e-08 Score=103.16 Aligned_cols=137 Identities=16% Similarity=0.119 Sum_probs=84.9
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..|+|+++++..|...+...+..-.... . ..++...++|+||+|+|||++|++||..+ ..+++.++++.+.
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~-~-----~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~i~~~~~~ 82 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQK-L-----GGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDFV 82 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----------CCCCEEEEECCTTSCHHHHHHHHHHHH---TCCEEEECSCSST
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHH-c-----CCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCCEEEEeHHHHH
Confidence 4579999999888877654321000000 0 00122358999999999999999999987 3468889887665
Q ss_pred CcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEecCCCCCH--------------HHHHHHHHhhhcCeEec
Q 003038 698 STRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQADY--------------CSQKGFKRAIESGRIVT 763 (854)
Q Consensus 698 ~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliDEieka~~--------------~v~~~Ll~~le~G~l~d 763 (854)
+.. . +.+......+.+..+....+|+||||||.+.+ ..++.++..++.-.
T Consensus 83 -------~~~-----~-~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--- 146 (257)
T 1lv7_A 83 -------EMF-----V-GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE--- 146 (257)
T ss_dssp -------TSC-----C-CCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC---
T ss_pred -------HHh-----h-hhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc---
Confidence 111 0 01111122344555556678999999976532 45566777776311
Q ss_pred CCCceeecCCeEEEEecCCCCC
Q 003038 764 SSGDEVSLGDAIVILSCESFSS 785 (854)
Q Consensus 764 ~~G~~v~~~~aIiIlTsn~f~~ 785 (854)
.-.+.+||.|||..+.
T Consensus 147 ------~~~~~~vI~~tn~~~~ 162 (257)
T 1lv7_A 147 ------GNEGIIVIAATNRPDV 162 (257)
T ss_dssp ------SSSCEEEEEEESCTTT
T ss_pred ------cCCCEEEEEeeCCchh
Confidence 1246789999986543
No 92
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.74 E-value=4.8e-09 Score=110.98 Aligned_cols=130 Identities=15% Similarity=0.158 Sum_probs=80.3
Q ss_pred CcccccHHHHHHHHHHHHHhhc-------CCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEE
Q 003038 618 KKVPWQKDTVYDIANTVLKCRS-------GTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVS 690 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rs-------gl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~ 690 (854)
..|+|+++++..|...+...+. |. ++...+||+||+|+|||.+|++||+.+. .+|+.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~-------------~~~~~vll~G~~GtGKT~la~~la~~~~---~~~~~ 74 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGA-------------KIPKGVLLVGPPGTGKTLLAKAVAGEAH---VPFFS 74 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSC-------------CCCSCCCCBCSSCSSHHHHHHHHHHHHT---CCCCC
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCC-------------CCCceEEEECCCCCcHHHHHHHHHHHhC---CCEEE
Confidence 4578888888888777654221 11 1122478999999999999999999873 46777
Q ss_pred EccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEecCCCCCHH---------------HHHHHHHh
Q 003038 691 IALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQADYC---------------SQKGFKRA 755 (854)
Q Consensus 691 id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliDEieka~~~---------------v~~~Ll~~ 755 (854)
++++.+.. .. .+ .+......+.+.......+||||||||.+... .++.|+..
T Consensus 75 v~~~~~~~-------~~-----~~-~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~ 141 (268)
T 2r62_A 75 MGGSSFIE-------MF-----VG-LGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAE 141 (268)
T ss_dssp CCSCTTTT-------SC-----SS-SCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTT
T ss_pred echHHHHH-------hh-----cc-hHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHH
Confidence 87776551 11 00 00000011334444556689999999998653 45556666
Q ss_pred hhcCeEecCCCceeecCCeEEEEecCCCC
Q 003038 756 IESGRIVTSSGDEVSLGDAIVILSCESFS 784 (854)
Q Consensus 756 le~G~l~d~~G~~v~~~~aIiIlTsn~f~ 784 (854)
++.- .-.-.+.+||.|||.-+
T Consensus 142 l~~~--------~~~~~~v~vi~ttn~~~ 162 (268)
T 2r62_A 142 MDGF--------GSENAPVIVLAATNRPE 162 (268)
T ss_dssp TTCS--------SCSCSCCEEEECBSCCT
T ss_pred hhCc--------ccCCCCEEEEEecCCch
Confidence 6531 01224578899998644
No 93
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.73 E-value=2e-08 Score=110.11 Aligned_cols=50 Identities=12% Similarity=0.112 Sum_probs=39.4
Q ss_pred CEEEEEecCCCCCHHHHHHHHHhhhcCeEec-CCCceee-cCCeEEEEecCC
Q 003038 733 HRVFLIEDVEQADYCSQKGFKRAIESGRIVT-SSGDEVS-LGDAIVILSCES 782 (854)
Q Consensus 733 ~~ViliDEieka~~~v~~~Ll~~le~G~l~d-~~G~~v~-~~~aIiIlTsn~ 782 (854)
..|||||||+++++.+|+.|+++|++|...- ..|.... -.+.+||.|+|.
T Consensus 145 ~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~ 196 (350)
T 1g8p_A 145 RGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNP 196 (350)
T ss_dssp TEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECS
T ss_pred CCEEEEeChhhCCHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCC
Confidence 6899999999999999999999999986432 2333333 347889999984
No 94
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.72 E-value=1.4e-08 Score=113.38 Aligned_cols=140 Identities=16% Similarity=0.205 Sum_probs=97.1
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..++|+..++..+...+.+... ....+++.|++|+||+.+|+.+.+.-. ....|+.+||+.+.
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~----------------~~~~vli~GesGtGKe~lAr~ih~~s~-r~~~fv~vnc~~~~ 191 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK----------------SKAPVLITGESGTGKEIVARLIHRYSG-RKGAFVDLNCASIP 191 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT----------------SCSCEEEECCTTSSHHHHHHHHHHHHC-CCSCEEEEESSSSC
T ss_pred ccccccchHHHHHHhhhhhhhc----------------cchhheEEeCCCchHHHHHHHHHHhcc-ccCCcEEEEcccCC
Confidence 3578998888888777766422 234688999999999999999998774 34459999999876
Q ss_pred CcCCCccccccccccCC-CCC-C-chHHHHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceeecCCe
Q 003038 698 STRADSTEDSRNKRSRD-EQS-C-SYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVSLGDA 774 (854)
Q Consensus 698 ~~~~~s~e~~~~~rl~~-~~g-~-g~~e~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~~~~a 774 (854)
. ....+.+.+ ..| + |....-...+.......+|||||+.+++.+|..|+++|++|.++.-.|...-.-++
T Consensus 192 ~-------~~~~~~lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 264 (368)
T 3dzd_A 192 Q-------ELAESELFGHEKGAFTGALTRKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDI 264 (368)
T ss_dssp T-------TTHHHHHHEECSCSSSSCCCCEECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCC
T ss_pred h-------HHHHHHhcCccccccCCcccccCChHhhcCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeee
Confidence 2 221122211 000 0 10000001122334578999999999999999999999999999766655556688
Q ss_pred EEEEecC
Q 003038 775 IVILSCE 781 (854)
Q Consensus 775 IiIlTsn 781 (854)
.||.+||
T Consensus 265 rii~at~ 271 (368)
T 3dzd_A 265 RVISATN 271 (368)
T ss_dssp EEEEEES
T ss_pred EEEEecC
Confidence 8999887
No 95
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.70 E-value=1.7e-08 Score=115.71 Aligned_cols=76 Identities=12% Similarity=0.049 Sum_probs=64.9
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHH---HhhhCCCeEEE
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLV---RSCLGRGIVLN 303 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~---~~~~~~~~ILf 303 (854)
.++++|+||||||||++++++|..+.. ++.|+.++.+.+...+.|+.+. +.+++..+ +.. .|+|||
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~~--------~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~a~~~~~~--~~~il~ 131 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELGS--------KVPFCPMVGSEVYSTEIKKTEV-LMENFRRAIGLRIK--ETKEVY 131 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHCT--------TSCEEEEEGGGGCCSSSCHHHH-HHHHHHHTEEEEEE--EEEEEE
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhCC--------CceEEEEeHHHHHHHhhhhhHH-HHHHHHHHHhhhhc--CCcEEE
Confidence 368999999999999999999988522 3789999999999889999997 99999887 443 689999
Q ss_pred eCccccc-ccc
Q 003038 304 LGDLEWA-EFR 313 (854)
Q Consensus 304 idel~~l-~~~ 313 (854)
|||++.+ ..+
T Consensus 132 iDEid~l~~~r 142 (456)
T 2c9o_A 132 EGEVTELTPCE 142 (456)
T ss_dssp EEEEEEEEEC-
T ss_pred Eechhhccccc
Confidence 9999999 544
No 96
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.70 E-value=1.3e-07 Score=100.25 Aligned_cols=115 Identities=6% Similarity=0.055 Sum_probs=76.7
Q ss_pred ccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccccccccc-chHHHHHHHHHHHHHHHhhhCCCeEE
Q 003038 224 SKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHM-NRVEVEQRVEEIKNLVRSCLGRGIVL 302 (854)
Q Consensus 224 r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~-~rge~E~rl~~l~~~~~~~~~~~~IL 302 (854)
++..++++|+||||+|||++|+.+|... +..++.++......+ ..++....++.+++.+... .+.||
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~----------~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~vl 128 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEES----------NFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKS--QLSCV 128 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHH----------TCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTS--SEEEE
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhc--CCcEE
Confidence 4567789999999999999999999873 456777766544333 4566677888888888754 58899
Q ss_pred EeCccccc-cccccccccccccchhhhHHHHHHHhhccc--CCCCceEEEEEecCHHHH
Q 003038 303 NLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG--IGENARFWLMGIATFQSY 358 (854)
Q Consensus 303 fidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~--~~g~g~l~lIgatT~~ey 358 (854)
||||++.+ +........ . ......+..++.. ..+ ..+.+|++|+..+.
T Consensus 129 ~iDEid~l~~~~~~~~~~-~------~~~l~~L~~~~~~~~~~~-~~~~ii~ttn~~~~ 179 (272)
T 1d2n_A 129 VVDDIERLLDYVPIGPRF-S------NLVLQALLVLLKKAPPQG-RKLLIIGTTSRKDV 179 (272)
T ss_dssp EECCHHHHTTCBTTTTBC-C------HHHHHHHHHHTTCCCSTT-CEEEEEEEESCHHH
T ss_pred EEEChhhhhccCCCChhH-H------HHHHHHHHHHhcCccCCC-CCEEEEEecCChhh
Confidence 99999999 654321000 0 0112223334432 112 26889999987664
No 97
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.69 E-value=2.9e-08 Score=113.80 Aligned_cols=98 Identities=15% Similarity=0.104 Sum_probs=72.2
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
+.|+||++++..+...+...+.|.. |...+||+||||+|||.+|++||+.+ +....|+.++++++.
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~-------------~~~~iLl~GppGtGKT~la~ala~~l-~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKM-------------AGRAVLLAGPPGTGKTALALAIAQEL-GSKVPFCPMVGSEVY 102 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCC-------------TTCEEEEECCTTSSHHHHHHHHHHHH-CTTSCEEEEEGGGGC
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCC-------------CCCeEEEECCCcCCHHHHHHHHHHHh-CCCceEEEEeHHHHH
Confidence 6789999999998888877766543 23468999999999999999999997 545789999988665
Q ss_pred CcCCCccccccccccCCCCCCchHHHHHHHHH------cCCCEEEEEecCCCCCH
Q 003038 698 STRADSTEDSRNKRSRDEQSCSYIERFAEAVS------NNPHRVFLIEDVEQADY 746 (854)
Q Consensus 698 ~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~------~~p~~ViliDEieka~~ 746 (854)
.+. .|-.+.+.+.++ ....+||||||||.+-+
T Consensus 103 -------~~~----------~~~~~~~~~~f~~a~~~~~~~~~il~iDEid~l~~ 140 (456)
T 2c9o_A 103 -------STE----------IKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTP 140 (456)
T ss_dssp -------CSS----------SCHHHHHHHHHHHTEEEEEEEEEEEEEEEEEEEEE
T ss_pred -------HHh----------hhhhHHHHHHHHHHHhhhhcCCcEEEEechhhccc
Confidence 111 133333444443 34568999999997753
No 98
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.69 E-value=2.3e-08 Score=110.47 Aligned_cols=157 Identities=15% Similarity=0.183 Sum_probs=95.8
Q ss_pred cHHHHHHHHHHhhc----cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccccccccc----------
Q 003038 211 RNEDVMYVIENLMS----KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHM---------- 276 (854)
Q Consensus 211 r~~ei~~v~~~L~r----~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~---------- 276 (854)
|++++.++...|.+ ...++++|+||||+|||++++.++..+.... +..-.+..++.++.......
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~ 102 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARA-SSLGVLVKPIYVNARHRETPYRVASAIAEA 102 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHH-HHHTCCEEEEEEETTTSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHH-hccCCCeEEEEEECCcCCCHHHHHHHHHHH
Confidence 99999999998844 4667899999999999999999998874410 00001467777776543211
Q ss_pred ------chHH-HHHHHHHHHHHHHhhhCCCeEEEeCccccc-ccc-ccccccccccchhhhHHHHHHHhhcccCCCCceE
Q 003038 277 ------NRVE-VEQRVEEIKNLVRSCLGRGIVLNLGDLEWA-EFR-ASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARF 347 (854)
Q Consensus 277 ------~rge-~E~rl~~l~~~~~~~~~~~~ILfidel~~l-~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l 347 (854)
..|. ..+-+..+...+... ++++||||||+|++ ... .. .....+-+.+........+
T Consensus 103 l~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~vlilDEi~~l~~~~~~~-------------~~l~~l~~~~~~~~~~~~~ 168 (387)
T 2v1u_A 103 VGVRVPFTGLSVGEVYERLVKRLSRL-RGIYIIVLDEIDFLPKRPGGQ-------------DLLYRITRINQELGDRVWV 168 (387)
T ss_dssp HSCCCCSSCCCHHHHHHHHHHHHTTS-CSEEEEEEETTTHHHHSTTHH-------------HHHHHHHHGGGCC-----C
T ss_pred hCCCCCCCCCCHHHHHHHHHHHHhcc-CCeEEEEEccHhhhcccCCCC-------------hHHHhHhhchhhcCCCceE
Confidence 0111 223344455555544 56899999999999 542 10 1222222222211102369
Q ss_pred EEEEecCHHHHHHhhccCCchhhhhcc--CCCCCCCchHHH
Q 003038 348 WLMGIATFQSYMRCKSGHPSLETLWSL--HPLTIPAGSLSL 386 (854)
Q Consensus 348 ~lIgatT~~ey~k~~~~~pale~~~~~--~~v~i~~~sl~~ 386 (854)
.+|++|+...+.. ..++.+.+ +| +.+.++..+...
T Consensus 169 ~~I~~t~~~~~~~--~l~~~l~~--r~~~~~i~l~~l~~~~ 205 (387)
T 2v1u_A 169 SLVGITNSLGFVE--NLEPRVKS--SLGEVELVFPPYTAPQ 205 (387)
T ss_dssp EEEEECSCSTTSS--SSCHHHHT--TTTSEECCBCCCCHHH
T ss_pred EEEEEECCCchHh--hhCHHHHh--cCCCeEEeeCCCCHHH
Confidence 9999998765433 24777777 66 567887766443
No 99
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.69 E-value=3.1e-08 Score=108.92 Aligned_cols=136 Identities=13% Similarity=0.196 Sum_probs=76.2
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..++||++++..+...+.. . .+... ++|+||+|+|||+++++||+.+++....-+.++...+.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~------~----------~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~ 76 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQ------P----------RDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV 76 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTC------T----------TCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC---------
T ss_pred HHhcCCHHHHHHHHHHHhh------C----------CCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeec
Confidence 3478999888776665411 1 02223 89999999999999999999887654433333322111
Q ss_pred CcC-------CCccccccccccCC-CCCC-c--hHHHHHHHH-H-------------cCCCEEEEEecCCCCCHHHHHHH
Q 003038 698 STR-------ADSTEDSRNKRSRD-EQSC-S--YIERFAEAV-S-------------NNPHRVFLIEDVEQADYCSQKGF 752 (854)
Q Consensus 698 ~~~-------~~s~e~~~~~rl~~-~~g~-g--~~e~L~eav-~-------------~~p~~ViliDEieka~~~v~~~L 752 (854)
... ......+ + .+.. ..+. . ....+.+.+ . ..++.||+|||++.+++..++.|
T Consensus 77 ~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L 154 (354)
T 1sxj_E 77 TASNRKLELNVVSSPYH-L-EITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAAL 154 (354)
T ss_dssp ---------CCEECSSE-E-EECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHH
T ss_pred ccccccceeeeecccce-E-EecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHH
Confidence 000 0000000 0 0000 0010 1 011222222 1 22567999999999999999999
Q ss_pred HHhhhcCeEecCCCceeecCCeEEEEecCCC
Q 003038 753 KRAIESGRIVTSSGDEVSLGDAIVILSCESF 783 (854)
Q Consensus 753 l~~le~G~l~d~~G~~v~~~~aIiIlTsn~f 783 (854)
++.|++. -.+++||++|+..
T Consensus 155 ~~~le~~-----------~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 155 RRTMEKY-----------SKNIRLIMVCDSM 174 (354)
T ss_dssp HHHHHHS-----------TTTEEEEEEESCS
T ss_pred HHHHHhh-----------cCCCEEEEEeCCH
Confidence 9999962 1457889988753
No 100
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.66 E-value=5.5e-08 Score=112.37 Aligned_cols=140 Identities=14% Similarity=0.109 Sum_probs=92.2
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeCc
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLGD 306 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfide 306 (854)
.++++|+||||+|||++++++|..+ +..++.++...+...+.|+.+.++..+++.++.. .++|+||||
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~~----------~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~--~p~il~IDE 131 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGEA----------RVPFITASGSDFVEMFVGVGAARVRDLFETAKRH--APCIVFIDE 131 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHT----------TCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSS--SSCEEEEEC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhc--CCCEEEEeh
Confidence 3568999999999999999999764 3568899998888888999999999998887653 578999999
Q ss_pred cccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchhhhhcc-CCCCCCCchH
Q 003038 307 LEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLETLWSL-HPLTIPAGSL 384 (854)
Q Consensus 307 l~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~-~~v~i~~~sl 384 (854)
|+.+ ........+ . ..-.++....+-..+.....+..+.+|++|+..+. .||+|-|..|| ..|.|+.|++
T Consensus 132 Id~l~~~r~~~~~~-~--~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~-----LD~aLlr~gRfdr~i~i~~Pd~ 203 (499)
T 2dhr_A 132 IDAVGRKRGSGVGG-G--NDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI-----LDPALLRPGRFDRQIAIDAPDV 203 (499)
T ss_dssp GGGTCCCSSSSTTT-S--SHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGG-----SCTTTSSTTSSCCEEECCCCCH
T ss_pred HHHHHHhhccCcCC-C--cHHHHHHHHHHHHHhcccccCccEEEEEecCChhh-----cCcccccccccceEEecCCCCH
Confidence 9999 433211000 0 00111233333333321111124778888876542 78999874445 2456666665
Q ss_pred HH
Q 003038 385 SL 386 (854)
Q Consensus 385 ~~ 386 (854)
..
T Consensus 204 ~~ 205 (499)
T 2dhr_A 204 KG 205 (499)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 101
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.65 E-value=5.3e-08 Score=106.19 Aligned_cols=102 Identities=11% Similarity=0.056 Sum_probs=72.4
Q ss_pred CcHHHHHHHHHHhhc----cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccccccccc---------
Q 003038 210 IRNEDVMYVIENLMS----KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHM--------- 276 (854)
Q Consensus 210 vr~~ei~~v~~~L~r----~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~--------- 276 (854)
.||+|+.++...|.. .+.+|++|+||||||||++|+.++..+....--..+.+..++.++...+...
T Consensus 24 ~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~ 103 (318)
T 3te6_A 24 SQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWF 103 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHH
Confidence 399999999877655 3777899999999999999999999986532112233567888886544321
Q ss_pred -------chHHHHHHHHHHHHHHHhhhCCCeEEEeCcccccc
Q 003038 277 -------NRVEVEQRVEEIKNLVRSCLGRGIVLNLGDLEWAE 311 (854)
Q Consensus 277 -------~rge~E~rl~~l~~~~~~~~~~~~ILfidel~~l~ 311 (854)
..|+..+.|..+++.+....+.++|+||||+|.+.
T Consensus 104 ~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 104 AISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL 145 (318)
T ss_dssp HHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC
T ss_pred HhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh
Confidence 12445566777777652111468999999999993
No 102
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.64 E-value=3.7e-08 Score=116.86 Aligned_cols=52 Identities=12% Similarity=0.188 Sum_probs=39.8
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCC----------ceeecCCeEEEEecCC
Q 003038 731 NPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSG----------DEVSLGDAIVILSCES 782 (854)
Q Consensus 731 ~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G----------~~v~~~~aIiIlTsn~ 782 (854)
....|+|||||+++++.+|+.|+++|++|.++-..+ ..---.+.+||+++|.
T Consensus 200 a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~ 261 (604)
T 3k1j_A 200 AHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNL 261 (604)
T ss_dssp TTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECH
T ss_pred cCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCH
Confidence 345699999999999999999999999999875321 0111236789999883
No 103
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.64 E-value=4.8e-08 Score=111.67 Aligned_cols=127 Identities=9% Similarity=0.050 Sum_probs=81.2
Q ss_pred HHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhh
Q 003038 216 MYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSC 295 (854)
Q Consensus 216 ~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~ 295 (854)
..+...+...+-++++|+||||||||++++.++..+ +..++.++.... ..+++.+.+.........
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~----------~~~f~~l~a~~~---~~~~ir~~~~~a~~~~~~- 104 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA----------NADVERISAVTS---GVKEIREAIERARQNRNA- 104 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT----------TCEEEEEETTTC---CHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh----------CCCeEEEEeccC---CHHHHHHHHHHHHHhhhc-
Confidence 455555665666789999999999999999999874 456777764322 222333333322222221
Q ss_pred hCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhccc-CCCCceEEEEEecCHHHHHHhhccCCchhhhhc
Q 003038 296 LGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG-IGENARFWLMGIATFQSYMRCKSGHPSLETLWS 373 (854)
Q Consensus 296 ~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~ 373 (854)
+.+.||||||||.+ ..... .||.. ..+ .+++||+||...+ +..+++|-+ |
T Consensus 105 -~~~~iLfIDEI~~l~~~~q~--------------------~LL~~le~~--~v~lI~att~n~~---~~l~~aL~s--R 156 (447)
T 3pvs_A 105 -GRRTILFVDEVHRFNKSQQD--------------------AFLPHIEDG--TITFIGATTENPS---FELNSALLS--R 156 (447)
T ss_dssp -TCCEEEEEETTTCC--------------------------CCHHHHHTT--SCEEEEEESSCGG---GSSCHHHHT--T
T ss_pred -CCCcEEEEeChhhhCHHHHH--------------------HHHHHHhcC--ceEEEecCCCCcc---cccCHHHhC--c
Confidence 46899999999999 54221 23322 223 5999999998765 356788888 6
Q ss_pred cCCCCCCCchH
Q 003038 374 LHPLTIPAGSL 384 (854)
Q Consensus 374 ~~~v~i~~~sl 384 (854)
++.+.++.++.
T Consensus 157 ~~v~~l~~l~~ 167 (447)
T 3pvs_A 157 ARVYLLKSLST 167 (447)
T ss_dssp EEEEECCCCCH
T ss_pred eeEEeeCCcCH
Confidence 76666666553
No 104
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.64 E-value=1.6e-07 Score=103.92 Aligned_cols=144 Identities=12% Similarity=0.032 Sum_probs=93.0
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCC-CCceEEEccccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGS-HNNFVSIALSSF 696 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~-~~~~i~id~s~~ 696 (854)
..++|+++.+..|...+.....|-. .....++|+||+|+|||++++++++.+... ...++.++++..
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~------------~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~ 84 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPG------------HHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY 84 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTT------------SSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCC------------CCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC
Confidence 5689999999999999887654310 011278999999999999999999998765 467888887654
Q ss_pred cCcCCCccccccccccC----CCCCCchH---HHHHHHHHc-CCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCce
Q 003038 697 SSTRADSTEDSRNKRSR----DEQSCSYI---ERFAEAVSN-NPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDE 768 (854)
Q Consensus 697 ~~~~~~s~e~~~~~rl~----~~~g~g~~---e~L~eav~~-~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~ 768 (854)
.+... --..+...+ +..+.... +.+.+.+.. ....||+|||++.+++.+++.|++.+++..-
T Consensus 85 ~~~~~---~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~------- 154 (389)
T 1fnn_A 85 RNFTA---IIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADK------- 154 (389)
T ss_dssp CSHHH---HHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHH-------
T ss_pred CCHHH---HHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCC-------
Confidence 41000 000000001 11121222 244555544 3468999999999999999999999975210
Q ss_pred eecCCeEEEEecCCC
Q 003038 769 VSLGDAIVILSCESF 783 (854)
Q Consensus 769 v~~~~aIiIlTsn~f 783 (854)
..-.+..||++||..
T Consensus 155 ~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 155 LGAFRIALVIVGHND 169 (389)
T ss_dssp HSSCCEEEEEEESST
T ss_pred CCcCCEEEEEEECCc
Confidence 001356788888743
No 105
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.63 E-value=1.6e-08 Score=97.34 Aligned_cols=108 Identities=14% Similarity=0.047 Sum_probs=69.3
Q ss_pred cHHHHHHHHHHhhc--cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHH
Q 003038 211 RNEDVMYVIENLMS--KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEI 288 (854)
Q Consensus 211 r~~ei~~v~~~L~r--~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l 288 (854)
+.+.++++.+.+.+ +...|++|+||||||||.+|+.++..... .+..++ ++.+.+... ..+..+
T Consensus 6 ~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~-------~~~~~v-~~~~~~~~~------~~~~~~ 71 (145)
T 3n70_A 6 RSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRN-------AQGEFV-YRELTPDNA------PQLNDF 71 (145)
T ss_dssp SSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTT-------TTSCCE-EEECCTTTS------SCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCc-------cCCCEE-EECCCCCcc------hhhhcH
Confidence 45666666666543 47789999999999999999999876433 244567 777766543 112223
Q ss_pred HHHHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHH
Q 003038 289 KNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQ 356 (854)
Q Consensus 289 ~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ 356 (854)
+..+ .+.+||||||+.+ .... ..+..++..... ++++|++|+..
T Consensus 72 ~~~a-----~~g~l~ldei~~l~~~~q-----------------~~Ll~~l~~~~~--~~~~I~~t~~~ 116 (145)
T 3n70_A 72 IALA-----QGGTLVLSHPEHLTREQQ-----------------YHLVQLQSQEHR--PFRLIGIGDTS 116 (145)
T ss_dssp HHHH-----TTSCEEEECGGGSCHHHH-----------------HHHHHHHHSSSC--SSCEEEEESSC
T ss_pred HHHc-----CCcEEEEcChHHCCHHHH-----------------HHHHHHHhhcCC--CEEEEEECCcC
Confidence 3332 2347999999999 4321 234444432222 58999999853
No 106
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.63 E-value=3.9e-08 Score=114.50 Aligned_cols=131 Identities=15% Similarity=0.092 Sum_probs=79.0
Q ss_pred CcccccHHHHHHHHHHHHHhh----cCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcc
Q 003038 618 KKVPWQKDTVYDIANTVLKCR----SGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIAL 693 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~r----sgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~ 693 (854)
..|+||++++..|...+.... .|+.++.... ..+...+||+||+|+|||.+|++||+.+ ...++.+++
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~-----~~~~~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~ 110 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDG-----SGVFRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNA 110 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTS-----TTSCSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECT
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccC-----CCCCcEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeC
Confidence 358999999999999887643 3333322100 0133589999999999999999999998 357889988
Q ss_pred ccccCcCCCccccccccccCCCC-CCchHHHHHHH-HHcCCCEEEEEecCCCCCHHHH---HHHHHhhhcC
Q 003038 694 SSFSSTRADSTEDSRNKRSRDEQ-SCSYIERFAEA-VSNNPHRVFLIEDVEQADYCSQ---KGFKRAIESG 759 (854)
Q Consensus 694 s~~~~~~~~s~e~~~~~rl~~~~-g~g~~e~L~ea-v~~~p~~ViliDEieka~~~v~---~~Ll~~le~G 759 (854)
+.+..... ....+....... -.++.+...+. .......||||||||.+....+ +.|++.++++
T Consensus 111 s~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~ 178 (516)
T 1sxj_A 111 SDVRSKTL---LNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT 178 (516)
T ss_dssp TSCCCHHH---HHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC
T ss_pred CCcchHHH---HHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc
Confidence 86552000 000000000000 00111000000 1234578999999999977544 8888888863
No 107
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.62 E-value=1e-08 Score=125.51 Aligned_cols=139 Identities=14% Similarity=0.144 Sum_probs=95.1
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeC
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLG 305 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfid 305 (854)
...+++|+||||||||++++.+|..+ +..++.++.+.+...|.|+.+.++..+++.++.. .++|||||
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~----------~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~--~p~vl~iD 577 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISIKGPELLTMWFGESEANVREIFDKARQA--APCVLFFD 577 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHH----------TCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHH--CSBCCCCS
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHh----------CCCEEEEechHhhhhhcCccHHHHHHHHHHHHhc--CCeEEEEE
Confidence 45679999999999999999999875 3467888888898889999999999999999986 68999999
Q ss_pred ccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchhhhhccC-CCCCCCch
Q 003038 306 DLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLETLWSLH-PLTIPAGS 383 (854)
Q Consensus 306 el~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~~-~v~i~~~s 383 (854)
||+.+ ..+...... ...........+-+.+........+.+|+||+..+ ..||+|-|--||. .|.++.++
T Consensus 578 Eid~l~~~r~~~~~~---~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~-----~ld~allrpgRf~~~i~~~~p~ 649 (806)
T 1ypw_A 578 ELDSIAKARGGNIGD---GGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD-----IIDPAILRPGRLDQLIYIPLPD 649 (806)
T ss_dssp SHHHHCCTTTTCCSH---HHHHHHHHHHHHHTTCC------CCBCCCCCBSCG-----GGSCTTSSGGGTTSCCCCCCCC
T ss_pred ChhhhhhhccCCCCC---cchhHHHHHHHHHHHHhcccccCCeEEEEecCCcc-----cCCHHHhCccccCceeecCCCC
Confidence 99999 544321000 00111223233333332111223589999998643 3689998743553 56666555
Q ss_pred H
Q 003038 384 L 384 (854)
Q Consensus 384 l 384 (854)
.
T Consensus 650 ~ 650 (806)
T 1ypw_A 650 E 650 (806)
T ss_dssp C
T ss_pred H
Confidence 3
No 108
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.60 E-value=1.4e-07 Score=100.76 Aligned_cols=134 Identities=9% Similarity=0.093 Sum_probs=87.2
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeC
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLG 305 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfid 305 (854)
-.++++|+||||+|||++++.+|..+ +..++.++...+...+.|+.+.++..++..++.. .|+|+|+|
T Consensus 43 ~~~GvlL~Gp~GtGKTtLakala~~~----------~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~--~p~i~~~D 110 (274)
T 2x8a_A 43 TPAGVLLAGPPGCGKTLLAKAVANES----------GLNFISVKGPELLNMYVGESERAVRQVFQRAKNS--APCVIFFD 110 (274)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT----------TCEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHT--CSEEEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHc----------CCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhc--CCCeEeee
Confidence 34569999999999999999999763 3468888888888888999999999999998764 68999999
Q ss_pred ccccc-cccccccccccccchhhhHHHHHHHhhc-ccCCCCceEEEEEecCHHHHHHhhccCCchhhhhcc---CCCCCC
Q 003038 306 DLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLV-CGIGENARFWLMGIATFQSYMRCKSGHPSLETLWSL---HPLTIP 380 (854)
Q Consensus 306 el~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll-~~~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~---~~v~i~ 380 (854)
|++.+ ..+.....+ ...+.....-.-| +.... ..+.++++|+..+. .||++-|--|| -.|..|
T Consensus 111 eid~~~~~r~~~~~~------~~~~~~~~~l~~Lsgg~~~-~~~i~ia~tn~p~~-----LD~al~r~gRfd~~i~~~~P 178 (274)
T 2x8a_A 111 EVDALCPRRSDRETG------ASVRVVNQLLTEMDGLEAR-QQVFIMAATNRPDI-----IDPAILRPGRLDKTLFVGLP 178 (274)
T ss_dssp TCTTTCC---------------CTTHHHHHHHHHHTCCST-TCEEEEEEESCGGG-----SCHHHHSTTSSCEEEECCSC
T ss_pred hhhhhhcccCCCcch------HHHHHHHHHHHhhhccccc-CCEEEEeecCChhh-----CCHhhcCcccCCeEEEeCCc
Confidence 99998 543211000 0111222222223 11111 24778888876553 49999763233 234555
Q ss_pred Cch
Q 003038 381 AGS 383 (854)
Q Consensus 381 ~~s 383 (854)
+..
T Consensus 179 ~~~ 181 (274)
T 2x8a_A 179 PPA 181 (274)
T ss_dssp CHH
T ss_pred CHH
Confidence 443
No 109
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.59 E-value=1.3e-07 Score=95.35 Aligned_cols=143 Identities=6% Similarity=-0.037 Sum_probs=89.0
Q ss_pred cHHHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHH
Q 003038 211 RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKN 290 (854)
Q Consensus 211 r~~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~ 290 (854)
|++.+.++.+.+.+.+..+++|+||||+|||++++.++..+... .....++.++.+.... ...+...+..+..
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~-----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 94 (226)
T 2chg_A 22 QDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE-----NWRDNFIEMNASDERG--IDVVRHKIKEFAR 94 (226)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGG-----GGGGGEEEEETTCTTC--HHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhcc-----ccccceEEeccccccC--hHHHHHHHHHHhc
Confidence 88999999999988777789999999999999999999887432 1234566666543322 1222222222221
Q ss_pred HHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchh
Q 003038 291 LVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLE 369 (854)
Q Consensus 291 ~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale 369 (854)
......+++.||||||++++ ... ...+..++..... .+.+|++|+... ..+++|.
T Consensus 95 ~~~~~~~~~~vliiDe~~~l~~~~-----------------~~~l~~~l~~~~~--~~~~i~~~~~~~-----~~~~~l~ 150 (226)
T 2chg_A 95 TAPIGGAPFKIIFLDEADALTADA-----------------QAALRRTMEMYSK--SCRFILSCNYVS-----RIIEPIQ 150 (226)
T ss_dssp SCCSTTCSCEEEEEETGGGSCHHH-----------------HHHHHHHHHHTTT--TEEEEEEESCGG-----GSCHHHH
T ss_pred ccCCCccCceEEEEeChhhcCHHH-----------------HHHHHHHHHhcCC--CCeEEEEeCChh-----hcCHHHH
Confidence 10000145899999999999 431 1234444522122 477888876542 3467777
Q ss_pred hhhccCCCCCCCchHHH
Q 003038 370 TLWSLHPLTIPAGSLSL 386 (854)
Q Consensus 370 ~~~~~~~v~i~~~sl~~ 386 (854)
+ +|+.+.++..+...
T Consensus 151 ~--r~~~i~~~~~~~~~ 165 (226)
T 2chg_A 151 S--RCAVFRFKPVPKEA 165 (226)
T ss_dssp T--TSEEEECCCCCHHH
T ss_pred H--hCceeecCCCCHHH
Confidence 7 66677777655433
No 110
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.56 E-value=1.7e-07 Score=103.36 Aligned_cols=153 Identities=14% Similarity=0.232 Sum_probs=95.3
Q ss_pred cHHHHHHHHHHhhc----cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccccccccc----------
Q 003038 211 RNEDVMYVIENLMS----KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHM---------- 276 (854)
Q Consensus 211 r~~ei~~v~~~L~r----~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~---------- 276 (854)
|++++.++.+.|.+ +..++++|+||||+|||++++.++..+.... +. +..++.++.......
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~-~~---~~~~~~i~~~~~~~~~~~~~~i~~~ 100 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF-LG---KFKHVYINTRQIDTPYRVLADLLES 100 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHT-CS---SCEEEEEEHHHHCSHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHh-cC---CceEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999998874 3567899999999999999999998875421 00 456777664322110
Q ss_pred ------chHH-HHHHHHHHHHHHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEE
Q 003038 277 ------NRVE-VEQRVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFW 348 (854)
Q Consensus 277 ------~rge-~E~rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~ 348 (854)
..|. ..+.+..+.+.+... +.++||||||++++ ...... ....+..++... ....+.
T Consensus 101 l~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~vlilDE~~~l~~~~~~~-------------~l~~l~~~~~~~-~~~~~~ 165 (386)
T 2qby_A 101 LDVKVPFTGLSIAELYRRLVKAVRDY-GSQVVIVLDEIDAFVKKYNDD-------------ILYKLSRINSEV-NKSKIS 165 (386)
T ss_dssp TSCCCCSSSCCHHHHHHHHHHHHHTC-CSCEEEEEETHHHHHHSSCST-------------HHHHHHHHHHSC-CC--EE
T ss_pred hCCCCCCCCCCHHHHHHHHHHHHhcc-CCeEEEEEcChhhhhccCcCH-------------HHHHHhhchhhc-CCCeEE
Confidence 0111 333345555555554 55899999999999 543211 233333444210 112599
Q ss_pred EEEecCHHHHHHhhccCCchhhhhcc--CCCCCCCchHHH
Q 003038 349 LMGIATFQSYMRCKSGHPSLETLWSL--HPLTIPAGSLSL 386 (854)
Q Consensus 349 lIgatT~~ey~k~~~~~pale~~~~~--~~v~i~~~sl~~ 386 (854)
+|++|+...+... .++.+.+ +| +.+.++..+...
T Consensus 166 ~I~~~~~~~~~~~--~~~~~~~--r~~~~~i~l~~l~~~~ 201 (386)
T 2qby_A 166 FIGITNDVKFVDL--LDPRVKS--SLSEEEIIFPPYNAEE 201 (386)
T ss_dssp EEEEESCGGGGGG--CTTHHHH--TTTTEEEEECCCCHHH
T ss_pred EEEEECCCChHhh--hCHHHhc--cCCCeeEEeCCCCHHH
Confidence 9999987665432 4677766 55 456676655443
No 111
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.53 E-value=1.6e-07 Score=103.97 Aligned_cols=137 Identities=13% Similarity=0.175 Sum_probs=87.6
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCC--------CCceE
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGS--------HNNFV 689 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~--------~~~~i 689 (854)
..++|+++.+..+...+.....+ ++...++|+||+|+|||.+|+++++.+... ...++
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~--------------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~ 85 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN--------------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQA 85 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT--------------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEE
T ss_pred CCCCChHHHHHHHHHHHHHHHcC--------------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEE
Confidence 67999999999999998876542 123489999999999999999999987432 56788
Q ss_pred EEcccccc-CcCCCcccccccccc----CCCCCC---chHHHHHHHHHcCCCEEEEEecCCCCCHH-HHHH-HHHhhhcC
Q 003038 690 SIALSSFS-STRADSTEDSRNKRS----RDEQSC---SYIERFAEAVSNNPHRVFLIEDVEQADYC-SQKG-FKRAIESG 759 (854)
Q Consensus 690 ~id~s~~~-~~~~~s~e~~~~~rl----~~~~g~---g~~e~L~eav~~~p~~ViliDEieka~~~-v~~~-Ll~~le~G 759 (854)
.+++.... +....- ..-...+ .+..+. ...+.+.+.+...+. ||+|||+|.+... .++. +...++..
T Consensus 86 ~i~~~~~~~~~~~~~--~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~~~~~l~~l~~~~ 162 (384)
T 2qby_B 86 YVNCREVGGTPQAVL--SSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRRGGDIVLYQLLRSD 162 (384)
T ss_dssp EEEHHHHCSCHHHHH--HHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHSTTSHHHHHHHHTSS
T ss_pred EEECccCCCCHHHHH--HHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCCCCceeHHHHhcCC
Confidence 88876543 100000 0000111 001111 112355555655544 9999999998754 2555 55555431
Q ss_pred eEecCCCceeecCCeEEEEecCCC
Q 003038 760 RIVTSSGDEVSLGDAIVILSCESF 783 (854)
Q Consensus 760 ~l~d~~G~~v~~~~aIiIlTsn~f 783 (854)
.+.+||+|||..
T Consensus 163 ------------~~~~iI~~t~~~ 174 (384)
T 2qby_B 163 ------------ANISVIMISNDI 174 (384)
T ss_dssp ------------SCEEEEEECSST
T ss_pred ------------cceEEEEEECCC
Confidence 678899999853
No 112
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.52 E-value=4.6e-07 Score=100.28 Aligned_cols=147 Identities=11% Similarity=0.016 Sum_probs=92.2
Q ss_pred cHHHHHHHHHHhhc----cCcC--CceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccccccccc---c----
Q 003038 211 RNEDVMYVIENLMS----KRKR--NFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHM---N---- 277 (854)
Q Consensus 211 r~~ei~~v~~~L~r----~~k~--n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~---~---- 277 (854)
|++++.++...|.+ ...+ +++|+||||+|||++++.++..+.... +..++.++....... +
T Consensus 22 r~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~------~~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 22 REQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT------TARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp CHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC------CCEEEEEETTTCCSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc------CeeEEEEeCccCCCHHHHHHHHH
Confidence 99999999998876 2334 799999999999999999998865421 456777764432210 0
Q ss_pred ---------hH-HHHHHHHHHHHHHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhccc-CC-CC
Q 003038 278 ---------RV-EVEQRVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG-IG-EN 344 (854)
Q Consensus 278 ---------rg-e~E~rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~-g~ 344 (854)
.| ....-+..+...+... ++++||||||+|++ .. ....+..++.. .. ++
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~vlilDE~~~l~~~-----------------~~~~L~~~~~~~~~~~~ 157 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRER-DLYMFLVLDDAFNLAPD-----------------ILSTFIRLGQEADKLGA 157 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHT-TCCEEEEEETGGGSCHH-----------------HHHHHHHHTTCHHHHSS
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhc-CCeEEEEEECccccchH-----------------HHHHHHHHHHhCCCCCc
Confidence 11 1222333344444443 56899999999999 22 22344455522 11 00
Q ss_pred ceEEEEEecCHHHHHHhhccCCchhhhhccC--CCCCCCchHH
Q 003038 345 ARFWLMGIATFQSYMRCKSGHPSLETLWSLH--PLTIPAGSLS 385 (854)
Q Consensus 345 g~l~lIgatT~~ey~k~~~~~pale~~~~~~--~v~i~~~sl~ 385 (854)
..+.+|++|+..++... .++.+.+ +|. .+.+++.+..
T Consensus 158 ~~~~iI~~~~~~~~~~~--l~~~~~~--r~~~~~i~~~pl~~~ 196 (389)
T 1fnn_A 158 FRIALVIVGHNDAVLNN--LDPSTRG--IMGKYVIRFSPYTKD 196 (389)
T ss_dssp CCEEEEEEESSTHHHHT--SCHHHHH--HHTTCEEECCCCBHH
T ss_pred CCEEEEEEECCchHHHH--hCHHhhh--cCCCceEEeCCCCHH
Confidence 15999999876655543 4667766 454 4777765543
No 113
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.49 E-value=7.6e-08 Score=106.37 Aligned_cols=146 Identities=14% Similarity=0.045 Sum_probs=81.9
Q ss_pred cHHHHHH---HHHHhhccCc--CCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccc--------------
Q 003038 211 RNEDVMY---VIENLMSKRK--RNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSIS-------------- 271 (854)
Q Consensus 211 r~~ei~~---v~~~L~r~~k--~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-------------- 271 (854)
++..++. +.+.+..... ++++|+||||+|||++++.+|..+.. ++ .++.++..
T Consensus 49 ~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~-~~-------~~~~~~~~~~~~~~~~~~~~~~ 120 (368)
T 3uk6_A 49 QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP-DT-------PFTAIAGSEIFSLEMSKTEALT 120 (368)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS-SC-------CEEEEEGGGGSCSSSCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc-cC-------CcccccchhhhhcccchhHHHH
Confidence 5554433 4555554433 48999999999999999999998742 22 23333221
Q ss_pred -----------------------------------cccccchHHHHHHHHHHHHHHHhhh---CC----CeEEEeCcccc
Q 003038 272 -----------------------------------SFRHMNRVEVEQRVEEIKNLVRSCL---GR----GIVLNLGDLEW 309 (854)
Q Consensus 272 -----------------------------------~l~~~~rge~E~rl~~l~~~~~~~~---~~----~~ILfidel~~ 309 (854)
.+..++.|++...+++++..+.... +. |.||||||+|+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~ 200 (368)
T 3uk6_A 121 QAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHM 200 (368)
T ss_dssp HHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGG
T ss_pred HHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccc
Confidence 1233455666667777666654321 22 56999999999
Q ss_pred c-cccccccccccccchhhhHHHHHHHhhcccCCC-------CceEEEEEecCHHHHHHhhccCCchhhhhccCCCCCCC
Q 003038 310 A-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGE-------NARFWLMGIATFQSYMRCKSGHPSLETLWSLHPLTIPA 381 (854)
Q Consensus 310 l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g-------~g~l~lIgatT~~ey~k~~~~~pale~~~~~~~v~i~~ 381 (854)
+ ... ...+.+++..... +..+.+|++||...+ ...+|+|.+ ||+.+.++.
T Consensus 201 l~~~~-----------------~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~---~~l~~~l~s--R~~~i~~~~ 258 (368)
T 3uk6_A 201 LDIES-----------------FSFLNRALESDMAPVLIMATNRGITRIRGTSYQSP---HGIPIDLLD--RLLIVSTTP 258 (368)
T ss_dssp SBHHH-----------------HHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEE---TTCCHHHHT--TEEEEEECC
T ss_pred cChHH-----------------HHHHHHHhhCcCCCeeeeecccceeeeeccCCCCc---ccCCHHHHh--hccEEEecC
Confidence 9 431 1223344421111 012555555654432 346788888 777788887
Q ss_pred chHHH
Q 003038 382 GSLSL 386 (854)
Q Consensus 382 ~sl~~ 386 (854)
++...
T Consensus 259 ~~~~e 263 (368)
T 3uk6_A 259 YSEKD 263 (368)
T ss_dssp CCHHH
T ss_pred CCHHH
Confidence 76444
No 114
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.49 E-value=2e-07 Score=107.19 Aligned_cols=114 Identities=11% Similarity=0.167 Sum_probs=69.9
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCC-------CCceEE
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGS-------HNNFVS 690 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~-------~~~~i~ 690 (854)
..|+||++.+..+...+.+. ....+||+||+|||||.+|+.||+.+... ...|+.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~------------------~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRR------------------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCS------------------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred CCccCcHHHHHHHHHHHhcc------------------CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence 35899999999888776531 12367999999999999999999998542 345666
Q ss_pred EccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceee
Q 003038 691 IALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVS 770 (854)
Q Consensus 691 id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~ 770 (854)
+|++... . +.+ ......+.+.+......|+||| ...+.++.|+++|++|.+
T Consensus 242 l~~~~~~-----~-g~~----------e~~~~~~~~~~~~~~~~iLfiD----~~~~a~~~L~~~L~~g~v--------- 292 (468)
T 3pxg_A 242 LDMGTKY-----R-GEF----------EDRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLARGEL--------- 292 (468)
T ss_dssp C--------------------------CTTHHHHHHHHHTCCCCEEEEC----C--------CCCTTSSSC---------
T ss_pred eeCCccc-----c-chH----------HHHHHHHHHHHHhcCCeEEEEe----CchhHHHHHHHhhcCCCE---------
Confidence 6655100 0 000 0111245566667777899999 677899999999997744
Q ss_pred cCCeEEEEecCC
Q 003038 771 LGDAIVILSCES 782 (854)
Q Consensus 771 ~~~aIiIlTsn~ 782 (854)
+||.++|.
T Consensus 293 ----~vI~at~~ 300 (468)
T 3pxg_A 293 ----QCIGATTL 300 (468)
T ss_dssp ----EEEEECCT
T ss_pred ----EEEecCCH
Confidence 48887764
No 115
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.47 E-value=2.8e-07 Score=100.75 Aligned_cols=132 Identities=7% Similarity=-0.014 Sum_probs=84.1
Q ss_pred cHHHHHHHHHHhhc-----cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHH
Q 003038 211 RNEDVMYVIENLMS-----KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRV 285 (854)
Q Consensus 211 r~~ei~~v~~~L~r-----~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl 285 (854)
+++.++.+...+.. +..++++|+||||||||++++.++.+. +..++.++...+. ..|++...+
T Consensus 34 ~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~----------~~~~~~~~~~~~~--~~~~~~~~~ 101 (338)
T 3pfi_A 34 QESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM----------SANIKTTAAPMIE--KSGDLAAIL 101 (338)
T ss_dssp CHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT----------TCCEEEEEGGGCC--SHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh----------CCCeEEecchhcc--chhHHHHHH
Confidence 67777777766654 234689999999999999999999873 4567777766543 233333222
Q ss_pred HHHHHHHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcccC-----CC-----C------ceEE
Q 003038 286 EEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGI-----GE-----N------ARFW 348 (854)
Q Consensus 286 ~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-----~g-----~------g~l~ 348 (854)
... ..+.|||||||+.+ .... ..+-..+... ++ + ..++
T Consensus 102 -------~~~-~~~~vl~lDEi~~l~~~~~-----------------~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T 3pfi_A 102 -------TNL-SEGDILFIDEIHRLSPAIE-----------------EVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFT 156 (338)
T ss_dssp -------HTC-CTTCEEEEETGGGCCHHHH-----------------HHHHHHHHTSCC---------CCCCCCCCCCCE
T ss_pred -------Hhc-cCCCEEEEechhhcCHHHH-----------------HHHHHHHHhccchhhcccCccccceecCCCCeE
Confidence 222 45789999999998 4321 1122222100 00 0 1389
Q ss_pred EEEecCHHHHHHhhccCCchhhhhcc-CCCCCCCchHHH
Q 003038 349 LMGIATFQSYMRCKSGHPSLETLWSL-HPLTIPAGSLSL 386 (854)
Q Consensus 349 lIgatT~~ey~k~~~~~pale~~~~~-~~v~i~~~sl~~ 386 (854)
+|++|+.... .+|+|.+ || ..+.++.++...
T Consensus 157 ~i~atn~~~~-----l~~~L~~--R~~~~i~l~~~~~~e 188 (338)
T 3pfi_A 157 LIGATTRAGM-----LSNPLRD--RFGMQFRLEFYKDSE 188 (338)
T ss_dssp EEEEESCGGG-----SCHHHHT--TCSEEEECCCCCHHH
T ss_pred EEEeCCCccc-----cCHHHHh--hcCEEeeCCCcCHHH
Confidence 9999997442 5788887 67 667777766544
No 116
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.44 E-value=2e-07 Score=102.85 Aligned_cols=140 Identities=10% Similarity=0.062 Sum_probs=86.7
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhC------CCCceEEE
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFG------SHNNFVSI 691 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg------~~~~~i~i 691 (854)
..++|++..+..|...+.....+ .....++|+||+|+|||.+|+.+++.+.. ....++.+
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~--------------~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i 84 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRG--------------EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYV 84 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSS--------------CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC--------------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEE
Confidence 67899999998888877654221 22347899999999999999999998743 25678889
Q ss_pred ccccccCcCCCccccccccc----c---CCCCCCch---HHHHHHHHHcC-CCEEEEEecCCCCCHH--HHHHHHHhhhc
Q 003038 692 ALSSFSSTRADSTEDSRNKR----S---RDEQSCSY---IERFAEAVSNN-PHRVFLIEDVEQADYC--SQKGFKRAIES 758 (854)
Q Consensus 692 d~s~~~~~~~~s~e~~~~~r----l---~~~~g~g~---~e~L~eav~~~-p~~ViliDEieka~~~--v~~~Ll~~le~ 758 (854)
++....+ ....... + .+..+... .+.+.+.+... ...||+|||++.+... .++.|...++.
T Consensus 85 ~~~~~~~------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~ 158 (387)
T 2v1u_A 85 NARHRET------PYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRI 158 (387)
T ss_dssp ETTTSCS------HHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHG
T ss_pred ECCcCCC------HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhc
Confidence 8875541 0000000 0 01111112 22455555443 3569999999999876 77777777653
Q ss_pred CeEecCCCceeecCCeEEEEecCCC
Q 003038 759 GRIVTSSGDEVSLGDAIVILSCESF 783 (854)
Q Consensus 759 G~l~d~~G~~v~~~~aIiIlTsn~f 783 (854)
..-.. + -.+.+||+++|..
T Consensus 159 ~~~~~-----~-~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 159 NQELG-----D-RVWVSLVGITNSL 177 (387)
T ss_dssp GGCC-----------CEEEEECSCS
T ss_pred hhhcC-----C-CceEEEEEEECCC
Confidence 11000 0 2356788888754
No 117
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.44 E-value=6.9e-07 Score=93.68 Aligned_cols=138 Identities=14% Similarity=0.108 Sum_probs=85.3
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeCc
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLGD 306 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfide 306 (854)
.++++|+||||+|||++++.++..+. ..++.++...+...+.|+.+.++..+++.+... .+.++|+||
T Consensus 49 ~~g~ll~G~~G~GKTtl~~~i~~~~~----------~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~i~~~De 116 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLARAVAGEAR----------VPFITASGSDFVEMFVGVGAARVRDLFETAKRH--APCIVFIDE 116 (254)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHTT----------CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTS--SSEEEEEET
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC----------CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhc--CCeEEEehh
Confidence 45689999999999999999997642 456777777776667888888999999988753 579999999
Q ss_pred cccc-cccccccccccccchhhhHHHHHHHhhccc-CCCCceEEEEEecCHHHHHHhhccCCchhhhhccC-CCCCCCch
Q 003038 307 LEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG-IGENARFWLMGIATFQSYMRCKSGHPSLETLWSLH-PLTIPAGS 383 (854)
Q Consensus 307 l~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~~-~v~i~~~s 383 (854)
++.+ ........+ . .....+.+..+-..+.. ...+ .+.++++|+..+ ..||++-|.-||. .+.|+.|+
T Consensus 117 id~l~~~~~~~~~~-~--~~~~~~~~~~ll~~l~g~~~~~-~~i~~a~t~~p~-----~ld~~l~r~~rf~~~i~i~~p~ 187 (254)
T 1ixz_A 117 IDAVGRKRGSGVGG-G--NDEREQTLNQLLVEMDGFEKDT-AIVVMAATNRPD-----ILDPALLRPGRFDRQIAIDAPD 187 (254)
T ss_dssp HHHHHC------------CHHHHHHHHHHHHHHHTCCTTC-CEEEEEEESCGG-----GSCGGGGSTTSSCEEEECCSCC
T ss_pred hhhhhcccCccccc-c--chHHHHHHHHHHHHHhCCCCCC-CEEEEEccCCch-----hCCHHHcCCCcCCeEEeeCCcC
Confidence 9988 432210000 0 00111222333333321 1221 356666665543 2689998744442 45566665
Q ss_pred HH
Q 003038 384 LS 385 (854)
Q Consensus 384 l~ 385 (854)
..
T Consensus 188 ~~ 189 (254)
T 1ixz_A 188 VK 189 (254)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 118
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.42 E-value=4.9e-07 Score=100.10 Aligned_cols=151 Identities=15% Similarity=0.094 Sum_probs=90.3
Q ss_pred cHHHHHHHHHHhhc----cCcCCceeecCCCCCHHHHHHHHHHHHHcCCC-CcccCCceEEEccccccc-cc--c----h
Q 003038 211 RNEDVMYVIENLMS----KRKRNFVVVGECLASIEGVVRGVIDKIEKGDV-PEALRDVKCLPLSISSFR-HM--N----R 278 (854)
Q Consensus 211 r~~ei~~v~~~L~r----~~k~n~vLvGe~GvGKta~v~~la~~i~~~~v-p~~L~~~~~~~l~~~~l~-~~--~----r 278 (854)
|++++.++...|.+ +..++++|+||||+|||++++.++..+..... .....+..++.++..... .. . .
T Consensus 25 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~ 104 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLA 104 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHH
Confidence 99999999887764 23567999999999999999999988754200 000115678888765433 10 0 1
Q ss_pred HHH------------HHHHHHHHHHHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCc
Q 003038 279 VEV------------EQRVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENA 345 (854)
Q Consensus 279 ge~------------E~rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g 345 (854)
.++ ...+..+...+... +.||||||+|++ ...... . -+..|+... .
T Consensus 105 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~---~~vlilDEi~~l~~~~~~~-------------~--~l~~l~~~~-~-- 163 (384)
T 2qby_B 105 GKLTGFSVPKHGINLGEYIDKIKNGTRNI---RAIIYLDEVDTLVKRRGGD-------------I--VLYQLLRSD-A-- 163 (384)
T ss_dssp HHHHCSCCCSSSSCTHHHHHHHHHHHSSS---CEEEEEETTHHHHHSTTSH-------------H--HHHHHHTSS-S--
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHhccC---CCEEEEECHHHhccCCCCc-------------e--eHHHHhcCC-c--
Confidence 111 22234444444432 349999999999 542110 1 022344321 2
Q ss_pred eEEEEEecCHHHHHHhhccCCchhhhhcc-CCCCCCCchHHH
Q 003038 346 RFWLMGIATFQSYMRCKSGHPSLETLWSL-HPLTIPAGSLSL 386 (854)
Q Consensus 346 ~l~lIgatT~~ey~k~~~~~pale~~~~~-~~v~i~~~sl~~ 386 (854)
.+.+|++|+...+.. ..+|.+.+ +| +.+.++..+...
T Consensus 164 ~~~iI~~t~~~~~~~--~l~~~l~s--r~~~~i~l~~l~~~~ 201 (384)
T 2qby_B 164 NISVIMISNDINVRD--YMEPRVLS--SLGPSVIFKPYDAEQ 201 (384)
T ss_dssp CEEEEEECSSTTTTT--TSCHHHHH--TCCCEEEECCCCHHH
T ss_pred ceEEEEEECCCchHh--hhCHHHHh--cCCCeEEECCCCHHH
Confidence 599999998765432 24677766 54 356666655433
No 119
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.41 E-value=7.6e-08 Score=92.43 Aligned_cols=105 Identities=15% Similarity=0.143 Sum_probs=67.0
Q ss_pred cHHHHHHHHHHhhc--cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHH
Q 003038 211 RNEDVMYVIENLMS--KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEI 288 (854)
Q Consensus 211 r~~ei~~v~~~L~r--~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l 288 (854)
+++.++++.+.+.+ +...|++|+||||+|||.+|++++... + .++.++.+.+...+ ...+
T Consensus 9 ~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~----------~-~~~~~~~~~~~~~~-------~~~~ 70 (143)
T 3co5_A 9 NSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG----------T-PWVSPARVEYLIDM-------PMEL 70 (143)
T ss_dssp CCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT----------S-CEECCSSTTHHHHC-------HHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC----------C-CeEEechhhCChHh-------hhhH
Confidence 55666666665543 467899999999999999999887541 1 78888877654432 2333
Q ss_pred HHHHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHH
Q 003038 289 KNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQ 356 (854)
Q Consensus 289 ~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ 356 (854)
++.+ .+-+|||||++.+ .... ..+..++.. +.+..+++|++|+..
T Consensus 71 ~~~a-----~~~~l~lDei~~l~~~~q-----------------~~Ll~~l~~-~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 71 LQKA-----EGGVLYVGDIAQYSRNIQ-----------------TGITFIIGK-AERCRVRVIASCSYA 116 (143)
T ss_dssp HHHT-----TTSEEEEEECTTCCHHHH-----------------HHHHHHHHH-HTTTTCEEEEEEEEC
T ss_pred HHhC-----CCCeEEEeChHHCCHHHH-----------------HHHHHHHHh-CCCCCEEEEEecCCC
Confidence 3332 2448999999999 4321 123344421 111248999999854
No 120
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.41 E-value=8e-07 Score=96.87 Aligned_cols=139 Identities=10% Similarity=0.065 Sum_probs=88.3
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCC-------CCceEEE
Q 003038 619 KVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGS-------HNNFVSI 691 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~-------~~~~i~i 691 (854)
.++|.++-+..|...|..+..+ .+...++++||||+|||.+++.+++.+... .-.++++
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~--------------~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~I 86 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMS--------------SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHI 86 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT--------------TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHHhcC--------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEE
Confidence 3688888888888888876542 234588999999999999999999998532 1257888
Q ss_pred ccccccCcCCCccccccc-c----ccCC---CCCCch--HHHHHHHH--HcCCCEEEEEecCCCCCHHHHHHHHHhhhcC
Q 003038 692 ALSSFSSTRADSTEDSRN-K----RSRD---EQSCSY--IERFAEAV--SNNPHRVFLIEDVEQADYCSQKGFKRAIESG 759 (854)
Q Consensus 692 d~s~~~~~~~~s~e~~~~-~----rl~~---~~g~g~--~e~L~eav--~~~p~~ViliDEieka~~~v~~~Ll~~le~G 759 (854)
++..+.+ ...+ . .+.+ ..+... .+.+.+.+ ......||+|||||++. -|+.|+..++-.
T Consensus 87 Nc~~~~t-------~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~ 157 (318)
T 3te6_A 87 DALELAG-------MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWI 157 (318)
T ss_dssp ETTCCC---------HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHH
T ss_pred eccccCC-------HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcc
Confidence 8876652 1110 0 0101 111111 12233332 23456799999999998 577777777511
Q ss_pred eEecCCCceeecCCeEEEEecCCCCCCCC
Q 003038 760 RIVTSSGDEVSLGDAIVILSCESFSSRSR 788 (854)
Q Consensus 760 ~l~d~~G~~v~~~~aIiIlTsn~f~~~s~ 788 (854)
. ..-++.+||+++|..+-+.+
T Consensus 158 --~------~~~s~~~vI~i~n~~d~~~~ 178 (318)
T 3te6_A 158 --S------SKNSKLSIICVGGHNVTIRE 178 (318)
T ss_dssp --H------CSSCCEEEEEECCSSCCCHH
T ss_pred --c------ccCCcEEEEEEecCcccchh
Confidence 0 12346679999987765443
No 121
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.39 E-value=8.5e-07 Score=102.44 Aligned_cols=129 Identities=11% Similarity=0.093 Sum_probs=81.3
Q ss_pred CcccccHHHHHHHHHHHHHhhcC--CCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSG--TMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSS 695 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsg--l~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~ 695 (854)
..|+|+++++..|.+.+...+.- +.+-. -.-|.+ ++|+||+|+|||.+|++||..+ ...|+.++++.
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg-------~~ip~G-vLL~GppGtGKTtLaraIa~~~---~~~~i~i~g~~ 99 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMG-------ARIPKG-VLLVGPPGVGKTHLARAVAGEA---RVPFITASGSD 99 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTS-------CCCCSE-EEEECSSSSSHHHHHHHHHHHT---TCCEEEEEGGG
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhcc-------CCCCce-EEEECCCCCCHHHHHHHHHHHh---CCCEEEEehhH
Confidence 46899999999888887654320 00000 001233 8999999999999999999987 36789999887
Q ss_pred ccCcCCCccccccccccCCCCCCchHH-HHHHHH---HcCCCEEEEEecCCCCCH--------------HHHHHHHHhhh
Q 003038 696 FSSTRADSTEDSRNKRSRDEQSCSYIE-RFAEAV---SNNPHRVFLIEDVEQADY--------------CSQKGFKRAIE 757 (854)
Q Consensus 696 ~~~~~~~s~e~~~~~rl~~~~g~g~~e-~L~eav---~~~p~~ViliDEieka~~--------------~v~~~Ll~~le 757 (854)
+. +.+. |... .+...+ +....+|+||||||.+.. ...+.|+..|+
T Consensus 100 ~~-------~~~~----------g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ld 162 (499)
T 2dhr_A 100 FV-------EMFV----------GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD 162 (499)
T ss_dssp GT-------SSCT----------THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGG
T ss_pred HH-------Hhhh----------hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhc
Confidence 65 1110 2221 222222 223458999999987632 34566777666
Q ss_pred cCeEecCCCceeecCCeEEEEecCCC
Q 003038 758 SGRIVTSSGDEVSLGDAIVILSCESF 783 (854)
Q Consensus 758 ~G~l~d~~G~~v~~~~aIiIlTsn~f 783 (854)
.|.- -+..|+|.++|.-
T Consensus 163 g~~~---------~~~viviAatn~p 179 (499)
T 2dhr_A 163 GFEK---------DTAIVVMAATNRP 179 (499)
T ss_dssp GCCS---------SCCCEEEECCSCG
T ss_pred cccc---------CccEEEEEecCCh
Confidence 4421 2356788888753
No 122
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.38 E-value=6.4e-07 Score=110.47 Aligned_cols=111 Identities=14% Similarity=0.217 Sum_probs=65.3
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhC-------CCCceEE
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFG-------SHNNFVS 690 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg-------~~~~~i~ 690 (854)
..|+|+++.+..+...+.+. ....++|+||+|+|||.+|+.||+.+.. ....++.
T Consensus 170 d~viGr~~~i~~l~~~l~~~------------------~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 231 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRR------------------TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVS 231 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCS------------------SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEE
T ss_pred cccCCcHHHHHHHHHHHhcC------------------CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEE
Confidence 45799998888887766431 1235689999999999999999998843 2457788
Q ss_pred EccccccCcCCCccccccccccCCCCCC--chHH---HHHHHHHcC-CCEEEEEecCCCCC--------HHHHHHHHHhh
Q 003038 691 IALSSFSSTRADSTEDSRNKRSRDEQSC--SYIE---RFAEAVSNN-PHRVFLIEDVEQAD--------YCSQKGFKRAI 756 (854)
Q Consensus 691 id~s~~~~~~~~s~e~~~~~rl~~~~g~--g~~e---~L~eav~~~-p~~ViliDEieka~--------~~v~~~Ll~~l 756 (854)
++++.+.. +..| .+.+ .+.+.+... ...||||||++.+. .++++.|++++
T Consensus 232 l~~~~l~~----------------g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l 295 (854)
T 1qvr_A 232 LQMGSLLA----------------GAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL 295 (854)
T ss_dssp ECC---------------------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHH
T ss_pred eehHHhhc----------------cCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHH
Confidence 88765531 0111 2222 334444443 56899999999987 67888999999
Q ss_pred hcCeEe
Q 003038 757 ESGRIV 762 (854)
Q Consensus 757 e~G~l~ 762 (854)
+.|.+.
T Consensus 296 ~~~~i~ 301 (854)
T 1qvr_A 296 ARGELR 301 (854)
T ss_dssp HTTCCC
T ss_pred hCCCeE
Confidence 876543
No 123
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.38 E-value=6.2e-07 Score=109.11 Aligned_cols=61 Identities=21% Similarity=0.420 Sum_probs=51.5
Q ss_pred cChhHHHHHHHHHHHHHHHhhhCCcccccccccccccCHHHHHHHhccCChHHHHHHHhCCCHHHHHHHHHHHh
Q 003038 94 QFPTISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIELEQLIISILDDPSVSRVMREAGFSSTQVKSNVEQAV 167 (854)
Q Consensus 94 ~~p~~s~~L~~al~~A~~~~~~~~~~~~~~~~~~~~I~~eHLLLALL~d~~~~~iL~~~Gi~~~~l~~~v~~~l 167 (854)
+++.+.++|..|...|...++ . +|+++|||+|||+++.+.++|+.+|++.+.++..+...+
T Consensus 2 ~t~~a~~~l~~A~~~A~~~~h----~---------~i~~eHLLlaLl~~~~~~~iL~~~gvd~~~l~~~l~~~l 62 (758)
T 1r6b_X 2 LNQELELSLNMAFARAREHRH----E---------FMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFI 62 (758)
T ss_dssp BCHHHHHHHHHHHHHHHHTTB----S---------EECHHHHHHHHTTSHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCC----C---------CccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 467788888888888887632 2 599999999999988889999999999999998888654
No 124
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.36 E-value=3.2e-07 Score=99.94 Aligned_cols=127 Identities=11% Similarity=0.093 Sum_probs=78.3
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHH-HHHHHHHHhhhCCCeEEEe
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRV-EEIKNLVRSCLGRGIVLNL 304 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl-~~l~~~~~~~~~~~~ILfi 304 (854)
..++++|+||||+|||++++.++..+... +..++.++...+...+.+.+.... ..+..... .+.||||
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~-------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~vL~i 104 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR-------GYRVIYSSADDFAQAMVEHLKKGTINEFRNMYK----SVDLLLL 104 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT-------TCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHH----TCSEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC-------CCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhc----CCCEEEE
Confidence 34789999999999999999999987653 567888887777655555544322 22222222 3679999
Q ss_pred Cccccc-cccccccccccccchhhhHHHHHHHhhccc--CCCCceEEEEEecC-HHHHHHhhccCCchhhhhcc---CCC
Q 003038 305 GDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG--IGENARFWLMGIAT-FQSYMRCKSGHPSLETLWSL---HPL 377 (854)
Q Consensus 305 del~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~--~~g~g~l~lIgatT-~~ey~k~~~~~pale~~~~~---~~v 377 (854)
||+|.+ +... ...++-.++.. ..+ ...+|+++. +.++ ...++.|.+ || ..+
T Consensus 105 DEi~~l~~~~~---------------~~~~l~~~l~~~~~~~--~~iii~~~~~~~~l---~~l~~~L~s--R~~~~~~i 162 (324)
T 1l8q_A 105 DDVQFLSGKER---------------TQIEFFHIFNTLYLLE--KQIILASDRHPQKL---DGVSDRLVS--RFEGGILV 162 (324)
T ss_dssp ECGGGGTTCHH---------------HHHHHHHHHHHHHHTT--CEEEEEESSCGGGC---TTSCHHHHH--HHHTSEEE
T ss_pred cCcccccCChH---------------HHHHHHHHHHHHHHCC--CeEEEEecCChHHH---HHhhhHhhh--cccCceEE
Confidence 999999 5321 12233344321 223 244554443 2222 246788887 55 457
Q ss_pred CCCCchHHH
Q 003038 378 TIPAGSLSL 386 (854)
Q Consensus 378 ~i~~~sl~~ 386 (854)
.+++ +...
T Consensus 163 ~l~~-~~~e 170 (324)
T 1l8q_A 163 EIEL-DNKT 170 (324)
T ss_dssp ECCC-CHHH
T ss_pred EeCC-CHHH
Confidence 7777 6544
No 125
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.35 E-value=1.1e-06 Score=94.97 Aligned_cols=133 Identities=10% Similarity=0.033 Sum_probs=82.6
Q ss_pred cHHHHHHHHHHhhc-----cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHH
Q 003038 211 RNEDVMYVIENLMS-----KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRV 285 (854)
Q Consensus 211 r~~ei~~v~~~L~r-----~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl 285 (854)
+++.++++...+.+ +..++++|+||||+|||++++.++..+ +..++.++...+.. .+
T Consensus 17 ~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~----------~~~~~~~~~~~~~~--~~------ 78 (324)
T 1hqc_A 17 QERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL----------GVNLRVTSGPAIEK--PG------ 78 (324)
T ss_dssp CHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH----------TCCEEEECTTTCCS--HH------
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEeccccCC--hH------
Confidence 77777777666653 244789999999999999999999875 24566666554432 22
Q ss_pred HHHHHHHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcccC-----CCC-----------ceEE
Q 003038 286 EEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGI-----GEN-----------ARFW 348 (854)
Q Consensus 286 ~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-----~g~-----------g~l~ 348 (854)
++...+......+.+|||||++.+ .... ..+.+++... .+. ..++
T Consensus 79 -~l~~~l~~~~~~~~~l~lDEi~~l~~~~~-----------------~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (324)
T 1hqc_A 79 -DLAAILANSLEEGDILFIDEIHRLSRQAE-----------------EHLYPAMEDFVMDIVIGQGPAARTIRLELPRFT 140 (324)
T ss_dssp -HHHHHHTTTCCTTCEEEETTTTSCCHHHH-----------------HHHHHHHHHSEEEECCSSSSSCCCEEEECCCCE
T ss_pred -HHHHHHHHhccCCCEEEEECCcccccchH-----------------HHHHHHHHhhhhHHhccccccccccccCCCCEE
Confidence 233333331135779999999999 4321 1122222100 000 1378
Q ss_pred EEEecCHHHHHHhhccCCchhhhhcc-CCCCCCCchHHH
Q 003038 349 LMGIATFQSYMRCKSGHPSLETLWSL-HPLTIPAGSLSL 386 (854)
Q Consensus 349 lIgatT~~ey~k~~~~~pale~~~~~-~~v~i~~~sl~~ 386 (854)
+|++|+... ..+++|.+ || +.+.++.++...
T Consensus 141 ~i~~t~~~~-----~~~~~l~~--R~~~~i~l~~~~~~e 172 (324)
T 1hqc_A 141 LIGATTRPG-----LITAPLLS--RFGIVEHLEYYTPEE 172 (324)
T ss_dssp EEEEESCCS-----SCSCSTTT--TCSCEEECCCCCHHH
T ss_pred EEEeCCCcc-----cCCHHHHh--cccEEEecCCCCHHH
Confidence 999998652 34677777 77 467777766544
No 126
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.34 E-value=1.8e-06 Score=87.84 Aligned_cols=144 Identities=11% Similarity=0.033 Sum_probs=84.6
Q ss_pred cHHHHHHHHHHhhccCc-CCceeecCCCCCHHHHHHHHHHHHHcCCCCccc--------------CCceEEEcccccccc
Q 003038 211 RNEDVMYVIENLMSKRK-RNFVVVGECLASIEGVVRGVIDKIEKGDVPEAL--------------RDVKCLPLSISSFRH 275 (854)
Q Consensus 211 r~~ei~~v~~~L~r~~k-~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L--------------~~~~~~~l~~~~l~~ 275 (854)
|+++++++...+...+. ++++|+||||+|||++++.++..+......... ....++.++...
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 104 (250)
T 1njg_A 28 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS--- 104 (250)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTC---
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcc---
Confidence 89999999998876543 458999999999999999999887643211000 001222222111
Q ss_pred cchHHHHHHHHHHHHHHHhhh--CCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEe
Q 003038 276 MNRVEVEQRVEEIKNLVRSCL--GRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGI 352 (854)
Q Consensus 276 ~~rge~E~rl~~l~~~~~~~~--~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIga 352 (854)
......+.++++.+.... +++.||||||+|++ .. ....+..++..... .+.+|.+
T Consensus 105 ---~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~-----------------~~~~l~~~l~~~~~--~~~~i~~ 162 (250)
T 1njg_A 105 ---RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH-----------------SFNALLKTLEEPPE--HVKFLLA 162 (250)
T ss_dssp ---GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHH-----------------HHHHHHHHHHSCCT--TEEEEEE
T ss_pred ---cccHHHHHHHHHHhhhchhcCCceEEEEECcccccHH-----------------HHHHHHHHHhcCCC--ceEEEEE
Confidence 111233455555543211 35799999999998 33 12234445522122 4888888
Q ss_pred cCHHHHHHhhccCCchhhhhccCCCCCCCchHHH
Q 003038 353 ATFQSYMRCKSGHPSLETLWSLHPLTIPAGSLSL 386 (854)
Q Consensus 353 tT~~ey~k~~~~~pale~~~~~~~v~i~~~sl~~ 386 (854)
|+... ...+++.+ ++..+.++..+...
T Consensus 163 t~~~~-----~~~~~l~~--r~~~i~l~~l~~~e 189 (250)
T 1njg_A 163 TTDPQ-----KLPVTILS--RCLQFHLKALDVEQ 189 (250)
T ss_dssp ESCGG-----GSCHHHHT--TSEEEECCCCCHHH
T ss_pred eCChH-----hCCHHHHH--HhhhccCCCCCHHH
Confidence 76432 23556666 56666676655433
No 127
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.32 E-value=4.3e-07 Score=95.84 Aligned_cols=91 Identities=12% Similarity=0.104 Sum_probs=55.3
Q ss_pred cHHHHHHHHHHhhc--cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccccccccc---------chH
Q 003038 211 RNEDVMYVIENLMS--KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHM---------NRV 279 (854)
Q Consensus 211 r~~ei~~v~~~L~r--~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~---------~rg 279 (854)
++..++++++.+.+ +...+++|+||||||||.+++.++..... .+..++.++++.+... .+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~-------~~~~~~~v~~~~~~~~~~~~~l~g~~~~ 83 (265)
T 2bjv_A 11 EANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSR-------WQGPFISLNCAALNENLLDSELFGHEAG 83 (265)
T ss_dssp CCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTT-------TTSCEEEEEGGGSCHHHHHHHHHCCC--
T ss_pred CCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCc-------cCCCeEEEecCCCChhHHHHHhcCCccc
Confidence 55666666665543 46789999999999999999999976432 2457888887765321 111
Q ss_pred HHHHHHHHHHHHHHhhhCCCeEEEeCccccc
Q 003038 280 EVEQRVEEIKNLVRSCLGRGIVLNLGDLEWA 310 (854)
Q Consensus 280 e~E~rl~~l~~~~~~~~~~~~ILfidel~~l 310 (854)
.+..........+... .+.+|||||++.+
T Consensus 84 ~~~g~~~~~~~~l~~a--~~~~l~lDEi~~l 112 (265)
T 2bjv_A 84 AFTGAQKRHPGRFERA--DGGTLFLDELATA 112 (265)
T ss_dssp -------CCCCHHHHT--TTSEEEEESGGGS
T ss_pred ccccccccccchhhhc--CCcEEEEechHhc
Confidence 1111111001112222 2458999999999
No 128
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.32 E-value=3.2e-06 Score=92.73 Aligned_cols=104 Identities=13% Similarity=0.113 Sum_probs=71.5
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccC
Q 003038 619 KVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSS 698 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~ 698 (854)
.++||+.++..|...|...+. + .++...++|+||+|+|||++|++||..+ + ..+.....+.+.
T Consensus 26 ~~~g~~~~~~~l~~~i~~~~~----~---------~~~~~~~ll~Gp~G~GKTTLa~~ia~~l-~--~~~~~~sg~~~~- 88 (334)
T 1in4_A 26 EFIGQENVKKKLSLALEAAKM----R---------GEVLDHVLLAGPPGLGKTTLAHIIASEL-Q--TNIHVTSGPVLV- 88 (334)
T ss_dssp GCCSCHHHHHHHHHHHHHHHH----H---------TCCCCCEEEESSTTSSHHHHHHHHHHHH-T--CCEEEEETTTCC-
T ss_pred HccCcHHHHHHHHHHHHHHHh----c---------CCCCCeEEEECCCCCcHHHHHHHHHHHh-C--CCEEEEechHhc-
Confidence 468999999999888876432 1 1234578999999999999999999988 2 122222211110
Q ss_pred cCCCccccccccccCCCCCCchHHHHHHHHH-cCCCEEEEEecCCCCCHHHHHHHHHhhhcCe
Q 003038 699 TRADSTEDSRNKRSRDEQSCSYIERFAEAVS-NNPHRVFLIEDVEQADYCSQKGFKRAIESGR 760 (854)
Q Consensus 699 ~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~-~~p~~ViliDEieka~~~v~~~Ll~~le~G~ 760 (854)
.+ ..+...+. .....|++|||++.+.+.+++.|+..++++.
T Consensus 89 -------------------~~--~~l~~~~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~ 130 (334)
T 1in4_A 89 -------------------KQ--GDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQ 130 (334)
T ss_dssp -------------------SH--HHHHHHHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSC
T ss_pred -------------------CH--HHHHHHHHHccCCCEEEEcchhhcCHHHHHHHHHHHHhcc
Confidence 01 11222222 2356899999999999999999999998764
No 129
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.32 E-value=8e-07 Score=96.58 Aligned_cols=137 Identities=9% Similarity=0.007 Sum_probs=89.3
Q ss_pred CCCCC--cHHHHHHHHHHhhccCcCCceee-cCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHH
Q 003038 206 SLDPI--RNEDVMYVIENLMSKRKRNFVVV-GECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVE 282 (854)
Q Consensus 206 ~ldpv--r~~ei~~v~~~L~r~~k~n~vLv-Ge~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E 282 (854)
.++.+ +++.++.+...+.+.+..+++|+ ||||+|||++++.++..+ +..++.++.+... .
T Consensus 24 ~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l----------~~~~~~i~~~~~~-------~ 86 (324)
T 3u61_B 24 TIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV----------NADMMFVNGSDCK-------I 86 (324)
T ss_dssp STTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT----------TEEEEEEETTTCC-------H
T ss_pred CHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh----------CCCEEEEcccccC-------H
Confidence 34444 77778888888776666676555 569999999999999875 4678888765432 2
Q ss_pred HHHHHHHHHHHhhh---CCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHH
Q 003038 283 QRVEEIKNLVRSCL---GRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSY 358 (854)
Q Consensus 283 ~rl~~l~~~~~~~~---~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey 358 (854)
..+++++....... +.+.||||||+|.+ +.. ....+..++....+ .+.+|++|+...
T Consensus 87 ~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~----------------~~~~L~~~le~~~~--~~~iI~~~n~~~- 147 (324)
T 3u61_B 87 DFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAE----------------SQRHLRSFMEAYSS--NCSIIITANNID- 147 (324)
T ss_dssp HHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHH----------------HHHHHHHHHHHHGG--GCEEEEEESSGG-
T ss_pred HHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHH----------------HHHHHHHHHHhCCC--CcEEEEEeCCcc-
Confidence 23334333332211 35789999999999 432 12234444421112 478888887643
Q ss_pred HHhhccCCchhhhhccCCCCCCCchH
Q 003038 359 MRCKSGHPSLETLWSLHPLTIPAGSL 384 (854)
Q Consensus 359 ~k~~~~~pale~~~~~~~v~i~~~sl 384 (854)
..+|+|.+ ||+.+.++.++.
T Consensus 148 ----~l~~~l~s--R~~~i~~~~~~~ 167 (324)
T 3u61_B 148 ----GIIKPLQS--RCRVITFGQPTD 167 (324)
T ss_dssp ----GSCTTHHH--HSEEEECCCCCH
T ss_pred ----ccCHHHHh--hCcEEEeCCCCH
Confidence 46788988 777888877763
No 130
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.32 E-value=9.1e-07 Score=90.78 Aligned_cols=78 Identities=10% Similarity=0.087 Sum_probs=57.5
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEE
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFL 737 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~Vil 737 (854)
..++|+||+|+|||++|+++++.+......++.++++++. ... ...+ +.+ ....||+
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~-------~~~--~~~~------------~~~--~~~~vli 109 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHA-------SIS--TALL------------EGL--EQFDLIC 109 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGG-------GSC--GGGG------------TTG--GGSSEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH-------HHH--HHHH------------Hhc--cCCCEEE
Confidence 4789999999999999999999987666778888877654 111 0000 001 2357999
Q ss_pred EecCCCCCHHH--HHHHHHhhhc
Q 003038 738 IEDVEQADYCS--QKGFKRAIES 758 (854)
Q Consensus 738 iDEieka~~~v--~~~Ll~~le~ 758 (854)
|||++.++... ++.|+..++.
T Consensus 110 iDe~~~~~~~~~~~~~l~~~l~~ 132 (242)
T 3bos_A 110 IDDVDAVAGHPLWEEAIFDLYNR 132 (242)
T ss_dssp EETGGGGTTCHHHHHHHHHHHHH
T ss_pred EeccccccCCHHHHHHHHHHHHH
Confidence 99999998766 8888888764
No 131
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.31 E-value=5.9e-07 Score=96.32 Aligned_cols=155 Identities=12% Similarity=0.110 Sum_probs=91.9
Q ss_pred cHHHHHHHHHHhhc--------------cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccc-
Q 003038 211 RNEDVMYVIENLMS--------------KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRH- 275 (854)
Q Consensus 211 r~~ei~~v~~~L~r--------------~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~- 275 (854)
.++.++.+...+.+ +..++++|+||||||||++++.++..+ +..++.++.+.+..
T Consensus 20 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l----------~~~~~~i~~~~~~~~ 89 (310)
T 1ofh_A 20 QADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA----------NAPFIKVEATKFTEV 89 (310)
T ss_dssp CHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH----------TCCEEEEEGGGGSSC
T ss_pred hHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEcchhcccC
Confidence 55666666666554 356789999999999999999999876 34788888887765
Q ss_pred cchHH-HHHHHHHHHHHH----HhhhCCCeEEEeCccccc-cccccccccccccchhhhHH-HHHHHhhcccCC------
Q 003038 276 MNRVE-VEQRVEEIKNLV----RSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHI-IMEIGKLVCGIG------ 342 (854)
Q Consensus 276 ~~rge-~E~rl~~l~~~~----~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~------ 342 (854)
+|.|. .+..+++++... ... ..+.||||||++.+ ...... + +.....+ ...+-.++....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vl~iDEi~~l~~~~~~~--~----~~~~~~~~~~~Ll~~le~~~~~~~~~ 162 (310)
T 1ofh_A 90 GYVGKEVDSIIRDLTDSAGGAIDAV-EQNGIVFIDEIDKICKKGEYS--G----ADVSREGVQRDLLPLVEGSTVSTKHG 162 (310)
T ss_dssp CSGGGSTTHHHHHHHHTTTTCHHHH-HHHCEEEEECGGGGSCCSSCC--S----SHHHHHHHHHHHHHHHHCCEEEETTE
T ss_pred CccCccHHHHHHHHHHHhhHHHhhc-cCCCEEEEEChhhcCcccccc--c----cchhHHHHHHHHHHHhcCCeEecccc
Confidence 45543 344566665522 211 13579999999999 443211 0 1111111 122333332100
Q ss_pred --CCceEEEEEecCHHHHHHhhccCCchhhhhccC-CCCCCCchHH
Q 003038 343 --ENARFWLMGIATFQSYMRCKSGHPSLETLWSLH-PLTIPAGSLS 385 (854)
Q Consensus 343 --g~g~l~lIgatT~~ey~k~~~~~pale~~~~~~-~v~i~~~sl~ 385 (854)
..+.+.+|+++++.... -...+|+|.+ ||. .|.++.++..
T Consensus 163 ~~~~~~~~~i~~~~~~~~~-~~~l~~~l~~--R~~~~i~~~~~~~~ 205 (310)
T 1ofh_A 163 MVKTDHILFIASGAFQVAR-PSDLIPELQG--RLPIRVELTALSAA 205 (310)
T ss_dssp EEECTTCEEEEEECCSSSC-GGGSCHHHHH--TCCEEEECCCCCHH
T ss_pred cccCCcEEEEEcCCcccCC-cccCCHHHHh--hCCceEEcCCcCHH
Confidence 01248899987432111 1246788888 775 4777766643
No 132
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.31 E-value=1.9e-06 Score=91.76 Aligned_cols=139 Identities=14% Similarity=0.090 Sum_probs=85.9
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeCc
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLGD 306 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfide 306 (854)
.++++|+||||+|||++++.++..+. ..++.++...+...+.|+.+.++..+++.+... .+.|+|+||
T Consensus 73 ~~gvll~Gp~GtGKTtl~~~i~~~~~----------~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~i~~iDe 140 (278)
T 1iy2_A 73 PKGVLLVGPPGVGKTHLARAVAGEAR----------VPFITASGSDFVEMFVGVGAARVRDLFETAKRH--APCIVFIDE 140 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHTT----------CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTS--CSEEEEEET
T ss_pred CCeEEEECCCcChHHHHHHHHHHHcC----------CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhc--CCcEEehhh
Confidence 34589999999999999999997642 457777777776667788888999999988754 588999999
Q ss_pred cccc-cccccccccccccchhhhHHHHHHHhhccc-CCCCceEEEEEecCHHHHHHhhccCCchhhhhcc-CCCCCCCch
Q 003038 307 LEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG-IGENARFWLMGIATFQSYMRCKSGHPSLETLWSL-HPLTIPAGS 383 (854)
Q Consensus 307 l~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~-~~v~i~~~s 383 (854)
++.+ ........+ ......+.+..+-..+.. ...+ .+.++++|+..+ ..||++-|.-+| ..|.|+.|+
T Consensus 141 id~l~~~~~~~~~~---~~~~~~~~~~~ll~~lsgg~~~~-~~i~~a~t~~p~-----~ld~~l~r~~rf~~~i~i~~p~ 211 (278)
T 1iy2_A 141 IDAVGRKRGSGVGG---GNDEREQTLNQLLVEMDGFEKDT-AIVVMAATNRPD-----ILDPALLRPGRFDRQIAIDAPD 211 (278)
T ss_dssp HHHHHCC-----------CHHHHHHHHHHHHHHTTCCTTC-CEEEEEEESCTT-----SSCHHHHSTTSSCCEEECCCCC
T ss_pred hHhhhcccccccCC---cchHHHHHHHHHHHHHhCCCCCC-CEEEEEecCCch-----hCCHhHcCCCcCCeEEEeCCcC
Confidence 9988 432210000 000011222222222321 1111 366666666543 368888774344 245666666
Q ss_pred HHH
Q 003038 384 LSL 386 (854)
Q Consensus 384 l~~ 386 (854)
...
T Consensus 212 ~~~ 214 (278)
T 1iy2_A 212 VKG 214 (278)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 133
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=98.30 E-value=1.3e-06 Score=84.29 Aligned_cols=65 Identities=11% Similarity=0.099 Sum_probs=59.9
Q ss_pred HhhhHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCcHHHHHHHHcCCChhhHHHHHHHHHHHh
Q 003038 10 QGLTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALELCFNVAL 77 (854)
Q Consensus 10 ~~fT~~a~~aL~~A~~~A~~~gh~~Vt~eHLLlaLL~~~~s~l~~iL~~~gvd~~~~~aL~~~l~~~L 77 (854)
..||+.+.++|+.|..+|+++||.+|+++|||+||+.++++.+.++|.++|+++ +.|+..+...+
T Consensus 80 ~~~s~~~~~vL~~A~~~a~~~~~~~i~~eHlLlall~~~~~~a~~iL~~~gv~~---~~l~~~l~~~~ 144 (146)
T 3fh2_A 80 IPFTPRAKKVLELSLREGLQMGHKYIGTEFLLLGLIREGEGVAAQVLVKLGADL---PRVRQQVIQLL 144 (146)
T ss_dssp CCBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCSSHHHHHHHHHTCCH---HHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHhCCCcHHHHHHHHcCCCH---HHHHHHHHHHh
Confidence 369999999999999999999999999999999999998889999999999987 78888887655
No 134
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.29 E-value=2e-07 Score=109.17 Aligned_cols=127 Identities=9% Similarity=0.023 Sum_probs=74.8
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccc---------cchHHHHHHHHHHHHHHHhhhC
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRH---------MNRVEVEQRVEEIKNLVRSCLG 297 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~---------~~rge~E~rl~~l~~~~~~~~~ 297 (854)
..+++|+||||||||++++.++..+ +..++.++++.+.. .|.|....++..++..+...
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l----------~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~-- 175 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSL----------GRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKL-- 175 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHH----------TCEEEEECCCC--------------------CHHHHHHTTCSS--
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc----------CCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhcc--
Confidence 5579999999999999999999876 33566666554322 36677777777777665543
Q ss_pred CCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcccC---------CCC----ceEEEEEecCHHHHHHhhc
Q 003038 298 RGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGI---------GEN----ARFWLMGIATFQSYMRCKS 363 (854)
Q Consensus 298 ~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~---------~g~----g~l~lIgatT~~ey~k~~~ 363 (854)
+.||||||++.+ ...... ....+-.+|.+. .+. +.+.+|+||+... .
T Consensus 176 -~~vl~lDEid~l~~~~~~~-------------~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~-----~ 236 (543)
T 3m6a_A 176 -NPVFLLDEIDKMSSDFRGD-------------PSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLA-----T 236 (543)
T ss_dssp -SEEEEEEESSSCC----------------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTT-----T
T ss_pred -CCEEEEhhhhhhhhhhccC-------------HHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccc-----c
Confidence 349999999999 432210 111122222110 000 3588998887643 5
Q ss_pred cCCchhhhhccCCCCCCCchHHH
Q 003038 364 GHPSLETLWSLHPLTIPAGSLSL 386 (854)
Q Consensus 364 ~~pale~~~~~~~v~i~~~sl~~ 386 (854)
.+|+|.+ ||+.|.++.++...
T Consensus 237 l~~aL~~--R~~vi~~~~~~~~e 257 (543)
T 3m6a_A 237 IPGPLRD--RMEIINIAGYTEIE 257 (543)
T ss_dssp SCHHHHH--HEEEEECCCCCHHH
T ss_pred CCHHHHh--hcceeeeCCCCHHH
Confidence 6799999 77778888776543
No 135
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.29 E-value=1.1e-06 Score=107.09 Aligned_cols=114 Identities=12% Similarity=0.208 Sum_probs=69.3
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCC-------CCceEE
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGS-------HNNFVS 690 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~-------~~~~i~ 690 (854)
..|+||++.+..+...+.+. ....+||+||+|||||.+|++||+.+... ...++.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~------------------~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRR------------------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCS------------------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred CCccCchHHHHHHHHHHhCC------------------CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEE
Confidence 35899999999888876531 12368999999999999999999998542 234444
Q ss_pred EccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCCCceee
Q 003038 691 IALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSSGDEVS 770 (854)
Q Consensus 691 id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~G~~v~ 770 (854)
+|+. . ++ .+... .....+.+.+......||||| ...+.++.|+++++.|.+
T Consensus 242 ~~~g--~--------~~-----~G~~e-~~l~~~~~~~~~~~~~iLfiD----~~~~~~~~L~~~l~~~~v--------- 292 (758)
T 3pxi_A 242 LDMG--T--------KY-----RGEFE-DRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLARGEL--------- 292 (758)
T ss_dssp C-------------------------C-TTHHHHHHHHHTCCCCEEEEC----C--------CCCTTSSSC---------
T ss_pred eccc--c--------cc-----cchHH-HHHHHHHHHHHhcCCEEEEEc----CchhHHHHHHHHHhcCCE---------
Confidence 4440 0 00 00000 111245555666777899999 677899999999997644
Q ss_pred cCCeEEEEecCC
Q 003038 771 LGDAIVILSCES 782 (854)
Q Consensus 771 ~~~aIiIlTsn~ 782 (854)
++|.++|.
T Consensus 293 ----~~I~at~~ 300 (758)
T 3pxi_A 293 ----QCIGATTL 300 (758)
T ss_dssp ----EEEEECCT
T ss_pred ----EEEeCCCh
Confidence 48888874
No 136
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.28 E-value=2.4e-06 Score=84.69 Aligned_cols=101 Identities=13% Similarity=0.081 Sum_probs=61.8
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHh-CCCCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEE
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVF-GSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVF 736 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lf-g~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~Vi 736 (854)
..++|+||+|+|||+++++|+..+. .....++.+++.++. +... ...... .. +.+.+.+. ...|+
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~-------~~~~--~~~~~~--~~-~~~~~~~~--~~~ll 104 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLI-------FRLK--HLMDEG--KD-TKFLKTVL--NSPVL 104 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHH-------HHHH--HHHHHT--CC-SHHHHHHH--TCSEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHH-------HHHH--HHhcCc--hH-HHHHHHhc--CCCEE
Confidence 4789999999999999999999885 223344555554433 1100 000000 00 02333333 34699
Q ss_pred EEecCC--CCCHHHHHHHHHhhhcCeEecCCCceeecCCeEEEEecCC
Q 003038 737 LIEDVE--QADYCSQKGFKRAIESGRIVTSSGDEVSLGDAIVILSCES 782 (854)
Q Consensus 737 liDEie--ka~~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn~ 782 (854)
+|||++ ..++..+..|.+.++.-. -.+..+|+|||.
T Consensus 105 ilDE~~~~~~~~~~~~~l~~ll~~~~----------~~~~~ii~tsn~ 142 (180)
T 3ec2_A 105 VLDDLGSERLSDWQRELISYIITYRY----------NNLKSTIITTNY 142 (180)
T ss_dssp EEETCSSSCCCHHHHHHHHHHHHHHH----------HTTCEEEEECCC
T ss_pred EEeCCCCCcCCHHHHHHHHHHHHHHH----------HcCCCEEEEcCC
Confidence 999998 678888888888886411 123457778873
No 137
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.27 E-value=6.5e-07 Score=98.61 Aligned_cols=138 Identities=14% Similarity=0.117 Sum_probs=85.8
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCC---CCceEEEccc
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGS---HNNFVSIALS 694 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~---~~~~i~id~s 694 (854)
..++|+++.+..|...+.....+ ++...++|+||+|+|||++++.+++.+... ...++.+++.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~--------------~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~ 85 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYRE--------------EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR 85 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGT--------------CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC--------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 56799998888887776654321 223478999999999999999999987432 4577888876
Q ss_pred cccCcCCCccccccccccCC----CCCCchH---HHHHHHHHcCC-CEEEEEecCCCCC----HHHHHHHHHhhhcCeEe
Q 003038 695 SFSSTRADSTEDSRNKRSRD----EQSCSYI---ERFAEAVSNNP-HRVFLIEDVEQAD----YCSQKGFKRAIESGRIV 762 (854)
Q Consensus 695 ~~~~~~~~s~e~~~~~rl~~----~~g~g~~---e~L~eav~~~p-~~ViliDEieka~----~~v~~~Ll~~le~G~l~ 762 (854)
....... --..+...++ ..+.... +.+.+.+.... ..||+|||++.+. .+++..|++.++..
T Consensus 86 ~~~~~~~---~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~--- 159 (386)
T 2qby_A 86 QIDTPYR---VLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV--- 159 (386)
T ss_dssp HHCSHHH---HHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC---
T ss_pred CCCCHHH---HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc---
Confidence 4431000 0000000010 1111122 24566666543 6899999999875 66778888888643
Q ss_pred cCCCceeecCCeEEEEecCC
Q 003038 763 TSSGDEVSLGDAIVILSCES 782 (854)
Q Consensus 763 d~~G~~v~~~~aIiIlTsn~ 782 (854)
.-.+.+||++++.
T Consensus 160 -------~~~~~~~I~~~~~ 172 (386)
T 2qby_A 160 -------NKSKISFIGITND 172 (386)
T ss_dssp -------CC--EEEEEEESC
T ss_pred -------CCCeEEEEEEECC
Confidence 1135668888864
No 138
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.27 E-value=8.1e-07 Score=103.37 Aligned_cols=139 Identities=9% Similarity=0.005 Sum_probs=85.6
Q ss_pred cHHHHHHHHHHhhcc-----------------CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccc
Q 003038 211 RNEDVMYVIENLMSK-----------------RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSF 273 (854)
Q Consensus 211 r~~ei~~v~~~L~r~-----------------~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l 273 (854)
+++.++.+.+.|..- ..++++|+||||+|||++|+.+|..+ +..++.++.+.+
T Consensus 44 ~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----------~~~~i~in~s~~ 113 (516)
T 1sxj_A 44 NKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----------GYDILEQNASDV 113 (516)
T ss_dssp CHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----------TCEEEEECTTSC
T ss_pred CHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----------CCCEEEEeCCCc
Confidence 788888888887651 34789999999999999999999875 568888888766
Q ss_pred cccchHHHHHHH---------HHHHHHH----HhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcc
Q 003038 274 RHMNRVEVEQRV---------EEIKNLV----RSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVC 339 (854)
Q Consensus 274 ~~~~rge~E~rl---------~~l~~~~----~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 339 (854)
...... +..+ ..++..+ ... +.+.||||||++.+ ..... +...+.+++.
T Consensus 114 ~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~vliIDEid~l~~~~~~--------------~l~~L~~~l~ 176 (516)
T 1sxj_A 114 RSKTLL--NAGVKNALDNMSVVGYFKHNEEAQNLN-GKHFVIIMDEVDGMSGGDRG--------------GVGQLAQFCR 176 (516)
T ss_dssp CCHHHH--HHTGGGGTTBCCSTTTTTC----CCSS-TTSEEEEECSGGGCCTTSTT--------------HHHHHHHHHH
T ss_pred chHHHH--HHHHHHHhccccHHHHHhhhhhhhhcc-CCCeEEEEECCCccchhhHH--------------HHHHHHHHHH
Confidence 543211 1111 1112211 111 45899999999999 53221 3344556664
Q ss_pred cCCCCceEEEEEecCHHHHHHhhccCCchhhhhccCCCCCCCchHHH
Q 003038 340 GIGENARFWLMGIATFQSYMRCKSGHPSLETLWSLHPLTIPAGSLSL 386 (854)
Q Consensus 340 ~~~g~g~l~lIgatT~~ey~k~~~~~pale~~~~~~~v~i~~~sl~~ 386 (854)
.... .+.+|++++... .-+.|.+ +.+.+.++.++...
T Consensus 177 ~~~~--~iIli~~~~~~~------~l~~l~~--r~~~i~f~~~~~~~ 213 (516)
T 1sxj_A 177 KTST--PLILICNERNLP------KMRPFDR--VCLDIQFRRPDANS 213 (516)
T ss_dssp HCSS--CEEEEESCTTSS------TTGGGTT--TSEEEECCCCCHHH
T ss_pred hcCC--CEEEEEcCCCCc------cchhhHh--ceEEEEeCCCCHHH
Confidence 3222 477777765321 1234545 44566666665443
No 139
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=98.26 E-value=1e-06 Score=84.93 Aligned_cols=64 Identities=8% Similarity=0.064 Sum_probs=58.3
Q ss_pred HhhhHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCcHHHHHHHHcCCChhhHHHHHHHHHHH
Q 003038 10 QGLTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALELCFNVA 76 (854)
Q Consensus 10 ~~fT~~a~~aL~~A~~~A~~~gh~~Vt~eHLLlaLL~~~~s~l~~iL~~~gvd~~~~~aL~~~l~~~ 76 (854)
..||+.+.++|+.|..+|+++||.+|+++|||+||+.++++.+.++|.++|+++ +.|+..+...
T Consensus 80 ~~~s~~~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~~~~~a~~iL~~~gv~~---~~l~~~i~~~ 143 (145)
T 3fes_A 80 IVLSPRSKQILELSGMFANKLKTNYIGTEHILLAIIQEGEGIANKILNYAGVND---RTLAQLTIDM 143 (145)
T ss_dssp CEECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCHHHHHHHHHHTCHH---HHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCCcHHHHHHHHcCCCH---HHHHHHHHHH
Confidence 359999999999999999999999999999999999999888999999999976 7888777654
No 140
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.24 E-value=2.6e-06 Score=92.63 Aligned_cols=87 Identities=13% Similarity=0.171 Sum_probs=59.9
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEE
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFL 737 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~Vil 737 (854)
..++|+||+|+|||++|++++..+......++.+++..+. .... ..+.. +..+.+.+..+. ..|+|
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~-------~~~~-~~~~~----~~~~~~~~~~~~--~~vL~ 103 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA-------QAMV-EHLKK----GTINEFRNMYKS--VDLLL 103 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH-------HHHH-HHHHH----TCHHHHHHHHHT--CSEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH-------HHHH-HHHHc----CcHHHHHHHhcC--CCEEE
Confidence 4789999999999999999999887656788888877554 1110 00000 111233444432 57999
Q ss_pred EecCCCCCH--HHHHHHHHhhhc
Q 003038 738 IEDVEQADY--CSQKGFKRAIES 758 (854)
Q Consensus 738 iDEieka~~--~v~~~Ll~~le~ 758 (854)
||||+.+.. ..|..|+..++.
T Consensus 104 iDEi~~l~~~~~~~~~l~~~l~~ 126 (324)
T 1l8q_A 104 LDDVQFLSGKERTQIEFFHIFNT 126 (324)
T ss_dssp EECGGGGTTCHHHHHHHHHHHHH
T ss_pred EcCcccccCChHHHHHHHHHHHH
Confidence 999999876 778888888763
No 141
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.23 E-value=8.1e-07 Score=100.66 Aligned_cols=146 Identities=14% Similarity=0.202 Sum_probs=93.1
Q ss_pred HHHHHHHHhhcCcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHH-HHHHhCCC
Q 003038 607 ENLTSLCNALEKKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKEL-ARLVFGSH 685 (854)
Q Consensus 607 e~l~~L~~~L~~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~L-A~~lfg~~ 685 (854)
..+..|.+.+.. |+||+++...|.-++.. |-.+ .+...++|+.|++|+ ||.+|+.+ ++.+ . .
T Consensus 203 ~~~~~l~~sIap-I~G~e~vK~aLll~L~G---G~~k----------~rgdihVLL~G~PGt-KS~Lar~i~~~i~-p-R 265 (506)
T 3f8t_A 203 DPLTTFARAIAP-LPGAEEVGKMLALQLFS---CVGK----------NSERLHVLLAGYPVV-CSEILHHVLDHLA-P-R 265 (506)
T ss_dssp CHHHHHHHHHCC-STTCHHHHHHHHHHHTT---CCSS----------GGGCCCEEEESCHHH-HHHHHHHHHHHTC-S-S
T ss_pred HHHHHHHHHhcc-cCCCHHHHHHHHHHHcC---Cccc----------cCCceeEEEECCCCh-HHHHHHHHHHHhC-C-C
Confidence 456788889999 99999887666555433 2111 133458999999999 99999999 7765 1 1
Q ss_pred CceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhhcCeEecCC
Q 003038 686 NNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIESGRIVTSS 765 (854)
Q Consensus 686 ~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le~G~l~d~~ 765 (854)
..|+...++... ..... ...+.|+.+. .+++-.....|+|+|||+++++..|..|+++|++|.++-.
T Consensus 266 ~~ft~g~~ss~~--------gLt~s-~r~~tG~~~~---~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~- 332 (506)
T 3f8t_A 266 GVYVDLRRTELT--------DLTAV-LKEDRGWALR---AGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVD- 332 (506)
T ss_dssp EEEEEGGGCCHH--------HHSEE-EEESSSEEEE---ECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEET-
T ss_pred eEEecCCCCCcc--------CceEE-EEcCCCcccC---CCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEEC-
Confidence 122222221100 00000 0011111000 1112223468999999999999999999999999999977
Q ss_pred Cceeec-CCeEEEEecCCCC
Q 003038 766 GDEVSL-GDAIVILSCESFS 784 (854)
Q Consensus 766 G~~v~~-~~aIiIlTsn~f~ 784 (854)
|. .+ .++.||.|+|.-.
T Consensus 333 G~--~lparf~VIAA~NP~~ 350 (506)
T 3f8t_A 333 GI--ALNARCAVLAAINPGE 350 (506)
T ss_dssp TE--EEECCCEEEEEECCCC
T ss_pred CE--EcCCCeEEEEEeCccc
Confidence 66 43 5788999999643
No 142
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.22 E-value=9.7e-07 Score=97.80 Aligned_cols=75 Identities=9% Similarity=0.092 Sum_probs=59.8
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccc-cchHHH-HHHHHHHHHHH----HhhhCCC
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRH-MNRVEV-EQRVEEIKNLV----RSCLGRG 299 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~-~~rge~-E~rl~~l~~~~----~~~~~~~ 299 (854)
...+++|+||||||||++++.+|... +..++.++.+.+.. +|.|+. +..+.+++... ... .+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~----------~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~ 117 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL----------DVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKA--QR 117 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT----------TCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHH--HH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc----------CCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhc--CC
Confidence 46789999999999999999999874 56899999988874 488875 66677777664 322 36
Q ss_pred eEEEeCccccc-cc
Q 003038 300 IVLNLGDLEWA-EF 312 (854)
Q Consensus 300 ~ILfidel~~l-~~ 312 (854)
.||||||++.+ ..
T Consensus 118 ~vl~lDEid~l~~~ 131 (363)
T 3hws_A 118 GIVYIDQIDKISRK 131 (363)
T ss_dssp CEEEEECHHHHCCC
T ss_pred cEEEEeChhhhccc
Confidence 79999999999 44
No 143
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.21 E-value=9.7e-06 Score=86.52 Aligned_cols=95 Identities=13% Similarity=0.150 Sum_probs=62.9
Q ss_pred EEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCchH----HHHHHHHHcCCCEE
Q 003038 660 LFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYI----ERFAEAVSNNPHRV 735 (854)
Q Consensus 660 lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~----e~L~eav~~~p~~V 735 (854)
++|+||+|+|||+++++||..+ + ..++.++.+++. ... .|.. ..+.+..+....+|
T Consensus 47 vlL~Gp~GtGKTtLakala~~~-~--~~~i~i~g~~l~-------~~~----------~~~~~~~i~~vf~~a~~~~p~i 106 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANES-G--LNFISVKGPELL-------NMY----------VGESERAVRQVFQRAKNSAPCV 106 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHT-T--CEEEEEETTTTC-------SST----------THHHHHHHHHHHHHHHHTCSEE
T ss_pred EEEECCCCCcHHHHHHHHHHHc-C--CCEEEEEcHHHH-------hhh----------hhHHHHHHHHHHHHHHhcCCCe
Confidence 8999999999999999999976 3 368888876543 110 0111 13444444556689
Q ss_pred EEEecCCCCC-----------HHHHHHHHHhhhcCeEecCCCceeecCCeEEEEecCCC
Q 003038 736 FLIEDVEQAD-----------YCSQKGFKRAIESGRIVTSSGDEVSLGDAIVILSCESF 783 (854)
Q Consensus 736 iliDEieka~-----------~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn~f 783 (854)
+++|||+..- ..+.+.++..|+.|. .-+.+|++.++|.-
T Consensus 107 ~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~---------~~~~~i~ia~tn~p 156 (274)
T 2x8a_A 107 IFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLE---------ARQQVFIMAATNRP 156 (274)
T ss_dssp EEEETCTTTCC---------CTTHHHHHHHHHHTCC---------STTCEEEEEEESCG
T ss_pred EeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccc---------ccCCEEEEeecCCh
Confidence 9999999752 235566666676542 12456788888753
No 144
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.17 E-value=4.3e-07 Score=98.50 Aligned_cols=141 Identities=11% Similarity=0.066 Sum_probs=80.0
Q ss_pred cHHHHHHHHHHhhc--cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccccccccc------------
Q 003038 211 RNEDVMYVIENLMS--KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHM------------ 276 (854)
Q Consensus 211 r~~ei~~v~~~L~r--~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~------------ 276 (854)
+...++++++.+.+ +...+++|+||||||||.+++.++....+ .+..|+.++++.+...
T Consensus 7 ~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~-------~~~~~v~v~~~~~~~~l~~~~lfg~~~g 79 (304)
T 1ojl_A 7 SSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSAR-------SDRPLVTLNCAALNESLLESELFGHEKG 79 (304)
T ss_dssp CSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSC-------SSSCCCEEECSSCCHHHHHHHHTCCCSS
T ss_pred CCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcc-------cCCCeEEEeCCCCChHHHHHHhcCcccc
Confidence 55667777766655 57789999999999999999999986433 2446777776655321
Q ss_pred -chHHHHHHHHHHHHHHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhccc-----CCC----Cc
Q 003038 277 -NRVEVEQRVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG-----IGE----NA 345 (854)
Q Consensus 277 -~rge~E~rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-----~~g----~g 345 (854)
+.|.... ...++..+ .+.+||||||+.+ ... ...+-.+|.. .++ ..
T Consensus 80 ~~tg~~~~-~~g~~~~a-----~~g~L~LDEi~~l~~~~-----------------q~~Ll~~l~~~~~~~~g~~~~~~~ 136 (304)
T 1ojl_A 80 AFTGADKR-REGRFVEA-----DGGTLFLDEIGDISPLM-----------------QVRLLRAIQEREVQRVGSNQTISV 136 (304)
T ss_dssp CCC---CC-CCCHHHHH-----TTSEEEEESCTTCCHHH-----------------HHHHHHHHHSSBCCBTTBCCCCBC
T ss_pred ccCchhhh-hcCHHHhc-----CCCEEEEeccccCCHHH-----------------HHHHHHHHhcCEeeecCCcccccC
Confidence 1111111 11222222 2447999999998 431 1123333321 000 12
Q ss_pred eEEEEEecCHHHHHHhh--ccCCchhhhhccCCCCCCCch
Q 003038 346 RFWLMGIATFQSYMRCK--SGHPSLETLWSLHPLTIPAGS 383 (854)
Q Consensus 346 ~l~lIgatT~~ey~k~~--~~~pale~~~~~~~v~i~~~s 383 (854)
.+++|+||+..-..... ..++.|-. ||..+.|.-|.
T Consensus 137 ~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPp 174 (304)
T 1ojl_A 137 DVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPS 174 (304)
T ss_dssp CCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCC
T ss_pred CeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccC
Confidence 58999999875222111 12445555 77666544333
No 145
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.17 E-value=3.4e-06 Score=88.40 Aligned_cols=96 Identities=11% Similarity=0.168 Sum_probs=60.0
Q ss_pred EEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCc--hHHHHHHHHHcCCCEEEE
Q 003038 660 LFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCS--YIERFAEAVSNNPHRVFL 737 (854)
Q Consensus 660 lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g--~~e~L~eav~~~p~~Vil 737 (854)
++|+||+|+|||+++++|+..+ ...++.++...+. ... .+.+ ....+.+.......++++
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~---~~~~i~~~~~~~~-------~~~--------~~~~~~~i~~~~~~~~~~~~~i~~ 113 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDFV-------EMF--------VGVGAARVRDLFETAKRHAPCIVF 113 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHHHHH-------HSC--------TTHHHHHHHHHHHHHTTSSSEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCCEEEeeHHHHH-------HHH--------hhHHHHHHHHHHHHHHhcCCeEEE
Confidence 8999999999999999999987 2567888766443 110 0100 011344444444568999
Q ss_pred EecCCCCC--------------HHHHHHHHHhhhcCeEecCCCceeecCCeEEEEecCC
Q 003038 738 IEDVEQAD--------------YCSQKGFKRAIESGRIVTSSGDEVSLGDAIVILSCES 782 (854)
Q Consensus 738 iDEieka~--------------~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn~ 782 (854)
+||||.+. ....+.++..|+.|.- -+..|++.++|.
T Consensus 114 ~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~---------~~~~i~~a~t~~ 163 (254)
T 1ixz_A 114 IDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK---------DTAIVVMAATNR 163 (254)
T ss_dssp EETHHHHHC---------CHHHHHHHHHHHHHHHTCCT---------TCCEEEEEEESC
T ss_pred ehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC---------CCCEEEEEccCC
Confidence 99997542 1245566666664321 134567777764
No 146
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.15 E-value=4.3e-06 Score=90.00 Aligned_cols=139 Identities=9% Similarity=-0.054 Sum_probs=87.6
Q ss_pred cHHHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHH
Q 003038 211 RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKN 290 (854)
Q Consensus 211 r~~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~ 290 (854)
+++.++.+...+...+..+++|+||||+|||++++.+++.+.... .+..++.++.+.... . ..++++++
T Consensus 26 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~~~~~~--~----~~i~~~~~ 94 (323)
T 1sxj_B 26 NKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRS-----YADGVLELNASDDRG--I----DVVRNQIK 94 (323)
T ss_dssp CTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGG-----HHHHEEEECTTSCCS--H----HHHHTHHH
T ss_pred CHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc-----ccCCEEEecCccccC--h----HHHHHHHH
Confidence 888899998888876666799999999999999999999875421 123466665543221 2 23444555
Q ss_pred HHHh----h-hCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhcc
Q 003038 291 LVRS----C-LGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSG 364 (854)
Q Consensus 291 ~~~~----~-~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~ 364 (854)
.+.. . .+++.||+|||+|.+ ... ...+..++....+ ...+|.+|+... ..
T Consensus 95 ~~~~~~~~~~~~~~~viiiDe~~~l~~~~-----------------~~~L~~~le~~~~--~~~~il~~~~~~-----~l 150 (323)
T 1sxj_B 95 HFAQKKLHLPPGKHKIVILDEADSMTAGA-----------------QQALRRTMELYSN--STRFAFACNQSN-----KI 150 (323)
T ss_dssp HHHHBCCCCCTTCCEEEEEESGGGSCHHH-----------------HHTTHHHHHHTTT--TEEEEEEESCGG-----GS
T ss_pred HHHhccccCCCCCceEEEEECcccCCHHH-----------------HHHHHHHHhccCC--CceEEEEeCChh-----hc
Confidence 4441 0 134789999999999 431 1123334421112 377888776521 34
Q ss_pred CCchhhhhccCCCCCCCchHHH
Q 003038 365 HPSLETLWSLHPLTIPAGSLSL 386 (854)
Q Consensus 365 ~pale~~~~~~~v~i~~~sl~~ 386 (854)
.|++.+ |++.+.++.++...
T Consensus 151 ~~~l~s--r~~~i~~~~~~~~~ 170 (323)
T 1sxj_B 151 IEPLQS--QCAILRYSKLSDED 170 (323)
T ss_dssp CHHHHT--TSEEEECCCCCHHH
T ss_pred hhHHHh--hceEEeecCCCHHH
Confidence 677777 66677777665443
No 147
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.11 E-value=5.2e-06 Score=94.62 Aligned_cols=88 Identities=19% Similarity=0.201 Sum_probs=58.5
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCC--CCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEE
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGS--HNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRV 735 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~--~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~V 735 (854)
..++|+||+|+|||++|++|+..+... ...++.+++..+. .... . .+.. +..+.+.+..+ ....|
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~-------~~~~-~-~~~~---~~~~~~~~~~~-~~~~v 197 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL-------NDLV-D-SMKE---GKLNEFREKYR-KKVDI 197 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHH-------HHHH-H-HHHT---TCHHHHHHHHT-TTCSE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH-------HHHH-H-HHHc---ccHHHHHHHhc-CCCCE
Confidence 479999999999999999999988543 4567888776553 1110 0 0000 01112233222 14579
Q ss_pred EEEecCCCCCH--HHHHHHHHhhhc
Q 003038 736 FLIEDVEQADY--CSQKGFKRAIES 758 (854)
Q Consensus 736 iliDEieka~~--~v~~~Ll~~le~ 758 (854)
+|||||+.+.. ..|+.|+..|+.
T Consensus 198 L~IDEi~~l~~~~~~q~~l~~~l~~ 222 (440)
T 2z4s_A 198 LLIDDVQFLIGKTGVQTELFHTFNE 222 (440)
T ss_dssp EEEECGGGGSSCHHHHHHHHHHHHH
T ss_pred EEEeCcccccCChHHHHHHHHHHHH
Confidence 99999999876 788889888864
No 148
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.10 E-value=1.8e-06 Score=92.76 Aligned_cols=142 Identities=6% Similarity=-0.022 Sum_probs=85.5
Q ss_pred cHHHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHH
Q 003038 211 RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKN 290 (854)
Q Consensus 211 r~~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~ 290 (854)
+++.++.+...+...+..+++|+||||+|||++++.++..+.... .+..++.++.+.... ...+...+.++..
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 94 (319)
T 2chq_A 22 QDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN-----WRDNFIEMNASDERG--IDVVRHKIKEFAR 94 (319)
T ss_dssp CHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTC-----HHHHCEEEETTSTTC--TTTSSHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCc-----ccCCeEEEeCccccC--hHHHHHHHHHHHh
Confidence 778888888888776666899999999999999999999875321 123466666554322 1111122222211
Q ss_pred HHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCchh
Q 003038 291 LVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSLE 369 (854)
Q Consensus 291 ~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pale 369 (854)
...-..+++.||+|||+|.+ ... ...+..++..... .+.+|++|+... ...|++.
T Consensus 95 ~~~~~~~~~~vliiDe~~~l~~~~-----------------~~~L~~~le~~~~--~~~~i~~~~~~~-----~l~~~l~ 150 (319)
T 2chq_A 95 TAPIGGAPFKIIFLDEADALTADA-----------------QAALRRTMEMYSK--SCRFILSCNYVS-----RIIEPIQ 150 (319)
T ss_dssp SCCSSSCCCEEEEEETGGGSCHHH-----------------HHTTGGGTSSSSS--SEEEEEEESCGG-----GSCHHHH
T ss_pred cCCCCCCCceEEEEeCCCcCCHHH-----------------HHHHHHHHHhcCC--CCeEEEEeCChh-----hcchHHH
Confidence 10000034789999999999 421 1123334421112 488888887532 3467777
Q ss_pred hhhccCCCCCCCchHH
Q 003038 370 TLWSLHPLTIPAGSLS 385 (854)
Q Consensus 370 ~~~~~~~v~i~~~sl~ 385 (854)
+ |++.+.++.++..
T Consensus 151 s--r~~~i~~~~~~~~ 164 (319)
T 2chq_A 151 S--RCAVFRFKPVPKE 164 (319)
T ss_dssp T--TCEEEECCCCCHH
T ss_pred h--hCeEEEecCCCHH
Confidence 7 6667777665543
No 149
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.10 E-value=2.4e-06 Score=86.16 Aligned_cols=86 Identities=9% Similarity=0.146 Sum_probs=52.2
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEE
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFL 737 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~Vil 737 (854)
..++|+||+|+|||.+|++|+..+......++.++++++. .... ...... .+ ..+.+.+... .||+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~-------~~~~--~~~~~~--~~-~~~~~~~~~~--~~li 120 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELF-------RELK--HSLQDQ--TM-NEKLDYIKKV--PVLM 120 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHH-------HHHH--HC---C--CC-HHHHHHHHHS--SEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHH-------HHHH--HHhccc--hH-HHHHHHhcCC--CEEE
Confidence 4789999999999999999999987666677777776543 1110 001001 11 2233444433 4999
Q ss_pred EecCCC--CCHHHHHHHH-Hhhh
Q 003038 738 IEDVEQ--ADYCSQKGFK-RAIE 757 (854)
Q Consensus 738 iDEiek--a~~~v~~~Ll-~~le 757 (854)
||||+. .+...+..|+ .+++
T Consensus 121 lDei~~~~~~~~~~~~ll~~~l~ 143 (202)
T 2w58_A 121 LDDLGAEAMSSWVRDDVFGPILQ 143 (202)
T ss_dssp EEEECCC---CCGGGTTHHHHHH
T ss_pred EcCCCCCcCCHHHHHHHHHHHHH
Confidence 999965 4444455333 4554
No 150
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.10 E-value=2.4e-06 Score=97.38 Aligned_cols=141 Identities=8% Similarity=0.038 Sum_probs=81.6
Q ss_pred HHHHHHhhccC-cCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHH-HHHHHHHHH
Q 003038 216 MYVIENLMSKR-KRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQR-VEEIKNLVR 293 (854)
Q Consensus 216 ~~v~~~L~r~~-k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~r-l~~l~~~~~ 293 (854)
..+..+..... .++++|+||||+|||+++++++..+... ..+.+++.++...+...+.+.+... +..+.....
T Consensus 118 ~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~-----~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (440)
T 2z4s_A 118 HAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQN-----EPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYR 192 (440)
T ss_dssp HHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHH-----CCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh-----CCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhc
Confidence 33444433323 5789999999999999999999887542 1256778887776654333333322 111222111
Q ss_pred hhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhccc--CCCCceEEEEEecC-HHHHHHhhccCCchh
Q 003038 294 SCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG--IGENARFWLMGIAT-FQSYMRCKSGHPSLE 369 (854)
Q Consensus 294 ~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~--~~g~g~l~lIgatT-~~ey~k~~~~~pale 369 (854)
..+.||||||+|.+ +... ...++-.++.. ..| ...+|++.. +.++ ...++.|.
T Consensus 193 ---~~~~vL~IDEi~~l~~~~~---------------~q~~l~~~l~~l~~~~--~~iIitt~~~~~~l---~~l~~~L~ 249 (440)
T 2z4s_A 193 ---KKVDILLIDDVQFLIGKTG---------------VQTELFHTFNELHDSG--KQIVICSDREPQKL---SEFQDRLV 249 (440)
T ss_dssp ---TTCSEEEEECGGGGSSCHH---------------HHHHHHHHHHHHHTTT--CEEEEEESSCGGGC---SSCCHHHH
T ss_pred ---CCCCEEEEeCcccccCChH---------------HHHHHHHHHHHHHHCC--CeEEEEECCCHHHH---HHHHHHHH
Confidence 15789999999999 6321 11233333311 223 355665543 3332 23567777
Q ss_pred hhhcc---CCCCCCCchHHH
Q 003038 370 TLWSL---HPLTIPAGSLSL 386 (854)
Q Consensus 370 ~~~~~---~~v~i~~~sl~~ 386 (854)
+ || ..+.++.++...
T Consensus 250 s--R~~~g~~i~l~~p~~e~ 267 (440)
T 2z4s_A 250 S--RFQMGLVAKLEPPDEET 267 (440)
T ss_dssp H--HHHSSBCCBCCCCCHHH
T ss_pred h--hccCCeEEEeCCCCHHH
Confidence 7 66 577888777654
No 151
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.10 E-value=7.4e-06 Score=91.36 Aligned_cols=137 Identities=7% Similarity=0.011 Sum_probs=77.6
Q ss_pred cHHHHHHHHHHh-hc------cCcCCcee--ecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccccccc------c
Q 003038 211 RNEDVMYVIENL-MS------KRKRNFVV--VGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFR------H 275 (854)
Q Consensus 211 r~~ei~~v~~~L-~r------~~k~n~vL--vGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~------~ 275 (854)
|++|+.++.+.| .+ ...++++| +||||+|||++++.++..+.... +..-.+..++.++..... .
T Consensus 27 R~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (412)
T 1w5s_A 27 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAA-AKEGLTVKQAYVNAFNAPNLYTILS 105 (412)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHH-HHTTCCEEEEEEEGGGCCSHHHHHH
T ss_pred hHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHH-hccCCceeEEEEECCCCCCHHHHHH
Confidence 999999999988 42 24557888 89999999999999998865410 000013455665542111 0
Q ss_pred c----------chHH-HHHHHHHHHHHHHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhccc-CC
Q 003038 276 M----------NRVE-VEQRVEEIKNLVRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG-IG 342 (854)
Q Consensus 276 ~----------~rge-~E~rl~~l~~~~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~ 342 (854)
. ..|. .+.-+..+.+.+... ++++||+|||+|++ ...... . .....+..++.. ..
T Consensus 106 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~llvlDe~~~l~~~~~~~-~----------~~l~~l~~~~~~~~~ 173 (412)
T 1w5s_A 106 LIVRQTGYPIQVRGAPALDILKALVDNLYVE-NHYLLVILDEFQSMLSSPRIA-A----------EDLYTLLRVHEEIPS 173 (412)
T ss_dssp HHHHHHTCCCCCTTCCHHHHHHHHHHHHHHH-TCEEEEEEESTHHHHSCTTSC-H----------HHHHHHHTHHHHSCC
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHHhc-CCeEEEEEeCHHHHhhccCcc-h----------HHHHHHHHHHHhccc
Confidence 0 0111 222334444444433 56899999999999 541100 0 122233344421 10
Q ss_pred -C-CceEEEEEecCHHHHHH
Q 003038 343 -E-NARFWLMGIATFQSYMR 360 (854)
Q Consensus 343 -g-~g~l~lIgatT~~ey~k 360 (854)
+ +..+.+|++|+..++..
T Consensus 174 ~~~~~~v~lI~~~~~~~~~~ 193 (412)
T 1w5s_A 174 RDGVNRIGFLLVASDVRALS 193 (412)
T ss_dssp TTSCCBEEEEEEEEETHHHH
T ss_pred CCCCceEEEEEEeccccHHH
Confidence 1 13699999986555443
No 152
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=98.09 E-value=7.4e-06 Score=79.04 Aligned_cols=66 Identities=18% Similarity=0.149 Sum_probs=59.0
Q ss_pred HhhhHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCcHHHHHHHHcCCChhhHHHHHHHHHHHhc
Q 003038 10 QGLTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALELCFNVALN 78 (854)
Q Consensus 10 ~~fT~~a~~aL~~A~~~A~~~gh~~Vt~eHLLlaLL~~~~s~l~~iL~~~gvd~~~~~aL~~~l~~~L~ 78 (854)
..||+.+.++|+.|..+|+.+||.+|+++|||+||+.++++.+.++|..+|+++ +.++..+.....
T Consensus 78 ~~~s~~~~~vL~~A~~~A~~~~~~~i~~ehlLlall~~~~~~a~~~L~~~gi~~---~~l~~~i~~~~g 143 (150)
T 2y1q_A 78 IHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSL---NKARQQVLQLLG 143 (150)
T ss_dssp CEECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHHHTTCCH---HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHhCCCcHHHHHHHHcCCCH---HHHHHHHHHHHC
Confidence 369999999999999999999999999999999999988888889999999987 678877766554
No 153
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.09 E-value=4.3e-06 Score=90.10 Aligned_cols=139 Identities=7% Similarity=-0.009 Sum_probs=82.8
Q ss_pred cHHHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHH
Q 003038 211 RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKN 290 (854)
Q Consensus 211 r~~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~ 290 (854)
+++.++.+...+...+..+++|+||||+|||++++.++..+.... ....++.++.+.... ...+...+.+...
T Consensus 30 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~-----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 102 (327)
T 1iqp_A 30 QEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGEN-----WRHNFLELNASDERG--INVIREKVKEFAR 102 (327)
T ss_dssp CHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGG-----HHHHEEEEETTCHHH--HHTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc-----ccCceEEeeccccCc--hHHHHHHHHHHHh
Confidence 788888888888877666899999999999999999999875321 123456665443221 1111222222211
Q ss_pred HHHhhh-CCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccCCch
Q 003038 291 LVRSCL-GRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGHPSL 368 (854)
Q Consensus 291 ~~~~~~-~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~pal 368 (854)
.. ... +++.||+|||+|.+ ... ...+..++..... .+++|.+|+... ...|++
T Consensus 103 ~~-~~~~~~~~vliiDe~~~l~~~~-----------------~~~L~~~le~~~~--~~~~i~~~~~~~-----~l~~~l 157 (327)
T 1iqp_A 103 TK-PIGGASFKIIFLDEADALTQDA-----------------QQALRRTMEMFSS--NVRFILSCNYSS-----KIIEPI 157 (327)
T ss_dssp SC-CGGGCSCEEEEEETGGGSCHHH-----------------HHHHHHHHHHTTT--TEEEEEEESCGG-----GSCHHH
T ss_pred hC-CcCCCCCeEEEEeCCCcCCHHH-----------------HHHHHHHHHhcCC--CCeEEEEeCCcc-----ccCHHH
Confidence 00 000 35789999999999 431 1233444421112 377888876532 245667
Q ss_pred hhhhccCCCCCCCch
Q 003038 369 ETLWSLHPLTIPAGS 383 (854)
Q Consensus 369 e~~~~~~~v~i~~~s 383 (854)
.+ |++.+.++..+
T Consensus 158 ~s--r~~~~~~~~l~ 170 (327)
T 1iqp_A 158 QS--RCAIFRFRPLR 170 (327)
T ss_dssp HH--TEEEEECCCCC
T ss_pred Hh--hCcEEEecCCC
Confidence 66 55566665544
No 154
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.07 E-value=7.3e-06 Score=87.20 Aligned_cols=67 Identities=15% Similarity=0.250 Sum_probs=45.2
Q ss_pred EEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCc--hHHHHHHHHHcCCCEEEE
Q 003038 660 LFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCS--YIERFAEAVSNNPHRVFL 737 (854)
Q Consensus 660 lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g--~~e~L~eav~~~p~~Vil 737 (854)
++|+||+|+|||+++++|+..+- ..++.+++..+. ... .+.. ....+.+.......++++
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~---~~~i~~~~~~~~-------~~~--------~~~~~~~i~~~~~~~~~~~~~i~~ 137 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFV-------EMF--------VGVGAARVRDLFETAKRHAPCIVF 137 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHHH-------HST--------TTHHHHHHHHHHHHHHTSCSEEEE
T ss_pred EEEECCCcChHHHHHHHHHHHcC---CCEEEecHHHHH-------HHH--------hhHHHHHHHHHHHHHHhcCCcEEe
Confidence 89999999999999999999872 567888766443 110 0000 111344444445568999
Q ss_pred EecCCCC
Q 003038 738 IEDVEQA 744 (854)
Q Consensus 738 iDEieka 744 (854)
+|||+.+
T Consensus 138 iDeid~l 144 (278)
T 1iy2_A 138 IDEIDAV 144 (278)
T ss_dssp EETHHHH
T ss_pred hhhhHhh
Confidence 9999753
No 155
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.05 E-value=7e-06 Score=89.64 Aligned_cols=140 Identities=13% Similarity=0.092 Sum_probs=82.6
Q ss_pred cHHHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHH
Q 003038 211 RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKN 290 (854)
Q Consensus 211 r~~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~ 290 (854)
+++.++.+...+...+..+++|+||||+|||++++.++..+...+ .....++.++.+.... .+.+.+.+.....
T Consensus 42 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 115 (353)
T 1sxj_D 42 QDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD----LMKSRILELNASDERG--ISIVREKVKNFAR 115 (353)
T ss_dssp CCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHH----HHTTSEEEECSSSCCC--HHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCc----ccccceEEEccccccc--hHHHHHHHHHHhh
Confidence 777788888888776667899999999999999999999875310 1124566666554321 1222222222211
Q ss_pred H-----------HHhhhCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHH
Q 003038 291 L-----------VRSCLGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSY 358 (854)
Q Consensus 291 ~-----------~~~~~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey 358 (854)
. .... +.+.||||||++.+ ... ...+..++..... ..++|.+|+...
T Consensus 116 ~~~~~~~~~~~~~~~~-~~~~vliiDE~~~l~~~~-----------------~~~Ll~~le~~~~--~~~~il~~~~~~- 174 (353)
T 1sxj_D 116 LTVSKPSKHDLENYPC-PPYKIIILDEADSMTADA-----------------QSALRRTMETYSG--VTRFCLICNYVT- 174 (353)
T ss_dssp SCCCCCCTTHHHHSCC-CSCEEEEETTGGGSCHHH-----------------HHHHHHHHHHTTT--TEEEEEEESCGG-
T ss_pred hcccccchhhcccCCC-CCceEEEEECCCccCHHH-----------------HHHHHHHHHhcCC--CceEEEEeCchh-
Confidence 1 1111 34679999999999 431 1233444421112 255565665322
Q ss_pred HHhhccCCchhhhhccCCCCCCCch
Q 003038 359 MRCKSGHPSLETLWSLHPLTIPAGS 383 (854)
Q Consensus 359 ~k~~~~~pale~~~~~~~v~i~~~s 383 (854)
...|++.+ |++.+.++..+
T Consensus 175 ----~l~~~l~s--R~~~i~~~~~~ 193 (353)
T 1sxj_D 175 ----RIIDPLAS--QCSKFRFKALD 193 (353)
T ss_dssp ----GSCHHHHH--HSEEEECCCCC
T ss_pred ----hCcchhhc--cCceEEeCCCC
Confidence 35677777 66666665544
No 156
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.04 E-value=8.3e-06 Score=90.65 Aligned_cols=75 Identities=9% Similarity=0.112 Sum_probs=51.0
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccccccc-ccchHHH-HHHHHHHHHHH----HhhhCCC
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFR-HMNRVEV-EQRVEEIKNLV----RSCLGRG 299 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~-~~~rge~-E~rl~~l~~~~----~~~~~~~ 299 (854)
...+++|+||||||||++++.+|..+ +..++.++...+. +++.|+- +..+..++... ... .+
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l----------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~ 138 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHL----------DIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKA--QK 138 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT----------TCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHH--TT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHh----------CCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhc--CC
Confidence 45789999999999999999999874 4578888888775 3565653 44555555432 222 46
Q ss_pred eEEEeCccccc-cc
Q 003038 300 IVLNLGDLEWA-EF 312 (854)
Q Consensus 300 ~ILfidel~~l-~~ 312 (854)
.||||||++.+ ..
T Consensus 139 ~vl~iDEi~~l~~~ 152 (376)
T 1um8_A 139 GIVFIDEIDKISRL 152 (376)
T ss_dssp SEEEEETGGGC---
T ss_pred eEEEEcCHHHHhhh
Confidence 79999999999 54
No 157
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.03 E-value=1.1e-05 Score=88.68 Aligned_cols=141 Identities=11% Similarity=0.031 Sum_probs=82.7
Q ss_pred cHHHHHHHHHHhhccCcCC-ceeecCCCCCHHHHHHHHHHHHHcCCCCcc--------------cCCceEEEcccccccc
Q 003038 211 RNEDVMYVIENLMSKRKRN-FVVVGECLASIEGVVRGVIDKIEKGDVPEA--------------LRDVKCLPLSISSFRH 275 (854)
Q Consensus 211 r~~ei~~v~~~L~r~~k~n-~vLvGe~GvGKta~v~~la~~i~~~~vp~~--------------L~~~~~~~l~~~~l~~ 275 (854)
|++.++.+...+...+..+ ++|+||||+|||++++.++..+.....+.. -....++.++...-.
T Consensus 21 ~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 99 (373)
T 1jr3_A 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRT- 99 (373)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTCSC-
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccccC-
Confidence 8888998888887655444 689999999999999999998754221100 000123333322100
Q ss_pred cchHHHHHHHHHHHHHHHhhh--CCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEe
Q 003038 276 MNRVEVEQRVEEIKNLVRSCL--GRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGI 352 (854)
Q Consensus 276 ~~rge~E~rl~~l~~~~~~~~--~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIga 352 (854)
.. ..++++++.+.... +++.||+|||+|++ .. ....+..++....+ .+.+|++
T Consensus 100 -~~----~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~-----------------~~~~Ll~~le~~~~--~~~~Il~ 155 (373)
T 1jr3_A 100 -KV----EDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH-----------------SFNALLKTLEEPPE--HVKFLLA 155 (373)
T ss_dssp -CS----SCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHH-----------------HHHHHHHHHHSCCS--SEEEEEE
T ss_pred -CH----HHHHHHHHHHhhccccCCeEEEEEECcchhcHH-----------------HHHHHHHHHhcCCC--ceEEEEE
Confidence 11 12445666555321 45789999999999 43 12234455522122 4888888
Q ss_pred cCHHHHHHhhccCCchhhhhccCCCCCCCch
Q 003038 353 ATFQSYMRCKSGHPSLETLWSLHPLTIPAGS 383 (854)
Q Consensus 353 tT~~ey~k~~~~~pale~~~~~~~v~i~~~s 383 (854)
|+... ...+++.+ +++.+.++..+
T Consensus 156 ~~~~~-----~l~~~l~s--r~~~i~~~~l~ 179 (373)
T 1jr3_A 156 TTDPQ-----KLPVTILS--RCLQFHLKALD 179 (373)
T ss_dssp ESCGG-----GSCHHHHT--TSEEEECCCCC
T ss_pred eCChH-----hCcHHHHh--heeEeeCCCCC
Confidence 87432 23456655 55556665554
No 158
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.01 E-value=7.9e-06 Score=79.13 Aligned_cols=72 Identities=11% Similarity=0.152 Sum_probs=54.4
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEE
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLI 738 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~Vili 738 (854)
.++|+||+|+|||+++++|+..+.......+.++..++. .. . +.. ...|++|
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~-------~~------------~--------~~~-~~~lLil 89 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMP-------LT------------D--------AAF-EAEYLAV 89 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSC-------CC------------G--------GGG-GCSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhh-------HH------------H--------HHh-CCCEEEE
Confidence 688999999999999999999886544456777766544 11 0 011 2479999
Q ss_pred ecCCCCCHHHHHHHHHhhhc
Q 003038 739 EDVEQADYCSQKGFKRAIES 758 (854)
Q Consensus 739 DEieka~~~v~~~Ll~~le~ 758 (854)
||++..+...+..|++.|+.
T Consensus 90 DE~~~~~~~~~~~l~~li~~ 109 (149)
T 2kjq_A 90 DQVEKLGNEEQALLFSIFNR 109 (149)
T ss_dssp ESTTCCCSHHHHHHHHHHHH
T ss_pred eCccccChHHHHHHHHHHHH
Confidence 99999988778888888863
No 159
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.93 E-value=1e-05 Score=82.78 Aligned_cols=82 Identities=4% Similarity=0.048 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHH
Q 003038 212 NEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNL 291 (854)
Q Consensus 212 ~~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~ 291 (854)
++-+..+...+.....++++|+||||+|||++++.++..+... +..++.++...+...... ++..
T Consensus 37 ~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~--------~~~~ 101 (242)
T 3bos_A 37 DELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL-------ERRSFYIPLGIHASISTA--------LLEG 101 (242)
T ss_dssp HHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEEEGGGGGGSCGG--------GGTT
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEEHHHHHHHHHH--------HHHh
Confidence 3555666555555578899999999999999999999987653 456677776665543211 1111
Q ss_pred HHhhhCCCeEEEeCccccc-cc
Q 003038 292 VRSCLGRGIVLNLGDLEWA-EF 312 (854)
Q Consensus 292 ~~~~~~~~~ILfidel~~l-~~ 312 (854)
+ ..+.||||||++.+ ..
T Consensus 102 ~----~~~~vliiDe~~~~~~~ 119 (242)
T 3bos_A 102 L----EQFDLICIDDVDAVAGH 119 (242)
T ss_dssp G----GGSSEEEEETGGGGTTC
T ss_pred c----cCCCEEEEeccccccCC
Confidence 1 24679999999999 53
No 160
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.87 E-value=3.4e-06 Score=91.90 Aligned_cols=134 Identities=5% Similarity=-0.031 Sum_probs=79.4
Q ss_pred cHHHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccc------ccccc-----chH
Q 003038 211 RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSIS------SFRHM-----NRV 279 (854)
Q Consensus 211 r~~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~------~l~~~-----~rg 279 (854)
+++.++.+...+.. .+|++|+||||+|||++++.++..+ +..++.++.. .+... ..|
T Consensus 32 ~~~~~~~l~~~l~~--~~~vll~G~pGtGKT~la~~la~~~----------~~~~~~i~~~~~~~~~~l~g~~~~~~~~~ 99 (331)
T 2r44_A 32 QKYMINRLLIGICT--GGHILLEGVPGLAKTLSVNTLAKTM----------DLDFHRIQFTPDLLPSDLIGTMIYNQHKG 99 (331)
T ss_dssp CHHHHHHHHHHHHH--TCCEEEESCCCHHHHHHHHHHHHHT----------TCCEEEEECCTTCCHHHHHEEEEEETTTT
T ss_pred cHHHHHHHHHHHHc--CCeEEEECCCCCcHHHHHHHHHHHh----------CCCeEEEecCCCCChhhcCCceeecCCCC
Confidence 66777777777764 5799999999999999999999875 2344444432 11111 011
Q ss_pred HHHHHHHHHHHHHHhhhC--CCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhccc-----CC----CCceE
Q 003038 280 EVEQRVEEIKNLVRSCLG--RGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCG-----IG----ENARF 347 (854)
Q Consensus 280 e~E~rl~~l~~~~~~~~~--~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-----~~----g~g~l 347 (854)
.+. . .. + .+.||||||++.+ .... ..+..++.. .+ -...+
T Consensus 100 ~~~---------~-~~-g~l~~~vl~iDEi~~~~~~~~-----------------~~Ll~~l~~~~~~~~g~~~~~~~~~ 151 (331)
T 2r44_A 100 NFE---------V-KK-GPVFSNFILADEVNRSPAKVQ-----------------SALLECMQEKQVTIGDTTYPLDNPF 151 (331)
T ss_dssp EEE---------E-EE-CTTCSSEEEEETGGGSCHHHH-----------------HHHHHHHHHSEEEETTEEEECCSSC
T ss_pred ceE---------e-cc-CcccccEEEEEccccCCHHHH-----------------HHHHHHHhcCceeeCCEEEECCCCE
Confidence 110 0 00 1 1259999999998 4321 111122210 00 01258
Q ss_pred EEEEecCHHHHHHhhccCCchhhhhccC-CCCCCCchHHH
Q 003038 348 WLMGIATFQSYMRCKSGHPSLETLWSLH-PLTIPAGSLSL 386 (854)
Q Consensus 348 ~lIgatT~~ey~k~~~~~pale~~~~~~-~v~i~~~sl~~ 386 (854)
++|+++++.+|......+|+|.+ ||. .+.|+.++...
T Consensus 152 ~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~ 189 (331)
T 2r44_A 152 LVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKES 189 (331)
T ss_dssp EEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHH
T ss_pred EEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHH
Confidence 89988887665433346789988 775 37777766544
No 161
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.87 E-value=5.8e-06 Score=89.76 Aligned_cols=40 Identities=15% Similarity=0.124 Sum_probs=32.8
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHh-CCCCceEEEcccccc
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVF-GSHNNFVSIALSSFS 697 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lf-g~~~~~i~id~s~~~ 697 (854)
..++|+||+|+|||.||++||..+. .....++.+.++++.
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 4789999999999999999999887 555667777766543
No 162
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=97.85 E-value=2.4e-05 Score=74.70 Aligned_cols=61 Identities=11% Similarity=0.049 Sum_probs=55.1
Q ss_pred HhhhHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCcHHHHHHHHcCCChhhHHHHHHHH
Q 003038 10 QGLTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALELCF 73 (854)
Q Consensus 10 ~~fT~~a~~aL~~A~~~A~~~gh~~Vt~eHLLlaLL~~~~s~l~~iL~~~gvd~~~~~aL~~~l 73 (854)
..||+.+.++|+.|..+|+.+|+.||+++|||+||+.++++.+.++|..+|+++ +.++..+
T Consensus 78 ~~~s~~~~~~l~~A~~~A~~~~~~~i~~ehLLlall~~~~~~~~~iL~~~gi~~---~~l~~~i 138 (143)
T 1k6k_A 78 TQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSR---LDVVNFI 138 (143)
T ss_dssp CEECHHHHHHHHHHHHHHHSSSCSCBCHHHHHHHHTTCTTSHHHHHHHHTTCCH---HHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCcCcHHHHHHHHcCCCH---HHHHHHH
Confidence 369999999999999999999999999999999999988887899999999987 5666554
No 163
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.81 E-value=4.4e-05 Score=82.91 Aligned_cols=37 Identities=14% Similarity=0.201 Sum_probs=34.1
Q ss_pred cHHHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHH
Q 003038 211 RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 211 r~~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
|++|+.++.+ |.+ +.++|+||+|+|||++++.++.+.
T Consensus 18 R~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 18 REKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp CHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc
Confidence 9999999999 775 689999999999999999999875
No 164
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.80 E-value=3e-05 Score=86.42 Aligned_cols=140 Identities=9% Similarity=0.002 Sum_probs=84.7
Q ss_pred CcccccHHHHHHHHHHH-HHhhcCCCcccCCCcCCcccCcceeEEE--ecCCCchHHHHHHHHHHHHhCC------CCce
Q 003038 618 KKVPWQKDTVYDIANTV-LKCRSGTMRRKGKFKDHSEVKEETWLFF--QGVDADAKEKIAKELARLVFGS------HNNF 688 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v-~~~rsgl~~~~~~~~~~~~~kp~~~lLf--~Gp~GvGKt~lAr~LA~~lfg~------~~~~ 688 (854)
..++|.+..+..|...+ .....|... ....+++ +||+|+|||++++.+++.+... ...+
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~------------~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~ 89 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGL------------SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQ 89 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCB------------CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCC------------CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeE
Confidence 56899999999999888 766554211 1247788 9999999999999999877431 3456
Q ss_pred EEEccccccCcCCCcccccccccc---CC---C-CCCchH---HHHHHHHHc-CCCEEEEEecCCCCC------HHHHHH
Q 003038 689 VSIALSSFSSTRADSTEDSRNKRS---RD---E-QSCSYI---ERFAEAVSN-NPHRVFLIEDVEQAD------YCSQKG 751 (854)
Q Consensus 689 i~id~s~~~~~~~~s~e~~~~~rl---~~---~-~g~g~~---e~L~eav~~-~p~~ViliDEieka~------~~v~~~ 751 (854)
+.+++..... .......+ ++ + .+.... +.+.+.+.. ....||+|||++.++ .+++..
T Consensus 90 ~~~~~~~~~~------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~ 163 (412)
T 1w5s_A 90 AYVNAFNAPN------LYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYT 163 (412)
T ss_dssp EEEEGGGCCS------HHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHH
T ss_pred EEEECCCCCC------HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHH
Confidence 7787654331 00001110 11 1 121122 245555543 445799999999874 477777
Q ss_pred HHHhhhcCeEecCCCceeecCCeEEEEecC
Q 003038 752 FKRAIESGRIVTSSGDEVSLGDAIVILSCE 781 (854)
Q Consensus 752 Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn 781 (854)
|++.+++.... + . -.+..||+|++
T Consensus 164 l~~~~~~~~~~---~--~-~~~v~lI~~~~ 187 (412)
T 1w5s_A 164 LLRVHEEIPSR---D--G-VNRIGFLLVAS 187 (412)
T ss_dssp HHTHHHHSCCT---T--S-CCBEEEEEEEE
T ss_pred HHHHHHhcccC---C--C-CceEEEEEEec
Confidence 77777653110 0 0 13566777775
No 165
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.72 E-value=2.1e-05 Score=85.75 Aligned_cols=31 Identities=13% Similarity=0.134 Sum_probs=25.8
Q ss_pred hhccCcCCceeecCCCCCHHHHHHHHHHHHH
Q 003038 222 LMSKRKRNFVVVGECLASIEGVVRGVIDKIE 252 (854)
Q Consensus 222 L~r~~k~n~vLvGe~GvGKta~v~~la~~i~ 252 (854)
+......+++|+||||+|||.+++.++..+.
T Consensus 40 ~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 40 AVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp HHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred hhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 3334567899999999999999999998764
No 166
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=97.71 E-value=7e-05 Score=71.86 Aligned_cols=61 Identities=15% Similarity=0.167 Sum_probs=53.2
Q ss_pred HhhhHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCcHHHHHHHHcCCChhhHHHHHHHHH
Q 003038 10 QGLTAEAASVVKQAMTLARRRGHAQVTPLHVANTMLAASTGLLRTACLQSHSHPLQCKALELCFN 74 (854)
Q Consensus 10 ~~fT~~a~~aL~~A~~~A~~~gh~~Vt~eHLLlaLL~~~~s~l~~iL~~~gvd~~~~~aL~~~l~ 74 (854)
..||+.+.++|+.|..+|+.+||.+|+++|||+||+ ++++.+.++|..+|+++ +.|+..+.
T Consensus 81 ~~~s~~~~~vl~~A~~~a~~~~~~~i~~ehlLlall-~~~~~~~~~L~~~gi~~---~~l~~~l~ 141 (148)
T 1khy_A 81 VQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAAL-ESRGTLADILKAAGATT---ANITQAIE 141 (148)
T ss_dssp -CBCHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH-TSCHHHHHHHHHTTCCH---HHHHHHHH
T ss_pred cCcCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHH-cCCcHHHHHHHHcCCCH---HHHHHHHH
Confidence 369999999999999999999999999999999999 45667889999999987 56666553
No 167
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.68 E-value=6.7e-05 Score=80.45 Aligned_cols=89 Identities=12% Similarity=0.149 Sum_probs=56.7
Q ss_pred cHHHHHHHHHHhhccC---------cCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccccccccc-----
Q 003038 211 RNEDVMYVIENLMSKR---------KRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHM----- 276 (854)
Q Consensus 211 r~~ei~~v~~~L~r~~---------k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~----- 276 (854)
.++.++.+...+.+.. ..+++|+||||+|||++++.++..+... +..++.++++.+...
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 94 (311)
T 4fcw_A 22 QDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT-------EEAMIRIDMTEYMEKHAVSR 94 (311)
T ss_dssp CHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC-------GGGEEEEEGGGCCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC-------CcceEEeecccccccccHHH
Confidence 4455666666555431 2478999999999999999999987543 345777777655321
Q ss_pred -------chHHHHHHHHHHHHHHHhhhCCCeEEEeCccccc
Q 003038 277 -------NRVEVEQRVEEIKNLVRSCLGRGIVLNLGDLEWA 310 (854)
Q Consensus 277 -------~rge~E~rl~~l~~~~~~~~~~~~ILfidel~~l 310 (854)
+.|.-+ ...+...+... .+.||||||++.+
T Consensus 95 l~g~~~~~~~~~~--~~~~~~~~~~~--~~~vl~lDEi~~l 131 (311)
T 4fcw_A 95 LIGAPPGYVGYEE--GGQLTEAVRRR--PYSVILFDAIEKA 131 (311)
T ss_dssp HHCCCTTSTTTTT--CCHHHHHHHHC--SSEEEEEETGGGS
T ss_pred hcCCCCccccccc--cchHHHHHHhC--CCeEEEEeChhhc
Confidence 111000 01233344443 5689999999988
No 168
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.65 E-value=8e-05 Score=80.67 Aligned_cols=38 Identities=16% Similarity=0.216 Sum_probs=34.8
Q ss_pred cHHHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHH
Q 003038 211 RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDK 250 (854)
Q Consensus 211 r~~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~ 250 (854)
|++|+.++.+.+... +.++|+|++|+|||++++.++.+
T Consensus 17 R~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 17 REEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp CHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHH
Confidence 999999999988753 78999999999999999999876
No 169
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.65 E-value=3.6e-05 Score=77.43 Aligned_cols=86 Identities=13% Similarity=0.184 Sum_probs=52.2
Q ss_pred HHHHHHHHhhccC----cCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHH-HHHHHHH
Q 003038 214 DVMYVIENLMSKR----KRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEV-EQRVEEI 288 (854)
Q Consensus 214 ei~~v~~~L~r~~----k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~-E~rl~~l 288 (854)
-+..+...+.... .++++|+||||+|||+++++++..+... +..++.++...+.......+ +..+..+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (202)
T 2w58_A 37 AIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR-------NVSSLIVYVPELFRELKHSLQDQTMNEK 109 (202)
T ss_dssp HHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT-------TCCEEEEEHHHHHHHHHHC---CCCHHH
T ss_pred HHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEEhHHHHHHHHHHhccchHHHH
Confidence 3444444444331 1789999999999999999999987643 34555555554433211111 0112334
Q ss_pred HHHHHhhhCCCeEEEeCccccc
Q 003038 289 KNLVRSCLGRGIVLNLGDLEWA 310 (854)
Q Consensus 289 ~~~~~~~~~~~~ILfidel~~l 310 (854)
++.+... .+|||||++..
T Consensus 110 ~~~~~~~----~~lilDei~~~ 127 (202)
T 2w58_A 110 LDYIKKV----PVLMLDDLGAE 127 (202)
T ss_dssp HHHHHHS----SEEEEEEECCC
T ss_pred HHHhcCC----CEEEEcCCCCC
Confidence 4555542 38999999776
No 170
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.64 E-value=1.8e-05 Score=78.31 Aligned_cols=76 Identities=12% Similarity=0.102 Sum_probs=45.9
Q ss_pred cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHH-HHHHHHHHHhhhCCCeEEE
Q 003038 225 KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQR-VEEIKNLVRSCLGRGIVLN 303 (854)
Q Consensus 225 ~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~r-l~~l~~~~~~~~~~~~ILf 303 (854)
...++++|+||||+|||++++.++..+... .|..++.++...+....+..+... ...+++.+. .+-||+
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~lli 105 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKAIYEK------KGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTVL----NSPVLV 105 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHHHHHH------SCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHHH----TCSEEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHH------cCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHhc----CCCEEE
Confidence 456889999999999999999999987511 122333344444433222221111 112333333 356899
Q ss_pred eCccccc
Q 003038 304 LGDLEWA 310 (854)
Q Consensus 304 idel~~l 310 (854)
|||++..
T Consensus 106 lDE~~~~ 112 (180)
T 3ec2_A 106 LDDLGSE 112 (180)
T ss_dssp EETCSSS
T ss_pred EeCCCCC
Confidence 9999754
No 171
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.63 E-value=0.00027 Score=77.31 Aligned_cols=147 Identities=7% Similarity=-0.020 Sum_probs=85.5
Q ss_pred cHHHHHHHHHHhhccCcCC-ceeecCCCCCHHHHHHHHHHHHHcCCCCcc--------------cCCceEEEcccccccc
Q 003038 211 RNEDVMYVIENLMSKRKRN-FVVVGECLASIEGVVRGVIDKIEKGDVPEA--------------LRDVKCLPLSISSFRH 275 (854)
Q Consensus 211 r~~ei~~v~~~L~r~~k~n-~vLvGe~GvGKta~v~~la~~i~~~~vp~~--------------L~~~~~~~l~~~~l~~ 275 (854)
.++.++++...+..++-.+ .+|+||||+|||++++.+|+.+........ .....++.++...- .
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-~ 85 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG-K 85 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT-C
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc-C
Confidence 4566777777777655444 899999999999999999998865432110 00123444443210 0
Q ss_pred cchHHHHHHHHHHHHHHHhhh--CCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEe
Q 003038 276 MNRVEVEQRVEEIKNLVRSCL--GRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGI 352 (854)
Q Consensus 276 ~~rge~E~rl~~l~~~~~~~~--~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIga 352 (854)
...+ -..++++++.+.... ++.-|++|||+|.+ .. +...+-+.|..... ...+|.+
T Consensus 86 ~~~~--i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~-----------------a~naLLk~lEep~~--~~~~Il~ 144 (334)
T 1a5t_A 86 NTLG--VDAVREVTEKLNEHARLGGAKVVWVTDAALLTDA-----------------AANALLKTLEEPPA--ETWFFLA 144 (334)
T ss_dssp SSBC--HHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHH-----------------HHHHHHHHHTSCCT--TEEEEEE
T ss_pred CCCC--HHHHHHHHHHHhhccccCCcEEEEECchhhcCHH-----------------HHHHHHHHhcCCCC--CeEEEEE
Confidence 0111 123456666665321 45789999999999 43 12234445521112 3777777
Q ss_pred cCHHHHHHhhccCCchhhhhccCCCCCCCchHHH
Q 003038 353 ATFQSYMRCKSGHPSLETLWSLHPLTIPAGSLSL 386 (854)
Q Consensus 353 tT~~ey~k~~~~~pale~~~~~~~v~i~~~sl~~ 386 (854)
|+..+ ...|++.+ |.+.+.++.++...
T Consensus 145 t~~~~-----~l~~ti~S--Rc~~~~~~~~~~~~ 171 (334)
T 1a5t_A 145 TREPE-----RLLATLRS--RCRLHYLAPPPEQY 171 (334)
T ss_dssp ESCGG-----GSCHHHHT--TSEEEECCCCCHHH
T ss_pred eCChH-----hCcHHHhh--cceeeeCCCCCHHH
Confidence 66421 35677877 66667776655433
No 172
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.60 E-value=0.00011 Score=80.38 Aligned_cols=133 Identities=11% Similarity=0.028 Sum_probs=75.7
Q ss_pred cHHHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHH
Q 003038 211 RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKN 290 (854)
Q Consensus 211 r~~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~ 290 (854)
.++-+..+...+...+-.+.+|+||||+|||++++.+|..+.... ....++.++.+.... .. .+++++.
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~-----~~~~~~~~~~~~~~~--~~----~ir~~i~ 98 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKN-----YSNMVLELNASDDRG--ID----VVRNQIK 98 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTS-----HHHHEEEECTTSCCS--HH----HHHTHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCC-----ccceEEEEcCccccc--HH----HHHHHHH
Confidence 344455555555554556689999999999999999999875321 123566666543211 12 2333333
Q ss_pred HHHhh----hCCCeEEEeCccccc-cccccccccccccchhhhHHHHHHHhhcccCCCCceEEEEEecCHHHHHHhhccC
Q 003038 291 LVRSC----LGRGIVLNLGDLEWA-EFRASSSEQVRGYYCSIEHIIMEIGKLVCGIGENARFWLMGIATFQSYMRCKSGH 365 (854)
Q Consensus 291 ~~~~~----~~~~~ILfidel~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~g~l~lIgatT~~ey~k~~~~~ 365 (854)
.+.+. .++.-|++|||+|.+ ... ...+..++..... ...+|.+|+... ...
T Consensus 99 ~~~~~~~~~~~~~~viiiDe~~~l~~~~-----------------~~~L~~~le~~~~--~~~~il~~n~~~-----~i~ 154 (340)
T 1sxj_C 99 DFASTRQIFSKGFKLIILDEADAMTNAA-----------------QNALRRVIERYTK--NTRFCVLANYAH-----KLT 154 (340)
T ss_dssp HHHHBCCSSSCSCEEEEETTGGGSCHHH-----------------HHHHHHHHHHTTT--TEEEEEEESCGG-----GSC
T ss_pred HHHhhcccCCCCceEEEEeCCCCCCHHH-----------------HHHHHHHHhcCCC--CeEEEEEecCcc-----ccc
Confidence 33321 024689999999999 431 2234455521112 366777776431 345
Q ss_pred CchhhhhccCCCCCC
Q 003038 366 PSLETLWSLHPLTIP 380 (854)
Q Consensus 366 pale~~~~~~~v~i~ 380 (854)
|++.+ |++.+.+.
T Consensus 155 ~~i~s--R~~~~~~~ 167 (340)
T 1sxj_C 155 PALLS--QCTRFRFQ 167 (340)
T ss_dssp HHHHT--TSEEEECC
T ss_pred hhHHh--hceeEecc
Confidence 66766 44444443
No 173
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.56 E-value=0.0001 Score=80.65 Aligned_cols=43 Identities=7% Similarity=0.042 Sum_probs=33.0
Q ss_pred cHHHHHHHHHHh-hccCcCCceeecCCCCCHHHHHHHHHHHHHc
Q 003038 211 RNEDVMYVIENL-MSKRKRNFVVVGECLASIEGVVRGVIDKIEK 253 (854)
Q Consensus 211 r~~ei~~v~~~L-~r~~k~n~vLvGe~GvGKta~v~~la~~i~~ 253 (854)
.++.+..+...+ ...+..+.+|+||+|+|||++++.++..+..
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~ 62 (354)
T 1sxj_E 19 NEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFG 62 (354)
T ss_dssp CHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSC
T ss_pred CHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 556666666666 4445556999999999999999999997643
No 174
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.48 E-value=0.00012 Score=74.41 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=23.3
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhC
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFG 683 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg 683 (854)
.++|+||+|+|||++|.+||+.+.|
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999999855
No 175
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.41 E-value=8.7e-05 Score=84.24 Aligned_cols=69 Identities=7% Similarity=0.160 Sum_probs=56.5
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccc-cchHH-HHHHHHHHHHHHHhhhCCCeEEE
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRH-MNRVE-VEQRVEEIKNLVRSCLGRGIVLN 303 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~-~~rge-~E~rl~~l~~~~~~~~~~~~ILf 303 (854)
.++|++|+||||||||++++.||..+ +..++.++.+.+.. +|.|+ .+..++.++..+... ++
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l----------~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~------~~ 112 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLA----------NAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKL------VR 112 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT----------TCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHH------HH
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHc----------CCCceeecchhhcccceeeccHHHHHHHHHHHHHhc------ch
Confidence 35789999999999999999999874 67899999988887 68884 899999999988764 46
Q ss_pred eCccccc
Q 003038 304 LGDLEWA 310 (854)
Q Consensus 304 idel~~l 310 (854)
+||+..+
T Consensus 113 ~De~d~~ 119 (444)
T 1g41_A 113 QQEIAKN 119 (444)
T ss_dssp HHHHHSC
T ss_pred hhhhhhh
Confidence 8998777
No 176
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.34 E-value=0.00053 Score=92.64 Aligned_cols=99 Identities=11% Similarity=0.104 Sum_probs=72.6
Q ss_pred EEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEe
Q 003038 660 LFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIE 739 (854)
Q Consensus 660 lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliD 739 (854)
.++.||+|+|||++++.||+.+ ...+++++|++-. +... ....+.++++.. .+++||
T Consensus 648 ~~l~GpaGtGKTe~vk~LA~~l---g~~~v~~nc~e~l-------d~~~-----------lg~~~~g~~~~G--aw~~~D 704 (2695)
T 4akg_A 648 GCFFGPAGTGKTETVKAFGQNL---GRVVVVFNCDDSF-------DYQV-----------LSRLLVGITQIG--AWGCFD 704 (2695)
T ss_dssp EEEECCTTSCHHHHHHHHHHTT---TCCCEEEETTSSC-------CHHH-----------HHHHHHHHHHHT--CEEEEE
T ss_pred CcccCCCCCCcHHHHHHHHHHh---CCcEEEEECCCCC-------ChhH-----------hhHHHHHHHhcC--CEeeeh
Confidence 4688999999999999999988 4678999998655 1111 112345555443 699999
Q ss_pred cCCCCCHHHHHHH-------HHhhhcCe--EecCCCceeecC-CeEEEEecCC
Q 003038 740 DVEQADYCSQKGF-------KRAIESGR--IVTSSGDEVSLG-DAIVILSCES 782 (854)
Q Consensus 740 Eieka~~~v~~~L-------l~~le~G~--l~d~~G~~v~~~-~aIiIlTsn~ 782 (854)
||++++++++..| +.++.++. +. -.|+.+.+. ++.|++|.|.
T Consensus 705 E~nr~~~evLs~l~~~l~~i~~al~~~~~~i~-~~g~~i~l~~~~~vfiT~NP 756 (2695)
T 4akg_A 705 EFNRLDEKVLSAVSANIQQIQNGLQVGKSHIT-LLEEETPLSPHTAVFITLNP 756 (2695)
T ss_dssp TTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEE-CSSSEEECCTTCEEEEEECC
T ss_pred hhhhcChHHHHHHHHHHHHHHHHHHcCCcEEe-eCCcEEecCCCceEEEEeCC
Confidence 9999999999988 56665554 33 347788775 5667778885
No 177
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.28 E-value=0.00011 Score=79.58 Aligned_cols=73 Identities=18% Similarity=0.191 Sum_probs=44.8
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHHH-cCCCCcccCCceEEEcccccccccchHHH-HHHHHHHHHHHHhhhCCCeEEEe
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKIE-KGDVPEALRDVKCLPLSISSFRHMNRVEV-EQRVEEIKNLVRSCLGRGIVLNL 304 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i~-~~~vp~~L~~~~~~~l~~~~l~~~~rge~-E~rl~~l~~~~~~~~~~~~ILfi 304 (854)
.+|++|+||||||||.++.+++..+. .. +..++.++...|....++.+ +..+.++++.+.. .-||||
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~-------g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~----~~lLii 220 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKK-------GVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVKN----VPVLIL 220 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHS-------CCCEEEEEHHHHHHHHHCCCC----CCTTHHHHT----SSEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhc-------CCcEEEEEHHHHHHHHHHHhccchHHHHHHHhcC----CCEEEE
Confidence 68999999999999999999999876 42 34555555544433111100 0112233444443 348999
Q ss_pred Cccccc
Q 003038 305 GDLEWA 310 (854)
Q Consensus 305 del~~l 310 (854)
|||...
T Consensus 221 Ddig~~ 226 (308)
T 2qgz_A 221 DDIGAE 226 (308)
T ss_dssp ETCCC-
T ss_pred cCCCCC
Confidence 999665
No 178
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.14 E-value=8.3e-05 Score=85.93 Aligned_cols=39 Identities=10% Similarity=0.087 Sum_probs=32.7
Q ss_pred cHHHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHH
Q 003038 211 RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 211 r~~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
+++.++.++..+.. +.|++|+||||||||.+|+++|..+
T Consensus 27 q~~~i~~l~~al~~--~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 27 RSHAIRLCLLAALS--GESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp CHHHHHHHHHHHHH--TCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred HHHHHHHHHHHHhc--CCeeEeecCchHHHHHHHHHHHHHH
Confidence 56677777777664 5799999999999999999999875
No 179
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.13 E-value=0.00031 Score=76.28 Aligned_cols=73 Identities=12% Similarity=0.105 Sum_probs=51.9
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeC
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLG 305 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfid 305 (854)
..+.++|+||||+|||+++..+|.. .|. .+.+++++....+..+..+.++.+..+.+.+.+. + +||||
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~--~G~------~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~---~-LLVID 189 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA--LGG------KDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQH---R-VIVID 189 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH--HHT------TSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHC---S-EEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh--CCC------CEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhC---C-EEEEe
Confidence 4455799999999999999999976 221 2345565322222233366778888888888765 4 99999
Q ss_pred ccccc
Q 003038 306 DLEWA 310 (854)
Q Consensus 306 el~~l 310 (854)
+|..+
T Consensus 190 sI~aL 194 (331)
T 2vhj_A 190 SLKNV 194 (331)
T ss_dssp CCTTT
T ss_pred ccccc
Confidence 99999
No 180
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=97.06 E-value=2.2e-05 Score=92.85 Aligned_cols=23 Identities=4% Similarity=0.132 Sum_probs=21.1
Q ss_pred CceeecCCCCCHHHHHHHHHHHH
Q 003038 229 NFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 229 n~vLvGe~GvGKta~v~~la~~i 251 (854)
|++|+||||||||.+++.+|...
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTC
T ss_pred ceEEECCCchHHHHHHHHHHHhC
Confidence 89999999999999999998654
No 181
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.05 E-value=0.0026 Score=68.77 Aligned_cols=87 Identities=15% Similarity=0.118 Sum_probs=53.5
Q ss_pred HHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHh
Q 003038 215 VMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRS 294 (854)
Q Consensus 215 i~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~ 294 (854)
+..+...+..++..+.+|+||||+|||++++.+|..... ... ....++.++.+. ...| -..++++++.+..
T Consensus 6 ~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~--~~~--~~~d~~~l~~~~---~~~~--id~ir~li~~~~~ 76 (305)
T 2gno_A 6 LETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEK--FPP--KASDVLEIDPEG---ENIG--IDDIRTIKDFLNY 76 (305)
T ss_dssp HHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHT--SCC--CTTTEEEECCSS---SCBC--HHHHHHHHHHHTS
T ss_pred HHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCch--hhc--cCCCEEEEcCCc---CCCC--HHHHHHHHHHHhh
Confidence 344444455445557899999999999999999975321 111 233455565431 0111 1235567777654
Q ss_pred hh--CCCeEEEeCccccc
Q 003038 295 CL--GRGIVLNLGDLEWA 310 (854)
Q Consensus 295 ~~--~~~~ILfidel~~l 310 (854)
.. ++.-|++|||+|.+
T Consensus 77 ~p~~~~~kvviIdead~l 94 (305)
T 2gno_A 77 SPELYTRKYVIVHDCERM 94 (305)
T ss_dssp CCSSSSSEEEEETTGGGB
T ss_pred ccccCCceEEEeccHHHh
Confidence 31 34579999999999
No 182
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.04 E-value=0.0012 Score=72.22 Aligned_cols=64 Identities=13% Similarity=0.116 Sum_probs=40.3
Q ss_pred CCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeCcc
Q 003038 228 RNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLGDL 307 (854)
Q Consensus 228 ~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfidel 307 (854)
.+++|+||||+|||++++.+|..+. +.+...+...+.. .++ +..++. .. ..+.|+||||+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~----------~~~~~~sg~~~~~--~~~----l~~~~~---~~-~~~~v~~iDE~ 111 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQ----------TNIHVTSGPVLVK--QGD----MAAILT---SL-ERGDVLFIDEI 111 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHT----------CCEEEEETTTCCS--HHH----HHHHHH---HC-CTTCEEEEETG
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC----------CCEEEEechHhcC--HHH----HHHHHH---Hc-cCCCEEEEcch
Confidence 6899999999999999999998762 2233222221111 111 222222 21 24569999999
Q ss_pred ccc-c
Q 003038 308 EWA-E 311 (854)
Q Consensus 308 ~~l-~ 311 (854)
|.+ .
T Consensus 112 ~~l~~ 116 (334)
T 1in4_A 112 HRLNK 116 (334)
T ss_dssp GGCCH
T ss_pred hhcCH
Confidence 999 5
No 183
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.01 E-value=0.00086 Score=70.96 Aligned_cols=90 Identities=14% Similarity=0.243 Sum_probs=54.5
Q ss_pred eeEEEecCCCchHHHHHHHHHHHH--hCCCCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCC-E
Q 003038 658 TWLFFQGVDADAKEKIAKELARLV--FGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPH-R 734 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~l--fg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~-~ 734 (854)
..++|+||+|+|||.+|++||..+ +| .++ +.. ..+... ..+. .
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~l~G------~vn---~~~------~~f~l~-------------------~~~~k~ 150 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVPFYG------CVN---WTN------ENFPFN-------------------DCVDKM 150 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSCEE------ECC---TTC------SSCTTG-------------------GGSSCS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhcccc------eee---ccc------cccccc-------------------cccccE
Confidence 369999999999999999999963 33 111 110 001100 1122 3
Q ss_pred EEEEecCCCCCHHHHHHHHHhhhcCeEe-cCC-CceeecCCeEEEEecCC
Q 003038 735 VFLIEDVEQADYCSQKGFKRAIESGRIV-TSS-GDEVSLGDAIVILSCES 782 (854)
Q Consensus 735 ViliDEieka~~~v~~~Ll~~le~G~l~-d~~-G~~v~~~~aIiIlTsn~ 782 (854)
|++.||. .+..+.++.++.+++-+.+. |.+ ...+....+-||+|||.
T Consensus 151 i~l~Ee~-~~~~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~ 199 (267)
T 1u0j_A 151 VIWWEEG-KMTAKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNT 199 (267)
T ss_dssp EEEECSC-CEETTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESS
T ss_pred EEEeccc-cchhHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecC
Confidence 5555555 45567888899988744444 322 23456778889999985
No 184
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.00 E-value=0.0015 Score=70.48 Aligned_cols=52 Identities=6% Similarity=0.041 Sum_probs=40.7
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccc
Q 003038 619 KVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSS 695 (854)
Q Consensus 619 ~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~ 695 (854)
.++|.+..+..|...+.. | ..++++||.|+|||++++.+++.+ + .+.+++..
T Consensus 13 ~~~gR~~el~~L~~~l~~---~-----------------~~v~i~G~~G~GKT~Ll~~~~~~~-~----~~~~~~~~ 64 (350)
T 2qen_A 13 DIFDREEESRKLEESLEN---Y-----------------PLTLLLGIRRVGKSSLLRAFLNER-P----GILIDCRE 64 (350)
T ss_dssp GSCSCHHHHHHHHHHHHH---C-----------------SEEEEECCTTSSHHHHHHHHHHHS-S----EEEEEHHH
T ss_pred hcCChHHHHHHHHHHHhc---C-----------------CeEEEECCCcCCHHHHHHHHHHHc-C----cEEEEeec
Confidence 468888888888777653 1 278999999999999999999875 2 67777654
No 185
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=96.99 E-value=0.0014 Score=64.75 Aligned_cols=61 Identities=26% Similarity=0.336 Sum_probs=52.0
Q ss_pred cChhHHHHHHHHHHHHHHHhhhCCcccccccccccccCHHHHHHHhccCC--hHHHHHHHhCCCHHHHHHHHHHHhh
Q 003038 94 QFPTISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIELEQLIISILDDP--SVSRVMREAGFSSTQVKSNVEQAVS 168 (854)
Q Consensus 94 ~~p~~s~~L~~al~~A~~~~~~~~~~~~~~~~~~~~I~~eHLLLALL~d~--~~~~iL~~~Gi~~~~l~~~v~~~l~ 168 (854)
+++.+.++|+.|.+.|...++ . +|+++|||+||++++ .+.++|.++|++.+.++..+. .+.
T Consensus 25 fT~~a~~aL~~A~~~A~~~~h----~---------~I~~EHLLlaLL~~~~~~a~~iL~~~gvd~~~l~~~l~-~l~ 87 (171)
T 3zri_A 25 LNAQSKLALEQAASLCIERQH----P---------EVTLEHYLDVLLDNPLSDVRLVLKQAGLEVDQVKQAIA-STY 87 (171)
T ss_dssp BCHHHHHHHHHHHHHHHHHTC----S---------EECHHHHHHHHTTCTTSHHHHHHHHTTCCHHHHHHHHH-HHS
T ss_pred cCHHHHHHHHHHHHHHHHcCC----C---------cccHHHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHH-HHh
Confidence 578888888888888887642 2 599999999999974 689999999999999999888 663
No 186
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.97 E-value=0.0017 Score=71.71 Aligned_cols=99 Identities=12% Similarity=0.234 Sum_probs=64.7
Q ss_pred cceeEEEecCCCchHHHHHHHHHHHHhCC-CCceEEEc-cccccCcCCCccccccccc-cCCCCCCchHHHHHHHHHcCC
Q 003038 656 EETWLFFQGVDADAKEKIAKELARLVFGS-HNNFVSIA-LSSFSSTRADSTEDSRNKR-SRDEQSCSYIERFAEAVSNNP 732 (854)
Q Consensus 656 p~~~lLf~Gp~GvGKt~lAr~LA~~lfg~-~~~~i~id-~s~~~~~~~~s~e~~~~~r-l~~~~g~g~~e~L~eav~~~p 732 (854)
+.+.+++.||+|+|||++.++|+..+-.. ...++.+. --+|..... ...+.. ........|.+.|..+++.+|
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~----~~~v~q~~~~~~~~~~~~~La~aL~~~P 197 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESK----KCLVNQREVHRDTLGFSEALRSALREDP 197 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCS----SSEEEEEEBTTTBSCHHHHHHHHTTSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhcc----ccceeeeeeccccCCHHHHHHHHhhhCc
Confidence 45689999999999999999999988533 33444432 222321000 000100 111222366667888888888
Q ss_pred CEEEEEecCCCCCHHHHHHHHHhhhcCeE
Q 003038 733 HRVFLIEDVEQADYCSQKGFKRAIESGRI 761 (854)
Q Consensus 733 ~~ViliDEieka~~~v~~~Ll~~le~G~l 761 (854)
.||++||+- +++....++++.+.|..
T Consensus 198 -dvillDEp~--d~e~~~~~~~~~~~G~~ 223 (356)
T 3jvv_A 198 -DIILVGEMR--DLETIRLALTAAETGHL 223 (356)
T ss_dssp -SEEEESCCC--SHHHHHHHHHHHHTTCE
T ss_pred -CEEecCCCC--CHHHHHHHHHHHhcCCE
Confidence 799999997 78888888898887643
No 187
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.93 E-value=0.00071 Score=65.23 Aligned_cols=61 Identities=11% Similarity=-0.002 Sum_probs=44.5
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccccccccchHHHHHHHHHHHHHHHhhhCCCeEEEeC
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLG 305 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfid 305 (854)
..++++|+||+|+|||++++.++..+.. .|.+++.++...+... .+. .++-||+||
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-------~g~~~~~~~~~~~~~~--------------~~~---~~~~lLilD 90 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-------AGKNAAYIDAASMPLT--------------DAA---FEAEYLAVD 90 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-------TTCCEEEEETTTSCCC--------------GGG---GGCSEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-------cCCcEEEEcHHHhhHH--------------HHH---hCCCEEEEe
Confidence 5678999999999999999999988753 2455666665555432 011 135689999
Q ss_pred ccccc
Q 003038 306 DLEWA 310 (854)
Q Consensus 306 el~~l 310 (854)
|++.+
T Consensus 91 E~~~~ 95 (149)
T 2kjq_A 91 QVEKL 95 (149)
T ss_dssp STTCC
T ss_pred Ccccc
Confidence 99887
No 188
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.93 E-value=0.0036 Score=68.30 Aligned_cols=94 Identities=7% Similarity=0.082 Sum_probs=64.6
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCC-CceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHH----cCC
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSH-NNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVS----NNP 732 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~-~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~----~~p 732 (854)
..+||+||+|.||++.++.|++.++... ..+..+. +. .. ... ..+.+.+. ..+
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~-------~~-----------~~~-~~l~~~~~~~plf~~ 76 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS---ID-------PN-----------TDW-NAIFSLCQAMSLFAS 76 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE---CC-------TT-----------CCH-HHHHHHHHHHHHCCS
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE---ec-------CC-----------CCH-HHHHHHhcCcCCccC
Confidence 4899999999999999999999886421 1211111 11 00 011 12333333 356
Q ss_pred CEEEEEecCCC-CCHHHHHHHHHhhhcCeEecCCCceeecCCeEEEEecCCCC
Q 003038 733 HRVFLIEDVEQ-ADYCSQKGFKRAIESGRIVTSSGDEVSLGDAIVILSCESFS 784 (854)
Q Consensus 733 ~~ViliDEiek-a~~~v~~~Ll~~le~G~l~d~~G~~v~~~~aIiIlTsn~f~ 784 (854)
++||+|||+++ ++...++.|++++++- -.+++|||+++..+
T Consensus 77 ~kvvii~~~~~kl~~~~~~aLl~~le~p-----------~~~~~~il~~~~~~ 118 (343)
T 1jr3_D 77 RQTLLLLLPENGPNAAINEQLLTLTGLL-----------HDDLLLIVRGNKLS 118 (343)
T ss_dssp CEEEEEECCSSCCCTTHHHHHHHHHTTC-----------BTTEEEEEEESCCC
T ss_pred CeEEEEECCCCCCChHHHHHHHHHHhcC-----------CCCeEEEEEcCCCC
Confidence 89999999999 9999999999999851 24788888876544
No 189
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.87 E-value=0.0012 Score=89.75 Aligned_cols=117 Identities=11% Similarity=0.087 Sum_probs=73.0
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCc--cccccccccCCCCCCchHHHHHHHHHcCCCEEE
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADS--TEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVF 736 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s--~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~Vi 736 (854)
.+||+||+|+|||.+++.....+. ...++.+++|..+++...- .+..-.++.....|. ++.+.+....-||
T Consensus 1306 pvLL~GptGtGKT~li~~~L~~l~--~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~-----~~~p~~~Gk~~Vl 1378 (3245)
T 3vkg_A 1306 PLILCGPPGSGKTMTLTSTLRAFP--DFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGET-----VLRPTQLGKWLVV 1378 (3245)
T ss_dssp CCEEESSTTSSHHHHHHHHGGGCT--TEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCE-----EEEESSTTCEEEE
T ss_pred cEEEECCCCCCHHHHHHHHHHhCC--CCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCc-----ccCCCcCCceEEE
Confidence 689999999999977654433333 2467889988776310000 000000000000000 0000001224599
Q ss_pred EEecCCCCCHH------HHHHHHHhhhcCeEecC-CCceeecCCeEEEEecCC
Q 003038 737 LIEDVEQADYC------SQKGFKRAIESGRIVTS-SGDEVSLGDAIVILSCES 782 (854)
Q Consensus 737 liDEieka~~~------v~~~Ll~~le~G~l~d~-~G~~v~~~~aIiIlTsn~ 782 (854)
||||++...++ +...|.|.||.|.+.|. .+..+...+..||.|+|.
T Consensus 1379 FiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnP 1431 (3245)
T 3vkg_A 1379 FCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNP 1431 (3245)
T ss_dssp EETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECC
T ss_pred EecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCC
Confidence 99999998876 89999999999988885 456678899999999984
No 190
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.86 E-value=0.0046 Score=70.50 Aligned_cols=116 Identities=10% Similarity=0.092 Sum_probs=66.3
Q ss_pred cccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhCCCC-ceEEEccccccC-
Q 003038 621 PWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFGSHN-NFVSIALSSFSS- 698 (854)
Q Consensus 621 ~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~-~~i~id~s~~~~- 698 (854)
.+|.+|+..+...|.. +.+.+++.|++|+|||+++..++..+..... .++.+..+.-..
T Consensus 28 ~~Q~~av~~~~~~i~~-------------------~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~ 88 (459)
T 3upu_A 28 EGQKNAFNIVMKAIKE-------------------KKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKK 88 (459)
T ss_dssp HHHHHHHHHHHHHHHS-------------------SSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHH
T ss_pred HHHHHHHHHHHHHHhc-------------------CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHH
Confidence 5799999888877653 1238999999999999999999998865443 333332110000
Q ss_pred -----cCCCccccccccccCC--CCCC-chHHHHHHHHHcCCCEEEEEecCCCCCHHHHHHHHHhhh
Q 003038 699 -----TRADSTEDSRNKRSRD--EQSC-SYIERFAEAVSNNPHRVFLIEDVEQADYCSQKGFKRAIE 757 (854)
Q Consensus 699 -----~~~~s~e~~~~~rl~~--~~g~-g~~e~L~eav~~~p~~ViliDEieka~~~v~~~Ll~~le 757 (854)
.......-|+..++.. .... .+.. ...-....+.+|++||+..+++..+..|++.+.
T Consensus 89 ~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~ 153 (459)
T 3upu_A 89 ILSKLSGKEASTIHSILKINPVTYEENVLFEQ--KEVPDLAKCRVLICDEVSMYDRKLFKILLSTIP 153 (459)
T ss_dssp HHHHHHSSCEEEHHHHHTEEEEECSSCEEEEE--CSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSC
T ss_pred HHHhhhccchhhHHHHhccCcccccccchhcc--cccccccCCCEEEEECchhCCHHHHHHHHHhcc
Confidence 0000000011000000 0000 0000 000011247899999999999999999999886
No 191
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.84 E-value=0.0036 Score=67.61 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=28.9
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccc
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSF 696 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~ 696 (854)
.++++||.|+|||++++.+++.+ + ...+.+++..+
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~-~--~~~~~~~~~~~ 66 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINEL-N--LPYIYLDLRKF 66 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH-T--CCEEEEEGGGG
T ss_pred cEEEECCCCCCHHHHHHHHHHhc-C--CCEEEEEchhh
Confidence 78999999999999999999887 2 24677887654
No 192
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.83 E-value=0.0033 Score=68.26 Aligned_cols=72 Identities=11% Similarity=0.270 Sum_probs=44.8
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEE
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLI 738 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~Vili 738 (854)
.++|+||+|+|||.+|..+|.. -|..-.|+.+...+.. ... ........+.+.+.+.+.+ +|+|
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~-~G~~VlyIs~~~eE~v----------~~~---~~~le~~l~~i~~~l~~~~--LLVI 188 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEA-LGGKDKYATVRFGEPL----------SGY---NTDFNVFVDDIARAMLQHR--VIVI 188 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHH-HHTTSCCEEEEBSCSS----------TTC---BCCHHHHHHHHHHHHHHCS--EEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHh-CCCCEEEEEecchhhh----------hhh---hcCHHHHHHHHHHHHhhCC--EEEE
Confidence 5689999999999999999987 3433445655323211 000 0000022234666776666 9999
Q ss_pred ecCCCCCH
Q 003038 739 EDVEQADY 746 (854)
Q Consensus 739 DEieka~~ 746 (854)
|+|.-+.+
T Consensus 189 DsI~aL~~ 196 (331)
T 2vhj_A 189 DSLKNVIG 196 (331)
T ss_dssp ECCTTTC-
T ss_pred eccccccc
Confidence 99998754
No 193
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.82 E-value=0.0014 Score=77.48 Aligned_cols=41 Identities=17% Similarity=0.251 Sum_probs=30.2
Q ss_pred cHHHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHH
Q 003038 211 RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIE 252 (854)
Q Consensus 211 r~~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~ 252 (854)
..+.+.+.+..... ...+++|+||||+|||++++.++..+.
T Consensus 45 G~~~~l~~l~~~i~-~g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 45 GQEHAVEVIKTAAN-QKRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp SCHHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CchhhHhhcccccc-CCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 34444444444443 457999999999999999999998653
No 194
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.81 E-value=0.00053 Score=68.54 Aligned_cols=93 Identities=10% Similarity=0.062 Sum_probs=51.5
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccc---cccCcCCCccccccccccC-CCCCC--chHHHHHHHHHcCC
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALS---SFSSTRADSTEDSRNKRSR-DEQSC--SYIERFAEAVSNNP 732 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s---~~~~~~~~s~e~~~~~rl~-~~~g~--g~~e~L~eav~~~p 732 (854)
..+++||+|+|||+++..++..+.+...+.+.+... .|. +..-.+++- ..... .-.+.+.+.+. .+
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~-------~~~i~s~~g~~~~~~~~~~~~~~~~~~~-~~ 76 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYH-------STMIVSHSGNGVEAHVIERPEEMRKYIE-ED 76 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----C-------CCEECC----CEECEEESSGGGGGGGCC-TT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccC-------cccEEecCCCceeeEEECCHHHHHHHhc-CC
Confidence 578999999999999977766554433333332211 111 000011100 00000 00012222222 35
Q ss_pred CEEEEEecCCCCCHHHHHHHHHhhhcC
Q 003038 733 HRVFLIEDVEQADYCSQKGFKRAIESG 759 (854)
Q Consensus 733 ~~ViliDEieka~~~v~~~Ll~~le~G 759 (854)
+.+|+|||+...++++.+.|....++|
T Consensus 77 ~dvviIDE~Q~~~~~~~~~l~~l~~~~ 103 (184)
T 2orw_A 77 TRGVFIDEVQFFNPSLFEVVKDLLDRG 103 (184)
T ss_dssp EEEEEECCGGGSCTTHHHHHHHHHHTT
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHCC
Confidence 789999999999999888888888764
No 195
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.72 E-value=0.0038 Score=64.37 Aligned_cols=98 Identities=13% Similarity=0.014 Sum_probs=57.8
Q ss_pred ceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccC-CCCCC--chHHHHHHHHHc---
Q 003038 657 ETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSR-DEQSC--SYIERFAEAVSN--- 730 (854)
Q Consensus 657 ~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~-~~~g~--g~~e~L~eav~~--- 730 (854)
....+++||+|+|||+++..++..+-+.....+.+....-. + + +..-.+++- ..+.. ...+.+.+.+++
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~--r--~-~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDT--R--S-IRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCG--G--G-CSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCc--h--H-HHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 35778889999999999998887665555555555322111 0 0 111112210 00110 112356666665
Q ss_pred -CCCEEEEEecCCCCCHHHHHHHHHhhhcC
Q 003038 731 -NPHRVFLIEDVEQADYCSQKGFKRAIESG 759 (854)
Q Consensus 731 -~p~~ViliDEieka~~~v~~~Ll~~le~G 759 (854)
.++.||+|||+.-++.+....+..+.+.|
T Consensus 87 ~~~~dvViIDEaQ~l~~~~ve~l~~L~~~g 116 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDDRICEVANILAENG 116 (223)
T ss_dssp CTTCCEEEECSGGGSCTHHHHHHHHHHHTT
T ss_pred CCCCCEEEEecCccCcHHHHHHHHHHHhCC
Confidence 45899999999999888767666555543
No 196
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.68 E-value=0.0011 Score=77.73 Aligned_cols=40 Identities=10% Similarity=0.033 Sum_probs=34.8
Q ss_pred cHHHHHHHHHHhhc--cCcCCceeecCCCCCHHHHHHHHHHH
Q 003038 211 RNEDVMYVIENLMS--KRKRNFVVVGECLASIEGVVRGVIDK 250 (854)
Q Consensus 211 r~~ei~~v~~~L~r--~~k~n~vLvGe~GvGKta~v~~la~~ 250 (854)
|++++.++.+.|.. ...+-++|+|++|+|||++|..++.+
T Consensus 129 R~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 129 RKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp CHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhc
Confidence 99999999999974 34456899999999999999999865
No 197
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=96.66 E-value=0.0036 Score=69.46 Aligned_cols=53 Identities=19% Similarity=0.215 Sum_probs=37.2
Q ss_pred HHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccccccc
Q 003038 213 EDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFR 274 (854)
Q Consensus 213 ~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~ 274 (854)
.++.+.+.-++ ....++++.||+|+||+.+++.+...-.+ ++ .|+.++++.+-
T Consensus 139 ~~~~~~~~~~a-~~~~~vli~GesGtGKe~lAr~ih~~s~r-------~~-~fv~vnc~~~~ 191 (368)
T 3dzd_A 139 LEIKRLIPKIA-KSKAPVLITGESGTGKEIVARLIHRYSGR-------KG-AFVDLNCASIP 191 (368)
T ss_dssp HHHHHHHHHHH-TSCSCEEEECCTTSSHHHHHHHHHHHHCC-------CS-CEEEEESSSSC
T ss_pred HHHHhhhhhhh-ccchhheEEeCCCchHHHHHHHHHHhccc-------cC-CcEEEEcccCC
Confidence 34444555444 46778999999999999999988765321 12 39999988653
No 198
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.63 E-value=0.002 Score=70.44 Aligned_cols=78 Identities=10% Similarity=0.076 Sum_probs=55.7
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHc----CC-C--------------CcccCCceEEEcccccc-ccc-chHHHHHH
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEK----GD-V--------------PEALRDVKCLPLSISSF-RHM-NRVEVEQR 284 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~----~~-v--------------p~~L~~~~~~~l~~~~l-~~~-~rge~E~r 284 (854)
+++.++|+||+|+|||+++..||+++.. .| . ++...++.-+-++...+ ... ..++|.+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~~~ 118 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFRSL 118 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHHHH
Confidence 4457899999999999999999988631 00 0 45666666666666555 333 57889898
Q ss_pred HHHHHHHHHhhhCCCeEEEeC
Q 003038 285 VEEIKNLVRSCLGRGIVLNLG 305 (854)
Q Consensus 285 l~~l~~~~~~~~~~~~ILfid 305 (854)
..++++++... ++++|+++
T Consensus 119 a~~~i~~i~~~--g~~pIlvG 137 (339)
T 3a8t_A 119 AGKAVSEITGR--RKLPVLVG 137 (339)
T ss_dssp HHHHHHHHHHT--TCEEEEEC
T ss_pred HHHHHHHHHhc--CCeEEEEc
Confidence 89899888765 45666655
No 199
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.58 E-value=0.0055 Score=83.61 Aligned_cols=99 Identities=12% Similarity=0.077 Sum_probs=69.2
Q ss_pred EEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEEec
Q 003038 661 FFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLIED 740 (854)
Q Consensus 661 Lf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~ViliDE 740 (854)
...||.|+|||++++.||+.+ | ..++.++|++-. +...+ ...+.+++.. ..-.+|||
T Consensus 608 ~~~GPaGtGKTet~k~La~~l-g--r~~~vfnC~~~~-------d~~~~-----------g~i~~G~~~~--GaW~cfDE 664 (3245)
T 3vkg_A 608 NPFGPAGTGKTETVKALGSQL-G--RFVLVFCCDEGF-------DLQAM-----------SRIFVGLCQC--GAWGCFDE 664 (3245)
T ss_dssp EEECSTTSSHHHHHHHHHHHT-T--CCEEEEECSSCC-------CHHHH-----------HHHHHHHHHH--TCEEEEET
T ss_pred CCCCCCCCCHHHHHHHHHHHh-C--CeEEEEeCCCCC-------CHHHH-----------HHHHhhHhhc--CcEEEehh
Confidence 467999999999999999998 4 678899988654 11111 1123444443 45778999
Q ss_pred CCCCCHHHHHHHHHhhh---------cCeEecCCCceeecC-CeEEEEecCC
Q 003038 741 VEQADYCSQKGFKRAIE---------SGRIVTSSGDEVSLG-DAIVILSCES 782 (854)
Q Consensus 741 ieka~~~v~~~Ll~~le---------~G~l~d~~G~~v~~~-~aIiIlTsn~ 782 (854)
|++++++++..+.+.|. ..++.-..|++|.+. ++.|++|.|.
T Consensus 665 fNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNp 716 (3245)
T 3vkg_A 665 FNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNP 716 (3245)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCC
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCC
Confidence 99999999999888665 345544347788875 5677888885
No 200
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.57 E-value=0.0067 Score=64.01 Aligned_cols=98 Identities=16% Similarity=0.286 Sum_probs=56.0
Q ss_pred cceeEEEecCCCchHHHHHHHHHHHHhCC-CCceEEEccc-cccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCC
Q 003038 656 EETWLFFQGVDADAKEKIAKELARLVFGS-HNNFVSIALS-SFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPH 733 (854)
Q Consensus 656 p~~~lLf~Gp~GvGKt~lAr~LA~~lfg~-~~~~i~id~s-~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~ 733 (854)
+...+++.||+|+|||++.+.|+..+-.. ...++..+-. +|....... .-..+.++-....|...|..+++.+|
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~---~v~q~~~gl~~~~l~~~la~aL~~~p- 99 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKS---IVNQREVGEDTKSFADALRAALREDP- 99 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSS---EEEEEEBTTTBSCHHHHHHHHHHHCC-
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcce---eeeHHHhCCCHHHHHHHHHHHHhhCC-
Confidence 34689999999999999999999987432 2233222211 111000000 00000111011245447888888877
Q ss_pred EEEEEecCCCCCHHHHHHHHHhhhcC
Q 003038 734 RVFLIEDVEQADYCSQKGFKRAIESG 759 (854)
Q Consensus 734 ~ViliDEieka~~~v~~~Ll~~le~G 759 (854)
.||++||.- |++....+++....|
T Consensus 100 ~illlDEp~--D~~~~~~~l~~~~~g 123 (261)
T 2eyu_A 100 DVIFVGEMR--DLETVETALRAAETG 123 (261)
T ss_dssp SEEEESCCC--SHHHHHHHHHHHHTT
T ss_pred CEEEeCCCC--CHHHHHHHHHHHccC
Confidence 699999997 776655555555444
No 201
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.54 E-value=0.0024 Score=63.42 Aligned_cols=23 Identities=13% Similarity=0.245 Sum_probs=21.1
Q ss_pred eEEEecCCCchHHHHHHHHHHHH
Q 003038 659 WLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
.+.|.||+|+|||++.+.|+..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999987
No 202
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.41 E-value=0.0043 Score=60.54 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=22.4
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHH
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
...++|+|+||+|||++++.|++++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3568999999999999999999875
No 203
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=96.33 E-value=0.01 Score=66.26 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=36.8
Q ss_pred HHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccccccc
Q 003038 215 VMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFR 274 (854)
Q Consensus 215 i~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~ 274 (854)
+.+.+.-++ ....+++|.||+|+|||.+++.+...-.. .+..|+.++++.+.
T Consensus 149 l~~~i~~~a-~~~~~vli~Ge~GtGK~~lAr~ih~~s~r-------~~~~fv~v~~~~~~ 200 (387)
T 1ny5_A 149 ILEKIKKIS-CAECPVLITGESGVGKEVVARLIHKLSDR-------SKEPFVALNVASIP 200 (387)
T ss_dssp HHHHHHHHT-TCCSCEEEECSTTSSHHHHHHHHHHHSTT-------TTSCEEEEETTTSC
T ss_pred HHHHHHHhc-CCCCCeEEecCCCcCHHHHHHHHHHhcCC-------CCCCeEEEecCCCC
Confidence 333444444 46778899999999999999988765221 34578999987653
No 204
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.29 E-value=0.0084 Score=66.55 Aligned_cols=98 Identities=14% Similarity=0.260 Sum_probs=57.7
Q ss_pred cceeEEEecCCCchHHHHHHHHHHHHhCC-CCceEEEccc-cccCcCCCccccccccc-cCCCCCCchHHHHHHHHHcCC
Q 003038 656 EETWLFFQGVDADAKEKIAKELARLVFGS-HNNFVSIALS-SFSSTRADSTEDSRNKR-SRDEQSCSYIERFAEAVSNNP 732 (854)
Q Consensus 656 p~~~lLf~Gp~GvGKt~lAr~LA~~lfg~-~~~~i~id~s-~~~~~~~~s~e~~~~~r-l~~~~g~g~~e~L~eav~~~p 732 (854)
+.+.+++.||+|+|||++.++|+..+-.. ...++.++-. ++.-....+ -+.. .++.....|...|..+++.+|
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~----~v~Q~~~g~~~~~~~~~l~~~L~~~p 210 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKS----IVNQREVGEDTKSFADALRAALREDP 210 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSS----EEEEEEBTTTBSCSHHHHHHHTTSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCce----EEEeeecCCCHHHHHHHHHHHhhhCc
Confidence 34689999999999999999999987533 3344444321 111000000 0000 011011244456888888876
Q ss_pred CEEEEEecCCCCCHHHHHHHHHhhhcCe
Q 003038 733 HRVFLIEDVEQADYCSQKGFKRAIESGR 760 (854)
Q Consensus 733 ~~ViliDEieka~~~v~~~Ll~~le~G~ 760 (854)
.+|++||+- +++....++++...|.
T Consensus 211 -d~illdE~~--d~e~~~~~l~~~~~g~ 235 (372)
T 2ewv_A 211 -DVIFVGEMR--DLETVETALRAAETGH 235 (372)
T ss_dssp -SEEEESCCC--SHHHHHHHHHHHTTTC
T ss_pred -CEEEECCCC--CHHHHHHHHHHHhcCC
Confidence 689999997 6665555556555553
No 205
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.19 E-value=0.012 Score=66.97 Aligned_cols=36 Identities=14% Similarity=0.222 Sum_probs=27.9
Q ss_pred HHHHhhcc-CcCCceeecCCCCCHHHHHHHHHHHHHc
Q 003038 218 VIENLMSK-RKRNFVVVGECLASIEGVVRGVIDKIEK 253 (854)
Q Consensus 218 v~~~L~r~-~k~n~vLvGe~GvGKta~v~~la~~i~~ 253 (854)
+|+.|.-- +....+|+|+||||||+++..++..+..
T Consensus 141 ~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~ 177 (473)
T 1sky_E 141 VVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQ 177 (473)
T ss_dssp HHHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccCCEEEEECCCCCCccHHHHHHHhhhhh
Confidence 56665432 3456899999999999999999988764
No 206
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.90 E-value=0.0047 Score=60.68 Aligned_cols=34 Identities=12% Similarity=-0.033 Sum_probs=28.2
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcc
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLS 269 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~ 269 (854)
..++++|+|+||+|||++++.||+++ +..++..|
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l----------~~~~i~~d 37 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT----------KRILYDSD 37 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH----------CCCEEEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh----------CCCEEECh
Confidence 46789999999999999999999885 45677665
No 207
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.86 E-value=0.011 Score=64.55 Aligned_cols=92 Identities=9% Similarity=0.092 Sum_probs=56.2
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccc-cccCcCCCcccccc-ccccCCCCCCchHHHHHHHHHcCCCEE
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALS-SFSSTRADSTEDSR-NKRSRDEQSCSYIERFAEAVSNNPHRV 735 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s-~~~~~~~~s~e~~~-~~rl~~~~g~g~~e~L~eav~~~p~~V 735 (854)
..+++.||+|+|||++.++|+..+- .....|.++.. ++.. ..+. .-.+..+.|......|..+++.+| .+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~-~~~g~i~i~~~~e~~~------~~~~~~i~~~~ggg~~~r~~la~aL~~~p-~i 243 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIP-KEERIISIEDTEEIVF------KHHKNYTQLFFGGNITSADCLKSCLRMRP-DR 243 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSC-TTSCEEEEESSCCCCC------SSCSSEEEEECBTTBCHHHHHHHHTTSCC-SE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc-CCCcEEEECCeecccc------ccchhEEEEEeCCChhHHHHHHHHhhhCC-CE
Confidence 3789999999999999999998774 34566777643 2210 0010 000111112233336778888777 68
Q ss_pred EEEecCCCCCHHHHHHHHHhhhcCe
Q 003038 736 FLIEDVEQADYCSQKGFKRAIESGR 760 (854)
Q Consensus 736 iliDEieka~~~v~~~Ll~~le~G~ 760 (854)
+++||+-- .+++.. ++.+..|.
T Consensus 244 lildE~~~--~e~~~~-l~~~~~g~ 265 (330)
T 2pt7_A 244 IILGELRS--SEAYDF-YNVLCSGH 265 (330)
T ss_dssp EEECCCCS--THHHHH-HHHHHTTC
T ss_pred EEEcCCCh--HHHHHH-HHHHhcCC
Confidence 88999875 456654 45555553
No 208
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.76 E-value=0.012 Score=63.60 Aligned_cols=77 Identities=9% Similarity=0.138 Sum_probs=52.1
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHHHc------------C------C-CCcccCCceEEEccccccccc-chHHHHHHHH
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKIEK------------G------D-VPEALRDVKCLPLSISSFRHM-NRVEVEQRVE 286 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i~~------------~------~-vp~~L~~~~~~~l~~~~l~~~-~rge~E~rl~ 286 (854)
++-++|+||+|||||+++..||+++.. + . -|+.+.++.-+-+|.-.+... ..|+|.+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~a~ 82 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDLAT 82 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHHHH
Confidence 445788999999999999999987521 0 0 113444554444554444443 5789999999
Q ss_pred HHHHHHHhhhCCCeEEEeC
Q 003038 287 EIKNLVRSCLGRGIVLNLG 305 (854)
Q Consensus 287 ~l~~~~~~~~~~~~ILfid 305 (854)
.+++.+.+. +.+.|+++
T Consensus 83 ~~i~~i~~~--gk~pIlVG 99 (322)
T 3exa_A 83 PLITEIHER--GRLPFLVG 99 (322)
T ss_dssp HHHHHHHHT--TCEEEEES
T ss_pred HHHHHHHhC--CCcEEEEc
Confidence 999998875 45555555
No 209
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.76 E-value=0.009 Score=60.07 Aligned_cols=94 Identities=12% Similarity=0.016 Sum_probs=53.2
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccc---cccCcCCCccccccccccC---CCCCCchHHHHHHHHHcC
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALS---SFSSTRADSTEDSRNKRSR---DEQSCSYIERFAEAVSNN 731 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s---~~~~~~~~s~e~~~~~rl~---~~~g~g~~e~L~eav~~~ 731 (854)
-..+++||.|+|||+.+..++...-+...+.+-+... .|. +..-.+++- ......-.+.+.+.+. .
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~-------~~~i~s~~g~~~~a~~~~~~~~i~~~~~-~ 80 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYS-------KEDVVSHMGEKEQAVAIKNSREILKYFE-E 80 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC--------------CEEECTTSCEEECEEESSSTHHHHHCC-T
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccch-------HHHHHhhcCCceeeEeeCCHHHHHHHHh-c
Confidence 3678899999999988887777664444444444311 121 111111110 0000000123444433 3
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHhhhcC
Q 003038 732 PHRVFLIEDVEQADYCSQKGFKRAIESG 759 (854)
Q Consensus 732 p~~ViliDEieka~~~v~~~Ll~~le~G 759 (854)
++.+|+|||+.-.+++....|....+.|
T Consensus 81 ~~dvViIDEaqfl~~~~v~~l~~l~~~~ 108 (191)
T 1xx6_A 81 DTEVIAIDEVQFFDDEIVEIVNKIAESG 108 (191)
T ss_dssp TCSEEEECSGGGSCTHHHHHHHHHHHTT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999888877666655554
No 210
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.69 E-value=0.02 Score=64.02 Aligned_cols=76 Identities=8% Similarity=0.055 Sum_probs=55.7
Q ss_pred CCceeecCCCCCHHHHHHHHHHHHHc----C--------------C-CCcccCCceEEEccccccccc-chHHHHHHHHH
Q 003038 228 RNFVVVGECLASIEGVVRGVIDKIEK----G--------------D-VPEALRDVKCLPLSISSFRHM-NRVEVEQRVEE 287 (854)
Q Consensus 228 ~n~vLvGe~GvGKta~v~~la~~i~~----~--------------~-vp~~L~~~~~~~l~~~~l~~~-~rge~E~rl~~ 287 (854)
+-++|+||+|+|||+++..||.++.. . . -++...++.-+-++.-.+... ..|+|.+....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~a~~ 82 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETECMN 82 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHHHHH
Confidence 45789999999999999999998632 0 1 125566666666666555554 58999999999
Q ss_pred HHHHHHhhhCCCeEEEeC
Q 003038 288 IKNLVRSCLGRGIVLNLG 305 (854)
Q Consensus 288 l~~~~~~~~~~~~ILfid 305 (854)
+++.+.+. +.+.|+++
T Consensus 83 ~i~~i~~~--g~~pilVG 98 (409)
T 3eph_A 83 AIEDIHRR--GKIPIVVG 98 (409)
T ss_dssp HHHHHHTT--TCEEEEEC
T ss_pred HHHHHHhc--CCCEEEEC
Confidence 99999876 45556665
No 211
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.65 E-value=0.097 Score=59.12 Aligned_cols=42 Identities=17% Similarity=0.140 Sum_probs=33.3
Q ss_pred cceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 656 EETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 656 p~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
+..+++|.||+|+|||+++..||..+-.....+.-+++..|.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r 137 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR 137 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 346999999999999999999998886555666666665543
No 212
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.65 E-value=0.019 Score=62.35 Aligned_cols=67 Identities=10% Similarity=0.105 Sum_probs=46.4
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccc-----------------------------ccccc-
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSIS-----------------------------SFRHM- 276 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-----------------------------~l~~~- 276 (854)
++.++|+||+|+|||+++..||.++ +..++++|-- .+...
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l----------~~~iis~Ds~qvy~~~~igTakp~~~e~~gvph~lid~~~~~~~~ 74 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADAL----------PCELISVDSALIYRGMDIGTAKPSRELLARYPHRLIDIRDPAESY 74 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS----------CEEEEEECTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc----------CCcEEeccchhhhcCCCcccCCCCHHHHcCCCEEEeeccCccccc
Confidence 3478999999999999999999874 3456665421 11111
Q ss_pred chHHHHHHHHHHHHHHHhhhCCCeEEEeC
Q 003038 277 NRVEVEQRVEEIKNLVRSCLGRGIVLNLG 305 (854)
Q Consensus 277 ~rge~E~rl~~l~~~~~~~~~~~~ILfid 305 (854)
..++|-+...++++++... +.++|+++
T Consensus 75 ~~~~F~~~a~~~i~~i~~~--g~~~IlvG 101 (323)
T 3crm_A 75 SAAEFRADALAAMAKATAR--GRIPLLVG 101 (323)
T ss_dssp CHHHHHHHHHHHHHHHHHT--TCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHc--CCeEEEEC
Confidence 3577888888888887764 35555554
No 213
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=95.61 E-value=0.018 Score=67.21 Aligned_cols=39 Identities=15% Similarity=0.099 Sum_probs=34.1
Q ss_pred cHHHHHHHHHHhhcc---CcCCceeecCCCCCHHHHHHHHHH
Q 003038 211 RNEDVMYVIENLMSK---RKRNFVVVGECLASIEGVVRGVID 249 (854)
Q Consensus 211 r~~ei~~v~~~L~r~---~k~n~vLvGe~GvGKta~v~~la~ 249 (854)
|++++.++++.|... .-+-+.|+|.+|+|||++|..++.
T Consensus 133 R~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 133 REYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred chHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 999999999999765 235578999999999999999985
No 214
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.57 E-value=0.1 Score=59.05 Aligned_cols=91 Identities=10% Similarity=0.104 Sum_probs=53.6
Q ss_pred cceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCC----ccccccccccCCCCCCchHH---HHHHHH
Q 003038 656 EETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRAD----STEDSRNKRSRDEQSCSYIE---RFAEAV 728 (854)
Q Consensus 656 p~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~----s~e~~~~~rl~~~~g~g~~e---~L~eav 728 (854)
+..+++|.|++|+|||+++..||..+-.......-+++..|...... ..+...+.-...+.+....+ ...+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999999988766667777777655420000 00000000000011111111 223344
Q ss_pred HcCCCEEEEEecCCCCCH
Q 003038 729 SNNPHRVFLIEDVEQADY 746 (854)
Q Consensus 729 ~~~p~~ViliDEieka~~ 746 (854)
+.+.+.||+||..-..+.
T Consensus 179 ~~~~~DvVIIDTaGrl~~ 196 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKE 196 (443)
T ss_dssp HHTTCSEEEEECCCCSSC
T ss_pred HhCCCCEEEEECCCcccc
Confidence 556789999999987763
No 215
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.33 E-value=0.02 Score=75.43 Aligned_cols=91 Identities=13% Similarity=0.009 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHc-CCCCcccCCceEEEccc--ccccccchH---------
Q 003038 212 NEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEK-GDVPEALRDVKCLPLSI--SSFRHMNRV--------- 279 (854)
Q Consensus 212 ~~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~-~~vp~~L~~~~~~~l~~--~~l~~~~rg--------- 279 (854)
-.++..++.+--=.+.+|++|+||||+|||.++.+++....+ |. .+.|+...- ..+.+...|
T Consensus 1412 ~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~------~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~ 1485 (2050)
T 3cmu_A 1412 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK------TCAFIDAEHALDPIYARKLGVDIDNLLCS 1485 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTC------CEEEECTTSCCCHHHHHHTTCCTTTCEEE
T ss_pred CHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCC------cEEEEEcccccCHHHHHHcCCCchhceee
Confidence 344555554222357899999999999999999998876543 21 233444331 111111112
Q ss_pred ---HHHHHHHHHHHHHHhhhCCCeEEEeCccccc
Q 003038 280 ---EVEQRVEEIKNLVRSCLGRGIVLNLGDLEWA 310 (854)
Q Consensus 280 ---e~E~rl~~l~~~~~~~~~~~~ILfidel~~l 310 (854)
..|+-+..+...+++. ++.+||||+|..+
T Consensus 1486 ~~~~~E~~l~~~~~lvr~~--~~~lVVIDsi~al 1517 (2050)
T 3cmu_A 1486 QPDTGEQALEICDALARSG--AVDVIVVDSVAAL 1517 (2050)
T ss_dssp CCSSHHHHHHHHHHHHHHT--CCSEEEESCGGGC
T ss_pred cCChHHHHHHHHHHHHhcC--CCCEEEEcChhHh
Confidence 3345555555666664 6899999999766
No 216
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.24 E-value=0.062 Score=59.68 Aligned_cols=38 Identities=13% Similarity=0.092 Sum_probs=30.7
Q ss_pred HHHHHHhhcc-CcCCceeecCCCCCHHHHHHHHHHHHHc
Q 003038 216 MYVIENLMSK-RKRNFVVVGECLASIEGVVRGVIDKIEK 253 (854)
Q Consensus 216 ~~v~~~L~r~-~k~n~vLvGe~GvGKta~v~~la~~i~~ 253 (854)
-++|+++.-= +.....|+|++|+|||+++..++.-|..
T Consensus 162 iraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 162 ARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp HHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred ceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhh
Confidence 3667776533 5678999999999999999999988765
No 217
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.22 E-value=0.024 Score=57.28 Aligned_cols=26 Identities=8% Similarity=0.263 Sum_probs=22.8
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHH
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
+.+-++|+||+|+|||++++.|+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45668999999999999999999764
No 218
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.22 E-value=0.016 Score=55.45 Aligned_cols=91 Identities=21% Similarity=0.290 Sum_probs=48.1
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccc--ccc----ccccCCCCCCc-hHHHHHHHHHcC
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTE--DSR----NKRSRDEQSCS-YIERFAEAVSNN 731 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e--~~~----~~rl~~~~g~g-~~e~L~eav~~~ 731 (854)
.++|.||+|+|||++|+.| +.+ | +..++++++......... ... ...+....+.. +.+.+.+.+...
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~-g----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 76 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER-G----AKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELGTS 76 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT-T----CEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHH-HHC-C----CcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHHHHHHHhc
Confidence 5789999999999999999 544 3 334444433210000000 000 00000000111 112345555456
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHhhh
Q 003038 732 PHRVFLIEDVEQADYCSQKGFKRAIE 757 (854)
Q Consensus 732 p~~ViliDEieka~~~v~~~Ll~~le 757 (854)
+..+|++|.+ .++.....|.+.+.
T Consensus 77 ~~~~vi~dg~--~~~~~~~~l~~~~~ 100 (179)
T 3lw7_A 77 NHDLVVFDGV--RSLAEVEEFKRLLG 100 (179)
T ss_dssp CCSCEEEECC--CCHHHHHHHHHHHC
T ss_pred CCCeEEEeCC--CCHHHHHHHHHHhC
Confidence 6778999998 66766677777664
No 219
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.19 E-value=0.067 Score=60.25 Aligned_cols=96 Identities=11% Similarity=0.193 Sum_probs=57.7
Q ss_pred cceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccc-cccCcCCCccccccccccC-CCCCCchHHHHHHHHHcCCC
Q 003038 656 EETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALS-SFSSTRADSTEDSRNKRSR-DEQSCSYIERFAEAVSNNPH 733 (854)
Q Consensus 656 p~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s-~~~~~~~~s~e~~~~~rl~-~~~g~g~~e~L~eav~~~p~ 733 (854)
+.+.+++.||+|+|||++.++|+..+-.....++.+.-. +|. -.+.....+ ...++.|.+.|..+++++|
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~-------~~~~~q~~v~~~~g~~f~~~lr~~Lrq~p- 237 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFD-------IDGIGQTQVNPRVDMTFARGLRAILRQDP- 237 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSC-------CSSSEEEECBGGGTBCHHHHHHHHGGGCC-
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhc-------cCCcceEEEccccCcCHHHHHHHHhccCC-
Confidence 346899999999999999999999885444455544321 111 000000001 1123456667788888888
Q ss_pred EEEEEecCCCCCHHHHHHHHHhhhcCeE
Q 003038 734 RVFLIEDVEQADYCSQKGFKRAIESGRI 761 (854)
Q Consensus 734 ~ViliDEieka~~~v~~~Ll~~le~G~l 761 (854)
.+|++.||. +.......+++...|.+
T Consensus 238 d~i~vgEiR--d~et~~~~l~a~~tGhl 263 (418)
T 1p9r_A 238 DVVMVGEIR--DLETAQIAVQASLTGHL 263 (418)
T ss_dssp SEEEESCCC--SHHHHHHHHHHHHTTCE
T ss_pred CeEEEcCcC--CHHHHHHHHHHHHhCCC
Confidence 577889876 44433344455555643
No 220
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.15 E-value=0.013 Score=58.61 Aligned_cols=34 Identities=15% Similarity=0.147 Sum_probs=28.3
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcc
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLS 269 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~ 269 (854)
..++++|+|+||+|||++++.||+++ +..++..|
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l----------~~~~i~~d 57 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL----------NVPFIDLD 57 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH----------TCCEEEHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc----------CCCEEcch
Confidence 45689999999999999999999886 45666654
No 221
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.14 E-value=0.034 Score=56.06 Aligned_cols=35 Identities=6% Similarity=0.107 Sum_probs=26.1
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEc
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIA 692 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id 692 (854)
..+++.||+|+|||++++.|+..+-.....++.++
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 37889999999999999999976643333444444
No 222
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.07 E-value=0.011 Score=57.56 Aligned_cols=34 Identities=15% Similarity=0.343 Sum_probs=27.6
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccc
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSS 695 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~ 695 (854)
.+++.|++|+|||++|++||+.+ + ..++.++.+.
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l-~--~~~~~~~~D~ 38 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVL-P--EPWLAFGVDS 38 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS-S--SCEEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc-C--CCeEEeccch
Confidence 68899999999999999999987 2 3567665543
No 223
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.00 E-value=0.058 Score=57.49 Aligned_cols=25 Identities=8% Similarity=0.191 Sum_probs=22.0
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHH
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
...+||+|+||+|||++++.|+.++
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999999999874
No 224
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.00 E-value=0.015 Score=59.13 Aligned_cols=26 Identities=19% Similarity=0.121 Sum_probs=23.4
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHH
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
+||+.+++||||+|||+++.++|..+
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHh
Confidence 56779999999999999999999875
No 225
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=94.98 E-value=0.036 Score=64.50 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=35.0
Q ss_pred cccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHH
Q 003038 621 PWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELAR 679 (854)
Q Consensus 621 ~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~ 679 (854)
+|-+..+..|...+..... ....++.++|+.|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~---------------~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCD---------------LDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTT---------------SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccC---------------CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 5999888888888754210 2246889999999999999999996
No 226
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.92 E-value=0.036 Score=65.04 Aligned_cols=97 Identities=13% Similarity=0.120 Sum_probs=54.1
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCc---CCCccccccccccCC--CCCCchHHHHHHHHHcCC
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSST---RADSTEDSRNKRSRD--EQSCSYIERFAEAVSNNP 732 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~---~~~s~e~~~~~rl~~--~~g~g~~e~L~eav~~~p 732 (854)
..+++.||+|+|||++++.|+..+-.....++-...+.-... .....+...+.+++. +.++.+ ..-...+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~-----~~~~~~~ 279 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRH-----NHLEPAP 279 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESC-----SSSSCCS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhh-----hhccccc
Confidence 378999999999999999999887654444433321100000 000000001111110 000000 0001125
Q ss_pred CEEEEEecCCCCCHHHHHHHHHhhhcC
Q 003038 733 HRVFLIEDVEQADYCSQKGFKRAIESG 759 (854)
Q Consensus 733 ~~ViliDEieka~~~v~~~Ll~~le~G 759 (854)
+.+|++||+..++...+..|++++..|
T Consensus 280 ~dvlIIDEasml~~~~~~~Ll~~~~~~ 306 (574)
T 3e1s_A 280 YDLLIVDEVSMMGDALMLSLLAAVPPG 306 (574)
T ss_dssp CSEEEECCGGGCCHHHHHHHHTTSCTT
T ss_pred CCEEEEcCccCCCHHHHHHHHHhCcCC
Confidence 789999999999999999998888644
No 227
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.88 E-value=0.03 Score=72.83 Aligned_cols=80 Identities=14% Similarity=0.008 Sum_probs=55.3
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccc--cccc--------ccchHH----HHHHHHHHHHH
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSI--SSFR--------HMNRVE----VEQRVEEIKNL 291 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~--~~l~--------~~~rge----~E~rl~~l~~~ 291 (854)
+.+.++|+||||||||.++.+++..-....-| .-|++++- ..+. ..+.++ -|+.+..++..
T Consensus 1081 ~g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~-----~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ 1155 (1706)
T 3cmw_A 1081 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKT-----CAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDAL 1155 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCC-----EEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCChHHHHHHHHHHhhhcCCc-----eeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHH
Confidence 34458889999999999999988654433111 23444332 1111 234566 78999888888
Q ss_pred HHhhhCCCeEEEeCccccc-cc
Q 003038 292 VRSCLGRGIVLNLGDLEWA-EF 312 (854)
Q Consensus 292 ~~~~~~~~~ILfidel~~l-~~ 312 (854)
+++. .++++|+|+|..| ..
T Consensus 1156 ar~~--~~~~i~~d~~~al~~~ 1175 (1706)
T 3cmw_A 1156 ARSG--AVDVIVVDSVAALTPK 1175 (1706)
T ss_dssp HHHT--CCSEEEESCGGGCCCH
T ss_pred HHhc--CCeEEEeCchHhcCcc
Confidence 8875 7999999999999 44
No 228
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.85 E-value=0.019 Score=56.71 Aligned_cols=36 Identities=8% Similarity=0.158 Sum_probs=28.5
Q ss_pred cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcc
Q 003038 225 KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLS 269 (854)
Q Consensus 225 ~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~ 269 (854)
.+..+++|+|+||+|||++++.|+.++ .|..++.+|
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l---------~g~~~id~d 43 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAEL---------DGFQHLEVG 43 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS---------TTEEEEEHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhc---------CCCEEeeHH
Confidence 356789999999999999999999862 255666654
No 229
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.82 E-value=0.022 Score=55.71 Aligned_cols=26 Identities=12% Similarity=0.037 Sum_probs=23.8
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHH
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
+..+++|+|+||+|||++++.|++++
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999999875
No 230
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.79 E-value=0.056 Score=53.06 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=21.8
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHH
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
.+-++|+||+|+|||++++.|+...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3467899999999999999999865
No 231
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.77 E-value=0.053 Score=53.29 Aligned_cols=27 Identities=11% Similarity=0.020 Sum_probs=23.6
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHHHc
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKIEK 253 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i~~ 253 (854)
...++|+|.||+|||++++.|+..+..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 446899999999999999999998753
No 232
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.77 E-value=0.019 Score=56.25 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=22.2
Q ss_pred eeEEEecCCCchHHHHHHHHHHHH
Q 003038 658 TWLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
..++|.||+|+|||++|+.||+.+
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999999987
No 233
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=94.73 E-value=0.07 Score=66.17 Aligned_cols=40 Identities=15% Similarity=0.119 Sum_probs=34.8
Q ss_pred cHHHHHHHHHHhhc-cCcCCceeecCCCCCHHHHHHHHHHH
Q 003038 211 RNEDVMYVIENLMS-KRKRNFVVVGECLASIEGVVRGVIDK 250 (854)
Q Consensus 211 r~~ei~~v~~~L~r-~~k~n~vLvGe~GvGKta~v~~la~~ 250 (854)
|++++.++.+.|.. ...+-+.|+|++|+|||++|..++..
T Consensus 133 Re~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 99999999999986 34466889999999999999999853
No 234
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.73 E-value=0.046 Score=55.04 Aligned_cols=27 Identities=15% Similarity=-0.130 Sum_probs=23.3
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHH
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIE 252 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~ 252 (854)
....++|+||||+|||+++..++..+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999997664
No 235
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.65 E-value=0.042 Score=72.41 Aligned_cols=84 Identities=8% Similarity=0.038 Sum_probs=48.6
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCc-CCCcccccccccc-CCCCCC--chHHHHHHHHHcCCC
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSST-RADSTEDSRNKRS-RDEQSC--SYIERFAEAVSNNPH 733 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~-~~~s~e~~~~~rl-~~~~g~--g~~e~L~eav~~~p~ 733 (854)
..++|+||+|+|||.||.+++...-......+.++..+.... .... ....+..+ +..+.. -+.+.+...++....
T Consensus 1428 ~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~-~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~~ 1506 (2050)
T 3cmu_A 1428 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARK-LGVDIDNLLCSQPDTGEQALEICDALARSGAV 1506 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHH-TTCCTTTCEEECCSSHHHHHHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHH-cCCCchhceeecCChHHHHHHHHHHHHhcCCC
Confidence 479999999999999999998876554455666665532200 0000 00000011 111111 122244556677788
Q ss_pred EEEEEecCC
Q 003038 734 RVFLIEDVE 742 (854)
Q Consensus 734 ~ViliDEie 742 (854)
+||+||+++
T Consensus 1507 ~lVVIDsi~ 1515 (2050)
T 3cmu_A 1507 DVIVVDSVA 1515 (2050)
T ss_dssp SEEEESCGG
T ss_pred CEEEEcChh
Confidence 999999997
No 236
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.64 E-value=0.069 Score=57.61 Aligned_cols=65 Identities=8% Similarity=0.097 Sum_probs=45.4
Q ss_pred CceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccc-----------------------------cccccc-ch
Q 003038 229 NFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSI-----------------------------SSFRHM-NR 278 (854)
Q Consensus 229 n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~-----------------------------~~l~~~-~r 278 (854)
-++|+||+|+|||+++..||+++ +..+++.|. -.+... ..
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~----------~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~~~e~~s~ 81 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKIL----------PVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQAYSA 81 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS----------CEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCH
T ss_pred EEEEECCCccCHHHHHHHHHHhC----------CCcEEecccccccccccccCCCCCHHHHcCCCEEEeccCCccccccH
Confidence 36789999999999999999884 234555432 222222 57
Q ss_pred HHHHHHHHHHHHHHHhhhCCCeEEEeC
Q 003038 279 VEVEQRVEEIKNLVRSCLGRGIVLNLG 305 (854)
Q Consensus 279 ge~E~rl~~l~~~~~~~~~~~~ILfid 305 (854)
|+|.+....+++.+.+. +.+.|+++
T Consensus 82 ~~f~~~a~~~i~~i~~~--g~~pilVG 106 (316)
T 3foz_A 82 ADFRRDALAEMADITAA--GRIPLLVG 106 (316)
T ss_dssp HHHHHHHHHHHHHHHHT--TCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhC--CCcEEEEc
Confidence 88888888888888875 34555554
No 237
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.63 E-value=0.024 Score=55.24 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=22.0
Q ss_pred CCceeecCCCCCHHHHHHHHHHHH
Q 003038 228 RNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 228 ~n~vLvGe~GvGKta~v~~la~~i 251 (854)
++++|+|+||+|||++++.||.++
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 379999999999999999999875
No 238
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.62 E-value=0.12 Score=58.48 Aligned_cols=98 Identities=7% Similarity=0.116 Sum_probs=56.2
Q ss_pred CcceeEEEecCCCchHHHHHHHHHHHHhCC-CCceEEEccccccCcCCCc----cccccccccC-CCCCCchHHH---HH
Q 003038 655 KEETWLFFQGVDADAKEKIAKELARLVFGS-HNNFVSIALSSFSSTRADS----TEDSRNKRSR-DEQSCSYIER---FA 725 (854)
Q Consensus 655 kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~-~~~~i~id~s~~~~~~~~s----~e~~~~~rl~-~~~g~g~~e~---L~ 725 (854)
++...++|.|+.|+|||+++-.||..+-.. ..+..-+|+..|....... .....+ .++ .+.+..-.+. ..
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l-~v~~~~~~~dp~~i~~~~l 176 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGV-DFFPSDVGQKPVDIVNAAL 176 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTC-EECCCCSSSCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCe-eEEeCCCCCCHHHHHHHHH
Confidence 345688999999999999999999888655 5677778877654210000 000000 011 1111111122 23
Q ss_pred HHHHcCCCEEEEEecCCCCCH--HHHHHHH
Q 003038 726 EAVSNNPHRVFLIEDVEQADY--CSQKGFK 753 (854)
Q Consensus 726 eav~~~p~~ViliDEieka~~--~v~~~Ll 753 (854)
+.++...|.+||||=.-..+. ...+.|.
T Consensus 177 ~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~ 206 (433)
T 2xxa_A 177 KEAKLKFYDVLLVDTAGRLHVDEAMMDEIK 206 (433)
T ss_dssp HHHHHTTCSEEEEECCCCCTTCHHHHHHHH
T ss_pred HHHHhCCCCEEEEECCCcccccHHHHHHHH
Confidence 334446789999998766543 3444443
No 239
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=94.61 E-value=0.016 Score=58.65 Aligned_cols=21 Identities=5% Similarity=0.017 Sum_probs=17.3
Q ss_pred ceeecCCCCCHHHHHHHHHHH
Q 003038 230 FVVVGECLASIEGVVRGVIDK 250 (854)
Q Consensus 230 ~vLvGe~GvGKta~v~~la~~ 250 (854)
.+++|+||+|||+++...+..
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 478999999999998776544
No 240
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.61 E-value=0.037 Score=55.80 Aligned_cols=27 Identities=19% Similarity=0.103 Sum_probs=23.2
Q ss_pred cCcCCceeecCCCCCHHHHHHHHHHHH
Q 003038 225 KRKRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 225 ~~k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
+...-++|+||+|+|||++++.|+...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 345668999999999999999999875
No 241
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.56 E-value=0.063 Score=56.05 Aligned_cols=23 Identities=4% Similarity=0.093 Sum_probs=21.0
Q ss_pred CceeecCCCCCHHHHHHHHHHHH
Q 003038 229 NFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 229 n~vLvGe~GvGKta~v~~la~~i 251 (854)
.++|+|+||+|||++++.||.++
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 47899999999999999999875
No 242
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.55 E-value=0.085 Score=53.67 Aligned_cols=26 Identities=8% Similarity=-0.023 Sum_probs=22.8
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHH
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
...-++|+||||+|||+++..++..+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 56678999999999999999999764
No 243
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.52 E-value=0.024 Score=56.68 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=22.5
Q ss_pred eeEEEecCCCchHHHHHHHHHHHH
Q 003038 658 TWLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
..++|.||+|+|||++++.||+.+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999988
No 244
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.51 E-value=0.044 Score=55.30 Aligned_cols=37 Identities=19% Similarity=0.089 Sum_probs=27.6
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhC------CCCceEEEccc
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFG------SHNNFVSIALS 694 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg------~~~~~i~id~s 694 (854)
..+.+.||+|+|||++++.|+..+.- .....+.++..
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~ 68 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 68 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECC
Confidence 48899999999999999999986532 12345666543
No 245
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.48 E-value=0.053 Score=54.29 Aligned_cols=40 Identities=13% Similarity=0.172 Sum_probs=29.6
Q ss_pred ceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccc
Q 003038 657 ETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSF 696 (854)
Q Consensus 657 ~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~ 696 (854)
...+.+.|++|+|||++++.|+..+-.....++.+++..+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~ 61 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH 61 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence 3488999999999999999999987433334555555443
No 246
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.41 E-value=0.015 Score=58.31 Aligned_cols=24 Identities=13% Similarity=0.277 Sum_probs=21.9
Q ss_pred eEEEecCCCchHHHHHHHHHHHHh
Q 003038 659 WLFFQGVDADAKEKIAKELARLVF 682 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lf 682 (854)
.+.|.||+|+|||++.+.|+..+-
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 578999999999999999999874
No 247
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.40 E-value=0.024 Score=55.55 Aligned_cols=37 Identities=11% Similarity=0.077 Sum_probs=28.6
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccc
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSS 695 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~ 695 (854)
.++|.|++|+|||++|+.|++.+-.....+..+++++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~ 39 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGD 39 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECCh
Confidence 5789999999999999999998843333466666443
No 248
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.35 E-value=0.037 Score=53.67 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=27.9
Q ss_pred ceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccc
Q 003038 657 ETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSF 696 (854)
Q Consensus 657 ~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~ 696 (854)
...+++.||+|+|||++++.|+..+ | .+.+|...+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~-g----~~~i~~d~~ 42 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL-H----AAFLDGDFL 42 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH-T----CEEEEGGGG
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh-C----cEEEeCccc
Confidence 3478999999999999999999986 3 456665544
No 249
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.33 E-value=0.03 Score=54.87 Aligned_cols=32 Identities=19% Similarity=0.125 Sum_probs=26.4
Q ss_pred CCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcc
Q 003038 228 RNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLS 269 (854)
Q Consensus 228 ~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~ 269 (854)
..++|+|+||+|||++++.|+.++ |..++..|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l----------g~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL----------GVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH----------TCCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc----------CCCEEeCc
Confidence 468999999999999999999875 45566655
No 250
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.27 E-value=0.089 Score=54.72 Aligned_cols=24 Identities=13% Similarity=0.037 Sum_probs=21.5
Q ss_pred CCceeecCCCCCHHHHHHHHHHHH
Q 003038 228 RNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 228 ~n~vLvGe~GvGKta~v~~la~~i 251 (854)
..++|+|+||+|||++++.|+.++
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 357999999999999999999875
No 251
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.26 E-value=0.032 Score=57.03 Aligned_cols=97 Identities=10% Similarity=-0.017 Sum_probs=51.5
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccC-CCC--CCchHHHHHHHHHcCCCEE
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSR-DEQ--SCSYIERFAEAVSNNPHRV 735 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~-~~~--g~g~~e~L~eav~~~p~~V 735 (854)
..+++||.|.|||+.+..++...-+...+.+-+...--..+. +..-.+++- .-. .....+.+.+.+. .++.|
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~g----e~~i~s~~g~~~~a~~~~~~~~~~~~~~-~~~dv 104 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYS----EEDVVSHNGLKVKAVPVSASKDIFKHIT-EEMDV 104 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC---------------------CCEEECSSGGGGGGGCC-SSCCE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcch----HHHHHhhcCCeeEEeecCCHHHHHHHHh-cCCCE
Confidence 456899999999988888887665555555555322111000 111111110 000 0000112223222 36899
Q ss_pred EEEecCCCCCHHHHHHHHHhhhcCe
Q 003038 736 FLIEDVEQADYCSQKGFKRAIESGR 760 (854)
Q Consensus 736 iliDEieka~~~v~~~Ll~~le~G~ 760 (854)
|+|||+.-.+++....|..+.+.|.
T Consensus 105 ViIDEaQF~~~~~V~~l~~l~~~~~ 129 (214)
T 2j9r_A 105 IAIDEVQFFDGDIVEVVQVLANRGY 129 (214)
T ss_dssp EEECCGGGSCTTHHHHHHHHHHTTC
T ss_pred EEEECcccCCHHHHHHHHHHhhCCC
Confidence 9999999998887777766566553
No 252
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.22 E-value=0.038 Score=55.09 Aligned_cols=26 Identities=15% Similarity=0.135 Sum_probs=23.2
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHH
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
....++|+|+||+|||++++.|+.++
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999999885
No 253
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.19 E-value=0.03 Score=54.02 Aligned_cols=24 Identities=8% Similarity=0.123 Sum_probs=22.3
Q ss_pred CCceeecCCCCCHHHHHHHHHHHH
Q 003038 228 RNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 228 ~n~vLvGe~GvGKta~v~~la~~i 251 (854)
.|++|.|.||+|||++++.||.++
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999875
No 254
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.15 E-value=0.031 Score=53.51 Aligned_cols=22 Identities=5% Similarity=0.067 Sum_probs=19.5
Q ss_pred CCceeecCCCCCHHHHHHHHHHH
Q 003038 228 RNFVVVGECLASIEGVVRGVIDK 250 (854)
Q Consensus 228 ~n~vLvGe~GvGKta~v~~la~~ 250 (854)
..++|+|+||+|||++++.| .+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 46899999999999999999 54
No 255
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.12 E-value=0.16 Score=59.45 Aligned_cols=28 Identities=21% Similarity=0.171 Sum_probs=24.6
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHc
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEK 253 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~ 253 (854)
..++.+|.|+||+|||+++..++..+..
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~ 230 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAES 230 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3578999999999999999999987765
No 256
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.11 E-value=0.035 Score=58.61 Aligned_cols=41 Identities=10% Similarity=0.159 Sum_probs=29.8
Q ss_pred CCCCcHHHHHH-HHHHhhcc-C-cCCceeecCCCCCHHHHHHHHHHH
Q 003038 207 LDPIRNEDVMY-VIENLMSK-R-KRNFVVVGECLASIEGVVRGVIDK 250 (854)
Q Consensus 207 ldpvr~~ei~~-v~~~L~r~-~-k~n~vLvGe~GvGKta~v~~la~~ 250 (854)
+||+ .+.. +...|.++ . ||+++|+||||+|||.++.+||..
T Consensus 84 ~~~~---~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 84 YDPQ---YAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp CCHH---HHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCHH---HHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 5663 3333 44444544 3 667999999999999999999986
No 257
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.09 E-value=0.041 Score=54.93 Aligned_cols=40 Identities=10% Similarity=0.212 Sum_probs=29.4
Q ss_pred ceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccc
Q 003038 657 ETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSF 696 (854)
Q Consensus 657 ~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~ 696 (854)
...+.|.||+|+|||++++.||..+.......+.+|...+
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 3478899999999999999999998632233246665433
No 258
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.09 E-value=0.055 Score=56.31 Aligned_cols=37 Identities=22% Similarity=0.227 Sum_probs=29.2
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..++|.|++|+|||++|+.|++.+. ...+.+|...+.
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l~---~~~~~~~~D~~r 69 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEFQ---GNIVIIDGDSFR 69 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHTT---TCCEEECGGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC---CCcEEEecHHHH
Confidence 5789999999999999999999873 234666665553
No 259
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.07 E-value=0.074 Score=53.53 Aligned_cols=28 Identities=7% Similarity=0.071 Sum_probs=24.7
Q ss_pred cCcCCceeecCCCCCHHHHHHHHHHHHH
Q 003038 225 KRKRNFVVVGECLASIEGVVRGVIDKIE 252 (854)
Q Consensus 225 ~~k~n~vLvGe~GvGKta~v~~la~~i~ 252 (854)
.....++|+|+||+|||++++.|+..+.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4566889999999999999999999875
No 260
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.06 E-value=0.031 Score=54.90 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=22.3
Q ss_pred eeEEEecCCCchHHHHHHHHHHHH
Q 003038 658 TWLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
..++|.|++|+|||++|+.|++.+
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 378999999999999999999987
No 261
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=94.02 E-value=0.085 Score=66.68 Aligned_cols=41 Identities=10% Similarity=0.024 Sum_probs=34.4
Q ss_pred cHHHHHHHHHHhhcc--CcCCceeecCCCCCHHHHHHHHHHHH
Q 003038 211 RNEDVMYVIENLMSK--RKRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 211 r~~ei~~v~~~L~r~--~k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
|++++.++.+.|... ..+-+.|+|++|+|||++|..++.+.
T Consensus 129 R~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~ 171 (1249)
T 3sfz_A 129 RKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDH 171 (1249)
T ss_dssp CHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcCh
Confidence 999999999999643 33457799999999999999988763
No 262
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.02 E-value=0.22 Score=53.38 Aligned_cols=88 Identities=9% Similarity=0.080 Sum_probs=50.8
Q ss_pred ceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCC----ccccccccccCC-CCCCchHH---HHHHHH
Q 003038 657 ETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRAD----STEDSRNKRSRD-EQSCSYIE---RFAEAV 728 (854)
Q Consensus 657 ~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~----s~e~~~~~rl~~-~~g~g~~e---~L~eav 728 (854)
..+++|.|++|+|||+++..||..+-........+|+.-+...... ..+...+. ++. +.+..-.+ ...+.+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~-v~~~~~~~~p~~~~~~~l~~~ 176 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVP-VYGEPGEKDVVGIAKRGVEKF 176 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCC-EECCTTCCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeE-EEecCCCCCHHHHHHHHHHHH
Confidence 4588889999999999999999888655556666776644310000 00000000 111 11111112 233444
Q ss_pred HcCCCEEEEEecCCCCC
Q 003038 729 SNNPHRVFLIEDVEQAD 745 (854)
Q Consensus 729 ~~~p~~ViliDEieka~ 745 (854)
+...|.+|+||=.-..+
T Consensus 177 ~~~~~D~ViIDTpg~~~ 193 (297)
T 1j8m_F 177 LSEKMEIIIVDTAGRHG 193 (297)
T ss_dssp HHTTCSEEEEECCCSCC
T ss_pred HhCCCCEEEEeCCCCcc
Confidence 44778999999877666
No 263
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.99 E-value=0.027 Score=54.16 Aligned_cols=23 Identities=9% Similarity=0.052 Sum_probs=21.3
Q ss_pred CceeecCCCCCHHHHHHHHHHHH
Q 003038 229 NFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 229 n~vLvGe~GvGKta~v~~la~~i 251 (854)
.++|+|+||+|||++++.|++++
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999999875
No 264
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.99 E-value=0.1 Score=56.52 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=33.3
Q ss_pred CcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccc
Q 003038 655 KEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSF 696 (854)
Q Consensus 655 kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~ 696 (854)
++..+++|.||+|+|||+++..||..+-.....+.-+|+.-+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 345689999999999999999999987655566666776644
No 265
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.99 E-value=0.032 Score=54.61 Aligned_cols=24 Identities=8% Similarity=-0.021 Sum_probs=22.2
Q ss_pred eEEEecCCCchHHHHHHHHHHHHh
Q 003038 659 WLFFQGVDADAKEKIAKELARLVF 682 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lf 682 (854)
.++|.|++|+|||++++.||+.+-
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999873
No 266
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.96 E-value=0.065 Score=57.11 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=28.1
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccc
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSF 696 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~ 696 (854)
..++|.||+|+|||++|+.|++.+- ..++.|+...+
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~D~~ 69 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDNDTF 69 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECTHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEechHh
Confidence 4789999999999999999998762 24566765433
No 267
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=93.95 E-value=0.091 Score=54.21 Aligned_cols=22 Identities=9% Similarity=-0.077 Sum_probs=19.9
Q ss_pred EEEecCCCchHHHHHHHHHHHH
Q 003038 660 LFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 660 lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
++++||+|+|||.+|..++..+
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS
T ss_pred EEEEeCCCCCHHHHHHHHHHHc
Confidence 7899999999999999888765
No 268
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=93.94 E-value=0.071 Score=53.79 Aligned_cols=23 Identities=9% Similarity=-0.006 Sum_probs=19.4
Q ss_pred eEEEecCCCchHHHHHHHHHHHH
Q 003038 659 WLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
..||.|++|+|||.+|..++...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 67899999999999998875543
No 269
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=93.82 E-value=0.18 Score=55.50 Aligned_cols=86 Identities=9% Similarity=-0.041 Sum_probs=49.3
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccc--cccccC-CCCCCchHH---HHHHHHHcC
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDS--RNKRSR-DEQSCSYIE---RFAEAVSNN 731 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~--~~~rl~-~~~g~g~~e---~L~eav~~~ 731 (854)
..++++||+|+|||+|+..++..+-......+.++..+-.... -.... ...++. ..+. ...+ .+...++..
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~--ra~rlgv~~~~l~i~~~~-~~e~~l~~~~~l~~~~ 138 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV--YAKNLGVDLKSLLISQPD-HGEQALEIVDELVRSG 138 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH--HHHHHTCCGGGCEEECCS-SHHHHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH--HHHHcCCchhhhhhhhcc-CHHHHHHHHHHHhhhc
Confidence 4789999999999999999998775444566777654322000 00000 001111 1111 1222 233344456
Q ss_pred CCEEEEEecCCCCCH
Q 003038 732 PHRVFLIEDVEQADY 746 (854)
Q Consensus 732 p~~ViliDEieka~~ 746 (854)
...+|+||.+-.+.+
T Consensus 139 ~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 139 VVDLIVVDSVAALVP 153 (356)
T ss_dssp CCSEEEEECTTTCCC
T ss_pred CCCeEEehHhhhhcC
Confidence 678999999987764
No 270
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.82 E-value=0.066 Score=54.51 Aligned_cols=38 Identities=16% Similarity=0.017 Sum_probs=28.9
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhC------CCCceEEEcccc
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFG------SHNNFVSIALSS 695 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg------~~~~~i~id~s~ 695 (854)
..++|.||+|+|||++++.|+..+.- .....+.++...
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 47899999999999999999985321 135667777554
No 271
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.76 E-value=0.035 Score=53.26 Aligned_cols=23 Identities=22% Similarity=0.405 Sum_probs=21.5
Q ss_pred eEEEecCCCchHHHHHHHHHHHH
Q 003038 659 WLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
.++|.||+|+|||++|+.|++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999987
No 272
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=93.75 E-value=0.23 Score=57.84 Aligned_cols=45 Identities=22% Similarity=0.278 Sum_probs=35.0
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHH
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELA 678 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA 678 (854)
..++|-+..+..|...+.... ....+++++||.|+|||+||+.++
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~----------------~~~~~v~I~G~~GiGKTtLa~~~~ 168 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLK----------------GEPGWVTIHGMAGCGKSVLAAEAV 168 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTST----------------TSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CeecccHHHHHHHHHHHhccc----------------CCCceEEEEcCCCCCHHHHHHHHH
Confidence 457899988888887765321 123478999999999999999987
No 273
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.69 E-value=0.23 Score=54.47 Aligned_cols=40 Identities=5% Similarity=0.034 Sum_probs=29.8
Q ss_pred HHHHHHHHhhcc--CcCCceeecCCCCCHHHHHHHHHHHHHc
Q 003038 214 DVMYVIENLMSK--RKRNFVVVGECLASIEGVVRGVIDKIEK 253 (854)
Q Consensus 214 ei~~v~~~L~r~--~k~n~vLvGe~GvGKta~v~~la~~i~~ 253 (854)
..+.++.-|... +...++|+|.||||||+++..|+..+..
T Consensus 64 ~~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 64 QAQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp HHHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 355556555533 3446899999999999999999988754
No 274
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.68 E-value=0.045 Score=57.15 Aligned_cols=31 Identities=19% Similarity=0.283 Sum_probs=25.0
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCCCceEEEc
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSHNNFVSIA 692 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id 692 (854)
.+++.||+|+|||++|+.||+.+ + ..++..|
T Consensus 3 li~I~G~~GSGKSTla~~La~~~-~--~~~i~~D 33 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET-G--WPVVALD 33 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH-C--CCEEECC
T ss_pred EEEEECCCCcCHHHHHHHHHhcC-C--CeEEecc
Confidence 57899999999999999999987 3 3455444
No 275
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.68 E-value=0.045 Score=53.84 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=23.3
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHH
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
+...++|+|+||+|||++++.|++++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999874
No 276
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.64 E-value=0.051 Score=52.38 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=21.9
Q ss_pred CCceeecCCCCCHHHHHHHHHHHH
Q 003038 228 RNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 228 ~n~vLvGe~GvGKta~v~~la~~i 251 (854)
+.++|+|+||+|||++++.|+.++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999875
No 277
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.63 E-value=0.036 Score=55.42 Aligned_cols=24 Identities=13% Similarity=0.256 Sum_probs=21.3
Q ss_pred CCceeecCCCCCHHHHHHHHHHHH
Q 003038 228 RNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 228 ~n~vLvGe~GvGKta~v~~la~~i 251 (854)
|.+||+||+|||||+|++.|..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999998764
No 278
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.59 E-value=0.15 Score=55.68 Aligned_cols=76 Identities=17% Similarity=0.197 Sum_probs=44.9
Q ss_pred CCceeecCCCCCHHHHHHHHHHHHHc----CC-------C--------CcccCCceEEEccccccccc-chHHHHHHHHH
Q 003038 228 RNFVVVGECLASIEGVVRGVIDKIEK----GD-------V--------PEALRDVKCLPLSISSFRHM-NRVEVEQRVEE 287 (854)
Q Consensus 228 ~n~vLvGe~GvGKta~v~~la~~i~~----~~-------v--------p~~L~~~~~~~l~~~~l~~~-~rge~E~rl~~ 287 (854)
..++|+||+|+|||+++..||.++.. .| + ++...++.-.-+++-..... ..++|.+....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~di~~~~~~~~~~dF~~~a~~ 87 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDASFSAYEFKKRAEK 87 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSSCBCTTSCCCHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHHHHHHHHHHhCCccccCHHHHHHHHHH
Confidence 46889999999999999999988531 00 0 12222222111111111112 56788777777
Q ss_pred HHHHHHhhhCCCeEEEeC
Q 003038 288 IKNLVRSCLGRGIVLNLG 305 (854)
Q Consensus 288 l~~~~~~~~~~~~ILfid 305 (854)
.+..+... +.++|+++
T Consensus 88 ~i~~i~~~--g~~~IlvG 103 (340)
T 3d3q_A 88 YIKDITRR--GKVPIIAG 103 (340)
T ss_dssp HHHHHHHT--TCEEEEEC
T ss_pred HHHHHHhC--CCcEEEEC
Confidence 77777653 45666666
No 279
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.56 E-value=0.049 Score=55.09 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=23.1
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHH
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
+..+++|+|+||+|||++++.|+.++
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45679999999999999999999875
No 280
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.56 E-value=0.13 Score=55.90 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=28.0
Q ss_pred cceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEc
Q 003038 656 EETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIA 692 (854)
Q Consensus 656 p~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id 692 (854)
+...+.|.||+|+|||++++.||..+-.....+.-.+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g 164 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAA 164 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3458999999999999999999988754433433333
No 281
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.55 E-value=0.12 Score=56.78 Aligned_cols=41 Identities=10% Similarity=-0.040 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHc
Q 003038 213 EDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEK 253 (854)
Q Consensus 213 ~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~ 253 (854)
.++.+++.+-.=...+.++|+|+||+|||+++..++..+.+
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~ 87 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQA 87 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 55665553111125677999999999999999999877764
No 282
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.54 E-value=0.046 Score=54.46 Aligned_cols=34 Identities=18% Similarity=0.321 Sum_probs=27.0
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccc
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSF 696 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~ 696 (854)
..++|.|++|+|||++|+.|++.+ | +..++...+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l-g----~~~i~~d~~ 52 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC-G----YPFIEGDAL 52 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH-T----CCEEEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-C----CEEEeCCcC
Confidence 378999999999999999999987 3 345555544
No 283
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.54 E-value=0.17 Score=54.32 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=26.4
Q ss_pred cceeEEEecCCCchHHHHHHHHHHHHhCCCCce
Q 003038 656 EETWLFFQGVDADAKEKIAKELARLVFGSHNNF 688 (854)
Q Consensus 656 p~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~ 688 (854)
+...+.|.||+|+|||++++.||..+-.....+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V 131 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKV 131 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 445899999999999999999999875433333
No 284
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.50 E-value=0.056 Score=53.94 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=27.6
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccc
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSF 696 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~ 696 (854)
..+.+.||+|+|||++++.|+..+ | .+.++...+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~-g----~~~i~~d~~ 63 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADET-G----LEFAEADAF 63 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH-C----CEEEEGGGG
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh-C----CeEEccccc
Confidence 478899999999999999999987 3 456665544
No 285
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.49 E-value=0.039 Score=53.30 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=22.4
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHH
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
+.+++|+|+||+|||++++.|+..+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999999874
No 286
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.49 E-value=0.067 Score=53.75 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=23.0
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHh
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVF 682 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lf 682 (854)
..+.+.||+|+|||++++.|+..+-
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4788999999999999999999885
No 287
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.41 E-value=0.23 Score=57.15 Aligned_cols=41 Identities=17% Similarity=0.243 Sum_probs=29.5
Q ss_pred cceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccc
Q 003038 656 EETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSF 696 (854)
Q Consensus 656 p~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~ 696 (854)
+...++|+|++|+|||+++..||..+-....+...+++..|
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~ 140 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTF 140 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 44689999999999999999999877533345555555433
No 288
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.39 E-value=0.073 Score=52.25 Aligned_cols=38 Identities=18% Similarity=0.216 Sum_probs=29.1
Q ss_pred ceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccc
Q 003038 657 ETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALS 694 (854)
Q Consensus 657 ~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s 694 (854)
...++|.|++|+|||++++.||+.+-.....++.+|..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 34788999999999999999999885444445555543
No 289
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.36 E-value=0.056 Score=52.72 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=22.1
Q ss_pred eeEEEecCCCchHHHHHHHHHHHH
Q 003038 658 TWLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
..++|.|++|+|||++++.||+.+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh
Confidence 368899999999999999999987
No 290
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.36 E-value=0.055 Score=53.85 Aligned_cols=26 Identities=12% Similarity=0.093 Sum_probs=22.9
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHH
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
.+..++|+|+||+|||++++.|+.++
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44578999999999999999999875
No 291
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.33 E-value=0.042 Score=54.83 Aligned_cols=29 Identities=7% Similarity=-0.023 Sum_probs=25.3
Q ss_pred ccCcCCceeecCCCCCHHHHHHHHHHHHH
Q 003038 224 SKRKRNFVVVGECLASIEGVVRGVIDKIE 252 (854)
Q Consensus 224 r~~k~n~vLvGe~GvGKta~v~~la~~i~ 252 (854)
......++|+|++|+|||++++.|+..+.
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35667889999999999999999998874
No 292
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.29 E-value=0.048 Score=55.20 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=22.8
Q ss_pred ceeEEEecCCCchHHHHHHHHHHHH
Q 003038 657 ETWLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 657 ~~~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
...++|.|++|+|||++|+.||+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3478999999999999999999987
No 293
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.27 E-value=0.082 Score=52.90 Aligned_cols=73 Identities=11% Similarity=-0.032 Sum_probs=0.0
Q ss_pred cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccccc-------------------------cccc--c
Q 003038 225 KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISS-------------------------FRHM--N 277 (854)
Q Consensus 225 ~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~-------------------------l~~~--~ 277 (854)
....-++|+|+||+|||+++..++. ..+..++-++... .... .
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~----------~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL----------LSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTPSD 87 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH----------HHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEECCTT
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH----------HcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEecCC
Q ss_pred hHHHHHHHHHHHHHHHhhhCCCeEEEeCccccc
Q 003038 278 RVEVEQRVEEIKNLVRSCLGRGIVLNLGDLEWA 310 (854)
Q Consensus 278 rge~E~rl~~l~~~~~~~~~~~~ILfidel~~l 310 (854)
-.+..+++..+...+.+. +-+|+|||+..+
T Consensus 88 ~~~~~~~~~~~~~l~~~~---~~lliiD~~~~~ 117 (220)
T 2cvh_A 88 FKEQRRVIGSLKKTVDSN---FALVVVDSITAH 117 (220)
T ss_dssp TSHHHHHHHHHHHHCCTT---EEEEEEECCCCC
T ss_pred HHHHHHHHHHHHHHhhcC---CCEEEEcCcHHH
No 294
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.26 E-value=0.12 Score=53.98 Aligned_cols=27 Identities=7% Similarity=0.011 Sum_probs=23.7
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHHHc
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKIEK 253 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i~~ 253 (854)
...++|+|.||+|||++++.|+.++..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~ 30 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSK 30 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 457899999999999999999998753
No 295
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.23 E-value=0.04 Score=54.07 Aligned_cols=26 Identities=8% Similarity=0.117 Sum_probs=23.0
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHH
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
.+..++|+|+||+|||++++.|++++
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 34578999999999999999999875
No 296
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.20 E-value=0.043 Score=54.56 Aligned_cols=25 Identities=8% Similarity=0.069 Sum_probs=21.0
Q ss_pred CceeecCCCCCHHHHHHHHHHHHHc
Q 003038 229 NFVVVGECLASIEGVVRGVIDKIEK 253 (854)
Q Consensus 229 n~vLvGe~GvGKta~v~~la~~i~~ 253 (854)
-.+++|++|+|||+++-.++.+...
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999888877643
No 297
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.17 E-value=0.052 Score=53.04 Aligned_cols=25 Identities=8% Similarity=0.061 Sum_probs=22.1
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHH
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
...++|+|+||+|||++++.|+++.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999999874
No 298
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.11 E-value=0.061 Score=51.83 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=22.7
Q ss_pred ceeEEEecCCCchHHHHHHHHHHHH
Q 003038 657 ETWLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 657 ~~~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
..++++.|++|+|||++|+.||+.+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999987
No 299
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.10 E-value=0.048 Score=53.27 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=23.2
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHHH
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKIE 252 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i~ 252 (854)
...++|.|+||+|||++++.|+.++.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35689999999999999999999874
No 300
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.10 E-value=0.054 Score=54.51 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=20.4
Q ss_pred CceeecCCCCCHHHHHHHHHHH
Q 003038 229 NFVVVGECLASIEGVVRGVIDK 250 (854)
Q Consensus 229 n~vLvGe~GvGKta~v~~la~~ 250 (854)
+++|+|+||+|||++++.|+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999977
No 301
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.08 E-value=0.076 Score=51.76 Aligned_cols=37 Identities=8% Similarity=0.148 Sum_probs=28.7
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccc
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALS 694 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s 694 (854)
..+.|.|++|+|||++++.|+..+....-+++.+|..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~ 42 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 42 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECCh
Confidence 3678999999999999999999875333456666643
No 302
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.06 E-value=0.05 Score=54.28 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=23.5
Q ss_pred cCcCCceeecCCCCCHHHHHHHHHHHH
Q 003038 225 KRKRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 225 ~~k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
+....++|+|++|+|||++++.|+..+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 456789999999999999999999875
No 303
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.05 E-value=0.047 Score=53.61 Aligned_cols=36 Identities=28% Similarity=0.324 Sum_probs=28.0
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccc
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSF 696 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~ 696 (854)
..+.+.||+|+|||++++.|+.. ++ ...+.++...+
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~-~~--~g~i~i~~d~~ 45 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL-PG--VPKVHFHSDDL 45 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC-SS--SCEEEECTTHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhc-cC--CCeEEEcccch
Confidence 47889999999999999999986 33 34567765543
No 304
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.04 E-value=0.23 Score=54.77 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=26.5
Q ss_pred cceeEEEecCCCchHHHHHHHHHHHHhCCCCce
Q 003038 656 EETWLFFQGVDADAKEKIAKELARLVFGSHNNF 688 (854)
Q Consensus 656 p~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~ 688 (854)
+..++.|.||+|+|||++++.||..+-.....+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V 188 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKV 188 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEE
Confidence 445899999999999999999999875433333
No 305
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.03 E-value=0.051 Score=54.09 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=26.2
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccc
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSS 695 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~ 695 (854)
..++|.|++|+|||++|+.|++.+ | +..++++.
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~-g----~~~i~~d~ 48 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDY-S----FVHLSAGD 48 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS-S----CEEEEHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc-C----ceEEeHHH
Confidence 478999999999999999999876 3 34555443
No 306
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.98 E-value=0.063 Score=52.52 Aligned_cols=25 Identities=16% Similarity=0.080 Sum_probs=22.2
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHH
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
...++|+|+||+|||++++.|+.++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999999999874
No 307
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.96 E-value=0.054 Score=53.00 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=21.6
Q ss_pred eEEEecCCCchHHHHHHHHHHHH
Q 003038 659 WLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
.++|.|++|+|||++|+.|++.+
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999999986
No 308
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.95 E-value=0.06 Score=52.62 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=21.5
Q ss_pred eEEEecCCCchHHHHHHHHHHHH
Q 003038 659 WLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
.++|.|++|+|||++|+.||+.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999987
No 309
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=92.94 E-value=0.28 Score=54.17 Aligned_cols=85 Identities=9% Similarity=0.023 Sum_probs=47.2
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcC-CCccccccccccC-CCCCCchHH---HHHHHHHcCCC
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTR-ADSTEDSRNKRSR-DEQSCSYIE---RFAEAVSNNPH 733 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~-~~s~e~~~~~rl~-~~~g~g~~e---~L~eav~~~p~ 733 (854)
.++++||+|+|||.+|..+|..+-......+.++...-.... ... -.....+++ ..+. ...+ .+...++....
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~-~g~d~~~l~i~~~~-~~e~~l~~l~~l~~~~~~ 153 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARA-LGVNTDELLVSQPD-NGEQALEIMELLVRSGAI 153 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHH-TTCCGGGCEEECCS-SHHHHHHHHHHHHTTTCC
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHH-cCCCHHHceeecCC-cHHHHHHHHHHHHhcCCC
Confidence 678899999999999999987764334466666654321000 000 000011111 1111 1222 23333445678
Q ss_pred EEEEEecCCCCC
Q 003038 734 RVFLIEDVEQAD 745 (854)
Q Consensus 734 ~ViliDEieka~ 745 (854)
.+|+||.+.-+.
T Consensus 154 ~lVVIDsl~~l~ 165 (366)
T 1xp8_A 154 DVVVVDSVAALT 165 (366)
T ss_dssp SEEEEECTTTCC
T ss_pred CEEEEeChHHhc
Confidence 899999998775
No 310
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.92 E-value=0.048 Score=52.62 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=21.6
Q ss_pred eEEEecCCCchHHHHHHHHHHHH
Q 003038 659 WLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
.+.+.||+|+|||++++.||..+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999987
No 311
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.92 E-value=0.11 Score=59.67 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=28.5
Q ss_pred cceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccc
Q 003038 656 EETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALS 694 (854)
Q Consensus 656 p~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s 694 (854)
+...++|+||+|+|||++++.||.++-.....+...+..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D 330 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGD 330 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCc
Confidence 345899999999999999999999875433333333333
No 312
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=92.91 E-value=0.2 Score=59.11 Aligned_cols=28 Identities=11% Similarity=0.152 Sum_probs=23.8
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHhhhcC
Q 003038 732 PHRVFLIEDVEQADYCSQKGFKRAIESG 759 (854)
Q Consensus 732 p~~ViliDEieka~~~v~~~Ll~~le~G 759 (854)
+..+|+|||+..++......|++.+..|
T Consensus 262 ~~d~lIIDEAsml~~~~~~~Ll~~l~~~ 289 (608)
T 1w36_D 262 HLDVLVVDEASMIDLPMMSRLIDALPDH 289 (608)
T ss_dssp SCSEEEECSGGGCBHHHHHHHHHTCCTT
T ss_pred CCCEEEEechhhCCHHHHHHHHHhCCCC
Confidence 5679999999999998888888887543
No 313
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.90 E-value=0.073 Score=54.50 Aligned_cols=26 Identities=12% Similarity=0.165 Sum_probs=21.8
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHH
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
+.+-++|+||||+||+|.++-|+++.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34456788999999999999999874
No 314
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.87 E-value=0.05 Score=53.65 Aligned_cols=33 Identities=18% Similarity=0.332 Sum_probs=26.7
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccc
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSS 695 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~ 695 (854)
..++|.|++|+|||++|+.||+.+ | +..++++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l-~----~~~i~~d~ 45 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY-G----FTHLSTGE 45 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH-T----CEEEEHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh-C----CeEEcHHH
Confidence 378999999999999999999987 3 45565543
No 315
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.84 E-value=0.045 Score=59.72 Aligned_cols=32 Identities=16% Similarity=0.263 Sum_probs=25.8
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEc
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIA 692 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id 692 (854)
..+++.||+|+|||+||..||+.+ + ..+|..|
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l-~--~eiIs~D 72 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF-P--LEVINSD 72 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS-C--EEEEECC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC-C--CcEEccc
Confidence 378999999999999999999987 2 2455544
No 316
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.84 E-value=0.071 Score=54.07 Aligned_cols=23 Identities=13% Similarity=0.043 Sum_probs=20.8
Q ss_pred CceeecCCCCCHHHHHHHHHHHH
Q 003038 229 NFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 229 n~vLvGe~GvGKta~v~~la~~i 251 (854)
+++|+||||+||+|.++-||++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999874
No 317
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.83 E-value=0.065 Score=52.78 Aligned_cols=36 Identities=17% Similarity=0.306 Sum_probs=28.4
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
..+++.|++|+|||++++.||+.++| +..+|++.+.
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g----~~~id~d~~~ 46 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDG----FQHLEVGKLV 46 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTT----EEEEEHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCC----CEEeeHHHHH
Confidence 37899999999999999999998543 5556665443
No 318
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.83 E-value=0.063 Score=56.14 Aligned_cols=37 Identities=14% Similarity=0.319 Sum_probs=27.9
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccc
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALS 694 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s 694 (854)
..++|.|++|+|||++|+.|++.+-.....++.++..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D 41 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSD 41 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECch
Confidence 4789999999999999999999863223345545544
No 319
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.82 E-value=0.069 Score=52.63 Aligned_cols=25 Identities=8% Similarity=0.110 Sum_probs=22.6
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHH
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
...++|+|+||+|||++++.|++++
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999875
No 320
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.81 E-value=0.064 Score=51.66 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=21.5
Q ss_pred eEEEecCCCchHHHHHHHHHHHH
Q 003038 659 WLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
.++|.|++|+|||++|+.||+.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999987
No 321
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.80 E-value=0.047 Score=52.77 Aligned_cols=22 Identities=14% Similarity=0.087 Sum_probs=20.1
Q ss_pred CCceeecCCCCCHHHHHHHHHH
Q 003038 228 RNFVVVGECLASIEGVVRGVID 249 (854)
Q Consensus 228 ~n~vLvGe~GvGKta~v~~la~ 249 (854)
..++|+|+||+|||++++.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4578999999999999999997
No 322
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.80 E-value=0.056 Score=52.51 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=21.4
Q ss_pred eEEEecCCCchHHHHHHHHHHHH
Q 003038 659 WLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
.+++.|++|+|||++|+.||+.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 47889999999999999999987
No 323
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.80 E-value=0.08 Score=52.64 Aligned_cols=23 Identities=22% Similarity=0.240 Sum_probs=21.8
Q ss_pred eEEEecCCCchHHHHHHHHHHHH
Q 003038 659 WLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
.++|.|++|+|||++|+.||+.+
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78899999999999999999987
No 324
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.77 E-value=0.047 Score=53.35 Aligned_cols=24 Identities=17% Similarity=0.048 Sum_probs=22.1
Q ss_pred CceeecCCCCCHHHHHHHHHHHHH
Q 003038 229 NFVVVGECLASIEGVVRGVIDKIE 252 (854)
Q Consensus 229 n~vLvGe~GvGKta~v~~la~~i~ 252 (854)
.++|.|+||+|||++++.|++++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 579999999999999999999875
No 325
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.76 E-value=0.064 Score=52.74 Aligned_cols=24 Identities=13% Similarity=0.223 Sum_probs=22.3
Q ss_pred eeEEEecCCCchHHHHHHHHHHHH
Q 003038 658 TWLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
..++|.|++|+|||++|+.||+.+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999999987
No 326
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.74 E-value=0.16 Score=58.62 Aligned_cols=92 Identities=15% Similarity=0.210 Sum_probs=57.0
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccc-cccCcCCCcccccc---ccc-cCCCCCCchHHHHHHHHHcCCC
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALS-SFSSTRADSTEDSR---NKR-SRDEQSCSYIERFAEAVSNNPH 733 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s-~~~~~~~~s~e~~~---~~r-l~~~~g~g~~e~L~eav~~~p~ 733 (854)
.+++.||+|+|||++.++|+..+ ......+.++-. ++... ..+. ..+ .+...+.++.+.+..++|.+|.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i-~~~~giitied~~E~~~~-----~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD 335 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI-PPDAKVVSIEDTREIKLY-----HENWIAEVTRTGMGEGEIDMYDLLRAALRQRPD 335 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS-CTTCCEEEEESSCCCCCC-----CSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC-CCCCCEEEEcCcccccCC-----CCCeEEEEeecccccCCcCHHHHHHHhhccCCC
Confidence 58999999999999999999877 445567777533 23210 0110 011 0111122555567777888885
Q ss_pred EEEEEecCCCCCHHHHHHHHHhhhcCe
Q 003038 734 RVFLIEDVEQADYCSQKGFKRAIESGR 760 (854)
Q Consensus 734 ~ViliDEieka~~~v~~~Ll~~le~G~ 760 (854)
+|++.|+-- .++. .+++++..|.
T Consensus 336 -~iivgEir~--~E~~-~~l~a~~tGh 358 (511)
T 2oap_1 336 -YIIVGEVRG--REAQ-TLFQAMSTGH 358 (511)
T ss_dssp -EEEESCCCS--THHH-HHHHHHHTTC
T ss_pred -eEEeCCcCH--HHHH-HHHHhhcCCC
Confidence 557899863 4554 4567777774
No 327
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.72 E-value=0.067 Score=53.74 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=20.9
Q ss_pred CceeecCCCCCHHHHHHHHHHHH
Q 003038 229 NFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 229 n~vLvGe~GvGKta~v~~la~~i 251 (854)
+++|+|+||+|||++++.|+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999874
No 328
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.72 E-value=0.062 Score=54.50 Aligned_cols=31 Identities=35% Similarity=0.415 Sum_probs=25.8
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccc
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALS 694 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s 694 (854)
.++|.||||+||++.|+.||+.+ .+.+|...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~-----g~~~istG 32 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK-----GFVHISTG 32 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-----CCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----CCeEEcHH
Confidence 47889999999999999999987 46666654
No 329
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.69 E-value=0.12 Score=53.48 Aligned_cols=26 Identities=4% Similarity=-0.005 Sum_probs=22.8
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHH
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
+..+++|.|+||+|||++++.|+++.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 44578999999999999999999874
No 330
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.66 E-value=0.078 Score=54.27 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=26.5
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccc
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALS 694 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s 694 (854)
..++|.||||+||++.|+.||+.+ .+..|...
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~-----g~~hIstG 61 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKF-----HFNHLSSG 61 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHH-----CCEEECHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH-----CCceEcHH
Confidence 477888999999999999999987 46666544
No 331
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=92.66 E-value=0.14 Score=56.26 Aligned_cols=84 Identities=10% Similarity=0.044 Sum_probs=47.3
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccc--cccccC-CCCCCchHH--HHHH-HHHcCC
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDS--RNKRSR-DEQSCSYIE--RFAE-AVSNNP 732 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~--~~~rl~-~~~g~g~~e--~L~e-av~~~p 732 (854)
.++++||+|+|||++|..++..+-......+.++...-.... -.... ...++. ..+. ...+ .+.+ .++...
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~--~a~~lG~~~~~l~i~~~~-~~e~~l~~~~~l~~~~~ 139 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPE--YAKKLGVDTDSLLVSQPD-TGEQALEIADMLVRSGA 139 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH--HHHHTTCCGGGCEEECCS-SHHHHHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHH--HHHHcCCCHHHeEEecCC-CHHHHHHHHHHHHhcCC
Confidence 788999999999999999987665444556666654321000 00000 011111 1111 1222 2233 344556
Q ss_pred CEEEEEecCCCCC
Q 003038 733 HRVFLIEDVEQAD 745 (854)
Q Consensus 733 ~~ViliDEieka~ 745 (854)
..+|+||++.-+-
T Consensus 140 ~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 140 LDIIVIDSVAALV 152 (349)
T ss_dssp CSEEEEECGGGCC
T ss_pred CCEEEEcChHhhc
Confidence 7899999998875
No 332
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=92.65 E-value=0.071 Score=54.84 Aligned_cols=27 Identities=11% Similarity=0.086 Sum_probs=22.6
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHHHc
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKIEK 253 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i~~ 253 (854)
..=.+++|++|+|||+.+-+++.+...
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~ 38 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEY 38 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 345677899999999999999988764
No 333
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.63 E-value=0.37 Score=51.47 Aligned_cols=40 Identities=15% Similarity=0.305 Sum_probs=31.3
Q ss_pred ceeEEEecCCCchHHHHHHHHHHHHhC-CCCceEEEccccc
Q 003038 657 ETWLFFQGVDADAKEKIAKELARLVFG-SHNNFVSIALSSF 696 (854)
Q Consensus 657 ~~~lLf~Gp~GvGKt~lAr~LA~~lfg-~~~~~i~id~s~~ 696 (854)
...++|.||+|+|||+++..||..+-. ....+..+++..|
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 358999999999999999999988753 4446666666544
No 334
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.62 E-value=0.06 Score=52.04 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=25.8
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccc
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSF 696 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~ 696 (854)
.++|.|++|+|||++|+.|++.. ..+..++...+
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~~~----~~~~~i~~d~~ 37 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIAKN----PGFYNINRDDY 37 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS----TTEEEECHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHhhc----CCcEEecHHHH
Confidence 68899999999999999999841 23556655433
No 335
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=92.62 E-value=0.18 Score=51.92 Aligned_cols=38 Identities=13% Similarity=0.060 Sum_probs=26.5
Q ss_pred cHHHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHH
Q 003038 211 RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 211 r~~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
|+.....+-.++. .++.+|+||+|+|||.++-.++...
T Consensus 95 ~~~Q~~ai~~~~~---~~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 95 RDYQEKALERWLV---DKRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CHHHHHHHHHHTT---TSEEEEEESSSTTHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHh---CCCEEEEeCCCCCHHHHHHHHHHHc
Confidence 4444444444443 2459999999999999998887663
No 336
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.62 E-value=0.066 Score=53.61 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=23.0
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHH
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
+...++|+|+||+|||++++.|+...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45678999999999999999999875
No 337
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.61 E-value=0.075 Score=50.97 Aligned_cols=23 Identities=9% Similarity=0.031 Sum_probs=21.1
Q ss_pred CceeecCCCCCHHHHHHHHHHHH
Q 003038 229 NFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 229 n~vLvGe~GvGKta~v~~la~~i 251 (854)
+++|+|+||+|||++++.|+.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999875
No 338
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.52 E-value=0.095 Score=50.74 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=22.0
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHH
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
...++|+|+||+|||++++.|+..+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 3468999999999999999999874
No 339
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.51 E-value=0.49 Score=50.53 Aligned_cols=27 Identities=11% Similarity=0.059 Sum_probs=24.3
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHH
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIE 252 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~ 252 (854)
..+.++|+|++|+|||+++..||..+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999998886
No 340
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.47 E-value=0.23 Score=50.45 Aligned_cols=28 Identities=7% Similarity=-0.110 Sum_probs=23.6
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHc
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEK 253 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~ 253 (854)
....++|+|+||+|||+++..++..+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~ 49 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK 49 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5667899999999999999988776653
No 341
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.46 E-value=0.09 Score=53.82 Aligned_cols=26 Identities=12% Similarity=0.027 Sum_probs=23.1
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHH
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
+..+++|+|+||+|||++++.|+.++
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999999885
No 342
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.45 E-value=0.079 Score=52.66 Aligned_cols=25 Identities=12% Similarity=0.062 Sum_probs=22.1
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHH
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDK 250 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~ 250 (854)
+...++|+|+||+|||++++.|+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999976
No 343
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.44 E-value=0.079 Score=53.90 Aligned_cols=25 Identities=12% Similarity=0.052 Sum_probs=22.3
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHH
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
...++|+|+||+|||++++.|+.++
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999999873
No 344
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.43 E-value=1.4 Score=49.62 Aligned_cols=28 Identities=11% Similarity=-0.057 Sum_probs=24.4
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHc
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEK 253 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~ 253 (854)
..+.++++|.+|||||+++..||..+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~ 126 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLRE 126 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3457888999999999999999998875
No 345
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.41 E-value=0.072 Score=52.01 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=21.6
Q ss_pred eEEEecCCCchHHHHHHHHHHHH
Q 003038 659 WLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
.++|.|++|+|||++|+.||+.+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999999976
No 346
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.39 E-value=0.061 Score=52.56 Aligned_cols=25 Identities=8% Similarity=0.081 Sum_probs=22.3
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHH
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
...++|+|+||+|||++++.|+++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999874
No 347
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=92.39 E-value=0.11 Score=52.28 Aligned_cols=35 Identities=14% Similarity=0.058 Sum_probs=28.1
Q ss_pred ceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEE
Q 003038 657 ETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSI 691 (854)
Q Consensus 657 ~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~i 691 (854)
.+.+++++++|.|||+.|-.+|--..|...++.-+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~v 62 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVV 62 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 46889999999999999999997666766555544
No 348
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.38 E-value=0.079 Score=57.13 Aligned_cols=32 Identities=25% Similarity=0.447 Sum_probs=25.8
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEc
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIA 692 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id 692 (854)
..+++.||+|+|||+||..||+.+ + ..+|+.|
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~-~--~~iis~D 42 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKIL-P--VELISVD 42 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS-C--EEEEECC
T ss_pred cEEEEECCCccCHHHHHHHHHHhC-C--CcEEecc
Confidence 468899999999999999999986 2 3455554
No 349
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=92.37 E-value=0.26 Score=53.20 Aligned_cols=96 Identities=7% Similarity=-0.004 Sum_probs=53.4
Q ss_pred HHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCccc-CCceEEEcccc----cccc-----c------
Q 003038 213 EDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEAL-RDVKCLPLSIS----SFRH-----M------ 276 (854)
Q Consensus 213 ~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L-~~~~~~~l~~~----~l~~-----~------ 276 (854)
.++..++.= .=.....++|+|+||+|||+++..+|..+....--..+ ..+-+++.... .+.. +
T Consensus 94 ~~LD~~L~G-Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~ 172 (324)
T 2z43_A 94 QALDGLLAG-GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNV 172 (324)
T ss_dssp HHHHHHTTT-SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHH
T ss_pred hhHHHhcCC-CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHH
Confidence 555555420 01256789999999999999999999775432000000 12333333322 0100 0
Q ss_pred ----------chHHHHHHHHHHHHHHHhhhCCCeEEEeCccccc
Q 003038 277 ----------NRVEVEQRVEEIKNLVRSCLGRGIVLNLGDLEWA 310 (854)
Q Consensus 277 ----------~rge~E~rl~~l~~~~~~~~~~~~ILfidel~~l 310 (854)
...+..+.+..+...+++. .++-+|+||.+..+
T Consensus 173 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~lvVIDsl~~l 215 (324)
T 2z43_A 173 MNNIYYIRAINTDHQIAIVDDLQELVSKD-PSIKLIVVDSVTSH 215 (324)
T ss_dssp HHTEEEEECCSHHHHHHHHHHHHHHHHHC-TTEEEEEETTTTHH
T ss_pred hccEEEEeCCCHHHHHHHHHHHHHHHHhc-cCCCEEEEeCcHHH
Confidence 1122333455566666652 35789999999888
No 350
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.29 E-value=0.075 Score=53.81 Aligned_cols=26 Identities=8% Similarity=-0.006 Sum_probs=23.0
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHH
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
+..+++|+|+||+|||++++.||.++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999999875
No 351
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.29 E-value=0.066 Score=53.56 Aligned_cols=24 Identities=17% Similarity=0.098 Sum_probs=22.0
Q ss_pred eeEEEecCCCchHHHHHHHHHHHH
Q 003038 658 TWLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
..++|.||+|+|||++++.|++.+
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 378999999999999999999976
No 352
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.29 E-value=0.09 Score=50.40 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=21.3
Q ss_pred eEEEecCCCchHHHHHHHHHHHH
Q 003038 659 WLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
.++|.|++|+|||++|+.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 353
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.28 E-value=0.082 Score=51.50 Aligned_cols=34 Identities=12% Similarity=0.147 Sum_probs=27.7
Q ss_pred HHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHH
Q 003038 215 VMYVIENLMSKRKRNFVVVGECLASIEGVVRGVID 249 (854)
Q Consensus 215 i~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~ 249 (854)
+.++.+ |-++++-+++++|++|||||+++..+..
T Consensus 5 ~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 5 FTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp HHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred HHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 456666 5566788999999999999999988763
No 354
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.25 E-value=0.21 Score=50.82 Aligned_cols=75 Identities=15% Similarity=0.154 Sum_probs=0.0
Q ss_pred cCcCCceeecCCCCCHHHHHHHHH--HHHHcCCCCcccCCceEEEccccc------------------------------
Q 003038 225 KRKRNFVVVGECLASIEGVVRGVI--DKIEKGDVPEALRDVKCLPLSISS------------------------------ 272 (854)
Q Consensus 225 ~~k~n~vLvGe~GvGKta~v~~la--~~i~~~~vp~~L~~~~~~~l~~~~------------------------------ 272 (854)
....-++|+||+|+|||++++.++ ..+..+ .+..++..+...
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 101 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG------EPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVS 101 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC------CCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC---
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC------CeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccc
Q ss_pred ----------ccccchHHHHHHHHHHHHHHHhhhCCCeEEEeCcc
Q 003038 273 ----------FRHMNRVEVEQRVEEIKNLVRSCLGRGIVLNLGDL 307 (854)
Q Consensus 273 ----------l~~~~rge~E~rl~~l~~~~~~~~~~~~ILfidel 307 (854)
.......+.++.+..+...+... ++-+|+|||+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~p~~lilDep 144 (251)
T 2ehv_A 102 SVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAI--NAKRLVIDSI 144 (251)
T ss_dssp ----------------CCHHHHHHHHHHHHHHT--TCSEEEEECH
T ss_pred cccccccccceeccCcccHHHHHHHHHHHHHhh--CCCEEEEccH
No 355
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=92.22 E-value=0.17 Score=55.84 Aligned_cols=91 Identities=14% Similarity=0.033 Sum_probs=51.7
Q ss_pred HHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccccc--ccc---c--------c-h
Q 003038 213 EDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISS--FRH---M--------N-R 278 (854)
Q Consensus 213 ~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~--l~~---~--------~-r 278 (854)
.++..++.+=-=.....++|.|+||+|||+++..+|..+.... ..+-+++++.+. +.+ + + -
T Consensus 60 ~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g-----~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~ 134 (366)
T 1xp8_A 60 LSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAG-----GTCAFIDAEHALDPVYARALGVNTDELLVSQP 134 (366)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-----CCEEEEESSCCCCHHHHHHTTCCGGGCEEECC
T ss_pred HHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCC-----CeEEEEECCCChhHHHHHHcCCCHHHceeecC
Confidence 5565555310012566789999999999999999998876421 134445544321 000 0 0 0
Q ss_pred HHHHHHHHHHHHHHHhhhCCCeEEEeCccccc
Q 003038 279 VEVEQRVEEIKNLVRSCLGRGIVLNLGDLEWA 310 (854)
Q Consensus 279 ge~E~rl~~l~~~~~~~~~~~~ILfidel~~l 310 (854)
..+|+-+..+...+++ .+.-+|+||.+..+
T Consensus 135 ~~~e~~l~~l~~l~~~--~~~~lVVIDsl~~l 164 (366)
T 1xp8_A 135 DNGEQALEIMELLVRS--GAIDVVVVDSVAAL 164 (366)
T ss_dssp SSHHHHHHHHHHHHTT--TCCSEEEEECTTTC
T ss_pred CcHHHHHHHHHHHHhc--CCCCEEEEeChHHh
Confidence 1233333333333333 35678999999988
No 356
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=92.20 E-value=0.28 Score=53.98 Aligned_cols=42 Identities=10% Similarity=-0.035 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHc
Q 003038 212 NEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEK 253 (854)
Q Consensus 212 ~~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~ 253 (854)
-.++..++.+=-=...+.++|.|+||+|||+++..+|..+..
T Consensus 48 ~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~ 89 (356)
T 1u94_A 48 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR 89 (356)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 355666543100135678999999999999999999987765
No 357
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=92.19 E-value=0.25 Score=54.29 Aligned_cols=86 Identities=7% Similarity=0.010 Sum_probs=48.7
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccc--cccccC--CCCCC-chHHHHHHHHHcCCC
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDS--RNKRSR--DEQSC-SYIERFAEAVSNNPH 733 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~--~~~rl~--~~~g~-g~~e~L~eav~~~p~ 733 (854)
.+++.|++|+|||.+|..+|..+-......+.++...-..... . ... ...++. .+... ...+.+...++....
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~-a-~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~ 142 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-A-RKLGVDIDNLLCSQPDTGEQALEICDALARSGAV 142 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHH-H-HHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHH-H-HHcCCChhheeeeCCCCHHHHHHHHHHHHhccCC
Confidence 7889999999999999999987654445677777643210000 0 000 011111 11110 111123334456778
Q ss_pred EEEEEecCCCCCH
Q 003038 734 RVFLIEDVEQADY 746 (854)
Q Consensus 734 ~ViliDEieka~~ 746 (854)
.+|+||.+-.+.+
T Consensus 143 ~lVVIDsl~~l~~ 155 (356)
T 1u94_A 143 DVIVVDSVAALTP 155 (356)
T ss_dssp SEEEEECGGGCCC
T ss_pred CEEEEcCHHHhcc
Confidence 9999999987763
No 358
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.18 E-value=0.094 Score=53.05 Aligned_cols=25 Identities=12% Similarity=0.134 Sum_probs=22.4
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHH
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
..+++|+|+||+|||++++.|+.++
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999999875
No 359
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.17 E-value=0.066 Score=53.94 Aligned_cols=24 Identities=8% Similarity=0.128 Sum_probs=21.8
Q ss_pred eeEEEecCCCchHHHHHHHHHHHH
Q 003038 658 TWLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
..+.|.||+|+|||++++.|+..+
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 378899999999999999999875
No 360
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.14 E-value=0.059 Score=52.88 Aligned_cols=25 Identities=4% Similarity=0.045 Sum_probs=21.8
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHH
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDK 250 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~ 250 (854)
....++|+|+||+|||++++.|+..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4557899999999999999999865
No 361
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=92.11 E-value=0.23 Score=53.50 Aligned_cols=27 Identities=11% Similarity=-0.044 Sum_probs=23.3
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHHHc
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKIEK 253 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i~~ 253 (854)
.+-++++|++|+|||+++.-||..+..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 445789999999999999999988764
No 362
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.10 E-value=0.082 Score=52.17 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=21.4
Q ss_pred eEEEecCCCchHHHHHHHHHHHH
Q 003038 659 WLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
.+.|.|++|+|||++++.||+.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 47899999999999999999987
No 363
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.08 E-value=0.2 Score=54.27 Aligned_cols=62 Identities=19% Similarity=0.128 Sum_probs=40.7
Q ss_pred cccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHHHhC--CCCceEEEccccc
Q 003038 621 PWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARLVFG--SHNNFVSIALSSF 696 (854)
Q Consensus 621 ~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg--~~~~~i~id~s~~ 696 (854)
+|...+...+...+..... .+....+.+.||+|+|||++++.|+..+-. .......+.+..|
T Consensus 70 ~~~~~~l~~~~~~~l~~~~--------------~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPE--------------PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCC--------------CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred hcchHHHHHHHHHHhccCC--------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 5666666776666665321 123358899999999999999999998731 1223444444443
No 364
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.08 E-value=0.057 Score=52.56 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=18.0
Q ss_pred eeEEEecCCCchHHHHHHHHHHHH
Q 003038 658 TWLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
..++|.|++|+|||++|+.||+.+
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 378899999999999999999876
No 365
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.08 E-value=0.091 Score=52.17 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=21.8
Q ss_pred eEEEecCCCchHHHHHHHHHHHH
Q 003038 659 WLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
.++|.|++|+|||++|+.|++.+
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999987
No 366
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=92.08 E-value=0.68 Score=54.53 Aligned_cols=28 Identities=14% Similarity=0.125 Sum_probs=24.1
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHc
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEK 253 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~ 253 (854)
+++.+++.|+||+|||+++..+...+.+
T Consensus 163 ~~~~~vi~G~pGTGKTt~l~~ll~~l~~ 190 (608)
T 1w36_D 163 TRRISVISGGPGTGKTTTVAKLLAALIQ 190 (608)
T ss_dssp TBSEEEEECCTTSTHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999988877654
No 367
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.04 E-value=0.086 Score=57.22 Aligned_cols=31 Identities=26% Similarity=0.391 Sum_probs=25.2
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCCCceEEEc
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSHNNFVSIA 692 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id 692 (854)
.+++.||+|+|||++|+.||+.+ + ..++..|
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l-~--~~iis~D 37 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADAL-P--CELISVD 37 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS-C--EEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-C--CcEEecc
Confidence 68899999999999999999987 2 2445444
No 368
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.03 E-value=0.089 Score=52.50 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=22.3
Q ss_pred eeEEEecCCCchHHHHHHHHHHHH
Q 003038 658 TWLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
..++|.|++|+|||++|+.|++.+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999987
No 369
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=92.02 E-value=0.48 Score=50.92 Aligned_cols=42 Identities=19% Similarity=0.296 Sum_probs=31.8
Q ss_pred CcceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccc
Q 003038 655 KEETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSF 696 (854)
Q Consensus 655 kp~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~ 696 (854)
++..+++|.||+|+|||+++..||..+-.....+.-+++..|
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~ 143 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF 143 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence 344689999999999999999999887544445555665544
No 370
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.99 E-value=0.11 Score=53.85 Aligned_cols=32 Identities=13% Similarity=0.210 Sum_probs=25.9
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccc
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALS 694 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s 694 (854)
..++|.||+|+|||++|+.|++.+ .+..++.+
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~-----g~~~is~~ 61 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSH-----CYCHLSTG 61 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH-----CCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh-----CCeEEecH
Confidence 478999999999999999999877 24555544
No 371
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.97 E-value=0.11 Score=50.83 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=25.3
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCCCceEEEc
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSHNNFVSIA 692 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id 692 (854)
.+.|.|++|+|||++|+.|++.+-...-.++..|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4689999999999999999998732123444443
No 372
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.95 E-value=0.1 Score=52.07 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=22.3
Q ss_pred eeEEEecCCCchHHHHHHHHHHHH
Q 003038 658 TWLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
..++|.|++|+|||++|+.|++.+
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999976
No 373
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.91 E-value=0.11 Score=52.25 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=28.5
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHh-CCCCceEEEccc
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVF-GSHNNFVSIALS 694 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lf-g~~~~~i~id~s 694 (854)
..++|.|++|+|||++++.|++.+. .....++.+|..
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence 4788999999999999999999885 222346677643
No 374
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=91.90 E-value=0.077 Score=52.06 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=21.4
Q ss_pred eEEEecCCCchHHHHHHHHHHHH
Q 003038 659 WLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
.+.|.||+|+|||++++.|+..+
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 78999999999999999999875
No 375
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=91.87 E-value=0.27 Score=54.08 Aligned_cols=43 Identities=12% Similarity=-0.013 Sum_probs=31.2
Q ss_pred cHHHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHc
Q 003038 211 RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEK 253 (854)
Q Consensus 211 r~~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~ 253 (854)
.-.++.+++.+=-=....-++|+||||+|||+++..++..+..
T Consensus 45 G~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~ 87 (356)
T 3hr8_A 45 GSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQK 87 (356)
T ss_dssp SCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4467777664100124667899999999999999999987654
No 376
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.85 E-value=0.12 Score=52.90 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=21.5
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHH
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDK 250 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~ 250 (854)
...+++|+|++|||||+++..+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 4568999999999999999987753
No 377
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.83 E-value=0.084 Score=52.67 Aligned_cols=28 Identities=18% Similarity=0.134 Sum_probs=24.3
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHc
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEK 253 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~ 253 (854)
+...++|+|+||+|||++++.|++++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4567899999999999999999998743
No 378
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=91.81 E-value=0.22 Score=53.20 Aligned_cols=26 Identities=15% Similarity=0.368 Sum_probs=23.2
Q ss_pred ceeEEEecCCCchHHHHHHHHHHHHh
Q 003038 657 ETWLFFQGVDADAKEKIAKELARLVF 682 (854)
Q Consensus 657 ~~~lLf~Gp~GvGKt~lAr~LA~~lf 682 (854)
...+.+.||+|+|||++|+.|++.+-
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 35788999999999999999999884
No 379
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.77 E-value=0.083 Score=53.47 Aligned_cols=23 Identities=13% Similarity=0.133 Sum_probs=21.8
Q ss_pred eEEEecCCCchHHHHHHHHHHHH
Q 003038 659 WLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
.++|.||+|+|||++|+.||+.+
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999999987
No 380
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.75 E-value=0.084 Score=52.10 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=21.3
Q ss_pred CceeecCCCCCHHHHHHHHHHHH
Q 003038 229 NFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 229 n~vLvGe~GvGKta~v~~la~~i 251 (854)
.++|+|+||+|||++++.|++++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 47899999999999999999876
No 381
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.74 E-value=0.12 Score=50.40 Aligned_cols=34 Identities=3% Similarity=-0.076 Sum_probs=26.8
Q ss_pred CceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcc
Q 003038 229 NFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLS 269 (854)
Q Consensus 229 n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~ 269 (854)
.++|.|.||+|||++++.|+.++.. .|..++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~-------~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ-------KGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH-------TTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-------CCCeEEEEe
Confidence 4789999999999999999988643 245566654
No 382
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=91.72 E-value=0.89 Score=52.94 Aligned_cols=42 Identities=12% Similarity=0.128 Sum_probs=34.0
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccc
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSIS 271 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~ 271 (854)
-.+.++.|.+|+|||.+++.++..+....-|+ .++|+-+|..
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~---ev~lilIDpK 255 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPS---EARLIMIDPK 255 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTT---TEEEEEECSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCc---ceEEEEeCCC
Confidence 47999999999999999999988887665563 4577777754
No 383
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.67 E-value=0.088 Score=52.30 Aligned_cols=26 Identities=15% Similarity=-0.100 Sum_probs=23.0
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHHH
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKIE 252 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i~ 252 (854)
...++|.|+||+|||++++.|++++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 35689999999999999999999863
No 384
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.62 E-value=0.13 Score=51.70 Aligned_cols=38 Identities=13% Similarity=0.059 Sum_probs=29.0
Q ss_pred HHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHH
Q 003038 214 DVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 214 ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
.+.++-..+.+.+..+++++|.+|||||+++..|+...
T Consensus 17 ~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 17 LAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34444444445567789999999999999999998775
No 385
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.58 E-value=0.29 Score=63.75 Aligned_cols=78 Identities=12% Similarity=0.089 Sum_probs=51.2
Q ss_pred cCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccccccccc---------------chHHHHHHHHHHH
Q 003038 225 KRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHM---------------NRVEVEQRVEEIK 289 (854)
Q Consensus 225 ~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~---------------~rge~E~rl~~l~ 289 (854)
....+++|+|+||+|||.++..++..... .|..++-++....... ++.+..+.+.+++
T Consensus 32 ~~G~i~lI~G~pGsGKT~LAlqla~~~~~-------~G~~vlYI~te~~~~~l~~~~lg~dl~~i~i~~p~t~e~l~~ll 104 (1706)
T 3cmw_A 32 PMGRIVEIYGPESSGKTTLTLQVIAAAQR-------EGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEIC 104 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHH-------TTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh-------CCCceEEEEecCccHHHHHHhhccCccceeeeccCcHHHHHHHH
Confidence 46789999999999999999998876443 1334444443322111 0112244566777
Q ss_pred HHHHhhhCCCeEEEeCccccc
Q 003038 290 NLVRSCLGRGIVLNLGDLEWA 310 (854)
Q Consensus 290 ~~~~~~~~~~~ILfidel~~l 310 (854)
+.+.+. +.+.+|+||+|-.+
T Consensus 105 ~~L~~~-~~~~LVVIDSLt~L 124 (1706)
T 3cmw_A 105 DALARS-GAVDVIVVDSVAAL 124 (1706)
T ss_dssp HHHHHH-TCCSEEEESCSTTC
T ss_pred HHHHhc-cCCCEEEEcchhhh
Confidence 776554 45789999999888
No 386
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=91.56 E-value=0.22 Score=54.70 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=22.0
Q ss_pred eeEEEecCCCchHHHHHHHHHHHH
Q 003038 658 TWLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
..++|.|++|+|||+++++||+.+
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh
Confidence 468899999999999999999877
No 387
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.55 E-value=0.098 Score=51.84 Aligned_cols=24 Identities=8% Similarity=0.281 Sum_probs=21.8
Q ss_pred eeEEEecCCCchHHHHHHHHHHHH
Q 003038 658 TWLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
..+.|.||+|+|||++++.|+..+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 378899999999999999999974
No 388
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.50 E-value=0.098 Score=52.50 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=21.0
Q ss_pred eEEEecCCCchHHHHHHHHHHHH
Q 003038 659 WLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
.++|.||+|+|||++|+.||+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999877
No 389
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=91.50 E-value=0.33 Score=48.79 Aligned_cols=29 Identities=7% Similarity=-0.019 Sum_probs=25.5
Q ss_pred cCcCCceeecCCCCCHHHHHHHHHHHHHc
Q 003038 225 KRKRNFVVVGECLASIEGVVRGVIDKIEK 253 (854)
Q Consensus 225 ~~k~n~vLvGe~GvGKta~v~~la~~i~~ 253 (854)
..+-++++++.+|.|||+++-|+|.|...
T Consensus 26 ~~~g~i~v~tG~GkGKTTaA~GlalRA~g 54 (196)
T 1g5t_A 26 EERGIIIVFTGNGKGKTTAAFGTAARAVG 54 (196)
T ss_dssp -CCCCEEEEESSSSCHHHHHHHHHHHHHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 36789999999999999999999998764
No 390
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.49 E-value=0.11 Score=53.04 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=22.3
Q ss_pred eeEEEecCCCchHHHHHHHHHHHH
Q 003038 658 TWLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
..++|.|++|+|||++|+.||+.+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999999987
No 391
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.47 E-value=0.19 Score=48.97 Aligned_cols=26 Identities=8% Similarity=0.213 Sum_probs=22.3
Q ss_pred cCcCCceeecCCCCCHHHHHHHHHHH
Q 003038 225 KRKRNFVVVGECLASIEGVVRGVIDK 250 (854)
Q Consensus 225 ~~k~n~vLvGe~GvGKta~v~~la~~ 250 (854)
....+++|+|++|||||+++..+...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999988754
No 392
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.45 E-value=0.13 Score=50.13 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=22.2
Q ss_pred eeEEEecCCCchHHHHHHHHHHHH
Q 003038 658 TWLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
..++|.|++|+|||++|+.|++.+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999999987
No 393
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.38 E-value=0.29 Score=53.85 Aligned_cols=93 Identities=12% Similarity=0.138 Sum_probs=54.9
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccc-cccCcCCCccccccccccCC--C------CCCchHHHHHHHH
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALS-SFSSTRADSTEDSRNKRSRD--E------QSCSYIERFAEAV 728 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s-~~~~~~~~s~e~~~~~rl~~--~------~g~g~~e~L~eav 728 (854)
..+++.||+|+|||++.++|+..+ ......|.++.. ++... . ....+ .+.. . .+....+.|..++
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~-~~~~g~I~ie~~~e~~~~---~-~~~~v-~~v~~q~~~~~~~~~~t~~~~i~~~l 249 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEI-PFDQRLITIEDVPELFLP---D-HPNHV-HLFYPSEAKEEENAPVTAATLLRSCL 249 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTS-CTTSCEEEEESSSCCCCT---T-CSSEE-EEECC----------CCHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC-CCCceEEEECCccccCcc---c-cCCEE-EEeecCccccccccccCHHHHHHHHH
Confidence 478999999999999999999876 334566777632 22200 0 00111 0111 0 1112334566666
Q ss_pred HcCCCEEEEEecCCCCCHHHHHHHHHhhhcCe
Q 003038 729 SNNPHRVFLIEDVEQADYCSQKGFKRAIESGR 760 (854)
Q Consensus 729 ~~~p~~ViliDEieka~~~v~~~Ll~~le~G~ 760 (854)
+..| .+++++|+.. .++.. +++.+..|.
T Consensus 250 ~~~p-d~~l~~e~r~--~~~~~-~l~~l~~g~ 277 (361)
T 2gza_A 250 RMKP-TRILLAELRG--GEAYD-FINVAASGH 277 (361)
T ss_dssp TSCC-SEEEESCCCS--THHHH-HHHHHHTTC
T ss_pred hcCC-CEEEEcCchH--HHHHH-HHHHHhcCC
Confidence 6666 4778899874 34555 567777774
No 394
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=91.36 E-value=1.3 Score=43.40 Aligned_cols=26 Identities=0% Similarity=0.020 Sum_probs=19.4
Q ss_pred cCCceeecCCCCCHHHHH-HHHHHHHH
Q 003038 227 KRNFVVVGECLASIEGVV-RGVIDKIE 252 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v-~~la~~i~ 252 (854)
.+|+++.+|+|+|||.+. -.+...+.
T Consensus 38 ~~~~li~~~TGsGKT~~~~~~~~~~l~ 64 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAFALPIAERLA 64 (207)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred CCCEEEECCCCChHHHHHHHHHHHHHh
Confidence 478999999999999764 34445543
No 395
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.35 E-value=0.11 Score=51.89 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=21.7
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHH
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
..+-++|+||+|+|||++++.|+...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34678999999999999999998765
No 396
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.32 E-value=0.094 Score=53.33 Aligned_cols=24 Identities=8% Similarity=0.170 Sum_probs=22.0
Q ss_pred eeEEEecCCCchHHHHHHHHHHHH
Q 003038 658 TWLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
..++|.|++|+|||++|+.||+.+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999976
No 397
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.29 E-value=0.11 Score=51.91 Aligned_cols=28 Identities=7% Similarity=0.083 Sum_probs=24.0
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHc
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEK 253 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~ 253 (854)
+...++|.|+||+|||++++.|++++..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3456899999999999999999988643
No 398
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.28 E-value=0.13 Score=51.24 Aligned_cols=38 Identities=24% Similarity=0.277 Sum_probs=28.6
Q ss_pred cceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 656 EETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 656 p~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
+...+.+.|++|+|||++++.|++.+- .+..+++..+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~~ 57 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQDDFF 57 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGGGGB
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCCccc
Confidence 334788999999999999999998651 35566665543
No 399
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=91.27 E-value=0.25 Score=49.69 Aligned_cols=89 Identities=10% Similarity=0.074 Sum_probs=49.8
Q ss_pred eEEEecCCCchHH-HHHHHHHHHHhCCCCceEEEccc---cccCcCCCcccccccccc---CCCCCCchHHHHHHHHHcC
Q 003038 659 WLFFQGVDADAKE-KIAKELARLVFGSHNNFVSIALS---SFSSTRADSTEDSRNKRS---RDEQSCSYIERFAEAVSNN 731 (854)
Q Consensus 659 ~lLf~Gp~GvGKt-~lAr~LA~~lfg~~~~~i~id~s---~~~~~~~~s~e~~~~~rl---~~~~g~g~~e~L~eav~~~ 731 (854)
-++++||.|.||| +|.+++.+..... .+.+.+... .|. .. -+++. +......-.+.+.+.. .
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~~-~kvl~~kp~~D~R~~-------~~-i~S~~g~~~~A~~~~~~~d~~~~~--~ 90 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIAQ-YKCLVIKYAKDTRYS-------SS-FCTHDRNTMEALPACLLRDVAQEA--L 90 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTT-CCEEEEEETTCCCGG-------GS-CCHHHHHHSEEEEESSGGGGHHHH--H
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcC-CeEEEEccccCccch-------hh-hhhccCCcccceecCCHHHHHHhc--c
Confidence 5677999999999 9999999888754 445555422 121 00 01111 0000000111233333 3
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHhhhcC
Q 003038 732 PHRVFLIEDVEQADYCSQKGFKRAIESG 759 (854)
Q Consensus 732 p~~ViliDEieka~~~v~~~Ll~~le~G 759 (854)
+..||+|||+.-. ++....+..+.+.|
T Consensus 91 ~~DvIlIDEaQFf-k~~ve~~~~L~~~g 117 (195)
T 1w4r_A 91 GVAVIGIDEGQFF-PDIVEFCEAMANAG 117 (195)
T ss_dssp TCSEEEESSGGGC-TTHHHHHHHHHHTT
T ss_pred CCCEEEEEchhhh-HHHHHHHHHHHHCC
Confidence 4789999999999 77555554444544
No 400
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.27 E-value=0.11 Score=52.42 Aligned_cols=24 Identities=13% Similarity=0.117 Sum_probs=22.1
Q ss_pred eeEEEecCCCchHHHHHHHHHHHH
Q 003038 658 TWLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
..++|.|++|+|||++|+.||+.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999999987
No 401
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.21 E-value=0.19 Score=47.30 Aligned_cols=74 Identities=11% Similarity=0.069 Sum_probs=0.0
Q ss_pred CceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccccccccc-chHHHHHHHHHHHHHHHhhhCCCeEEEeC
Q 003038 229 NFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSISSFRHM-NRVEVEQRVEEIKNLVRSCLGRGIVLNLG 305 (854)
Q Consensus 229 n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~l~~~-~rge~E~rl~~l~~~~~~~~~~~~ILfid 305 (854)
+++++|++|||||+++..+...-.....|..-.....+..+--.+.-- .-|. ++...+....-.. ...+|+++|
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~~~~~~~~-~d~~i~v~d 76 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ--DKIRPLWRHYFQN-TQGLIFVVD 76 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCC--GGGHHHHHHHTTT-CSEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCC--hhhHHHHHHHhcc-CCEEEEEEE
No 402
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.15 E-value=0.15 Score=52.41 Aligned_cols=30 Identities=0% Similarity=-0.154 Sum_probs=26.2
Q ss_pred ccCcCCceeecCCCCCHHHHHHHHHHHHHc
Q 003038 224 SKRKRNFVVVGECLASIEGVVRGVIDKIEK 253 (854)
Q Consensus 224 r~~k~n~vLvGe~GvGKta~v~~la~~i~~ 253 (854)
+|.+-|+++.|+||||||+++-.+|..+..
T Consensus 3 ~~g~l~I~~~~kgGvGKTt~a~~la~~l~~ 32 (228)
T 2r8r_A 3 ARGRLKVFLGAAPGVGKTYAMLQAAHAQLR 32 (228)
T ss_dssp CCCCEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 467789999999999999999999888765
No 403
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.13 E-value=0.098 Score=52.58 Aligned_cols=22 Identities=14% Similarity=0.249 Sum_probs=20.4
Q ss_pred EEEecCCCchHHHHHHHHHHHH
Q 003038 660 LFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 660 lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
++|.||+|+|||++|+.||+.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999876
No 404
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=91.13 E-value=0.49 Score=52.48 Aligned_cols=38 Identities=11% Similarity=0.175 Sum_probs=30.9
Q ss_pred HHHHHHhhc-cCcCCceeecCCCCCHHHHHHHHHHHHHc
Q 003038 216 MYVIENLMS-KRKRNFVVVGECLASIEGVVRGVIDKIEK 253 (854)
Q Consensus 216 ~~v~~~L~r-~~k~n~vLvGe~GvGKta~v~~la~~i~~ 253 (854)
-++|+.|.- .+.....|+|++|+|||+++..++..+..
T Consensus 163 iraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~ 201 (427)
T 3l0o_A 163 TRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAE 201 (427)
T ss_dssp HHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred chhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhh
Confidence 477888764 36678899999999999999999987754
No 405
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=91.08 E-value=0.15 Score=55.97 Aligned_cols=28 Identities=11% Similarity=0.137 Sum_probs=23.9
Q ss_pred cCcCCceeecCCCCCHHHHHHHHHHHHH
Q 003038 225 KRKRNFVVVGECLASIEGVVRGVIDKIE 252 (854)
Q Consensus 225 ~~k~n~vLvGe~GvGKta~v~~la~~i~ 252 (854)
....|++|+|+||+|||++++.||..+.
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3456799999999999999999998753
No 406
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.08 E-value=0.16 Score=50.57 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=21.1
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHH
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
+.-+++|+|++|||||+++..+...-
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 55689999999999999999887643
No 407
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.07 E-value=0.11 Score=51.52 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=22.8
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHH
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
+...++|.|++|+|||++++.|++++
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999999874
No 408
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=91.06 E-value=0.25 Score=58.24 Aligned_cols=38 Identities=16% Similarity=0.125 Sum_probs=29.5
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEccc
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSI 270 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~ 270 (854)
+...++|+|.||+|||++++.|++++.. +|..++.+|.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~-------~G~~~v~lDg 88 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVC-------HGIPCYTLDG 88 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH-------TTCCEEEESH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHh-------cCCeEEEech
Confidence 3456899999999999999999998754 2455666653
No 409
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.03 E-value=0.12 Score=50.78 Aligned_cols=24 Identities=25% Similarity=0.474 Sum_probs=21.6
Q ss_pred eEEEecCCCchHHHHHHHHHHHHh
Q 003038 659 WLFFQGVDADAKEKIAKELARLVF 682 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lf 682 (854)
.+.|.|++|+|||++++.|++.+-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999873
No 410
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.01 E-value=0.099 Score=51.82 Aligned_cols=25 Identities=12% Similarity=0.101 Sum_probs=22.4
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHh
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVF 682 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lf 682 (854)
..+.|.||+|+|||++++.|+..+.
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 3788999999999999999999763
No 411
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=91.00 E-value=0.12 Score=50.85 Aligned_cols=34 Identities=21% Similarity=0.109 Sum_probs=25.3
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccc
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSF 696 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~ 696 (854)
.+.|.||+|+|||++++.|+...- ..+.++...+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~----g~~~i~~d~~ 37 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLD----NSAYIEGDII 37 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS----SEEEEEHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccC----CeEEEcccch
Confidence 678999999999999999998431 2255554443
No 412
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.91 E-value=0.16 Score=55.40 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=26.6
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccc
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSF 696 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~ 696 (854)
.+++.||+|+|||++|+.||+.+ + ...|++..|
T Consensus 9 lI~I~GptgSGKTtla~~La~~l-~----~~iis~Ds~ 41 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF-N----GEIISGDSM 41 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT-T----EEEEECCSS
T ss_pred eEEEECCCcCcHHHHHHHHHHHc-C----Cceeccccc
Confidence 68899999999999999999987 2 344555555
No 413
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.90 E-value=0.13 Score=50.08 Aligned_cols=25 Identities=4% Similarity=0.110 Sum_probs=21.2
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHH
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDK 250 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~ 250 (854)
...+++++|++|||||+++..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4457899999999999999988753
No 414
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=90.85 E-value=0.12 Score=51.57 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=21.4
Q ss_pred eEEEecCCCchHHHHHHHHHHHH
Q 003038 659 WLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
.+.|+||+|+|||++.+.|+..+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 67899999999999999999876
No 415
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=90.83 E-value=0.075 Score=51.68 Aligned_cols=25 Identities=4% Similarity=0.015 Sum_probs=18.1
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHH
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
...++|+|.||+|||++++.|+.++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3568999999999999999999874
No 416
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=90.81 E-value=0.14 Score=57.06 Aligned_cols=31 Identities=13% Similarity=0.220 Sum_probs=25.3
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCCCceEEEc
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSHNNFVSIA 692 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id 692 (854)
.+++.||+|+|||+||..||+.+- ..+|+.|
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~---~~iis~D 34 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFN---GEVINSD 34 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHT---EEEEECC
T ss_pred EEEEECcchhhHHHHHHHHHHHCC---CeEeecC
Confidence 688999999999999999999873 2455554
No 417
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=90.81 E-value=0.14 Score=52.78 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=22.1
Q ss_pred eeEEEecCCCchHHHHHHHHHHHH
Q 003038 658 TWLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
..+.+.||+|+|||++++.|++.+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999876
No 418
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.73 E-value=0.11 Score=56.00 Aligned_cols=31 Identities=23% Similarity=0.187 Sum_probs=24.8
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCCCceEEEc
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSHNNFVSIA 692 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id 692 (854)
.+++.||+|+|||++|..||+.+ + ..+|+.|
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~-~--~~iis~D 35 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRL-N--GEVISGD 35 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT-T--EEEEECC
T ss_pred EEEEECCCcCCHHHHHHHHHHhC-c--cceeecC
Confidence 67899999999999999999976 2 2445444
No 419
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.72 E-value=0.13 Score=52.41 Aligned_cols=23 Identities=9% Similarity=0.076 Sum_probs=21.3
Q ss_pred eEEEecCCCchHHHHHHHHHHHH
Q 003038 659 WLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
.++|.|++|+|||++|+.||+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 420
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.69 E-value=0.13 Score=51.70 Aligned_cols=23 Identities=13% Similarity=0.130 Sum_probs=21.2
Q ss_pred eEEEecCCCchHHHHHHHHHHHH
Q 003038 659 WLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
.++|.|++|+|||++|+.||+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999999999999977
No 421
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=90.69 E-value=0.13 Score=50.72 Aligned_cols=23 Identities=13% Similarity=0.423 Sum_probs=20.8
Q ss_pred CceeecCCCCCHHHHHHHHHHHH
Q 003038 229 NFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 229 n~vLvGe~GvGKta~v~~la~~i 251 (854)
++.|+||+|+|||++++.++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999775
No 422
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.67 E-value=0.14 Score=53.47 Aligned_cols=25 Identities=16% Similarity=0.127 Sum_probs=23.3
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHH
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
..+++|+|++|+|||++++.||.++
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 6789999999999999999999875
No 423
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.65 E-value=0.11 Score=52.18 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=21.1
Q ss_pred CceeecCCCCCHHHHHHHHHHHH
Q 003038 229 NFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 229 n~vLvGe~GvGKta~v~~la~~i 251 (854)
+++|.|+||+|||++++.|+.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999999875
No 424
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.65 E-value=0.088 Score=50.77 Aligned_cols=33 Identities=9% Similarity=0.147 Sum_probs=24.4
Q ss_pred HHHHHHhhc-cCcCCceeecCCCCCHHHHHHHHH
Q 003038 216 MYVIENLMS-KRKRNFVVVGECLASIEGVVRGVI 248 (854)
Q Consensus 216 ~~v~~~L~r-~~k~n~vLvGe~GvGKta~v~~la 248 (854)
.++++-+.. +++-+++++|++|||||+++..+.
T Consensus 6 ~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 6 SSMFDKLWGSNKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp HHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTC
T ss_pred HHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHh
Confidence 344443333 567789999999999999997654
No 425
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=90.62 E-value=0.49 Score=53.47 Aligned_cols=27 Identities=15% Similarity=0.085 Sum_probs=23.7
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHHHc
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKIEK 253 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i~~ 253 (854)
.+-++++|++|||||+++..||..+.+
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 445789999999999999999988865
No 426
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.62 E-value=0.15 Score=49.95 Aligned_cols=24 Identities=13% Similarity=0.032 Sum_probs=21.9
Q ss_pred ceeecCCCCCHHHHHHHHHHHHHc
Q 003038 230 FVVVGECLASIEGVVRGVIDKIEK 253 (854)
Q Consensus 230 ~vLvGe~GvGKta~v~~la~~i~~ 253 (854)
++|.|++|+||||+++.|++++..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999998754
No 427
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=90.53 E-value=0.22 Score=49.61 Aligned_cols=42 Identities=2% Similarity=0.115 Sum_probs=31.2
Q ss_pred cHHHHHHHHHHhhcc---CcCCceeecCCCCCHHHHHHHHHHHHH
Q 003038 211 RNEDVMYVIENLMSK---RKRNFVVVGECLASIEGVVRGVIDKIE 252 (854)
Q Consensus 211 r~~ei~~v~~~L~r~---~k~n~vLvGe~GvGKta~v~~la~~i~ 252 (854)
|++-+..+++-+..+ ...-+.|+|++|+|||++++.|+..+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 556677777665543 223478899999999999999998764
No 428
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=90.53 E-value=0.18 Score=50.64 Aligned_cols=28 Identities=14% Similarity=0.190 Sum_probs=23.9
Q ss_pred ccCcCCceeecCCCCCHHHHHHHHHHHH
Q 003038 224 SKRKRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 224 r~~k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
.++...++|+|.+|||||+++..++...
T Consensus 35 ~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 35 KHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3456789999999999999999998764
No 429
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.47 E-value=0.1 Score=52.80 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=24.6
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCCCceEEEc
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSHNNFVSIA 692 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id 692 (854)
.++|.||+|+|||++|.+|++..+ .+|.-|
T Consensus 36 ~ilI~GpsGsGKStLA~~La~~g~----~iIsdD 65 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQRGH----RLIADD 65 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHTTTC----EEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC----eEEecc
Confidence 589999999999999999998752 455544
No 430
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=90.40 E-value=0.71 Score=51.92 Aligned_cols=42 Identities=19% Similarity=0.251 Sum_probs=33.5
Q ss_pred cceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 656 EETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 656 p~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
+..+++|.|+.|+|||+++..||..+-.....+.-+++.-+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 345888899999999999999999887666677777765443
No 431
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=90.38 E-value=0.15 Score=51.37 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=21.6
Q ss_pred eEEEecCCCchHHHHHHHHHHHH
Q 003038 659 WLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
.+.+.||+|+|||++++.|++.+
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999999976
No 432
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=90.37 E-value=0.12 Score=50.83 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=21.0
Q ss_pred eEEEecCCCchHHHHHHHHHHHH
Q 003038 659 WLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
.+.|.||+|+|||++++.|+..+
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999999876
No 433
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=90.34 E-value=0.15 Score=52.56 Aligned_cols=25 Identities=12% Similarity=0.095 Sum_probs=22.6
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHH
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
...++|+|+||+|||++++.|++++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999999875
No 434
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=90.33 E-value=0.36 Score=57.30 Aligned_cols=69 Identities=12% Similarity=0.082 Sum_probs=38.8
Q ss_pred eEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCCchHHHHHHHHHcCCCEEEEE
Q 003038 659 WLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSCSYIERFAEAVSNNPHRVFLI 738 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~g~~e~L~eav~~~p~~Vili 738 (854)
..|++||||+|||.++-.+...+......++....+ .--.+.+.+.+......++-+
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T-----------------------N~AvD~i~erL~~~~~~ilRl 263 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS-----------------------NIAVDNLVERLALCKQRILRL 263 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS-----------------------HHHHHHHHHHHHHTTCCEEEC
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc-----------------------hHHHHHHHHHHHhcCCceEEe
Confidence 578999999999977665555554433333322211 012234555555555566666
Q ss_pred ecCCCCCHHHHH
Q 003038 739 EDVEQADYCSQK 750 (854)
Q Consensus 739 DEieka~~~v~~ 750 (854)
-.-.+.++.++.
T Consensus 264 G~~~r~~~~~~~ 275 (646)
T 4b3f_X 264 GHPARLLESIQQ 275 (646)
T ss_dssp SCCSSCCHHHHT
T ss_pred cchhhhhhhhhh
Confidence 555555555443
No 435
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=90.31 E-value=0.81 Score=52.01 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=30.9
Q ss_pred HHHHHhhcc-CcCCceeecCCCCCHHHHHHHHHHHHHcC
Q 003038 217 YVIENLMSK-RKRNFVVVGECLASIEGVVRGVIDKIEKG 254 (854)
Q Consensus 217 ~v~~~L~r~-~k~n~vLvGe~GvGKta~v~~la~~i~~~ 254 (854)
++|+.|.-= +.....|+|++|||||+++..++..+.+.
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~ 180 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKA 180 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTTT
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhhHhh
Confidence 677777532 66778899999999999999999888654
No 436
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.31 E-value=0.5 Score=51.66 Aligned_cols=38 Identities=13% Similarity=0.140 Sum_probs=31.1
Q ss_pred ceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccc
Q 003038 657 ETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALS 694 (854)
Q Consensus 657 ~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s 694 (854)
...+.|.|++|+|||+++..|+..+......+..++..
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 35789999999999999999999887666666666554
No 437
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.27 E-value=0.13 Score=50.85 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=21.7
Q ss_pred eEEEecCCCchHHHHHHHHHHHH
Q 003038 659 WLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
.+.|.|++|+|||++++.|++.+
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999976
No 438
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.25 E-value=0.58 Score=52.98 Aligned_cols=55 Identities=9% Similarity=0.080 Sum_probs=37.4
Q ss_pred cHHHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcccc
Q 003038 211 RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLSIS 271 (854)
Q Consensus 211 r~~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~~~ 271 (854)
.=.++..++. .=....-++|.|+||+|||+++..+|..+.... =..+-+++++++
T Consensus 189 G~~~LD~~~g--Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~----g~~Vl~~s~E~s 243 (454)
T 2r6a_A 189 GFTELDRMTS--GFQRSDLIIVAARPSVGKTAFALNIAQNVATKT----NENVAIFSLEMS 243 (454)
T ss_dssp SCHHHHHHHS--SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS----SCCEEEEESSSC
T ss_pred CcHHHHhhcC--CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC----CCcEEEEECCCC
Confidence 3456777662 223566789999999999999999999876420 023556666653
No 439
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=90.24 E-value=0.27 Score=53.07 Aligned_cols=38 Identities=21% Similarity=0.114 Sum_probs=28.7
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCC------CCceEEEcccc
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGS------HNNFVSIALSS 695 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~------~~~~i~id~s~ 695 (854)
..++++||+|+|||.+|..+|..+--. ....+.++...
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 378999999999999999999865221 34667776553
No 440
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.22 E-value=0.31 Score=52.41 Aligned_cols=35 Identities=14% Similarity=0.131 Sum_probs=27.3
Q ss_pred ceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEE
Q 003038 657 ETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSI 691 (854)
Q Consensus 657 ~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~i 691 (854)
...+.|.||+|+|||++++.||..+-.....+.-.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~ 136 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFC 136 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 35889999999999999999999886544443333
No 441
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=90.18 E-value=0.16 Score=51.14 Aligned_cols=25 Identities=8% Similarity=0.125 Sum_probs=21.9
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHH
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
+..+.|+|++|+|||++++.|+..+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999999764
No 442
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=90.18 E-value=0.17 Score=50.47 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=22.8
Q ss_pred ceeEEEecCCCchHHHHHHHHHHHH
Q 003038 657 ETWLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 657 ~~~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
...+.+.||+|+|||++++.|+..+
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3478899999999999999999987
No 443
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=90.17 E-value=0.43 Score=53.28 Aligned_cols=38 Identities=13% Similarity=0.027 Sum_probs=27.7
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhC------CCCceEEEcccc
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFG------SHNNFVSIALSS 695 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg------~~~~~i~id~s~ 695 (854)
..+.++||+|+|||+|++.|+-...- .....+.++..+
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 37899999999999999987744321 234577777553
No 444
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=90.11 E-value=0.23 Score=51.72 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhcc--CcCCceeecCCCCCHHHHHHHHHHH
Q 003038 213 EDVMYVIENLMSK--RKRNFVVVGECLASIEGVVRGVIDK 250 (854)
Q Consensus 213 ~ei~~v~~~L~r~--~k~n~vLvGe~GvGKta~v~~la~~ 250 (854)
+.+..++.-+... +.-+++|+|.+|||||+++..+...
T Consensus 20 ~~l~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 20 EKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred HHHHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3344444444443 4458999999999999999988753
No 445
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=90.08 E-value=0.16 Score=50.32 Aligned_cols=31 Identities=10% Similarity=0.086 Sum_probs=0.0
Q ss_pred CCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcc
Q 003038 228 RNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLS 269 (854)
Q Consensus 228 ~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~ 269 (854)
..+.|+|++|+|||++++.|+. + |..++..|
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~----------g~~~i~~d 32 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-L----------GAYVLDAD 32 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-T----------TCEEEEHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-C----------CCEEEEcc
No 446
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=90.07 E-value=0.58 Score=50.99 Aligned_cols=39 Identities=5% Similarity=-0.043 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHH
Q 003038 213 EDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIE 252 (854)
Q Consensus 213 ~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~ 252 (854)
.++..++.= .=.....++|+||||+|||+++..+|....
T Consensus 109 ~~LD~~LgG-Gl~~G~i~~I~G~~GsGKTtla~~la~~~~ 147 (343)
T 1v5w_A 109 QEFDKLLGG-GIESMAITEAFGEFRTGKTQLSHTLCVTAQ 147 (343)
T ss_dssp HHHHHHTTS-SBCSSEEEEEECCTTCTHHHHHHHHHHHTT
T ss_pred hhHHHHhcC-CCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456555420 012566789999999999999999987643
No 447
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.04 E-value=0.25 Score=55.74 Aligned_cols=42 Identities=19% Similarity=0.295 Sum_probs=31.9
Q ss_pred cceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEcccccc
Q 003038 656 EETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFS 697 (854)
Q Consensus 656 p~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~ 697 (854)
+...++|.|++|+|||+++..||..+-.......-+++..|.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r 139 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR 139 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccC
Confidence 345899999999999999999998775333456666666543
No 448
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=90.02 E-value=0.2 Score=50.22 Aligned_cols=39 Identities=10% Similarity=0.060 Sum_probs=28.1
Q ss_pred HHHHHHHHhhcc--CcCCceeecCCCCCHHHHHHHHHHHHH
Q 003038 214 DVMYVIENLMSK--RKRNFVVVGECLASIEGVVRGVIDKIE 252 (854)
Q Consensus 214 ei~~v~~~L~r~--~k~n~vLvGe~GvGKta~v~~la~~i~ 252 (854)
-+.++.+-+..+ ...-+.|+|++|+|||++++.|+..+.
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 344555544432 344578999999999999999998765
No 449
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=89.97 E-value=0.36 Score=46.69 Aligned_cols=25 Identities=12% Similarity=0.266 Sum_probs=21.4
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHH
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDK 250 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~ 250 (854)
.+.+++|+|++|||||+++..+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 4568999999999999999987654
No 450
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=89.95 E-value=0.23 Score=48.01 Aligned_cols=27 Identities=11% Similarity=0.326 Sum_probs=24.0
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCC
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSH 685 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~ 685 (854)
..+.|.||.|+|||++.|.|+..+ +..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l-~~~ 60 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI-GHQ 60 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT-TCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC-CCC
Confidence 478899999999999999999998 543
No 451
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=89.93 E-value=0.15 Score=50.03 Aligned_cols=21 Identities=5% Similarity=0.167 Sum_probs=19.3
Q ss_pred CceeecCCCCCHHHHHHHHHH
Q 003038 229 NFVVVGECLASIEGVVRGVID 249 (854)
Q Consensus 229 n~vLvGe~GvGKta~v~~la~ 249 (854)
.++|+|++|+|||++++.|+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999986
No 452
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=89.87 E-value=0.75 Score=58.01 Aligned_cols=47 Identities=23% Similarity=0.235 Sum_probs=36.4
Q ss_pred CcccccHHHHHHHHHHHHHhhcCCCcccCCCcCCcccCcceeEEEecCCCchHHHHHHHHHHH
Q 003038 618 KKVPWQKDTVYDIANTVLKCRSGTMRRKGKFKDHSEVKEETWLFFQGVDADAKEKIAKELARL 680 (854)
Q Consensus 618 ~~V~GQ~~av~~Ia~~v~~~rsgl~~~~~~~~~~~~~kp~~~lLf~Gp~GvGKt~lAr~LA~~ 680 (854)
..++|-++.+..|...+.... .....+.++|+.|+|||+||+.++..
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~~----------------~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKLN----------------GEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTTT----------------TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred ceeccHHHHHHHHHHHHhhcc----------------CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 457899988888888876421 12357889999999999999988754
No 453
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=89.81 E-value=0.14 Score=50.33 Aligned_cols=23 Identities=9% Similarity=0.199 Sum_probs=20.6
Q ss_pred CceeecCCCCCHHHHHHHHHHHH
Q 003038 229 NFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 229 n~vLvGe~GvGKta~v~~la~~i 251 (854)
-++|+||+|+|||++++.|+..+
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 46899999999999999999775
No 454
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.78 E-value=0.17 Score=53.56 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=20.7
Q ss_pred CCceeecCCCCCHHHHHHHHHHH
Q 003038 228 RNFVVVGECLASIEGVVRGVIDK 250 (854)
Q Consensus 228 ~n~vLvGe~GvGKta~v~~la~~ 250 (854)
..++|+|+||+|||++++.|+++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999999975
No 455
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=89.76 E-value=0.14 Score=50.22 Aligned_cols=24 Identities=8% Similarity=0.120 Sum_probs=19.9
Q ss_pred CcCCceeecCCCCCHHHHHHHHHH
Q 003038 226 RKRNFVVVGECLASIEGVVRGVID 249 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~ 249 (854)
+.-+++++|++|||||+++..+..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 455899999999999999998774
No 456
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.68 E-value=0.15 Score=47.75 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=20.0
Q ss_pred CCceeecCCCCCHHHHHHHHHHH
Q 003038 228 RNFVVVGECLASIEGVVRGVIDK 250 (854)
Q Consensus 228 ~n~vLvGe~GvGKta~v~~la~~ 250 (854)
.+++++|++|||||+++..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999988753
No 457
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.67 E-value=0.17 Score=51.53 Aligned_cols=23 Identities=22% Similarity=0.101 Sum_probs=21.0
Q ss_pred CceeecCCCCCHHHHHHHHHHHH
Q 003038 229 NFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 229 n~vLvGe~GvGKta~v~~la~~i 251 (854)
+++|.|+||+|||++++.|+.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 458
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=89.66 E-value=0.19 Score=50.64 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=21.5
Q ss_pred eeEEEecCCCchHHHHHHHHHHHH
Q 003038 658 TWLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
..+.|.||+|+|||+|++.|++.+
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECcCCCCHHHHHHHHHhhC
Confidence 378899999999999999999864
No 459
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=89.62 E-value=0.17 Score=50.02 Aligned_cols=25 Identities=16% Similarity=0.321 Sum_probs=21.6
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHH
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
..-+.|+||+|+|||++++.|+..+
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4567899999999999999998763
No 460
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=89.62 E-value=0.3 Score=52.83 Aligned_cols=85 Identities=9% Similarity=0.072 Sum_probs=47.3
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhC--CCCceEEEccccccCc-CCCccccccccccC-CCCCCchHHHH----HHH--
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFG--SHNNFVSIALSSFSST-RADSTEDSRNKRSR-DEQSCSYIERF----AEA-- 727 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg--~~~~~i~id~s~~~~~-~~~s~e~~~~~rl~-~~~g~g~~e~L----~ea-- 727 (854)
+..++.||+|+|||.|+..++...-. .....+.||.-+-... +.... .....+++ ..+. ..+++ .+.
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~l-Gvd~d~llv~~~~--~~E~~~l~i~~~l~ 105 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSM-GVDPERVIHTPVQ--SLEQLRIDMVNQLD 105 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHT-TCCGGGEEEEECS--BHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHh-CCCHHHeEEEcCC--CHHHHHHHHHHHHH
Confidence 46899999999999999877765532 2456777875432210 00000 00011111 1111 12222 223
Q ss_pred -HHcCCCEEEEEecCCCCC
Q 003038 728 -VSNNPHRVFLIEDVEQAD 745 (854)
Q Consensus 728 -v~~~p~~ViliDEieka~ 745 (854)
++.....+|++|-|--+.
T Consensus 106 ~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 106 AIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp TCCTTCCEEEEEECSTTCB
T ss_pred HhhccCceEEEEecccccc
Confidence 466678999999998774
No 461
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=89.57 E-value=0.71 Score=52.09 Aligned_cols=53 Identities=8% Similarity=0.011 Sum_probs=36.3
Q ss_pred cHHHHHHHHHHhhccCcCCceeecCCCCCHHHHHHHHHHHHHcC-CCCcccCCceEEEccc
Q 003038 211 RNEDVMYVIENLMSKRKRNFVVVGECLASIEGVVRGVIDKIEKG-DVPEALRDVKCLPLSI 270 (854)
Q Consensus 211 r~~ei~~v~~~L~r~~k~n~vLvGe~GvGKta~v~~la~~i~~~-~vp~~L~~~~~~~l~~ 270 (854)
.=.++..++.=| ....-++|.|+||+|||+++..+|..+..+ . ..+-++++.+
T Consensus 186 G~~~LD~~lgGl--~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g-----~~vl~~slE~ 239 (444)
T 2q6t_A 186 GFKELDQLIGTL--GPGSLNIIAARPAMGKTAFALTIAQNAALKEG-----VGVGIYSLEM 239 (444)
T ss_dssp SCHHHHHHHCCC--CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-----CCEEEEESSS
T ss_pred CCHhhhhhcCCc--CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-----CeEEEEECCC
Confidence 345666665212 245568999999999999999999988753 2 1345566654
No 462
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=89.57 E-value=0.25 Score=51.16 Aligned_cols=39 Identities=21% Similarity=0.353 Sum_probs=30.0
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCC------CCceEEEcccccc
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGS------HNNFVSIALSSFS 697 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~------~~~~i~id~s~~~ 697 (854)
..+.+.|++|+|||++|+.|++.+ |- ....+.+++..|.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l-g~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL-GQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT-TGGGSCGGGCSEEEEEGGGGB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh-hhhcccccCCceEEEecCccc
Confidence 478999999999999999999976 31 1234567777665
No 463
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=89.54 E-value=0.34 Score=51.96 Aligned_cols=40 Identities=23% Similarity=0.189 Sum_probs=29.5
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHh--CCCCceEEEcccccc
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVF--GSHNNFVSIALSSFS 697 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lf--g~~~~~i~id~s~~~ 697 (854)
..+.+.||+|+|||++++.|+..+- .....+..+++..+.
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 4788999999999999999999874 233344455555443
No 464
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=89.53 E-value=0.42 Score=49.37 Aligned_cols=24 Identities=8% Similarity=0.196 Sum_probs=21.0
Q ss_pred CcCCceeecCCCCCHHHHHHHHHH
Q 003038 226 RKRNFVVVGECLASIEGVVRGVID 249 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~ 249 (854)
..-+++|+|.+|||||+++..+..
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999998864
No 465
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=89.52 E-value=0.12 Score=51.48 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=21.4
Q ss_pred eEEEecCCCchHHHHHHHHHHHH
Q 003038 659 WLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
.+.|.|++|+|||++++.|++.+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999987
No 466
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=89.52 E-value=0.22 Score=48.46 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=28.4
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHHHcCCCCcccCCceEEEcc
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKIEKGDVPEALRDVKCLPLS 269 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i~~~~vp~~L~~~~~~~l~ 269 (854)
+...++|+|++|+|||++++.|+..+.. .|..++.++
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~-------~g~~~i~~d 40 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVC-------HGIPCYTLD 40 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH-------TTCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh-------CCCcEEEEC
Confidence 3457899999999999999999987643 244566555
No 467
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=89.43 E-value=0.18 Score=49.84 Aligned_cols=26 Identities=12% Similarity=0.101 Sum_probs=22.5
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHH
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
....++|+|++|+|||++++.|+..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34578999999999999999998765
No 468
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.37 E-value=0.16 Score=48.26 Aligned_cols=23 Identities=9% Similarity=0.013 Sum_probs=19.7
Q ss_pred cCCceeecCCCCCHHHHHHHHHH
Q 003038 227 KRNFVVVGECLASIEGVVRGVID 249 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~ 249 (854)
.-+++|+|++|||||+++..+..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEEECCCCccHHHHHHHHhc
Confidence 45789999999999999987763
No 469
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.34 E-value=0.3 Score=54.74 Aligned_cols=26 Identities=15% Similarity=0.015 Sum_probs=22.1
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHHH
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
...-++|+|+||+|||++++.|+++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 45567899999999999999998753
No 470
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=89.32 E-value=0.24 Score=48.13 Aligned_cols=27 Identities=19% Similarity=0.210 Sum_probs=22.7
Q ss_pred eeEEEecCCCchHHHHHH------------HHHHHHhCC
Q 003038 658 TWLFFQGVDADAKEKIAK------------ELARLVFGS 684 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr------------~LA~~lfg~ 684 (854)
..+.++||+|+|||++++ .+...+|..
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~ 48 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDD 48 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSS
T ss_pred EEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCc
Confidence 488999999999999999 666666654
No 471
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=89.23 E-value=1.1 Score=52.05 Aligned_cols=52 Identities=10% Similarity=0.012 Sum_probs=33.4
Q ss_pred CCCCCCCCC--cHHHHHHHHHHhh--c-cCcCCceeecCCCCCHHHHHHHHHHHHHc
Q 003038 202 KPRVSLDPI--RNEDVMYVIENLM--S-KRKRNFVVVGECLASIEGVVRGVIDKIEK 253 (854)
Q Consensus 202 ~~~g~ldpv--r~~ei~~v~~~L~--r-~~k~n~vLvGe~GvGKta~v~~la~~i~~ 253 (854)
.++|..-|- .-.||-+++.-.. + +....++|+|.+|+|||++++.|+.++..
T Consensus 342 L~~g~~~p~~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 342 LKQGRKLPEWFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp HTTTCCCCTTTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred hcCCCCCCccccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 335655543 2234444444433 1 12346789999999999999999998753
No 472
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=89.16 E-value=0.2 Score=47.85 Aligned_cols=25 Identities=8% Similarity=0.151 Sum_probs=21.4
Q ss_pred cCcCCceeecCCCCCHHHHHHHHHH
Q 003038 225 KRKRNFVVVGECLASIEGVVRGVID 249 (854)
Q Consensus 225 ~~k~n~vLvGe~GvGKta~v~~la~ 249 (854)
++..+++|+|++|||||+++..+..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3567899999999999999988763
No 473
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=89.15 E-value=3.4 Score=41.96 Aligned_cols=27 Identities=15% Similarity=-0.027 Sum_probs=20.0
Q ss_pred cCCceeecCCCCCHHHHHH-HHHHHHHc
Q 003038 227 KRNFVVVGECLASIEGVVR-GVIDKIEK 253 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~-~la~~i~~ 253 (854)
.+|+++++|+|+|||.+.- .+..++..
T Consensus 66 g~~~l~~apTGsGKT~~~~l~~l~~l~~ 93 (242)
T 3fe2_A 66 GLDMVGVAQTGSGKTLSYLLPAIVHINH 93 (242)
T ss_dssp TCCEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CCCEEEECCCcCHHHHHHHHHHHHHHHh
Confidence 4799999999999997643 34455543
No 474
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=89.11 E-value=0.68 Score=53.26 Aligned_cols=27 Identities=7% Similarity=-0.005 Sum_probs=23.4
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHHHc
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKIEK 253 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i~~ 253 (854)
.++++++|.||||||+++..||..+.+
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 457899999999999999999988765
No 475
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=89.08 E-value=0.32 Score=48.15 Aligned_cols=25 Identities=8% Similarity=-0.001 Sum_probs=20.9
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHH
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKI 251 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i 251 (854)
.+|+++++|+|+|||.++-.++...
T Consensus 48 ~~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 48 GKNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCCCHHHHHHHHHHHH
Confidence 4789999999999999887766543
No 476
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=89.05 E-value=1.9 Score=46.48 Aligned_cols=31 Identities=10% Similarity=0.134 Sum_probs=22.5
Q ss_pred HHHHhhccCcCCceeecCCCCCHHHHHHHHH
Q 003038 218 VIENLMSKRKRNFVVVGECLASIEGVVRGVI 248 (854)
Q Consensus 218 v~~~L~r~~k~n~vLvGe~GvGKta~v~~la 248 (854)
++..+....++|+++++|+|+|||.++-..+
T Consensus 35 ~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 35 ALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp HHHHHHCSSCCCEEEECCTTSCHHHHHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCcHHHHHHHHH
Confidence 4444444566899999999999997665433
No 477
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.00 E-value=0.2 Score=49.91 Aligned_cols=25 Identities=4% Similarity=0.110 Sum_probs=21.7
Q ss_pred CcCCceeecCCCCCHHHHHHHHHHH
Q 003038 226 RKRNFVVVGECLASIEGVVRGVIDK 250 (854)
Q Consensus 226 ~k~n~vLvGe~GvGKta~v~~la~~ 250 (854)
...+++|+|++|||||+++..+...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999988764
No 478
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=88.96 E-value=0.15 Score=50.40 Aligned_cols=34 Identities=18% Similarity=0.108 Sum_probs=24.3
Q ss_pred HHHHHHHhh-ccCcCCceeecCCCCCHHHHHHHHH
Q 003038 215 VMYVIENLM-SKRKRNFVVVGECLASIEGVVRGVI 248 (854)
Q Consensus 215 i~~v~~~L~-r~~k~n~vLvGe~GvGKta~v~~la 248 (854)
+..+++-+. ..+.-+++|+|++|||||+++..+.
T Consensus 12 ~~~~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 12 FSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp -CHHHHHHTCTTCCEEEEEEEETTSSHHHHHHHHS
T ss_pred HHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHh
Confidence 344555542 2345579999999999999998775
No 479
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.89 E-value=0.8 Score=45.47 Aligned_cols=28 Identities=11% Similarity=0.090 Sum_probs=23.5
Q ss_pred cceeEEEecCCCchHHHHHHHHHHHHhC
Q 003038 656 EETWLFFQGVDADAKEKIAKELARLVFG 683 (854)
Q Consensus 656 p~~~lLf~Gp~GvGKt~lAr~LA~~lfg 683 (854)
....++|+|++|+|||++...|....|.
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~ 38 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVR 38 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3458999999999999999999876553
No 480
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=88.89 E-value=0.22 Score=49.88 Aligned_cols=24 Identities=17% Similarity=0.247 Sum_probs=22.1
Q ss_pred eeEEEecCCCchHHHHHHHHHHHH
Q 003038 658 TWLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
-.+.+.||+|+|||++++.|+.++
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 378899999999999999999987
No 481
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=88.87 E-value=0.17 Score=48.27 Aligned_cols=22 Identities=5% Similarity=0.143 Sum_probs=19.5
Q ss_pred CCceeecCCCCCHHHHHHHHHH
Q 003038 228 RNFVVVGECLASIEGVVRGVID 249 (854)
Q Consensus 228 ~n~vLvGe~GvGKta~v~~la~ 249 (854)
..++|+|++|||||+++..++.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999998864
No 482
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=88.84 E-value=0.29 Score=51.11 Aligned_cols=23 Identities=4% Similarity=0.148 Sum_probs=20.3
Q ss_pred CCceeecCCCCCHHHHHHHHHHH
Q 003038 228 RNFVVVGECLASIEGVVRGVIDK 250 (854)
Q Consensus 228 ~n~vLvGe~GvGKta~v~~la~~ 250 (854)
++++|+|.||||||+++..|...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999998754
No 483
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=88.83 E-value=0.48 Score=53.43 Aligned_cols=27 Identities=11% Similarity=-0.073 Sum_probs=23.9
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHHHc
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDKIEK 253 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~i~~ 253 (854)
.+.++++|++|||||+++..||..+..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 456889999999999999999988765
No 484
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=88.80 E-value=0.2 Score=46.91 Aligned_cols=24 Identities=13% Similarity=0.131 Sum_probs=20.3
Q ss_pred cCCceeecCCCCCHHHHHHHHHHH
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDK 250 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~ 250 (854)
+-+++++|++|||||+++..+...
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 347899999999999999887653
No 485
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=88.78 E-value=0.39 Score=49.36 Aligned_cols=38 Identities=8% Similarity=0.002 Sum_probs=30.3
Q ss_pred ceeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccc
Q 003038 657 ETWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALS 694 (854)
Q Consensus 657 ~~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s 694 (854)
...++|.|++|||||++|-.+|..+-......+-+++.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D 43 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVE 43 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 45789999999999999999998876555566666654
No 486
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=88.72 E-value=0.43 Score=53.49 Aligned_cols=32 Identities=13% Similarity=0.144 Sum_probs=25.7
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccc
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALS 694 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s 694 (854)
..+++.|++|+|||++|+.|++.+ .+..++..
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~-----~~~~i~~D 290 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSA-----GYVHVNRD 290 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGG-----TCEECCGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHhc-----CcEEEccc
Confidence 478999999999999999999865 34555544
No 487
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.72 E-value=0.2 Score=53.88 Aligned_cols=31 Identities=16% Similarity=0.241 Sum_probs=26.4
Q ss_pred cCcCCceeecCCCCCHHHHHHHHHHHHHcCCC
Q 003038 225 KRKRNFVVVGECLASIEGVVRGVIDKIEKGDV 256 (854)
Q Consensus 225 ~~k~n~vLvGe~GvGKta~v~~la~~i~~~~v 256 (854)
+.+..+.|+||+|+|||++++.|+.-+ .|.|
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I 154 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL-GGSV 154 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH-TCEE
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc-CceE
Confidence 466778999999999999999999877 6653
No 488
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=88.69 E-value=0.25 Score=48.69 Aligned_cols=23 Identities=17% Similarity=0.098 Sum_probs=21.3
Q ss_pred eeEEEecCCCchHHHHHHHHHHH
Q 003038 658 TWLFFQGVDADAKEKIAKELARL 680 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~ 680 (854)
..+.+.|++|+|||++|+.||+.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 47899999999999999999995
No 489
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=88.63 E-value=0.26 Score=47.92 Aligned_cols=28 Identities=14% Similarity=0.229 Sum_probs=24.8
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCC
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSH 685 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~ 685 (854)
+..+|+||+|+|||++.++|.-.+++..
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~~~~ 54 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLGGLS 54 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTTCCC
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 4789999999999999999999987643
No 490
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=88.60 E-value=0.21 Score=50.63 Aligned_cols=24 Identities=21% Similarity=0.120 Sum_probs=21.8
Q ss_pred eeEEEecCCCchHHHHHHHHHHHH
Q 003038 658 TWLFFQGVDADAKEKIAKELARLV 681 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~l 681 (854)
..+.|+||+|+|||+|++.|+..+
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 368899999999999999999976
No 491
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.58 E-value=0.18 Score=48.77 Aligned_cols=23 Identities=4% Similarity=0.138 Sum_probs=20.4
Q ss_pred cCCceeecCCCCCHHHHHHHHHH
Q 003038 227 KRNFVVVGECLASIEGVVRGVID 249 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~ 249 (854)
+-+++|+|++|||||+++..++.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45799999999999999998874
No 492
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=88.55 E-value=0.21 Score=47.01 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=20.7
Q ss_pred cCCceeecCCCCCHHHHHHHHHHH
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDK 250 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~ 250 (854)
.-+++++|++|||||+++..+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 457899999999999999988753
No 493
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=88.54 E-value=0.24 Score=49.52 Aligned_cols=34 Identities=12% Similarity=0.101 Sum_probs=27.9
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccc
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSF 696 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~ 696 (854)
..+.+.|++|+|||++|+.|++.+ | +..+|+..+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l-g----~~vid~D~~ 46 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY-G----AHVVNVDRI 46 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH-C----CEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc-C----CEEEECcHH
Confidence 478899999999999999999975 3 455666655
No 494
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=88.52 E-value=0.36 Score=48.97 Aligned_cols=37 Identities=11% Similarity=0.097 Sum_probs=27.7
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccc
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALS 694 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s 694 (854)
..+++.||+|+|||+++..++..+.......+.++..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 3789999999999999998887664444455555543
No 495
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=88.52 E-value=0.17 Score=49.26 Aligned_cols=21 Identities=10% Similarity=0.328 Sum_probs=18.6
Q ss_pred CceeecCCCCCHHHHHHHHHH
Q 003038 229 NFVVVGECLASIEGVVRGVID 249 (854)
Q Consensus 229 n~vLvGe~GvGKta~v~~la~ 249 (854)
.++|+|++|||||+++..++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999987764
No 496
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=88.38 E-value=3.3 Score=41.21 Aligned_cols=25 Identities=8% Similarity=0.177 Sum_probs=18.9
Q ss_pred cCCceeecCCCCCHHHH-HHHHHHHH
Q 003038 227 KRNFVVVGECLASIEGV-VRGVIDKI 251 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~-v~~la~~i 251 (854)
.+|+++++|+|+|||.+ +-.+..++
T Consensus 51 ~~~~lv~~pTGsGKT~~~~~~~l~~l 76 (224)
T 1qde_A 51 GHDVLAQAQSGTGKTGTFSIAALQRI 76 (224)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 47899999999999976 33444444
No 497
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=88.37 E-value=0.22 Score=49.57 Aligned_cols=21 Identities=19% Similarity=0.124 Sum_probs=19.8
Q ss_pred eEEEecCCCchHHHHHHHHHH
Q 003038 659 WLFFQGVDADAKEKIAKELAR 679 (854)
Q Consensus 659 ~lLf~Gp~GvGKt~lAr~LA~ 679 (854)
.+.+.||+|+|||++++.||.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999998
No 498
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.36 E-value=0.22 Score=48.84 Aligned_cols=29 Identities=10% Similarity=0.203 Sum_probs=21.9
Q ss_pred hhccCcCCceeecCCCCCHHHHHHHHHHH
Q 003038 222 LMSKRKRNFVVVGECLASIEGVVRGVIDK 250 (854)
Q Consensus 222 L~r~~k~n~vLvGe~GvGKta~v~~la~~ 250 (854)
+.+...-+++|+|++|||||+++..+...
T Consensus 23 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 23 MAKSAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp ----CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34445678999999999999999988753
No 499
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=88.35 E-value=0.95 Score=51.41 Aligned_cols=96 Identities=11% Similarity=0.036 Sum_probs=52.3
Q ss_pred eeEEEecCCCchHHHHHHHHHHHHhCCCCceEEEccccccCcCCCccccccccccCCCCCC-ch--HHH--------HHH
Q 003038 658 TWLFFQGVDADAKEKIAKELARLVFGSHNNFVSIALSSFSSTRADSTEDSRNKRSRDEQSC-SY--IER--------FAE 726 (854)
Q Consensus 658 ~~lLf~Gp~GvGKt~lAr~LA~~lfg~~~~~i~id~s~~~~~~~~s~e~~~~~rl~~~~g~-g~--~e~--------L~e 726 (854)
..++|+|.+|+|||++++.||+.++-.......++...+..... .......+....+. ++ .+. +..
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~---g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMV---KTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHH---CSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhc---cCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999998864433444444333220000 00000011122221 11 111 133
Q ss_pred HHHcCCCEEEEEecCCCCCHHHHHHHHHhhh
Q 003038 727 AVSNNPHRVFLIEDVEQADYCSQKGFKRAIE 757 (854)
Q Consensus 727 av~~~p~~ViliDEieka~~~v~~~Ll~~le 757 (854)
.+......++++|.... ...-...+++.+.
T Consensus 117 ~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~ 146 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNT-TRERRAMIFNFGE 146 (469)
T ss_dssp HHHTTCCSEEEEESCCC-SHHHHHHHHHHHH
T ss_pred HHHhCCCCEEEEeCCCC-CHHHHHHHHHHHH
Confidence 34445566899998876 5555566666554
No 500
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=88.34 E-value=0.22 Score=46.67 Aligned_cols=24 Identities=8% Similarity=0.084 Sum_probs=20.7
Q ss_pred cCCceeecCCCCCHHHHHHHHHHH
Q 003038 227 KRNFVVVGECLASIEGVVRGVIDK 250 (854)
Q Consensus 227 k~n~vLvGe~GvGKta~v~~la~~ 250 (854)
.-+++++|++|||||+++..+...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999988753
Done!