BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003040
(854 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N5X|A Chain A, Xanthine Dehydrogenase From Bovine Milk With Inhibitor
Tei- 6720 Bound
pdb|1N5X|B Chain B, Xanthine Dehydrogenase From Bovine Milk With Inhibitor
Tei- 6720 Bound
Length = 1331
Score = 297 bits (760), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 243/868 (27%), Positives = 407/868 (46%), Gaps = 83/868 (9%)
Query: 10 TRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSXXXXXXXXXXXXXXXXXSKYNPE 69
T +VF VNG+K + DP TTLL +LR + SKY+
Sbjct: 1 TADELVFFVNGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLSKYDRL 60
Query: 70 LDQLEDFTISSCLTLLCSVNGCLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMC 129
D++ F+ ++CL +C+++ +TT EG+G++KT HP+ +R A H SQCGFCTPG+
Sbjct: 61 QDKIIHFSANACLAPICTLHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGIV 120
Query: 130 MSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIADACKSFAADVDI 189
MS+++ L ++PEP T+ E E A GNLCRCTGYRPI ++FA +
Sbjct: 121 MSMYTLL-----RNQPEP-------TVEEIEDAFQGNLCRCTGYRPILQGFRTFAKNGGC 168
Query: 190 EDLGINSFWAKGESKEVKISRLPPYKHNGEL------CRFPLF----LKKENSSAMLLDV 239
N+ K+ L P N E + P+F L+ ++ L
Sbjct: 169 CGGNGNNPNCCMNQKKDHTVTLSPSLFNPEEFMPLDPTQEPIFPPELLRLKDVPPKQLRF 228
Query: 240 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEH--YDKYIDIRYIPEL 297
+G + I L+ +L+ + +KLV GNT +G + ++ + I +IPEL
Sbjct: 229 EGERVTWIQASTLKELLDL--KAQHPEAKLVVGNTEIGIEMKFKNQLFPMIICPAWIPEL 286
Query: 298 SVIRRDQTGIEIGATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSAS 357
+ + GI GA +S + L E + ++ VF+ + + A + +++ AS
Sbjct: 287 NAVEHGPEGISFGAACALSSVEKTLLEAVAKLPTQKTEVFRGVLEQLRWFAGKQVKSVAS 346
Query: 358 VGGNLVMAQRKHFPSDVATVLLGAGAMVNIMT-GQKCEKLMLEEFL---ERPPLDSRSIL 413
+GGN++ A SD+ V + +G + I++ G + M F + L IL
Sbjct: 347 LGGNIITASPI---SDLNPVFMASGTKLTIVSRGTRRTVPMDHTFFPSYRKTLLGPEEIL 403
Query: 414 LSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRV 473
LS+EIP + F ++ A R + + + P ++V
Sbjct: 404 LSIEIP----------YSREDEFFSAFKQASR-REDDIAKVTCGMRVLFQP----GSMQV 448
Query: 474 NNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRD--SVVPEDGTSIPAYR 531
L +G + I A + + K N +L + L + S+ P+ + +R
Sbjct: 449 KELALCYGGMADR-TISALKTTQKQLSKFWNEKLLQDVCAGLAEELSLSPDAPGGMIEFR 507
Query: 532 SSLAVGFLYEFFGSLTEMKNGISRDWLCG-----YSNNVSLKDSHVQQNHKQFDESKVPT 586
+L + F ++F+ ++ + S+D CG Y++ L H N + F E VP
Sbjct: 508 RTLTLSFFFKFYLTVLKKLGKDSKD-KCGKLDPTYTSATLLFQKHPPANIQLFQE--VPN 564
Query: 587 LLSSAEQVVQLSREYYPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLA 646
S + VG P+ AA+QASGEA+Y DDIP N L+ + ST+ A
Sbjct: 565 GQSKEDT----------VGRPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHA 614
Query: 647 RIKGIEF-KSESVPDVVTALLSYKDIPEGGQNIGSKTIFGSEPLFADELTRCAGQPVAFV 705
+IK I+ +++ VP V LS DIP G G +F E +FA + C G + V
Sbjct: 615 KIKSIDVSEAQKVPGFV-CFLSADDIP-GSNETG---LFNDETVFAKDTVTCVGHIIGAV 669
Query: 706 VADSQKNXXXXXXXXXXXYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISKGMN 765
VAD+ ++ YE +L P I+++E+A+ +S + + GD+ KG +
Sbjct: 670 VADTPEHAERAAHVVKVTYE--DL-PAIITIEDAIKNNSFYGSELKIEK---GDLKKGFS 723
Query: 766 EADHRILAAEIKLGSQYYFYMETQTALAVPD-EDNCLVVYSSIQCPESAHATIARCLGIP 824
EAD+ +++ E+ +G Q +FY+ET +A+P E+ + ++ S Q + +A+ LG+P
Sbjct: 724 EADN-VVSGELYIGGQDHFYLETHCTIAIPKGEEGEMELFVSTQNAMKTQSFVAKMLGVP 782
Query: 825 EHNVRVITRRVGGAFGGKAIKAMPVSIS 852
+ + V +R+GG FGGK ++ VS++
Sbjct: 783 VNRILVRVKRMGGGFGGKETRSTLVSVA 810
>pdb|1FO4|A Chain A, Crystal Structure Of Xanthine Dehydrogenase Isolated From
Bovine Milk
pdb|1FO4|B Chain B, Crystal Structure Of Xanthine Dehydrogenase Isolated From
Bovine Milk
pdb|1V97|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
Fyx-051 Bound Form
pdb|1V97|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
Fyx-051 Bound Form
pdb|1VDV|A Chain A, Bovine Milk Xanthine Dehydrogenase Y-700 Bound Form
pdb|1VDV|B Chain B, Bovine Milk Xanthine Dehydrogenase Y-700 Bound Form
pdb|3BDJ|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With A Covalently Bound Oxipurinol Inhibitor
pdb|3BDJ|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With A Covalently Bound Oxipurinol Inhibitor
pdb|3AM9|A Chain A, Complex Of Bovine Xanthine Dehydrogenase And Trihydroxy
Fyx-051
pdb|3AM9|B Chain B, Complex Of Bovine Xanthine Dehydrogenase And Trihydroxy
Fyx-051
pdb|3AMZ|A Chain A, Bovine Xanthine Oxidoreductase Urate Bound Form
pdb|3AMZ|B Chain B, Bovine Xanthine Oxidoreductase Urate Bound Form
pdb|3AX7|A Chain A, Bovine Xanthine Oxidase, Protease Cleaved Form
pdb|3AX7|B Chain B, Bovine Xanthine Oxidase, Protease Cleaved Form
pdb|3AX9|A Chain A, Bovine Xanthone Oxidase, Protease Cleaved Form
pdb|3AX9|B Chain B, Bovine Xanthone Oxidase, Protease Cleaved Form
Length = 1332
Score = 297 bits (760), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 243/868 (27%), Positives = 407/868 (46%), Gaps = 83/868 (9%)
Query: 10 TRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSXXXXXXXXXXXXXXXXXSKYNPE 69
T +VF VNG+K + DP TTLL +LR + SKY+
Sbjct: 2 TADELVFFVNGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLSKYDRL 61
Query: 70 LDQLEDFTISSCLTLLCSVNGCLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMC 129
D++ F+ ++CL +C+++ +TT EG+G++KT HP+ +R A H SQCGFCTPG+
Sbjct: 62 QDKIIHFSANACLAPICTLHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGIV 121
Query: 130 MSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIADACKSFAADVDI 189
MS+++ L ++PEP T+ E E A GNLCRCTGYRPI ++FA +
Sbjct: 122 MSMYTLL-----RNQPEP-------TVEEIEDAFQGNLCRCTGYRPILQGFRTFAKNGGC 169
Query: 190 EDLGINSFWAKGESKEVKISRLPPYKHNGEL------CRFPLF----LKKENSSAMLLDV 239
N+ K+ L P N E + P+F L+ ++ L
Sbjct: 170 CGGNGNNPNCCMNQKKDHTVTLSPSLFNPEEFMPLDPTQEPIFPPELLRLKDVPPKQLRF 229
Query: 240 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEH--YDKYIDIRYIPEL 297
+G + I L+ +L+ + +KLV GNT +G + ++ + I +IPEL
Sbjct: 230 EGERVTWIQASTLKELLDL--KAQHPEAKLVVGNTEIGIEMKFKNQLFPMIICPAWIPEL 287
Query: 298 SVIRRDQTGIEIGATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSAS 357
+ + GI GA +S + L E + ++ VF+ + + A + +++ AS
Sbjct: 288 NAVEHGPEGISFGAACALSSVEKTLLEAVAKLPTQKTEVFRGVLEQLRWFAGKQVKSVAS 347
Query: 358 VGGNLVMAQRKHFPSDVATVLLGAGAMVNIMT-GQKCEKLMLEEFL---ERPPLDSRSIL 413
+GGN++ A SD+ V + +G + I++ G + M F + L IL
Sbjct: 348 LGGNIITASPI---SDLNPVFMASGTKLTIVSRGTRRTVPMDHTFFPSYRKTLLGPEEIL 404
Query: 414 LSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRV 473
LS+EIP + F ++ A R + + + P ++V
Sbjct: 405 LSIEIP----------YSREDEFFSAFKQASR-REDDIAKVTCGMRVLFQP----GSMQV 449
Query: 474 NNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRD--SVVPEDGTSIPAYR 531
L +G + I A + + K N +L + L + S+ P+ + +R
Sbjct: 450 KELALCYGGMADR-TISALKTTQKQLSKFWNEKLLQDVCAGLAEELSLSPDAPGGMIEFR 508
Query: 532 SSLAVGFLYEFFGSLTEMKNGISRDWLCG-----YSNNVSLKDSHVQQNHKQFDESKVPT 586
+L + F ++F+ ++ + S+D CG Y++ L H N + F E VP
Sbjct: 509 RTLTLSFFFKFYLTVLKKLGKDSKD-KCGKLDPTYTSATLLFQKHPPANIQLFQE--VPN 565
Query: 587 LLSSAEQVVQLSREYYPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLA 646
S + VG P+ AA+QASGEA+Y DDIP N L+ + ST+ A
Sbjct: 566 GQSKEDT----------VGRPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHA 615
Query: 647 RIKGIEF-KSESVPDVVTALLSYKDIPEGGQNIGSKTIFGSEPLFADELTRCAGQPVAFV 705
+IK I+ +++ VP V LS DIP G G +F E +FA + C G + V
Sbjct: 616 KIKSIDVSEAQKVPGFV-CFLSADDIP-GSNETG---LFNDETVFAKDTVTCVGHIIGAV 670
Query: 706 VADSQKNXXXXXXXXXXXYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISKGMN 765
VAD+ ++ YE +L P I+++E+A+ +S + + GD+ KG +
Sbjct: 671 VADTPEHAERAAHVVKVTYE--DL-PAIITIEDAIKNNSFYGSELKIEK---GDLKKGFS 724
Query: 766 EADHRILAAEIKLGSQYYFYMETQTALAVPD-EDNCLVVYSSIQCPESAHATIARCLGIP 824
EAD+ +++ E+ +G Q +FY+ET +A+P E+ + ++ S Q + +A+ LG+P
Sbjct: 725 EADN-VVSGELYIGGQDHFYLETHCTIAIPKGEEGEMELFVSTQNAMKTQSFVAKMLGVP 783
Query: 825 EHNVRVITRRVGGAFGGKAIKAMPVSIS 852
+ + V +R+GG FGGK ++ VS++
Sbjct: 784 VNRILVRVKRMGGGFGGKETRSTLVSVA 811
>pdb|3UNA|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With Nad Bound
pdb|3UNA|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With Nad Bound
pdb|3UNC|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase To
1.65a Resolution
pdb|3UNC|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase To
1.65a Resolution
pdb|3UNI|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With Nadh Bound
pdb|3UNI|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With Nadh Bound
Length = 1332
Score = 293 bits (750), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 242/868 (27%), Positives = 406/868 (46%), Gaps = 83/868 (9%)
Query: 10 TRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSXXXXXXXXXXXXXXXXXSKYNPE 69
T +VF VNG+K + DP TTLL +LR + SKY+
Sbjct: 2 TADELVFFVNGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLSKYDRL 61
Query: 70 LDQLEDFTISSCLTLLCSVNGCLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMC 129
D++ F+ ++CL +C+++ +TT EG+G++KT HP+ +R A H SQCGFCTPG+
Sbjct: 62 QDKIIHFSANACLAPICTLHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGIV 121
Query: 130 MSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIADACKSFAADVDI 189
MS+++ L ++PEP T+ E E A GNLCRCTGYRPI ++FA +
Sbjct: 122 MSMYTLL-----RNQPEP-------TVEEIEDAFQGNLCRCTGYRPILQGFRTFAKNGGC 169
Query: 190 EDLGINSFWAKGESKEVKISRLPPYKHNGEL------CRFPLF----LKKENSSAMLLDV 239
N+ K+ L P N E + P+F L+ ++ L
Sbjct: 170 CGGNGNNPNCCMNQKKDHTVTLSPSLFNPEEFMPLDPTQEPIFPPELLRLKDVPPKQLRF 229
Query: 240 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEH--YDKYIDIRYIPEL 297
+G + I L+ +L+ + +KLV GNT +G + ++ + I +IPEL
Sbjct: 230 EGERVTWIQASTLKELLDL--KAQHPEAKLVVGNTEIGIEMKFKNQLFPMIICPAWIPEL 287
Query: 298 SVIRRDQTGIEIGATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSAS 357
+ + GI GA +S + L E + ++ VF+ + + A + +++ AS
Sbjct: 288 NAVEHGPEGISFGAACALSSVEKTLLEAVAKLPTQKTEVFRGVLEQLRWFAGKQVKSVAS 347
Query: 358 VGGNLVMAQRKHFPSDVATVLLGAGAMVNIMT-GQKCEKLMLEEFL---ERPPLDSRSIL 413
+GGN++ A SD+ V + +G + I++ G + M F + L IL
Sbjct: 348 LGGNIITASPI---SDLNPVFMASGTKLTIVSRGTRRTVPMDHTFFPSYRKTLLGPEEIL 404
Query: 414 LSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRV 473
LS+EIP + F ++ A R + + + P ++V
Sbjct: 405 LSIEIP----------YSREDEFFSAFKQASR-REDDIAKVTCGMRVLFQP----GSMQV 449
Query: 474 NNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRD--SVVPEDGTSIPAYR 531
L +G + I A + + K N +L + L + S+ P+ + +R
Sbjct: 450 KELALCYGGMADR-TISALKTTQKQLSKFWNEKLLQDVCAGLAEELSLSPDAPGGMIEFR 508
Query: 532 SSLAVGFLYEFFGSLTEMKNGISRDWLCG-----YSNNVSLKDSHVQQNHKQFDESKVPT 586
+L + F ++F+ ++ + S+D CG Y++ L N + F E VP
Sbjct: 509 RTLTLSFFFKFYLTVLKKLGKDSKD-KCGKLDPTYTSATLLFQKDPPANIQLFQE--VPN 565
Query: 587 LLSSAEQVVQLSREYYPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLA 646
S + VG P+ AA+QASGEA+Y DDIP N L+ + ST+ A
Sbjct: 566 GQSKEDT----------VGRPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHA 615
Query: 647 RIKGIEF-KSESVPDVVTALLSYKDIPEGGQNIGSKTIFGSEPLFADELTRCAGQPVAFV 705
+IK I+ +++ VP V LS DIP G G +F E +FA + C G + V
Sbjct: 616 KIKSIDVSEAQKVPGFV-CFLSADDIP-GSNETG---LFNDETVFAKDTVTCVGHIIGAV 670
Query: 706 VADSQKNXXXXXXXXXXXYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISKGMN 765
VAD+ ++ YE +L P I+++E+A+ +S + + GD+ KG +
Sbjct: 671 VADTPEHAERAAHVVKVTYE--DL-PAIITIEDAIKNNSFYGSELKIEK---GDLKKGFS 724
Query: 766 EADHRILAAEIKLGSQYYFYMETQTALAVPD-EDNCLVVYSSIQCPESAHATIARCLGIP 824
EAD+ +++ E+ +G Q +FY+ET +A+P E+ + ++ S Q + +A+ LG+P
Sbjct: 725 EADN-VVSGELYIGGQDHFYLETHCTIAIPKGEEGEMELFVSTQNAMKTQSFVAKMLGVP 783
Query: 825 EHNVRVITRRVGGAFGGKAIKAMPVSIS 852
+ + V +R+GG FGGK ++ VS++
Sbjct: 784 VNRILVRVKRMGGGFGGKETRSTLVSVA 811
>pdb|2E3T|A Chain A, Crystal Structure Of Rat Xanthine Oxidoreductase Mutant
(W335a And F336l)
pdb|2E3T|B Chain B, Crystal Structure Of Rat Xanthine Oxidoreductase Mutant
(W335a And F336l)
Length = 1331
Score = 279 bits (714), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 230/866 (26%), Positives = 401/866 (46%), Gaps = 79/866 (9%)
Query: 10 TRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSXXXXXXXXXXXXXXXXXSKYNPE 69
T +VF VNG+K + DP TTLL +LR SKY+
Sbjct: 2 TADELVFFVNGKKVVEKNADPETTLLVYLRRKLGLCGTKLGCGEGGCGACTVMISKYDRL 61
Query: 70 LDQLEDFTISSCLTLLCSVNGCLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMC 129
+++ F++++CL +CS++ +TT EG+GN++ HP+ +R A H SQCGFCTPG+
Sbjct: 62 QNKIVHFSVNACLAPICSLHHVAVTTVEGIGNTQK-LHPVQERIARSHGSQCGFCTPGIV 120
Query: 130 MSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIADACKSFAADVDI 189
MS+++ L ++PEP T+ E E A GNLCRCTGYRPI ++FA D
Sbjct: 121 MSMYTLL-----RNQPEP-------TVEEIENAFQGNLCRCTGYRPILQGFRTFAKDGGC 168
Query: 190 EDLGI---NSFWAKGESKEVKIS-------RLPPYKHNGELCRFPLFLKKENSSAMLLDV 239
N + + + V +S P E P L+ +++ L
Sbjct: 169 CGGSGNNPNCCMNQTKDQTVSLSPSLFNPEDFKPLDPTQEPIFPPELLRLKDTPQKKLRF 228
Query: 240 KG---SWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEH--YDKYIDIRYI 294
+G +W +++EL ++ + +KLV GNT +G + ++ + + +I
Sbjct: 229 EGERVTWIQASTMEELLDL-----KAQHPDAKLVVGNTEIGIEMKFKNMLFPLIVCPAWI 283
Query: 295 PELSVIRRDQTGIEIGATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRN 354
PEL+ + GI GA+ +S L EE + + VF+ + + +A + +++
Sbjct: 284 PELNSVVHGPEGISFGASCPLSLVESVLAEEIAKLPEQKTEVFRGVMEQLRALAGKQVKS 343
Query: 355 SASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMT-GQKCEKLMLEEFL---ERPPLDSR 410
AS+GGN++ A SD+ V + +GA + +++ G + M F + L
Sbjct: 344 VASIGGNIITASPI---SDLNPVFMASGAKLTLVSRGTRRTVRMDHTFFPGYRKTLLRPE 400
Query: 411 SILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDG 470
ILLS+EIP + F ++ A R + + + + P
Sbjct: 401 EILLSIEIP----------YSKEGEFFSAFKQASR-REDDIAKVTSGMRVLFKP----GT 445
Query: 471 IRVNNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRD--SVVPEDGTSIP 528
I V L FG + I A + K N +L L + + P+ +
Sbjct: 446 IEVQELSLCFGGMADR-TISALKTTPKQLSKSWNEELLQSVCAGLAEELQLAPDAPGGMV 504
Query: 529 AYRSSLAVGFLYEFFGSLTEMKNGISRDWLCGYSNNVSLKDSHVQQNHKQFDESKVPTLL 588
+R +L + F ++F+ ++ + + +CG + + + Q P +
Sbjct: 505 EFRRTLTLSFFFKFYLTVLQKLGRADLEDMCGKLDPTFASATLLFQKDP-------PANV 557
Query: 589 SSAEQVVQLSREYYPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARI 648
++V + E VG P+ A +QASGEA+Y DDIP N L + ST+ A+I
Sbjct: 558 QLFQEVPKDQSEEDMVGRPLPHLAANMQASGEAVYCDDIPRYENELSLRLVTSTRAHAKI 617
Query: 649 KGIEF-KSESVPDVVTALLSYKDIPEGGQNIGSKTIFGSEPLFADELTRCAGQPVAFVVA 707
I+ +++ VP V L+ +D+P N + +F E +FA + C G + VVA
Sbjct: 618 TSIDTSEAKKVPGFV-CFLTAEDVP----NSNATGLFNDETVFAKDEVTCVGHIIGAVVA 672
Query: 708 DSQKNXXXXXXXXXXXYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISKGMNEA 767
D+ ++ YE +L P I+++++A++ +S + + GD+ KG +EA
Sbjct: 673 DTPEHAQRAARGVKITYE--DL-PAIITIQDAINNNSFYGSEIKIEK---GDLKKGFSEA 726
Query: 768 DHRILAAEIKLGSQYYFYMETQTALAVPD-EDNCLVVYSSIQCPESAHATIARCLGIPEH 826
D+ +++ E+ +G Q +FY+ET +AVP E + ++ S Q + +A+ LG+P++
Sbjct: 727 DN-VVSGELYIGGQEHFYLETNCTIAVPKGEAGEMELFVSTQNTMKTQSFVAKMLGVPDN 785
Query: 827 NVRVITRRVGGAFGGKAIKAMPVSIS 852
+ V +R+GG FGGK ++ VS +
Sbjct: 786 RIVVRVKRMGGGFGGKETRSTVVSTA 811
>pdb|3AN1|A Chain A, Crystal Structure Of Rat D428a Mutant, Urate Bound Form
pdb|3AN1|B Chain B, Crystal Structure Of Rat D428a Mutant, Urate Bound Form
Length = 1331
Score = 278 bits (711), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 230/866 (26%), Positives = 400/866 (46%), Gaps = 79/866 (9%)
Query: 10 TRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSXXXXXXXXXXXXXXXXXSKYNPE 69
T +VF VNG+K + DP TTLL +LR SKY+
Sbjct: 2 TADELVFFVNGKKVVEKNADPETTLLVYLRRKLGLCGTKLGCGEGGCGACTVMISKYDRL 61
Query: 70 LDQLEDFTISSCLTLLCSVNGCLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMC 129
+++ F++++CL +CS++ +TT EG+GN++ HP+ +R A H SQCGFCTPG+
Sbjct: 62 QNKIVHFSVNACLAPICSLHHVAVTTVEGIGNTQK-LHPVQERIARSHGSQCGFCTPGIV 120
Query: 130 MSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIADACKSFAADVDI 189
MS+++ L ++PEP T+ E E A GNLCRCTGYRPI ++FA D
Sbjct: 121 MSMYTLL-----RNQPEP-------TVEEIENAFQGNLCRCTGYRPILQGFRTFAKDGGC 168
Query: 190 EDLGI---NSFWAKGESKEVKIS-------RLPPYKHNGELCRFPLFLKKENSSAMLLDV 239
N + + + V +S P E P L+ +++ L
Sbjct: 169 CGGSGNNPNCCMNQTKDQTVSLSPSLFNPEDFKPLDPTQEPIFPPELLRLKDTPQKKLRF 228
Query: 240 KG---SWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEH--YDKYIDIRYI 294
+G +W +++EL ++ + +KLV GNT +G + ++ + + +I
Sbjct: 229 EGERVTWIQASTMEELLDL-----KAQHPDAKLVVGNTEIGIEMKFKNMLFPLIVCPAWI 283
Query: 295 PELSVIRRDQTGIEIGATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRN 354
PEL+ + GI GA+ +S L EE + + VF+ + + A + +++
Sbjct: 284 PELNSVVHGPEGISFGASCPLSLVESVLAEEIAKLPEQKTEVFRGVMEQLRWFAGKQVKS 343
Query: 355 SASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMT-GQKCEKLMLEEFL---ERPPLDSR 410
AS+GGN++ A SD+ V + +GA + +++ G + M F + L
Sbjct: 344 VASIGGNIITASPI---SDLNPVFMASGAKLTLVSRGTRRTVRMDHTFFPGYRKTLLRPE 400
Query: 411 SILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDG 470
ILLS+EIP + F ++ A R + + + + P
Sbjct: 401 EILLSIEIP----------YSKEGEFFSAFKQASRREAD-IAKVTSGMRVLFKP----GT 445
Query: 471 IRVNNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRD--SVVPEDGTSIP 528
I V L FG + I A + K N +L L + + P+ +
Sbjct: 446 IEVQELSLCFGGMADR-TISALKTTPKQLSKSWNEELLQSVCAGLAEELQLAPDAPGGMV 504
Query: 529 AYRSSLAVGFLYEFFGSLTEMKNGISRDWLCGYSNNVSLKDSHVQQNHKQFDESKVPTLL 588
+R +L + F ++F+ ++ + + +CG + + + Q P +
Sbjct: 505 EFRRTLTLSFFFKFYLTVLQKLGRADLEDMCGKLDPTFASATLLFQKDP-------PANV 557
Query: 589 SSAEQVVQLSREYYPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARI 648
++V + E VG P+ A +QASGEA+Y DDIP N L + ST+ A+I
Sbjct: 558 QLFQEVPKDQSEEDMVGRPLPHLAANMQASGEAVYCDDIPRYENELSLRLVTSTRAHAKI 617
Query: 649 KGIEF-KSESVPDVVTALLSYKDIPEGGQNIGSKTIFGSEPLFADELTRCAGQPVAFVVA 707
I+ +++ VP V L+ +D+P N + +F E +FA + C G + VVA
Sbjct: 618 TSIDTSEAKKVPGFV-CFLTAEDVP----NSNATGLFNDETVFAKDEVTCVGHIIGAVVA 672
Query: 708 DSQKNXXXXXXXXXXXYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISKGMNEA 767
D+ ++ YE +L P I+++++A++ +S + + GD+ KG +EA
Sbjct: 673 DTPEHAQRAARGVKITYE--DL-PAIITIQDAINNNSFYGSEIKIEK---GDLKKGFSEA 726
Query: 768 DHRILAAEIKLGSQYYFYMETQTALAVPD-EDNCLVVYSSIQCPESAHATIARCLGIPEH 826
D+ +++ E+ +G Q +FY+ET +AVP E + ++ S Q + +A+ LG+P++
Sbjct: 727 DN-VVSGELYIGGQEHFYLETNCTIAVPKGEAGEMELFVSTQNTMKTQSFVAKMLGVPDN 785
Query: 827 NVRVITRRVGGAFGGKAIKAMPVSIS 852
+ V +R+GG FGGK ++ VS +
Sbjct: 786 RIVVRVKRMGGGFGGKETRSTVVSTA 811
>pdb|2E1Q|A Chain A, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|B Chain B, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|C Chain C, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|D Chain D, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
Length = 1333
Score = 278 bits (710), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 235/863 (27%), Positives = 396/863 (45%), Gaps = 72/863 (8%)
Query: 10 TRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSXXXXXXXXXXXXXXXXXSKYNPE 69
T +VF VNG K + DP TTLL +LR SKY+
Sbjct: 2 TADKLVFFVNGRKVVEKNADPETTLLAYLRRKLGLSGTKLGCGEGGCGACTVMLSKYDRL 61
Query: 70 LDQLEDFTISSCLTLLCSVNGCLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMC 129
+++ F+ ++CL +CS++ +TT EG+G++KT HP+ +R A H SQCGFCTPG+
Sbjct: 62 QNKIVHFSANACLAPICSLHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGIV 121
Query: 130 MSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIADACKSFAADVDI 189
MS+++ L ++PEP T+ E E A GNLCRCTGYRPI ++FA D
Sbjct: 122 MSMYTLL-----RNQPEP-------TMEEIENAFQGNLCRCTGYRPILQGFRTFARDGGC 169
Query: 190 EDLGI---NSFWAKGESKEVKIS-------RLPPYKHNGELCRFPLFLKKENSSAMLLDV 239
N + + V +S P E P L+ +++ L
Sbjct: 170 CGGDGNNPNCCMNQKKDHSVSLSPSLFKPEEFTPLDPTQEPIFPPELLRLKDTPRKQLRF 229
Query: 240 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEH--YDKYIDIRYIPEL 297
+G + I L+ +L+ + +KLV GNT +G + ++ + + +IPEL
Sbjct: 230 EGERVTWIQASTLKELLDL--KAQHPDAKLVVGNTEIGIEMKFKNMLFPMIVCPAWIPEL 287
Query: 298 SVIRRDQTGIEIGATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSAS 357
+ + GI GA +S + L + + ++ VF+ + + A + +++ AS
Sbjct: 288 NSVEHGPDGISFGAACPLSIVEKTLVDAVAKLPAQKTEVFRGVLEQLRWFAGKQVKSVAS 347
Query: 358 VGGNLVMAQRKHFPSDVATVLLGAGAMVNIMT-GQKCEKLMLEEFL---ERPPLDSRSIL 413
VGGN++ A SD+ V + +GA + +++ G + M F + L IL
Sbjct: 348 VGGNIITASPI---SDLNPVFMASGAKLTLVSRGTRRTVQMDHTFFPGYRKTLLSPEEIL 404
Query: 414 LSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRV 473
LS+EIP + F ++ A R + + + + P T V
Sbjct: 405 LSIEIP----------YSREGEYFSAFKQASR-REDDIAKVTSGMRVLFKPGTT----EV 449
Query: 474 NNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSV-VPEDGT-SIPAYR 531
L +G + I A + + K+ +L + L + + +P D + +R
Sbjct: 450 QELALCYGGMANR-TISALKTTQRQLSKLWKEELLQDVCAGLAEELHLPPDAPGGMVDFR 508
Query: 532 SSLAVGFLYEFFGSLTEMKNGISRDWLCGYSNNVSLKDSHVQQNHKQFDESKVPTLLSSA 591
+L + F ++F+ ++ + + + CG + + + Q P +
Sbjct: 509 CTLTLSFFFKFYLTVLQKLGQENLEDKCGKLDPTFASATLLFQKDP-------PADVQLF 561
Query: 592 EQVVQLSREYYPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGI 651
++V + E VG P+ A +QASGEA+Y DDIP N L + ST+ A+IK I
Sbjct: 562 QEVPKGQSEEDMVGRPLPHLAADMQASGEAVYCDDIPRYENELSLRLVTSTRAHAKIKSI 621
Query: 652 EF-KSESVPDVVTALLSYKDIPEGGQNIGSKTIFGSEPLFADELTRCAGQPVAFVVADSQ 710
+ +++ VP V +S D+P G NI I E +FA + C G + VVAD+
Sbjct: 622 DTSEAKKVPGFV-CFISADDVP--GSNITG--ICNDETVFAKDKVTCVGHIIGAVVADTP 676
Query: 711 KNXXXXXXXXXXXYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISKGMNEADHR 770
++ YE P I+++E+A+ +S + P K GD+ KG +EAD+
Sbjct: 677 EHTQRAAQGVKITYEE---LPAIITIEDAIKNNSFYG-PELKIEK--GDLKKGFSEADN- 729
Query: 771 ILAAEIKLGSQYYFYMETQTALAVPD-EDNCLVVYSSIQCPESAHATIARCLGIPEHNVR 829
+++ EI +G Q +FY+ET +AVP E + ++ S Q + +A+ LG+P + +
Sbjct: 730 VVSGEIYIGGQEHFYLETHCTIAVPKGEAGEMELFVSTQNTMKTQSFVAKMLGVPANRIV 789
Query: 830 VITRRVGGAFGGKAIKAMPVSIS 852
V +R+GG FGGK ++ VS +
Sbjct: 790 VRVKRMGGGFGGKVTRSTVVSTA 812
>pdb|2CKJ|A Chain A, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|B Chain B, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|C Chain C, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|D Chain D, Human Milk Xanthine Oxidoreductase
Length = 1333
Score = 277 bits (709), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 235/863 (27%), Positives = 396/863 (45%), Gaps = 72/863 (8%)
Query: 10 TRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSXXXXXXXXXXXXXXXXXSKYNPE 69
T +VF VNG K + DP TTLL +LR SKY+
Sbjct: 2 TADKLVFFVNGRKVVEKNADPETTLLAYLRRKLGLSGTKLGCGEGGCGACTVMLSKYDRL 61
Query: 70 LDQLEDFTISSCLTLLCSVNGCLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMC 129
+++ F+ ++CL +CS++ +TT EG+G++KT HP+ +R A H SQCGFCTPG+
Sbjct: 62 QNKIVHFSANACLAPICSLHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGIV 121
Query: 130 MSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIADACKSFAADVDI 189
MS+++ L ++PEP T+ E E A GNLCRCTGYRPI ++FA D
Sbjct: 122 MSMYTLL-----RNQPEP-------TMEEIENAFQGNLCRCTGYRPILQGFRTFARDGGC 169
Query: 190 EDLGI---NSFWAKGESKEVKIS-------RLPPYKHNGELCRFPLFLKKENSSAMLLDV 239
N + + V +S P E P L+ +++ L
Sbjct: 170 CGGDGNNPNCCMNQKKDHSVSLSPSLFKPEEFTPLDPTQEPIFPPELLRLKDTPRKQLRF 229
Query: 240 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEH--YDKYIDIRYIPEL 297
+G + I L+ +L+ + +KLV GNT +G + ++ + + +IPEL
Sbjct: 230 EGERVTWIQASTLKELLDL--KAQHPDAKLVVGNTEIGIEMKFKNMLFPMIVCPAWIPEL 287
Query: 298 SVIRRDQTGIEIGATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSAS 357
+ + GI GA +S + L + + ++ VF+ + + A + +++ AS
Sbjct: 288 NSVEHGPDGISFGAACPLSIVEKTLVDAVAKLPAQKTEVFRGVLEQLRWFAGKQVKSVAS 347
Query: 358 VGGNLVMAQRKHFPSDVATVLLGAGAMVNIMT-GQKCEKLMLEEFL---ERPPLDSRSIL 413
VGGN++ A SD+ V + +GA + +++ G + M F + L IL
Sbjct: 348 VGGNIITASPI---SDLNPVFMASGAKLTLVSRGTRRTVQMDHTFFPGYRKTLLSPEEIL 404
Query: 414 LSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRV 473
LS+EIP + F ++ A R + + + + P T V
Sbjct: 405 LSIEIP----------YSREGEYFSAFKQASR-REDDIAKVTSGMRVLFKPGTT----EV 449
Query: 474 NNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSV-VPEDGT-SIPAYR 531
L +G + I A + + K+ +L + L + + +P D + +R
Sbjct: 450 QELALCYGGMANR-TISALKTTQRQLSKLWKEELLQDVCAGLAEELHLPPDAPGGMVDFR 508
Query: 532 SSLAVGFLYEFFGSLTEMKNGISRDWLCGYSNNVSLKDSHVQQNHKQFDESKVPTLLSSA 591
+L + F ++F+ ++ + + + CG + + + Q P +
Sbjct: 509 CTLTLSFFFKFYLTVLQKLGQENLEDKCGKLDPTFASATLLFQKDP-------PADVQLF 561
Query: 592 EQVVQLSREYYPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGI 651
++V + E VG P+ A +QASGEA+Y DDIP N L + ST+ A+IK I
Sbjct: 562 QEVPKGQSEEDMVGRPLPHLAADMQASGEAVYCDDIPRYENELSLRLVTSTRAHAKIKSI 621
Query: 652 EF-KSESVPDVVTALLSYKDIPEGGQNIGSKTIFGSEPLFADELTRCAGQPVAFVVADSQ 710
+ +++ VP V +S D+P G NI I E +FA + C G + VVAD+
Sbjct: 622 DTSEAKKVPGFV-CFISADDVP--GSNITG--ICNDETVFAKDKVTCVGHIIGAVVADTP 676
Query: 711 KNXXXXXXXXXXXYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISKGMNEADHR 770
++ YE P I+++E+A+ +S + P K GD+ KG +EAD+
Sbjct: 677 EHTQRAAQGVKITYEE---LPAIITIEDAIKNNSFYG-PELKIEK--GDLKKGFSEADN- 729
Query: 771 ILAAEIKLGSQYYFYMETQTALAVPD-EDNCLVVYSSIQCPESAHATIARCLGIPEHNVR 829
+++ EI +G Q +FY+ET +AVP E + ++ S Q + +A+ LG+P + +
Sbjct: 730 VVSGEIYIGGQEHFYLETHCTIAVPKGEAGEMELFVSTQNTMKTQSFVAKMLGVPANRIV 789
Query: 830 VITRRVGGAFGGKAIKAMPVSIS 852
V +R+GG FGGK ++ VS +
Sbjct: 790 VRVKRMGGGFGGKETRSTVVSTA 812
>pdb|1WYG|A Chain A, Crystal Structure Of A Rat Xanthine Dehydrogenase Triple
Mutant (C535a, C992r And C1324s)
Length = 1331
Score = 275 bits (702), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 229/866 (26%), Positives = 399/866 (46%), Gaps = 79/866 (9%)
Query: 10 TRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSXXXXXXXXXXXXXXXXXSKYNPE 69
T +VF VNG+K + DP TTLL +LR SKY+
Sbjct: 2 TADELVFFVNGKKVVEKNADPETTLLVYLRRKLGLCGTKLGCGEGGCGACTVMISKYDRL 61
Query: 70 LDQLEDFTISSCLTLLCSVNGCLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMC 129
+++ F++++CL +CS++ +TT EG+GN++ HP+ +R A H SQCGFCTPG+
Sbjct: 62 QNKIVHFSVNACLAPICSLHHVAVTTVEGIGNTQK-LHPVQERIARSHGSQCGFCTPGIV 120
Query: 130 MSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIADACKSFAADVDI 189
MS+++ L ++PEP T+ E E A GNLCRCTGYRPI ++FA D
Sbjct: 121 MSMYTLL-----RNQPEP-------TVEEIENAFQGNLCRCTGYRPILQGFRTFAKDGGC 168
Query: 190 EDLGI---NSFWAKGESKEVKIS-------RLPPYKHNGELCRFPLFLKKENSSAMLLDV 239
N + + + V +S P E P L+ +++ L
Sbjct: 169 CGGSGNNPNCCMNQTKDQTVSLSPSLFNPEDFKPLDPTQEPIFPPELLRLKDTPQKKLRF 228
Query: 240 KG---SWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEH--YDKYIDIRYI 294
+G +W +++EL ++ + +KLV GNT +G + ++ + + +I
Sbjct: 229 EGERVTWIQASTMEELLDL-----KAQHPDAKLVVGNTEIGIEMKFKNMLFPLIVCPAWI 283
Query: 295 PELSVIRRDQTGIEIGATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRN 354
PEL+ + GI GA+ +S L EE + + VF+ + + A + +++
Sbjct: 284 PELNSVVHGPEGISFGASCPLSLVESVLAEEIAKLPEQKTEVFRGVMEQLRWFAGKQVKS 343
Query: 355 SASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMT-GQKCEKLMLEEFL---ERPPLDSR 410
AS+GGN++ A SD+ V + +GA + +++ G + M F + L
Sbjct: 344 VASIGGNIITASPI---SDLNPVFMASGAKLTLVSRGTRRTVRMDHTFFPGYRKTLLRPE 400
Query: 411 SILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDG 470
ILLS+EIP + F ++ A R + + + + P
Sbjct: 401 EILLSIEIP----------YSKEGEFFSAFKQASR-REDDIAKVTSGMRVLFKP----GT 445
Query: 471 IRVNNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRD--SVVPEDGTSIP 528
I V L FG + I A + K N +L L + + P+ +
Sbjct: 446 IEVQELSLCFGGMADR-TISALKTTPKQLSKSWNEELLQSVCAGLAEELQLAPDAPGGMV 504
Query: 529 AYRSSLAVGFLYEFFGSLTEMKNGISRDWLCGYSNNVSLKDSHVQQNHKQFDESKVPTLL 588
+R +L + F ++F+ ++ + + + G + + + Q P +
Sbjct: 505 EFRRTLTLSFFFKFYLTVLQKLGRADLEDMAGKLDPTFASATLLFQKDP-------PANV 557
Query: 589 SSAEQVVQLSREYYPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARI 648
++V + E VG P+ A +QASGEA+Y DDIP N L + ST+ A+I
Sbjct: 558 QLFQEVPKDQSEEDMVGRPLPHLAANMQASGEAVYCDDIPRYENELSLRLVTSTRAHAKI 617
Query: 649 KGIEF-KSESVPDVVTALLSYKDIPEGGQNIGSKTIFGSEPLFADELTRCAGQPVAFVVA 707
I+ +++ VP V L+ +D+P N + +F E +FA + C G + VVA
Sbjct: 618 TSIDTSEAKKVPGFV-CFLTAEDVP----NSNATGLFNDETVFAKDEVTCVGHIIGAVVA 672
Query: 708 DSQKNXXXXXXXXXXXYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISKGMNEA 767
D+ ++ YE +L P I+++++A++ +S + + GD+ KG +EA
Sbjct: 673 DTPEHAQRAARGVKITYE--DL-PAIITIQDAINNNSFYGSEIKIEK---GDLKKGFSEA 726
Query: 768 DHRILAAEIKLGSQYYFYMETQTALAVPD-EDNCLVVYSSIQCPESAHATIARCLGIPEH 826
D+ +++ E+ +G Q +FY+ET +AVP E + ++ S Q + +A+ LG+P++
Sbjct: 727 DN-VVSGELYIGGQEHFYLETNCTIAVPKGEAGEMELFVSTQNTMKTQSFVAKMLGVPDN 785
Query: 827 NVRVITRRVGGAFGGKAIKAMPVSIS 852
+ V +R+GG FGGK ++ VS +
Sbjct: 786 RIVVRVKRMGGGFGGKETRSTVVSTA 811
>pdb|3ZYV|A Chain A, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|B Chain B, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|C Chain C, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|D Chain D, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
Length = 1335
Score = 274 bits (701), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 241/868 (27%), Positives = 402/868 (46%), Gaps = 104/868 (11%)
Query: 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSXXXXXXXXXXXXXXXXXSKYNPELDQL 73
++F VNG+K + DP LL +LR R S+Y+P ++
Sbjct: 10 LIFFVNGKKVTERNADPEVNLLFYLRKVIRLTGTKYGCGGGDCGACTVMISRYDPISKRI 69
Query: 74 EDFTISSCLTLLCSVNGCLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLF 133
F+ ++CL +CS++G +TT EG+G++KT HP+ +R A H +QCGFCTPGM MS++
Sbjct: 70 SHFSATACLVPICSLHGAAVTTVEGIGSTKTRIHPVQERIAKGHGTQCGFCTPGMVMSIY 129
Query: 134 SALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIADACKSFAADVDIEDLG 193
+ L + PEP + + + + GNLCRCTGYRPI ++ KSF +
Sbjct: 130 TLL-----RNHPEP-------STEQIMETLGGNLCRCTGYRPIVESAKSFCPSSTCCQMN 177
Query: 194 ------INSFWAKGESKEVKISRL------PPYKHNGELCRFPLFLK-KENSSAMLLDVK 240
++ + E K ++L P EL P ++ E S +L +
Sbjct: 178 GEGKCCLDEEKNEPERKNSVCTKLYEKKEFQPLDPTQELIFPPELMRMAEESQNTVLTFR 237
Query: 241 GSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRY------- 293
G + I+ L ++LE S+ LV GNT +G + K+ D+ Y
Sbjct: 238 GERTTWIAPGTLNDLLEL--KMKHPSAPLVIGNTYLGLHM------KFTDVSYPIIISPA 289
Query: 294 -IPELSVIRRDQTGIEIGATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFI 352
I EL V+ + G+ +G +++++ L + E ++ + ++ +A + I
Sbjct: 290 RILELFVVTNTKQGLTLGTGLSLTQVKNVLSDVVSRLPKEKTQIYCALLKQLKTLAGQQI 349
Query: 353 RNSASVGGNLVMAQRKHFPSDVATVLLGAG-AMVNIMTGQKCEKLML-EEFLERPP---L 407
RN AS+GG+++ P+ +LG G ++N+ + + +++ L + FL P L
Sbjct: 350 RNVASLGGHII----SRLPTSDLNPILGIGNCILNVASTEGIQQIPLNDHFLAGVPDAIL 405
Query: 408 DSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKT 467
+L+SV +P ++ +R APR NA +NA
Sbjct: 406 KPEQVLISVFVP----------RSSKWEFVSAFRQAPRQ-QNAFATVNAGMKVVFKE--- 451
Query: 468 GDGIRVNNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRD--SVVPEDGT 525
D + + + +G G I A + L G+ + +L +A K++ + S++
Sbjct: 452 -DTNTITDLGILYGGIGAT-VISADKSCRQLIGRCWDEEMLDDAGKMICEEVSLLMAAPG 509
Query: 526 SIPAYRSSLAVGFLYEFFGSLTEMKNGISRDWLCGYSNNVSLKDSHVQQNHKQFDESKVP 585
+ YR +LA+ FL+ F+ L +K +RD ++S K H+ ++ +P
Sbjct: 510 GMEEYRKTLAISFLFMFY--LDVLKQLKTRD--PHKYPDISQKLLHILEDFPL----TMP 561
Query: 586 TLLSSAEQVVQLSREYYPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPL 645
+ S + V P+G PI A+GEA++ DD+ L+ A + S+K
Sbjct: 562 YGMQSFQDVDFQQPLQDPIGRPIMHQSGIKHATGEAVFCDDMSVLPGELFLAVVTSSKSH 621
Query: 646 ARIKGIE----FKSESVPDVVTALLSYKDIPEGGQNIGSKTIFGSEPLFADELTRCAGQP 701
A+I ++ S V DVVTA +D+P G N G + E L+A + C GQ
Sbjct: 622 AKIISLDASEALASLGVVDVVTA----RDVP--GDN-GRE----EESLYAQDEVICVGQI 670
Query: 702 VAFVVADSQKNXXXXXXXXXXXYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPK---PVG 758
V V ADS + Y+ ++EP I++V++A+ + SF+ P+ G
Sbjct: 671 VCAVAADSYAHAQQAAKKVKIVYQ--DIEPMIVTVQDAL------QYESFIGPERKLEQG 722
Query: 759 DISKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPD-EDNCLVVYSSIQCPESAHATI 817
++ + AD +IL E+ LG Q +FYMETQ+ VP ED + +Y S Q +
Sbjct: 723 NVEEAFQCAD-QILEGEVHLGGQEHFYMETQSVRVVPKGEDKEMDIYVSSQDAAFTQEMV 781
Query: 818 ARCLGIPEHNVRVITRRVGGAFGGKAIK 845
AR LGIP++ + +RVGGAFGGKA K
Sbjct: 782 ARTLGIPKNRINCHVKRVGGAFGGKASK 809
>pdb|3SR6|C Chain C, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
pdb|3SR6|L Chain L, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
Length = 745
Score = 133 bits (334), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 140/251 (55%), Gaps = 14/251 (5%)
Query: 604 VGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEF-KSESVPDVV 662
VG P+ AA+QASGEA+Y DDIP N L+ + ST+ A+IK I+ +++ VP V
Sbjct: 3 VGRPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPGFV 62
Query: 663 TALLSYKDIPEGGQNIGSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNXXXXXXXXXX 722
LS DIP G G +F E +FA + C G + VVAD+ ++
Sbjct: 63 -CFLSADDIP-GSNETG---LFNDETVFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKV 117
Query: 723 XYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISKGMNEADHRILAAEIKLGSQY 782
YE +L P I+++E+A+ +S + + GD+ KG +EAD+ +++ E+ +G Q
Sbjct: 118 TYE--DL-PAIITIEDAIKNNSFYGSELKIEK---GDLKKGFSEADN-VVSGELYIGGQD 170
Query: 783 YFYMETQTALAVPD-EDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGG 841
+FY+ET +A+P E+ + ++ S Q + +A+ LG+P + + V +R+GG FGG
Sbjct: 171 HFYLETHCTIAIPKGEEGEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGG 230
Query: 842 KAIKAMPVSIS 852
K ++ VS++
Sbjct: 231 KETRSTLVSVA 241
>pdb|1FIQ|A Chain A, Crystal Structure Of Xanthine Oxidase From Bovine Milk
pdb|3B9J|A Chain A, Structure Of Xanthine Oxidase With
2-Hydroxy-6-Methylpurine
pdb|3B9J|I Chain I, Structure Of Xanthine Oxidase With
2-Hydroxy-6-Methylpurine
Length = 219
Score = 133 bits (334), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 98/175 (56%), Gaps = 12/175 (6%)
Query: 10 TRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSXXXXXXXXXXXXXXXXXSKYNPE 69
T +VF VNG+K + DP TTLL +LR + SKY+
Sbjct: 2 TADELVFFVNGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLSKYDRL 61
Query: 70 LDQLEDFTISSCLTLLCSVNGCLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMC 129
D++ F+ ++CL +C+++ +TT EG+G++KT HP+ +R A H SQCGFCTPG+
Sbjct: 62 QDKIIHFSANACLAPICTLHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGIV 121
Query: 130 MSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIADACKSFA 184
MS+++ L + +PEP T+ E E A GNLCRCTGYRPI ++FA
Sbjct: 122 MSMYTLLRN-----QPEP-------TVEEIEDAFQGNLCRCTGYRPILQGFRTFA 164
>pdb|3EUB|A Chain A, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|J Chain J, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|S Chain S, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|2 Chain 2, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
Length = 165
Score = 132 bits (333), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 98/175 (56%), Gaps = 12/175 (6%)
Query: 10 TRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSXXXXXXXXXXXXXXXXXSKYNPE 69
T +VF VNG+K + DP TTLL +LR + SKY+
Sbjct: 2 TADELVFFVNGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLSKYDRL 61
Query: 70 LDQLEDFTISSCLTLLCSVNGCLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMC 129
D++ F+ ++CL +C+++ +TT EG+G++KT HP+ +R A H SQCGFCTPG+
Sbjct: 62 QDKIIHFSANACLAPICTLHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGIV 121
Query: 130 MSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIADACKSFA 184
MS+++ L + +PEP T+ E E A GNLCRCTGYRPI ++FA
Sbjct: 122 MSMYTLLRN-----QPEP-------TVEEIEDAFQGNLCRCTGYRPILQGFRTFA 164
>pdb|1FIQ|C Chain C, Crystal Structure Of Xanthine Oxidase From Bovine Milk
pdb|3B9J|C Chain C, Structure Of Xanthine Oxidase With
2-Hydroxy-6-Methylpurine
pdb|3B9J|K Chain K, Structure Of Xanthine Oxidase With
2-Hydroxy-6-Methylpurine
Length = 763
Score = 132 bits (333), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 140/251 (55%), Gaps = 14/251 (5%)
Query: 604 VGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEF-KSESVPDVV 662
VG P+ AA+QASGEA+Y DDIP N L+ + ST+ A+IK I+ +++ VP V
Sbjct: 4 VGRPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPGFV 63
Query: 663 TALLSYKDIPEGGQNIGSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNXXXXXXXXXX 722
LS DIP G G +F E +FA + C G + VVAD+ ++
Sbjct: 64 -CFLSADDIP-GSNETG---LFNDETVFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKV 118
Query: 723 XYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISKGMNEADHRILAAEIKLGSQY 782
YE +L P I+++E+A+ +S + + GD+ KG +EAD+ +++ E+ +G Q
Sbjct: 119 TYE--DL-PAIITIEDAIKNNSFYGSELKIEK---GDLKKGFSEADN-VVSGELYIGGQD 171
Query: 783 YFYMETQTALAVPD-EDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGG 841
+FY+ET +A+P E+ + ++ S Q + +A+ LG+P + + V +R+GG FGG
Sbjct: 172 HFYLETHCTIAIPKGEEGEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGG 231
Query: 842 KAIKAMPVSIS 852
K ++ VS++
Sbjct: 232 KETRSTLVSVA 242
>pdb|3NRZ|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Hypoxanthine
pdb|3NRZ|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Hypoxanthine
pdb|3NVW|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Guanine
pdb|3NVW|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Guanine
pdb|3NVY|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Quercetin
pdb|3NVY|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Quercetin
Length = 756
Score = 132 bits (333), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 140/251 (55%), Gaps = 14/251 (5%)
Query: 604 VGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEF-KSESVPDVV 662
VG P+ AA+QASGEA+Y DDIP N L+ + ST+ A+IK I+ +++ VP V
Sbjct: 3 VGRPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPGFV 62
Query: 663 TALLSYKDIPEGGQNIGSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNXXXXXXXXXX 722
LS DIP G G +F E +FA + C G + VVAD+ ++
Sbjct: 63 -CFLSADDIP-GSNETG---LFNDETVFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKV 117
Query: 723 XYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISKGMNEADHRILAAEIKLGSQY 782
YE +L P I+++E+A+ +S + + GD+ KG +EAD+ +++ E+ +G Q
Sbjct: 118 TYE--DL-PAIITIEDAIKNNSFYGSELKIEK---GDLKKGFSEADN-VVSGELYIGGQD 170
Query: 783 YFYMETQTALAVPD-EDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGG 841
+FY+ET +A+P E+ + ++ S Q + +A+ LG+P + + V +R+GG FGG
Sbjct: 171 HFYLETHCTIAIPKGEEGEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGG 230
Query: 842 KAIKAMPVSIS 852
K ++ VS++
Sbjct: 231 KETRSTLVSVA 241
>pdb|3EUB|C Chain C, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|L Chain L, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|U Chain U, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|4 Chain 4, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
Length = 762
Score = 132 bits (333), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 140/251 (55%), Gaps = 14/251 (5%)
Query: 604 VGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEF-KSESVPDVV 662
VG P+ AA+QASGEA+Y DDIP N L+ + ST+ A+IK I+ +++ VP V
Sbjct: 3 VGRPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPGFV 62
Query: 663 TALLSYKDIPEGGQNIGSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNXXXXXXXXXX 722
LS DIP G G +F E +FA + C G + VVAD+ ++
Sbjct: 63 -CFLSADDIP-GSNETG---LFNDETVFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKV 117
Query: 723 XYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISKGMNEADHRILAAEIKLGSQY 782
YE +L P I+++E+A+ +S + + GD+ KG +EAD+ +++ E+ +G Q
Sbjct: 118 TYE--DL-PAIITIEDAIKNNSFYGSELKIEK---GDLKKGFSEADN-VVSGELYIGGQD 170
Query: 783 YFYMETQTALAVPD-EDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGG 841
+FY+ET +A+P E+ + ++ S Q + +A+ LG+P + + V +R+GG FGG
Sbjct: 171 HFYLETHCTIAIPKGEEGEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGG 230
Query: 842 KAIKAMPVSIS 852
K ++ VS++
Sbjct: 231 KETRSTLVSVA 241
>pdb|3ETR|C Chain C, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3ETR|N Chain N, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3NS1|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With 6- Mercaptopurine
pdb|3NS1|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With 6- Mercaptopurine
pdb|3NVV|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Arsenite
pdb|3NVV|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Arsenite
pdb|3NVZ|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Indole-3- Aldehyde
pdb|3NVZ|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Indole-3- Aldehyde
Length = 755
Score = 132 bits (333), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 140/251 (55%), Gaps = 14/251 (5%)
Query: 604 VGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEF-KSESVPDVV 662
VG P+ AA+QASGEA+Y DDIP N L+ + ST+ A+IK I+ +++ VP V
Sbjct: 3 VGRPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPGFV 62
Query: 663 TALLSYKDIPEGGQNIGSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNXXXXXXXXXX 722
LS DIP G G +F E +FA + C G + VVAD+ ++
Sbjct: 63 -CFLSADDIP-GSNETG---LFNDETVFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKV 117
Query: 723 XYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISKGMNEADHRILAAEIKLGSQY 782
YE +L P I+++E+A+ +S + + GD+ KG +EAD+ +++ E+ +G Q
Sbjct: 118 TYE--DL-PAIITIEDAIKNNSFYGSELKIEK---GDLKKGFSEADN-VVSGELYIGGQD 170
Query: 783 YFYMETQTALAVPD-EDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGG 841
+FY+ET +A+P E+ + ++ S Q + +A+ LG+P + + V +R+GG FGG
Sbjct: 171 HFYLETHCTIAIPKGEEGEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGG 230
Query: 842 KAIKAMPVSIS 852
K ++ VS++
Sbjct: 231 KETRSTLVSVA 241
>pdb|3ETR|A Chain A, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3ETR|L Chain L, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3NRZ|A Chain A, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Hypoxanthine
pdb|3NRZ|J Chain J, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Hypoxanthine
pdb|3NS1|A Chain A, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With 6- Mercaptopurine
pdb|3NS1|J Chain J, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With 6- Mercaptopurine
pdb|3NVV|A Chain A, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Arsenite
pdb|3NVV|J Chain J, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Arsenite
pdb|3NVW|A Chain A, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Guanine
pdb|3NVW|J Chain J, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Guanine
pdb|3NVY|A Chain A, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Quercetin
pdb|3NVY|J Chain J, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Quercetin
pdb|3NVZ|A Chain A, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Indole-3- Aldehyde
pdb|3NVZ|J Chain J, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Indole-3- Aldehyde
pdb|3SR6|A Chain A, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
pdb|3SR6|J Chain J, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
Length = 164
Score = 132 bits (333), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 98/175 (56%), Gaps = 12/175 (6%)
Query: 10 TRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSXXXXXXXXXXXXXXXXXSKYNPE 69
T +VF VNG+K + DP TTLL +LR + SKY+
Sbjct: 1 TADELVFFVNGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLSKYDRL 60
Query: 70 LDQLEDFTISSCLTLLCSVNGCLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMC 129
D++ F+ ++CL +C+++ +TT EG+G++KT HP+ +R A H SQCGFCTPG+
Sbjct: 61 QDKIIHFSANACLAPICTLHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGIV 120
Query: 130 MSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIADACKSFA 184
MS+++ L + +PEP T+ E E A GNLCRCTGYRPI ++FA
Sbjct: 121 MSMYTLLRN-----QPEP-------TVEEIEDAFQGNLCRCTGYRPILQGFRTFA 163
>pdb|2W55|B Chain B, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|D Chain D, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|F Chain F, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|H Chain H, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
Length = 777
Score = 99.0 bits (245), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 111/232 (47%), Gaps = 10/232 (4%)
Query: 604 VGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVT 663
VG+P+ A +G+A Y+DD+P P N L+ AF ST+ A I G++ + V
Sbjct: 3 VGKPLPHDSARAHVTGQARYLDDLPCPANTLHLAFGLSTEASAAITGLDLEPVRESPGVI 62
Query: 664 ALLSYKDIPEGGQNIGSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNXXXXXXXXXXX 723
A+ + D+P + + EP+ A GQP+ V A S +
Sbjct: 63 AVFTAADLPHDNDASPAPS---PEPVLATGEVHFVGQPIFLVAATSHRAARIAARKARIT 119
Query: 724 YEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISKGMNEADHRILAAEIKLGSQYY 783
Y P IL++++A+ S FE ++ + GD+ + A H + ++G Q +
Sbjct: 120 YAP---RPAILTLDQALAADSRFEGGPVIWAR--GDVETALAGAAH-LAEGCFEIGGQEH 173
Query: 784 FYMETQTALAVPDEDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRV 835
FY+E Q ALA+P E +V++ S Q P +A LG+ H+VRV RR+
Sbjct: 174 FYLEGQAALALPAEGG-VVIHCSSQHPSEIQHKVAHALGLAFHDVRVEMRRM 224
>pdb|1JRO|B Chain B, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|D Chain D, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|F Chain F, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|H Chain H, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRP|B Chain B, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|D Chain D, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|F Chain F, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|H Chain H, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|2W3R|B Chain B, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|D Chain D, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|F Chain F, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|H Chain H, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3S|B Chain B, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|D Chain D, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|F Chain F, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|H Chain H, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W54|B Chain B, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|D Chain D, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|F Chain F, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|H Chain H, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
Length = 777
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 111/232 (47%), Gaps = 10/232 (4%)
Query: 604 VGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVT 663
VG+P+ A +G+A Y+DD+P P N L+ AF ST+ A I G++ + V
Sbjct: 3 VGKPLPHDSARAHVTGQARYLDDLPCPANTLHLAFGLSTEASAAITGLDLEPVRESPGVI 62
Query: 664 ALLSYKDIPEGGQNIGSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNXXXXXXXXXXX 723
A+ + D+P + + EP+ A GQP+ V A S +
Sbjct: 63 AVFTAADLPHDNDASPAPS---PEPVLATGEVHFVGQPIFLVAATSHRAARIAARKARIT 119
Query: 724 YEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISKGMNEADHRILAAEIKLGSQYY 783
Y P IL++++A+ S FE ++ + GD+ + A H + ++G Q +
Sbjct: 120 YAP---RPAILTLDQALAADSRFEGGPVIWAR--GDVETALAGAAH-LAEGCFEIGGQEH 173
Query: 784 FYMETQTALAVPDEDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRV 835
FY+E Q ALA+P E +V++ S Q P +A LG+ H+VRV RR+
Sbjct: 174 FYLEGQAALALPAEGG-VVIHCSSQHPSEIQHKVAHALGLAFHDVRVEMRRM 224
>pdb|2W3R|A Chain A, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|C Chain C, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|E Chain E, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|G Chain G, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3S|A Chain A, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|C Chain C, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|E Chain E, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|G Chain G, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W54|A Chain A, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|C Chain C, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|E Chain E, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|G Chain G, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W55|A Chain A, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|C Chain C, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|E Chain E, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|G Chain G, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
Length = 462
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 131/549 (23%), Positives = 210/549 (38%), Gaps = 117/549 (21%)
Query: 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSXXXXXXXXXXXXXXXXXSKYNPELDQL 73
+ F +NGE V DP+ +LLE+LR + D
Sbjct: 3 IAFLLNGETRRVRIEDPTQSLLEWLRAEGLTGTKEGCNEGDCGACTVMIR-------DAA 55
Query: 74 EDFTISSCLTLLCSVNGCLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLF 133
+++CL +L + G + T EG+ HP+ Q H SQCGFCTPG +S+
Sbjct: 56 GSRAVNACLMMLPQIAGKALRTIEGIAAPDGRLHPVQQAMIDHHGSQCGFCTPGFIVSMA 115
Query: 134 SALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIADACKSFAADVDIEDLG 193
+A K + + +AGNLCRCTGY PI A ++ A + + L
Sbjct: 116 AAHDRDRKDY----------------DDLLAGNLCRCTGYAPILRAAEAAAGEPPADWLQ 159
Query: 194 INSFWAKGE-SKEVKISRLPPYKHNGELCRFPLFLKKENSSAMLLDVKGSWHSPISVQEL 252
++ + + S V+ G+ P FL + + D W+
Sbjct: 160 ADAAFTLAQLSSGVR----------GQTA--PAFLPETS------DALADWY-------- 193
Query: 253 RNVLESVEGSNQISSKLVAGNTGMGYY--KEVEHYDKYIDIRYIPELSVIRRDQTGIEIG 310
L E + L+AG T + + K + + + + +L+ IR G IG
Sbjct: 194 ---LAHPEAT------LIAGGTDVSLWVTKALRDLPEVAFLSHCKDLAQIRETPDGYGIG 244
Query: 311 ATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHF 370
A VTI+ A+ A E +AG + + AS +R A++GGN+
Sbjct: 245 AGVTIA-ALRAFAEGPH----------PALAGLLRRFASEQVRQVATIGGNIANGSPI-- 291
Query: 371 PSDVATVLLGAGAMVNIMTGQKCEKLMLEE-FLERPPLDSR--SILLSVEIP-------C 420
D L+ GA + + GQ+ ++ LE+ FLE D R + SV +P C
Sbjct: 292 -GDGPPALIAMGASLTLRRGQERRRMPLEDFFLEYRKQDRRPGEFVESVTLPKSAPGLRC 350
Query: 421 WDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAF 480
+ L++ + ++V LN T G ++ R+AF
Sbjct: 351 YKLSKRFDQDISAV----------------CGCLNL----------TLKGSKIETARIAF 384
Query: 481 GAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVP-EDGTSIPAYR----SSLA 535
G RA E L G+ + A+ LL P D + AYR ++A
Sbjct: 385 GGMAGVPK-RAAAFEAALIGQDFREDTIAAALPLLAQDFTPLSDMRASAAYRMNAAQAMA 443
Query: 536 VGFLYEFFG 544
+ ++ E G
Sbjct: 444 LRYVRELSG 452
>pdb|1JRO|A Chain A, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|C Chain C, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|E Chain E, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|G Chain G, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRP|A Chain A, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|C Chain C, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|E Chain E, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|G Chain G, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
Length = 462
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 131/549 (23%), Positives = 209/549 (38%), Gaps = 117/549 (21%)
Query: 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSXXXXXXXXXXXXXXXXXSKYNPELDQL 73
+ F +NGE V DP+ +LLE LR + D
Sbjct: 3 IAFLLNGETRRVRIEDPTQSLLELLRAEGLTGTKEGCNEGDCGACTVMIR-------DAA 55
Query: 74 EDFTISSCLTLLCSVNGCLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLF 133
+++CL +L + G + T EG+ HP+ Q H SQCGFCTPG +S+
Sbjct: 56 GSRAVNACLMMLPQIAGKALRTIEGIAAPDGRLHPVQQAMIDHHGSQCGFCTPGFIVSMA 115
Query: 134 SALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIADACKSFAADVDIEDLG 193
+A K + + +AGNLCRCTGY PI A ++ A + + L
Sbjct: 116 AAHDRDRKDY----------------DDLLAGNLCRCTGYAPILRAAEAAAGEPPADWLQ 159
Query: 194 INSFWAKGE-SKEVKISRLPPYKHNGELCRFPLFLKKENSSAMLLDVKGSWHSPISVQEL 252
++ + + S V+ G+ P FL + + D W+
Sbjct: 160 ADAAFTLAQLSSGVR----------GQTA--PAFLPETS------DALADWY-------- 193
Query: 253 RNVLESVEGSNQISSKLVAGNTGMGYY--KEVEHYDKYIDIRYIPELSVIRRDQTGIEIG 310
L E + L+AG T + + K + + + + +L+ IR G IG
Sbjct: 194 ---LAHPEAT------LIAGGTDVSLWVTKALRDLPEVAFLSHCKDLAQIRETPDGYGIG 244
Query: 311 ATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHF 370
A VTI+ A+ A E +AG + + AS +R A++GGN+
Sbjct: 245 AGVTIA-ALRAFAEGPH----------PALAGLLRRFASEQVRQVATIGGNIANGSPI-- 291
Query: 371 PSDVATVLLGAGAMVNIMTGQKCEKLMLEE-FLERPPLDSR--SILLSVEIP-------C 420
D L+ GA + + GQ+ ++ LE+ FLE D R + SV +P C
Sbjct: 292 -GDGPPALIAMGASLTLRRGQERRRMPLEDFFLEYRKQDRRPGEFVESVTLPKSAPGLRC 350
Query: 421 WDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAF 480
+ L++ + ++V LN T G ++ R+AF
Sbjct: 351 YKLSKRFDQDISAV----------------CGCLNL----------TLKGSKIETARIAF 384
Query: 481 GAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVP-EDGTSIPAYR----SSLA 535
G RA E L G+ + A+ LL P D + AYR ++A
Sbjct: 385 GGMAGVPK-RAAAFEAALIGQDFREDTIAAALPLLAQDFTPLSDMRASAAYRMNAAQAMA 443
Query: 536 VGFLYEFFG 544
+ ++ E G
Sbjct: 444 LRYVRELSG 452
>pdb|1N5W|A Chain A, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Oxidized Form
pdb|1N5W|D Chain D, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Oxidized Form
pdb|1N60|A Chain A, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Cyanide- Inactivated Form
pdb|1N60|D Chain D, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Cyanide- Inactivated Form
pdb|1N61|A Chain A, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Dithionite Reduced State
pdb|1N61|D Chain D, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Dithionite Reduced State
pdb|1N62|A Chain A, Crystal Structure Of The Mo,cu-co Dehydrogenase (codh), N-
Butylisocyanide-bound State
pdb|1N62|D Chain D, Crystal Structure Of The Mo,cu-co Dehydrogenase (codh), N-
Butylisocyanide-bound State
pdb|1N63|A Chain A, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Carbon Monoxide Reduced State
pdb|1N63|D Chain D, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Carbon Monoxide Reduced State
pdb|1ZXI|A Chain A, Reconstituted Co Dehydrogenase From Oligotropha
Carboxidovorans
pdb|1ZXI|D Chain D, Reconstituted Co Dehydrogenase From Oligotropha
Carboxidovorans
Length = 166
Score = 71.6 bits (174), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/119 (34%), Positives = 55/119 (46%), Gaps = 18/119 (15%)
Query: 73 LEDFTISSCLTLLCSVNGCLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSL 132
L+ ++ SC NG ITT EG+ + + F H QCG+CTPGM M
Sbjct: 54 LDGMSVKSCTMFAVQANGASITTIEGMAAPDGTLSALQEGFRMMHGLQCGYCTPGMIM-- 111
Query: 133 FSALVDAEKTHR---PEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIADACKSFAADVD 188
++HR P P T +E I GNLCRCTGY+ I A + AA ++
Sbjct: 112 --------RSHRLLQENPSP-----TEAEIRFGIGGNLCRCTGYQNIVKAIQYAAAKIN 157
>pdb|1FFU|A Chain A, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava Which Lacks The Mo-Pyranopterin Moiety Of
The Molybdenum Cofactor
pdb|1FFU|D Chain D, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava Which Lacks The Mo-Pyranopterin Moiety Of
The Molybdenum Cofactor
pdb|1FFV|A Chain A, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava
pdb|1FFV|D Chain D, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava
Length = 163
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 69/166 (41%), Gaps = 24/166 (14%)
Query: 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSXXXXXXXXXXXXXXXXXSKYNPELDQL 73
+ VNG K + +V+P T L+ FLR S +
Sbjct: 6 ITVNVNG-KAQEKAVEPRTLLIHFLREELNLTGAHIGCET----------SHCGACTVDI 54
Query: 74 EDFTISSCLTLLCSVNGCLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLF 133
+ ++ SC L +G + T EGL N K H + + F H QCGFCTPGM M +
Sbjct: 55 DGRSVKSCTHLAVQCDGSEVLTVEGLAN-KGVLHAVQEGFYKEHGLQCGFCTPGMLMRAY 113
Query: 134 SALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIADA 179
L + P P T +E + GNLCRCTGY+ I A
Sbjct: 114 RFLQE-----NPNP-------TEAEIRMGMTGNLCRCTGYQNIVKA 147
>pdb|3HRD|A Chain A, Crystal Structure Of Nicotinate Dehydrogenase
pdb|3HRD|E Chain E, Crystal Structure Of Nicotinate Dehydrogenase
Length = 425
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 99/254 (38%), Gaps = 20/254 (7%)
Query: 597 LSREYYPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSE 656
+ ++Y +G+ K + + G A + D P + LY ST P ARI ++
Sbjct: 1 MGKDYQVLGKNKVKVDSLEKVMGTAKFAADYSFP-DMLYAGVFRSTVPHARIVSLDLSKA 59
Query: 657 SVPDVVTALLSYKDIPEGGQNIGSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNXXXX 716
D V A+L Y IP G G I EP D+ R G +A V A +
Sbjct: 60 RAIDGVEAVLDYHAIP-GKNRFG--IIIKDEPCLVDDKVRRYGDAIAVVAAQTPDLVQEA 116
Query: 717 XXXXXXXYEMGNLEPPILSVEEAVDRSS--------LFEVPSFLYPKPVGDISKGMNEAD 768
YE LE I ++E A++ S + +V Y GD+ + D
Sbjct: 117 LDAITIEYE--ELEG-IFTMERALEEDSPAIHGDTNIHQVKHLEY----GDVDAAFKQCD 169
Query: 769 HRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPESAHATIARCLGIPEHNV 828
++ + ++E ++ D + L V S Q P +A L +P V
Sbjct: 170 -IVVEDTYSTHRLTHMFIEPDAGVSYYDNEGMLTVVVSTQNPHYDRGEVAGMLALPNSKV 228
Query: 829 RVITRRVGGAFGGK 842
R+I GG FGGK
Sbjct: 229 RIIQATTGGGFGGK 242
>pdb|1T3Q|A Chain A, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
pdb|1T3Q|D Chain D, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
Length = 168
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 78 ISSCLTLLCSVNGCLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALV 137
+ SCLTL GC I T EGL + + + F HA QCGFCT GM + S L
Sbjct: 65 MRSCLTLAVQAEGCSIETVEGLSQGEK-LNALQDSFRRHHALQCGFCTAGMLATARSILA 123
Query: 138 DAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIADA 179
+ P P + E + ++GNLCRCTGY I DA
Sbjct: 124 E-------NPAP-----SRDEVREVMSGNLCRCTGYETIIDA 153
>pdb|1RM6|C Chain C, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1RM6|F Chain F, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1SB3|C Chain C, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1SB3|F Chain F, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
Length = 161
Score = 62.4 bits (150), Expect = 9e-10, Method: Composition-based stats.
Identities = 41/109 (37%), Positives = 54/109 (49%), Gaps = 19/109 (17%)
Query: 80 SCLTLLCSVNGCLITTSEGLGNSKTGFHPIHQRFAGFH---ASQCGFCTPGMCMSLFSAL 136
+C TL V G + T E L T + + A FH +QCGFCTPGM M+
Sbjct: 60 ACSTLAHQVAGKKVETVESLATQGT----LSKLQAAFHEKLGTQCGFCTPGMIMA----- 110
Query: 137 VDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIADACKSFAA 185
+E R P P + E + A+AGNLCRCTGY I + ++ AA
Sbjct: 111 --SEALLRKNPSP-----SRDEIKAALAGNLCRCTGYVKIIKSVETAAA 152
>pdb|1FIQ|B Chain B, Crystal Structure Of Xanthine Oxidase From Bovine Milk
Length = 350
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/353 (21%), Positives = 147/353 (41%), Gaps = 38/353 (10%)
Query: 242 SWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEH--YDKYIDIRYIPELSV 299
+W +++EL ++ + +KLV GNT +G + ++ + I +IPEL+
Sbjct: 16 TWIQASTLKELLDL-----KAQHPEAKLVVGNTEIGIEMKFKNQLFPMIICPAWIPELNA 70
Query: 300 IRRDQTGIEIGATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVG 359
+ GI GA +S + L E + ++ VF+ + + A + +++ AS+G
Sbjct: 71 VEHGPEGISFGAACALSSVEKTLLEAVAKLPTQKTEVFRGVLEQLRWFAGKQVKSVASLG 130
Query: 360 GNLVMAQRKHFPSDVATVLLGAGAMVNIMT-GQKCEKLMLEEFL---ERPPLDSRSILLS 415
GN++ A SD+ V + +G + I++ G + M F + L ILLS
Sbjct: 131 GNIITASPI---SDLNPVFMASGTKLTIVSRGTRRTVPMDHTFFPSYRKTLLGPEEILLS 187
Query: 416 VEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNN 475
+EIP + F ++ A R + + + P ++V
Sbjct: 188 IEIPY----------SREDEFFSAFKQASR-REDDIAKVTCGMRVLFQP----GSMQVKE 232
Query: 476 CRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRD--SVVPEDGTSIPAYRSS 533
L +G + I A + + K N +L + L + S+ P+ + +R +
Sbjct: 233 LALCYGGMADR-TISALKTTQKQLSKFWNEKLLQDVCAGLAEELSLSPDAPGGMIEFRRT 291
Query: 534 LAVGFLYEFFGSLTEMKNGISRDWLCG-----YSNNVSLKDSHVQQNHKQFDE 581
L + F ++F+ ++ + S+D CG Y++ L H N + F E
Sbjct: 292 LTLSFFFKFYLTVLKKLGKDSKD-KCGKLDPTYTSATLLFQKHPPANIQLFQE 343
>pdb|3B9J|B Chain B, Structure Of Xanthine Oxidase With
2-Hydroxy-6-Methylpurine
pdb|3B9J|J Chain J, Structure Of Xanthine Oxidase With
2-Hydroxy-6-Methylpurine
Length = 350
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 70/327 (21%), Positives = 138/327 (42%), Gaps = 33/327 (10%)
Query: 242 SWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEH--YDKYIDIRYIPELSV 299
+W +++EL ++ + +KLV GNT +G + ++ + I +IPEL+
Sbjct: 16 TWIQASTLKELLDL-----KAQHPEAKLVVGNTEIGIEMKFKNQLFPMIICPAWIPELNA 70
Query: 300 IRRDQTGIEIGATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVG 359
+ GI GA +S + L E + ++ VF+ + + A + +++ AS+G
Sbjct: 71 VEHGPEGISFGAACALSSVEKTLLEAVAKLPTQKTEVFRGVLEQLRWFAGKQVKSVASLG 130
Query: 360 GNLVMAQRKHFPSDVATVLLGAGAMVNIMT-GQKCEKLMLEEFL---ERPPLDSRSILLS 415
GN++ A SD+ V + +G + I++ G + M F + L ILLS
Sbjct: 131 GNIITASPI---SDLNPVFMASGTKLTIVSRGTRRTVPMDHTFFPSYRKTLLGPEEILLS 187
Query: 416 VEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNN 475
+EIP + F ++ A R + + + P ++V
Sbjct: 188 IEIPY----------SREDEFFSAFKQASR-REDDIAKVTCGMRVLFQP----GSMQVKE 232
Query: 476 CRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRD--SVVPEDGTSIPAYRSS 533
L +G + I A + + K N +L + L + S+ P+ + +R +
Sbjct: 233 LALCYGGMADR-TISALKTTQKQLSKFWNEKLLQDVCAGLAEELSLSPDAPGGMIEFRRT 291
Query: 534 LAVGFLYEFFGSLTEMKNGISRDWLCG 560
L + F ++F+ ++ + S+D CG
Sbjct: 292 LTLSFFFKFYLTVLKKLGKDSKD-KCG 317
>pdb|3NVV|B Chain B, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Arsenite
pdb|3NVV|K Chain K, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Arsenite
pdb|3NVW|B Chain B, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Guanine
pdb|3NVW|K Chain K, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Guanine
pdb|3NVY|B Chain B, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Quercetin
pdb|3NVY|K Chain K, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Quercetin
Length = 334
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 87/184 (47%), Gaps = 14/184 (7%)
Query: 242 SWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEH--YDKYIDIRYIPELSV 299
+W +++EL ++ + +KLV GNT +G + ++ + I +IPEL+
Sbjct: 41 TWIQASTLKELLDL-----KAQHPEAKLVVGNTEIGIEMKFKNQLFPMIICPAWIPELNA 95
Query: 300 IRRDQTGIEIGATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVG 359
+ GI GA +S + L E + ++ VF+ + + A + +++ AS+G
Sbjct: 96 VEHGPEGISFGAACALSSVEKTLLEAVAKLPTQKTEVFRGVLEQLRWFAGKQVKSVASLG 155
Query: 360 GNLVMAQRKHFPSDVATVLLGAGAMVNIMT-GQKCEKLMLEEFL---ERPPLDSRSILLS 415
GN++ A SD+ V + +G + I++ G + M F + L ILLS
Sbjct: 156 GNIITASPI---SDLNPVFMASGTKLTIVSRGTRRTVPMDHTFFPSYRKTLLGPEEILLS 212
Query: 416 VEIP 419
+EIP
Sbjct: 213 IEIP 216
>pdb|1SIJ|A Chain A, Crystal Structure Of The Aldehyde Dehydrogenase (A.K.A.
Aor Or Mop) Of Desulfovibrio Gigas Covalently Bound To
[aso3]-
pdb|1VLB|A Chain A, Structure Refinement Of The Aldehyde Oxidoreductase From
Desulfovibrio Gigas At 1.28 A
pdb|3FAH|A Chain A, Glycerol Inhibited Form Of Aldehyde Oxidoreductase From
Desulfovibrio Gigas
pdb|3FC4|A Chain A, Ethylene Glycol Inhibited Form Of Aldehyde Oxidoreductase
From Desulfovibrio Gigas
pdb|3L4P|A Chain A, Crystal Structure Of The Aldehyde Dehydrogenase (A.K.A.
Aor Or Mop) Of Desulfovibrio Gigas Covalently Bound To
[aso3]-
Length = 907
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 12/117 (10%)
Query: 73 LEDFTISSCLTLLCSV-NGCLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMS 131
L+ + +C+T + V +G ITT EG+G + HP+ + + +QCGFC+PG +S
Sbjct: 52 LDGKVVRACVTKMKRVADGAQITTIEGVGQPEN-LHPLQKAWVLHGGAQCGFCSPGFIVS 110
Query: 132 LFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIADACKSFAADVD 188
L R + K N CRCTGY+P+ DA AA ++
Sbjct: 111 AKGLLDTNADPSREDVRDWFQKHR----------NACRCTGYKPLVDAVMDAAAVIN 157
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 89/226 (39%), Gaps = 18/226 (7%)
Query: 630 PINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNIGSKTIFGS--- 686
P L+ A + + A IKGI+ V +++++KD+ +G I F +
Sbjct: 204 PAGTLHLAMVQAKVSHANIKGIDTSEALTMPGVHSVITHKDV-KGKNRITGLITFPTNKG 262
Query: 687 ----EPLFADELTRCAGQPVAFVVADSQKNXXXXXXXXXXXYEMGNLEPPILSVEEAVDR 742
P+ DE G +A V ADS+ N E P +S A
Sbjct: 263 DGWDRPILCDEKVFQYGDCIALVCADSEANARAAAEKVKVDLEE---LPAYMSGPAAAAE 319
Query: 743 SSLFE---VPSFLYPKPV--GDISKGMNEADHRILAAEIKLGSQYYFYMETQTALA-VPD 796
++ P+ + +P+ G+ + + + + + +G Q + +E A A + D
Sbjct: 320 DAIEIHPGTPNVYFEQPIVKGEDTGPIFASADVTVEGDFYVGRQPHMPIEPDVAFAYMGD 379
Query: 797 EDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGGK 842
+ C + SI + IA +G+ + ++ +GG FG K
Sbjct: 380 DGKCYIHSKSIGVHLHLY-MIAPGVGLEPDQLVLVANPMGGTFGYK 424
>pdb|3ETR|B Chain B, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3ETR|M Chain M, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3EUB|B Chain B, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|K Chain K, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|T Chain T, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|3 Chain 3, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3NRZ|B Chain B, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Hypoxanthine
pdb|3NRZ|K Chain K, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Hypoxanthine
pdb|3NS1|B Chain B, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With 6- Mercaptopurine
pdb|3NS1|K Chain K, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With 6- Mercaptopurine
pdb|3NVZ|B Chain B, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Indole-3- Aldehyde
pdb|3NVZ|K Chain K, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Indole-3- Aldehyde
pdb|3SR6|B Chain B, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
pdb|3SR6|K Chain K, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
Length = 305
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 87/184 (47%), Gaps = 14/184 (7%)
Query: 242 SWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEH--YDKYIDIRYIPELSV 299
+W +++EL ++ + +KLV GNT +G + ++ + I +IPEL+
Sbjct: 12 TWIQASTLKELLDL-----KAQHPEAKLVVGNTEIGIEMKFKNQLFPMIICPAWIPELNA 66
Query: 300 IRRDQTGIEIGATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVG 359
+ GI GA +S + L E + ++ VF+ + + A + +++ AS+G
Sbjct: 67 VEHGPEGISFGAACALSSVEKTLLEAVAKLPTQKTEVFRGVLEQLRWFAGKQVKSVASLG 126
Query: 360 GNLVMAQRKHFPSDVATVLLGAGAMVNIMT-GQKCEKLMLEEFL---ERPPLDSRSILLS 415
GN++ A SD+ V + +G + I++ G + M F + L ILLS
Sbjct: 127 GNIITASPI---SDLNPVFMASGTKLTIVSRGTRRTVPMDHTFFPSYRKTLLGPEEILLS 183
Query: 416 VEIP 419
+EIP
Sbjct: 184 IEIP 187
>pdb|1DGJ|A Chain A, Crystal Structure Of The Aldehyde Oxidoreductase From
Desulfovibrio Desulfuricans Atcc 27774
Length = 907
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
Query: 73 LEDFTISSCLTLLCSV-NGCLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMS 131
L+ + +C+ + V +TT EG+G HP+ + A+QCGFCTPG +S
Sbjct: 52 LDGKVVRACIIKMSRVAENASVTTLEGIGAPDC-LHPLQHAWIQHGAAQCGFCTPGFIVS 110
Query: 132 LFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIADACKSFAA 185
+ L + R + K N+CRCTGY+P+ DA AA
Sbjct: 111 AKALLDENVAPSREDVRDWFQKHH----------NICRCTGYKPLVDAVMDAAA 154
>pdb|1N5W|B Chain B, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Oxidized Form
pdb|1N5W|E Chain E, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Oxidized Form
pdb|1N60|B Chain B, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Cyanide- Inactivated Form
pdb|1N60|E Chain E, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Cyanide- Inactivated Form
pdb|1N61|B Chain B, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Dithionite Reduced State
pdb|1N61|E Chain E, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Dithionite Reduced State
pdb|1N62|B Chain B, Crystal Structure Of The Mo,cu-co Dehydrogenase (codh), N-
Butylisocyanide-bound State
pdb|1N62|E Chain E, Crystal Structure Of The Mo,cu-co Dehydrogenase (codh), N-
Butylisocyanide-bound State
pdb|1N63|B Chain B, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Carbon Monoxide Reduced State
pdb|1N63|E Chain E, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Carbon Monoxide Reduced State
Length = 809
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 104/246 (42%), Gaps = 29/246 (11%)
Query: 619 GEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEF-KSESVPDVVTALLSYKDIPEGGQN 677
G+ YVDD+ P L+G F+ S+ ARIK I+ K++++P V A+L+ D+ +
Sbjct: 36 GKGNYVDDVKLP-GMLFGDFVRSSHAHARIKSIDTSKAKALPGVF-AVLTAADLKPLNLH 93
Query: 678 IGSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNXXXXXXXXXXXYE--------MGNL 729
+ + ADE Q VAFVVA + YE +
Sbjct: 94 YMPTLAGDVQAVLADEKVLFQNQEVAFVVAKDRYVAADAIELVEVDYEPLPVLVDPFKAM 153
Query: 730 EP--PILSVEEAVDRSS----LFEVPSFLYPKPVGDISKGMNEADHRILAAEIKLGSQYY 783
EP P+L E+ D+ + + + ++ +GD D AE+ +
Sbjct: 154 EPDAPLLR-EDIKDKMTGAHGARKHHNHIFRWEIGD----KEGTDATFAKAEVVSKDMFT 208
Query: 784 FY------METQTALAVPDE-DNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVG 836
++ +ET +A D+ L ++ + Q P ++ G+PEH + VI +G
Sbjct: 209 YHRVHPSPLETCQCVASMDKIKGELTLWGTFQAPHVIRTVVSLISGLPEHKIHVIAPDIG 268
Query: 837 GAFGGK 842
G FG K
Sbjct: 269 GGFGNK 274
>pdb|1ZXI|B Chain B, Reconstituted Co Dehydrogenase From Oligotropha
Carboxidovorans
pdb|1ZXI|E Chain E, Reconstituted Co Dehydrogenase From Oligotropha
Carboxidovorans
Length = 809
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 104/246 (42%), Gaps = 29/246 (11%)
Query: 619 GEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEF-KSESVPDVVTALLSYKDIPEGGQN 677
G+ YVDD+ P L+G F+ S+ ARIK I+ K++++P V A+L+ D+ +
Sbjct: 36 GKGNYVDDVKLP-GMLFGDFVRSSHAHARIKSIDTSKAKALPGVF-AVLTAADLKPLNLH 93
Query: 678 IGSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNXXXXXXXXXXXYE--------MGNL 729
+ + ADE Q VAFVVA + YE +
Sbjct: 94 YMPTLAGDVQAVLADEKVLFQNQEVAFVVAKDRYVAADAIELVEVDYEPLPVLVDPFKAM 153
Query: 730 EP--PILSVEEAVDRSS----LFEVPSFLYPKPVGDISKGMNEADHRILAAEIKLGSQYY 783
EP P+L E+ D+ + + + ++ +GD D AE+ +
Sbjct: 154 EPDAPLLR-EDIKDKMTGAHGARKHHNHIFRWEIGD----KEGTDATFAKAEVVSKDMFT 208
Query: 784 FY------METQTALAVPDE-DNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVG 836
++ +ET +A D+ L ++ + Q P ++ G+PEH + VI +G
Sbjct: 209 YHRVHPSPLETCQCVASMDKIKGELTLWGTFQAPHVIRTVVSLISGLPEHKIHVIAPDIG 268
Query: 837 GAFGGK 842
G FG K
Sbjct: 269 GGFGNK 274
>pdb|3HRD|D Chain D, Crystal Structure Of Nicotinate Dehydrogenase
pdb|3HRD|H Chain H, Crystal Structure Of Nicotinate Dehydrogenase
Length = 160
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 37/105 (35%), Positives = 52/105 (49%), Gaps = 15/105 (14%)
Query: 78 ISSCLTLLCSVNGCLITTSEGLG-NSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSAL 136
+++C L + I T EG+ + K + Q F A QCG+CTPGM ++ AL
Sbjct: 59 VTTCCMLAGQADESTIITLEGVAEDGKPSL--LQQCFLEAGAVQCGYCTPGMILTA-KAL 115
Query: 137 VDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIADACK 181
+D P+P T E A++GNLCRCTGY I A +
Sbjct: 116 LDKN----PDP-------TDEEITVAMSGNLCRCTGYIKIHAAVR 149
>pdb|1RM6|A Chain A, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1RM6|D Chain D, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1SB3|A Chain A, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1SB3|D Chain D, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
Length = 769
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 94/236 (39%), Gaps = 19/236 (8%)
Query: 616 QASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGG 675
+ +G+A Y DI +P + L G + S ARI I+ + + V A+ + + P
Sbjct: 23 KVTGKAKYTADIAAP-DALVGRILRSPHAHARILAIDTSAAEALEGVIAVCTGAETP--- 78
Query: 676 QNIGSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNXXXXXXXXXXXYEM--------G 727
G I +E A + R G PVA V A + YE+
Sbjct: 79 VPFGVLPIAENEYPLARDKVRYRGDPVAAVAAIDEVTAEKALALIKVDYEVLPAYMTPKA 138
Query: 728 NLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISKGMNEADHRILAAEIKLGSQYYFYME 787
++ +++ + + L EV + GD++ EAD I + +ME
Sbjct: 139 AMKAGAIALHDDKPNNILREVHAEF-----GDVAAAFAEAD-LIREKTYTFAEVNHVHME 192
Query: 788 TQTALAVPDE-DNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGGK 842
LA D + L + ++ Q P H +A CL + +RVI +GG FG +
Sbjct: 193 LNATLAEYDPVRDMLTLNTTTQVPYYVHLKVAACLQMDSARIRVIKPFLGGGFGAR 248
>pdb|1T3Q|B Chain B, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
pdb|1T3Q|E Chain E, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
Length = 788
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 95/240 (39%), Gaps = 22/240 (9%)
Query: 618 SGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQN 677
+G Y+ D+ L+ A + S ARI I+ V + D+ E Q
Sbjct: 28 TGRGRYIADLVLS-GMLHVASLRSPFAHARIVSIDVADAQALPGVELVWCGADVAELSQG 86
Query: 678 I-------GSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNXXXXXXXXXXXYEMGNLE 730
I G +T +PL A+ +TR G+ VA VVA S+ YE
Sbjct: 87 IVATMQVEGFQTTI--QPLLANGVTRFVGEIVAVVVASSRAIAEDAAQLIQVEYEE---L 141
Query: 731 PPILSVEEAVDRSSLFEVPSFLYPKPVGDISKGMNE------ADHRILAAEIKLGSQYYF 784
P + +E A++ + L V S+ +E + ++ + G
Sbjct: 142 PAVTGIEAALEGEA--RANDTLAGNVVSRTSRARDELAPIFASSAGVVRGQFSCGRVSAC 199
Query: 785 YMETQTALAVPD-EDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGGKA 843
MET+ A+A + L+++++ Q P +A IPEH + V VGG FG KA
Sbjct: 200 PMETRGAVAQYEWTTQQLILWTATQMPSFVRTMVAMFCAIPEHLIEVRVPDVGGGFGQKA 259
>pdb|1T3Q|C Chain C, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
pdb|1T3Q|F Chain F, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
Length = 288
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 118/273 (43%), Gaps = 53/273 (19%)
Query: 242 SWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMG--YYKEVEHYDKYIDIRYIPELSV 299
S+ +P S+QE+ VL ++ ++++AG + + + +D+R + EL
Sbjct: 7 SYRAPASLQEVIQVL-----ADDPDARIIAGGQSLLPLLAFRLVYPSCLVDLRNVSELFE 61
Query: 300 IRRDQTGIEIGATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVG 359
I + + +GA VT + +T ++ + + K+ H +A + +RN ++G
Sbjct: 62 ISQSAGILSVGAMVT------HFRNKTDPTVAKCVPILPKVLAH---VAHQAVRNRGTLG 112
Query: 360 GNLVMAQR-KHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEEFLER---PPLDSRSILLS 415
G+L A P +AT+ GA + I + + +F++ L++ +L+
Sbjct: 113 GSLAHADAGAEMPFLMATL----GATMYIASSAGVRSVSATDFMKGHYFTDLEAGEVLVR 168
Query: 416 VEIPC----WDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGI 471
VEIP W+ F+ Y R G+ + AA L + G
Sbjct: 169 VEIPIPALHWE--------------FDEY---ARRKGDYALVMAAAGL-------SMQGG 204
Query: 472 RVNNCRLAFGAFGTKHAIRARRVEEFLTGKVLN 504
R R+A GA + A +A R +FL GKV++
Sbjct: 205 RCVAARIALGAV-EERAHQAIRANDFLVGKVID 236
>pdb|1FFU|B Chain B, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava Which Lacks The Mo-Pyranopterin Moiety Of
The Molybdenum Cofactor
pdb|1FFU|E Chain E, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava Which Lacks The Mo-Pyranopterin Moiety Of
The Molybdenum Cofactor
pdb|1FFV|B Chain B, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava
pdb|1FFV|E Chain E, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava
Length = 803
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 96/246 (39%), Gaps = 29/246 (11%)
Query: 619 GEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNI 678
G+ YVDDI P L+ + + RIK I + V A+L+ +D+ +
Sbjct: 33 GKGNYVDDIKMP-GMLHMDIVRAPIAHGRIKKIHKDAALAMPGVHAVLTAEDLKPLKLHW 91
Query: 679 GSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNXXXXXXXXXXXYE--------MGNLE 730
+ ADE Q VA V+AD + Y+ + L+
Sbjct: 92 MPTLAGDVAAVLADEKVHFQMQEVAIVIADDRYIAADAVEAVKVEYDELPVVIDPIDALK 151
Query: 731 P--PILSVEEAVDRSSLFEVP----SFLYPKPVGDISKGMNEADHRILAAEIKLGSQYYF 784
P P+L E+ ++S P + ++ GD K +A + A SQ+ +
Sbjct: 152 PDAPVLR-EDLAGKTSGAHGPREHHNHIFTWGAGD--KAATDA---VFANAPVTVSQHMY 205
Query: 785 Y-------METQTALAVPDE-DNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVG 836
Y +ET +A D L Y + Q P ++ GIPE VR+++ +G
Sbjct: 206 YPRVHPCPLETCGCVASFDPIKGDLTTYITSQAPHVVRTVVSMLSGIPESKVRIVSPDIG 265
Query: 837 GAFGGK 842
G FG K
Sbjct: 266 GGFGNK 271
>pdb|3HRD|C Chain C, Crystal Structure Of Nicotinate Dehydrogenase
pdb|3HRD|G Chain G, Crystal Structure Of Nicotinate Dehydrogenase
Length = 296
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 58/279 (20%), Positives = 110/279 (39%), Gaps = 28/279 (10%)
Query: 243 WHSPISVQELRNVLESVEGSNQISSKLVAGNTGM--GYYKEVEHYDKYIDIRYIPELSVI 300
+ +P +++E + +L + + ++AG T + E D IDI+ + EL I
Sbjct: 6 FFAPKTLEEAKGLLHQYK---DVPPAIIAGGTDLVIEINDRWEKPDVVIDIKKLKELEYI 62
Query: 301 RRDQTGIEIGATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGG 360
R ++ I IGA T ++ E F + K A ++ S IRN ++GG
Sbjct: 63 RVEENTIHIGALSTFTQI------ENHPFIRSHVRALYKAA---SQVGSPQIRNLGTIGG 113
Query: 361 NLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEEFLERPPLDSRSILLSVEIPC 420
NL + D + + A V + + + ++ L +F + R+ L + EI
Sbjct: 114 NLSTSS---VAGDGVSAMTTLDATVVLESVRGTRQMKLTDFFDGEGFKRRNALEADEI-- 168
Query: 421 WDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAF 480
+T + ++ Y+ A R L + + K D +
Sbjct: 169 --MTEVIIDRPDAHSASAFYKLAKR------KSLAISVIGGGMAVKVDDAGVCTWASMRG 220
Query: 481 GAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSV 519
G G ++ + ++ EE L G L + + +L D+V
Sbjct: 221 GCIG-RYPLHFKQAEEMLVGAPLTMETMEATLPILHDTV 258
>pdb|1FFV|C Chain C, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava
pdb|1FFV|F Chain F, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava
Length = 287
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 21/125 (16%)
Query: 243 WHSPISVQELRNVLESVEGSNQISSKLVAGNTGMG-----YYKEVEHYDKYIDIRYIPEL 297
+H+P SV E +L + GS+ +KL+AG + + + EH IDI IPEL
Sbjct: 8 YHAPKSVGEAVALLGQL-GSD---AKLLAGGHSLLPMMKLRFAQPEHL---IDINRIPEL 60
Query: 298 SVIRRDQTGIEIGATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSAS 357
IR + + + IGA + I + + + +A + IA +RN +
Sbjct: 61 RGIREEGSTVVIGAMTVENDLISSPIVQAR---------LPLLAEAAKLIADPQVRNRGT 111
Query: 358 VGGNL 362
+GG++
Sbjct: 112 IGGDI 116
>pdb|1FFU|C Chain C, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava Which Lacks The Mo-Pyranopterin Moiety Of
The Molybdenum Cofactor
pdb|1FFU|F Chain F, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava Which Lacks The Mo-Pyranopterin Moiety Of
The Molybdenum Cofactor
Length = 287
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 21/125 (16%)
Query: 243 WHSPISVQELRNVLESVEGSNQISSKLVAGNTGMG-----YYKEVEHYDKYIDIRYIPEL 297
+H+P SV E +L + GS+ +KL+AG + + + EH IDI IPEL
Sbjct: 8 YHAPKSVGEAVALLGQL-GSD---AKLLAGGHSLLPMMKLRFAQPEHL---IDINRIPEL 60
Query: 298 SVIRRDQTGIEIGATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSAS 357
IR + + + IGA + I + + + +A + IA +RN +
Sbjct: 61 RGIREEGSTVVIGAMTVENDLISSPIVQAR---------LPLLAEAAKLIADPQVRNRGT 111
Query: 358 VGGNL 362
+GG++
Sbjct: 112 IGGDI 116
>pdb|3B8A|X Chain X, Crystal Structure Of Yeast Hexokinase Pi In Complex With
Glucose
Length = 485
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 54/140 (38%), Gaps = 24/140 (17%)
Query: 531 RSSLAVGFLYEFFGSLTEMKNGISRDWLCGYS-NNVSLKDS-HVQQNHKQFDESKVPTLL 588
+ +L +GF + + S ++ GI + W G+ NV D + QN E + +
Sbjct: 148 KDTLPLGFTFSYPASQNKINEGILQRWTKGFDIPNVEGHDVVPLLQNEISKRELPIEIVA 207
Query: 589 SSAEQVVQLSREYYPVGEPITKSGAALQASG---------------EAIYVDDIPS---- 629
+ V L YY +P TK G +G E DDIPS
Sbjct: 208 LINDTVGTLIASYYT--DPETKMGVIF-GTGVNGAFYDVVSDIEKLEGKLADDIPSNSPM 264
Query: 630 PINCLYGAFIYSTKPLARIK 649
INC YG+F L R K
Sbjct: 265 AINCEYGSFDNEHLVLPRTK 284
>pdb|1IG8|A Chain A, Crystal Structure Of Yeast Hexokinase Pii With The Correct
Amino Acid Sequence
Length = 486
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 60/161 (37%), Gaps = 30/161 (18%)
Query: 510 EAIKLLRDSVVPEDGTSIPAYRSSLAVGFLYEFFGSLTEMKNGISRDWLCGYS-NNVSLK 568
+++K D P+ G S P + +GF + F S ++ GI + W G+ N+
Sbjct: 133 DSLKAFIDEQFPQ-GISEP-----IPLGFTFSFPASQNKINEGILQRWTKGFDIPNIENH 186
Query: 569 DSHVQQNHKQFDESKVPTLLSSA--EQVVQLSREYYPVGEPITKSGAALQASGEAIYVD- 625
D V KQ + +P + + + L YY +P TK G Y D
Sbjct: 187 DV-VPMLQKQITKRNIPIEVVALINDTTGTLVASYY--TDPETKMGVIFGTGVNGAYYDV 243
Query: 626 -------------DIPS----PINCLYGAFIYSTKPLARIK 649
DIP INC YG+F L R K
Sbjct: 244 CSDIEKLQGKLSDDIPPSAPMAINCEYGSFDNEHVVLPRTK 284
>pdb|3A0R|A Chain A, Crystal Structure Of Histidine Kinase Thka (Tm1359) In
Complex With Response Regulator Protein Trra (Tm1360)
Length = 349
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 65/153 (42%), Gaps = 19/153 (12%)
Query: 276 MGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEALKEETKEFHSEALM 335
+ +YK ++Y +IR+ P R +T + G +TI E K E + E L
Sbjct: 78 LNFYK---FGERYFNIRFSP----FRNAKTQLLEGVIITIDDVTELYKYEEERKRRERL- 129
Query: 336 VFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCE- 394
I G M + IRN ++ G +M +KH D T+ +NI+T +
Sbjct: 130 ---SILGEMTARVAHEIRNPITIIGGFIMRMKKHL-DDPETL----KKYINIITNELSRL 181
Query: 395 KLMLEEFLERPPLDSRSILLSVEIPCWDLTRNV 427
+ +++E LE R +L E +L R V
Sbjct: 182 ETIVKEILEYSK--ERQVLEFTEFNLNELIREV 212
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,208,463
Number of Sequences: 62578
Number of extensions: 971944
Number of successful extensions: 2157
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1988
Number of HSP's gapped (non-prelim): 73
length of query: 854
length of database: 14,973,337
effective HSP length: 107
effective length of query: 747
effective length of database: 8,277,491
effective search space: 6183285777
effective search space used: 6183285777
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)