Query 003040
Match_columns 854
No_of_seqs 439 out of 3052
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 15:50:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003040.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003040hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00192 aldehyde oxidase 100.0 3E-170 6E-175 1595.5 77.5 821 10-851 2-826 (1344)
2 TIGR02969 mam_aldehyde_ox alde 100.0 5E-165 1E-169 1547.1 72.8 772 13-846 2-806 (1330)
3 KOG0430 Xanthine dehydrogenase 100.0 8E-165 2E-169 1434.8 60.5 766 12-854 1-774 (1257)
4 PLN02906 xanthine dehydrogenas 100.0 5E-162 1E-166 1521.3 72.4 758 31-847 1-802 (1319)
5 COG4630 XdhA Xanthine dehydrog 100.0 9E-114 2E-118 904.5 31.8 467 11-550 6-482 (493)
6 TIGR02963 xanthine_xdhA xanthi 100.0 3E-111 6E-116 963.9 48.9 458 14-545 1-466 (467)
7 PRK09800 putative hypoxanthine 100.0 2E-89 4.4E-94 836.8 39.1 407 12-848 1-454 (956)
8 TIGR03313 Se_sel_red_Mo probab 100.0 3.8E-87 8.2E-92 817.8 37.8 403 16-848 1-450 (951)
9 TIGR03311 Se_dep_Molyb_1 selen 100.0 6.5E-87 1.4E-91 811.1 38.9 399 14-852 1-407 (848)
10 PRK09971 xanthine dehydrogenas 100.0 1.5E-55 3.3E-60 478.6 27.3 274 242-549 6-286 (291)
11 TIGR03193 4hydroxCoAred 4-hydr 100.0 2E-55 4.3E-60 422.3 16.8 147 14-184 2-148 (148)
12 PRK09908 xanthine dehydrogenas 100.0 1.2E-54 2.7E-59 421.0 17.6 151 11-184 6-156 (159)
13 TIGR03198 pucE xanthine dehydr 100.0 1.4E-53 3E-58 413.2 16.3 148 12-184 2-149 (151)
14 COG2080 CoxS Aerobic-type carb 100.0 1.5E-53 3.2E-58 408.2 16.1 152 11-185 1-152 (156)
15 TIGR03195 4hydrxCoA_B 4-hydrox 100.0 3E-52 6.5E-57 453.8 27.7 274 240-547 4-320 (321)
16 TIGR03199 pucC xanthine dehydr 100.0 4.8E-52 1E-56 445.6 25.1 258 246-540 1-263 (264)
17 PRK11433 aldehyde oxidoreducta 100.0 9.2E-52 2E-56 419.3 17.7 161 12-185 50-214 (217)
18 TIGR02965 xanthine_xdhB xanthi 100.0 1E-50 2.2E-55 491.5 22.5 235 604-847 1-235 (758)
19 COG1319 CoxM Aerobic-type carb 100.0 3.5E-50 7.6E-55 427.5 21.7 273 240-549 3-282 (284)
20 TIGR03196 pucD xanthine dehydr 100.0 1.9E-50 4.2E-55 488.6 22.4 240 603-852 2-248 (768)
21 PRK09970 xanthine dehydrogenas 100.0 2.1E-50 4.6E-55 489.2 21.5 239 603-848 2-254 (759)
22 TIGR03194 4hydrxCoA_A 4-hydrox 100.0 3E-49 6.5E-54 477.4 21.4 231 608-846 1-238 (746)
23 PRK09799 putative oxidoreducta 100.0 2.4E-48 5.3E-53 414.5 24.5 250 242-549 4-254 (258)
24 TIGR03312 Se_sel_red_FAD proba 100.0 1.3E-47 2.8E-52 408.4 24.5 251 241-549 2-253 (257)
25 COG4631 XdhB Xanthine dehydrog 100.0 2.6E-48 5.7E-53 423.3 17.2 244 601-854 16-259 (781)
26 TIGR02416 CO_dehy_Mo_lg carbon 100.0 8.8E-48 1.9E-52 466.6 21.1 230 612-848 1-252 (770)
27 PF00941 FAD_binding_5: FAD bi 100.0 1.4E-38 3E-43 320.0 11.7 165 240-421 2-171 (171)
28 COG1529 CoxL Aerobic-type carb 100.0 4.7E-35 1E-39 353.1 20.0 237 602-846 4-242 (731)
29 PF01799 Fer2_2: [2Fe-2S] bind 100.0 3.6E-31 7.7E-36 227.3 6.5 75 95-182 1-75 (75)
30 PF01315 Ald_Xan_dh_C: Aldehyd 99.9 3.3E-28 7.1E-33 227.3 6.4 107 618-729 1-110 (111)
31 PF02738 Ald_Xan_dh_C2: Molybd 99.8 2.8E-19 6.1E-24 211.5 8.1 91 754-845 17-108 (547)
32 PF03450 CO_deh_flav_C: CO deh 99.7 1.8E-17 3.8E-22 153.1 12.5 101 439-546 2-103 (103)
33 PRK12386 fumarate reductase ir 99.2 3.4E-11 7.3E-16 127.8 6.5 69 21-101 20-93 (251)
34 PRK05950 sdhB succinate dehydr 98.7 2.4E-08 5.1E-13 105.8 6.3 69 21-101 18-91 (232)
35 TIGR00384 dhsB succinate dehyd 98.6 4.5E-08 9.7E-13 102.9 5.2 69 21-101 15-87 (220)
36 PRK12576 succinate dehydrogena 98.5 2.4E-07 5.3E-12 100.5 8.8 70 21-101 25-100 (279)
37 PF13085 Fer2_3: 2Fe-2S iron-s 98.4 8.2E-07 1.8E-11 82.6 7.8 70 21-101 19-94 (110)
38 PRK12385 fumarate reductase ir 98.2 1.3E-06 2.9E-11 93.0 4.6 68 21-101 25-96 (244)
39 PF13510 Fer2_4: 2Fe-2S iron-s 98.1 7.2E-06 1.6E-10 72.6 7.4 70 12-96 2-80 (82)
40 cd00207 fer2 2Fe-2S iron-sulfu 98.0 9.2E-06 2E-10 71.6 5.1 69 14-85 1-77 (84)
41 PRK08493 NADH dehydrogenase su 97.9 1.8E-05 3.9E-10 97.1 7.2 97 13-127 1-102 (819)
42 PRK08640 sdhB succinate dehydr 97.9 1.8E-05 3.9E-10 84.6 6.2 68 21-101 23-101 (249)
43 PRK12577 succinate dehydrogena 97.8 0.00017 3.6E-09 80.5 13.3 70 21-101 19-101 (329)
44 PRK13552 frdB fumarate reducta 97.8 1.9E-05 4.1E-10 84.0 5.4 69 21-101 24-96 (239)
45 PRK07570 succinate dehydrogena 97.7 3.3E-05 7.2E-10 82.5 4.9 70 21-100 20-103 (250)
46 PF00111 Fer2: 2Fe-2S iron-sul 97.7 4.8E-05 1E-09 66.3 4.9 47 16-64 1-48 (78)
47 COG0479 FrdB Succinate dehydro 97.7 5E-05 1.1E-09 79.7 5.8 69 21-101 20-92 (234)
48 PRK12575 succinate dehydrogena 97.6 7.9E-05 1.7E-09 79.0 5.8 68 21-101 23-94 (235)
49 PRK12814 putative NADPH-depend 97.5 0.00014 3.1E-09 88.4 7.4 92 13-125 3-101 (652)
50 COG1529 CoxL Aerobic-type carb 97.5 2.3E-06 5E-11 104.7 -8.2 202 595-840 176-387 (731)
51 PLN00129 succinate dehydrogena 97.5 9.5E-05 2.1E-09 79.8 4.9 68 22-101 63-135 (276)
52 PRK07569 bidirectional hydroge 97.4 0.00036 7.8E-09 74.2 8.2 96 13-128 3-107 (234)
53 PRK06259 succinate dehydrogena 97.2 0.00075 1.6E-08 79.4 8.0 64 21-97 21-88 (486)
54 PRK14652 UDP-N-acetylenolpyruv 97.1 0.0022 4.8E-08 70.7 10.1 162 234-422 29-194 (302)
55 PRK14653 UDP-N-acetylenolpyruv 96.9 0.0084 1.8E-07 65.9 12.0 138 234-400 27-165 (297)
56 PF01565 FAD_binding_4: FAD bi 96.8 0.0021 4.7E-08 62.1 6.2 106 242-367 3-109 (139)
57 PRK13905 murB UDP-N-acetylenol 96.6 0.011 2.5E-07 65.1 10.3 162 234-422 24-191 (298)
58 PRK10713 2Fe-2S ferredoxin Yfa 96.5 0.0048 1E-07 54.9 5.8 47 13-63 3-49 (84)
59 TIGR02008 fdx_plant ferredoxin 96.3 0.0078 1.7E-07 55.1 6.0 48 13-63 4-52 (97)
60 CHL00134 petF ferredoxin; Vali 96.3 0.0091 2E-07 54.8 6.4 48 13-63 5-54 (99)
61 COG0277 GlcD FAD/FMN-containin 96.0 0.01 2.2E-07 69.1 6.6 109 240-367 32-140 (459)
62 PRK07860 NADH dehydrogenase su 96.0 0.0097 2.1E-07 74.2 6.8 103 12-130 3-112 (797)
63 TIGR00179 murB UDP-N-acetyleno 95.9 0.056 1.2E-06 59.2 11.4 139 235-400 7-147 (284)
64 PRK14650 UDP-N-acetylenolpyruv 95.9 0.071 1.5E-06 58.7 12.1 88 233-324 25-113 (302)
65 TIGR01676 GLDHase galactonolac 95.9 0.014 3E-07 68.9 6.8 159 240-421 62-226 (541)
66 PRK11230 glycolate oxidase sub 95.9 0.016 3.4E-07 68.5 7.1 108 241-366 57-164 (499)
67 PRK13906 murB UDP-N-acetylenol 95.7 0.062 1.4E-06 59.5 10.8 153 240-420 37-194 (307)
68 PLN03136 Ferredoxin; Provision 95.6 0.024 5.2E-07 55.8 6.1 49 13-64 56-104 (148)
69 PLN02593 adrenodoxin-like ferr 95.5 0.037 7.9E-07 52.5 6.8 81 13-96 2-101 (117)
70 TIGR01973 NuoG NADH-quinone ox 95.5 0.025 5.5E-07 68.4 7.1 92 16-128 1-103 (603)
71 PRK11872 antC anthranilate dio 95.4 0.021 4.5E-07 64.2 5.8 47 14-63 3-52 (340)
72 PRK09129 NADH dehydrogenase su 95.4 0.019 4.1E-07 71.7 5.9 106 13-135 1-112 (776)
73 PRK09130 NADH dehydrogenase su 95.3 0.037 8E-07 67.9 7.9 96 13-128 1-106 (687)
74 TIGR00387 glcD glycolate oxida 95.3 0.018 3.8E-07 66.5 4.9 103 244-366 2-106 (413)
75 PTZ00038 ferredoxin; Provision 95.3 0.042 9.2E-07 56.2 6.7 53 9-64 93-145 (191)
76 PLN02465 L-galactono-1,4-lacto 95.2 0.16 3.5E-06 60.6 12.6 159 240-422 97-262 (573)
77 PRK11183 D-lactate dehydrogena 95.2 0.044 9.6E-07 64.2 7.6 109 241-367 40-153 (564)
78 PRK08166 NADH dehydrogenase su 95.2 0.027 5.9E-07 70.9 6.4 104 13-128 1-110 (847)
79 PTZ00305 NADH:ubiquinone oxido 95.2 0.054 1.2E-06 58.7 7.5 98 10-126 65-171 (297)
80 PTZ00490 Ferredoxin superfamil 95.0 0.077 1.7E-06 52.0 7.5 85 12-98 36-138 (143)
81 TIGR01678 FAD_lactone_ox sugar 95.0 0.06 1.3E-06 62.6 7.8 157 241-421 16-179 (438)
82 TIGR01677 pln_FAD_oxido plant- 95.0 0.17 3.7E-06 60.4 11.7 83 241-324 33-118 (557)
83 TIGR02160 PA_CoA_Oxy5 phenylac 94.9 0.052 1.1E-06 61.1 7.1 53 10-64 261-313 (352)
84 PRK12436 UDP-N-acetylenolpyruv 94.9 0.18 3.8E-06 55.9 11.0 105 240-367 37-141 (305)
85 PLN02805 D-lactate dehydrogena 94.6 0.053 1.2E-06 64.7 6.4 107 241-367 135-241 (555)
86 TIGR01679 bact_FAD_ox FAD-link 94.4 0.082 1.8E-06 61.2 7.2 155 241-422 13-174 (419)
87 PRK00046 murB UDP-N-acetylenol 94.1 0.34 7.3E-06 54.2 10.8 137 234-400 14-158 (334)
88 PRK13903 murB UDP-N-acetylenol 94.1 0.23 5.1E-06 56.1 9.6 85 234-324 26-113 (363)
89 PRK07609 CDP-6-deoxy-delta-3,4 93.9 0.065 1.4E-06 60.0 4.9 47 12-63 3-49 (339)
90 PRK10684 HCP oxidoreductase, N 93.8 0.081 1.8E-06 59.2 5.4 47 14-63 249-295 (332)
91 COG0633 Fdx Ferredoxin [Energy 93.8 0.1 2.2E-06 48.2 5.0 48 15-64 6-53 (102)
92 PRK14649 UDP-N-acetylenolpyruv 93.7 0.32 6.9E-06 53.7 9.6 87 234-324 14-103 (295)
93 TIGR02007 fdx_isc ferredoxin, 93.3 0.13 2.8E-06 48.2 4.9 42 19-65 14-56 (110)
94 TIGR01941 nqrF NADH:ubiquinone 93.1 0.11 2.4E-06 59.7 5.1 49 12-63 30-80 (405)
95 PRK05464 Na(+)-translocating N 92.7 0.13 2.9E-06 59.2 5.0 50 11-63 33-84 (409)
96 PRK14651 UDP-N-acetylenolpyruv 92.3 0.94 2E-05 49.3 10.6 153 234-422 14-169 (273)
97 PRK05713 hypothetical protein; 92.0 0.22 4.7E-06 55.3 5.4 44 15-63 3-46 (312)
98 COG0812 MurB UDP-N-acetylmuram 91.8 1.9 4.1E-05 47.2 12.0 158 235-422 15-182 (291)
99 COG1034 NuoG NADH dehydrogenas 91.0 0.26 5.7E-06 59.8 5.0 97 13-127 1-104 (693)
100 PLN02441 cytokinin dehydrogena 90.6 0.82 1.8E-05 54.3 8.5 82 241-323 66-154 (525)
101 PRK14648 UDP-N-acetylenolpyruv 90.6 0.63 1.4E-05 52.3 7.2 114 234-367 23-139 (354)
102 COG3383 Uncharacterized anaero 89.6 0.56 1.2E-05 56.3 6.0 98 12-127 4-106 (978)
103 PRK11282 glcE glycolate oxidas 89.3 0.91 2E-05 51.3 7.3 100 249-367 4-103 (352)
104 KOG2282 NADH-ubiquinone oxidor 84.8 1.6 3.6E-05 50.2 5.9 104 7-127 26-135 (708)
105 PRK09970 xanthine dehydrogenas 76.7 3.8 8.2E-05 51.2 5.9 64 785-848 457-532 (759)
106 PRK09800 putative hypoxanthine 76.0 4.9 0.00011 51.3 6.7 62 786-847 662-734 (956)
107 TIGR03313 Se_sel_red_Mo probab 73.9 4.3 9.3E-05 51.9 5.4 62 786-847 658-730 (951)
108 TIGR02965 xanthine_xdhB xanthi 72.2 4 8.6E-05 51.0 4.5 60 787-846 446-516 (758)
109 TIGR02416 CO_dehy_Mo_lg carbon 70.7 4.7 0.0001 50.5 4.6 58 789-846 476-544 (770)
110 KOG3049 Succinate dehydrogenas 70.2 2.7 5.9E-05 43.3 2.0 48 30-87 75-126 (288)
111 TIGR03194 4hydrxCoA_A 4-hydrox 69.9 6.2 0.00013 49.2 5.5 61 786-846 442-513 (746)
112 PRK07440 hypothetical protein; 67.9 6.7 0.00015 33.6 3.7 31 11-45 2-32 (70)
113 PRK06083 sulfur carrier protei 64.6 9.3 0.0002 34.1 4.0 35 7-45 12-46 (84)
114 PRK00054 dihydroorotate dehydr 59.6 3.8 8.3E-05 43.8 0.8 16 48-63 214-229 (250)
115 TIGR02969 mam_aldehyde_ox alde 59.4 9.2 0.0002 50.8 4.3 61 786-846 1015-1086(1330)
116 TIGR01372 soxA sarcosine oxida 59.3 21 0.00045 46.2 7.4 81 11-101 10-99 (985)
117 PLN02906 xanthine dehydrogenas 57.5 12 0.00025 49.8 4.8 62 786-847 1010-1082(1319)
118 TIGR03196 pucD xanthine dehydr 57.0 15 0.00033 46.0 5.5 58 790-847 467-537 (768)
119 TIGR03311 Se_dep_Molyb_1 selen 56.2 14 0.00029 46.9 4.9 58 788-846 594-662 (848)
120 cd06192 DHOD_e_trans_like FAD/ 55.3 7.1 0.00015 41.4 2.0 18 46-63 211-228 (243)
121 PF10437 Lip_prot_lig_C: Bacte 55.1 55 0.0012 28.9 7.4 43 470-515 26-68 (86)
122 COG2104 ThiS Sulfur transfer p 50.8 19 0.00042 30.8 3.5 31 12-46 1-31 (68)
123 PF10418 DHODB_Fe-S_bind: Iron 49.7 10 0.00023 28.9 1.5 17 48-64 3-19 (40)
124 PF02738 Ald_Xan_dh_C2: Molybd 48.9 40 0.00086 40.5 7.1 58 788-845 319-387 (547)
125 TIGR02911 sulfite_red_B sulfit 47.4 7.6 0.00016 41.9 0.7 18 45-62 223-240 (261)
126 PRK05863 sulfur carrier protei 46.3 21 0.00045 30.0 3.0 28 14-45 1-28 (65)
127 PRK05659 sulfur carrier protei 45.5 22 0.00047 29.7 3.0 29 14-46 1-29 (66)
128 PRK08053 sulfur carrier protei 45.2 22 0.00048 29.9 3.0 28 14-45 1-28 (66)
129 PRK13904 murB UDP-N-acetylenol 43.1 41 0.00089 36.4 5.4 99 234-367 12-111 (257)
130 PRK08221 anaerobic sulfite red 40.3 11 0.00023 40.9 0.4 17 46-62 226-242 (263)
131 KOG4730 D-arabinono-1, 4-lacto 40.1 46 0.00099 38.6 5.3 79 243-324 53-131 (518)
132 COG2871 NqrF Na+-transporting 39.8 32 0.00069 37.5 3.8 49 12-63 35-85 (410)
133 PRK06944 sulfur carrier protei 35.6 37 0.0008 28.2 2.9 27 14-44 1-27 (65)
134 cd06221 sulfite_reductase_like 35.3 15 0.00032 39.4 0.6 17 46-62 224-240 (253)
135 PRK07696 sulfur carrier protei 34.6 42 0.00092 28.4 3.1 29 14-45 1-29 (67)
136 cd06220 DHOD_e_trans_like2 FAD 33.5 20 0.00043 37.8 1.2 16 48-63 200-215 (233)
137 PLN00192 aldehyde oxidase 32.5 71 0.0015 42.8 6.2 61 786-846 1028-1107(1344)
138 COG3894 Uncharacterized metal- 31.8 44 0.00096 39.1 3.6 49 13-67 3-52 (614)
139 cd06219 DHOD_e_trans_like1 FAD 31.8 27 0.00058 37.2 1.8 29 34-63 195-228 (248)
140 PRK08364 sulfur carrier protei 31.2 64 0.0014 27.5 3.7 31 13-45 4-36 (70)
141 PRK05802 hypothetical protein; 30.1 31 0.00066 38.6 2.0 18 46-63 287-304 (320)
142 PRK06488 sulfur carrier protei 29.7 54 0.0012 27.4 3.0 27 14-45 1-27 (65)
143 KOG3309 Ferredoxin [Energy pro 26.0 1.4E+02 0.0031 29.6 5.4 53 8-64 40-95 (159)
144 TIGR01683 thiS thiamine biosyn 23.9 68 0.0015 26.7 2.5 26 16-45 1-26 (64)
145 cd01813 UBP_N UBP ubiquitin pr 23.6 98 0.0021 26.7 3.5 34 12-46 1-34 (74)
146 cd06218 DHOD_e_trans FAD/NAD b 22.9 44 0.00096 35.6 1.5 17 48-64 213-229 (246)
147 cd00565 ThiS ThiaminS ubiquiti 20.7 94 0.002 25.9 2.8 27 15-45 1-27 (65)
No 1
>PLN00192 aldehyde oxidase
Probab=100.00 E-value=3e-170 Score=1595.51 Aligned_cols=821 Identities=74% Similarity=1.168 Sum_probs=694.0
Q ss_pred ceeEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhcc
Q 003040 10 TRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVN 89 (854)
Q Consensus 10 ~~~~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~ 89 (854)
++++|+|+|||+++++++++|++|||+|||++++|||||.||++|+||||||+|+++|+.++++++++|||||+|+++++
T Consensus 2 ~~~~i~~~vNg~~~~~~~~~p~~~Ll~~LR~~~~ltgtK~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~ 81 (1344)
T PLN00192 2 SNMSLVFAVNGERFELSSVDPSTTLLEFLRTQTPFKSVKLGCGEGGCGACVVLLSKYDPVLDQVEDFTVSSCLTLLCSVN 81 (1344)
T ss_pred CcceEEEEECCEEEEeccCCCCCcHHHHHHHhhCCCCcCCCCCCCcCCCcEEEEeeccccccCcCCcEEehHHHHHHHhC
Confidence 45679999999999997799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEecCCCCCCCCcchHhHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCccc
Q 003040 90 GCLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCR 169 (854)
Q Consensus 90 g~~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCR 169 (854)
|++|+|||||++.++.|||||+||+++||+|||||||||||+||+||+++....+|+|..+.+.+|++||+++|+|||||
T Consensus 82 g~~i~TvEgl~~~~~~lhpvq~a~~~~~~~QCGfCtpG~vms~~~ll~~~~~~~~~~p~~~~~~~~~~~i~~~l~gnlCR 161 (1344)
T PLN00192 82 GCSITTSEGLGNSKDGFHPIHKRFAGFHASQCGFCTPGMCISLFSALVNADKTDRPEPPSGFSKLTVVEAEKAVSGNLCR 161 (1344)
T ss_pred CCEEEeecCcCCCCCCCCHHHHHHHHcCCCccCCCChHHHHHHHHHHHhcccccCCCcccccCCCCHHHHHHHhcCCcee
Confidence 99999999999656789999999999999999999999999999999653100012321011134799999999999999
Q ss_pred cCCChhHHHHHHHhhhcccccccCCCcccccCCcccccccCCCCCCCCCcccCCCcccccc--cCcceeecCCceEEecC
Q 003040 170 CTGYRPIADACKSFAADVDIEDLGINSFWAKGESKEVKISRLPPYKHNGELCRFPLFLKKE--NSSAMLLDVKGSWHSPI 247 (854)
Q Consensus 170 Ctgy~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~--~~~~~~~~~~~~~~~P~ 247 (854)
|||||||++|+++++.+.++++++.+||++++.+.....++++++++++++|+| |+|+.. ....+.+..+++|++|+
T Consensus 162 CtgY~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~P~ 240 (1344)
T PLN00192 162 CTGYRPIVDACKSFAADVDIEDLGLNSFWKKGESEEAKLSKLPPYNHSDHICTF-PEFLKKEIKSSLLLDSSRYRWYTPV 240 (1344)
T ss_pred CCCCHHHHHHHHHHHhhccchhcccccccccCCcchhhhhhcccCCCccccccC-hhhhhcccCccceecCCCceEECcC
Confidence 999999999999999887777776667866432223344688999999888889 555432 22334444589999999
Q ss_pred CHHHHHHHHhhhcCCCCCcceEEccCccceEeeccccCceeeeCCCcccccceEecCCcEEecccccHHHHHHHHHHHhh
Q 003040 248 SVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEALKEETK 327 (854)
Q Consensus 248 sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~l~~~~~ 327 (854)
||+||+++|+++.. ..+++++|||||||++++....|+++|||++|+||+.|+.++++|+|||+|||+++++.+.+.
T Consensus 241 sl~ea~~ll~~~~~-~~~~a~lvAGgTdl~~~k~~~~p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~el~~~l~~~-- 317 (1344)
T PLN00192 241 SVEELQSLLESNNF-DGVSVKLVVGNTGTGYYKDEELYDKYIDIRHIPELSMIRRDEKGIEIGAVVTISKAIEALREE-- 317 (1344)
T ss_pred CHHHHHHHHHhCCC-CCCCeEEEEeCCcceeeeccCCCCeEEEcCCChhhhcEEecCCEEEEeecCcHHHHHHHHHhh--
Confidence 99999999995410 024899999999999987656789999999999999999999999999999999999886542
Q ss_pred hhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCeeEEEehhhhhcCCCC
Q 003040 328 EFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEEFLERPPL 407 (854)
Q Consensus 328 ~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp~~~~sD~~~~LlAldA~v~l~s~~g~R~vpl~dF~~~~~L 407 (854)
..++ ..+|.|.+++++|||+||||+|||||||+|++|.+++||++|+|+||||+|+|.+.+|+|+||++|||.++.+
T Consensus 318 ~~~~---~~~p~L~~~~~~vAs~qIRN~aTlGGNI~~Asp~~p~sD~~p~LlAl~A~v~l~s~~g~R~vpl~dFf~~~~l 394 (1344)
T PLN00192 318 SKSE---YVFKKIADHMEKIASRFVRNTGSIGGNLVMAQRKQFPSDIATILLAAGSTVNIQNASKREKLTLEEFLERPPL 394 (1344)
T ss_pred cccc---chHHHHHHHHHHhcChhhccceechhhhcccCCCCCchhHHHHHHHhCcEEEEEeCCceEEEeHHHHhccCcc
Confidence 1111 1589999999999999999999999999999976557999999999999999999999999999999998889
Q ss_pred CCCceEEEEEcCCCCccCCcccCCCcceEEEEEEeccCCCCCccceeeeeEEEEEcCCCCCCCceeeeeEEEEcccCC-C
Q 003040 408 DSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAFGAFGT-K 486 (854)
Q Consensus 408 ~~~Eii~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~d~a~v~~A~~v~~~~~~~~~~~~i~~~ria~Ggv~~-~ 486 (854)
++||||++|.||.+... ++.+...+|.+||+++||+++|||+||+||.++++.+.+.++++|+++||+||||++ +
T Consensus 395 ~~~Eil~~I~iP~~~~~----~~~~~~~~f~~yk~~~Rr~~~diA~V~aA~~v~~~~~~~~~~~~i~~aria~Ggvap~~ 470 (1344)
T PLN00192 395 DSKSLLLSVEIPSWTSS----SGSDTKLLFETYRAAPRPLGNALPYLNAAFLAEVSQDASSGGIVVNDCRLAFGAYGTKH 470 (1344)
T ss_pred CCcceEEEEEccCCccc----cccCcccceeeeeecccccccchhhheeeEEEEEEecccCCCCeEeEEEEEEecCCCCc
Confidence 99999999999965420 001125778899999995589999999999999852100013489999999999999 7
Q ss_pred cceeHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCCCCCCCCHHHHhHHHHHHHHHHHHHHhhhhc-CCCccccCCCCCCC
Q 003040 487 HAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGTSIPAYRSSLAVGFLYEFFGSLTEMKN-GISRDWLCGYSNNV 565 (854)
Q Consensus 487 ~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~~~~p~~d~~s~eYRr~la~~L~~r~l~~~~~~~~-~~~~~~~~~~~~~~ 565 (854)
|+|+.++|++|.||+|+++++++|++++.+++.|.++.+|++|||+|+.+|++|||.++++.+. ..++.+.-+. .
T Consensus 471 -P~ra~~~E~~L~Gk~~~~~~l~~A~~~l~~~~~p~~~~~s~eYRr~la~~l~~r~~~~~~~~~~~~~~~~~~~~~-~-- 546 (1344)
T PLN00192 471 -AIRARKVEEFLTGKVLSDSVLYEAVRLLKGIVVPEDGTSHPEYRSSLAVGFLFDFLSPLIESNAKSSNGWLDGGS-N-- 546 (1344)
T ss_pred -eecHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhccccccccccccc-c--
Confidence 9999999999999999999999999999999999988899999999999999999999997762 1111110000 0
Q ss_pred CccccccccccccccccccccccCccccccccCcCCcCCCCcccccccccccccceeccccCCCCCCcEEEEEEecCCCC
Q 003040 566 SLKDSHVQQNHKQFDESKVPTLLSSAEQVVQLSREYYPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPL 645 (854)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~s~g~q~~~~~~~~~~iGk~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~ 645 (854)
+.++...+....++||+++|.|.|++++++++|||+++|+|+..|+||+++|++|++.+|||||+++||||++|
T Consensus 547 ------~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~vG~~~~r~d~~~kvtG~a~Y~~Di~~~pgmL~a~~vrSp~ah 620 (1344)
T PLN00192 547 ------TKQNPDQHDDVKKPTLLLSSKQQVEENNEYHPVGEPIKKVGAALQASGEAVYVDDIPSPKNCLYGAFIYSTKPL 620 (1344)
T ss_pred ------ccccccccccccccCCCCCcceeeecccccCcCCCCCcChhhHhhcccceecccccCCCCCCEEEEEEecCCCc
Confidence 00111112344788999999999998899999999999999999999999999999856899999999999999
Q ss_pred ceeccCCCCccCCCCCEEEEEEcCCCCCCCCCCCccccCCCcccccCCceeecCCeEEEEEeCCHHHHHHhccccEEEEe
Q 003040 646 ARIKGIEFKSESVPDVVTALLSYKDIPEGGQNIGSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYE 725 (854)
Q Consensus 646 a~I~~ID~s~A~~~PGVv~v~t~~Dip~~g~n~~~~~~~~d~p~~a~~~V~y~GqpIa~VvAet~~~A~~Aa~~V~V~y~ 725 (854)
|+|++||+++|+++|||++|+|++|+|..+.|++......|+|+|++++|+|+||||++|||+|+++|++|+++|+|+|+
T Consensus 621 ArI~sID~s~A~~~pGV~aV~t~~Dip~~~~~~g~~~~~~~~~~la~~~Vr~~Gq~Va~VvA~t~~~A~~Aa~~V~VeYe 700 (1344)
T PLN00192 621 ARVKGIKFKSNLVPQGVLAVITFKDIPKGGQNIGSKTIFGPEPLFADEVTRCAGQRIALVVADTQKHADMAANLAVVEYD 700 (1344)
T ss_pred eEEEEEEhHHhhcCCCcEEEEchHHcCcccccCCCCCCCCCceeccCCEEEEcCCeEEEEEECCHHHHHHHhccCEEEEe
Confidence 99999999999999999999999999843334432222458999999999999999999999999999999999999993
Q ss_pred cCCCCCCcCCHHHHHhcCCCCcCCCcccCCCCCChhhhcccCCeeEEEEEEEECccccCCCCCCeEEEEECCCCcEEEEe
Q 003040 726 MGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYS 805 (854)
Q Consensus 726 ~e~l~p~v~~~~~Al~~~~~~~~~~~~~~~~~Gd~~~a~~~a~~~vve~~~~~~~q~H~~mEp~~a~A~~~~dg~l~V~~ 805 (854)
.+++.|+++|+++|++++++++.+........||++++|++|+++++|++|++++|+|+||||++|+|+|++||+|+||+
T Consensus 701 ~~~l~p~v~~i~~Al~~~s~~~~~~~~~~~~~GD~~~af~~a~~vv~e~~~~~~~q~H~~mEp~~~vA~~~~dg~l~V~~ 780 (1344)
T PLN00192 701 TENLEPPILTVEDAVKRSSLFEVPPFLYPKPVGDISKGMAEADHKILSAEIKLGSQYYFYMETQTALALPDEDNCIVVYS 780 (1344)
T ss_pred cCCCCCcccCHHHHhcCCCCcccChhhcccccCCHHHHhccCCeEEEEEEEEECCEeeeeccCceEEEEEcCCCCEEEEE
Confidence 21133789999999999876532222223467999999999999745999999999999999999999999887899999
Q ss_pred CCCChHHHHHHHHHHhCCCCCCEEEEeCCcCCCCCCCCCCcHHHHh
Q 003040 806 SIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGGKAIKAMPVSI 851 (854)
Q Consensus 806 stQ~p~~~~~~vA~~Lglp~~kV~V~~~~~GGgFGgK~~~~~~~a~ 851 (854)
|||+|+.+|..||++||||++||||+++++|||||+|.++...+++
T Consensus 781 sTQ~p~~~r~~vA~~Lgip~~~VrV~~~~vGGgFGgK~~~~~~~~~ 826 (1344)
T PLN00192 781 STQCPEYVHSVIARCLGIPEHNVRVITRRVGGGFGGKAVKSMPVAT 826 (1344)
T ss_pred CCCCHHHHHHHHHHHhCCChHHEEEEecccccCCCccccccchHHH
Confidence 9999999999999999999999999999999999999987655433
No 2
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=100.00 E-value=4.9e-165 Score=1547.09 Aligned_cols=772 Identities=32% Similarity=0.529 Sum_probs=672.5
Q ss_pred EEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccCce
Q 003040 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCL 92 (854)
Q Consensus 13 ~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g~~ 92 (854)
.|+|+|||+++++.+++|++|||+|||+++||||||.||++|+||||||+|+.+|+.++++++++|||||+|+++++|++
T Consensus 2 ~~~~~~Ng~~~~~~~~~~~~~ll~~LR~~~~l~gtk~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~ 81 (1330)
T TIGR02969 2 ELLFYVNGRKVVEKNVDPETMLLPYLRKKLRLTGTKYGCGGGGCGACTVMISRYNPSTKSIRHHPVNACLTPICSLYGAA 81 (1330)
T ss_pred cEEEEECCEEEEeccCCCCCcHHHHHHhhcCCCCCCCCcCCCCCCCcEEEECCccccccccCCcEEehhHHHHHHhCCCE
Confidence 48999999999765699999999999999999999999999999999999999999889999999999999999999999
Q ss_pred eEEecCCCCCCCCcchHhHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCccccCC
Q 003040 93 ITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTG 172 (854)
Q Consensus 93 i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRCtg 172 (854)
|+|||||++.++.|||||+||+++||+|||||||||||++++||++ +|+| |++||+++|+||||||||
T Consensus 82 v~TvEgl~~~~~~l~pvq~a~~~~~~~QCGfCtpG~vm~~~~ll~~-----~~~p-------~~~~i~~~l~gnlCRCtg 149 (1330)
T TIGR02969 82 VTTVEGIGSTRTRLHPVQERIAKCHGTQCGFCTPGMVMSMYALLRN-----HPEP-------TLDQLTDALGGNLCRCTG 149 (1330)
T ss_pred EEecCCcCCCCCCCCHHHHHHHHcCCCcCCCCchHHHHHHHHHHHc-----CCCC-------CHHHHHHHhcCCcccCCC
Confidence 9999999964568999999999999999999999999999999954 4666 599999999999999999
Q ss_pred ChhHHHHHHHhhhccc--ccccCCCccccc---C--Cc--------ccccccCCCCCCCCCcccCCCcccccc-c--Ccc
Q 003040 173 YRPIADACKSFAADVD--IEDLGINSFWAK---G--ES--------KEVKISRLPPYKHNGELCRFPLFLKKE-N--SSA 234 (854)
Q Consensus 173 y~~i~~a~~~~~~~~~--~~~~~~~~~~~~---~--~~--------~~~~~~~~~~~~~~~~~~~~p~~l~~~-~--~~~ 234 (854)
|++|++|+++++.+.. +++++.+||+.+ + ++ .....+.+.++++.++ .+||++|... . +..
T Consensus 150 Y~~i~~a~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~fp~~l~~~~~~~~~~ 228 (1330)
T TIGR02969 150 YRPIIDACKTFCKTSGCCQSKENGVCCLDQGINGLPEFEEGDETSPELFSEEEFLPLDPTQE-LIFPPELMRMAEKQPQR 228 (1330)
T ss_pred CHHHHHHHHHHhhccCCchhccccCccccccccccccccccccccccccchhcccCCCcccc-ccCChhHhhcccccccc
Confidence 9999999999997743 334444677621 1 00 0111234555776654 5899988743 1 222
Q ss_pred -eeecC-CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceE-eecc-ccCceeeeCCCcccccceEecCCcEEec
Q 003040 235 -MLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGY-YKEV-EHYDKYIDIRYIPELSVIRRDQTGIEIG 310 (854)
Q Consensus 235 -~~~~~-~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~-~k~~-~~~~~lIdl~~I~EL~~I~~~~~~l~IG 310 (854)
+.+.+ ..+|++|+||+||+++|++ ++++++|||||||++ ++.+ ..++.+|||++|+||+.|+.++++|+||
T Consensus 229 ~~~~~~~~~~~~~P~tl~ea~~ll~~-----~~~a~lvAGGTdl~~~~k~~~~~~~~lIdi~~I~EL~~i~~~~~~l~IG 303 (1330)
T TIGR02969 229 TRVFYSERMMWISPVTLKELLEAKFK-----YPQAPVVMGNTSVGPEVKFKGVFHPVIISPDRIEELSVVNHTGDGLTLG 303 (1330)
T ss_pred eeeecCCCceEECCCCHHHHHHHHHh-----CCCCEEEecCcchHHHhhhccCCCCeEEECCCChhhhcEEEcCCEEEEe
Confidence 55655 6899999999999999994 589999999999998 5543 5778999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeC
Q 003040 311 ATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTG 390 (854)
Q Consensus 311 A~vTl~~l~~~l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp~~~~sD~~~~LlAldA~v~l~s~ 390 (854)
|+|||++|++.+.+.++++++...+.+|.|++++++|||+||||+|||||||||+||+ ||++|+|+||||+|+|.+.
T Consensus 304 A~vT~~el~~~l~~~i~~~p~~~~~~~p~L~~a~~~ias~qIRN~gTlGGNi~~asP~---sD~~p~LlAl~A~v~l~s~ 380 (1330)
T TIGR02969 304 AGLSLAQVKDILADVVQKLPEETTQTYRALLKHLGTLAGSQIRNMASLGGHIISRHLD---SDLNPLLAVGNCTLNLLSK 380 (1330)
T ss_pred ccccHHHHHHHHHHhhhcCchhhhHHHHHHHHHHHHhCChhhcccccchhhcccCCCc---hhHHHHHHHcCcEEEEecC
Confidence 9999999999887776666666677899999999999999999999999999999999 9999999999999999999
Q ss_pred CeeEEEehhhhhc----CCCCCCCceEEEEEcCCCCccCCcccCCCcceEEEEEEeccCCCCCccceeeeeEEEEEcCCC
Q 003040 391 QKCEKLMLEEFLE----RPPLDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCK 466 (854)
Q Consensus 391 ~g~R~vpl~dF~~----~~~L~~~Eii~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~d~a~v~~A~~v~~~~~~ 466 (854)
+|+|+||++|||. +++|+++|||++|.||.+.. +.++.+||+++| +++|||+||+|+.+++++
T Consensus 381 ~g~R~vpl~dff~~~~~~t~L~~~Eil~~I~iP~~~~----------~~~~~~~K~~~R-~~~dia~V~~A~~v~l~~-- 447 (1330)
T TIGR02969 381 EGKRQIPLSEQFLSKCPDADLKPQEILVSVNIPYSRK----------WEFVSAFRQAQR-QQNALAIVNSGMRVFFGE-- 447 (1330)
T ss_pred CceEEEehHHhhhcccccccCCCCceEEEEEecCCCC----------ccceeEEEEcCC-ccccHHHhhheEEEEEEc--
Confidence 9999999999883 67999999999999997643 356778999999 799999999999999941
Q ss_pred CCCCceeeeeEEEEcccCCCcceeHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCC-CCCC-CCHHHHhHHHHHHHHHHHH
Q 003040 467 TGDGIRVNNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVP-EDGT-SIPAYRSSLAVGFLYEFFG 544 (854)
Q Consensus 467 ~~~~~~i~~~ria~Ggv~~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~~~~p-~~d~-~s~eYRr~la~~L~~r~l~ 544 (854)
++++|+++||+||||+++ |+|+.++|++|.||+|+++++++|++++.+++.| .+|. +|++|||+|+.+||+|||+
T Consensus 448 --~~~~i~~aria~Ggvap~-p~ra~~~E~~L~Gk~~~~~~~~~A~~~l~~~~~p~~~d~r~sa~YRr~la~~ll~kf~~ 524 (1330)
T TIGR02969 448 --GDGIIRELSISYGGVGPT-TICAKNSCQKLIGRPWNEEMLDTACRLILDEVSLAGSAPGGKVEFKRTLIISFLFKFYL 524 (1330)
T ss_pred --CCCEEeEEEEEEEcCcCc-eecHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 146999999999999999 9999999999999999999999999999999986 5545 6999999999999999999
Q ss_pred HHhhhhcCCCccccCCCCCCCCccccccccccccccccccccccCccccccccC--c--CCcCCCCcccccccccccccc
Q 003040 545 SLTEMKNGISRDWLCGYSNNVSLKDSHVQQNHKQFDESKVPTLLSSAEQVVQLS--R--EYYPVGEPITKSGAALQASGE 620 (854)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~g~q~~~~~--~--~~~~iGk~~~r~d~~~kvtG~ 620 (854)
++..++....+... +..+. +.. +....+++|+++|.|.|+.. . ..++|||+++|+|+..||||+
T Consensus 525 ~~~~~~~~~~~~~~------~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGk~v~r~d~~~kvtG~ 592 (1330)
T TIGR02969 525 EVSQILKRMDPGHY------PSLAD----KYE--SALEDLHSKHHWSTLKHQNVDSMQLPQDPIGHPIMHLSGVKHATGE 592 (1330)
T ss_pred HHhhhhcccccccc------ccCCh----hhc--cccccccCCCCccccceecccccccccCcCCCCCcChhhHhhcccc
Confidence 99987632111100 00110 011 13457889999999988742 2 238899999999999999999
Q ss_pred eeccccCCCCCCcEEEEEEecCCCCceeccCCCCccCCCCCEEEEEEcCCCCCCCCCCCccccCCCcccccCCceeecCC
Q 003040 621 AIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNIGSKTIFGSEPLFADELTRCAGQ 700 (854)
Q Consensus 621 a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~~ID~s~A~~~PGVv~v~t~~Dip~~g~n~~~~~~~~d~p~~a~~~V~y~Gq 700 (854)
++|++|++.+|||||+++||||++||+|++||+++|++||||++|+|++|+| +.|. +.++|+|++++|+|+||
T Consensus 593 a~Y~~Di~~~pgmL~a~~vrSp~ahArI~sID~s~A~~~pGV~~V~t~~Dvp--~~~~-----~~~~~~la~~~Vr~~Gq 665 (1330)
T TIGR02969 593 AIYCDDMPAVDQELFLTFVTSSRAHAKIVSIDLSEALSLPGVVDIITAEHLQ--DANT-----FGTEKLLATDKVHCVGQ 665 (1330)
T ss_pred ccccCCCCCCCCCEEEEEEecCCCceEEEeeeHHHHhcCCCeEEEEeHHHCC--CCCC-----CCCeeecCCCeEEEcCC
Confidence 9999999746999999999999999999999999999999999999999998 4332 24889999999999999
Q ss_pred eEEEEEeCCHHHHHHhccccEEEEecCCCCCCcCCHHHHHhcCCCCcCCCcccCCCCCChhhhcccCCeeEEEEEEEECc
Q 003040 701 PVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISKGMNEADHRILAAEIKLGS 780 (854)
Q Consensus 701 pIa~VvAet~~~A~~Aa~~V~V~y~~e~l~p~v~~~~~Al~~~~~~~~~~~~~~~~~Gd~~~a~~~a~~~vve~~~~~~~ 780 (854)
|||+|||+|+++|++|+++|+|+| |+++|+++|+++|+++++++... .....||++++|++|+++ ||++|++++
T Consensus 666 pva~VvAet~~~A~~Aa~~V~VeY--e~l~~~v~d~~~Al~~~a~~~~~---~~~~~Gdv~~af~~a~~v-ve~~y~~~~ 739 (1330)
T TIGR02969 666 LVCAVIADSEVQAKQAAKHVKIVY--RDLEPLILTIEEAIQHKSFFEPE---RKLEYGNVDEAFKVVDQI-LEGEIHMGG 739 (1330)
T ss_pred eEEEEEECCHHHHHHHhcCCEEEE--ecCCCCcCCHHHHhcCCCEeccc---ccccCCchhhhhccCCEE-EEEEEEECC
Confidence 999999999999999999999999 77856679999999987654321 135789999999999985 999999999
Q ss_pred cccCCCCCCeEEEEECC-CCcEEEEeCCCChHHHHHHHHHHhCCCCCCEEEEeCCcCCCCCCCCCCc
Q 003040 781 QYYFYMETQTALAVPDE-DNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGGKAIKA 846 (854)
Q Consensus 781 q~H~~mEp~~a~A~~~~-dg~l~V~~stQ~p~~~~~~vA~~Lglp~~kV~V~~~~~GGgFGgK~~~~ 846 (854)
|+|+||||++|+|+|++ ||+|+||+|||+|+.+|..||++||||++||||+++++|||||+|.+..
T Consensus 740 ~~H~~mEp~~~~A~~~~~~g~l~V~~stQ~p~~~r~~vA~~Lglp~~kVrV~~~~vGGgFG~K~~~~ 806 (1330)
T TIGR02969 740 QEHFYMETQSMLVVPKGEDQEMDVYVSTQFPKYIQDIVAATLKLPVNKVMCHVRRVGGAFGGKVGKT 806 (1330)
T ss_pred EeecccCCCEEEEEEeCCCCeEEEEECCcCHHHHHHHHHHHhCCCHHHeEEEeCCcccCcccccccc
Confidence 99999999999999984 5789999999999999999999999999999999999999999999976
No 3
>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]
Probab=100.00 E-value=8.5e-165 Score=1434.84 Aligned_cols=766 Identities=43% Similarity=0.723 Sum_probs=686.4
Q ss_pred eEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccCc
Q 003040 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGC 91 (854)
Q Consensus 12 ~~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g~ 91 (854)
|.+.|+|||++++++.+||++||+.|||++++|||||.||+||+||||||++++||+.+ ++.+++|||||+|+++++|+
T Consensus 1 ~~l~F~VNG~~~~~~~vdP~~TL~~fLR~k~~ltgtKlgC~EGGCGaCtv~ls~~dp~~-~~~~~avNsCLt~l~s~~g~ 79 (1257)
T KOG0430|consen 1 MELVFAINGKRVEVELLPPDLTLNTFLREKLGLTGTKLGCGEGGCGACTVVLSKYDPEL-KVRHWAVNSCLTLLNSVHGL 79 (1257)
T ss_pred CceEEEECCEEeeEecCCcchhHHHHHHHhcCCcceeeccCCCCccceEEEEeccCCCc-eeEEeehhhhhhhcccccce
Confidence 56899999999999999999999999999999999999999999999999999999998 88999999999999999999
Q ss_pred eeEEecCCCCCCCCcchHhHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCccccC
Q 003040 92 LITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCT 171 (854)
Q Consensus 92 ~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRCt 171 (854)
+|||+||||++.+++||||++|+..||+||||||||||||||+||+|++ ..| |++||+++|+|||||||
T Consensus 80 ~VtT~EGlGn~~~g~HPiq~RlA~~hgsQCGFCtPG~vmsmYalL~n~~----~~~-------T~~eie~a~~GNLCRCT 148 (1257)
T KOG0430|consen 80 EVTTSEGLGNRRDGYHPIQERLAKMHGSQCGFCTPGFVMSMYALLRNSK----NSP-------TMEEIENAFGGNLCRCT 148 (1257)
T ss_pred EEEeeecccccccCcCcHHHHHhhccCCcccCCCccHHHHHHHHHHhCC----CCC-------CHHHHHHhhccceeeec
Confidence 9999999999889999999999999999999999999999999997642 123 79999999999999999
Q ss_pred CChhHHHHHHHhhhcccccccCCCcccccCCcccccccCCCCCCCCCcccCCCcccccccCcceeecC-CceEEecCCHH
Q 003040 172 GYRPIADACKSFAADVDIEDLGINSFWAKGESKEVKISRLPPYKHNGELCRFPLFLKKENSSAMLLDV-KGSWHSPISVQ 250 (854)
Q Consensus 172 gy~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~-~~~~~~P~sl~ 250 (854)
|||||+||+|+||.+.++|++|.+..|++ +++....++ ++|+|+++. +|||++....+. ..+.. +.+|++|.||+
T Consensus 149 GYRPIldA~kSFa~d~~~~~~g~~~~~~~-~~~~~~~~~-~~~dp~~~~-i~~pe~~~~~~~-~~~~~~~~~W~~P~sl~ 224 (1257)
T KOG0430|consen 149 GYRPILDAMKSFAVDSDICGPGCDGFSIA-EEKDIEDLS-PPYDPKKEL-IFPPELLKRKKT-TLLGNDGIRWYWPVSLE 224 (1257)
T ss_pred CCchHHHHHhhhccCCCccccCccccccc-ccccccccc-CCCCCccCc-ccChHHhccccc-cccCCCCcEEeCcccHH
Confidence 99999999999999999998875444444 444455566 899998866 777777655333 33443 89999999999
Q ss_pred HHHHHHhhhcCCCCCcceEEccCccceEeeccccCceeeeCCCcccccceEecCCcEEecccccHHHHHHHHHHHhhhhh
Q 003040 251 ELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEALKEETKEFH 330 (854)
Q Consensus 251 eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~l~~~~~~~~ 330 (854)
|++++++ +.+++++|+|||..++++....++++||++.||||+.+..++++|+|||++|++++++.+++.++ .+
T Consensus 225 eL~~~~~-----~~~~~~Lv~GNT~~gv~~r~~~~~~~Id~~~v~el~~~~~~~~gi~lGa~~sls~~~~~l~~~~~-~~ 298 (1257)
T KOG0430|consen 225 ELFELKA-----NKPDAKLVAGNTAHGVYRRSPDYQKFIDVSGVPELKALNVDDNGLELGAALSLSETMELLRKLVK-RP 298 (1257)
T ss_pred HHHHHHh-----cCcceEEEeccccceEEeccCCCcceechhcCchhhhcccCCCceEEcccccHHHHHHHHHHHHh-Cc
Confidence 9999999 57999999999999997665669999999999999988889999999999999999999887654 33
Q ss_pred hhhhhhHHHHHHHHHHhccccccCCcccCCccccccC-CCCCCchHHHHHhcCcEEEEEeCCe-eEEEehhhhhcCCCCC
Q 003040 331 SEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQR-KHFPSDVATVLLGAGAMVNIMTGQK-CEKLMLEEFLERPPLD 408 (854)
Q Consensus 331 ~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp-~~~~sD~~~~LlAldA~v~l~s~~g-~R~vpl~dF~~~~~L~ 408 (854)
. .++|+.+.+|+++||++||||.|||||||+.+++ ..||||++++|+|+||+|++.+..+ ..++.+.+|.... |.
T Consensus 299 ~--~~~~~~~~~hl~~~A~~~IRN~atigGnI~~~~~~~~f~SDl~~~l~a~~a~v~~~~~~~~~~~~~l~~y~~~~-l~ 375 (1257)
T KOG0430|consen 299 G--FEYFKALWEHLKWFANVQIRNVGTIGGNICTKAQSPEFPSDLFILLEALDAKVTILNNSGDLEKVFLEEYLGSS-LG 375 (1257)
T ss_pred H--HHHHHHHHHHHHHhcccceeccccccceeEeccCCCCCchhHHHHHHhhccEEEEeecCCccceeeHhhhhccc-cC
Confidence 2 2789999999999999999999999999988887 5789999999999999999998655 8889999998655 99
Q ss_pred CCceEEEEEcCCCCccCCcccCCCcceEEEEEEeccCCCCCccceeeeeEEEEEcCCCCCCCceeeeeEEEEcccCCCcc
Q 003040 409 SRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAFGAFGTKHA 488 (854)
Q Consensus 409 ~~Eii~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~d~a~v~~A~~v~~~~~~~~~~~~i~~~ria~Ggv~~~~p 488 (854)
++|||.+|.||.+.. +|.+||+++| +++|+|+||++|+..+ ++|+++||+|||++|. .
T Consensus 376 ~~~illsv~ip~~~~------------~f~~~k~a~R-~e~a~a~vNa~fl~e~--------~~V~~~~i~fGg~~p~-~ 433 (1257)
T KOG0430|consen 376 AKEILLSVVLPASRK------------YFESYKQAPR-RENAIAYVNAAFLAEV--------GKVSSARICFGGIAPD-F 433 (1257)
T ss_pred cceEEEEEEccCcHH------------HHHHHHhccc-ccchhhhhhHHhhhcc--------ceeeeeeEeecCcCcc-h
Confidence 999999999998852 6889999999 7899999999887765 3899999999999999 9
Q ss_pred eeHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCCCCCCCCHHHHhHHHHHHHHHHHHHHhhhhcCCCccccCCCCCCCCcc
Q 003040 489 IRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGTSIPAYRSSLAVGFLYEFFGSLTEMKNGISRDWLCGYSNNVSLK 568 (854)
Q Consensus 489 ~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~~~~p~~d~~s~eYRr~la~~L~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (854)
+++.++|+.|.||.|+++++++|+.+|.+++.|..+.++.+||+.||.+||+|||+.+.+..+.. ..+..|
T Consensus 434 i~a~~~~~~~~gk~~~~~ll~~a~~lL~~~l~~~~p~~~~~yR~~La~sfffKF~l~~~~~~~~~-~~~~~g-------- 504 (1257)
T KOG0430|consen 434 IHAKKTEELLLGKPWEEELLEDAFGLLQSDLVPDEPGGMPEYRKKLALGFFFKFLLKVAHKVKNG-NKFITG-------- 504 (1257)
T ss_pred hhhhhHHHHhhcccccHHHHHHHHHhhhhhccCCCCCCcHHHHHHHHHHHHHHHHHHHhhhcccc-CCccCC--------
Confidence 99999999999999999999999999999999988889999999999999999999999887522 222222
Q ss_pred ccccccccccccccccccccCccccccccCcCCcCCCCcccccccccccccceeccccCCCCCCcEEEEEEecCCCCcee
Q 003040 569 DSHVQQNHKQFDESKVPTLLSSAEQVVQLSREYYPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARI 648 (854)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~s~g~q~~~~~~~~~~iGk~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I 648 (854)
.....+|+.++.|.+++..+.++||+|+.|+.+..|+||||.|++||+.+++.||++||.|+++||+|
T Consensus 505 ------------~~~~~~~~ls~~Q~~~~~q~~~pVG~pi~~~~a~~qaSGEAvY~dDip~~~n~lh~aFV~St~p~A~I 572 (1257)
T KOG0430|consen 505 ------------GSLLARPLLSGGQQFETTQEHYPVGRPVEKLEALIQASGEATYVDDIPTPPNTLHAAFVLSTKPHAKI 572 (1257)
T ss_pred ------------CccccccccccceeecCCCCCCcCcchhhhhhhhhhcccceEEecCCCCCCCeeEEEEEEcccCCcEE
Confidence 12345778888888888777999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccCCCCCEEEEEEcCCCCCCCCCC---CccccCCCcccccCCceeecCCeEEEEEeCCHHHHHHhccccEEEEe
Q 003040 649 KGIEFKSESVPDVVTALLSYKDIPEGGQNI---GSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYE 725 (854)
Q Consensus 649 ~~ID~s~A~~~PGVv~v~t~~Dip~~g~n~---~~~~~~~d~p~~a~~~V~y~GqpIa~VvAet~~~A~~Aa~~V~V~y~ 725 (854)
++||+|+|+.+|||+++++++||| |.|. +......|+++||+++|+|+||||++|||+|.++|++||++|+|+|
T Consensus 573 ~sID~seAl~~~GVv~~~~akDiP--g~n~~~i~~~~~~~de~lFA~~~v~~~GQ~ig~ivAdt~~~A~rAA~lVkv~Y- 649 (1257)
T KOG0430|consen 573 LSIDASEALKLPGVVAFFSAKDIP--GNNMKNIGNMFFPEDEELFATDVVTCVGQPIGVIVADTHELAKRAAKLVKVEY- 649 (1257)
T ss_pred eeecchhhcCCCceEEEEecccCC--CCCccccccccCCCccceeecceeEEcCcEEEEEEeCCHHHHHHhhhceEEEe-
Confidence 999999999999999999999999 5552 2222357999999999999999999999999999999999999999
Q ss_pred cCCCCCCcCCHHHHHhcCCCCcCCCcccCCCCCChhhhc--ccCCeeEEEEEEEECccccCCCCCCeEEEEECCCCcEEE
Q 003040 726 MGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISKGM--NEADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVV 803 (854)
Q Consensus 726 ~e~l~p~v~~~~~Al~~~~~~~~~~~~~~~~~Gd~~~a~--~~a~~~vve~~~~~~~q~H~~mEp~~a~A~~~~dg~l~V 803 (854)
++++|+++++++|+++.+++..++ .++.+++.+.+ .++|. ++|++++++.|+|||||||+++|+|++| .|+|
T Consensus 650 -~~l~p~I~t~e~Ai~~~s~~~~~~---~~~~~~~~~~~~~~~~d~-i~~Ge~~mG~QeHFYmEtQttl~vP~e~-el~v 723 (1257)
T KOG0430|consen 650 -EELPPPILPSEDAVKDKSLSETEP---RLRKGDVGKSFQLEECDK-ILEGELDMGGQEHFYMEPQTTLVVPFEG-ELQV 723 (1257)
T ss_pred -ccCCCceecHHHHHhhhcccCCCc---cccccCccccccccccce-eEEEEEEecceeEEEeccceeEEeecCC-eEEE
Confidence 778788999999999998766433 34555555555 55687 4999999999999999999999999987 8999
Q ss_pred EeCCCChHHHHHHHHHHhCCCCCCEEEEeCCcCCCCCCCCCCcHHHHhccC
Q 003040 804 YSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGGKAIKAMPVSISHM 854 (854)
Q Consensus 804 ~~stQ~p~~~~~~vA~~Lglp~~kV~V~~~~~GGgFGgK~~~~~~~a~a~A 854 (854)
|+|||||..+|..||++||||.|||+|+++|+|||||||.+++.++|||||
T Consensus 724 ~~STQ~~~~tQ~~VA~~Lgipa~~V~v~trRvGGGFGGK~trs~~VA~a~A 774 (1257)
T KOG0430|consen 724 YSSTQWPDFTQSVVAHVLGLPANKVQVKTRRLGGGFGGKETRSNPVAAAAA 774 (1257)
T ss_pred EEcCcCcHHHHHHHHHHhCCCccceEEEEEeeccccccccccccHHHHHHH
Confidence 999999999999999999999999999999999999999999999999986
No 4
>PLN02906 xanthine dehydrogenase
Probab=100.00 E-value=5.1e-162 Score=1521.29 Aligned_cols=758 Identities=33% Similarity=0.533 Sum_probs=662.7
Q ss_pred CCcHHHHHhhccCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccCceeEEecCCCCCCCCcchHh
Q 003040 31 STTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEGLGNSKTGFHPIH 110 (854)
Q Consensus 31 ~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~TvEgl~~~~~~~h~iq 110 (854)
++|||+|||+ +||||||.||++|+||||||+|+++|+.++++.+++|||||+|+++++|++|+|||||++.++.+||||
T Consensus 1 ~~~ll~~LR~-~~l~g~k~gC~~g~CGaCtv~~~~~~~~~~~~~~~~v~sC~~~~~~~~g~~i~Tvegl~~~~~~~~~vq 79 (1319)
T PLN02906 1 HQTLLEYLRD-LGLTGTKLGCGEGGCGACTVMVSHYDRKTGKCVHYAVNACLAPLYSVEGMHVITVEGIGNRRDGLHPVQ 79 (1319)
T ss_pred CCcHHHHHHh-CCCCCCCCCcCCCCCCCeEEEECCccccCCccCCeEehhhHHHHHHhCCCEEEecCCCCCCCCCCCHHH
Confidence 4799999998 999999999999999999999999998888899999999999999999999999999996557899999
Q ss_pred HHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCccccCCChhHHHHHHHhhhccc--
Q 003040 111 QRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIADACKSFAADVD-- 188 (854)
Q Consensus 111 ~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRCtgy~~i~~a~~~~~~~~~-- 188 (854)
+||+++||+|||||||||||+|++||+++ .+.| ++++|+++|+|||||||||+||++|+++++.+.+
T Consensus 80 ~a~~~~~~~QCG~CtpG~vm~~~~ll~~~----~~~~-------~~~~i~~~l~gnlCRCtgy~~i~~a~~~~~~~~~~~ 148 (1319)
T PLN02906 80 EALASMHGSQCGFCTPGFIMSMYALLRSS----KTPP-------TEEQIEECLAGNLCRCTGYRPILDAFRVFAKTDDAL 148 (1319)
T ss_pred HHHHHcCCCcCCCCchHHHHHHHHHHHhC----CCCC-------CHHHHHHHhcCCcccCCCCHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999543 1234 6999999999999999999999999999997742
Q ss_pred --------ccccCCCcccccCCcc----------------cc----cccCCCCCCCCCcccCCCcccccccCcceeecC-
Q 003040 189 --------IEDLGINSFWAKGESK----------------EV----KISRLPPYKHNGELCRFPLFLKKENSSAMLLDV- 239 (854)
Q Consensus 189 --------~~~~~~~~~~~~~~~~----------------~~----~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~- 239 (854)
+++++ +||..++..+ .+ ..+++++|+++|++ +||++|....+..+.+.+
T Consensus 149 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~f~~~l~~~~~~~~~~~~~ 226 (1319)
T PLN02906 149 YTGVSSLSLQDGE-PICPSTGKPCSCGSKTTSAAGTCKSDRFQPISYSEIDGSWYTEKEL-IFPPELLLRKLTPLKLLGN 226 (1319)
T ss_pred CCcccchhhhhcc-ccccccCcccccccccccccccccccccccccccccccccCccccc-cCCHHHhhCCCcceeecCC
Confidence 12222 4553221100 00 11456788888764 999998654445566643
Q ss_pred -CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceE-eecc-ccCceeeeCCCcccccceEecCCcEEecccccHH
Q 003040 240 -KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGY-YKEV-EHYDKYIDIRYIPELSVIRRDQTGIEIGATVTIS 316 (854)
Q Consensus 240 -~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~-~k~~-~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~ 316 (854)
.++||+|+||+||+++|++ ++++++|||||||++ ++.+ ..++++|||++|+||++|+.++++|+|||+|||+
T Consensus 227 ~~~~~~~P~tl~ea~~ll~~-----~~~a~ivAGGTdl~~~~~~~~~~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~ 301 (1319)
T PLN02906 227 GGLTWYRPTSLQHLLELKAE-----YPDAKLVVGNTEVGIEMRFKNAQYPVLISPTHVPELNAIKVKDDGLEIGAAVRLS 301 (1319)
T ss_pred CCceEECcCCHHHHHHHHHh-----CCCCEEEEcCchhHHHhhhccCCCCeEEECCCChhhhcEEecCCEEEEecCCcHH
Confidence 7999999999999999994 588999999999998 4443 6789999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCe-eEE
Q 003040 317 KAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQK-CEK 395 (854)
Q Consensus 317 ~l~~~l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp~~~~sD~~~~LlAldA~v~l~s~~g-~R~ 395 (854)
+|++++...+++.++.....+|.|.+++++|||+||||+||||||||+++|+ ||++|+|+||||+|+|.+.+| +|+
T Consensus 302 el~~~l~~~i~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~asP~---sD~~p~LlAl~A~v~l~s~~g~~R~ 378 (1319)
T PLN02906 302 ELQNLFRKVVKERPAHETSACKAFIEQLKWFAGTQIRNVASIGGNICTASPI---SDLNPLWMAAGATFVIISCDGDIRS 378 (1319)
T ss_pred HHHHHHHHHhhhcchhhhHHHHHHHHHHHHhCCHhhcCceechhhhccCCCc---hhHHHHHHHcCcEEEEEcCCCCeEE
Confidence 9999887776655666677899999999999999999999999999999998 999999999999999999886 899
Q ss_pred Eehhhhhc---CCCCCCCceEEEEEcCCCCccCCcccCCCcceEEEEEEeccCCCCCccceeeeeEEEEEcCCCCCCCce
Q 003040 396 LMLEEFLE---RPPLDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIR 472 (854)
Q Consensus 396 vpl~dF~~---~~~L~~~Eii~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~d~a~v~~A~~v~~~~~~~~~~~~ 472 (854)
||++|||. ++.|.++|||++|+||.+.. ..++.+||+++| +++|||+||+|+.++++..+ ++++
T Consensus 379 vpl~dFf~g~~kt~L~~~Eil~~I~iP~~~~----------~~~~~~~K~~~R-~~~dia~V~~A~~v~l~~~~--~~~~ 445 (1319)
T PLN02906 379 VPASDFFLGYRKVDLKPDEILLSVFLPWTRP----------FEYVKEFKQAHR-RDDDIAIVNAGMRVKLEEKD--GEWI 445 (1319)
T ss_pred EEHHHhcCccccccCCCCceEEEEEccCCCC----------CccEEEEEEcCc-cccchhheeeEEEEEEecCC--CCce
Confidence 99999997 67999999999999997654 466788999999 79999999999999996311 1128
Q ss_pred eeeeEEEEcccCCCcceeHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCCCCCC--CCHHHHhHHHHHHHHHHHHHHhhhh
Q 003040 473 VNNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGT--SIPAYRSSLAVGFLYEFFGSLTEMK 550 (854)
Q Consensus 473 i~~~ria~Ggv~~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~~~~p~~d~--~s~eYRr~la~~L~~r~l~~~~~~~ 550 (854)
|+++||+||||+++ |+|+.++|++|.|++|+++++++|++.+.+++.|.++. +|++||++|+++|++|||+++.+++
T Consensus 446 i~~aria~Ggva~~-p~ra~~~E~~L~G~~~~~~~i~~A~~~l~~~~~p~~d~~~~sa~YR~~la~~ll~r~~~~~~~~~ 524 (1319)
T PLN02906 446 VSDASIAYGGVAPL-SVSARKTEEFLIGKPWNKETLQDALKVLQKDILIKEDAPGGMVEFRKSLALSFFFKFFLWVSHQL 524 (1319)
T ss_pred EeEEEEEEeccCCc-eecHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCcCCCCCCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999 99999999999999999999999999999999988775 5999999999999999999999876
Q ss_pred cCCCccccCCCCCCCCccccccccccccccccccccccCccccccccCcCCcCCCCcccccccccccccceeccccCCCC
Q 003040 551 NGISRDWLCGYSNNVSLKDSHVQQNHKQFDESKVPTLLSSAEQVVQLSREYYPVGEPITKSGAALQASGEAIYVDDIPSP 630 (854)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~g~q~~~~~~~~~~iGk~~~r~d~~~kvtG~a~Y~~Di~~~ 630 (854)
....+.+. ..++ ... ++...++||+|+|.|.|+.++++++|||+++|+|+..||||+++|++|++.+
T Consensus 525 ~~~~~~~~----~~~~--------~~~-~~~~~~~~~~~~~~q~~~~~~~~~~vGk~~~r~d~~~kvtG~a~Y~~Di~~~ 591 (1319)
T PLN02906 525 EADGSTIE----TFPE--------SHL-SAAQPFPRPSSVGMQDYETVKQGTAVGQPEVHLSAELQVTGEAEYADDIPMP 591 (1319)
T ss_pred cccccccc----cCCh--------hhc-cccccccCCCCccceecccccccccCCCCccCcchhhhcceeEEeccCCcCC
Confidence 21000000 0000 011 1245789999999999998899999999999999999999999999999855
Q ss_pred CCcEEEEEEecCCCCceeccCCCCccCCCCCEEEEEEcCCCCCCCCC-CCccccCCCcccccCCceeecCCeEEEEEeCC
Q 003040 631 INCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQN-IGSKTIFGSEPLFADELTRCAGQPVAFVVADS 709 (854)
Q Consensus 631 ~gmL~a~~vrSp~a~a~I~~ID~s~A~~~PGVv~v~t~~Dip~~g~n-~~~~~~~~d~p~~a~~~V~y~GqpIa~VvAet 709 (854)
|||||+++||||++||+|++||+|+|++||||++|+|++|+| +.| +| ....|+|+|++++|+|+|||||+|||+|
T Consensus 592 ~g~L~a~~vrSp~aharI~sID~s~A~~~pGV~~v~t~~Dip--~~~~~g--~~~~~~~~la~~~V~y~GqpVa~VvA~t 667 (1319)
T PLN02906 592 PNTLHAALVLSTKPHARILSIDDSEAKSSPGFAGIFLAKDVP--GDNMIG--PVVHDEELFATDVVTCVGQVIGVVVADT 667 (1319)
T ss_pred CCCEEEEEEecCcCceEEeecchHHHhCCCCeEEEEchhhCC--CCCCCC--CCCCCeeEecCcEEEEcCCeEEEEEECC
Confidence 899999999999999999999999999999999999999998 433 33 2346899999999999999999999999
Q ss_pred HHHHHHhccccEEEEecCCCCCCcCCHHHHHhcCCCCcCCCcccCCCCCChhhhccc--CCeeEEEEEEEECccccCCCC
Q 003040 710 QKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISKGMNE--ADHRILAAEIKLGSQYYFYME 787 (854)
Q Consensus 710 ~~~A~~Aa~~V~V~y~~e~l~p~v~~~~~Al~~~~~~~~~~~~~~~~~Gd~~~a~~~--a~~~vve~~~~~~~q~H~~mE 787 (854)
+++|++|+++|+|+| |++ |+++|+++|++++++|+... .....||++++|++ ++++ ||++|++++|+|+|||
T Consensus 668 ~~~A~~Aa~~V~Vey--e~l-p~v~~~~~Al~~~a~~~~~~--~~~~~Gdv~~af~~a~a~~v-ve~~~~~~~~~H~~mE 741 (1319)
T PLN02906 668 QENAKAAARKVKVEY--EEL-PAILSIEEAIEAGSFHPNTE--RRLEKGDVELCFASGQCDRI-IEGEVQMGGQEHFYLE 741 (1319)
T ss_pred HHHHHHHhCCCEEEE--ecC-CccCCHHHHhcCCCcccCCC--ceeecCCHHHHhhccCCceE-EEEEEEECCccccccC
Confidence 999999999999999 788 88999999999888764322 13578999999998 6885 9999999999999999
Q ss_pred CCeEEEEECCC-CcEEEEeCCCChHHHHHHHHHHhCCCCCCEEEEeCCcCCCCCCCCCCcH
Q 003040 788 TQTALAVPDED-NCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGGKAIKAM 847 (854)
Q Consensus 788 p~~a~A~~~~d-g~l~V~~stQ~p~~~~~~vA~~Lglp~~kV~V~~~~~GGgFGgK~~~~~ 847 (854)
|++|+|+|++| |+|+||+|||+|+.+|..||++||||++||||+++++|||||+|.++..
T Consensus 742 p~~~~A~~~~~~g~l~v~~sTQ~p~~~r~~vA~~Lgip~~kVrV~~~~vGGgFGgK~~~~~ 802 (1319)
T PLN02906 742 PNSSLVWTSDSGNEVHMISSTQAPQKHQKYVAHVLGLPMSKVVCKTKRIGGGFGGKETRSA 802 (1319)
T ss_pred CCeEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhCCChHHeEEEeCCcccCccccccccc
Confidence 99999999977 5899999999999999999999999999999999999999999999764
No 5
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=100.00 E-value=9.1e-114 Score=904.48 Aligned_cols=467 Identities=30% Similarity=0.528 Sum_probs=413.9
Q ss_pred eeEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccC
Q 003040 11 RHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNG 90 (854)
Q Consensus 11 ~~~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g 90 (854)
.++|+|.+||+.+.+.+++|+.|||||||.+.+|||||+||+||+||||||+|++..+.. .+.+++||+|+.++.+++|
T Consensus 6 ~~~irf~lN~~~~~l~~v~P~~TlLd~LR~d~~ltGtKEGCAEGDCGACTVlVgrl~~g~-~l~yeSVNACirfl~sL~G 84 (493)
T COG4630 6 RNTIRFLLNGETRVLSDVPPTTTLLDYLRLDRRLTGTKEGCAEGDCGACTVLVGRLVDGG-SLRYESVNACIRFLGSLDG 84 (493)
T ss_pred cceeEEEecCceEEeecCCcchHHHHHHHHhcccccccccccCCCcCceEEEEEeecCCC-ceeeeehhHHHHHHhhcCC
Confidence 578999999999999999999999999999999999999999999999999999987543 2789999999999999999
Q ss_pred ceeEEecCCCCCCCCcchHhHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCcccc
Q 003040 91 CLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRC 170 (854)
Q Consensus 91 ~~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRC 170 (854)
++|+|||+|+.+++.||||||+|+++|||||||||||||||||+|+.+. +.| +.+.|+++|+||||||
T Consensus 85 ~hvvTvE~L~~~~g~LHpVQqamvd~hGSQCGfCTPGFVmSLyal~~~~-----~~P-------~~a~i~kALqGNLCRC 152 (493)
T COG4630 85 THVVTVEHLRGQDGTLHPVQQAMVDFHGSQCGFCTPGFVMSLYALWMNS-----PTP-------SRAAIEKALQGNLCRC 152 (493)
T ss_pred ceEEEehhhcCCCCCcCHHHHHHHhccCCccCCcCchHHHHHHHHHhcC-----CCC-------chhHHHHHhhCCcccc
Confidence 9999999999877779999999999999999999999999999999543 445 5899999999999999
Q ss_pred CCChhHHHHHHHhhhcc--cccc-cCCCcccccCCcccccccCCCCCCCCCcccCCCcccccccCcceeecC-CceEEec
Q 003040 171 TGYRPIADACKSFAADV--DIED-LGINSFWAKGESKEVKISRLPPYKHNGELCRFPLFLKKENSSAMLLDV-KGSWHSP 246 (854)
Q Consensus 171 tgy~~i~~a~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~-~~~~~~P 246 (854)
|||+||++|...++.-. +..| +. ..+ ......+.... ....+.+.+ ...++.|
T Consensus 153 TGY~pI~~AA~~~~a~~~~a~fDPl~-----~~R---~~~~~~L~A~~---------------~~e~v~~~~~~~r~~~P 209 (493)
T COG4630 153 TGYRPIIRAAEAIAALGPAAGFDPLA-----ARR---TAITARLRALR---------------DTETVEVGSGDDRFIVP 209 (493)
T ss_pred cCchHHHHHHHHHhccCCcccCChhh-----hhH---HHHHHHHhhcc---------------CCcEEEecCCCceeEee
Confidence 99999999999775321 1000 00 000 00000000000 012344444 6789999
Q ss_pred CCHHHHHHHHhhhcCCCCCcceEEccCccceEe--eccccCceeeeCCCcccccceEecCCcEEecccccHHHHHHHHHH
Q 003040 247 ISVQELRNVLESVEGSNQISSKLVAGNTGMGYY--KEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEALKE 324 (854)
Q Consensus 247 ~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~--k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~l~~ 324 (854)
.+++++..+++ .+|++++|||+||+++| |.......+|.+++|+||+.|++..++|+|||++||++....+..
T Consensus 210 ~~l~D~a~l~a-----a~P~AtivAGsTDvgLwVtk~mr~l~~vi~v~~l~eL~~i~~~~~~l~iGAgvt~t~a~~~la~ 284 (493)
T COG4630 210 ATLADFADLLA-----AHPGATIVAGSTDVGLWVTKQMRDLNPVIFVGHLAELRRIEVSTGGLEIGAGVTYTQAYRALAG 284 (493)
T ss_pred ccHHHHHHHHh-----hCCCCEEEecCcchhhHHHHHHhhcCCeEEecchhhhheeeecCCcEEEccCccHHHHHHHHHh
Confidence 99999999999 57999999999999996 434667889999999999999999999999999999999998765
Q ss_pred HhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCeeEEEehhhhhc-
Q 003040 325 ETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEEFLE- 403 (854)
Q Consensus 325 ~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp~~~~sD~~~~LlAldA~v~l~s~~g~R~vpl~dF~~- 403 (854)
.+|.|.+...+|||.||||+|||||||+|+||+ .|.+|+|+||||+|+|++++|+|++|++|||.
T Consensus 285 -----------~~P~l~~L~~r~gg~qvRN~gTlGGNIangSPI---GDtPPaLIALgA~ltLr~g~~~RtlPLe~~Fi~ 350 (493)
T COG4630 285 -----------RYPALGELWDRFGGEQVRNMGTLGGNIANGSPI---GDTPPALIALGATLTLRSGDGRRTLPLEDYFIA 350 (493)
T ss_pred -----------hCchHHHHHHHhcchhhhccccccccccCCCcC---CCCCchhhhcCcEEEEEecCCcccccHHHHHHH
Confidence 499999999999999999999999999999999 89999999999999999999999999999997
Q ss_pred --CCCCCCCceEEEEEcCCCCccCCcccCCCcceEEEEEEeccCCCCCccceeeeeEEEEEcCCCCCCCceeeeeEEEEc
Q 003040 404 --RPPLDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAFG 481 (854)
Q Consensus 404 --~~~L~~~Eii~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~d~a~v~~A~~v~~~~~~~~~~~~i~~~ria~G 481 (854)
++++.|||+|.+|+||.+.+ ...|.+||++|| +++||+.|.+||.+.++ +++|.++||+||
T Consensus 351 Y~kqdr~pGEfVe~v~vP~~~~----------~~rfa~yKisKR-rdeDISAv~~Af~l~Ld------g~~V~~arIa~G 413 (493)
T COG4630 351 YGKQDRQPGEFVEAVRVPLPAP----------SERFAAYKISKR-RDEDISAVCGAFALDLD------GGRVADARIAFG 413 (493)
T ss_pred hhhhccCcchhhhheecCCCCc----------chhhhhhhhhhh-ccchHHHHHhHheeeec------CCeeeeeeeecC
Confidence 78999999999999999876 578999999999 89999999999999997 469999999999
Q ss_pred ccCCCcceeHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCCCCCCC-CHHHHhHHHHHHHHHHHHHHhhhh
Q 003040 482 AFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGTS-IPAYRSSLAVGFLYEFFGSLTEMK 550 (854)
Q Consensus 482 gv~~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~~~~p~~d~~-s~eYRr~la~~L~~r~l~~~~~~~ 550 (854)
||+.+ |.|+.++|++|.||+|++++++.|+.++..++.|.+|++ |+|||+.++++|++|||++.....
T Consensus 414 GmAaT-PkRA~~~EaAL~Gk~wteatve~A~aAl~~D~tPltD~RAsaeYR~l~a~nlL~RfflEt~~~~ 482 (493)
T COG4630 414 GMAAT-PKRASEVEAALLGKPWTEATVEAAAAALAGDFTPLTDMRASAEYRALTAKNLLRRFFLETQGEA 482 (493)
T ss_pred ccccC-ccchHHHHHHHcCCCccHHHHHHHHHHHhcCCCcccchhhhHHHHHHHHHHHHHHHhhhccCCc
Confidence 99999 999999999999999999999999999999999999995 999999999999999999887654
No 6
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=100.00 E-value=2.6e-111 Score=963.94 Aligned_cols=458 Identities=30% Similarity=0.519 Sum_probs=408.8
Q ss_pred EEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccCcee
Q 003040 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLI 93 (854)
Q Consensus 14 i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i 93 (854)
|+|+|||+++++++++|+++|++|||+++||||||.||++|+||||||+|+++|+.+ ++.+++||||++|+++++|++|
T Consensus 1 i~~~~Ng~~~~~~~~~~~~~ll~~lR~~~~l~g~k~gC~~G~CGaCtv~~~~~~~~~-~~~~~~v~sCl~~~~~~~g~~i 79 (467)
T TIGR02963 1 IRFFLNGETVTLSDVDPTRTLLDYLREDAGLTGTKEGCAEGDCGACTVVVGELVDGG-KLRYRSVNACIQFLPSLDGKAV 79 (467)
T ss_pred CEEEECCEEEEeecCCCCCCHHHHHHHhcCCCCCCcccCCCCCCceEEEEEecCCCC-cccceEEehhhhhHHhcCCCEE
Confidence 579999999999669999999999999999999999999999999999999998766 8889999999999999999999
Q ss_pred EEecCCCCCCCCcchHhHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCccccCCC
Q 003040 94 TTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGY 173 (854)
Q Consensus 94 ~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRCtgy 173 (854)
+|||||++.++.+||||++|+++|++|||||||||||++++||++ +|+| |++||+++|+|||||||||
T Consensus 80 ~TvEgl~~~~~~l~~~q~a~~~~~~~QCG~CtpG~vm~~~~ll~~-----~~~~-------~~~~i~~~l~gnlCRCtgy 147 (467)
T TIGR02963 80 VTVEDLRQPDGRLHPVQQAMVECHGSQCGFCTPGFVMSLYALYKN-----SPAP-------SRADIEDALQGNLCRCTGY 147 (467)
T ss_pred EecCCCCCCCCCCCHHHHHHHHcCCCcCCCCchHHHHHHHHHHhc-----CCCC-------CHHHHHHHhcCCcccCCCC
Confidence 999999864568999999999999999999999999999999954 4666 5999999999999999999
Q ss_pred hhHHHHHHHhhhcccccccCCCcccccCCcccccccCCCCCCCCCcccCCCcccccc-cCcceeecC-CceEEecCCHHH
Q 003040 174 RPIADACKSFAADVDIEDLGINSFWAKGESKEVKISRLPPYKHNGELCRFPLFLKKE-NSSAMLLDV-KGSWHSPISVQE 251 (854)
Q Consensus 174 ~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-~~~~~~~~~-~~~~~~P~sl~e 251 (854)
++|++|++.++ +.. | +++|++.++ .+||. +... .+..+.+.+ ..+||+|+||+|
T Consensus 148 ~~i~~a~~~~~-~~~--------~-------------~~~~~~~~~-~~~~~-l~~~~~~~~~~~~~~~~~~~~P~sl~E 203 (467)
T TIGR02963 148 RPILDAAEAAF-DYP--------C-------------SDPLDADRA-PIIER-LRALRAGETVELNFGGERFIAPTTLDD 203 (467)
T ss_pred HHHHHHHHHHH-hCC--------C-------------CCcCCcchh-hhhhH-HHhcCCCcceeecCCCceEECCCCHHH
Confidence 99999995443 211 1 233444433 25633 3321 234455654 789999999999
Q ss_pred HHHHHhhhcCCCCCcceEEccCccceE-eecc-ccCceeeeCCCcccccceEecCCcEEecccccHHHHHHHHHHHhhhh
Q 003040 252 LRNVLESVEGSNQISSKLVAGNTGMGY-YKEV-EHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEALKEETKEF 329 (854)
Q Consensus 252 al~ll~~~~~~~~~~a~lvaGgT~l~~-~k~~-~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~l~~~~~~~ 329 (854)
|+++|++ ++++++|||||||++ ++.+ ..++++|||++|+||++|+.++++|+|||++||+++.+.+++
T Consensus 204 a~~ll~~-----~~~a~lvAGGTdl~~~~~~~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT~~el~~~l~~----- 273 (467)
T TIGR02963 204 LAALKAA-----HPDARIVAGSTDVGLWVTKQMRDLPDVIYVGQVAELKRIEETDDGIEIGAAVTLTDAYAALAK----- 273 (467)
T ss_pred HHHHHhh-----CCCCEEEecCcchHHHHhcCCCCCCeEEECCCChhhccEEEcCCEEEEecCCcHHHHHHHHHH-----
Confidence 9999994 588999999999988 4443 678999999999999999999999999999999999876654
Q ss_pred hhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCeeEEEehhhhhc---CCC
Q 003040 330 HSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEEFLE---RPP 406 (854)
Q Consensus 330 ~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp~~~~sD~~~~LlAldA~v~l~s~~g~R~vpl~dF~~---~~~ 406 (854)
.+|.|.+++++|||+||||+|||||||++++|+ ||++|+|+||||+|+|.+.+|+|+||++|||. ++.
T Consensus 274 ------~~p~L~~a~~~ias~qIRN~aTiGGNI~~asP~---sD~~p~LlALdA~v~l~~~~G~R~vpl~dF~~g~~kt~ 344 (467)
T TIGR02963 274 ------RYPELGELLRRFASLQIRNAGTLGGNIANGSPI---GDSPPALIALGARLTLRKGEGRRTLPLEDFFIDYGKTD 344 (467)
T ss_pred ------HhHHHHHHHHHhCCHHHcCceecccccccCCCc---hHHHHHHHHcCCEEEEEcCCCcEEEeHHHhhccccccc
Confidence 489999999999999999999999999999999 99999999999999999999999999999997 578
Q ss_pred CCCCceEEEEEcCCCCccCCcccCCCcceEEEEEEeccCCCCCccceeeeeEEEEEcCCCCCCCceeeeeEEEEcccCCC
Q 003040 407 LDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAFGAFGTK 486 (854)
Q Consensus 407 L~~~Eii~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~d~a~v~~A~~v~~~~~~~~~~~~i~~~ria~Ggv~~~ 486 (854)
|.++|||++|+||.+.. +.++.+||+++| +++|||+||+|+.++++ +++|+++||+||||+++
T Consensus 345 L~~~EiI~~I~iP~~~~----------~~~~~~~K~~~R-~~~dia~V~~A~~v~~~------~~~i~~~ria~Ggva~~ 407 (467)
T TIGR02963 345 RQPGEFVEALHVPRPTP----------GERFRAYKISKR-FDDDISAVCAAFNLELD------GGVVAEIRIAFGGMAAT 407 (467)
T ss_pred CCCCceEEEEEecCCCC----------CCceEEEEeccc-ccccceeeEEEEEEEEc------CCeEeEEEEEEecCCCC
Confidence 99999999999997654 456788999999 79999999999999996 36899999999999999
Q ss_pred cceeHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCCCCCC-CCHHHHhHHHHHHHHHHHHH
Q 003040 487 HAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGT-SIPAYRSSLAVGFLYEFFGS 545 (854)
Q Consensus 487 ~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~~~~p~~d~-~s~eYRr~la~~L~~r~l~~ 545 (854)
|+|++++|++|.||+|+++++++|++++.+++.|.+|. +|++||++|+.+|++|++.+
T Consensus 408 -p~r~~~~E~~L~G~~~~~~~l~~a~~~l~~~~~p~~d~r~sa~YR~~la~~l~~r~~~~ 466 (467)
T TIGR02963 408 -PKRAAATEAALLGKPWNEATVEAAMAALAGDFTPLSDMRASAEYRLLTAKNLLRRFFLE 466 (467)
T ss_pred -ceehHHHHHHhcCCCCCHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999887 59999999999999999976
No 7
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=100.00 E-value=2e-89 Score=836.84 Aligned_cols=407 Identities=22% Similarity=0.314 Sum_probs=351.1
Q ss_pred eEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccC-CCCCCCCccEEEEeecCCCcccCCceeecccccchhhccC
Q 003040 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLG-CGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNG 90 (854)
Q Consensus 12 ~~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~g-C~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g 90 (854)
|.|+|+|||++++++ ++|+++|+++||+ +||||+|.| |++|.||||||+| ||++|+||++|+.+++|
T Consensus 1 ~~i~~~vNg~~~~~~-~~~~~~l~~~LR~-~~~~~~k~g~c~~g~CGaCtv~~----------dg~~v~sC~~~~~~~~g 68 (956)
T PRK09800 1 MIIHFTLNGAPQELT-VNPGENVQKLLFN-MGMHSVRNSDDGFGFAGSDAIIF----------NGNIVNASLLIAAQLEK 68 (956)
T ss_pred CeEEEEECCEEEEEe-cCCCCCHHHHHHH-CCCCccccCCCCcccCCCCEEEE----------CCeEEeHHHHHHHHcCC
Confidence 569999999999997 8999999999999 999999998 8999999999999 79999999999999999
Q ss_pred ceeEEecCCCCCCCCcchHhHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCcccc
Q 003040 91 CLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRC 170 (854)
Q Consensus 91 ~~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRC 170 (854)
++|+|||||+. ++.+||+|+||+++|++|||||||||||++++||+ ++|+| |++||+++|+||||||
T Consensus 69 ~~i~Tvegl~~-~~~~~~~q~af~~~~~~QCG~CtpG~~m~~~~ll~-----~~~~p-------~~~~i~~~l~gnlCRC 135 (956)
T PRK09800 69 ADIRTAESLGK-WNELSLVQQAMVDVGVVQSGYNDPAAALIITDLLD-----RIAAP-------TREEIDDALSGLFSRD 135 (956)
T ss_pred CEEEecCCcCC-CCCCCHHHHHHHHcCCCcCCCChHHHHHHHHHHHh-----cCCCC-------CHHHHHHHHhhchhcc
Confidence 99999999985 56899999999999999999999999999999995 34666 5999999999999999
Q ss_pred CCChhHHHHHHHhhhcccccccCCCcccccCCcccccccCCCCCCCCCcccCCCcccccccCcceeecCCceEEecCCHH
Q 003040 171 TGYRPIADACKSFAADVDIEDLGINSFWAKGESKEVKISRLPPYKHNGELCRFPLFLKKENSSAMLLDVKGSWHSPISVQ 250 (854)
Q Consensus 171 tgy~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~P~sl~ 250 (854)
|||++|++|++.++...
T Consensus 136 tgy~~i~~av~~~~~~~--------------------------------------------------------------- 152 (956)
T PRK09800 136 AGWQQYYQVIELAVARK--------------------------------------------------------------- 152 (956)
T ss_pred CCcHHHHHHHHHHHHhh---------------------------------------------------------------
Confidence 99999999998643110
Q ss_pred HHHHHHhhhcCCCCCcceEEccCccceEeeccccCceeeeCCCcccccceEecCCcEEecccccHHHHHHHHHHHhhhhh
Q 003040 251 ELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEALKEETKEFH 330 (854)
Q Consensus 251 eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~l~~~~~~~~ 330 (854)
. .
T Consensus 153 ------~-------------------------~----------------------------------------------- 154 (956)
T PRK09800 153 ------N-------------------------N----------------------------------------------- 154 (956)
T ss_pred ------c-------------------------c-----------------------------------------------
Confidence 0 0
Q ss_pred hhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCeeEEEehhhhhcCCCCCCC
Q 003040 331 SEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEEFLERPPLDSR 410 (854)
Q Consensus 331 ~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp~~~~sD~~~~LlAldA~v~l~s~~g~R~vpl~dF~~~~~L~~~ 410 (854)
+. + +
T Consensus 155 ------------------------------------~~---~--------------------------------~----- 158 (956)
T PRK09800 155 ------------------------------------PQ---A--------------------------------T----- 158 (956)
T ss_pred ------------------------------------cc---c--------------------------------c-----
Confidence 00 0 0
Q ss_pred ceEEEEEcCCCCccCCcccCCCcceEEEEEEeccCCCCCccceeeeeEEEEEcCCCCCCCceeeeeEEEEcccCCCccee
Q 003040 411 SILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAFGAFGTKHAIR 490 (854)
Q Consensus 411 Eii~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~d~a~v~~A~~v~~~~~~~~~~~~i~~~ria~Ggv~~~~p~r 490 (854)
. . . .
T Consensus 159 ------------~-----------~---------~-----------------~--------------------------- 162 (956)
T PRK09800 159 ------------I-----------D---------I-----------------A--------------------------- 162 (956)
T ss_pred ------------c-----------c---------c-----------------c---------------------------
Confidence 0 0 0 0
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhhcCCCCCCCCCHHHHhHHHHHHHHHHHHHHhhhhcCCCccccCCCCCCCCcccc
Q 003040 491 ARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGTSIPAYRSSLAVGFLYEFFGSLTEMKNGISRDWLCGYSNNVSLKDS 570 (854)
Q Consensus 491 a~~~E~~L~Gk~l~~~~l~~a~~~l~~~~~p~~d~~s~eYRr~la~~L~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (854)
T Consensus 163 -------------------------------------------------------------------------------- 162 (956)
T PRK09800 163 -------------------------------------------------------------------------------- 162 (956)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccccccccCccccccccCcCCcCCCCcccccccccccccceeccccCCCCCCcEEEEEEecCCCCceecc
Q 003040 571 HVQQNHKQFDESKVPTLLSSAEQVVQLSREYYPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKG 650 (854)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~s~g~q~~~~~~~~~~iGk~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~~ 650 (854)
.+.+++++.|||+++|+|+..||||+++|++|+. +|||||++++|||++||+|++
T Consensus 163 ------------------------~~~~~~~~~VGk~~~R~d~~~kvtG~a~Y~~D~~-~pgmL~a~vvrSp~ahArI~s 217 (956)
T PRK09800 163 ------------------------PTFRDDLEVIGKHYPKTDAAKMVQAKPCYVEDRV-TADACVIKMLRSPHAHALITH 217 (956)
T ss_pred ------------------------cccccccccCCCCCCCcChHhhCcccccccccCC-CCCCEEEEEeecCCCcEEEee
Confidence 0001223568999999999999999999999997 789999999999999999999
Q ss_pred CCCCccCCCCCEEEEEEcCCCCC-----CCCCCCccccCCCcccccCCceeecCCeEEEEEeCCHHHHHHhccccEEEEe
Q 003040 651 IEFKSESVPDVVTALLSYKDIPE-----GGQNIGSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYE 725 (854)
Q Consensus 651 ID~s~A~~~PGVv~v~t~~Dip~-----~g~n~~~~~~~~d~p~~a~~~V~y~GqpIa~VvAet~~~A~~Aa~~V~V~y~ 725 (854)
||+|+|++||||++|+|++|+|. .+..++ ....+.+++++++|+|+||||++|||+|+++|++|+++|+|+|
T Consensus 218 ID~s~A~a~pGV~~Vvt~~Dvp~~~~~~~~~~~~--~~~~~~~~l~~~~Vry~G~~vaaVvAet~~~A~~A~~~V~Vey- 294 (956)
T PRK09800 218 LDVSKAEALPGVVHVITHLNCPDIYYTPGGQSAP--EPSPLDRRMFGKKMRHVGDRVAAVVAESEEIALEALKLIDVEY- 294 (956)
T ss_pred eEHHHHHhCCCeEEEEcHHHCCcccccccCcCCC--CCCCCCccccCCeEEEcCCeEEEEEECCHHHHHHHhcCCceEE-
Confidence 99999999999999999999983 111111 1112233455999999999999999999999999999999999
Q ss_pred cCCCCCCcCCHHHHHhcCCC--CcC------------------------------------CCcc---cCCCCCChhhhc
Q 003040 726 MGNLEPPILSVEEAVDRSSL--FEV------------------------------------PSFL---YPKPVGDISKGM 764 (854)
Q Consensus 726 ~e~l~p~v~~~~~Al~~~~~--~~~------------------------------------~~~~---~~~~~Gd~~~a~ 764 (854)
++| |+++|+++|++++++ |++ +.|+ .....||++++|
T Consensus 295 -e~L-p~v~d~~~Al~~~a~~vh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Nv~~~~~~~~Gd~~~af 372 (956)
T PRK09800 295 -EVL-KPVMSIDEAMAEDAPVVHDEPVVYVAGAPDTLEDDNSHAAQRGEHMIINFPIGSRPRKNIAASIHGHIGDMDKGF 372 (956)
T ss_pred -EeC-CccCCHHHHhcCCCceecccccccccccccccccccccccccccccccccccccCCCCceeeeccccCCCHHHHH
Confidence 888 899999999998874 321 1222 234679999999
Q ss_pred ccCCeeEEEEEEEECccccCCCCCCeEEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCCCEEEEeCCcCCCCCCCCC
Q 003040 765 NEADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGGKAI 844 (854)
Q Consensus 765 ~~a~~~vve~~~~~~~q~H~~mEp~~a~A~~~~dg~l~V~~stQ~p~~~~~~vA~~Lglp~~kV~V~~~~~GGgFGgK~~ 844 (854)
++|+++ ||++|++++|+|+||||++++|+|++ |+|+||+|||+|+.+|..||++||||++||||+.+++|||||+|..
T Consensus 373 ~~a~~v-ve~~y~~~~~~H~~mEp~~aiA~~d~-~~l~v~~stQ~p~~~r~~vA~~LGlp~~kVrV~~~~vGGgFG~K~~ 450 (956)
T PRK09800 373 ADADVI-IERTYNSTQAQQCPTETHICFTRMDG-DRLVIHASTQVPWHLRRQVARLVGMKQHKVHVIKERVGGGFGSKQD 450 (956)
T ss_pred hhCCEE-EEEEEEeCCcccccCCCceEEEEEeC-CeeEEEECCCcHHHHHHHHHHHHCCCHHHeEEEcCCCCccCcCccc
Confidence 999985 99999999999999999999999985 4899999999999999999999999999999999999999999997
Q ss_pred CcHH
Q 003040 845 KAMP 848 (854)
Q Consensus 845 ~~~~ 848 (854)
...+
T Consensus 451 ~~~e 454 (956)
T PRK09800 451 ILLE 454 (956)
T ss_pred ccHH
Confidence 6655
No 8
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=100.00 E-value=3.8e-87 Score=817.76 Aligned_cols=403 Identities=23% Similarity=0.348 Sum_probs=347.4
Q ss_pred EEECCEEEEEecCCCCCcHHHHHhhccCCccccc-CCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccCceeE
Q 003040 16 FAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKL-GCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLIT 94 (854)
Q Consensus 16 f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~-gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~ 94 (854)
|+|||++++++ ++|+++|+++||+. ||||+|. ||++|.||||||+| ||++|+||++|+.+++|++|+
T Consensus 1 ~~~Ng~~~~~~-~~~~~~l~~~LR~~-~l~~~k~~~c~~g~CGaCtv~~----------dg~~v~sC~~~~~~~~g~~i~ 68 (951)
T TIGR03313 1 FTLNGAPQTLE-CKLGENVQTLLFNM-GMHSVRNSDDGFGFAGSDAILF----------NGVLKNASLLIAAQLEGAEVR 68 (951)
T ss_pred CEECCEEEEEe-cCCCCCHHHHHHHC-CCCCCcCCCCCcccCCCCEEEE----------CCeEeeHHHHHHHHcCCCEEE
Confidence 78999999997 89999999999996 9999999 79999999999999 799999999999999999999
Q ss_pred EecCCCCCCCCcchHhHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCccccCCCh
Q 003040 95 TSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYR 174 (854)
Q Consensus 95 TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRCtgy~ 174 (854)
|||||+. .+.+||+|++|+++|++|||||||||||++++||++ +|+| +++||+++|+|||||||||+
T Consensus 69 Tiegl~~-~~~~~~~q~af~~~~a~QCG~CtpG~~~~~~~ll~~-----~~~p-------~~~~i~~~l~gnlcrctgy~ 135 (951)
T TIGR03313 69 TAESLGQ-WNQLSLVQQAMVDVGVVQSGYNDPAAALILTDLLDR-----NTQP-------NRAEIDDALSGLFSRDAGYQ 135 (951)
T ss_pred ecCcCCC-CCCCCHHHHHHHHcCCCcCCCChHHHHHHHHHHHhc-----CCCC-------CHHHHHHHHhcceeccCCcH
Confidence 9999985 568999999999999999999999999999999944 4666 59999999999999999999
Q ss_pred hHHHHHHHhhhcccccccCCCcccccCCcccccccCCCCCCCCCcccCCCcccccccCcceeecCCceEEecCCHHHHHH
Q 003040 175 PIADACKSFAADVDIEDLGINSFWAKGESKEVKISRLPPYKHNGELCRFPLFLKKENSSAMLLDVKGSWHSPISVQELRN 254 (854)
Q Consensus 175 ~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~P~sl~eal~ 254 (854)
+|++|++.++...
T Consensus 136 ~i~~av~~~~~~~------------------------------------------------------------------- 148 (951)
T TIGR03313 136 QFYQVIELAVKRL------------------------------------------------------------------- 148 (951)
T ss_pred HHHHHHHHHHHhc-------------------------------------------------------------------
Confidence 9999998643100
Q ss_pred HHhhhcCCCCCcceEEccCccceEeeccccCceeeeCCCcccccceEecCCcEEecccccHHHHHHHHHHHhhhhhhhhh
Q 003040 255 VLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEALKEETKEFHSEAL 334 (854)
Q Consensus 255 ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~l~~~~~~~~~~~~ 334 (854)
. +
T Consensus 149 --~-----------------------~----------------------------------------------------- 150 (951)
T TIGR03313 149 --K-----------------------D----------------------------------------------------- 150 (951)
T ss_pred --c-----------------------c-----------------------------------------------------
Confidence 0 0
Q ss_pred hhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCeeEEEehhhhhcCCCCCCCceEE
Q 003040 335 MVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEEFLERPPLDSRSILL 414 (854)
Q Consensus 335 ~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp~~~~sD~~~~LlAldA~v~l~s~~g~R~vpl~dF~~~~~L~~~Eii~ 414 (854)
+. +
T Consensus 151 --------------------------------~~---~------------------------------------------ 153 (951)
T TIGR03313 151 --------------------------------PE---H------------------------------------------ 153 (951)
T ss_pred --------------------------------cc---c------------------------------------------
Confidence 00 0
Q ss_pred EEEcCCCCccCCcccCCCcceEEEEEEeccCCCCCccceeeeeEEEEEcCCCCCCCceeeeeEEEEcccCCCcceeHHHH
Q 003040 415 SVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAFGAFGTKHAIRARRV 494 (854)
Q Consensus 415 ~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~d~a~v~~A~~v~~~~~~~~~~~~i~~~ria~Ggv~~~~p~ra~~~ 494 (854)
+.. . +
T Consensus 154 --------------------------~~~-~-----------------~------------------------------- 158 (951)
T TIGR03313 154 --------------------------KQS-I-----------------A------------------------------- 158 (951)
T ss_pred --------------------------ccc-c-----------------c-------------------------------
Confidence 000 0 0
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhhcCCCCCCCCCHHHHhHHHHHHHHHHHHHHhhhhcCCCccccCCCCCCCCcccccccc
Q 003040 495 EEFLTGKVLNFGVLYEAIKLLRDSVVPEDGTSIPAYRSSLAVGFLYEFFGSLTEMKNGISRDWLCGYSNNVSLKDSHVQQ 574 (854)
Q Consensus 495 E~~L~Gk~l~~~~l~~a~~~l~~~~~p~~d~~s~eYRr~la~~L~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (854)
|
T Consensus 159 --------------------------~----------------------------------------------------- 159 (951)
T TIGR03313 159 --------------------------P----------------------------------------------------- 159 (951)
T ss_pred --------------------------C-----------------------------------------------------
Confidence 0
Q ss_pred ccccccccccccccCccccccccCcCCcCCCCcccccccccccccceeccccCCCCCCcEEEEEEecCCCCceeccCCCC
Q 003040 575 NHKQFDESKVPTLLSSAEQVVQLSREYYPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFK 654 (854)
Q Consensus 575 ~~~~~~~~~~~~~~s~g~q~~~~~~~~~~iGk~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~~ID~s 654 (854)
..+++++.|||+++|+|+..||||+++|++|+. +|||||++++|||++||+|++||+|
T Consensus 160 ---------------------~~~~~~~~iGk~~~R~d~~~kvtG~a~Y~~D~~-~pgmL~a~v~rSP~ahArI~sID~s 217 (951)
T TIGR03313 160 ---------------------EFRDDLTIIGKNCPKIDAAKMVQAKPCYVEDRV-PADACVIKMLRSPHPHAWITHLDVS 217 (951)
T ss_pred ---------------------ccccccccCCCCCcCcChHhhCccCccccccCC-CCCCEEEEEEecCCCcEEEEeeEHH
Confidence 001223468999999999999999999999997 7999999999999999999999999
Q ss_pred ccCCCCCEEEEEEcCCCCC-----CCCCCCccccCCCcccccCCceeecCCeEEEEEeCCHHHHHHhccccEEEEecCCC
Q 003040 655 SESVPDVVTALLSYKDIPE-----GGQNIGSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNL 729 (854)
Q Consensus 655 ~A~~~PGVv~v~t~~Dip~-----~g~n~~~~~~~~d~p~~a~~~V~y~GqpIa~VvAet~~~A~~Aa~~V~V~y~~e~l 729 (854)
+|++||||++|+|++|+|. .+.+.+ ....+.++|++++|+|+||||++|||+|+|+|++|+++|+|+| ++|
T Consensus 218 ~A~a~pGV~~Vvt~~D~p~~~~~~~~~~~~--~~~~~~~~l~~~~Vry~G~~vaaVvAet~~~A~~A~~~I~Vey--e~L 293 (951)
T TIGR03313 218 KAEALPGVVHVITHLNCPDIYYTPGGQSAP--EPSPLDRRMFGQKMRHVGDRVAAVVAESEEIALHALKLIEVEY--DVL 293 (951)
T ss_pred HHHhCCCeEEEEeHHHCCccccCCCCccCC--CCCCCcccccCCeEEEcCCEEEEEEECCHHHHHHHhcCCeeEE--EeC
Confidence 9999999999999999982 111111 0112344568899999999999999999999999999999999 888
Q ss_pred CCCcCCHHHHHhcCCC--CcCC------------------------------------Ccc---cCCCCCChhhhcccCC
Q 003040 730 EPPILSVEEAVDRSSL--FEVP------------------------------------SFL---YPKPVGDISKGMNEAD 768 (854)
Q Consensus 730 ~p~v~~~~~Al~~~~~--~~~~------------------------------------~~~---~~~~~Gd~~~a~~~a~ 768 (854)
|+++|+++|++++++ |+.. .|+ .....||++++|++|+
T Consensus 294 -p~v~d~~~Al~~~ap~ih~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Nv~~~~~~~~Gd~~~af~~A~ 372 (951)
T TIGR03313 294 -TPVMSIDEAMAAEAPIVHDEPIVYGAGAPDDLEEQNANADPRGEHMIINFPIGSRPRKNIAASVHGHIGDLNKGFAEAD 372 (951)
T ss_pred -CccCCHHHHhcCCCCeeccccccccccccccccccccccccccccccccccccccCCCceeeeccccCCCHHHHHhcCC
Confidence 899999999988874 3210 111 1246799999999999
Q ss_pred eeEEEEEEEECccccCCCCCCeEEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCCCEEEEeCCcCCCCCCCCCCcHH
Q 003040 769 HRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGGKAIKAMP 848 (854)
Q Consensus 769 ~~vve~~~~~~~q~H~~mEp~~a~A~~~~dg~l~V~~stQ~p~~~~~~vA~~Lglp~~kV~V~~~~~GGgFGgK~~~~~~ 848 (854)
++ ||++|++++|+|+||||++|+|+|++ |+|+||+|||+|+.+|..||++||||++||||+.+++|||||+|......
T Consensus 373 ~v-ve~~y~~~~~~H~~mEp~~aiA~~d~-~~l~V~~stQ~p~~~r~~vA~~Lglp~~kVrV~~~~vGGgFG~K~~~~~e 450 (951)
T TIGR03313 373 VI-IERTYESTQAQQCPTETHICFTYMDG-ERLVIHASTQVPWHVRRQVARIVGMKQHKVHVIKERVGGGFGSKQDILLE 450 (951)
T ss_pred EE-EEEEEEECCEeeecCCCceEEEEEcC-CeEEEEECCcCHHHHHHHHHHHHCCCHHHeEEEcCCCCcCcCCcccccHH
Confidence 85 99999999999999999999999985 48999999999999999999999999999999999999999999876655
No 9
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=100.00 E-value=6.5e-87 Score=811.10 Aligned_cols=399 Identities=35% Similarity=0.564 Sum_probs=345.0
Q ss_pred EEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccCcee
Q 003040 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLI 93 (854)
Q Consensus 14 i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i 93 (854)
++|+|||+. ++ ++|+++|+++||+++||||+|.||++|.||||||+| |+++||||++|+.+++|++|
T Consensus 1 ~~~~~ng~~--~~-~~~~~~l~~~lr~~~~~~~~k~gc~~g~cgactv~~----------dg~~~~sc~~~~~~~~g~~i 67 (848)
T TIGR03311 1 YEFIVNGRE--VD-VNEEKKLLEFLREDLRLTGVKNGCGEGACGACTVIV----------NGKAVRACRFTTAKLAGKEI 67 (848)
T ss_pred CEEEECCEE--ee-CCCCCcHHHHHHHhcCCCcCCCCCCCCCCCCcEEEE----------CCeEEehhhhhHHhcCCCEE
Confidence 369999984 43 679999999999999999999999999999999999 79999999999999999999
Q ss_pred EEecCCCCCCCCcchHhHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCccccCCC
Q 003040 94 TTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGY 173 (854)
Q Consensus 94 ~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRCtgy 173 (854)
+|||||++ ..+||+|+||+++|++|||||||||||++++||++ +|+| ++++|+++|+|||||||||
T Consensus 68 ~T~egl~~--~~~~~~q~a~~~~~~~qcG~ctpg~~~~~~~ll~~-----~~~p-------~~~~i~~~l~gnlcrctgy 133 (848)
T TIGR03311 68 TTVEGLTE--REKDVYAWAFAKAGAVQCGFCIPGMVISAKALLDK-----NPNP-------TEAEIKKALKGNICRCTGY 133 (848)
T ss_pred EecCCCCC--CCCCHHHHHHHHcCCCcCCCCchhHHHHHHHHHhc-----CCCC-------CHHHHHHHHhcCccccCCh
Confidence 99999985 34799999999999999999999999999999943 4666 5999999999999999999
Q ss_pred hhHHHHHHHhhhcccccccCCCcccccCCcccccccCCCCCCCCCcccCCCcccccccCcceeecCCceEEecCCHHHHH
Q 003040 174 RPIADACKSFAADVDIEDLGINSFWAKGESKEVKISRLPPYKHNGELCRFPLFLKKENSSAMLLDVKGSWHSPISVQELR 253 (854)
Q Consensus 174 ~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~P~sl~eal 253 (854)
++|++|++.++..
T Consensus 134 ~~i~~a~~~~~~~------------------------------------------------------------------- 146 (848)
T TIGR03311 134 VKIIKAVRLAAKA------------------------------------------------------------------- 146 (848)
T ss_pred HHHHHHHHHHHHh-------------------------------------------------------------------
Confidence 9999999854210
Q ss_pred HHHhhhcCCCCCcceEEccCccceEeeccccCceeeeCCCcccccceEecCCcEEecccccHHHHHHHHHHHhhhhhhhh
Q 003040 254 NVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEALKEETKEFHSEA 333 (854)
Q Consensus 254 ~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~l~~~~~~~~~~~ 333 (854)
++ .
T Consensus 147 --~~-----------------------~---------------------------------------------------- 149 (848)
T TIGR03311 147 --FR-----------------------E---------------------------------------------------- 149 (848)
T ss_pred --hc-----------------------c----------------------------------------------------
Confidence 00 0
Q ss_pred hhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCeeEEEehhhhhcCCCCCCCceE
Q 003040 334 LMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEEFLERPPLDSRSIL 413 (854)
Q Consensus 334 ~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp~~~~sD~~~~LlAldA~v~l~s~~g~R~vpl~dF~~~~~L~~~Eii 413 (854)
.+ +
T Consensus 150 --------------------------------~~----~----------------------------------------- 152 (848)
T TIGR03311 150 --------------------------------EI----E----------------------------------------- 152 (848)
T ss_pred --------------------------------cc----c-----------------------------------------
Confidence 00 0
Q ss_pred EEEEcCCCCccCCcccCCCcceEEEEEEeccCCCCCccceeeeeEEEEEcCCCCCCCceeeeeEEEEcccCCCcceeHHH
Q 003040 414 LSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAFGAFGTKHAIRARR 493 (854)
Q Consensus 414 ~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~d~a~v~~A~~v~~~~~~~~~~~~i~~~ria~Ggv~~~~p~ra~~ 493 (854)
. . .
T Consensus 153 ---------~---------------------~----------------------------------------~------- 155 (848)
T TIGR03311 153 ---------P---------------------P----------------------------------------R------- 155 (848)
T ss_pred ---------c---------------------c----------------------------------------c-------
Confidence 0 0 0
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhhcCCCCCCCCCHHHHhHHHHHHHHHHHHHHhhhhcCCCccccCCCCCCCCccccccc
Q 003040 494 VEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGTSIPAYRSSLAVGFLYEFFGSLTEMKNGISRDWLCGYSNNVSLKDSHVQ 573 (854)
Q Consensus 494 ~E~~L~Gk~l~~~~l~~a~~~l~~~~~p~~d~~s~eYRr~la~~L~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (854)
T Consensus 156 -------------------------------------------------------------------------------- 155 (848)
T TIGR03311 156 -------------------------------------------------------------------------------- 155 (848)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccccccCccccccccCcCCcCCCCcccccccccccccceeccccCCCCCCcEEEEEEecCCCCceeccCCC
Q 003040 574 QNHKQFDESKVPTLLSSAEQVVQLSREYYPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEF 653 (854)
Q Consensus 574 ~~~~~~~~~~~~~~~s~g~q~~~~~~~~~~iGk~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~~ID~ 653 (854)
. + +. ..|||+++|+|+..||||+++|++|+. +|||||++++|||++||+|++||+
T Consensus 156 ---------~------------~-~~--~~iG~~~~R~d~~~kvtG~~~Y~~Di~-~pgmL~a~~vrSp~ahA~I~~ID~ 210 (848)
T TIGR03311 156 ---------G------------E-PK--GKLGENFPRVDAVPKVLGEGVYVDDMQ-IEGMLYGSALRSKYPRALVKSIDI 210 (848)
T ss_pred ---------c------------c-cc--CCCCCccCCcChhhhCcccccccccCC-CCCCEEEEEEeCCCCCEEEEeeEH
Confidence 0 0 00 137999999999999999999999997 799999999999999999999999
Q ss_pred CccCCCCCEEEEEEcCCCCCCCCC-CCccccCCCcc-ccc-CCceeecCCeEEEEEeCCHHHHHHhccccEEEEecCCCC
Q 003040 654 KSESVPDVVTALLSYKDIPEGGQN-IGSKTIFGSEP-LFA-DELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLE 730 (854)
Q Consensus 654 s~A~~~PGVv~v~t~~Dip~~g~n-~~~~~~~~d~p-~~a-~~~V~y~GqpIa~VvAet~~~A~~Aa~~V~V~y~~e~l~ 730 (854)
|+|++||||++|+|++|+| +.+ ++. ...++| +|+ +++|+|+|||||+|+|+|+++|++|+++|+|+| +++
T Consensus 211 s~A~a~PGV~aVvt~~Dip--~~~~~g~--~~~~~~~~~a~~~~Vry~Ge~VA~VvA~t~~~A~~A~~~V~Vey--e~l- 283 (848)
T TIGR03311 211 TVALKHPGVVAVLTAKDIP--GNRKIGH--IFKDWPALIAVGEITRYVGDAVALVAAKSKEALREALNLIKVDY--EEL- 283 (848)
T ss_pred HHHHhCCCcEEEEeHHHCC--CccCCCC--CCCCccccccCCCEEEEcCCeEEEEEECCHHHHHHHhCCCcEEE--ecC-
Confidence 9999999999999999998 432 332 223454 343 589999999999999999999999999999999 888
Q ss_pred CCcCCHHHHHhcCCC--CcCCCcc---cCCCCCChhhhcccCCeeEEEEEEEECccccCCCCCCeEEEEECCCCcEEEEe
Q 003040 731 PPILSVEEAVDRSSL--FEVPSFL---YPKPVGDISKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYS 805 (854)
Q Consensus 731 p~v~~~~~Al~~~~~--~~~~~~~---~~~~~Gd~~~a~~~a~~~vve~~~~~~~q~H~~mEp~~a~A~~~~dg~l~V~~ 805 (854)
|+++|+++|+++++. |+ ..|+ .....||++++|++|+++ ||++|++++|+|+||||++++|+|++ |+|+||+
T Consensus 284 p~v~d~~~A~~~~a~~i~~-~~Nv~~~~~~~~Gdv~~af~~A~~v-ve~~y~~~~~~h~~mEp~~~vA~~~~-~~l~v~~ 360 (848)
T TIGR03311 284 PPLTSPEEALAEGAPAIHP-KGNILSEEHVVRGDAEEALENSAYV-VTNHYSTPFTEHAFLEPESALAVPEG-DGVIIYT 360 (848)
T ss_pred CCcCCHHHHhcCCCCeECC-CCCCcceeeecCCCHHHHhhcCCeE-EEEEEEECCEeeeecCCceEEEEEeC-CeEEEEE
Confidence 899999999988763 43 2332 235789999999999985 99999999999999999999999985 4699999
Q ss_pred CCCChHHHHHHHHHHhCCCCCCEEEEeCCcCCCCCCCCCCcHHHHhc
Q 003040 806 SIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGGKAIKAMPVSIS 852 (854)
Q Consensus 806 stQ~p~~~~~~vA~~Lglp~~kV~V~~~~~GGgFGgK~~~~~~~a~a 852 (854)
|||+|+.+|..+|++||||++||||+.+++|||||+|.+......++
T Consensus 361 stQ~p~~~r~~vA~~Lglp~~~VrV~~~~vGGgFG~K~~~~~~~~aA 407 (848)
T TIGR03311 361 STQGVYDEQRELASLLGLPKEKIRVINKFVGGGFGGKEDMSVQHHAA 407 (848)
T ss_pred CCcCHHHHHHHHHHHhCCChHHEEEEeCCCCCcCCccccccHHHHHH
Confidence 99999999999999999999999999999999999999976554433
No 10
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=100.00 E-value=1.5e-55 Score=478.60 Aligned_cols=274 Identities=23% Similarity=0.286 Sum_probs=249.3
Q ss_pred eEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceE-eecc-ccCceeeeCCCcccccceEec-CCcEEecccccHHHH
Q 003040 242 SWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGY-YKEV-EHYDKYIDIRYIPELSVIRRD-QTGIEIGATVTISKA 318 (854)
Q Consensus 242 ~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~-~k~~-~~~~~lIdl~~I~EL~~I~~~-~~~l~IGA~vTl~~l 318 (854)
+|++|+|++||+++|++ ++++++|||||+|++ ++.+ ..|+++|||++|+||++|+.. +++|+|||+|||++|
T Consensus 6 ~~~~P~sl~Ea~~ll~~-----~~~a~ivaGGTdl~~~~~~~~~~p~~lIdl~~i~eL~~I~~~~~~~l~IGA~vt~~~l 80 (291)
T PRK09971 6 EYHEAATLEEAIELLAD-----NPQAKLIAGGTDVLIQLHHHNDRYRHLVSIHNIAELRGITLAEDGSIRIGAATTFTQI 80 (291)
T ss_pred ceeCCCCHHHHHHHHHh-----CCCCEEEeccchHHHHHhCCCCCCCeEEEcCCChhhhCeEecCCCEEEEEeCCcHHHH
Confidence 89999999999999994 578999999999988 4554 678999999999999999965 577999999999999
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCeeEEEeh
Q 003040 319 IEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLML 398 (854)
Q Consensus 319 ~~~l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp~~~~sD~~~~LlAldA~v~l~s~~g~R~vpl 398 (854)
+++- . ..+.+|.|.+++++||++||||+||||||||+++|. ||++|+|+||||+|+|.+.+|+|+||+
T Consensus 81 ~~~~--~-------i~~~~p~L~~a~~~ia~~qIRN~aTiGGNi~~a~p~---sD~~~~Llal~A~v~i~~~~g~R~vp~ 148 (291)
T PRK09971 81 IEDP--I-------IQKHLPALAEAAVSIGGPQIRNVATIGGNICNGATS---ADSAPPLFALDAKLEIHSPNGVRFVPI 148 (291)
T ss_pred hcCh--H-------HHHHhHHHHHHHHHhCCHHHhcceecccccccCCcc---hhHHHHHHHcCCEEEEEcCCCcEEEEH
Confidence 8741 1 123589999999999999999999999999999999 999999999999999999999999999
Q ss_pred hhhhc---CCCCCCCceEEEEEcCCCCccCCcccCCCcceEEEEEEeccCCCCCccceeeeeEEEEEcCCCCCCCceeee
Q 003040 399 EEFLE---RPPLDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNN 475 (854)
Q Consensus 399 ~dF~~---~~~L~~~Eii~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~d~a~v~~A~~v~~~~~~~~~~~~i~~ 475 (854)
+|||. ++.|.++|||++|.||.+... +..+.+||+.+| +++|||+||+|+.++++ +++|++
T Consensus 149 ~df~~g~~~t~l~~~Eil~~I~iP~~~~~---------~~~~~~~K~~~R-~~~~~a~v~~a~~~~~~------~g~i~~ 212 (291)
T PRK09971 149 NGFYTGPGKVSLEHDEILVAFIIPPEPYE---------HAGGAYIKYAMR-DAMDIATIGCAVLCRLD------NGNFED 212 (291)
T ss_pred HHhcCCccccccCCCceEEEEEeCCCCCC---------CCceEEEEEccc-chhhHhHheeEEEEEEc------CCEEEE
Confidence 99997 578999999999999975431 345667899999 79999999999999985 468999
Q ss_pred eEEEEcccCCCcceeHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCCCCCC-CCHHHHhHHHHHHHHHHHHHHhhh
Q 003040 476 CRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGT-SIPAYRSSLAVGFLYEFFGSLTEM 549 (854)
Q Consensus 476 ~ria~Ggv~~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~~~~p~~d~-~s~eYRr~la~~L~~r~l~~~~~~ 549 (854)
+||+|||++++ |+|+.++|++|.|+.|++++++++.+.+.+++.|.+|. +|++||++|+.+|++|++.++..+
T Consensus 213 ~ria~G~v~~~-p~r~~~~E~~L~G~~~~~~~~~~a~~~~~~~~~p~~d~~~s~~YR~~l~~~l~~r~l~~~~~~ 286 (291)
T PRK09971 213 LRLAFGVAAPT-PIRCQHAEQTAKGAPLNLETLEAIGELVLQDVAPRSSWRASKEFRLHLIQELTKRVIKEAVAA 286 (291)
T ss_pred EEEEEEcccCc-eeeHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999999999999999987 699999999999999999998765
No 11
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=100.00 E-value=2e-55 Score=422.30 Aligned_cols=147 Identities=38% Similarity=0.669 Sum_probs=139.0
Q ss_pred EEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccCcee
Q 003040 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLI 93 (854)
Q Consensus 14 i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i 93 (854)
|+|+|||++++++ ++|+++|+||||+++||||+|.||++|.||||||+| |+++|+||++|+.+++|++|
T Consensus 2 i~~~vNG~~~~~~-~~~~~~Ll~~LR~~lgltg~K~gC~~G~CGACtVlv----------dg~~v~SCl~~~~~~~G~~V 70 (148)
T TIGR03193 2 LRLTVNGRWREDA-VADNMLLVDYLRDTVGLTGTKQGCDGGECGACTVLV----------DGRPRLACSTLAHRVAGRKV 70 (148)
T ss_pred EEEEECCEEEEee-cCCCCcHHHHHHHhcCCCCCCCCCCCCCCCCCEEEE----------CCeEeeccHhhHhhcCCCcE
Confidence 7899999999996 899999999999999999999999999999999999 79999999999999999999
Q ss_pred EEecCCCCCCCCcchHhHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCccccCCC
Q 003040 94 TTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGY 173 (854)
Q Consensus 94 ~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRCtgy 173 (854)
+|||||++ .+.+||+|+||+++|++|||||||||||++++||++ +|+| +++||+++|+|||||||||
T Consensus 71 ~TiEgl~~-~~~l~pvq~af~~~~a~QCGfCtPG~vms~~~ll~~-----~p~p-------s~~ei~~al~GnLCRCTGY 137 (148)
T TIGR03193 71 ETVEGLAT-NGRLSRLQQAFHERLGTQCGFCTPGMIMAAEALLRR-----NPSP-------SRDEIRAALAGNLCRCTGY 137 (148)
T ss_pred EEeCCCCC-CCCCCHHHHHHHHcCCCcCCCCCccHHHHHHHHHHc-----CCCC-------CHHHHHHHHcCCccCCCCC
Confidence 99999986 568999999999999999999999999999999943 4666 5999999999999999999
Q ss_pred hhHHHHHHHhh
Q 003040 174 RPIADACKSFA 184 (854)
Q Consensus 174 ~~i~~a~~~~~ 184 (854)
++|++|++.++
T Consensus 138 ~~I~~Av~~aa 148 (148)
T TIGR03193 138 VKIIESVEAAA 148 (148)
T ss_pred HHHHHHHHHhC
Confidence 99999998753
No 12
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=100.00 E-value=1.2e-54 Score=420.95 Aligned_cols=151 Identities=40% Similarity=0.682 Sum_probs=139.2
Q ss_pred eeEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccC
Q 003040 11 RHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNG 90 (854)
Q Consensus 11 ~~~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g 90 (854)
.+.|+|+|||+.++++ ++|+++|+||||+. ||||||.||++|+||||||+| |+++||||++|+.+++|
T Consensus 6 ~~~i~~~vNG~~~~~~-~~~~~~Ll~~LR~~-gltgtK~GC~~G~CGACtVlv----------dg~~v~SCl~~a~~~~G 73 (159)
T PRK09908 6 TITIECTINGMPFQLH-AAPGTPLSELLREQ-GLLSVKQGCCVGECGACTVLV----------DGTAIDSCLYLAAWAEG 73 (159)
T ss_pred ceeEEEEECCEEEEEe-cCCCCcHHHHHHHc-CCCCCCCCcCCCCCCCcEEEE----------CCcEeehhHhhHHHhCC
Confidence 4579999999999996 89999999999985 999999999999999999999 79999999999999999
Q ss_pred ceeEEecCCCCCCCCcchHhHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCcccc
Q 003040 91 CLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRC 170 (854)
Q Consensus 91 ~~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRC 170 (854)
++|+|||||++ .+.+||+|+||+++|++|||||||||||++++||++ +|.| .++++||+++|+||||||
T Consensus 74 ~~V~TiEGl~~-~~~l~pvQ~Af~~~~a~QCGyCtPG~ims~~aLl~~-----~~~~-----~~s~~eI~~al~GNlCRC 142 (159)
T PRK09908 74 KEIRTLEGEAK-GGKLSHVQQAYAKSGAVQCGFCTPGLIMATTAMLAK-----PREK-----PLTITEIRRGLAGNLCRC 142 (159)
T ss_pred CEEEeecCCCC-CCCCCHHHHHHHHcCCCcCCCCCccHHHHHHHHHHc-----CCCC-----CCCHHHHHHHHcCCccCC
Confidence 99999999986 568999999999999999999999999999999954 3422 136999999999999999
Q ss_pred CCChhHHHHHHHhh
Q 003040 171 TGYRPIADACKSFA 184 (854)
Q Consensus 171 tgy~~i~~a~~~~~ 184 (854)
|||++|++|++.+.
T Consensus 143 TGY~~I~~Av~~~~ 156 (159)
T PRK09908 143 TGYQMIVNTVLDCE 156 (159)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999998753
No 13
>TIGR03198 pucE xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.
Probab=100.00 E-value=1.4e-53 Score=413.18 Aligned_cols=148 Identities=36% Similarity=0.734 Sum_probs=139.7
Q ss_pred eEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccCc
Q 003040 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGC 91 (854)
Q Consensus 12 ~~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g~ 91 (854)
..|+|+|||+++++. ++|+++|++|||++++|+|||.||++|.||||||+| |+++|+||++|+.+++|+
T Consensus 2 ~~i~f~vNG~~~~~~-~~~~~~Ll~~LR~~~~ltgtK~gC~~G~CGACtVlv----------dG~~v~SCl~~~~~~~G~ 70 (151)
T TIGR03198 2 EQFRFTVNGQAWEVA-AVPTTRLSDLLRKELQLTGTKVSCGIGRCGACSVLI----------DGKLANACLTMAYQADGH 70 (151)
T ss_pred ccEEEEECCEEEEee-cCCCcHHHHHHHhccCCCCCCCCCCCCcCCccEEEE----------CCcEEechHHHHHHhcCC
Confidence 358999999999997 799999999999999999999999999999999999 789999999999999999
Q ss_pred eeEEecCCCCCCCCcchHhHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCccccC
Q 003040 92 LITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCT 171 (854)
Q Consensus 92 ~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRCt 171 (854)
+|+|||||+. +.+||+|+||+++|++|||||||||||++++||++ +|+| |++||+++|+|||||||
T Consensus 71 ~v~TiEgl~~--~~l~pvQ~af~~~~a~QCGfCtpG~im~~~~ll~~-----~p~p-------~~~ei~~al~gnlCRCt 136 (151)
T TIGR03198 71 EITTIEGIAE--NELDPCQTAFLEEGGFQCGYCTPGMVVALKALFRE-----TPQP-------SDEDMEEGLSGNLCRCT 136 (151)
T ss_pred EEEecCCcCC--CCCCHHHHHHHHcCCCcCCCCCccHHHHHHHHHHc-----CCCC-------CHHHHHHHHcCCCcCCC
Confidence 9999999973 57999999999999999999999999999999953 4666 59999999999999999
Q ss_pred CChhHHHHHHHhh
Q 003040 172 GYRPIADACKSFA 184 (854)
Q Consensus 172 gy~~i~~a~~~~~ 184 (854)
||++|++|+++++
T Consensus 137 gY~~I~~Av~~~~ 149 (151)
T TIGR03198 137 GYGGIIRSACRIR 149 (151)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999876
No 14
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=100.00 E-value=1.5e-53 Score=408.21 Aligned_cols=152 Identities=45% Similarity=0.812 Sum_probs=144.0
Q ss_pred eeEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccC
Q 003040 11 RHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNG 90 (854)
Q Consensus 11 ~~~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g 90 (854)
++.|+|+|||++++++ ++|+++|+|+||++++|||+|.||+.|.||||||+| ||++|+||++|+++++|
T Consensus 1 ~~~i~ltvNG~~~~~~-~~p~~~Ll~~LRd~l~ltgtk~GC~~g~CGACtVlv----------DG~~v~SCl~~a~~~~G 69 (156)
T COG2080 1 KMPITLTVNGEPVELD-VDPRTPLLDVLRDELGLTGTKKGCGHGQCGACTVLV----------DGEAVNSCLTLAVQAEG 69 (156)
T ss_pred CCcEEEEECCeEEEEE-eCCCChHHHHHHHhcCCCCcCCCCCCccCCceEEEE----------CCeEehHHHHHHHHhCC
Confidence 3689999999999998 899999999999999999999999999999999999 89999999999999999
Q ss_pred ceeEEecCCCCCCCCcchHhHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCcccc
Q 003040 91 CLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRC 170 (854)
Q Consensus 91 ~~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRC 170 (854)
++|+|||||+..+..|||+|+||++++++|||||||||||++++||++ +|.| |++||+++|+||||||
T Consensus 70 ~~ItTiEGl~~~~~~l~~vQ~Af~e~~~~QCGyCtpG~Imsa~~lL~~-----~~~p-------s~~eI~~~lsGnlCRC 137 (156)
T COG2080 70 AEITTIEGLAKKDGGLHPVQQAFLEHDAFQCGYCTPGQIMSATALLDR-----NPAP-------TDEEIREALSGNLCRC 137 (156)
T ss_pred CeEEEeecccCCCCCcCHHHHHHHHcCCCcCCCCcHHHHHHHHHHHHh-----CCCC-------CHHHHHHHHhcCcccc
Confidence 999999999965677899999999999999999999999999999954 4666 5999999999999999
Q ss_pred CCChhHHHHHHHhhh
Q 003040 171 TGYRPIADACKSFAA 185 (854)
Q Consensus 171 tgy~~i~~a~~~~~~ 185 (854)
|||..|++|++.++.
T Consensus 138 t~Y~~I~~Ai~~aa~ 152 (156)
T COG2080 138 TGYQNIVAAILDAAE 152 (156)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998764
No 15
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=100.00 E-value=3e-52 Score=453.84 Aligned_cols=274 Identities=21% Similarity=0.254 Sum_probs=240.3
Q ss_pred CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceE-eecc-ccCceeeeCCCcccccceEecCCcEEecccccHHH
Q 003040 240 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGY-YKEV-EHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISK 317 (854)
Q Consensus 240 ~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~-~k~~-~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~ 317 (854)
.|+|++|+|++||+++|++ ++++++++|||+|++ ++.+ ..|+++|||++|+||++|+.++++|+|||+|||++
T Consensus 4 ~f~~~~P~sl~eA~~ll~~-----~~~a~ivaGGTdl~~~~~~~~~~p~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~~ 78 (321)
T TIGR03195 4 DFRTLRPASLADAVAALAA-----HPAARPLAGGTDLLPNLRRGLGQPETLVDLTGIDEIAQLSTLADGLRIGAGVTLAA 78 (321)
T ss_pred CceEECCCCHHHHHHHHhh-----CCCCEEEEccchHHHHHhcccCCCCeEEECCCChhhccEEecCCEEEEeccCcHHH
Confidence 5899999999999999994 578999999999988 4443 67899999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccC------------------------------
Q 003040 318 AIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQR------------------------------ 367 (854)
Q Consensus 318 l~~~l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp------------------------------ 367 (854)
|+++.. ....+|.|.++++.||++||||+||||||||+++|
T Consensus 79 l~~~~~---------i~~~~p~L~~a~~~ias~qIRN~aTiGGNi~~~~~c~~~~~~~~~~~~~~~c~~~~~~~c~~~~~ 149 (321)
T TIGR03195 79 LAEDAL---------VRTRWPALAQAARAVAGPTHRAAATLGGNLCLDTRCIYYNQSEWWRSGNGYCLKYRGDKCHVAPK 149 (321)
T ss_pred HhhChh---------hHhHhHHHHHHHHHhCCHHHhCceecHHhhhccCCCcccccccccccccccccccCCccccccCC
Confidence 988621 12258999999999999999999999999996443
Q ss_pred -----CCCCCchHHHHHhcCcEEEEEeCCeeEEEehhhhhc-----CCCCCCCceEEEEEcCCCCccCCcccCCCcceEE
Q 003040 368 -----KHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEEFLE-----RPPLDSRSILLSVEIPCWDLTRNVTSETNSVLLF 437 (854)
Q Consensus 368 -----~~~~sD~~~~LlAldA~v~l~s~~g~R~vpl~dF~~-----~~~L~~~Eii~~I~iP~~~~~~~~~~~~~~~~~~ 437 (854)
+.++||++|+|+||||+|+|.+.+|+|+||++|||. ++.|.++|||++|+||... ...+
T Consensus 150 ~~~c~a~p~sD~~~~LlAldA~v~i~~~~g~R~vpl~dF~~~~g~~~t~L~~~Eiit~I~iP~~~-----------~~~~ 218 (321)
T TIGR03195 150 SDRCYAAFSGDVAPALLVLDAEAEIVGPAGVRRVPLAELYVEDGAAHLTLEPGEVLAAVRVPPTG-----------GWTS 218 (321)
T ss_pred CccccCCCchHHHHHHHHcCCEEEEEeCCccEEEEHHHHhcccCCccccCCCCCeEEEEEecCCC-----------CCcc
Confidence 123489999999999999999999999999999997 3689999999999999643 2333
Q ss_pred EEEEeccCCCCCccceeeeeEEEEEcCCCCCCCceeeeeEEEEcccCCCcceeHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 003040 438 ETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRD 517 (854)
Q Consensus 438 ~~~K~~~R~~~~d~a~v~~A~~v~~~~~~~~~~~~i~~~ria~Ggv~~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~ 517 (854)
.++|+.+| ...||+++++|+.++.+ +++|+++||+|||++++ |+|++++ ++|.|+.|+++++++|.+++.+
T Consensus 219 ~y~k~~~r-~a~~~~~~~vav~l~~~------~~~i~~~ria~Ggva~~-p~r~~~~-e~l~G~~~~~~~~~~a~~~~~~ 289 (321)
T TIGR03195 219 AYSKVRVR-GAIDFPLAGVAVALQRD------GDRIAGLRVALTGTNSR-PLMVPGT-DALAGRPLDDAAAEEIARLVRK 289 (321)
T ss_pred EEEEEecC-ccccceeEEEEEEEEeC------CCeEEEEEEEEECccCc-eeehHHH-HHhcCCCCCHHHHHHHHHHHHh
Confidence 44555555 78899999999888875 46899999999999999 9999999 5589999999999999999999
Q ss_pred cCCCCCCC-CCHHHHhHHHHHHHHHHHHHHh
Q 003040 518 SVVPEDGT-SIPAYRSSLAVGFLYEFFGSLT 547 (854)
Q Consensus 518 ~~~p~~d~-~s~eYRr~la~~L~~r~l~~~~ 547 (854)
++.|.++. +|++|||+|+.+|++|++.+++
T Consensus 290 ~~~p~~d~~~s~~YRr~l~~~l~~r~~~~~~ 320 (321)
T TIGR03195 290 TSQPMRTTLMGVKYRRRVLLAIARRLVDQLW 320 (321)
T ss_pred hCCCccCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999887 6999999999999999998764
No 16
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=100.00 E-value=4.8e-52 Score=445.64 Aligned_cols=258 Identities=21% Similarity=0.210 Sum_probs=233.5
Q ss_pred cCCHHHHHHHHhhhcCCCCCcceEEccCccceE-eecc--ccCceeeeCCCcccccceEecCCcEEecccccHHHHHHHH
Q 003040 246 PISVQELRNVLESVEGSNQISSKLVAGNTGMGY-YKEV--EHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEAL 322 (854)
Q Consensus 246 P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~-~k~~--~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~l 322 (854)
|+||+||+++|++ +++++++||||+|++ ++.+ ..|+++|||++|+||++|+.++++|+|||+|||++|+++.
T Consensus 1 P~sl~ea~~ll~~-----~~~a~ivaGgT~l~~~~~~~~~~~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~~~ 75 (264)
T TIGR03199 1 PAALDEAWSLLEK-----APDSTFVSGSTLLQLQWEKGTLPMKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRKNP 75 (264)
T ss_pred CCCHHHHHHHHHh-----CCCCEEEEccChHHHHHhcCcCCCCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhhCh
Confidence 8999999999994 578999999999988 4443 4589999999999999999999999999999999998742
Q ss_pred HHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCeeEEEehhhhh
Q 003040 323 KEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEEFL 402 (854)
Q Consensus 323 ~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp~~~~sD~~~~LlAldA~v~l~s~~g~R~vpl~dF~ 402 (854)
. ..+.+|.|+++++.||++||||+||||||||++ . ||++|+|+||||+|+|.+ .|.|+||++|||
T Consensus 76 ~---------i~~~~p~L~~a~~~ia~~qIRN~aTlGGNl~~~--~---sD~~p~Llal~A~v~i~~-~g~r~vp~~~f~ 140 (264)
T TIGR03199 76 L---------IKRALPCFVDAASAIAAPGVRNRATIGGNIASG--I---GDFIPALLVLGAELIVYQ-KELIRLPLGAWL 140 (264)
T ss_pred H---------hHhHhHHHHHHHHHhcCHHHhcceecHHhccCc--c---cchHHHHHHcCCEEEEEe-CCEEEEEHHHhh
Confidence 1 124699999999999999999999999999998 4 899999999999999999 999999999999
Q ss_pred cCCCCCCCceEEEEEc-CCCCccCCcccCCCcceEEEEEEeccCCCCCccceeeeeEEEEEcCCCCCCCceeeeeEEEEc
Q 003040 403 ERPPLDSRSILLSVEI-PCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAFG 481 (854)
Q Consensus 403 ~~~~L~~~Eii~~I~i-P~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~d~a~v~~A~~v~~~~~~~~~~~~i~~~ria~G 481 (854)
.++.|.++|||++|.| |.+.. +..+.+||+.+| +++++++|++|+.+.++. +++|+++||+||
T Consensus 141 ~~~~l~~~Eii~~I~i~p~~~~----------~~~~~~~k~~~R-~~~~~a~v~~a~~~~~~~-----~~~i~~~ria~G 204 (264)
T TIGR03199 141 SEEDFKPTAIVTRVIIGPRAET----------GEFVFYHKVGRR-ETFTGSLVVVAGRFLLDG-----SQTIKEIRLAVG 204 (264)
T ss_pred hccCCCCCcEEEEEEEECCCCC----------CCcEEEEEEecc-chhHHHHheeeEEEEEcC-----CCeEEEEEEEee
Confidence 9889999999999999 65533 345667888888 789999999999999863 469999999999
Q ss_pred ccCCCcceeHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCCCCCC-CCHHHHhHHHHHHHH
Q 003040 482 AFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGT-SIPAYRSSLAVGFLY 540 (854)
Q Consensus 482 gv~~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~~~~p~~d~-~s~eYRr~la~~L~~ 540 (854)
|++++ |+|+.++|++|.|++|++++++++.+.+.+++.|.+|. +|++||++|+++|+.
T Consensus 205 gv~~~-p~r~~~~E~~L~G~~~~~~~~~~a~~~~~~~~~p~~d~~~s~~YR~~l~~~~~~ 263 (264)
T TIGR03199 205 GADIT-PRRLLDSEAKLMAPPWDPHLLAELYKTIIQELPFSSDPFATAAYRKKVAANVIV 263 (264)
T ss_pred cCCCc-eeeHHHHHHHhcCCCCCHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhc
Confidence 99999 99999999999999999999999999999999999987 699999999999874
No 17
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=100.00 E-value=9.2e-52 Score=419.27 Aligned_cols=161 Identities=37% Similarity=0.684 Sum_probs=143.5
Q ss_pred eEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccCc
Q 003040 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGC 91 (854)
Q Consensus 12 ~~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g~ 91 (854)
..|+|+|||++++++ ++|+++|+++||++++|||+|.||++|.||||||+| ||+++|||++++.+++|+
T Consensus 50 ~~i~~~VNG~~~~~~-v~~~~tLLd~LR~~l~ltGtK~GC~~G~CGACTVlV----------dG~~v~SCl~la~~~~G~ 118 (217)
T PRK11433 50 SPVTLKVNGKTEQLE-VDTRTTLLDALREHLHLTGTKKGCDHGQCGACTVLV----------NGRRLNACLTLAVMHQGA 118 (217)
T ss_pred ceEEEEECCEEEEEe-cCCCCcHHHHHHHhcCCCCCCCCCCCCCcCceEEEE----------CCEEeeeeeeehhhcCCC
Confidence 669999999999996 899999999999999999999999999999999999 799999999999999999
Q ss_pred eeEEecCCCCCCCCcchHhHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCC----CCCCCCCCHHHHHHHHhCCc
Q 003040 92 LITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEP----PPGLSKLTISEAEKAIAGNL 167 (854)
Q Consensus 92 ~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~----~~~~~~~~~~~i~~~l~gnl 167 (854)
+|+|||||+. .+.+||+|+||+++|++|||||||||||++++||++++.. .|.. ....+.||++||+++|+|||
T Consensus 119 ~ItTiEGL~~-~~~lhpvQ~Af~~~~a~QCGyCTPG~imsa~alL~~~~~~-~~~~~~~~~~~~p~pt~~eIrealsGNl 196 (217)
T PRK11433 119 EITTIEGLGS-PDNLHPMQAAFVKHDGFQCGYCTPGQICSSVAVLKEIKDG-IPSHVTVDLTAAPELTADEIRERMSGNI 196 (217)
T ss_pred EEEEeCCcCC-CCCCCHHHHHHHHcCCCcCCCCCccHHHHHHHHHHhcccc-CccccccccccCCCCCHHHHHHHHcCCc
Confidence 9999999986 5689999999999999999999999999999999764211 0100 00023457999999999999
Q ss_pred cccCCChhHHHHHHHhhh
Q 003040 168 CRCTGYRPIADACKSFAA 185 (854)
Q Consensus 168 CRCtgy~~i~~a~~~~~~ 185 (854)
||||||++|++|+++++.
T Consensus 197 CRCtgY~~Iv~Av~~~a~ 214 (217)
T PRK11433 197 CRCGAYSNILEAIEDVAG 214 (217)
T ss_pred cCCCCcHHHHHHHHHHHh
Confidence 999999999999999874
No 18
>TIGR02965 xanthine_xdhB xanthine dehydrogenase, molybdopterin binding subunit. Members of the protein family are the molybdopterin-containing large subunit (or, in, eukaryotes, the molybdopterin-binding domain) of xanthine dehydrogenase, and enzyme that reduces the purine pool by catabolizing xanthine to urate. This model is based primarily on bacterial sequences; it does not manage to include all eukaryotic xanthine dehydrogenases and thereby discriminate them from the closely related enzyme aldehyde dehydrogenase.
Probab=100.00 E-value=1e-50 Score=491.50 Aligned_cols=235 Identities=39% Similarity=0.629 Sum_probs=214.0
Q ss_pred CCCcccccccccccccceeccccCCCCCCcEEEEEEecCCCCceeccCCCCccCCCCCEEEEEEcCCCCCCCCCCCcccc
Q 003040 604 VGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNIGSKTI 683 (854)
Q Consensus 604 iGk~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~~ID~s~A~~~PGVv~v~t~~Dip~~g~n~~~~~~ 683 (854)
|||+++|+|+..||||+++|++|+..+|||||++++|||++||+|++||+|+|++||||++|+|++|+| +.|.. ...
T Consensus 1 ~G~~~~R~d~~~kvtG~a~Y~~Di~~~pgmL~a~~vrSp~aha~I~~iD~s~A~~~pGV~~V~t~~D~p--~~~~~-g~~ 77 (758)
T TIGR02965 1 VGTSLKHESAHKHVAGTAVYIDDIPEPAGTLHAALGLSTRAHARITSMDLSAVRAAPGVVDVLTAADIP--GENDI-SPI 77 (758)
T ss_pred CCCCccCcchHhhCceeeEcccCCCCCCCCEEEEEEecCCCceEEeecchHHHhcCCCcEEEEEHHHCC--CCCCC-CCC
Confidence 699999999999999999999999546899999999999999999999999999999999999999998 44431 223
Q ss_pred CCCcccccCCceeecCCeEEEEEeCCHHHHHHhccccEEEEecCCCCCCcCCHHHHHhcCCCCcCCCcccCCCCCChhhh
Q 003040 684 FGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISKG 763 (854)
Q Consensus 684 ~~d~p~~a~~~V~y~GqpIa~VvAet~~~A~~Aa~~V~V~y~~e~l~p~v~~~~~Al~~~~~~~~~~~~~~~~~Gd~~~a 763 (854)
..++|+|++++|+|+||||++|||+|+++|++|+++|+|+| +++ |+++|+++|++++++...+. .....||++++
T Consensus 78 ~~~~~~la~~~Vry~Ge~va~VvA~~~~~A~~A~~~i~V~y--e~l-p~v~d~~~Al~~~a~~~~~~--~~~~~Gd~~~a 152 (758)
T TIGR02965 78 IHDDPLLADGKVEFVGQPIFAVIATSRDAARRAARLAKIEY--EEL-PAVLDIEEALAAGSRFVTPP--LTLERGDAEAA 152 (758)
T ss_pred CCCceeccCCEEEEcCCeEEEEEECCHHHHHHHhhccEEEE--EcC-CccCCHHHHhcCCCCcccCc--ccccCCCHHHH
Confidence 36899999999999999999999999999999999999999 888 89999999998876421111 13578999999
Q ss_pred cccCCeeEEEEEEEECccccCCCCCCeEEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCCCEEEEeCCcCCCCCCCC
Q 003040 764 MNEADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGGKA 843 (854)
Q Consensus 764 ~~~a~~~vve~~~~~~~q~H~~mEp~~a~A~~~~dg~l~V~~stQ~p~~~~~~vA~~Lglp~~kV~V~~~~~GGgFGgK~ 843 (854)
|++|+++ ||++|++++|+|++|||++|+|+|+++|+|+||+|||+|+.+|..+|++||||+++|||+++++|||||+|.
T Consensus 153 f~~a~~v-ve~~y~~~~~~h~~mEp~~~vA~~~~~g~l~v~~stQ~p~~~r~~lA~~Lglp~~~VrV~~~~vGGgFG~K~ 231 (758)
T TIGR02965 153 LAAAPHR-LSGEMRIGGQEHFYLEGQIALAVPGEDGGMHVWSSTQHPSEVQHLVAHVLGVPSHAVTVEVRRMGGGFGGKE 231 (758)
T ss_pred HhhCCEE-EEEEEEECCEeEEecCCceEEEEEcCCCCEEEEECCCChHHHHHHHHHHhCCChHHEEEEeCCCccCccccc
Confidence 9999985 999999999999999999999999976789999999999999999999999999999999999999999999
Q ss_pred CCcH
Q 003040 844 IKAM 847 (854)
Q Consensus 844 ~~~~ 847 (854)
+...
T Consensus 232 ~~~~ 235 (758)
T TIGR02965 232 TQAN 235 (758)
T ss_pred cccc
Confidence 8653
No 19
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=100.00 E-value=3.5e-50 Score=427.46 Aligned_cols=273 Identities=26% Similarity=0.294 Sum_probs=244.3
Q ss_pred CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceE-eecc-ccCceeeeCCCcccccceEecCCc-EEecccccHH
Q 003040 240 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGY-YKEV-EHYDKYIDIRYIPELSVIRRDQTG-IEIGATVTIS 316 (854)
Q Consensus 240 ~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~-~k~~-~~~~~lIdl~~I~EL~~I~~~~~~-l~IGA~vTl~ 316 (854)
.|+|++|+|++||+.+++. .+++++|+|||+|.. ||.+ ..|.++|||++|+++..+...+++ |+|||+||++
T Consensus 3 ~f~y~rp~Sv~eA~~ll~~-----~~~a~~laGGt~L~~~~k~~~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~ 77 (284)
T COG1319 3 NFEYYRPASVEEALNLLAR-----APDAKYLAGGTDLLPLMKLGIERPDHLVDINGLDELLGIVTTEGGSLRIGALVTLT 77 (284)
T ss_pred ceEEECCCCHHHHHHHHHh-----CCCcEEeeCcchHHHHhhcccCCcceEEEecCChhhhceEeecCCEEEEeecccHH
Confidence 4799999999999999994 569999999999988 6765 689999999999988888777555 9999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCeeEEE
Q 003040 317 KAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKL 396 (854)
Q Consensus 317 ~l~~~l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp~~~~sD~~~~LlAldA~v~l~s~~g~R~v 396 (854)
+|..+-. ....+|+|++++..+|++||||+||||||||+++|. +|++|+|+||||+|++.+..|+|++
T Consensus 78 ei~~~~~---------~~~~~p~L~ea~~~ia~~qvRN~aTiGGn~c~a~p~---aD~~~aLlaLdA~v~~~~~~g~r~i 145 (284)
T COG1319 78 EIARHPA---------VRRIPPALSEAASAIASPQVRNRATIGGNLCNADPA---ADLAPALLALDAEVEIRSPGGERTI 145 (284)
T ss_pred HHHhChh---------hhhhchHHHHHHHHhcChhhcceeeecchhccCCCc---hhhHHHHHHcCCEEEEecCCccEEE
Confidence 9998631 123699999999999999999999999999999998 9999999999999999999999999
Q ss_pred ehhhhhc---CCCCCCCceEEEEEcCCCCccCCcccCCCcceEEEEEEeccCCCCCccceeeeeEEEEEcCCCCCCCcee
Q 003040 397 MLEEFLE---RPPLDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRV 473 (854)
Q Consensus 397 pl~dF~~---~~~L~~~Eii~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~d~a~v~~A~~v~~~~~~~~~~~~i 473 (854)
|++|||. .+.|+++||||+|.||.+.. ..+.+||+.+||...+++.|++|..+.. ++|
T Consensus 146 ~~~~f~~~p~~t~l~~gelit~v~lP~~~~-----------~~~~~~kk~r~r~~~~~~~vsvA~~~~~--------~~v 206 (284)
T COG1319 146 PIEDFFRGPGETALEPGELITAVILPPPPA-----------ARGAYYKKVRRRASFAIALVSVAAKLRG--------DRV 206 (284)
T ss_pred EHHHhhcCccccccCCCcEEEEEEcCCCcc-----------CCccEEEEeecchhhhHHHHHHHhhhcc--------cce
Confidence 9999998 57899999999999999732 2344577776657778888888876654 379
Q ss_pred eeeEEEEcccCCCcceeHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCCCCCC-CCHHHHhHHHHHHHHHHHHHHhhh
Q 003040 474 NNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGT-SIPAYRSSLAVGFLYEFFGSLTEM 549 (854)
Q Consensus 474 ~~~ria~Ggv~~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~~~~p~~d~-~s~eYRr~la~~L~~r~l~~~~~~ 549 (854)
+++||++||++++ |+|+.++|+.|.|+++++++++.+.+.+.+++.|.+|. +|++||++|+++++.|+|.++..+
T Consensus 207 ~~~RvAlgg~a~~-p~R~~~~E~~L~~~~l~~~~~~~~~~~~~~~~~p~~d~r~s~~yr~~l~~~~~~ral~~a~~~ 282 (284)
T COG1319 207 SEARVALGGVAPK-PWRLEDAEAALLGKPLSLETLEAAAEAAMQEAAPISDVRGSAEYRRKLAKVLLARALAEAQGR 282 (284)
T ss_pred eeeeeeecccCCc-ceehHHHHHHhhCCCCChHHHHHHHHHhhcccCCcccccchHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999 99999999999999999999999999999999999987 699999999999999999998765
No 20
>TIGR03196 pucD xanthine dehydrogenase D subunit. This gene has been characterized in B. subtilis as the molybdopterin binding-subunit of xanthine dehydrogenase (pucD), acting in conjunction with pucC, the FAD-binding subunit and pucE, the FeS-binding subunit. The more common XDH complex (GenProp0640) includes the xdhB gene which is related to pucD. It appears that most of the relatives of pucD outside of this narrow clade are involved in other processes as they are found in unrelated genomic contexts, contain the more common XDH complex and/or do not appear to process purines to allantoin.
Probab=100.00 E-value=1.9e-50 Score=488.57 Aligned_cols=240 Identities=26% Similarity=0.432 Sum_probs=217.0
Q ss_pred CCCCccc-ccccccccccceeccccCCCCCCcEEEEEEecCCCCceeccCCCCccCCCCCEEEEEEcCCCCCCCCC-CCc
Q 003040 603 PVGEPIT-KSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQN-IGS 680 (854)
Q Consensus 603 ~iGk~~~-r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~~ID~s~A~~~PGVv~v~t~~Dip~~g~n-~~~ 680 (854)
+|||+++ |+|+..||||+++|++|++ +|||||++++|||++||+|++||+++|+++|||++|+|++|+| +.| ++.
T Consensus 2 ~iG~~~~~R~d~~~kvtG~a~Y~~Di~-~pgmL~a~~vrSp~aha~I~siD~s~A~a~pGV~~V~t~~D~p--~~~~~g~ 78 (768)
T TIGR03196 2 GIGKPSRVRPDGPDKVTGEFKYMGDLR-FPGMLHAKTLRSAHAHAEIRRVCTDAAEKLEGVQAMVTAADVP--GLARFGI 78 (768)
T ss_pred cCCCcCCcCcchHhhCcccccccccCC-CCCcEEEEEEecCCCcEEEeeccHHHHHhCCCcEEEEehHHCC--CCCCCCc
Confidence 4899999 9999999999999999998 7999999999999999999999999999999999999999998 433 222
Q ss_pred cccCCCcccccCCceeecCCeEEEEEeCCHHHHHHhccccEEEEecCCCCCCcCCHHHHHhcCC--CCcCCCccc---CC
Q 003040 681 KTIFGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSS--LFEVPSFLY---PK 755 (854)
Q Consensus 681 ~~~~~d~p~~a~~~V~y~GqpIa~VvAet~~~A~~Aa~~V~V~y~~e~l~p~v~~~~~Al~~~~--~~~~~~~~~---~~ 755 (854)
...++|+|++++|+|+|||||+|||+|+++|++|+++|+|+| +++ |+++|+++|+++++ +|+ ..|+. ..
T Consensus 79 --~~~~~~~la~~~Vr~~G~~VA~VvA~t~~~A~~A~~~v~Vey--e~l-p~v~d~~~a~~~~a~~i~~-~~ni~~~~~~ 152 (768)
T TIGR03196 79 --IIADQPVFAADEIRYAGDAIAAVAAEDEEIAEAALAAIEVDY--EEL-APMDDPDKALQPDAEPLHE-AGNILHEAEF 152 (768)
T ss_pred --cCCCcccccCCEEEEcCCeEEEEEECCHHHHHHHhccCceEE--EeC-CCcCCHHHHhcCCCCeECC-CCcCcceeee
Confidence 235899999999999999999999999999999999999999 788 88999999998764 243 23332 35
Q ss_pred CCCChhhhcccCCeeEEEEEEEECccccCCCCCCeEEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCCCEEEEeCCc
Q 003040 756 PVGDISKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRV 835 (854)
Q Consensus 756 ~~Gd~~~a~~~a~~~vve~~~~~~~q~H~~mEp~~a~A~~~~dg~l~V~~stQ~p~~~~~~vA~~Lglp~~kV~V~~~~~ 835 (854)
..||++++|++|+++ ||++|++++|+|+||||++++|+|++||+|+||+|||+|+.+|..+|++||||++||||+++++
T Consensus 153 ~~Gd~~~af~~a~~v-ve~~y~~~~~~h~~mEp~~~~A~~~~~g~l~v~~stQ~p~~~r~~lA~~Lglp~~~VrV~~~~v 231 (768)
T TIGR03196 153 RHGDPDEGFAAGDTV-FEDQYELGMQDHAFLAPEAALAMPAADGGFDLRAATQHGHKDREQIAACFDIPEEKIRITLAGM 231 (768)
T ss_pred ccCCHhHHhccCCEE-EEEEEEeCCeeeeecCCceEEEEEcCCCCEEEEECCCchHHHHHHHHHHhCCCHHHEEEEeCCC
Confidence 789999999999985 9999999999999999999999999767899999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcHHHHhc
Q 003040 836 GGAFGGKAIKAMPVSIS 852 (854)
Q Consensus 836 GGgFGgK~~~~~~~a~a 852 (854)
|||||+|.+....+.++
T Consensus 232 GGgFG~K~~~~~~~~aa 248 (768)
T TIGR03196 232 GGAFGGKDDLNIQIHAA 248 (768)
T ss_pred CCccCCcccccHHHHHH
Confidence 99999999876554443
No 21
>PRK09970 xanthine dehydrogenase subunit XdhA; Provisional
Probab=100.00 E-value=2.1e-50 Score=489.20 Aligned_cols=239 Identities=26% Similarity=0.358 Sum_probs=215.6
Q ss_pred CCCCcccccccccccccceeccccCCCCCCcEEEEEEecCCCCceeccCCCCccCCCCCEEEEEEcCCCCCCCCCC---C
Q 003040 603 PVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNI---G 679 (854)
Q Consensus 603 ~iGk~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~~ID~s~A~~~PGVv~v~t~~Dip~~g~n~---~ 679 (854)
.|||+++|+|+..||||+++|++|+. +|||||++++|||++||+|++||+++|++||||++|+|++|+| +.|+ +
T Consensus 2 ~vG~~~~r~d~~~kvtG~~~Y~~D~~-~~gmL~a~~~rSp~aharI~siD~~~A~~~pGV~~Vvt~~D~p--~~~~~~~~ 78 (759)
T PRK09970 2 AIGKSIMRVDAIAKVTGRAKYTDDYV-MAGMLYAKYVRSPIAHGKVKSIDTEEARSLPGVEAVFTWEDVP--DIPFPTAG 78 (759)
T ss_pred CCCCCCcCcchHHhCcCCccccccCC-CCCCEEEEEEcCCCceEEEeeeeHHHHHhCCCcEEEEeHHHcC--Cccccccc
Confidence 48999999999999999999999997 7999999999999999999999999999999999999999998 4443 1
Q ss_pred cc------ccCCCcccccCCceeecCCeEEEEEeCCHHHHHHhccccEEEEecCCCCCCcCCHHHHHhcCCC--CcCCCc
Q 003040 680 SK------TIFGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSSL--FEVPSF 751 (854)
Q Consensus 680 ~~------~~~~d~p~~a~~~V~y~GqpIa~VvAet~~~A~~Aa~~V~V~y~~e~l~p~v~~~~~Al~~~~~--~~~~~~ 751 (854)
.. ....++|+|++++|+|+|||||+|||+|+++|++|+++|+|+| +++ |+++|+++|+++++. |+...|
T Consensus 79 ~~~~~~~~~~~~~~~~la~~~Vr~~G~~VAaVvA~~~~~A~~A~~~i~Vey--e~l-p~v~~~~~Al~~~a~~ih~~~~n 155 (759)
T PRK09970 79 HPWSLDPNHRDIADRALLTRHVRHHGDAVAAVVARDELTAEKALKLIKVEY--EEL-PVITDPEAALAEGAPPIHNGRGN 155 (759)
T ss_pred cccCCCCCCCCCCCccCcCCEEEEcCCeEEEEEeCCHHHHHHHhCCCcEeE--EeC-CccCCHHHHhCCCCCccCCCCCc
Confidence 00 0113789999999999999999999999999999999999999 888 899999999988763 432133
Q ss_pred c---cCCCCCChhhhcccCCeeEEEEEEEECccccCCCCCCeEEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCCCE
Q 003040 752 L---YPKPVGDISKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPESAHATIARCLGIPEHNV 828 (854)
Q Consensus 752 ~---~~~~~Gd~~~a~~~a~~~vve~~~~~~~q~H~~mEp~~a~A~~~~dg~l~V~~stQ~p~~~~~~vA~~Lglp~~kV 828 (854)
+ .....||++++|++|+++ ||++|++++|+|+||||++|+|+|+++|+|+||+|||+|+.+|..+|++||||++||
T Consensus 156 i~~~~~~~~Gd~~~a~~~a~~v-ve~~y~~~~~~h~~mEp~~~iA~~~~~g~l~v~~stQ~p~~~~~~ia~~Lglp~~~V 234 (759)
T PRK09970 156 LLKQSTMSTGNVQQTIKAADYQ-VQGHYETPIVQHCHMENVTSYAYMEDDGRITIVSSTQIPHIVRRVVGQALGIPWGKV 234 (759)
T ss_pred eeeeeeeccCChhHhhccCCEE-EEEEEEECCEeEeccCCceEEEEECCCCCEEEEECCCcHHHHHHHHHHHhCCCHHHE
Confidence 3 235789999999999995 999999999999999999999999976799999999999999999999999999999
Q ss_pred EEEeCCcCCCCCCCCCCcHH
Q 003040 829 RVITRRVGGAFGGKAIKAMP 848 (854)
Q Consensus 829 ~V~~~~~GGgFGgK~~~~~~ 848 (854)
||+++++|||||+|......
T Consensus 235 rV~~~~vGGgFG~K~~~~~~ 254 (759)
T PRK09970 235 RVIKPYVGGGFGNKQDVLEE 254 (759)
T ss_pred EEEeCCCCCCcCcccccCHH
Confidence 99999999999999887655
No 22
>TIGR03194 4hydrxCoA_A 4-hydroxybenzoyl-CoA reductase, alpha subunit. This model represents the largest chain, alpha, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=100.00 E-value=3e-49 Score=477.43 Aligned_cols=231 Identities=26% Similarity=0.358 Sum_probs=210.1
Q ss_pred ccccccccccccceeccccCCCCCCcEEEEEEecCCCCceeccCCCCccCCCCCEEEEEEcCCCCCCCCCCCccccCCCc
Q 003040 608 ITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNIGSKTIFGSE 687 (854)
Q Consensus 608 ~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~~ID~s~A~~~PGVv~v~t~~Dip~~g~n~~~~~~~~d~ 687 (854)
++|+|+..||||+++|++|+. +|||||++++|||++||+|++||+++|++||||++|+|++|+| . +.+......|+
T Consensus 1 ~~R~d~~~kvtG~a~Y~~D~~-~pgmL~a~vvrSp~ahA~I~siD~s~A~a~pGV~~V~t~~D~p--~-~~g~~~~~~d~ 76 (746)
T TIGR03194 1 VPLVDGVEKVTGKAKYTADLA-APGALVGRILRSPHAHARILAIDTSEAEALPGVIAVVTGADCP--V-PYGVLPIAENE 76 (746)
T ss_pred CcCcchHhhCccccccccCCC-CCCCEEEEEEecCCccEEEeeccHHHHHhCCCcEEEEeHHHCC--c-ccCCCCCCCCC
Confidence 479999999999999999998 6999999999999999999999999999999999999999998 3 33322223589
Q ss_pred ccccCCceeecCCeEEEEEeCCHHHHHHhccccEEEEecCCCCCCcCCHHHHHhcCCC--CcC-CCcc---cCCCCCChh
Q 003040 688 PLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSSL--FEV-PSFL---YPKPVGDIS 761 (854)
Q Consensus 688 p~~a~~~V~y~GqpIa~VvAet~~~A~~Aa~~V~V~y~~e~l~p~v~~~~~Al~~~~~--~~~-~~~~---~~~~~Gd~~ 761 (854)
|+|++++|+|+|||||+|||+|+++|++|+++|+|+| |+| |+++|+++|+++++. |++ +.|+ .....||++
T Consensus 77 ~~la~~~Vr~~G~~VA~VvA~t~~~A~~A~~~v~Vey--e~l-p~v~d~~~Al~~~a~~ih~~~~~Nv~~~~~~~~Gd~~ 153 (746)
T TIGR03194 77 YPLARDKVRYRGDPVAAVAAVDEVTAEKALALIKVEY--EEL-PAYMDPKAAMKAGAILLHDNKPGNIEREVHNEFGDVA 153 (746)
T ss_pred ccCCCCeEEEcCCeEEEEEECCHHHHHHHhcCCcEEE--ecC-CCcCCHHHHhcCCCCccCCCCCCcEEEEEeeccCCHh
Confidence 9999999999999999999999999999999999999 888 899999999988774 432 2343 245789999
Q ss_pred hhcccCCeeEEEEEEEECccccCCCCCCeEEEEECC-CCcEEEEeCCCChHHHHHHHHHHhCCCCCCEEEEeCCcCCCCC
Q 003040 762 KGMNEADHRILAAEIKLGSQYYFYMETQTALAVPDE-DNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFG 840 (854)
Q Consensus 762 ~a~~~a~~~vve~~~~~~~q~H~~mEp~~a~A~~~~-dg~l~V~~stQ~p~~~~~~vA~~Lglp~~kV~V~~~~~GGgFG 840 (854)
++|++|+++ ||++|++++|+|+||||++|+|+|++ +|+|+||++||+|+.+|..+|++||||++||||+++++|||||
T Consensus 154 ~a~~~a~~v-ve~~~~~~~~~h~~mEp~~~~A~~~~~~~~l~v~~stQ~p~~~r~~va~~Lglp~~kVrV~~~~vGGgFG 232 (746)
T TIGR03194 154 AAFAEADLI-REKTFTCAEVNHAHMEPNATLAEYDPVRGMLTLNSVTQVPYYVHLKLARCLQMDSARIRVIKPFLGGGFG 232 (746)
T ss_pred HHhccCCEE-EEEEEEECCEeEEccCCCeEEEEEeCCCCeEEEEECCCchHHHHHHHHHHhCCCHHHeEEEcCCCcCccc
Confidence 999999985 99999999999999999999999985 5689999999999999999999999999999999999999999
Q ss_pred CCCCCc
Q 003040 841 GKAIKA 846 (854)
Q Consensus 841 gK~~~~ 846 (854)
+|....
T Consensus 233 ~K~~~~ 238 (746)
T TIGR03194 233 ARVEPL 238 (746)
T ss_pred cccccc
Confidence 998864
No 23
>PRK09799 putative oxidoreductase; Provisional
Probab=100.00 E-value=2.4e-48 Score=414.48 Aligned_cols=250 Identities=21% Similarity=0.281 Sum_probs=219.3
Q ss_pred eEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeccccCceeeeCCCcccccceEecCCcEEecccccHHHHHHH
Q 003040 242 SWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEA 321 (854)
Q Consensus 242 ~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~ 321 (854)
+|++|+|++||+++|+++ .++++++||||+|++......|+++|||++| ||++|+.++++|+|||+|||++++++
T Consensus 4 ~y~~P~sl~Ea~~ll~~~----~~~a~ilAGGT~L~~~~~~~~~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~~~ 78 (258)
T PRK09799 4 QFFRPDSVEQALELKRRY----QDEAVWFAGGSKLNATPTRTDKKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLRDA 78 (258)
T ss_pred cEeCCCCHHHHHHHHHhC----CCCCEEEecCCChHhhhCCCCCCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHHhC
Confidence 799999999999999953 3569999999999873222578999999999 99999999999999999999999886
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCeeEEEehhhh
Q 003040 322 LKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEEF 401 (854)
Q Consensus 322 l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp~~~~sD~~~~LlAldA~v~l~s~~g~R~vpl~dF 401 (854)
.. ..+.|+++++.||++||||+||||||||+++|. ||++|+|+||||+|+|.+. |++|++||
T Consensus 79 ~~------------~~~~L~~a~~~vas~qIRN~aTiGGNl~~a~p~---sD~~p~LlAldA~v~l~~~---r~vpl~~f 140 (258)
T PRK09799 79 RF------------IPAALREALGFVYSRHLRNQSTIGGEIAARQEE---SVLLPVLLALDAELVFGNG---ETLSIEDY 140 (258)
T ss_pred cc------------cHHHHHHHHHHhCCHHHhccchhHHHhhcCCcc---HHHHHHHHHcCCEEEEecC---cEEeHHHh
Confidence 31 123899999999999999999999999999998 9999999999999999884 89999999
Q ss_pred hcCCCCCCCceEEEEEcCCCCccCCcccCCCcceEEEEEEeccCCCCCccceeeeeEEEEEcCCCCCCCceeeeeEEEEc
Q 003040 402 LERPPLDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAFG 481 (854)
Q Consensus 402 ~~~~~L~~~Eii~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~d~a~v~~A~~v~~~~~~~~~~~~i~~~ria~G 481 (854)
|.. .++|||++|.||.+.. .+.+||+. | +.+|+|+||+|+.++++. ++||+||
T Consensus 141 ~~g---~~~Eil~~I~iP~~~~------------~~~~~K~~-r-~~~~~a~v~~A~~~~~~~----------~~ria~G 193 (258)
T PRK09799 141 LAC---PCDRLLTEIIIPDPYR------------TCATRKIS-R-SQAGLTVVTAAVALTDHD----------GMRIALD 193 (258)
T ss_pred cCC---CCCcEEEEEEcCCCCC------------cceEEEec-c-cccChhhheeEEEEEEcC----------CeEEEEE
Confidence 975 4799999999996532 23457875 7 688999999999998752 4899999
Q ss_pred ccCCCcceeHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCCCCCC-CCHHHHhHHHHHHHHHHHHHHhhh
Q 003040 482 AFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGT-SIPAYRSSLAVGFLYEFFGSLTEM 549 (854)
Q Consensus 482 gv~~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~~~~p~~d~-~s~eYRr~la~~L~~r~l~~~~~~ 549 (854)
|++++ |+|++++|+ +.++++++.++ +.+++.|.+|. +|++||++++++|++|+|.++.+.
T Consensus 194 gv~~~-p~r~~~~E~----~~~~~~~~~~a---~~~~~~p~~d~~~s~~YR~~~~~~l~~r~l~~~~~~ 254 (258)
T PRK09799 194 GVASK-PLRLHDVEK----QNLEGNALEQA---VANAIFPQEDLRGSVAYKRYIAGVLVADLYADCQQA 254 (258)
T ss_pred CCCCc-ccchHHHhc----CCCCHHHHHHH---HHhcCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 999999998 88999888876 45788999887 599999999999999999998764
No 24
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=100.00 E-value=1.3e-47 Score=408.38 Aligned_cols=251 Identities=21% Similarity=0.275 Sum_probs=217.8
Q ss_pred ceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeccccCceeeeCCCcccccceEecCCcEEecccccHHHHHH
Q 003040 241 GSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIE 320 (854)
Q Consensus 241 ~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~ 320 (854)
.+||+|+|++||+++|+++ .++++++||||+|++......+.++|||++| ||++|+.++++|+|||+|||++|++
T Consensus 2 ~~y~~P~sl~Ea~~ll~~~----~~~a~~lAGGTdL~~~~~~~~~~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l~~ 76 (257)
T TIGR03312 2 EQFFRPESTIQALELKKRH----TGVAVWFAGGSKLNATPTRTDKKVAISLDKL-ALDKIELQGGALHIGAMCHLQSLID 76 (257)
T ss_pred CceECCCCHHHHHHHHHhC----CCCCEEEecCcchhhhhcccCCCEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHHHh
Confidence 3799999999999999953 2479999999999874323567899999999 9999999999999999999999987
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCeeEEEehhh
Q 003040 321 ALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEE 400 (854)
Q Consensus 321 ~l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp~~~~sD~~~~LlAldA~v~l~s~~g~R~vpl~d 400 (854)
+.. ..+.|.+++++||++||||+||||||||+++|. +|++|+|+||||+|+|.+. |+||++|
T Consensus 77 ~~~------------~~~~L~~aa~~va~~qIRN~gTlGGNl~~a~p~---~D~~~~LlaldA~v~l~~~---r~vp~~d 138 (257)
T TIGR03312 77 NEL------------TPAALKEALGFVYSRHIRNQATIGGEIAAFQSE---SLLLPVLLALKATVVLANA---SQMDIED 138 (257)
T ss_pred Ccc------------hHHHHHHHHHHhCCHHHhccccHHHHhhcCCCc---hHHHHHHHHcCCEEEEecC---cEEeHHH
Confidence 631 123799999999999999999999999999999 9999999999999999876 8999999
Q ss_pred hhcCCCCCCCceEEEEEcCCCCccCCcccCCCcceEEEEEEeccCCCCCccceeeeeEEEEEcCCCCCCCceeeeeEEEE
Q 003040 401 FLERPPLDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAF 480 (854)
Q Consensus 401 F~~~~~L~~~Eii~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~d~a~v~~A~~v~~~~~~~~~~~~i~~~ria~ 480 (854)
||.. .++|||++|+||.+.. .+.++|+ .| +.+|||+|++|+.++++. ++||+|
T Consensus 139 F~~g---~~~Ell~~V~iP~~~~------------~~~~~k~-~R-~~~~~a~v~~A~~~~~~~----------~~ria~ 191 (257)
T TIGR03312 139 YLAS---EQRELIVEVIIPNPNL------------MCATRNI-SR-SAAGLAVVTAAVAVDQKG----------NMRIAL 191 (257)
T ss_pred hcCC---CCCcEEEEEEcCCCCC------------CceEEEe-cC-cccchhhheeEEEEEecC----------CEEEEE
Confidence 9976 4799999999997532 2345677 67 789999999999988741 489999
Q ss_pred cccCCCcceeHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCCCCCC-CCHHHHhHHHHHHHHHHHHHHhhh
Q 003040 481 GAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGT-SIPAYRSSLAVGFLYEFFGSLTEM 549 (854)
Q Consensus 481 Ggv~~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~~~~p~~d~-~s~eYRr~la~~L~~r~l~~~~~~ 549 (854)
||++++ |+|+.++|+. .++++.++++ +.+++.|.+|. +|++|||+|+++|++|++.++.+-
T Consensus 192 ggv~~~-p~r~~~~E~~----~~~~~~~~~~---~~~~~~p~~D~r~sa~YRr~~~~~l~~r~l~~~~~~ 253 (257)
T TIGR03312 192 DGVSPV-PVRLRDVEAQ----DLKGEALEQA---VADAIHPVADLCGSVAYKRYIAGVVVADLLAECQQL 253 (257)
T ss_pred EccCCc-eeehHHHhhC----cCCHHHHHHH---HHhcCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 9999999985 5777777654 66889999998 599999999999999999988763
No 25
>COG4631 XdhB Xanthine dehydrogenase, molybdopterin-binding subunit B [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.6e-48 Score=423.29 Aligned_cols=244 Identities=36% Similarity=0.586 Sum_probs=227.8
Q ss_pred CcCCCCcccccccccccccceeccccCCCCCCcEEEEEEecCCCCceeccCCCCccCCCCCEEEEEEcCCCCCCCCCCCc
Q 003040 601 YYPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNIGS 680 (854)
Q Consensus 601 ~~~iGk~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~~ID~s~A~~~PGVv~v~t~~Dip~~g~n~~~ 680 (854)
...||.+.++-++..+|+|+|.|+||++.++|.||+++-.|+++||+|+++|++++++.|||+.|+|++|+| |.|. .
T Consensus 16 ~~~v~~~~~HeSAhkHV~GtA~YiDD~pepag~LH~~~gls~~aHAri~~mDl~~v~a~PGVv~vlta~DvP--GenD-i 92 (781)
T COG4631 16 RGGVGTSLRHESAHKHVTGTAVYIDDIPEPAGTLHGALGLSERAHARITRMDLSAVRAAPGVVDVLTAADVP--GEND-I 92 (781)
T ss_pred CCcccccccccchhhcccceeEEecCCCCcccchhhhccccccchheeeecchHHhhcCCCeEEEEEecCCC--CCCC-C
Confidence 356899999999999999999999999999999999999999999999999999999999999999999999 8775 2
Q ss_pred cccCCCcccccCCceeecCCeEEEEEeCCHHHHHHhccccEEEEecCCCCCCcCCHHHHHhcCCCCcCCCcccCCCCCCh
Q 003040 681 KTIFGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDI 760 (854)
Q Consensus 681 ~~~~~d~p~~a~~~V~y~GqpIa~VvAet~~~A~~Aa~~V~V~y~~e~l~p~v~~~~~Al~~~~~~~~~~~~~~~~~Gd~ 760 (854)
.+...|+|+|++++|.|+||||.+|+|+|.++|++|+.+.+|+| ++| |+++|+.+|++.+.+...+ ...++||.
T Consensus 93 sp~~hddpl~a~gkVef~GQ~vfaV~A~s~e~ARraA~~a~ieY--e~l-p~~~di~~a~a~~~~v~~p---~~l~rGD~ 166 (781)
T COG4631 93 SPVKHDDPLLADGKVEFHGQPVFAVIAESREAARRAARLAKIEY--EDL-PPVTDIDEAIAAGRLVTPP---LTLKRGDA 166 (781)
T ss_pred CcccCCCccccCceEEEccceEEEEeehhHHHHHHHHHhhhccc--ccC-CccCCHHHHhhcccccCCc---hhhcccch
Confidence 33468999999999999999999999999999999999999999 999 9999999999888553322 25789999
Q ss_pred hhhcccCCeeEEEEEEEECccccCCCCCCeEEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCCCEEEEeCCcCCCCC
Q 003040 761 SKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFG 840 (854)
Q Consensus 761 ~~a~~~a~~~vve~~~~~~~q~H~~mEp~~a~A~~~~dg~l~V~~stQ~p~~~~~~vA~~Lglp~~kV~V~~~~~GGgFG 840 (854)
+.+|+.|.+. ++++++++.|+|||||.+.++|.|.|||.++||+|||.|..+|..||++||+|.|.|.|.++|||||||
T Consensus 167 ~a~~~~Ap~r-~~G~~~iGGQehFYLEgqia~a~p~Ed~~v~v~~STQhPtE~Q~~vahvLGvpsn~VtV~~rRMGGGFG 245 (781)
T COG4631 167 AAALAAAPHR-LQGEMRIGGQEHFYLEGQIALAVPGEDGDVTVWSSTQHPTEVQHLVAHVLGVPSNAVTVEVRRMGGGFG 245 (781)
T ss_pred hhhhhhCchh-heeeEEEcCeeeEEEeeeeeEeccCCCCCEEEEecCCCcHHHHHHHHHHhCCCcceEEEEEEeecCCcC
Confidence 9999999996 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcHHHHhccC
Q 003040 841 GKAIKAMPVSISHM 854 (854)
Q Consensus 841 gK~~~~~~~a~a~A 854 (854)
||++...+.||.||
T Consensus 246 GKEtQ~~~fAa~aA 259 (781)
T COG4631 246 GKETQANQFAALAA 259 (781)
T ss_pred cccccchHHHHHHH
Confidence 99999998887654
No 26
>TIGR02416 CO_dehy_Mo_lg carbon-monoxide dehydrogenase, large subunit. This model represents the large subunits of group of carbon-monoxide dehydrogenases that include molybdenum as part of the enzymatic cofactor. There are various forms of carbon-monoxide dehydrogenase; Salicibacter pomeroyi DSS-3, for example, has two forms. Note that, at least in some species, the active site Cys is modified with a selenium attached to (rather than replacing) the sulfur atom. This is termed selanylcysteine, and created post-translationally, in contrast to selenocysteine incorporation during translation as for many other selenoproteins.
Probab=100.00 E-value=8.8e-48 Score=466.59 Aligned_cols=230 Identities=25% Similarity=0.287 Sum_probs=200.6
Q ss_pred ccccccccceeccccCCCCCCcEEEEEEecCCCCceeccCCCCccCCCCCEEEEEEcCCCCCCCCCCCccc-cC-CCccc
Q 003040 612 GAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNIGSKT-IF-GSEPL 689 (854)
Q Consensus 612 d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~~ID~s~A~~~PGVv~v~t~~Dip~~g~n~~~~~-~~-~d~p~ 689 (854)
|+.++|||+++|++|++ +|||||++++|||++||+|++||+|+|++||||++|+|++|+| +.|..... .. .++|+
T Consensus 1 e~~r~vtG~a~Y~~Di~-~pgmL~a~~vrSp~aha~I~~ID~s~A~~~pGV~~V~t~~D~p--~~~~~~~~~~~~~~~~~ 77 (770)
T TIGR02416 1 EDIRFIQGKGNYVDDVK-LPGMLHGDIVRSPHAHARIKSIDTSAAKALPGVFAVLTAADLK--PLNLHWMPTLAGDVQAV 77 (770)
T ss_pred CCcccccccccccccCC-CCCCEEEEEEcCCCccEEEecccHHHHhhCCCcEEEEEHHHcC--CccCCcCCCCCCCCccc
Confidence 46789999999999998 7999999999999999999999999999999999999999998 33321111 11 23899
Q ss_pred ccCCceeecCCeEEEEEeCCHHHHHHhccccEEEEecCCCCCCcCCHHHHHhcCCC--CcCC-C------------cc-c
Q 003040 690 FADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSSL--FEVP-S------------FL-Y 753 (854)
Q Consensus 690 ~a~~~V~y~GqpIa~VvAet~~~A~~Aa~~V~V~y~~e~l~p~v~~~~~Al~~~~~--~~~~-~------------~~-~ 753 (854)
|++++|+|+|||||+|||+|+++|++|+++|+|+| +++ |+++|+++|+++++. |+.. . +. .
T Consensus 78 la~~~Vry~Ge~Va~VvA~t~~~A~~A~~~v~V~y--e~l-p~v~d~~~A~~~~a~~ih~~~~~~~~~~~~~~n~~~~~~ 154 (770)
T TIGR02416 78 LADEKVLFQNQEVAFVVAKDRYVAADAIELVEVDY--EPL-PVVIDPFKALEPDAPVLREDLKGKTTGAHGARKHHNHIF 154 (770)
T ss_pred CcCCEEEEcCCcEEEEEECCHHHHHHHhccceeee--ecC-CccCCHHHHhcCCCceecCCCCCccccccccccccceee
Confidence 99999999999999999999999999999999999 788 899999999987763 3311 1 11 1
Q ss_pred CC---CCCChhhhcccCCeeEEEEEEEECccccCCCCCCeEEEEECC-CCcEEEEeCCCChHHHHHHHHHHhCCCCCCEE
Q 003040 754 PK---PVGDISKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPDE-DNCLVVYSSIQCPESAHATIARCLGIPEHNVR 829 (854)
Q Consensus 754 ~~---~~Gd~~~a~~~a~~~vve~~~~~~~q~H~~mEp~~a~A~~~~-dg~l~V~~stQ~p~~~~~~vA~~Lglp~~kV~ 829 (854)
.. ..||++++|++|+++ ||++|++++|+|+||||++|+|+|++ +|+|+||+|||+|+.+|..||++||||++|||
T Consensus 155 ~~~~gd~gd~~~af~~a~~v-ve~~~~~~~~~h~~mEp~~~iA~~~~~~g~l~v~~stQ~p~~~r~~vA~~Lglp~~~Vr 233 (770)
T TIGR02416 155 RWEIGDKAATDAVFAKAEVV-VKQMMTYPRVHPSPLETCGCVASMDPIKGELTLWGTFQAPHVIRTVVSLISGLPEHKIR 233 (770)
T ss_pred EEecCCccchhHHhccCCEE-EEEEEEeCceeeEcCCCCeEEEEEeCCCCeEEEEECCCcHHHHHHHHHHHhCCCHHHEE
Confidence 12 445679999999985 99999999999999999999999985 57899999999999999999999999999999
Q ss_pred EEeCCcCCCCCCCCCCcHH
Q 003040 830 VITRRVGGAFGGKAIKAMP 848 (854)
Q Consensus 830 V~~~~~GGgFGgK~~~~~~ 848 (854)
|+++++|||||+|......
T Consensus 234 V~~~~vGGgFG~K~~~~~~ 252 (770)
T TIGR02416 234 VISPDIGGGFGNKVGIYPG 252 (770)
T ss_pred EEcCCCCCCcccccccccH
Confidence 9999999999999876433
No 27
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=100.00 E-value=1.4e-38 Score=319.99 Aligned_cols=165 Identities=34% Similarity=0.463 Sum_probs=141.3
Q ss_pred CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEe-ecc-ccCceeeeCCCcccccceEecCCcEEecccccHHH
Q 003040 240 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYY-KEV-EHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISK 317 (854)
Q Consensus 240 ~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~-k~~-~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~ 317 (854)
.++|++|+|++||+++++ .++++++|||||+++++ +.+ ..|+.+|||++|+||++|+.++++|+|||+||+++
T Consensus 2 ~~~~~~P~sl~ea~~ll~-----~~~~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vtl~~ 76 (171)
T PF00941_consen 2 PFEYFRPKSLEEALELLA-----KGPDARIVAGGTDLGVQMREGILSPDVLIDLSRIPELNGISEDDGGLRIGAAVTLSE 76 (171)
T ss_dssp S-EEEE-SSHHHHHHHHH-----HGTTEEEESS-TTHHHHHHTTS---SEEEEGTTSGGGG-EEEETSEEEEETTSBHHH
T ss_pred CeEEEccCCHHHHHHHHh-----cCCCCEEEeCCCccchhcccCccccceEEEeEEecccccEEEeccEEEECCCccHHH
Confidence 479999999999999999 36899999999999994 443 57999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCeeEEEe
Q 003040 318 AIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLM 397 (854)
Q Consensus 318 l~~~l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp~~~~sD~~~~LlAldA~v~l~s~~g~R~vp 397 (854)
++++.. ..+.+|.|++++++||++||||+||||||||+++|. ||++|+|+||||+|++.+.+|+|++|
T Consensus 77 l~~~~~---------~~~~~p~L~~~~~~ias~~IRn~aTiGGNl~~~~~~---sD~~~~Llal~A~v~i~~~~g~r~~~ 144 (171)
T PF00941_consen 77 LEESPL---------IQQYFPALAQAARRIASPQIRNRATIGGNLCNASPA---SDLAPALLALDARVEIASPDGTRTVP 144 (171)
T ss_dssp HHHHHH---------HHHHHHHHHHHHCTSS-HHHHTT-BHHHHHHHTBTT----SHHHHHHHTT-EEEEEETTEEEEEE
T ss_pred Hhhcch---------hhhhHHHHHHHHHHhCCHhHeeeeeeccccccCccc---ccHHHHHHHhCcEEEEEcCCeeEEEE
Confidence 999721 234699999999999999999999999999999998 99999999999999999999999999
Q ss_pred hhhhhc---CCCCCCCceEEEEEcCCC
Q 003040 398 LEEFLE---RPPLDSRSILLSVEIPCW 421 (854)
Q Consensus 398 l~dF~~---~~~L~~~Eii~~I~iP~~ 421 (854)
++|||. ++.|.++|||++|+||.|
T Consensus 145 ~~~f~~g~~~~~l~~~eli~~I~iP~~ 171 (171)
T PF00941_consen 145 LEDFFTGPRKTDLEPGELITSIRIPKP 171 (171)
T ss_dssp GGGGEECTTEESS-TTEEEEEEEEES-
T ss_pred HHHhcCccccccCCCCcEEEEEECCCC
Confidence 999998 568999999999999975
No 28
>COG1529 CoxL Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]
Probab=100.00 E-value=4.7e-35 Score=353.09 Aligned_cols=237 Identities=29% Similarity=0.433 Sum_probs=207.3
Q ss_pred cCCCCcccccccccccccceeccccCCCCCCcEEEEEEecCCCCceeccCCCCccCCCCCEEEEEEcCCCCCCCCCCCcc
Q 003040 602 YPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNIGSK 681 (854)
Q Consensus 602 ~~iGk~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~~ID~s~A~~~PGVv~v~t~~Dip~~g~n~~~~ 681 (854)
..+|+++.|.|+..||||+++|++|+. .+||+|+++||||++|++|++||.++|+++|||++|+|++|+|. ..+.. .
T Consensus 4 ~~~gr~~~R~~~~~~vtG~~~y~~d~~-~~~~~~~~~vrs~~a~a~i~~id~~ea~~~~gv~av~ta~~l~~-~~~~~-~ 80 (731)
T COG1529 4 EIIGRSVLRADGLGKVTGKGRYADDIV-APGMLYAAFVRSPYAHARIVSIDVSEAQGLPGVLAVITAEELPA-WSPVR-V 80 (731)
T ss_pred ccCCCCcccccchhheeeeeheehhhc-CCCCceEEEEeccCCceEEEEechHHHhhCCCeEEEechhhCcc-ccccc-c
Confidence 579999999999999999999999998 78999999999999999999999999999999999999999983 11110 0
Q ss_pred ccCCCcccccCCceeecCCeEEEEEeCCHHHHHHhccccEEEEecCCCCCCcCCHHHHHhcCCC--CcCCCcccCCCCCC
Q 003040 682 TIFGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSSL--FEVPSFLYPKPVGD 759 (854)
Q Consensus 682 ~~~~d~p~~a~~~V~y~GqpIa~VvAet~~~A~~Aa~~V~V~y~~e~l~p~v~~~~~Al~~~~~--~~~~~~~~~~~~Gd 759 (854)
......++|+.++|+|+||||++|+|+|+++|.+|+++|.|+| +++ ++++++++++.++.. |+..+.......||
T Consensus 81 ~~~p~~~~l~~~~v~~~G~~vA~vva~d~~~A~~aa~~v~V~y--e~l-~~~v~~~~a~~~~~~~ih~~~n~~~~~~~g~ 157 (731)
T COG1529 81 ELAPADEVLARGKVRYTGEPVAAVVAEDEYQARAAAELVLVEY--EAL-PPVVDPEEALAEDAPVIHDELNIARDATFGD 157 (731)
T ss_pred ccCCcchhhccCceEEeCCeEEEEEeCCHHHHHHHHhhceeee--ccC-CCcCCHHHHhcCCCccccccccccccccccc
Confidence 0111222789999999999999999999999999999999999 888 899999999988653 22111123456778
Q ss_pred hhhhcccCCeeEEEEEEEECccccCCCCCCeEEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCCCEEEEeCCcCCCC
Q 003040 760 ISKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAF 839 (854)
Q Consensus 760 ~~~a~~~a~~~vve~~~~~~~q~H~~mEp~~a~A~~~~dg~l~V~~stQ~p~~~~~~vA~~Lglp~~kV~V~~~~~GGgF 839 (854)
.+ +|++|+++ ++.+|.++.+.|.+|||++++++|+++++|++|++||+|+.++..++++|++|+++|+|+.+++||||
T Consensus 158 ~~-a~a~A~~~-v~~~~~~~~~~~~~~E~~g~~a~~~d~~~lt~~~~tQ~~~~~~~~l~~~l~~p~~~vrvi~~dvGggf 235 (731)
T COG1529 158 DD-AFAAAAVV-VEAPYKTPRKDPNPMEPHGVVAVPDDGDKLTVWASTQIPHRLRGMLAAVLGIPPSKVRVISPDVGGGF 235 (731)
T ss_pred ch-hhhcCcEE-eeeeeeccCcCccCcccccceeeEcCCCeEEEEEccCCchHHHHHHHHHhCCCHHHeEEecCCCCccc
Confidence 88 99999996 99999999999999999999999993338999999999999999999999999999999999999999
Q ss_pred CCCCCCc
Q 003040 840 GGKAIKA 846 (854)
Q Consensus 840 GgK~~~~ 846 (854)
|+|....
T Consensus 236 G~K~~~~ 242 (731)
T COG1529 236 GSKGVVY 242 (731)
T ss_pred CCcccce
Confidence 9998754
No 29
>PF01799 Fer2_2: [2Fe-2S] binding domain; InterPro: IPR002888 The [2Fe-2S] binding domain is found in a range of enzymes including dehydrogenases, oxidases and oxidoreductases. The aldehyde oxido-reductase (Mop) from the sulphate reducing anaerobic Gram-negative bacterium Desulfovibrio gigas is a homodimer of 907 amino acid residues subunits and is a member of the xanthine oxidase family. The protein contains a molybdopterin cofactor (Mo-co) and two different [2Fe-2S] centres. It is folded into four domains of which the first two bind the iron sulphur centres and the last two are involved in Mo-co binding. Mo-co is a molybdenum molybdopterin cytosine dinucleotide. Molybdopterin forms a tricyclic system with the pterin bicycle annealed to a pyran ring. The molybdopterin dinucleotide is deeply buried in the protein. The cis-dithiolene group of the pyran ring binds the molybdenum, which is coordinated by three more (oxygen) ligands [].; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 2E3T_A 1WYG_A 3AN1_B 2E1Q_C 2CKJ_A 3B9J_I 3NVY_J 1FO4_B 3NRZ_J 3AM9_A ....
Probab=99.97 E-value=3.6e-31 Score=227.30 Aligned_cols=75 Identities=52% Similarity=1.006 Sum_probs=61.7
Q ss_pred EecCCCCCCCCcchHhHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCccccCCCh
Q 003040 95 TSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYR 174 (854)
Q Consensus 95 TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRCtgy~ 174 (854)
|||||++ ++.|||||++|+++|++|||||||||||++++||+++ |+| |++||+++|+|||||||||+
T Consensus 1 TvEGl~~-~~~~~~iq~af~~~~a~QCGfCtpG~im~~~~ll~~~-----~~p-------~~~ei~~al~gnlCRCTgY~ 67 (75)
T PF01799_consen 1 TVEGLAS-DGELHPIQQAFVEHGAVQCGFCTPGMIMAAYALLRRN-----PDP-------TEEEIREALSGNLCRCTGYR 67 (75)
T ss_dssp -GGGSSB-TTB--HHHHHHHHTT--SSSSSHHHHHHHHHHHHHHS-----SS--------CHHHHHHHTTTS--SSSTSH
T ss_pred CcCcCCC-CCCcCHHHHHHHHhCCCcCCcchHHHHHHHHHHhhcc-----cch-------hhHHHHHHHHcCccCCCCcH
Confidence 8999975 7899999999999999999999999999999999653 666 69999999999999999999
Q ss_pred hHHHHHHH
Q 003040 175 PIADACKS 182 (854)
Q Consensus 175 ~i~~a~~~ 182 (854)
+|++|++.
T Consensus 68 ~I~~Av~~ 75 (75)
T PF01799_consen 68 PIVEAVRQ 75 (75)
T ss_dssp HHHHHHH-
T ss_pred HHHHHHhC
Confidence 99999973
No 30
>PF01315 Ald_Xan_dh_C: Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; InterPro: IPR000674 Aldehyde oxidase (1.2.3.1 from EC) catalyses the conversion of an aldehyde in the presence of oxygen and water to an acid and hydrogen peroxide. The enzyme is a homodimer, and requires FAD, molybdenum and two 2FE-2S clusters as cofactors. Xanthine dehydrogenase (1.1.1.204 from EC) catalyses the hydrogenation of xanthine to urate, and also requires FAD, molybdenum and two 2FE-2S clusters as cofactors. This activity is often found in a bifunctional enzyme with xanthine oxidase (1.1.3.22 from EC) activity too. The enzyme can be converted from the dehydrogenase form to the oxidase form irreversibly by proteolysis or reversibly through oxidation of sulphydryl groups.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1N63_E 1N60_B 1ZXI_E 1N5W_E 1N62_B 1N61_E 3AN1_B 2E3T_A 1WYG_A 2W3R_D ....
Probab=99.95 E-value=3.3e-28 Score=227.26 Aligned_cols=107 Identities=43% Similarity=0.643 Sum_probs=89.4
Q ss_pred ccceeccccCCCCCCcEEEEEEecCCCCceeccCCCCccCCCCCEEEEEEcCCCCCCCCCCCcc-ccCCC--cccccCCc
Q 003040 618 SGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNIGSK-TIFGS--EPLFADEL 694 (854)
Q Consensus 618 tG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~~ID~s~A~~~PGVv~v~t~~Dip~~g~n~~~~-~~~~d--~p~~a~~~ 694 (854)
||+++|++|++ +|||||+++||||++||+|++||+++|++||||++|+|++|+| +.|.... ....+ +|+|++++
T Consensus 1 TG~a~Y~~Di~-~~~~l~~~~vrS~~a~a~I~sid~~~A~~~pGV~~v~t~~Dip--~~~~~~~~~~~~~~~~~~la~~~ 77 (111)
T PF01315_consen 1 TGEARYVDDIP-PPGMLYAAFVRSPIAHARIKSIDTSEALAMPGVVAVITAEDIP--GINPNGGLPIPHDEPQPVLADDK 77 (111)
T ss_dssp TT-S-BGGGSC-STTTEEEEEEE-SSSSEEEEEEEGHHHHHSTTEEEEEEGGGHS--SGSEESCSCSTTSSEEESS-SSE
T ss_pred CcCeEcccccC-CCCCeEEEEEecCcCcEEEEEEecHHHccCCCEEEEEEecccC--ccccCccccccCCCceEeccCCe
Confidence 89999999998 7999999999999999999999999999999999999999999 4443111 22334 57999999
Q ss_pred eeecCCeEEEEEeCCHHHHHHhccccEEEEecCCC
Q 003040 695 TRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNL 729 (854)
Q Consensus 695 V~y~GqpIa~VvAet~~~A~~Aa~~V~V~y~~e~l 729 (854)
|+|+||||++|||+|+++|++|+++|+|+| |+|
T Consensus 78 V~y~GqpVa~VvAet~~~A~~Aa~~V~V~Y--e~l 110 (111)
T PF01315_consen 78 VRYVGQPVALVVAETREAARDAAELVKVEY--EEL 110 (111)
T ss_dssp ESSTT-EEEEEEESSHHHHHHHHHT-EEEE--EE-
T ss_pred EeECCCeEEEEEECCHHHHHHHhcCcEEEe--EeC
Confidence 999999999999999999999999999999 766
No 31
>PF02738 Ald_Xan_dh_C2: Molybdopterin-binding domain of aldehyde dehydrogenase; InterPro: IPR008274 Aldehyde oxidase (1.2.3.1 from EC) catalyses the conversion of an aldehyde in the presence of oxygen and water to an acid and hydrogen peroxide. The enzyme is a homodimer, and requires FAD, molybdenum and two 2FE-2S clusters as cofactors. Xanthine dehydrogenase (1.1.1.204 from EC) catalyses the hydrogenation of xanthine to urate, and also requires FAD, molybdenum and two 2FE-2S clusters as cofactors. This activity is often found in a bifunctional enzyme with xanthine oxidase (1.1.3.22 from EC) activity too. The enzyme can be converted from the dehydrogenase form to the oxidase form irreversibly by proteolysis or reversibly through oxidation of sulphydryl groups.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3NVZ_C 3NVY_C 1FO4_B 3NRZ_L 3AM9_A 3B9J_C 3AX7_B 3NVW_L 3BDJ_A 3ETR_N ....
Probab=99.77 E-value=2.8e-19 Score=211.50 Aligned_cols=91 Identities=40% Similarity=0.497 Sum_probs=74.3
Q ss_pred CCCCCChhhhcccCCeeEEEEEEEECccccCCCCCCeEEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCCCEEEEeC
Q 003040 754 PKPVGDISKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITR 833 (854)
Q Consensus 754 ~~~~Gd~~~a~~~a~~~vve~~~~~~~q~H~~mEp~~a~A~~~~dg~l~V~~stQ~p~~~~~~vA~~Lglp~~kV~V~~~ 833 (854)
..+.||++++|++|+++ ||++|++++|+|++|||++|+|+|+++|+|+||++||+|+.+|..||++||||++||||+.+
T Consensus 17 ~~~~GDve~af~~a~~v-ve~~y~~~~~~h~~mEp~~~~A~~~~~g~l~v~~~tQ~p~~~r~~va~~lglp~~~V~V~~~ 95 (547)
T PF02738_consen 17 HIERGDVEAAFAEADHV-VEAEYRTPRQAHAPMEPHGAVAWWDEDGRLTVWSSTQWPFHVRRAVAEALGLPPEKVRVISP 95 (547)
T ss_dssp EEEESSHHHHHHHTSEE-EEEEEEE-BB----SS-SEEEEEEETTTEEEEEES-SSHHHHHHHHHHHHTS-GGGEEEEES
T ss_pred ccccCCHHHHHhhCCEE-EEEEEEECCccccCCCCCeEEEEEccCCCEEEEECCcCHhHHHHHHhhhhcCChhHEEEeee
Confidence 46899999999999995 99999999999999999999999996679999999999999999999999999999999999
Q ss_pred CcCCCCC-CCCCC
Q 003040 834 RVGGAFG-GKAIK 845 (854)
Q Consensus 834 ~~GGgFG-gK~~~ 845 (854)
++||||| +|...
T Consensus 96 ~~GGgFG~~~~~~ 108 (547)
T PF02738_consen 96 YVGGGFGKKKQDS 108 (547)
T ss_dssp B-S--TTTTSSTH
T ss_pred ecCCCCCCccccc
Confidence 9999999 44333
No 32
>PF03450 CO_deh_flav_C: CO dehydrogenase flavoprotein C-terminal domain; InterPro: IPR005107 Proteins containing this domain form structural complexes with other known families, such as IPR008274 from INTERPRO and IPR001041 from INTERPRO]. The carbon monoxide (CO) dehydrogenase of Oligotropha carboxidovorans is a heterotrimeric complex composed of a apoflavoprotein, a molybdoprotein, and an iron-sulphur protein. It can be dissociated with sodium dodecylsulphate []. CO dehydrogenase catalyzes the oxidation of CO according to the following equation []: CO + H2O = CO2 + 2e + 2H+ Subunit S represents the iron-sulphur protein of CO dehydrogenase and is clearly divided into a C- and an N-terminal domain, each binding a [2Fe-2S] cluster [].; PDB: 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B 3UNI_A 3AMZ_A ....
Probab=99.74 E-value=1.8e-17 Score=153.11 Aligned_cols=101 Identities=27% Similarity=0.390 Sum_probs=93.3
Q ss_pred EEEeccCCCCCccceeeeeEEEEEcCCCCCCCceeeeeEEEEcccCCCcceeHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 003040 439 TYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDS 518 (854)
Q Consensus 439 ~~K~~~R~~~~d~a~v~~A~~v~~~~~~~~~~~~i~~~ria~Ggv~~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~~ 518 (854)
+||+.+| +++|||++|+|+.+.+++ +++|+++||++||++++ |+|++++|++|.|++|++++++++++.+.++
T Consensus 2 ayk~~~R-~~~d~a~v~~a~~~~~~~-----~~~i~~~ria~g~v~~~-p~r~~~~E~~L~g~~~~~~~~~~~~~~~~~~ 74 (103)
T PF03450_consen 2 AYKIGRR-KANDIAIVNVAVLVSVDD-----DGRIEDARIAVGGVAPT-PVRAEEVEAALIGKPLSEETLEEAAEAVSEE 74 (103)
T ss_dssp EEEESSS-SSSSSSSEEEEEEEEEET-----TSEEEEEEEEEESSSSS-TEE-HHHHHHTTTSBSSHHHHHHHHHHHHHH
T ss_pred CeeccCc-cccHHHHHhhhheEEEec-----CceEEEEEEEEeccccc-eeehHHHHHHHhhcchhhhhHHHHHHHHHhc
Confidence 4677777 899999999999999984 45999999999999999 9999999999999999999999999999999
Q ss_pred CCCCCCC-CCHHHHhHHHHHHHHHHHHHH
Q 003040 519 VVPEDGT-SIPAYRSSLAVGFLYEFFGSL 546 (854)
Q Consensus 519 ~~p~~d~-~s~eYRr~la~~L~~r~l~~~ 546 (854)
+.|.+|. +|++||++|+.+|++|+|.++
T Consensus 75 ~~~~~d~r~s~~YR~~l~~~l~~ral~~~ 103 (103)
T PF03450_consen 75 IDPISDMRASAEYRRHLARVLVRRALEEV 103 (103)
T ss_dssp THHCTTTTBTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 9999997 599999999999999999874
No 33
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=99.16 E-value=3.4e-11 Score=127.84 Aligned_cols=69 Identities=17% Similarity=0.401 Sum_probs=64.1
Q ss_pred EEEEEecCCCCCcHHHHHhhccCC-----cccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccCceeEE
Q 003040 21 EKFEVSSVDPSTTLLEFLRYHTRF-----KSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITT 95 (854)
Q Consensus 21 ~~~~~~~~~p~~~Ll~~LR~~~~l-----~g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~T 95 (854)
+.++++ +++++|||++||+ ++. +++|.||++|.||+|+|+| ||++++||++++..+.|.+++|
T Consensus 20 q~y~v~-~~~~~tvLd~L~~-i~~~~d~~l~~r~~C~~g~CGsCa~~I----------nG~p~laC~t~~~~~~~~~~it 87 (251)
T PRK12386 20 QDYTVE-VNEGEVVLDVIHR-LQATQAPDLAVRWNCKAGKCGSCSAEI----------NGRPRLMCMTRMSTFDEDETVT 87 (251)
T ss_pred EEEEEe-CCCCCCHHHHHHH-hccccCCCCcccCCCCCCcCCCCEEEE----------CccEeccHHhHHHHhCCCCeEE
Confidence 667886 7999999999998 677 5999999999999999999 8999999999999999999999
Q ss_pred ecCCCC
Q 003040 96 SEGLGN 101 (854)
Q Consensus 96 vEgl~~ 101 (854)
||+|.+
T Consensus 88 iepl~~ 93 (251)
T PRK12386 88 VTPMRT 93 (251)
T ss_pred EccCCC
Confidence 999975
No 34
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=98.68 E-value=2.4e-08 Score=105.80 Aligned_cols=69 Identities=20% Similarity=0.274 Sum_probs=60.8
Q ss_pred EEEEEecCC-CCCcHHHHHhhcc----CCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccCceeEE
Q 003040 21 EKFEVSSVD-PSTTLLEFLRYHT----RFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITT 95 (854)
Q Consensus 21 ~~~~~~~~~-p~~~Ll~~LR~~~----~l~g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~T 95 (854)
+.++++ ++ +++|||++|++.- +..+.+.||++|.||+|+|.| ||+++.||.+++..+ |.+++|
T Consensus 18 ~~~~v~-~~~~~~tvl~~L~~~~~~~~~~l~~~~~c~~g~Cg~C~v~v----------nG~~~laC~t~~~~~-~~~~~t 85 (232)
T PRK05950 18 QTYEVD-VDECGPMVLDALIKIKNEIDPTLTFRRSCREGVCGSDAMNI----------NGKNGLACITPISDL-KKGKIV 85 (232)
T ss_pred EEEEeC-CCCCCCHHHHHHHHhCCccCCcceeeCCCCCCCCCCCEEEE----------CCcCccchhChHhHc-CCCeEE
Confidence 456665 67 9999999999753 578999999999999999999 799999999999999 678999
Q ss_pred ecCCCC
Q 003040 96 SEGLGN 101 (854)
Q Consensus 96 vEgl~~ 101 (854)
||+|.+
T Consensus 86 iepl~~ 91 (232)
T PRK05950 86 IRPLPG 91 (232)
T ss_pred EEECCC
Confidence 999975
No 35
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=98.59 E-value=4.5e-08 Score=102.90 Aligned_cols=69 Identities=26% Similarity=0.483 Sum_probs=61.1
Q ss_pred EEEEEecCCCCCcHHHHHhhc----cCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccCceeEEe
Q 003040 21 EKFEVSSVDPSTTLLEFLRYH----TRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTS 96 (854)
Q Consensus 21 ~~~~~~~~~p~~~Ll~~LR~~----~~l~g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~Tv 96 (854)
+.++++ +++++|||+.|+.. ....+.+.+|+.|.||+|+|.| ||+++.||.+++..+ |.+++||
T Consensus 15 ~~~~v~-~~~~~tvl~~l~~i~~~~~~~l~~~~~C~~g~Cg~C~v~v----------nG~~~laC~t~v~~~-g~~~~~i 82 (220)
T TIGR00384 15 QSYEVP-ADEGMTVLDALNYIKDEQDPSLAFRRSCRNGICGSCAMNV----------NGKPVLACKTKVEDL-GQPVMKI 82 (220)
T ss_pred EEEEEe-CCCCCcHHHHHHHHHHhcCCCceeecccCCCCCCCCeeEE----------CCEEhhhhhChHHHc-CCCcEEE
Confidence 566776 78999999999862 2678899999999999999999 799999999999998 8999999
Q ss_pred cCCCC
Q 003040 97 EGLGN 101 (854)
Q Consensus 97 Egl~~ 101 (854)
|+|.+
T Consensus 83 epl~~ 87 (220)
T TIGR00384 83 EPLPN 87 (220)
T ss_pred eeCCC
Confidence 99975
No 36
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=98.52 E-value=2.4e-07 Score=100.52 Aligned_cols=70 Identities=26% Similarity=0.361 Sum_probs=59.9
Q ss_pred EEEEEecCCCCCcHHHHHhh---ccC-CcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhc--cCceeE
Q 003040 21 EKFEVSSVDPSTTLLEFLRY---HTR-FKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSV--NGCLIT 94 (854)
Q Consensus 21 ~~~~~~~~~p~~~Ll~~LR~---~~~-l~g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~--~g~~i~ 94 (854)
+.++++ +++++|||++|+. +.. -.+.+.+|++|.||+|+|.| ||+++.||.+++..+ ++.+++
T Consensus 25 ~~~~v~-~~~~~tvLd~L~~i~~~~d~tl~~~~~C~~G~CgsC~v~I----------NG~~~laC~t~v~~~~~~~~~~~ 93 (279)
T PRK12576 25 QEYKVK-VDRFTQVTEALRRIKEEQDPTLSYRASCHMAVCGSCGMKI----------NGEPRLACKTLVLDVAKKYNSVI 93 (279)
T ss_pred EEEEEe-cCCCCHHHHHHHHhCCccCCCceecCCCCCCCCCCCEEEE----------CCcEeccccCcHHHhhcCCCCcE
Confidence 557776 7899999999987 232 34779999999999999999 799999999999998 367889
Q ss_pred EecCCCC
Q 003040 95 TSEGLGN 101 (854)
Q Consensus 95 TvEgl~~ 101 (854)
|||+|.+
T Consensus 94 tiePl~~ 100 (279)
T PRK12576 94 TIEPMDY 100 (279)
T ss_pred EEEECCC
Confidence 9999975
No 37
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=98.40 E-value=8.2e-07 Score=82.62 Aligned_cols=70 Identities=26% Similarity=0.437 Sum_probs=55.3
Q ss_pred EEEEEecCCCCCcHHHHHh---hc-cCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccCc--eeE
Q 003040 21 EKFEVSSVDPSTTLLEFLR---YH-TRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGC--LIT 94 (854)
Q Consensus 21 ~~~~~~~~~p~~~Ll~~LR---~~-~~l~g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g~--~i~ 94 (854)
+.++++ +.+++|+|+.|. ++ -+--..+.+|.+|.||+|.|.| ||+++.+|.+++..+... ..+
T Consensus 19 ~~y~v~-~~~~~tVLd~L~~Ik~~~D~sLafr~sCr~giCGsCam~I----------NG~~~LAC~t~v~~~~~~~~~~i 87 (110)
T PF13085_consen 19 QEYEVP-VEPGMTVLDALNYIKEEQDPSLAFRYSCRSGICGSCAMRI----------NGRPRLACKTQVDDLIEKFGNVI 87 (110)
T ss_dssp EEEEEE-GGSTSBHHHHHHHHHHHT-TT--B--SSSSSSSSTTEEEE----------TTEEEEGGGSBGGGCTTSETBEE
T ss_pred EEEEec-CCCCCcHHHHHHHHHhccCCCeEEEecCCCCCCCCCEEEE----------CCceecceeeEchhccCCCcceE
Confidence 356676 679999999884 33 3556788999999999999999 899999999999999866 479
Q ss_pred EecCCCC
Q 003040 95 TSEGLGN 101 (854)
Q Consensus 95 TvEgl~~ 101 (854)
|||-|.+
T Consensus 88 ~IePL~~ 94 (110)
T PF13085_consen 88 TIEPLPN 94 (110)
T ss_dssp EEEESTT
T ss_pred EEEECCC
Confidence 9999964
No 38
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=98.18 E-value=1.3e-06 Score=92.99 Aligned_cols=68 Identities=28% Similarity=0.511 Sum_probs=56.5
Q ss_pred EEEEEecCCCCCcHHHHH---hhccCCc-ccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccCceeEEe
Q 003040 21 EKFEVSSVDPSTTLLEFL---RYHTRFK-SVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTS 96 (854)
Q Consensus 21 ~~~~~~~~~p~~~Ll~~L---R~~~~l~-g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~Tv 96 (854)
+.++++ +++++|||+.| +++...+ +.+.+|.+|.||+|+|.| ||+++.+|.+++..+.+. +||
T Consensus 25 ~~~~v~-~~~~~tvl~~L~~ik~~~d~~l~fr~~C~~giCGsC~v~I----------nG~~~laC~t~~~~~~~~--~~i 91 (244)
T PRK12385 25 QTYEVP-YDETTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMV----------NNVPKLACKTFLRDYTGG--MKV 91 (244)
T ss_pred EEEEee-CCCCCcHHHHHHHHHHhcCCCceeccCCCCCcCCCCcceE----------CccChhhHhhHHHHcCCC--eEE
Confidence 456666 68999999999 4455444 788999999999999999 799999999999987533 789
Q ss_pred cCCCC
Q 003040 97 EGLGN 101 (854)
Q Consensus 97 Egl~~ 101 (854)
|-|.+
T Consensus 92 ePl~~ 96 (244)
T PRK12385 92 EALAN 96 (244)
T ss_pred eeCCC
Confidence 99964
No 39
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.13 E-value=7.2e-06 Score=72.64 Aligned_cols=70 Identities=26% Similarity=0.434 Sum_probs=48.1
Q ss_pred eEEEEEECCEEEEEecCCCCCcHHHHHhhc-cCC---ccc----ccCCCCCCCCccEEEEeecCCCcccCCcee-ecccc
Q 003040 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYH-TRF---KSV----KLGCGEGGCGACVVLLSKYNPELDQLEDFT-ISSCL 82 (854)
Q Consensus 12 ~~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~-~~l---~g~----k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~-v~sCl 82 (854)
..|+|+|||+++++. ++.||++.|+.. ..+ ..- ..-|..|.|+.|.|.| +++. +.||.
T Consensus 2 ~~v~i~idG~~v~~~---~G~til~al~~~gi~ip~~c~~~~~r~~~~~~g~C~~C~Vev----------~g~~~v~AC~ 68 (82)
T PF13510_consen 2 KMVTITIDGKPVEVP---PGETILEALLAAGIDIPRLCYHGRPRGGLCPIGSCRLCLVEV----------DGEPNVRACS 68 (82)
T ss_dssp EEEEEEETTEEEEEE---ET-BHHHHHHHTT--B-EETTTS-EEBSSSSSTT-SS-EEEE----------SSEEEEETTT
T ss_pred CEEEEEECCEEEEEc---CCCHHHHHHHHCCCeEEEeeeccCcccccCCccccceEEEEE----------CCCcceEccc
Confidence 579999999999975 699999999863 222 222 3447789999999999 5666 99999
Q ss_pred cchhhccCceeEEe
Q 003040 83 TLLCSVNGCLITTS 96 (854)
Q Consensus 83 ~~~~~~~g~~i~Tv 96 (854)
+++. +|..|.|-
T Consensus 69 t~v~--~GM~V~T~ 80 (82)
T PF13510_consen 69 TPVE--DGMVVETQ 80 (82)
T ss_dssp -B----TTEEEE--
T ss_pred CCCc--CCcEEEEe
Confidence 9964 68888873
No 40
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=97.98 E-value=9.2e-06 Score=71.63 Aligned_cols=69 Identities=28% Similarity=0.468 Sum_probs=52.8
Q ss_pred EEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeecCCCc--------ccCCceeecccccch
Q 003040 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPEL--------DQLEDFTISSCLTLL 85 (854)
Q Consensus 14 i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~~~~~~~--------~~~~~~~v~sCl~~~ 85 (854)
|+|+.||+..+++ ++++++|+++|++ .|+. ...+|+.|.||+|.|.|.+-+... .......+.+|.+.+
T Consensus 1 v~~~~~~~~~~~~-~~~g~~ll~al~~-~g~~-~~~~C~~g~Cg~C~v~v~~G~~~~~~~~~~~~~~~~~~~~LaC~~~~ 77 (84)
T cd00207 1 VTINVPGSGVEVE-VPEGETLLDAARE-AGID-IPYSCRAGACGTCKVEVVEGEVDQSDPSLLDEEEAEGGYVLACQTRV 77 (84)
T ss_pred CEEecCCCCEEEE-ECCCCcHHHHHHH-cCCC-cccCCCCcCCcCCEEEEeeCccccCcccCCCHHHHhCCeEEEEeCee
Confidence 5788987777876 7899999999998 5877 999999999999999996422210 112355678888876
No 41
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=97.89 E-value=1.8e-05 Score=97.10 Aligned_cols=97 Identities=23% Similarity=0.351 Sum_probs=77.1
Q ss_pred EEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccc----cCCC-CCCCCccEEEEeecCCCcccCCceeecccccchhh
Q 003040 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVK----LGCG-EGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCS 87 (854)
Q Consensus 13 ~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k----~gC~-~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~ 87 (854)
+|+|+|||+++++ .+++|+|+.+|.. |+.-.. .+|. .|.|+.|.|.| +|+.+.||.+|+.
T Consensus 1 mv~i~IdG~~v~~---~~G~til~aa~~~-gi~iP~lC~~~~~~~~G~Cr~C~VeV----------~G~~~~AC~t~v~- 65 (819)
T PRK08493 1 MITITINGKECEA---QEGEYILNVARRN-GIFIPAICYLSGCSPTLACRLCMVEA----------DGKRVYSCNTKAK- 65 (819)
T ss_pred CeEEEECCEEEEe---CCCCHHHHHHHHc-CCccccccccCCCCCCccccceEEEE----------CCEEeccccCCCC-
Confidence 3899999999886 4799999999974 665432 4666 69999999999 6778999999984
Q ss_pred ccCceeEEecCCCCCCCCcchHhHHHHhcCCCCCCCCChH
Q 003040 88 VNGCLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPG 127 (854)
Q Consensus 88 ~~g~~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG 127 (854)
+|..|.|-..-- ...-+.+.+.+...|-.+|+.|..+
T Consensus 66 -dGM~V~T~s~~v--~~~Rk~vle~ll~~HpldC~~Cd~~ 102 (819)
T PRK08493 66 -EGMNILTNTPNL--MDERNAIMQTYDVNHPLECGVCDKS 102 (819)
T ss_pred -CCCEEEecCHHH--HHHHHHHHHHHHhccCCCCCcCCCC
Confidence 899999942211 1234678899999999999999865
No 42
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=97.88 E-value=1.8e-05 Score=84.61 Aligned_cols=68 Identities=22% Similarity=0.389 Sum_probs=55.7
Q ss_pred EEEEEecCCCCCcHHHHHhhc-----------cCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhcc
Q 003040 21 EKFEVSSVDPSTTLLEFLRYH-----------TRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVN 89 (854)
Q Consensus 21 ~~~~~~~~~p~~~Ll~~LR~~-----------~~l~g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~ 89 (854)
+.++|+ +++++|+|+.|..- ..--..+.+|.+|.||+|.|.| ||++..+|.+.+-.+.
T Consensus 23 q~y~v~-~~~~~tvLdaL~~I~~~~~~~~g~~~~~l~fr~sCr~giCGsCam~I----------NG~p~LAC~t~v~~~~ 91 (249)
T PRK08640 23 EEFEIP-YRPNMNVISALMEIRRNPVNAKGEKTTPVVWDMNCLEEVCGACSMVI----------NGKPRQACTALIDQLE 91 (249)
T ss_pred EEEEec-CCCCCcHHHHHHHHHhcccccccccCCCeeEecccCCCCCCcCeeEE----------CCccchhhhChHHHcC
Confidence 557776 68999999998632 1225678999999999999999 8999999999998873
Q ss_pred CceeEEecCCCC
Q 003040 90 GCLITTSEGLGN 101 (854)
Q Consensus 90 g~~i~TvEgl~~ 101 (854)
..+|||-|.+
T Consensus 92 --~~i~iePl~~ 101 (249)
T PRK08640 92 --QPIRLEPMST 101 (249)
T ss_pred --CcEEEEECCC
Confidence 3589999974
No 43
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=97.84 E-value=0.00017 Score=80.47 Aligned_cols=70 Identities=21% Similarity=0.404 Sum_probs=55.4
Q ss_pred EEEEEecCCCCCcHHHHHhhc-cCCcc---cccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhh-cc------
Q 003040 21 EKFEVSSVDPSTTLLEFLRYH-TRFKS---VKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCS-VN------ 89 (854)
Q Consensus 21 ~~~~~~~~~p~~~Ll~~LR~~-~~l~g---~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~-~~------ 89 (854)
+.++++ +++++|+|+.|+.. ..+.+ ...+|..|.||+|.|.| +|+++.||.+++.. ++
T Consensus 19 ~~~~v~-~~~~~tvL~~l~~i~~~~d~tL~~~~~c~~~~Cg~C~v~i----------nG~~~laC~t~v~~~~~~~~~~~ 87 (329)
T PRK12577 19 QTYTLE-VEPGNTILDCLNRIKWEQDGSLAFRKNCRNTICGSCAMRI----------NGRSALACKENVGSELARLSDSN 87 (329)
T ss_pred EEEEEE-CCCCChHHHHHHHhCCcCCCCcEEcCCCCCCCCCCCEEEE----------CCeeecCcccchhhhhccccccc
Confidence 456776 78999999999863 12222 67789999999999999 79999999999876 21
Q ss_pred --CceeEEecCCCC
Q 003040 90 --GCLITTSEGLGN 101 (854)
Q Consensus 90 --g~~i~TvEgl~~ 101 (854)
+...+|||-|++
T Consensus 88 ~~~~~~i~iePl~~ 101 (329)
T PRK12577 88 SGAIPEITIAPLGN 101 (329)
T ss_pred cCCCCeEEEEECCC
Confidence 235789999986
No 44
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=97.83 E-value=1.9e-05 Score=84.00 Aligned_cols=69 Identities=20% Similarity=0.340 Sum_probs=57.3
Q ss_pred EEEEEecCCCCCcHHHHHhh----ccCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccCceeEEe
Q 003040 21 EKFEVSSVDPSTTLLEFLRY----HTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTS 96 (854)
Q Consensus 21 ~~~~~~~~~p~~~Ll~~LR~----~~~l~g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~Tv 96 (854)
+.++|+ +++++|+|+.|+. +-+--+.+.+|.+|.||+|.|.| ||+++.+|.+.+..+.+. .+||
T Consensus 24 ~~y~v~-~~~~~tvLdaL~~Ik~~~D~sL~fr~sCr~giCGsCam~I----------NG~~~LAC~t~v~~~~~~-~i~i 91 (239)
T PRK13552 24 VTYQLE-ETPGMTLFIALNRIREEQDPSLQFDFVCRAGICGSCAMVI----------NGRPTLACRTLTSDYPDG-VITL 91 (239)
T ss_pred EEEEec-CCCCCCHHHHHHHHHhcCCCCeeEeccCCCCCCCCceeEE----------CCeEhhhhhccHhhcCCC-cEEE
Confidence 457776 7899999999964 22446789999999999999999 899999999999887522 5899
Q ss_pred cCCCC
Q 003040 97 EGLGN 101 (854)
Q Consensus 97 Egl~~ 101 (854)
|-|.+
T Consensus 92 ePl~~ 96 (239)
T PRK13552 92 MPLPV 96 (239)
T ss_pred EECCC
Confidence 99975
No 45
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=97.71 E-value=3.3e-05 Score=82.50 Aligned_cols=70 Identities=24% Similarity=0.433 Sum_probs=57.1
Q ss_pred EEEEEecCCCCCcHHHHHhh---cc-----CCcccccCCCCCCCCccEEEEeecCCCcccCCcee------ecccccchh
Q 003040 21 EKFEVSSVDPSTTLLEFLRY---HT-----RFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFT------ISSCLTLLC 86 (854)
Q Consensus 21 ~~~~~~~~~p~~~Ll~~LR~---~~-----~l~g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~------v~sCl~~~~ 86 (854)
+.++|+.+++++|+|+.|.. ++ .--+.+.+|.+|.||+|.|+| ||++ ..+|.+.+.
T Consensus 20 q~y~v~~~~~~~tvLd~L~~Ik~~~~~~~~~~l~fr~sCr~~iCGsCam~I----------NG~p~~~~~~~LAC~t~~~ 89 (250)
T PRK07570 20 ETYEVDDISPDMSFLEMLDVLNEQLIEKGEEPVAFDHDCREGICGMCGLVI----------NGRPHGPDRGTTTCQLHMR 89 (250)
T ss_pred EEEEecCCCCCCcHHHHHHHHHHHhhccCCCCeeEeccccCCcCCcceeEE----------CCccCCCCcccchhhhhhh
Confidence 45777545799999999953 11 226889999999999999999 8999 899999988
Q ss_pred hccCceeEEecCCC
Q 003040 87 SVNGCLITTSEGLG 100 (854)
Q Consensus 87 ~~~g~~i~TvEgl~ 100 (854)
.+.+...+|||-|.
T Consensus 90 ~~~~~~~i~iePl~ 103 (250)
T PRK07570 90 SFKDGDTITIEPWR 103 (250)
T ss_pred hcCCCCeEEEEECC
Confidence 88655678999995
No 46
>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions. Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....
Probab=97.70 E-value=4.8e-05 Score=66.30 Aligned_cols=47 Identities=36% Similarity=0.696 Sum_probs=41.5
Q ss_pred EEECCEEEEEecCCCCCc-HHHHHhhccCCcccccCCCCCCCCccEEEEe
Q 003040 16 FAVNGEKFEVSSVDPSTT-LLEFLRYHTRFKSVKLGCGEGGCGACVVLLS 64 (854)
Q Consensus 16 f~~Ng~~~~~~~~~p~~~-Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~ 64 (854)
+++||+.++++ +.++.+ |+++|++ .+-.++..+|+.|.||.|.|.|.
T Consensus 1 i~i~g~~~~~~-~~~~~~~ll~~~~~-~~gi~i~~~C~~g~Cg~C~v~v~ 48 (78)
T PF00111_consen 1 ITINGKGVTVE-VPPGETLLLDALER-AGGIGIPYSCGGGGCGTCRVRVL 48 (78)
T ss_dssp EETTTEEEEEE-EETTSBBHHHHHHH-TTTTTSTTSSSSSSSSTTEEEEE
T ss_pred CEECCeEEEEE-eCCCccHHHHHHHH-cCCCCcccCCCCCccCCcEEEEe
Confidence 47899999997 688888 9999997 35788999999999999999985
No 47
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=97.69 E-value=5e-05 Score=79.65 Aligned_cols=69 Identities=29% Similarity=0.458 Sum_probs=59.2
Q ss_pred EEEEEecCCCCCcHHHHHh----hccCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccCceeEEe
Q 003040 21 EKFEVSSVDPSTTLLEFLR----YHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTS 96 (854)
Q Consensus 21 ~~~~~~~~~p~~~Ll~~LR----~~~~l~g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~Tv 96 (854)
+.++|+ .++++|+||.|. ++-.--..+.+|.+|.||+|.+.| ||++..+|.+.+..+... ++||
T Consensus 20 ~~yev~-~~~~~~vLdaL~~Ik~e~d~~Lsfr~sCR~gICGSCam~I----------NG~prLAC~t~~~~~~~~-~i~i 87 (234)
T COG0479 20 QTYEVP-YDEGMTVLDALLYIKEEQDPTLSFRRSCREGICGSCAMNI----------NGKPRLACKTLMKDLEEG-VITI 87 (234)
T ss_pred EEEEec-CCCCCcHHHHHHHHHHhcCCccchhhhccCCcCCcceeEE----------CCccccchhchhhhccCC-ceEE
Confidence 356776 679999999884 334556789999999999999999 899999999999999776 9999
Q ss_pred cCCCC
Q 003040 97 EGLGN 101 (854)
Q Consensus 97 Egl~~ 101 (854)
|-|.+
T Consensus 88 ePL~~ 92 (234)
T COG0479 88 EPLPN 92 (234)
T ss_pred EECCC
Confidence 99975
No 48
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=97.60 E-value=7.9e-05 Score=78.96 Aligned_cols=68 Identities=21% Similarity=0.323 Sum_probs=54.3
Q ss_pred EEEEEecCCC-CCcHHHHHhh---ccCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccCceeEEe
Q 003040 21 EKFEVSSVDP-STTLLEFLRY---HTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTS 96 (854)
Q Consensus 21 ~~~~~~~~~p-~~~Ll~~LR~---~~~l~g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~Tv 96 (854)
+.++|+ +.+ ++|+||.|.. +-+--+.+.+|.+|.||+|.|+| ||++..+|.+.+..+.+ -+||
T Consensus 23 ~~y~v~-~~~~~~tvld~L~~ik~~d~~l~fr~sCr~giCGsCa~~i----------NG~~~LaC~t~~~~~~~--~i~i 89 (235)
T PRK12575 23 QRYEIA-PRAEDRMLLDVLGRVKAQDETLSYRRSCREGICGSDAMNI----------NGRNGLACLTNMQALPR--EIVL 89 (235)
T ss_pred EEEEec-CCCCCCcHHHHHHHHHhcCCCeeeeccCCCCCCCCCeeEE----------CCeEcchhhCcHhHcCC--CEEE
Confidence 446665 444 6899998864 23445678999999999999999 89999999999998843 3799
Q ss_pred cCCCC
Q 003040 97 EGLGN 101 (854)
Q Consensus 97 Egl~~ 101 (854)
|-|.+
T Consensus 90 ePl~~ 94 (235)
T PRK12575 90 RPLPG 94 (235)
T ss_pred eECCC
Confidence 99964
No 49
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.52 E-value=0.00014 Score=88.42 Aligned_cols=92 Identities=23% Similarity=0.470 Sum_probs=65.0
Q ss_pred EEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCC------CCCCCCccEEEEeecCCCcccCCceeecccccchh
Q 003040 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC------GEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLC 86 (854)
Q Consensus 13 ~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC------~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~ 86 (854)
+|+|+|||+++++ .+++||++.|+.. |+.-. ..| ..|.|+.|.|.|. + ..+.+.||++++
T Consensus 3 ~v~~~idg~~~~~---~~g~ti~~a~~~~-g~~ip-~~c~~~~~~~~g~C~~C~V~v~------g--~~~~~~aC~t~~- 68 (652)
T PRK12814 3 TISLTINGRSVTA---APGTSILEAAASA-GITIP-TLCFHQELEATGSCWMCIVEIK------G--KNRFVPACSTAV- 68 (652)
T ss_pred eEEEEECCEEEEe---CCcCcHHHHHHHc-CCccc-cccCCCCCCCccccceeEEEEC------C--CcceecCcCCCC-
Confidence 6899999998886 4799999999874 65433 344 4799999999992 1 123589999998
Q ss_pred hccCceeEEecCCCCCCCCcchHhHHHHhcCCCC-CCCCC
Q 003040 87 SVNGCLITTSEGLGNSKTGFHPIHQRFAGFHASQ-CGFCT 125 (854)
Q Consensus 87 ~~~g~~i~TvEgl~~~~~~~h~iq~a~~~~~~~q-CG~Ct 125 (854)
-+|..|.| . ...+..+|+...+.-.++ |++|.
T Consensus 69 -~~Gm~v~t----~--~~~~~~~r~~~le~l~~~~c~~C~ 101 (652)
T PRK12814 69 -SEGMVIET----E--NAELHAMRRQSLERLIEQHCGDCL 101 (652)
T ss_pred -CCCCEEEe----C--cHHHHHHHHHHHHHHHhhcccccC
Confidence 47999999 2 335566664333332222 77775
No 50
>COG1529 CoxL Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]
Probab=97.52 E-value=2.3e-06 Score=104.72 Aligned_cols=202 Identities=15% Similarity=0.111 Sum_probs=124.0
Q ss_pred cccCcCCcCCC-CcccccccccccccceeccccCCCCCCcEEEEEEecCCCCceeccCCCCccCCCCCEEEEEEcCCCCC
Q 003040 595 VQLSREYYPVG-EPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPE 673 (854)
Q Consensus 595 ~~~~~~~~~iG-k~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~~ID~s~A~~~PGVv~v~t~~Dip~ 673 (854)
.+.+..+.++| +..++ |+. ++|+.+.|..|.. .++||++.|.+++..-.+|.. |...+...++++.+..
T Consensus 176 ~~~~~~~E~~g~~a~~~-d~~-~lt~~~~tQ~~~~-~~~~l~~~l~~p~~~vrvi~~-dvGggfG~K~~~~~~~------ 245 (731)
T COG1529 176 RKDPNPMEPHGVVAVPD-DGD-KLTVWASTQIPHR-LRGMLAAVLGIPPSKVRVISP-DVGGGFGSKGVVYVEE------ 245 (731)
T ss_pred CcCccCcccccceeeEc-CCC-eEEEEEccCCchH-HHHHHHHHhCCCHHHeEEecC-CCCcccCCcccceeHH------
Confidence 45677888899 67777 777 9999999999997 789999999866555555555 8887777777643322
Q ss_pred CCCCCCccccCCCcccccCCceeecCCeEEEEEeCCHHHHHHhccccEEEEecCCCCCCcCCHHHHHh-cCCCCcCCCcc
Q 003040 674 GGQNIGSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVD-RSSLFEVPSFL 752 (854)
Q Consensus 674 ~g~n~~~~~~~~d~p~~a~~~V~y~GqpIa~VvAet~~~A~~Aa~~V~V~y~~e~l~p~v~~~~~Al~-~~~~~~~~~~~ 752 (854)
+.+-.-..-.|-||.++-.. +...+.. +...+...+++-+.+ ++.+......
T Consensus 246 ---------------~~~~~aa~~~grpVk~~~tR---------~e~~~~~--~~~~~~~~~~~~~a~~dg~l~~~~~~- 298 (731)
T COG1529 246 ---------------ILAALAAVVAGRPVKWIETR---------EELFVAT--GHRRATLIDVKLGADKDGRLLAIKGT- 298 (731)
T ss_pred ---------------HHHHHHHHhcCCCeEEecch---------HHhhhcc--CCCCCceEEeeeecCcCCcEEeeeee-
Confidence 11111112223333333222 2222221 111011111111111 1111000000
Q ss_pred cCCCCCC-----hhhhc---ccCCeeEEEEEEEECccccCCCCCCeEEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCC
Q 003040 753 YPKPVGD-----ISKGM---NEADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPESAHATIARCLGIP 824 (854)
Q Consensus 753 ~~~~~Gd-----~~~a~---~~a~~~vve~~~~~~~q~H~~mEp~~a~A~~~~dg~l~V~~stQ~p~~~~~~vA~~Lglp 824 (854)
.....|+ +...+ ....+. ++..|..++..|..||| ++.....++. .+||.+...++.+|+.|||+
T Consensus 299 ~~~~~Gay~~~~~~~~~~~~~~g~Y~-i~~~~~~~~~v~tn~~p-~~~~Rg~g~~-----~~~~a~E~~~d~lA~~Lgid 371 (731)
T COG1529 299 VAADTGAYNGPTVPAAAAGLARGPYK-IEAVYIEPYLVHTNMPP-NGAYRGAGRP-----EGTFALERAVDELAEELGID 371 (731)
T ss_pred EEecCCCccccchhHHHHHhcCCcee-cccceeeeEEEEcCCCC-CcccccCCCc-----hhHHHHHHHHHHHHHHhCCC
Confidence 0112222 22222 223344 89999999999999999 6666655442 78999999999999999999
Q ss_pred CCCEEEEeCCcCCCCC
Q 003040 825 EHNVRVITRRVGGAFG 840 (854)
Q Consensus 825 ~~kV~V~~~~~GGgFG 840 (854)
+.+||++....+|+||
T Consensus 372 p~eiR~~n~~~~g~~~ 387 (731)
T COG1529 372 PVEIRLRNLIRGGPFG 387 (731)
T ss_pred HHHHhhhhccccCCCC
Confidence 9999999999999999
No 51
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=97.51 E-value=9.5e-05 Score=79.81 Aligned_cols=68 Identities=22% Similarity=0.380 Sum_probs=54.0
Q ss_pred EEEEecCCC-CCcHHHHHhh---c-cCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccCceeEEe
Q 003040 22 KFEVSSVDP-STTLLEFLRY---H-TRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTS 96 (854)
Q Consensus 22 ~~~~~~~~p-~~~Ll~~LR~---~-~~l~g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~Tv 96 (854)
.++|+ +.+ ++|+||.|+. + -.--+.+.+|.+|.||+|.|.| ||++..+|.+.+..+.+ ..+||
T Consensus 63 ~y~v~-~~~~~~tVLd~L~~Ik~~~D~sLsfr~sCr~giCGsCam~I----------NG~p~LAC~t~v~~~~~-~~i~i 130 (276)
T PLN00129 63 SYKVD-LNDCGPMVLDVLIKIKNEQDPSLTFRRSCREGICGSCAMNI----------DGKNTLACLTKIDRDES-GPTTI 130 (276)
T ss_pred EEEeC-CCCCCchHHHHHHHHHHcCCCCeEEeccCCCCCCCCCeeEE----------CCcccccccccHhhcCC-CcEEE
Confidence 45665 454 7999998864 2 2346689999999999999999 89999999999988743 35679
Q ss_pred cCCCC
Q 003040 97 EGLGN 101 (854)
Q Consensus 97 Egl~~ 101 (854)
|-|.+
T Consensus 131 ePl~~ 135 (276)
T PLN00129 131 TPLPH 135 (276)
T ss_pred EECCC
Confidence 99975
No 52
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=97.44 E-value=0.00036 Score=74.19 Aligned_cols=96 Identities=17% Similarity=0.311 Sum_probs=69.2
Q ss_pred EEEEEECCEEEEEecCCCCCcHHHHHhhccCCc-----ccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhh
Q 003040 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFK-----SVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCS 87 (854)
Q Consensus 13 ~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~-----g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~ 87 (854)
+|+|+|||+.+++ .+++|||+.++.. |+. ..+.-|..|.||.|.|.|. + ..+.+.||.+++.
T Consensus 3 ~v~i~idg~~~~~---~~g~til~a~~~~-gi~ip~~C~~~~~~~~G~C~~C~V~v~---g-----~~~~~~aC~t~v~- 69 (234)
T PRK07569 3 VKTLTIDDQLVSA---REGETLLEAAREA-GIPIPTLCHLDGLSDVGACRLCLVEIE---G-----SNKLLPACVTPVA- 69 (234)
T ss_pred eEEEEECCEEEEe---CCCCHHHHHHHHc-CCCCCcCcCCCCCCCCCccCCcEEEEC---C-----CCccccCcCCCCC-
Confidence 5899999999775 5799999999864 433 2223344999999999992 1 1245679999976
Q ss_pred ccCceeEEecCCCCCCCCcch----HhHHHHhcCCCCCCCCChHH
Q 003040 88 VNGCLITTSEGLGNSKTGFHP----IHQRFAGFHASQCGFCTPGM 128 (854)
Q Consensus 88 ~~g~~i~TvEgl~~~~~~~h~----iq~a~~~~~~~qCG~CtPG~ 128 (854)
+|..|.|= ...+.. +-+.+...|-.-|.-|..+-
T Consensus 70 -~Gm~v~t~------~~~~~~~rk~~l~~ll~~h~~~C~~C~~~g 107 (234)
T PRK07569 70 -EGMVVQTN------TPRLQEYRRMIVELLFAEGNHVCAVCVANG 107 (234)
T ss_pred -CCCEEEEC------CHHHHHHHHHHHHHHHHhccccCcccCCCC
Confidence 79999883 122322 55566788999999998654
No 53
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=97.20 E-value=0.00075 Score=79.41 Aligned_cols=64 Identities=28% Similarity=0.592 Sum_probs=49.5
Q ss_pred EEEEEecCCCCCcHHHHHhhccCCc----ccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccCceeEEe
Q 003040 21 EKFEVSSVDPSTTLLEFLRYHTRFK----SVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTS 96 (854)
Q Consensus 21 ~~~~~~~~~p~~~Ll~~LR~~~~l~----g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~Tv 96 (854)
+.++++ +++++|||+.|++..+.+ ..+.+|..|.||+|+|.+ +|+++.+|.+++. +|..|.+.
T Consensus 21 ~~~~v~-~~~~~tvl~al~~~~~~~~~~l~~~~~C~~g~Cg~C~v~v----------~G~~~laC~~~~~--~~~~i~~~ 87 (486)
T PRK06259 21 ESYEVP-VKEGMTVLDALEYINKTYDANIAFRSSCRAGQCGSCAVTI----------NGEPVLACKTEVE--DGMIIEPL 87 (486)
T ss_pred EEEEEe-CCCCChHHHHHHHhchhcCCCceecCCCCCCCCCCCEEEE----------CCeEecccccCCC--CCCEEEec
Confidence 356665 789999999999643322 237899999999999998 6888999999875 46666665
Q ss_pred c
Q 003040 97 E 97 (854)
Q Consensus 97 E 97 (854)
.
T Consensus 88 ~ 88 (486)
T PRK06259 88 D 88 (486)
T ss_pred C
Confidence 4
No 54
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=97.11 E-value=0.0022 Score=70.67 Aligned_cols=162 Identities=14% Similarity=0.114 Sum_probs=100.4
Q ss_pred ceeecC-CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeccccCceeeeCCCcccccceEecCCcEEeccc
Q 003040 234 AMLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGAT 312 (854)
Q Consensus 234 ~~~~~~-~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~ 312 (854)
.+.+.+ ...++.|.|.+|+.++++-... ..-...++.|||.+.+-.. ..+..+|++++. +..+..+++.+++||+
T Consensus 29 t~~igg~a~~~v~p~~~edl~~~v~~a~~-~~ip~~vlGgGSNllv~d~-g~~gvVI~l~~~--~~~i~~~~~~v~v~AG 104 (302)
T PRK14652 29 AVRVGGPADLLVRPADPDALSALLRAVRE-LGVPLSILGGGANTLVADA-GVRGVVLRLPQD--FPGESTDGGRLVLGAG 104 (302)
T ss_pred EeecCCcceEEEEcCCHHHHHHHHHHHHH-CCCcEEEEcCCcceeecCC-CEeeEEEEecCC--cceEEecCCEEEEECC
Confidence 344555 5678899999999988763211 2346788999999865332 234688998752 5566677789999999
Q ss_pred ccHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCe
Q 003040 313 VTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQK 392 (854)
Q Consensus 313 vTl~~l~~~l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp~~~~sD~~~~LlAldA~v~l~s~~g 392 (854)
+++.+|.+.+.+. .+. -+...++.+ |||||.+++.... +-.++.=.+. .|++...+|
T Consensus 105 ~~~~~L~~~~~~~----------GL~----GlE~l~gIP----GTvGGav~mNaGa-~ggei~d~v~----~v~vv~~~G 161 (302)
T PRK14652 105 APISRLPARAHAH----------GLV----GMEFLAGIP----GTLGGAVAMNAGT-KLGEMKDVVT----AVELATADG 161 (302)
T ss_pred CcHHHHHHHHHHc----------CCc----ccccccCCC----cchhHHHHHcCCC-CceEhhheEE----EEEEECCCC
Confidence 9999999886543 111 123333332 6999999877541 1122222222 455555666
Q ss_pred eEEEehhh-hhc--CCCCCCCceEEEEEcCCCC
Q 003040 393 CEKLMLEE-FLE--RPPLDSRSILLSVEIPCWD 422 (854)
Q Consensus 393 ~R~vpl~d-F~~--~~~L~~~Eii~~I~iP~~~ 422 (854)
.++++-+| +|. ...+..+-||+++.+...+
T Consensus 162 ~~~~~~~e~~f~YR~s~~~~~~II~~a~~~L~~ 194 (302)
T PRK14652 162 AGFVPAAALGYAYRTCRLPPGAVITRVEVRLRP 194 (302)
T ss_pred cEEeehhhcCcccceeccCCCeEEEEEEEEEec
Confidence 66777666 333 2222334577777665543
No 55
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=96.89 E-value=0.0084 Score=65.90 Aligned_cols=138 Identities=17% Similarity=0.141 Sum_probs=88.0
Q ss_pred ceeecC-CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeccccCceeeeCCCcccccceEecCCcEEeccc
Q 003040 234 AMLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGAT 312 (854)
Q Consensus 234 ~~~~~~-~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~ 312 (854)
.+.+.+ ...|+.|.|.+|+.++++-.. +.-...++.|||-|.+-.. ..+..+|.+++ |+.|+.+++.+++||+
T Consensus 27 t~~iGG~A~~~v~p~s~eel~~~~~~~~--~~~p~~vlG~GSNlLv~d~-g~~gvVI~l~~---~~~i~i~~~~v~v~AG 100 (297)
T PRK14653 27 SFKIGGPVPLFAIPNSTNGFIETINLLK--EGIEVKILGNGTNVLPKDE-PMDFVVVSTER---LDDIFVDNDKIICESG 100 (297)
T ss_pred EeeeCcEEEEEEecCCHHHHHHHHHHHh--cCCCEEEEcCCeeEEEecC-CccEEEEEeCC---cCceEEeCCEEEEeCC
Confidence 455666 567899999999999887431 1335778899998876443 23467888755 5667667789999999
Q ss_pred ccHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCe
Q 003040 313 VTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQK 392 (854)
Q Consensus 313 vTl~~l~~~l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp~~~~sD~~~~LlAldA~v~l~s~~g 392 (854)
+++.+|.....+. .+. -++.+++. =|||||++++...+ |-.++.=.+. +|++.+...
T Consensus 101 ~~l~~L~~~~~~~----------GL~----GlE~l~gI----PGTVGGAv~mNAGa-yG~ei~d~l~----~V~~~d~g~ 157 (297)
T PRK14653 101 LSLKKLCLVAAKN----------GLS----GFENAYGI----PGSVGGAVYMNAGA-YGWETAENIV----EVVAYDGKK 157 (297)
T ss_pred CcHHHHHHHHHHC----------CCc----chhhhcCC----chhHHHHHHHhCcc-CchhhheeEE----EEEEECCCE
Confidence 9999999875542 111 12333333 48899999776553 2233332332 555555222
Q ss_pred eEEEehhh
Q 003040 393 CEKLMLEE 400 (854)
Q Consensus 393 ~R~vpl~d 400 (854)
.++++-+|
T Consensus 158 v~~~~~~e 165 (297)
T PRK14653 158 IIRLGKNE 165 (297)
T ss_pred EEEEchhh
Confidence 45555554
No 56
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=96.83 E-value=0.0021 Score=62.14 Aligned_cols=106 Identities=18% Similarity=0.218 Sum_probs=74.4
Q ss_pred eEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeccccCceeeeCCCcccccceEecCCcEEecccccHHHHHHH
Q 003040 242 SWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEA 321 (854)
Q Consensus 242 ~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~ 321 (854)
.+++|+|.+|+.++++.... ..-..++.+||+.+.-... .....+||++++...-.+..++..++++|++++.+|.+.
T Consensus 3 ~vv~P~s~~ev~~~v~~a~~-~~~~v~~~g~G~~~~~~~~-~~~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~~~ 80 (139)
T PF01565_consen 3 AVVRPKSVEEVQAIVKFANE-NGVPVRVRGGGHSWTGQSS-DEGGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLYEA 80 (139)
T ss_dssp EEEEESSHHHHHHHHHHHHH-TTSEEEEESSSTTSSSTTS-STTEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHH-cCCcEEEEcCCCCcccccc-cCCcEEEeeccccccccccccceeEEEeccccchhcccc
Confidence 47899999999998874321 2456788899998862111 356789999986655555566889999999999999998
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHHHHhc-cccccCCcccCCccccccC
Q 003040 322 LKEETKEFHSEALMVFKKIAGHMEKIA-SRFIRNSASVGGNLVMAQR 367 (854)
Q Consensus 322 l~~~~~~~~~~~~~~~p~L~~~l~~ia-s~qIRN~aTiGGNl~~asp 367 (854)
+...- ..+. .+.--.-+|+||.+++..-
T Consensus 81 l~~~g------------------~~~~~~~~~~~~~tvGG~i~~~~~ 109 (139)
T PF01565_consen 81 LAPRG------------------LMLPVEPGSGIPGTVGGAIAGNGH 109 (139)
T ss_dssp HHHHT------------------EEESSGGGSTTTSBHHHHHHTT-E
T ss_pred ccccc------------------ccccccccccccceEchhhcCCCc
Confidence 75320 1111 1333456799999988654
No 57
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=96.57 E-value=0.011 Score=65.10 Aligned_cols=162 Identities=19% Similarity=0.237 Sum_probs=98.5
Q ss_pred ceeecC-CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeccccCceeeeCCCcccccceEecCCcEEeccc
Q 003040 234 AMLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGAT 312 (854)
Q Consensus 234 ~~~~~~-~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~ 312 (854)
.+.+.+ ...++.|+|.+|+.++++.... ..-...++.||+.+.+ ........+||+++ .|+.|+.+++.+++||+
T Consensus 24 t~~igg~a~~vv~P~s~edv~~~v~~a~~-~~~p~~v~GgGsnll~-~d~g~~gvvI~l~~--~l~~i~~~~~~v~v~aG 99 (298)
T PRK13905 24 SFRVGGPADYLVEPADIEDLQEFLKLLKE-NNIPVTVLGNGSNLLV-RDGGIRGVVIRLGK--GLNEIEVEGNRITAGAG 99 (298)
T ss_pred eeecCceEeEEEeCCCHHHHHHHHHHHHH-cCCCEEEEeCCceEEe-cCCCcceEEEEecC--CcceEEecCCEEEEECC
Confidence 344455 5567999999999988763311 1346888999998754 22123478899874 46777777889999999
Q ss_pred ccHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCe
Q 003040 313 VTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQK 392 (854)
Q Consensus 313 vTl~~l~~~l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp~~~~sD~~~~LlAldA~v~l~s~~g 392 (854)
+++.+|.+.+.+. .+. -+...++. -+||||.+++.... |-.++.-.+ -.|++...+|
T Consensus 100 ~~~~~L~~~l~~~----------Gl~----gle~~~gi----pGTVGGai~~NaG~-~G~~~~d~v----~~v~vv~~~G 156 (298)
T PRK13905 100 APLIKLARFAAEA----------GLS----GLEFAAGI----PGTVGGAVFMNAGA-YGGETADVL----ESVEVLDRDG 156 (298)
T ss_pred CcHHHHHHHHHHc----------CCC----cchhccCC----CcchhHHHHHcCCc-CceEhheeE----EEEEEEeCCC
Confidence 9999999987643 110 12223333 37899998754331 111111011 1344455566
Q ss_pred -eEEEehhh-hhc-C-CCCC-CCceEEEEEcCCCC
Q 003040 393 -CEKLMLEE-FLE-R-PPLD-SRSILLSVEIPCWD 422 (854)
Q Consensus 393 -~R~vpl~d-F~~-~-~~L~-~~Eii~~I~iP~~~ 422 (854)
.++++-+| ||. + ..+. ...||+++.+...+
T Consensus 157 ~~~~~~~~e~~~~yR~s~~~~~~gII~~~~l~l~~ 191 (298)
T PRK13905 157 EIKTLSNEELGFGYRHSALQEEGLIVLSATFQLEP 191 (298)
T ss_pred CEEEEEHHHcCCcCccccCCCCCEEEEEEEEEEcC
Confidence 46677666 443 2 2233 24589988876554
No 58
>PRK10713 2Fe-2S ferredoxin YfaE; Provisional
Probab=96.54 E-value=0.0048 Score=54.89 Aligned_cols=47 Identities=32% Similarity=0.622 Sum_probs=38.3
Q ss_pred EEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEE
Q 003040 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLL 63 (854)
Q Consensus 13 ~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v 63 (854)
.|+|.-+|+.+.+. +.+.|||+.|++. |+ ....+|+.|.||+|.+-+
T Consensus 3 ~v~~~~~~~~~~~~--~~~~tlL~a~~~~-gi-~~p~~Cr~G~Cg~C~~~~ 49 (84)
T PRK10713 3 RVTLRITGTQLLCQ--DEHPSLLAALESH-NV-AVEYQCREGYCGSCRTRL 49 (84)
T ss_pred EEEEEeCCcEEEec--CCCCcHHHHHHHc-CC-CCCCCCCCeECCCCEeEE
Confidence 46777778776653 3469999999875 76 788999999999999998
No 59
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=96.32 E-value=0.0078 Score=55.05 Aligned_cols=48 Identities=15% Similarity=0.364 Sum_probs=37.9
Q ss_pred EEEE-EECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEE
Q 003040 13 SVVF-AVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLL 63 (854)
Q Consensus 13 ~i~f-~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v 63 (854)
.|+| +=+|...+++ ++++.+||+.|++. |+ ....+|+.|.||.|.|-|
T Consensus 4 ~v~~~~~~~~~~~~~-~~~g~tLLda~~~~-Gi-~i~~~C~~G~Cg~C~v~v 52 (97)
T TIGR02008 4 KVTLVNPDGGEETIE-CPDDQYILDAAEEA-GI-DLPYSCRAGACSTCAGKV 52 (97)
T ss_pred EEEEEECCCCEEEEE-ECCCCcHHHHHHHc-CC-CCCcCCCCccCCCCceEE
Confidence 3444 2377566665 67999999999865 75 478899999999999999
No 60
>CHL00134 petF ferredoxin; Validated
Probab=96.31 E-value=0.0091 Score=54.85 Aligned_cols=48 Identities=15% Similarity=0.380 Sum_probs=39.5
Q ss_pred EEEEEE--CCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEE
Q 003040 13 SVVFAV--NGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLL 63 (854)
Q Consensus 13 ~i~f~~--Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v 63 (854)
.|+|.. +|..+.++ ++++.|||+.|++. |+ ....+|+.|.||.|.|-+
T Consensus 5 ~v~~~~~~~~~~~~~~-~~~~~tLL~a~~~~-Gi-~i~~~C~~G~Cg~C~v~v 54 (99)
T CHL00134 5 KVTLLSEEEGIDVTID-CPDDVYILDAAEEQ-GI-DLPYSCRAGACSTCAGKV 54 (99)
T ss_pred EEEEEecCCCCeEEEE-ECCCCcHHHHHHHc-CC-CCCcCCCCccCCCCEEEE
Confidence 444444 77777776 68999999999875 75 788899999999999999
No 61
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=96.05 E-value=0.01 Score=69.07 Aligned_cols=109 Identities=17% Similarity=0.132 Sum_probs=78.5
Q ss_pred CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeccccCceeeeCCCcccccceEecCCcEEecccccHHHHH
Q 003040 240 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAI 319 (854)
Q Consensus 240 ~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~ 319 (854)
...+..|.|.+|+.++++.... .+-...+.+|||++.--..-. ..++||++++..+..|..++..+++.+++++.+|.
T Consensus 32 p~~v~~p~s~~eV~~iv~~a~~-~~~~v~prG~gts~~g~~~~~-~gvvl~l~~mn~i~~id~~~~~~~v~aGv~l~~l~ 109 (459)
T COG0277 32 PLAVVFPKSEEEVAAILRLANE-NGIPVVPRGGGTSLSGGAVPD-GGVVLDLSRLNRILEIDPEDGTATVQAGVTLEDLE 109 (459)
T ss_pred CCEEEccCCHHHHHHHHHHHHH-cCCeEEEECCCCCccccccCC-CcEEEEchhhcchhccCcCCCEEEEcCCccHHHHH
Confidence 3468899999999998874311 122367789999985421101 27899999966555566678999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccC
Q 003040 320 EALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQR 367 (854)
Q Consensus 320 ~~l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp 367 (854)
+.+...-. ..-..|+.++.+||||||++.+-
T Consensus 110 ~~l~~~G~-----------------~~p~~p~s~~~~tIGG~ia~~~~ 140 (459)
T COG0277 110 KALAPHGL-----------------FLPVDPSSSGTATIGGNIATNAG 140 (459)
T ss_pred HHHHHcCC-----------------ccCCCccccccceEccchhcCCC
Confidence 88764310 11136677799999999999875
No 62
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=96.04 E-value=0.0097 Score=74.23 Aligned_cols=103 Identities=20% Similarity=0.314 Sum_probs=74.9
Q ss_pred eEEEEEECCEEEEEecCCCCCcHHHHHhhc----cCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhh
Q 003040 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYH----TRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCS 87 (854)
Q Consensus 12 ~~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~----~~l~g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~ 87 (854)
.+|+|+|||+.+++ .+++||++..+.. ..|...+..+.-|.|.-|.|.|.. ..+.+.||.+|+.
T Consensus 3 ~~v~~~idg~~~~~---~~g~til~aa~~~gi~ip~~C~~~~l~~~g~Cr~C~Vev~g--------~~~~~~aC~t~v~- 70 (797)
T PRK07860 3 DLVTLTIDGVEVSV---PKGTLVIRAAELLGIQIPRFCDHPLLDPVGACRQCLVEVEG--------QRKPQASCTTTVT- 70 (797)
T ss_pred ceEEEEECCEEEEe---CCCChHHHHHHHcCCCCCeecCCCCCCCCcccCccEEEECC--------CcccccccCCCCC-
Confidence 36899999999886 4799999999752 235555556678999999999931 1246889999976
Q ss_pred ccCceeEEe---cCCCCCCCCcchHhHHHHhcCCCCCCCCChHHHH
Q 003040 88 VNGCLITTS---EGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCM 130 (854)
Q Consensus 88 ~~g~~i~Tv---Egl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm 130 (854)
+|..|.|- |-+. ..-+-+-+.+...|-..|..|.-+-=+
T Consensus 71 -~gm~V~t~~~s~~v~---~~r~~~le~ll~~hp~dC~~C~~~g~C 112 (797)
T PRK07860 71 -DGMVVKTQLTSPVAD---KAQHGVMELLLINHPLDCPVCDKGGEC 112 (797)
T ss_pred -CCcEEEeCCCCHHHH---HHHHHHHHHHHhcCCCCCCCCCCCCCc
Confidence 69999983 2221 112346666778899999999876433
No 63
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=95.95 E-value=0.056 Score=59.25 Aligned_cols=139 Identities=15% Similarity=0.213 Sum_probs=83.6
Q ss_pred eeecC-CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeccccCceeeeCCCcccccceEecCCcEEecccc
Q 003040 235 MLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATV 313 (854)
Q Consensus 235 ~~~~~-~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~v 313 (854)
+.+.+ ...|+.|.|.+|+.++++-... ..-...+++|||.+.+... .....+|++.+... .+...++.+++||++
T Consensus 7 ~~igg~a~~~v~p~s~edl~~~l~~a~~-~~~p~~vlGgGSNll~~d~-~~~gvvi~l~~~~~--~~~~~~~~v~v~aG~ 82 (284)
T TIGR00179 7 YKIGGNARHIVCPESIEQLVNVLDNAKE-EDQPLLILGEGSNLLILDD-GRGGVIINLGKGID--IEDDEGEYVHVGGGE 82 (284)
T ss_pred eecCceeeEEEEeCCHHHHHHHHHHHHH-cCCCEEEEecceEEEEccC-CcCeEEEECCCCce--EEEecCCEEEEEcCC
Confidence 33444 5678999999999988763211 2346889999999876432 33468899876422 222335789999999
Q ss_pred cHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCe-
Q 003040 314 TISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQK- 392 (854)
Q Consensus 314 Tl~~l~~~l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp~~~~sD~~~~LlAldA~v~l~s~~g- 392 (854)
++.+|.+.+.+. .+. -+...++. -|||||++++.... |-.++.-.| . .|++...+|
T Consensus 83 ~~~~l~~~~~~~----------Gl~----GlE~l~gi----PGtvGGai~mNAGa-yG~~i~d~l--~--~v~vv~~~G~ 139 (284)
T TIGR00179 83 NWHKLVKYALKN----------GLS----GLEFLAGI----PGTVGGAVIMNAGA-YGVEISEVL--V--YATILLATGK 139 (284)
T ss_pred cHHHHHHHHHHC----------CCc----ccccCCCC----CchHHHHHHHhccc-chhehhheE--E--EEEEEeCCCC
Confidence 999999876542 111 12222222 25899999886653 111111111 1 234445555
Q ss_pred eEEEehhh
Q 003040 393 CEKLMLEE 400 (854)
Q Consensus 393 ~R~vpl~d 400 (854)
.++++-+|
T Consensus 140 ~~~~~~~~ 147 (284)
T TIGR00179 140 TEWLTNEQ 147 (284)
T ss_pred EEEEEHHH
Confidence 46677766
No 64
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=95.93 E-value=0.071 Score=58.68 Aligned_cols=88 Identities=10% Similarity=0.097 Sum_probs=62.6
Q ss_pred cceeecC-CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeccccCceeeeCCCcccccceEecCCcEEecc
Q 003040 233 SAMLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGA 311 (854)
Q Consensus 233 ~~~~~~~-~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA 311 (854)
.++.+.+ ...|+.|.|.+|+.++++.... ..-...++.||+-+.+-........+|-+.+ ++.|+..++.|++||
T Consensus 25 tt~~iGG~A~~~~~p~~~~eL~~~l~~~~~-~~~p~~vlG~GSNlLv~D~g~~~g~vi~~~~---~~~i~~~~~~v~a~A 100 (302)
T PRK14650 25 TTYKIGGISKLFLTPKTIKDAEHIFKAAIE-EKIKIFILGGGSNILINDEEEIDFPIIYTGH---LNKIEIHDNQIVAEC 100 (302)
T ss_pred ceeeeCcEEEEEEecCCHHHHHHHHHHHHH-cCCCEEEEeceeEEEEECCCccceEEEEECC---cCcEEEeCCEEEEEe
Confidence 3456666 6778999999999988864311 1345778888888866443224456676543 667777778899999
Q ss_pred cccHHHHHHHHHH
Q 003040 312 TVTISKAIEALKE 324 (854)
Q Consensus 312 ~vTl~~l~~~l~~ 324 (854)
++.+.+|.....+
T Consensus 101 G~~~~~l~~~~~~ 113 (302)
T PRK14650 101 GTNFEDLCKFALQ 113 (302)
T ss_pred CCcHHHHHHHHHH
Confidence 9999999887543
No 65
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=95.90 E-value=0.014 Score=68.86 Aligned_cols=159 Identities=11% Similarity=0.207 Sum_probs=94.5
Q ss_pred CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeccccCceeeeCCCcccccceEecCCcEEecccccHHHHH
Q 003040 240 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAI 319 (854)
Q Consensus 240 ~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~ 319 (854)
...+++|+|.+|+.++++.... .+...++++||++..-.. .....+||++++..+-.|..+...++++|++++.+|.
T Consensus 62 p~~~~~P~s~eEV~~iV~~A~~-~g~~Vr~~GsGhS~sg~a--~t~g~lldL~~ln~Vl~vD~~~~tVtV~AG~~l~~L~ 138 (541)
T TIGR01676 62 TRTFHQPEAIEELEGIVKQANE-KKARIRPVGSGLSPNGIG--LSRAGMVNLALMDKVLEVDEEKKRVRVQAGIRVQQLV 138 (541)
T ss_pred cceEECCCCHHHHHHHHHHHHH-cCCcEEEECCCcCCCCcc--cCCCeEEEhhhCCCCEEEcCCCCEEEEcCCCCHHHHH
Confidence 3568999999999999885421 134688899998874311 1124589999877766667777899999999999999
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCe-eEEEeh
Q 003040 320 EALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQK-CEKLML 398 (854)
Q Consensus 320 ~~l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp~~~~sD~~~~LlAldA~v~l~s~~g-~R~vpl 398 (854)
+.+...- ..+.+..--+..||||+|+++.-.. -.. ...+...=-.++|...+| .+++.-
T Consensus 139 ~~L~~~G------------------lal~n~gsi~~~TIGGaiatgtHGt-g~~-~G~l~d~V~~l~lVta~G~vv~~s~ 198 (541)
T TIGR01676 139 DAIKEYG------------------ITLQNFASIREQQIGGIIQVGAHGT-GAK-LPPIDEQVIAMKLVTPAKGTIEISK 198 (541)
T ss_pred HHHHHcC------------------CEeccCCCCCCceEccccccCCcCC-CCC-CCCHHHhEEEEEEEECCCCEEEECC
Confidence 8875420 0111222225578999999874320 011 111221112344455443 344432
Q ss_pred ---hhhhc--CCCCCCCceEEEEEcCCC
Q 003040 399 ---EEFLE--RPPLDSRSILLSVEIPCW 421 (854)
Q Consensus 399 ---~dF~~--~~~L~~~Eii~~I~iP~~ 421 (854)
.|.|. ...+..=-||++|.|...
T Consensus 199 ~~~pdLF~AargslG~LGVItevTLr~~ 226 (541)
T TIGR01676 199 DKDPELFFLARCGLGGLGVVAEVTLQCV 226 (541)
T ss_pred CCCHHHHHHHhcCCCceEeEEEEEEEEE
Confidence 13443 222333347777777543
No 66
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=95.88 E-value=0.016 Score=68.54 Aligned_cols=108 Identities=10% Similarity=0.012 Sum_probs=73.5
Q ss_pred ceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeccccCceeeeCCCcccccceEecCCcEEecccccHHHHHH
Q 003040 241 GSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIE 320 (854)
Q Consensus 241 ~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~ 320 (854)
...++|.|.+|..++++-... .+-...+.+|||++.--..-.....+||++++..+..+..++..++++|++|+.+|.+
T Consensus 57 ~~Vv~P~s~eeV~~iv~~a~~-~~ipv~~rG~Gt~~~gg~~~~~~gividl~~ln~I~~id~~~~~v~VeaGv~~~~L~~ 135 (499)
T PRK11230 57 LLVVLPKQMEQVQALLAVCHR-LRVPVVARGAGTGLSGGALPLEKGVLLVMARFNRILDINPVGRRARVQPGVRNLAISQ 135 (499)
T ss_pred CEEEeeCCHHHHHHHHHHHHH-cCCeEEEECCCcCcCCCcccCCCcEEEEcccCCCceEEcCCCCEEEEcCCccHHHHHH
Confidence 357899999999988873211 1234567789998722100012468999998666555666778899999999999999
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCcccccc
Q 003040 321 ALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQ 366 (854)
Q Consensus 321 ~l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~as 366 (854)
.+.+.- + .....+.-...+||||+|++..
T Consensus 136 ~l~~~G----------l-------~~~~~p~s~~~~tvGG~ia~na 164 (499)
T PRK11230 136 AAAPHG----------L-------YYAPDPSSQIACSIGGNVAENA 164 (499)
T ss_pred HHHHcC----------C-------eeCCCCCccccceEcceeccCC
Confidence 876531 1 1113344556799999999763
No 67
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=95.74 E-value=0.062 Score=59.50 Aligned_cols=153 Identities=15% Similarity=0.190 Sum_probs=91.3
Q ss_pred CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeccccCceeeeCCCcccccceEecCCcEEecccccHHHHH
Q 003040 240 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAI 319 (854)
Q Consensus 240 ~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~ 319 (854)
...|+.|.|.+|+.++++-... ..-...++.|||.+.+-.. .....+|++++ |+.|+.+++.+++||++++.+|.
T Consensus 37 A~~~v~p~~~edv~~~v~~a~~-~~ip~~vlGgGSNll~~d~-g~~GvvI~l~~---l~~i~~~~~~v~v~aG~~~~~l~ 111 (307)
T PRK13906 37 ADFYITPTKNEEVQAVVKYAYQ-NEIPVTYLGNGSNIIIREG-GIRGIVISLLS---LDHIEVSDDAIIAGSGAAIIDVS 111 (307)
T ss_pred eEEEEEcCCHHHHHHHHHHHHH-cCCCEEEEcCceeEeecCC-CcceEEEEecC---ccceEEeCCEEEEECCCcHHHHH
Confidence 4578999999999988763211 1345788999998875332 23478899865 67777778899999999999999
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCe-eEEEeh
Q 003040 320 EALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQK-CEKLML 398 (854)
Q Consensus 320 ~~l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp~~~~sD~~~~LlAldA~v~l~s~~g-~R~vpl 398 (854)
+...+. .+-. +...++. -|||||++.+.... |-.++.=.+. .|++...+| .++++-
T Consensus 112 ~~~~~~----------Gl~G----lE~~~gI----PGtVGGav~mNaGa-yGg~i~D~l~----~v~vv~~~G~~~~~~~ 168 (307)
T PRK13906 112 RVARDY----------ALTG----LEFACGI----PGSIGGAVYMNAGA-YGGEVKDCID----YALCVNEQGSLIKLTT 168 (307)
T ss_pred HHHHHc----------CCcc----chhhcCC----CccHhHHHHhhCCc-chhhhhhhee----EEEEEeCCCCEEEEEH
Confidence 875542 1111 1111221 36899999877653 1111111111 334444445 566777
Q ss_pred hh-hhc--CCCCCC-CceEEEEEcCC
Q 003040 399 EE-FLE--RPPLDS-RSILLSVEIPC 420 (854)
Q Consensus 399 ~d-F~~--~~~L~~-~Eii~~I~iP~ 420 (854)
+| .|. ...+.. +.||+++.+-.
T Consensus 169 ~e~~f~YR~S~~~~~~~ii~~~~~~l 194 (307)
T PRK13906 169 KELELDYRNSIIQKEHLVVLEAAFTL 194 (307)
T ss_pred HHccCcCCcccCCCCCEEEEEEEEEE
Confidence 76 222 223332 23555555443
No 68
>PLN03136 Ferredoxin; Provisional
Probab=95.60 E-value=0.024 Score=55.85 Aligned_cols=49 Identities=18% Similarity=0.366 Sum_probs=37.8
Q ss_pred EEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEe
Q 003040 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLS 64 (854)
Q Consensus 13 ~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~ 64 (854)
+|+|.-++..++++ +.++++|||.+++. |+ ....+|+.|.||.|.+-+-
T Consensus 56 ~V~l~~~~~~~~~~-~~~g~tILdAa~~~-Gi-~lp~sCr~G~CGtC~~~l~ 104 (148)
T PLN03136 56 KVKFITPEGEQEVE-CEEDVYVLDAAEEA-GI-DLPYSCRAGSCSSCAGKVV 104 (148)
T ss_pred EEEEecCCCcEEEE-eCCCCcHHHHHHHc-CC-CCCcCCCCccCCCCEEEEe
Confidence 35554355445665 67899999999876 74 4888999999999999983
No 69
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=95.50 E-value=0.037 Score=52.51 Aligned_cols=81 Identities=20% Similarity=0.326 Sum_probs=55.6
Q ss_pred EEEE-EECCEEEEEecCCCCCcHHHHHhhccCCcccccCCC-CCCCCccEEEEe-e-cC-C---C----------cccCC
Q 003040 13 SVVF-AVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCG-EGGCGACVVLLS-K-YN-P---E----------LDQLE 74 (854)
Q Consensus 13 ~i~f-~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~-~G~CGaCtV~v~-~-~~-~---~----------~~~~~ 74 (854)
+|+| ..+|+.++++ +.+++||++.+++. |+. .-..|+ .|.||.|-|.|. . +- . . .....
T Consensus 2 ~V~fi~~~G~~~~v~-~~~G~tLl~a~~~~-gi~-i~~~CgG~g~C~tC~V~V~~~~~~~~l~~~~~~E~~~L~~~~~~~ 78 (117)
T PLN02593 2 SVTFVDKDGEERTVK-APVGMSLLEAAHEN-DIE-LEGACEGSLACSTCHVIVMDEKVYNKLPEPTDEENDMLDLAFGLT 78 (117)
T ss_pred EEEEEcCCCCEEEEE-ECCCCcHHHHHHHc-CCC-CCccCCCcceeCCCEEEEecCccccCCCCCChHHHHHHhcccCCC
Confidence 5777 4789888887 68999999999975 764 677899 599999999992 1 10 0 0 01122
Q ss_pred ceeecccccchhh-ccCceeEEe
Q 003040 75 DFTISSCLTLLCS-VNGCLITTS 96 (854)
Q Consensus 75 ~~~v~sCl~~~~~-~~g~~i~Tv 96 (854)
.....||.+.+.. ++|..|..-
T Consensus 79 ~~sRLaCQ~~v~~~~~~~~v~ip 101 (117)
T PLN02593 79 ETSRLGCQVIAKPELDGMRLALP 101 (117)
T ss_pred CCeEecceeEeecCCCCEEEEcC
Confidence 3445889887643 466666543
No 70
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=95.48 E-value=0.025 Score=68.45 Aligned_cols=92 Identities=24% Similarity=0.382 Sum_probs=68.5
Q ss_pred EEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCC------CCCCCccEEEEeecCCCcccCCc-eeecccccchhhc
Q 003040 16 FAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCG------EGGCGACVVLLSKYNPELDQLED-FTISSCLTLLCSV 88 (854)
Q Consensus 16 f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~------~G~CGaCtV~v~~~~~~~~~~~~-~~v~sCl~~~~~~ 88 (854)
|+|||+.+++ .+++||++.+++. |+.-. .-|. .|.|.-|.|.|.. .. +.+.||.+|+.
T Consensus 1 ~~idg~~~~~---~~g~~il~a~~~~-gi~ip-~~C~~~~l~~~g~Cr~C~v~v~g--------~~~~~~~aC~~~~~-- 65 (603)
T TIGR01973 1 IFIDGKELEV---PKGTTVLQACLSA-GIEIP-RFCYHEKLSIAGNCRMCLVEVEK--------FPDKPVASCATPVT-- 65 (603)
T ss_pred CEECCEEEEe---CCCCHHHHHHHHc-CCCcc-ccCCCCCCCCCCccccCEEEECC--------CCCCcccccCCCCC--
Confidence 5899999886 4799999999864 55333 4575 8999999999931 11 27999999976
Q ss_pred cCceeEEecCCCCCCCCcc----hHhHHHHhcCCCCCCCCChHH
Q 003040 89 NGCLITTSEGLGNSKTGFH----PIHQRFAGFHASQCGFCTPGM 128 (854)
Q Consensus 89 ~g~~i~TvEgl~~~~~~~h----~iq~a~~~~~~~qCG~CtPG~ 128 (854)
+|..|.| . ....+ -+.+.|...|-.-|..|.-+-
T Consensus 66 ~gm~v~t----~--~~~~~~~r~~~~e~ll~~h~~dC~~C~~~g 103 (603)
T TIGR01973 66 DGMKIST----N--SEKVKKAREGVMEFLLINHPLDCPICDQGG 103 (603)
T ss_pred CCCEEEe----C--CHHHHHHHHHHHHHHHhcCCCCCCcCCCCC
Confidence 6999998 1 22333 355566778999999999864
No 71
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=95.45 E-value=0.021 Score=64.20 Aligned_cols=47 Identities=26% Similarity=0.434 Sum_probs=39.9
Q ss_pred EEEEE---CCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEE
Q 003040 14 VVFAV---NGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLL 63 (854)
Q Consensus 14 i~f~~---Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v 63 (854)
.+++| ||+.+.++ +.++.|||+.|++. |+ ....+|++|.||.|.|-+
T Consensus 3 ~~v~~~~~~~~~~~~~-~~~g~tlL~a~~~~-g~-~~p~~C~~G~Cg~C~~~~ 52 (340)
T PRK11872 3 HKVALSFADGKTLFFP-VGKDELLLDAALRN-GI-NLPLDCREGVCGTCQGRC 52 (340)
T ss_pred eEEEEEecCCcEEEEE-eCCCCcHHHHHHHc-CC-CCcCCCCCeECCCCEEEE
Confidence 45666 89988876 68999999999865 75 678899999999999988
No 72
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=95.42 E-value=0.019 Score=71.65 Aligned_cols=106 Identities=19% Similarity=0.275 Sum_probs=73.4
Q ss_pred EEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCC------CCCCCccEEEEeecCCCcccCCceeecccccchh
Q 003040 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCG------EGGCGACVVLLSKYNPELDQLEDFTISSCLTLLC 86 (854)
Q Consensus 13 ~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~------~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~ 86 (854)
+|+|+|||+.+++ .+++||++.++.. |..-. .=|- .|.|.-|.|.|.. ..+.+.||.+|+.
T Consensus 1 m~~~~idg~~~~~---~~g~~il~a~~~~-g~~ip-~~c~~~~~~~~~~C~~C~v~v~~--------~~~~~~aC~~~~~ 67 (776)
T PRK09129 1 MVEIEIDGKKVEV---PEGSMVIEAADKA-GIYIP-RFCYHKKLSIAANCRMCLVEVEK--------APKPLPACATPVT 67 (776)
T ss_pred CeEEEECCEEEEe---CCCCHHHHHHHHc-CCCCC-cccCCCCCCCCCCcceeEEEECC--------CCCcCcccCCCCC
Confidence 4899999999986 4799999999863 43322 1344 5899999999921 1245889999976
Q ss_pred hccCceeEEecCCCCCCCCcchHhHHHHhcCCCCCCCCChHHHHHHHHH
Q 003040 87 SVNGCLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSA 135 (854)
Q Consensus 87 ~~~g~~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~l 135 (854)
+|..|.|-..-- ...-.-+-+.|...|-..|..|.-+--+-+-.+
T Consensus 68 --~gm~v~t~~~~~--~~~r~~~l~~ll~~h~~~C~~c~~~g~C~Lq~~ 112 (776)
T PRK09129 68 --DGMKVFTRSEKA--LKAQKSVMEFLLINHPLDCPICDQGGECQLQDL 112 (776)
T ss_pred --CCCEEEcCCHHH--HHHHHHHHHHHHhcCCCCcccCCCCCCCHHHHH
Confidence 699999821100 011233555677889999999998775544433
No 73
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=95.35 E-value=0.037 Score=67.89 Aligned_cols=96 Identities=23% Similarity=0.322 Sum_probs=71.1
Q ss_pred EEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCC------CCCCCccEEEEeecCCCcccCCceeecccccchh
Q 003040 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCG------EGGCGACVVLLSKYNPELDQLEDFTISSCLTLLC 86 (854)
Q Consensus 13 ~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~------~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~ 86 (854)
+++++|||+.+++ .+++|+|+..|.. |+.= -.=|- .|.|.-|.|.|... ..+.+.||.+|+.
T Consensus 1 m~~~~Idg~~v~v---~~g~til~a~~~~-gi~I-P~lCy~~~l~~~g~Cr~ClVev~~~-------~~~~~~sC~~~v~ 68 (687)
T PRK09130 1 MVKLKVDGKEIEV---PDGYTLLQACEAA-GAEI-PRFCYHERLSIAGNCRMCLVEVKGG-------PPKPVASCAMPVG 68 (687)
T ss_pred CeEEEECCEEEEe---CCCCHHHHHHHHc-CCCc-CcccCCCCCCCCCCCCCCEEEECCC-------CCCcccccCCCCC
Confidence 4789999999886 4799999999864 6553 33464 79999999999311 0358999999976
Q ss_pred hccCceeEEecCCCCCCCCc----chHhHHHHhcCCCCCCCCChHH
Q 003040 87 SVNGCLITTSEGLGNSKTGF----HPIHQRFAGFHASQCGFCTPGM 128 (854)
Q Consensus 87 ~~~g~~i~TvEgl~~~~~~~----h~iq~a~~~~~~~qCG~CtPG~ 128 (854)
+|..|.| . .... .-+-+.+...|-.-|..|.-|=
T Consensus 69 --~gm~v~T----~--s~~v~~~r~~~le~ll~~Hp~dC~~C~~~g 106 (687)
T PRK09130 69 --EGMVIFT----N--TPMVKKAREGVMEFLLINHPLDCPICDQGG 106 (687)
T ss_pred --CCCEEEe----C--CHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 6999998 2 2222 3355567788989999998654
No 74
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=95.34 E-value=0.018 Score=66.50 Aligned_cols=103 Identities=14% Similarity=0.164 Sum_probs=69.5
Q ss_pred EecCCHHHHHHHHhhhcCCCCCcceEEccCccceE--eeccccCceeeeCCCcccccceEecCCcEEecccccHHHHHHH
Q 003040 244 HSPISVQELRNVLESVEGSNQISSKLVAGNTGMGY--YKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEA 321 (854)
Q Consensus 244 ~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~--~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~ 321 (854)
++|.|.+|+.++++.... .+-...+.+|||++.= .. .....+||++++.....|..++..++++|++++.+|.+.
T Consensus 2 v~P~s~eev~~iv~~a~~-~~i~v~~~G~Gt~~~g~~~~--~~~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~~ 78 (413)
T TIGR00387 2 VFPKNTEQVARILKLCHE-HRIPIVPRGAGTGLSGGALP--EEGGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQA 78 (413)
T ss_pred CCCCCHHHHHHHHHHHHH-cCCcEEEECCCCCCCCCccC--CCCeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHHH
Confidence 469999999988773211 1345788899998741 11 124678898775444444455689999999999999998
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCcccccc
Q 003040 322 LKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQ 366 (854)
Q Consensus 322 l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~as 366 (854)
+.++- ..+| -.++-...+||||+|++..
T Consensus 79 l~~~g--------l~~~---------~~p~s~~~~tiGG~ia~na 106 (413)
T TIGR00387 79 VEEHN--------LFYP---------PDPSSQISSTIGGNIAENA 106 (413)
T ss_pred HHHcC--------CeeC---------CCCcccccceehhhhhcCC
Confidence 76430 1111 1445556799999998754
No 75
>PTZ00038 ferredoxin; Provisional
Probab=95.26 E-value=0.042 Score=56.21 Aligned_cols=53 Identities=13% Similarity=0.286 Sum_probs=39.8
Q ss_pred CceeEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEe
Q 003040 9 GTRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLS 64 (854)
Q Consensus 9 ~~~~~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~ 64 (854)
+....|+|.++...++++ +.++++||+.+++. |+ ....+|+.|.||.|.|-+.
T Consensus 93 ~~~~~Vt~~~~~g~~~~~-v~~geTILdAae~a-GI-~lp~sCr~G~CGtCkvrV~ 145 (191)
T PTZ00038 93 PLFYNITLQTPDGEKVIE-CDEDEYILDAAERQ-GV-ELPYSCRGGSCSTCAAKLL 145 (191)
T ss_pred CceEEEEEEeCCCcEEEE-eCCCCcHHHHHHHc-CC-CCCcCCCCccCCCCEeEEe
Confidence 344567776442234454 67899999999875 75 7888999999999999883
No 76
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=95.25 E-value=0.16 Score=60.55 Aligned_cols=159 Identities=15% Similarity=0.282 Sum_probs=91.8
Q ss_pred CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeccccCceeeeCCCcccccceEecCCcEEecccccHHHHH
Q 003040 240 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAI 319 (854)
Q Consensus 240 ~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~ 319 (854)
...+++|+|.+|+.++++.... .+...+++++|.+..-.- .....+||++++..+-.|..+...++++|++++.+|.
T Consensus 97 p~~vv~P~S~eEV~~iV~~A~~-~g~~VrvvGsGhS~~~l~--~td~glIdL~~l~~Il~vD~e~~~VtV~AG~~l~~L~ 173 (573)
T PLN02465 97 TRRYHQPESLEELEDIVKEAHE-KGRRIRPVGSGLSPNGLA--FSREGMVNLALMDKVLEVDKEKKRVTVQAGARVQQVV 173 (573)
T ss_pred CCEEEEeCCHHHHHHHHHHHHH-cCCcEEEEcCCcCCCCee--eCCCEEEECcCCCCcEEEeCCCCEEEEccCCCHHHHH
Confidence 3468999999999999875321 234688888887542210 1123579998755544455556789999999999999
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCch-HHHHHhcCcEEEEEeCCe-eEEEe
Q 003040 320 EALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDV-ATVLLGAGAMVNIMTGQK-CEKLM 397 (854)
Q Consensus 320 ~~l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp~~~~sD~-~~~LlAldA~v~l~s~~g-~R~vp 397 (854)
+.+.++- | ++...++ | +.+||||.|+++.-. +.. ...+-..=-.++|...+| ..++.
T Consensus 174 ~~L~~~G-------------L--al~n~g~--I-~~~TIGGaIstGtHG---tG~~~g~i~d~V~~l~lVta~G~vv~~s 232 (573)
T PLN02465 174 EALRPHG-------------L--TLQNYAS--I-REQQIGGFIQVGAHG---TGARIPPIDEQVVSMKLVTPAKGTIELS 232 (573)
T ss_pred HHHHHcC-------------C--EeccCCC--C-CCeeecchhhCCCCC---cCCCcCcHhheEEEEEEEECCCCEEEEC
Confidence 8876430 0 0112222 1 357999999765432 110 011111111234444443 44554
Q ss_pred hh---hhhc--CCCCCCCceEEEEEcCCCC
Q 003040 398 LE---EFLE--RPPLDSRSILLSVEIPCWD 422 (854)
Q Consensus 398 l~---dF~~--~~~L~~~Eii~~I~iP~~~ 422 (854)
-+ |.|. ...+..--||+++.|-..+
T Consensus 233 ~~~~pdLF~aar~glG~lGVIteVTLql~P 262 (573)
T PLN02465 233 KEDDPELFRLARCGLGGLGVVAEVTLQCVP 262 (573)
T ss_pred CCCCHHHHhHhhccCCCCcEEEEEEEEEEe
Confidence 32 3343 2233333499999886543
No 77
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=95.22 E-value=0.044 Score=64.18 Aligned_cols=109 Identities=19% Similarity=0.089 Sum_probs=70.7
Q ss_pred ceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceE--eec---cccCceeeeCCCcccccceEecCCcEEecccccH
Q 003040 241 GSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGY--YKE---VEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTI 315 (854)
Q Consensus 241 ~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~--~k~---~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl 315 (854)
.-.++|.|.+|..++++--.. .+-....-+|||+|.= ... ..+..++||+.++..+..|. ++..+++.+++|+
T Consensus 40 ~AVV~P~SteEVa~IVklC~e-~~vPVIPRGgGTGLtGGAvP~~~~~dR~gVVIsl~RMNrIleID-~~~~VvVePGVtl 117 (564)
T PRK11183 40 LAVVFPGTLLELWRVLQACVA-ADKIIIMQAANTGLTGGSTPNGNDYDRDIVIISTLRLDKIQLLN-NGKQVLALPGTTL 117 (564)
T ss_pred CEEEecCCHHHHHHHHHHHHH-cCCeEEEeCCCcccccCcccCCCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCCCcH
Confidence 467899999999988873210 1223455599998721 221 12346899998866665555 4578999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccC
Q 003040 316 SKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQR 367 (854)
Q Consensus 316 ~~l~~~l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp 367 (854)
.+|.+.++.. ..+|.. .++|.+|- +||||||++.+.
T Consensus 118 ~~LeeaLk~~---------Gl~p~s-----d~GSS~IG--asIGGnIAtNAG 153 (564)
T PRK11183 118 YQLEKALKPL---------GREPHS-----VIGSSCIG--ASVIGGICNNSG 153 (564)
T ss_pred HHHHHHHHHh---------CCCCCC-----cccccccC--CCCccceEECCc
Confidence 9999988653 112111 01232222 489999998876
No 78
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=95.22 E-value=0.027 Score=70.91 Aligned_cols=104 Identities=21% Similarity=0.353 Sum_probs=73.2
Q ss_pred EEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCC------CCCCCccEEEEeecCCCcccCCceeecccccchh
Q 003040 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCG------EGGCGACVVLLSKYNPELDQLEDFTISSCLTLLC 86 (854)
Q Consensus 13 ~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~------~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~ 86 (854)
+++|+|||+.+++ .+++|||+.++.. |+. +-..|. .|.|+.|.|.|..-.. +-..+.+.||.+|+.
T Consensus 1 ~~~i~idg~~~~~---~~g~til~a~~~~-gi~-ip~~C~~~~~~~~G~C~~C~v~v~~g~~---~~~~~~~~aC~~~v~ 72 (847)
T PRK08166 1 MATIHVDGKEYEV---NGADNLLEACLSL-GID-IPYFCWHPALGSVGACRQCAVKQYQNPE---DTRGRLVMSCMTPAT 72 (847)
T ss_pred CeEEEECCEEEEe---CCCCHHHHHHHHc-CCC-CCccccCCCCCCCCccCCCeEEEeecCc---cCCCCcccCcCCCCC
Confidence 4789999999776 4799999999864 432 345898 5999999999942110 112457889999876
Q ss_pred hccCceeEEecCCCCCCCCcchHhHHHHhcCCCCCCCCChHH
Q 003040 87 SVNGCLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGM 128 (854)
Q Consensus 87 ~~~g~~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~ 128 (854)
+|..|.|-.--- ...-.-+.+.|...|-..|..|.-|-
T Consensus 73 --~gm~v~t~~~~~--~~~r~~~~e~ll~~hp~dc~~c~~~g 110 (847)
T PRK08166 73 --DGTFISIDDPEA--KAFRASVVEWLMTNHPHDCPVCEEGG 110 (847)
T ss_pred --CCCEEEeCCHHH--HHHHHHHHHHHHhcCCCCCCccCCCC
Confidence 499998732110 11123467777889999999998663
No 79
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=95.18 E-value=0.054 Score=58.69 Aligned_cols=98 Identities=21% Similarity=0.317 Sum_probs=67.3
Q ss_pred ceeEEEEEECCEEEEEecCCCCCcHHHHHhhccCCccccc----CC-CCCCCCccEEEEeecCCCcccCCceeecccccc
Q 003040 10 TRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKL----GC-GEGGCGACVVLLSKYNPELDQLEDFTISSCLTL 84 (854)
Q Consensus 10 ~~~~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~----gC-~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~ 84 (854)
-+-.+.++|||+.+++. .+++|||+..|+. |+.=... +. ..|.|.-|.|-|. + ..+.+.||.+|
T Consensus 65 ~~~~~~I~IDGk~VeV~--~~G~TILeAAr~~-GI~IPtLCy~~~L~p~G~CRlClVEVe------G--~~~lv~AC~tp 133 (297)
T PTZ00305 65 HKPRAIMFVNKRPVEII--PQEENLLEVLERE-GIRVPKFCYHPILSVAGNCRMCLVQVD------G--TQNLVVSCATV 133 (297)
T ss_pred cCCceEEEECCEEEEec--CCCChHHHHHHHc-CCCcCccccCCCCCCCCccceeEEEEC------C--CcCcccccCCc
Confidence 34568899999999872 5799999999864 4432221 22 3789999999993 1 24578999999
Q ss_pred hhhccCceeEEecCCCCCCCCcch----HhHHHHhcCCCCCCCCCh
Q 003040 85 LCSVNGCLITTSEGLGNSKTGFHP----IHQRFAGFHASQCGFCTP 126 (854)
Q Consensus 85 ~~~~~g~~i~TvEgl~~~~~~~h~----iq~a~~~~~~~qCG~CtP 126 (854)
+. +|..|.| . ...+.. +-+.|...|-.-|..|.-
T Consensus 134 V~--eGM~V~T----~--Se~v~~~Rk~vLElLLs~Hp~DC~~C~k 171 (297)
T PTZ00305 134 AL--PGMSIIT----D--SRLVRDAREGNVELILINHPNDCPICEQ 171 (297)
T ss_pred CC--CCCEEEe----C--CHHHHHHHHHHHHHHHhcCCCcCCcccC
Confidence 76 6999998 1 223333 334455666666766664
No 80
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=95.02 E-value=0.077 Score=51.97 Aligned_cols=85 Identities=20% Similarity=0.259 Sum_probs=57.1
Q ss_pred eEEEEEE-CCEEEEEecCCCCCcHHHHHhhccCCcccccCCC-CCCCCccEEEEeec-----CC---------Ccc-cCC
Q 003040 12 HSVVFAV-NGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCG-EGGCGACVVLLSKY-----NP---------ELD-QLE 74 (854)
Q Consensus 12 ~~i~f~~-Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~-~G~CGaCtV~v~~~-----~~---------~~~-~~~ 74 (854)
.+|+|+= ||+.++++ +.++.+|++.|++. +.-+.-.-|+ .|.||-|.|.|..- .+ ... ...
T Consensus 36 v~I~~~~~dG~~~~v~-~~~G~sLLeal~~~-~~i~i~~~CGG~g~CgtC~V~V~~g~~~~l~~~~~~E~~~L~~~~~~~ 113 (143)
T PTZ00490 36 VKVCVKKRDGTHCDVE-VPVGMSLMHALRDV-AKLDVEGTCNGCMQCATCHVYLSAASFKKLGGPSEEEEDVLAKALDVK 113 (143)
T ss_pred EEEEEEcCCCCEEEEE-ECCCccHHHHHHHc-CCCCccccCCCCCEeCCCEEEECCCccccCCCCChHHHHHhhccccCC
Confidence 3444442 47888887 79999999999985 3345555688 99999999999551 00 000 223
Q ss_pred ceeecccccchhh-ccCceeEEecC
Q 003040 75 DFTISSCLTLLCS-VNGCLITTSEG 98 (854)
Q Consensus 75 ~~~v~sCl~~~~~-~~g~~i~TvEg 98 (854)
.....||.+.+.. ++|-.|..-|-
T Consensus 114 ~gsRLaCQi~v~~~ldgl~V~vp~~ 138 (143)
T PTZ00490 114 ETSRLACQVDLTPEMDGLEVELPSY 138 (143)
T ss_pred CCcEEeeeEEEecCCCCEEEEeCcc
Confidence 3455899988864 67877775443
No 81
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=94.98 E-value=0.06 Score=62.60 Aligned_cols=157 Identities=20% Similarity=0.263 Sum_probs=90.1
Q ss_pred ceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeccccCceeeeCCCcccccceEecCCcEEecccccHHHHHH
Q 003040 241 GSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIE 320 (854)
Q Consensus 241 ~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~ 320 (854)
..+++|+|.+|+.++++.... .+...++++||++..-.- .....+||++++..+..|..+.+.++++|++++.+|.+
T Consensus 16 ~~v~~P~s~eev~~iv~~A~~-~~~~v~v~G~GhS~s~~~--~~~gvvIdl~~l~~i~~id~~~~~vtV~aG~~l~~L~~ 92 (438)
T TIGR01678 16 EVYYQPTSVEEVREVLALARE-QKKKVKVVGGGHSPSDIA--CTDGFLIHLDKMNKVLQFDKEKKQITVEAGIRLYQLHE 92 (438)
T ss_pred CEEEecCCHHHHHHHHHHHHH-CCCeEEEECCCCCCCCCc--cCCeEEEEhhhcCCceEEcCCCCEEEEcCCCCHHHHHH
Confidence 468999999999998874321 134578889997653210 12358999988655544555567899999999999998
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchH-HHHHhcCcEEEEEeCCee-EEEeh
Q 003040 321 ALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVA-TVLLGAGAMVNIMTGQKC-EKLML 398 (854)
Q Consensus 321 ~l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp~~~~sD~~-~~LlAldA~v~l~s~~g~-R~vpl 398 (854)
.+.+. .+ . +...++ =+..||||.|+++.-. +... ..+...=-.+++...+|+ .+++-
T Consensus 93 ~L~~~----------Gl---~--l~~~g~---~~~~TvGG~iatg~hG---~~~~~G~~~d~V~~l~vV~~~G~i~~~s~ 151 (438)
T TIGR01678 93 QLDEH----------GY---S--MSNLGS---ISEVSVAGIISTGTHG---SSIKHGILATQVVALTIMTADGEVLECSE 151 (438)
T ss_pred HHHHc----------CC---E--ecCCCC---CCCceeeehhcCCCCC---CccccCcHHhhEEEEEEEcCCCcEEEeCC
Confidence 87542 00 0 111222 1458999988766542 1110 011111123445555563 33332
Q ss_pred ---hhhhc--CCCCCCCceEEEEEcCCC
Q 003040 399 ---EEFLE--RPPLDSRSILLSVEIPCW 421 (854)
Q Consensus 399 ---~dF~~--~~~L~~~Eii~~I~iP~~ 421 (854)
.|.|. ...+..--||+++.|...
T Consensus 152 ~~~~dlf~a~~~~~G~lGIIt~vtl~l~ 179 (438)
T TIGR01678 152 ERNADVFQAARVSLGCLGIIVTVTIQVV 179 (438)
T ss_pred CCChhHHHHHhcCCCceEeeEEEEEEEE
Confidence 23443 122333457787777543
No 82
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=94.96 E-value=0.17 Score=60.44 Aligned_cols=83 Identities=10% Similarity=0.112 Sum_probs=55.5
Q ss_pred ceEEecCCHHHHHHHHhhhcCCCCCcceEEcc-CccceEe-eccccC-ceeeeCCCcccccceEecCCcEEecccccHHH
Q 003040 241 GSWHSPISVQELRNVLESVEGSNQISSKLVAG-NTGMGYY-KEVEHY-DKYIDIRYIPELSVIRRDQTGIEIGATVTISK 317 (854)
Q Consensus 241 ~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaG-gT~l~~~-k~~~~~-~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~ 317 (854)
..+++|+|.+|+.++++.... .+...++++| |.++.-. ...... ..+||++++..+-.|..+...++++|++++.+
T Consensus 33 ~~vv~P~s~eeV~~iV~~A~~-~g~~v~v~GG~gHs~~~~a~t~~~~ggvvIdL~~Ln~il~iD~~~~tVtV~AG~~l~~ 111 (557)
T TIGR01677 33 ANVAYPKTEAELVSVVAAATA-AGRKMKVVTRYSHSIPKLACPDGSDGALLISTKRLNHVVAVDATAMTVTVESGMSLRE 111 (557)
T ss_pred CEEEecCCHHHHHHHHHHHHH-CCCeEEEEeCCCCCcCcccccCCCCCEEEEEcccCCCCEEEeCCCCEEEECCCCcHHH
Confidence 457899999999999885321 1234566654 3333211 110112 38999998665555566667899999999999
Q ss_pred HHHHHHH
Q 003040 318 AIEALKE 324 (854)
Q Consensus 318 l~~~l~~ 324 (854)
|.+.+.+
T Consensus 112 L~~~L~~ 118 (557)
T TIGR01677 112 LIVEAEK 118 (557)
T ss_pred HHHHHHH
Confidence 9998764
No 83
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=94.94 E-value=0.052 Score=61.12 Aligned_cols=53 Identities=23% Similarity=0.418 Sum_probs=44.1
Q ss_pred ceeEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEe
Q 003040 10 TRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLS 64 (854)
Q Consensus 10 ~~~~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~ 64 (854)
....|+|...|+.+++..+++++|||+.+.+. |+ -+..+|+.|.||+|.|-+-
T Consensus 261 ~~~~v~~~~~~~~~~~~~~~~~~slL~~~~~~-gi-~~~~~C~~G~Cg~C~~~~~ 313 (352)
T TIGR02160 261 DVSKVTVTLDGRSTETSSLSRDESVLDAALRA-RP-DLPFACKGGVCGTCRAKVL 313 (352)
T ss_pred CceEEEEEECCceEEEEecCCCCcHHHHHHHc-CC-CCcCCCCCccCCCCEEEEe
Confidence 44578999999988643378999999999764 75 6888999999999999983
No 84
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=94.93 E-value=0.18 Score=55.89 Aligned_cols=105 Identities=13% Similarity=0.152 Sum_probs=71.6
Q ss_pred CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeccccCceeeeCCCcccccceEecCCcEEecccccHHHHH
Q 003040 240 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAI 319 (854)
Q Consensus 240 ~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~ 319 (854)
...++.|.|.+|+.++++-... ..-...++.|||.+.+... .....+|++++ |+.|+.+++.+++||++++.+|.
T Consensus 37 a~~vv~p~~~edv~~~l~~a~~-~~ip~~v~GgGSNll~~d~-g~~GvvI~l~~---l~~i~~~~~~v~v~aG~~~~~L~ 111 (305)
T PRK12436 37 ADVFVAPTNYDEIQEVIKYANK-YNIPVTFLGNGSNVIIKDG-GIRGITVSLIH---ITGVTVTGTTIVAQCGAAIIDVS 111 (305)
T ss_pred EEEEEecCCHHHHHHHHHHHHH-cCCCEEEEcCCeEEEEeCC-CeeEEEEEeCC---cCcEEEeCCEEEEEeCCcHHHHH
Confidence 4568899999999988862211 2346788999999875332 23468899875 55677778899999999999998
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccC
Q 003040 320 EALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQR 367 (854)
Q Consensus 320 ~~l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp 367 (854)
+.+.+. .+- -+...++ --|||||++.+...
T Consensus 112 ~~~~~~----------gl~----Gle~~~g----iPGtVGGav~~NAG 141 (305)
T PRK12436 112 RIALDH----------NLT----GLEFACG----IPGSVGGALYMNAG 141 (305)
T ss_pred HHHHHc----------CCc----cchhhcC----CccchhHHHHhcCc
Confidence 876542 011 1111111 24799999987655
No 85
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=94.64 E-value=0.053 Score=64.75 Aligned_cols=107 Identities=14% Similarity=0.120 Sum_probs=72.5
Q ss_pred ceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeccccCceeeeCCCcccccceEecCCcEEecccccHHHHHH
Q 003040 241 GSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIE 320 (854)
Q Consensus 241 ~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~ 320 (854)
...++|+|.+|+.++++-... ..-...+.+|||++.=..-......+||++++..+..+..++..++++|++++.+|.+
T Consensus 135 ~~Vv~P~s~eeV~~ivk~a~~-~~ipv~prGgGts~~G~~~~~~ggivIdl~~mn~I~~id~~~~~vtVeaGv~~~~L~~ 213 (555)
T PLN02805 135 DVVVFPRSEEEVSKIVKSCNK-YKVPIVPYGGATSIEGHTLAPHGGVCIDMSLMKSVKALHVEDMDVVVEPGIGWLELNE 213 (555)
T ss_pred CEEEEcCCHHHHHHHHHHHHH-CCCcEEEECCCCCCCCCccCCCCEEEEEccCCCCeEEEeCCCCEEEEeCCcCHHHHHH
Confidence 357889999999988773211 1335678899998841100012358999988766666667788999999999999999
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccC
Q 003040 321 ALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQR 367 (854)
Q Consensus 321 ~l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp 367 (854)
.+.++ ...+|.. +. ..+||||+|++..-
T Consensus 214 ~L~~~--------Gl~~p~~---------p~--~~~TIGG~ia~n~~ 241 (555)
T PLN02805 214 YLEPY--------GLFFPLD---------PG--PGATIGGMCATRCS 241 (555)
T ss_pred HHHHc--------CCEeCCC---------Cc--cccChhhHhhCCCc
Confidence 87653 1112211 11 34799999987743
No 86
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=94.43 E-value=0.082 Score=61.17 Aligned_cols=155 Identities=14% Similarity=0.132 Sum_probs=91.9
Q ss_pred ceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeccccCceeeeCCCcccccceEecCCcEEecccccHHHHHH
Q 003040 241 GSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIE 320 (854)
Q Consensus 241 ~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~ 320 (854)
..+++|+|.+|+.++++.. ....++++||++..-.- .....+||++++..+-.+..+.+.++++|++++.+|.+
T Consensus 13 ~~v~~P~s~~ev~~~v~~a----~~~v~~~G~Ghs~~~~~--~~~g~~idl~~l~~i~~~d~~~~~v~v~aG~~l~~l~~ 86 (419)
T TIGR01679 13 SAIVRPTDEGELADVIAQA----AKPVRAVGSGHSFTDLA--CTDGTMISLTGLQGVVDVDQPTGLATVEAGTRLGALGP 86 (419)
T ss_pred CeEECCCCHHHHHHHHHHh----CCCEEEEeCCCCCCCcc--cCCCEEEEhhHcCCceeecCCCCEEEEcCCCCHHHHHH
Confidence 4678999999999998853 23588888887764321 12358999988554444455578999999999999998
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCch-HHHHHhcCcEEEEEeCCee-EEEeh
Q 003040 321 ALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDV-ATVLLGAGAMVNIMTGQKC-EKLML 398 (854)
Q Consensus 321 ~l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp~~~~sD~-~~~LlAldA~v~l~s~~g~-R~vpl 398 (854)
.+.+. ...+| ..++ + +..||||.|++..-. +.. ...+...=-.++|...+|+ +++.-
T Consensus 87 ~L~~~--------G~~l~-------~~~~--~-~~~tvGG~ia~~~hG---~g~~~G~~~d~V~~l~vV~a~G~v~~~~~ 145 (419)
T TIGR01679 87 QLAQR--------GLGLE-------NQGD--I-DPQSIGGALGTATHG---TGVRFQALHARIVSLRLVTAGGKVLDLSE 145 (419)
T ss_pred HHHHc--------CCccc-------cCCC--C-CCceeccceecCCCC---CCccCCchhhhEEEEEEEcCCCCEEEEcC
Confidence 87643 01111 1122 2 347999999875432 110 0011111123445556663 33332
Q ss_pred ---hhhhc--CCCCCCCceEEEEEcCCCC
Q 003040 399 ---EEFLE--RPPLDSRSILLSVEIPCWD 422 (854)
Q Consensus 399 ---~dF~~--~~~L~~~Eii~~I~iP~~~ 422 (854)
.|.|. ...+..=-|||++.+...+
T Consensus 146 ~~~~dLf~a~~g~~G~lGVIt~vtl~~~p 174 (419)
T TIGR01679 146 GDDQDMYLAARVSLGALGVISQVTLQTVA 174 (419)
T ss_pred CCCHHHHHHHHhCCCceEEEEEEEEEeec
Confidence 24443 2223334588888886543
No 87
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=94.09 E-value=0.34 Score=54.22 Aligned_cols=137 Identities=13% Similarity=0.128 Sum_probs=82.5
Q ss_pred ceeecC-CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeccccCceeeeCCCcccccceEe---cCC--cE
Q 003040 234 AMLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRR---DQT--GI 307 (854)
Q Consensus 234 ~~~~~~-~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~---~~~--~l 307 (854)
++.+.+ ...|+.|.|.+|+.++++-... ..-...+|.||+-+.+-. ..+..+|-+ ++ +.++. +++ .|
T Consensus 14 t~riGG~A~~~~~p~~~~el~~~~~~~~~-~~~p~~vlG~GSNlLv~D--~~~g~vI~~-~~---~~~~~~~~~~~~~~v 86 (334)
T PRK00046 14 TFGIDARARHLVEAESEEQLLEALADARA-AGLPVLVLGGGSNVLFTE--DFDGTVLLN-RI---KGIEVLSEDDDAWYL 86 (334)
T ss_pred eeccCcEEeEEEeeCCHHHHHHHHHHHHH-cCCCEEEEeceEEEEECC--CCCEEEEEe-cC---CceEEEecCCCeEEE
Confidence 455666 6678899999999998874311 134578889999887743 355667765 33 44443 333 69
Q ss_pred EecccccHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEE
Q 003040 308 EIGATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNI 387 (854)
Q Consensus 308 ~IGA~vTl~~l~~~l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp~~~~sD~~~~LlAldA~v~l 387 (854)
++||++.+.+|.....+. .+.. ++++++.+ |||||-+.+...+ |-.++.=++ -+|++
T Consensus 87 ~a~AG~~~~~l~~~~~~~----------gl~G----lE~l~gIP----GTVGGAv~mNaGa-yG~ei~d~l----~~V~v 143 (334)
T PRK00046 87 HVGAGENWHDLVLWTLQQ----------GMPG----LENLALIP----GTVGAAPIQNIGA-YGVELKDVC----DYVEA 143 (334)
T ss_pred EEEcCCcHHHHHHHHHHc----------Cchh----hHHhcCCC----cchhHHHHhcCCc-CcccHheeE----EEEEE
Confidence 999999999999875432 1111 23334333 6777776655442 111221111 14555
Q ss_pred EeCC-e-eEEEehhh
Q 003040 388 MTGQ-K-CEKLMLEE 400 (854)
Q Consensus 388 ~s~~-g-~R~vpl~d 400 (854)
...+ | .++++-+|
T Consensus 144 ~d~~~g~~~~~~~~e 158 (334)
T PRK00046 144 LDLATGEFVRLSAAE 158 (334)
T ss_pred EECCCCcEEEEEHHH
Confidence 5543 4 56777777
No 88
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=94.08 E-value=0.23 Score=56.14 Aligned_cols=85 Identities=8% Similarity=0.062 Sum_probs=61.3
Q ss_pred ceeecC-CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeccccCceeeeCCCcccccceEec--CCcEEec
Q 003040 234 AMLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRD--QTGIEIG 310 (854)
Q Consensus 234 ~~~~~~-~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~--~~~l~IG 310 (854)
++.+.+ ...|+.|.|.+|+.++++.... ..-...++.||+.+.+-.. ..+..+|+++. +.|+.+ ++.|++|
T Consensus 26 t~~iGg~A~~~~~p~s~edl~~~l~~a~~-~~~p~~vlGgGSNlLv~D~-g~~GvVI~l~~----~~i~i~~~~~~v~vg 99 (363)
T PRK13903 26 TLRVGGPARRLVTCTSTEELVAAVRELDA-AGEPLLVLGGGSNLVIADD-GFDGTVVRVAT----RGVTVDCGGGLVRAE 99 (363)
T ss_pred EeecCccceEEEEeCCHHHHHHHHHHHHH-CCCCEEEEeCCeeEeECCC-CccEEEEEeCC----CcEEEeCCCCEEEEE
Confidence 455666 5678899999999998863211 2346889999999865332 34578898863 455554 6789999
Q ss_pred ccccHHHHHHHHHH
Q 003040 311 ATVTISKAIEALKE 324 (854)
Q Consensus 311 A~vTl~~l~~~l~~ 324 (854)
|++++.++.....+
T Consensus 100 AG~~~~~l~~~a~~ 113 (363)
T PRK13903 100 AGAVWDDVVARTVE 113 (363)
T ss_pred cCCCHHHHHHHHHH
Confidence 99999999887543
No 89
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=93.91 E-value=0.065 Score=60.03 Aligned_cols=47 Identities=28% Similarity=0.643 Sum_probs=38.2
Q ss_pred eEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEE
Q 003040 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLL 63 (854)
Q Consensus 12 ~~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v 63 (854)
..|+|.-+|+.+++ .+++|||+.|++. |+. ...+|+.|.||.|.|-+
T Consensus 3 ~~v~~~~~~~~~~~---~~g~tlL~a~~~~-gi~-~~~~C~~G~Cg~C~~~~ 49 (339)
T PRK07609 3 FQVTLQPSGRQFTA---EPDETILDAALRQ-GIH-LPYGCKNGACGSCKGRL 49 (339)
T ss_pred EEEEEecCCeEEEe---CCCCcHHHHHHHc-CCC-CCCCCCCeECCCCEEEE
Confidence 35777777766554 5799999999875 754 78999999999999987
No 90
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=93.81 E-value=0.081 Score=59.18 Aligned_cols=47 Identities=30% Similarity=0.451 Sum_probs=35.8
Q ss_pred EEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEE
Q 003040 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLL 63 (854)
Q Consensus 14 i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v 63 (854)
+++.+++...++. ++++.|||+.|++. |+ -+..+|+.|.||.|.|-+
T Consensus 249 ~~v~~~~~~~~~~-~~~~~~lL~~~~~~-gi-~~~~~C~~G~Cg~C~~~~ 295 (332)
T PRK10684 249 LTFTKLQPAREFY-APVGTTLLEALESN-KV-PVVAACRAGVCGCCKTKV 295 (332)
T ss_pred eEEEEecCCEEEE-eCCCChHHHHHHHc-CC-CccCCCCCcCCCCCEEEE
Confidence 4444444334444 56899999999864 75 788999999999999998
No 91
>COG0633 Fdx Ferredoxin [Energy production and conversion]
Probab=93.76 E-value=0.1 Score=48.21 Aligned_cols=48 Identities=27% Similarity=0.529 Sum_probs=36.8
Q ss_pred EEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEe
Q 003040 15 VFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLS 64 (854)
Q Consensus 15 ~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~ 64 (854)
....+|+......++.+.+||+.+.++ |+. .-.+|+.|.||+|.|.|.
T Consensus 6 ~v~~~~~~~~~~~~~~g~tiLe~a~~~-gi~-i~~~C~~g~C~TC~v~v~ 53 (102)
T COG0633 6 FVTIDGEGDVTEAVNEGETLLEAAERN-GIP-IEYACRGGACGTCRVKVL 53 (102)
T ss_pred EEeccCCcceEEeccCCcHHHHHHHHC-CCc-ceecCCCCccCccEEEEe
Confidence 344455445555456699999999865 666 779999999999999994
No 92
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=93.67 E-value=0.32 Score=53.66 Aligned_cols=87 Identities=10% Similarity=0.045 Sum_probs=60.8
Q ss_pred ceeecC-CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeccccCceeeeCCCcccccceEecCC--cEEec
Q 003040 234 AMLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQT--GIEIG 310 (854)
Q Consensus 234 ~~~~~~-~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~--~l~IG 310 (854)
++.+.+ ...|+.|+|.+|+.++++-... +.-...++.||+-+.+... .....+|+++.- .+ .+..+++ .+++|
T Consensus 14 t~~iGg~a~~~v~p~~~~dl~~~l~~~~~-~~ip~~vlG~GSNlL~~d~-g~~GvVI~l~~~-~~-~i~~~~~~~~v~v~ 89 (295)
T PRK14649 14 SWRIGGPARYFVEPTTPDEAIAAAAWAEQ-RQLPLFWLGGGSNLLVRDE-GFDGLVARYRGQ-RW-ELHEHGDTAEVWVE 89 (295)
T ss_pred EeeeCceeeEEEEcCCHHHHHHHHHHHHH-CCCCEEEEecceeEEEeCC-CcCeEEEEecCC-Cc-EEEEeCCcEEEEEE
Confidence 455666 5678889999999988763211 2346788899998866433 345688888642 23 4444444 79999
Q ss_pred ccccHHHHHHHHHH
Q 003040 311 ATVTISKAIEALKE 324 (854)
Q Consensus 311 A~vTl~~l~~~l~~ 324 (854)
|++++.++...+.+
T Consensus 90 AG~~~~~l~~~~~~ 103 (295)
T PRK14649 90 AGAPMAGTARRLAA 103 (295)
T ss_pred cCCcHHHHHHHHHH
Confidence 99999999987543
No 93
>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.
Probab=93.28 E-value=0.13 Score=48.25 Aligned_cols=42 Identities=19% Similarity=0.514 Sum_probs=32.8
Q ss_pred CCEEEEEecCCCCCcHHHHHhhccCCcccccCCC-CCCCCccEEEEee
Q 003040 19 NGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCG-EGGCGACVVLLSK 65 (854)
Q Consensus 19 Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~-~G~CGaCtV~v~~ 65 (854)
+|+.++ +.++++||+.|++. |+. +-..|+ .|.||.|.|.|..
T Consensus 14 ~~~~~~---~~~g~tLL~a~~~~-gi~-i~~~CgG~G~CgtC~v~V~~ 56 (110)
T TIGR02007 14 EGAVVE---AKPGETILDVALDN-GIE-IEHACEKSCACTTCHCIVRE 56 (110)
T ss_pred CCeEEE---ECCCChHHHHHHHc-CCC-ccccCCCCceeCCCEEEEee
Confidence 455544 46899999999875 665 777998 7999999998843
No 94
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=93.09 E-value=0.11 Score=59.75 Aligned_cols=49 Identities=27% Similarity=0.547 Sum_probs=39.1
Q ss_pred eEEEEEECC-EEEEEecCCCCCcHHHHHhhccCCcccccCCCC-CCCCccEEEE
Q 003040 12 HSVVFAVNG-EKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGE-GGCGACVVLL 63 (854)
Q Consensus 12 ~~i~f~~Ng-~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~-G~CGaCtV~v 63 (854)
..|++++|| +..+++ +.+++|||+.++.. |+. ....|+. |.||.|.|.+
T Consensus 30 ~~v~v~~~~~~~~~~~-~~~g~tlL~a~~~~-gi~-i~~~C~g~G~Cg~C~v~v 80 (405)
T TIGR01941 30 GDITIGINDDEEKSIT-VPAGGKLLNTLASN-GIF-ISSACGGGGTCGQCRVRV 80 (405)
T ss_pred ccEEEEEcCCCceEEE-ECCCChHHHHHHHc-CCC-CcccCCCccEeCCCEEEE
Confidence 458999985 445555 67899999999875 664 6778995 8999999998
No 95
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=92.71 E-value=0.13 Score=59.23 Aligned_cols=50 Identities=28% Similarity=0.556 Sum_probs=40.0
Q ss_pred eeEEEEEECCE-EEEEecCCCCCcHHHHHhhccCCcccccCCCC-CCCCccEEEE
Q 003040 11 RHSVVFAVNGE-KFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGE-GGCGACVVLL 63 (854)
Q Consensus 11 ~~~i~f~~Ng~-~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~-G~CGaCtV~v 63 (854)
+.++++++||. ..+++ +.+++|||+.++.. |+. ...+|+. |.||.|.|.+
T Consensus 33 ~~~~~i~~~~~~~~~~~-~~~g~tLL~a~~~~-gi~-i~~~C~g~G~CgtC~v~v 84 (409)
T PRK05464 33 SGDVTIKINGDPEKTIT-VPAGGKLLGALASN-GIF-LSSACGGGGSCGQCRVKV 84 (409)
T ss_pred CccEEEEEcCCCcEEEE-ECCCchHHHHHHHc-CCC-cccCCCCccEeCCCEEEE
Confidence 45788899983 45555 67899999999865 764 6678995 9999999988
No 96
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=92.32 E-value=0.94 Score=49.30 Aligned_cols=153 Identities=14% Similarity=0.138 Sum_probs=92.8
Q ss_pred ceeecCCceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeccccCceeeeCCCcccccceEecCCcEEecccc
Q 003040 234 AMLLDVKGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATV 313 (854)
Q Consensus 234 ~~~~~~~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~v 313 (854)
++.+.+.-+|+.|.|.+|+.++++ -...++.||+-+.+-.. ..+..+|-+++ .+..++.++ ++||++
T Consensus 14 t~riGG~A~~~~p~~~~~l~~~~~-------~p~~vlG~GSNlL~~D~-g~~g~vI~l~~--~~~~~~~~~---~a~AG~ 80 (273)
T PRK14651 14 TLGVGGPAELWTVETHEQLAEATE-------APYRVLGGGSNLLVSDA-GVPERVIRLGG--EFAEWDLDG---WVGGGV 80 (273)
T ss_pred EeecCceEEEEecCCHHHHHHHHC-------CCeEEEeceeEEEEcCC-CcceEEEEECC--cceeEeECC---EEECCC
Confidence 455666334444999999999885 46788899888866433 34466777654 245555443 799999
Q ss_pred cHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCee
Q 003040 314 TISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKC 393 (854)
Q Consensus 314 Tl~~l~~~l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp~~~~sD~~~~LlAldA~v~l~s~~g~ 393 (854)
.+.+|.....+. .+. -+++.++.+ |||||-+++...+ |-.++.-.+. .|++......
T Consensus 81 ~~~~l~~~~~~~----------gl~----GlE~l~gIP----GTVGGAv~mNaGa-yG~ei~d~l~----~V~~~~~g~~ 137 (273)
T PRK14651 81 PLPGLVRRAARL----------GLS----GLEGLVGIP----AQVGGAVKMNAGT-RFGEMADALH----TVEIVHDGGF 137 (273)
T ss_pred cHHHHHHHHHHC----------CCc----chhhhcCCC----cchhhHHHhhCCc-cccChheeEE----EEEEEECCCE
Confidence 999998875432 011 123333332 7888887665442 1233333333 2333333346
Q ss_pred EEEehhh-hhc--CCCCCCCceEEEEEcCCCC
Q 003040 394 EKLMLEE-FLE--RPPLDSRSILLSVEIPCWD 422 (854)
Q Consensus 394 R~vpl~d-F~~--~~~L~~~Eii~~I~iP~~~ 422 (854)
++++-+| .|. ...++.+.||+++.+....
T Consensus 138 ~~~~~~e~~f~YR~S~~~~~~iIl~a~f~l~~ 169 (273)
T PRK14651 138 HQYSPDELGFGYRHSGLPPGHVVTRVRLKLRP 169 (273)
T ss_pred EEEEHHHccccccccCCCCCEEEEEEEEEECC
Confidence 7888888 333 3445555688888776654
No 97
>PRK05713 hypothetical protein; Provisional
Probab=92.04 E-value=0.22 Score=55.30 Aligned_cols=44 Identities=27% Similarity=0.538 Sum_probs=36.0
Q ss_pred EEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEE
Q 003040 15 VFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLL 63 (854)
Q Consensus 15 ~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v 63 (854)
+|+.||+.+++ .+++|||+.+++. |+ -...+|+.|.||.|.|.+
T Consensus 3 ~~~~~~~~~~~---~~g~tlL~a~~~~-gi-~~~~~C~~G~Cg~C~~~~ 46 (312)
T PRK05713 3 ELRVGERRWSV---PAGSNLLDALNAA-GV-AVPYSCRAGSCHACLVRC 46 (312)
T ss_pred cEecCCeEEEE---CCCCcHHHHHHHc-CC-CCCcCCCCcCCCCCeEEE
Confidence 57889987665 5799999999864 54 345689999999999998
No 98
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=91.76 E-value=1.9 Score=47.20 Aligned_cols=158 Identities=20% Similarity=0.233 Sum_probs=92.0
Q ss_pred eeecC-CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeccccCceeeeCCCcccccceEe--cCCcEEecc
Q 003040 235 MLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRR--DQTGIEIGA 311 (854)
Q Consensus 235 ~~~~~-~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~--~~~~l~IGA 311 (854)
..+.+ ...|+.|.+.+|+.++++.... ..-...++.||+-+.+..+ ....++|.+.. +..+.. .++.|++||
T Consensus 15 friGg~A~~~~~~~~~e~l~~~~~~~~~-~~~p~~ilG~GSNlLv~d~-g~~gvvi~~~~---~~~~~~~~~~~~i~a~a 89 (291)
T COG0812 15 FRIGGPAEVLVEPRDIEELKAALKYAKA-EDLPVLILGGGSNLLVRDG-GIGGVVIKLGK---LNFIEIEGDDGLIEAGA 89 (291)
T ss_pred EecCcceeEEEecCCHHHHHHHHHhhhh-cCCCEEEEecCceEEEecC-CCceEEEEccc---ccceeeeccCCeEEEcc
Confidence 44555 6789999999999998875421 1345778888888876544 23345555543 333433 344999999
Q ss_pred cccHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCC-CC-CCchHHHHHhcCcEEEEEe
Q 003040 312 TVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRK-HF-PSDVATVLLGAGAMVNIMT 389 (854)
Q Consensus 312 ~vTl~~l~~~l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp~-~~-~sD~~~~LlAldA~v~l~s 389 (854)
+..+.+|.....+. .+..|-- .++. =||+||-+.+.-.+ +. -+|.+ -+|++..
T Consensus 90 G~~~~~l~~~~~~~----------gl~GlE~----l~gI----PGsvGgav~mNaGAyG~Ei~d~~-------~~v~~ld 144 (291)
T COG0812 90 GAPWHDLVRFALEN----------GLSGLEF----LAGI----PGSVGGAVIMNAGAYGVEISDVL-------VSVEVLD 144 (291)
T ss_pred CCcHHHHHHHHHHc----------CCcchhh----hcCC----CcccchhhhccCcccccchheeE-------EEEEEEc
Confidence 99999998875432 1222211 1221 25666655443321 00 02221 1355555
Q ss_pred CCe-eEEEehhh-hhc--CCCCCCC-ceEEEEEcCCCC
Q 003040 390 GQK-CEKLMLEE-FLE--RPPLDSR-SILLSVEIPCWD 422 (854)
Q Consensus 390 ~~g-~R~vpl~d-F~~--~~~L~~~-Eii~~I~iP~~~ 422 (854)
.+| .++++.+| -|. ...++.. -+++++.+....
T Consensus 145 ~~G~~~~l~~~el~f~YR~S~f~~~~~vvl~v~f~L~~ 182 (291)
T COG0812 145 RDGEVRWLSAEELGFGYRTSPFKKEYLVVLSVEFKLTK 182 (291)
T ss_pred CCCCEEEEEHHHhCcccccCcCCCCCEEEEEEEEEeCC
Confidence 566 68899888 332 3334433 677777776654
No 99
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=90.98 E-value=0.26 Score=59.84 Aligned_cols=97 Identities=24% Similarity=0.395 Sum_probs=68.8
Q ss_pred EEEEEECCEEEEEecCCCCCcHHHHHhhccCCccc----ccCCC-CCCCCccEEEEeecCCCcccCCc--eeecccccch
Q 003040 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSV----KLGCG-EGGCGACVVLLSKYNPELDQLED--FTISSCLTLL 85 (854)
Q Consensus 13 ~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~----k~gC~-~G~CGaCtV~v~~~~~~~~~~~~--~~v~sCl~~~ 85 (854)
+++++|||+.++++ .+.|||+..|+- |+.=. -.+|+ -|-|.-|.|-+ ++ +++.||.+|+
T Consensus 1 m~tI~IDG~ei~v~---~g~tvLqAa~~a-Gi~IP~fCyh~~ls~~GaCRmClVEv----------eg~~k~~~SC~tpv 66 (693)
T COG1034 1 MVTITIDGKEIEVP---EGETVLQAAREA-GIDIPTFCYHPRLSIAGACRMCLVEV----------EGAPKLVASCATPV 66 (693)
T ss_pred CeEEEECCEEEecC---CCcHHHHHHHHc-CCCCCcccccCCCCcccceeEEEEEe----------cCCCcccccccccc
Confidence 47899999999875 588999999863 54322 22344 68888899988 34 8999999964
Q ss_pred hhccCceeEEecCCCCCCCCcchHhHHHHhcCCCCCCCCChH
Q 003040 86 CSVNGCLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPG 127 (854)
Q Consensus 86 ~~~~g~~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG 127 (854)
-+|..|-|==-.- +..-+-|-+.+..+|-.=|+-|.-|
T Consensus 67 --~dGM~I~T~s~~v--k~~R~~vmE~LLiNHPlDCpiCD~g 104 (693)
T COG1034 67 --TDGMVISTNSEEV--KKAREGVMEFLLINHPLDCPVCDKG 104 (693)
T ss_pred --CCCeEEecCCHHH--HHHHHHHHHHHHhcCCCCCCccCCC
Confidence 4788776510000 1123457778888999999999876
No 100
>PLN02441 cytokinin dehydrogenase
Probab=90.58 E-value=0.82 Score=54.26 Aligned_cols=82 Identities=12% Similarity=0.169 Sum_probs=56.4
Q ss_pred ceEEecCCHHHHHHHHhhhcC-CCCCcceEEccCccceEeeccccCceeeeCCCccc------ccceEecCCcEEecccc
Q 003040 241 GSWHSPISVQELRNVLESVEG-SNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPE------LSVIRRDQTGIEIGATV 313 (854)
Q Consensus 241 ~~~~~P~sl~eal~ll~~~~~-~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~E------L~~I~~~~~~l~IGA~v 313 (854)
...++|+|.+|+.++++.... ...-..++.+||+++.-... .....+||++++.. ...+..+...+++||++
T Consensus 66 ~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~-~~~GivIdms~Ln~i~~~~~ii~vd~~~~~VtV~aG~ 144 (525)
T PLN02441 66 AAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQ-APGGVVVDMRSLRGGVRGPPVIVVSGDGPYVDVSGGE 144 (525)
T ss_pred CEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCcc-CCCeEEEECCCCCCcCccCceEEEcCCCCEEEEcCCC
Confidence 467899999999999885421 01123567788888742111 12468999998765 23344456789999999
Q ss_pred cHHHHHHHHH
Q 003040 314 TISKAIEALK 323 (854)
Q Consensus 314 Tl~~l~~~l~ 323 (854)
++.++.+.+.
T Consensus 145 ~~~dv~~~l~ 154 (525)
T PLN02441 145 LWIDVLKATL 154 (525)
T ss_pred CHHHHHHHHH
Confidence 9999987654
No 101
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=90.56 E-value=0.63 Score=52.28 Aligned_cols=114 Identities=21% Similarity=0.320 Sum_probs=72.1
Q ss_pred ceeecC-CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeccccCceeeeCCCcccccceE-ecC-CcEEec
Q 003040 234 AMLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIR-RDQ-TGIEIG 310 (854)
Q Consensus 234 ~~~~~~-~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~-~~~-~~l~IG 310 (854)
.+.+.+ ...|+.|.|.+|+.++++.... ..-...+|.||+-+.+-.. ..+..+|.+.++.++.... .++ ..|++|
T Consensus 23 T~rIGG~A~~~~~p~s~~el~~~l~~~~~-~~~p~~iLG~GSNlL~~D~-g~~G~VI~l~~~~~i~i~~~~~~~~~v~ag 100 (354)
T PRK14648 23 SFRIGGAAQFWAEPRSCTQLRALIEEAQR-ARIPLSLIGGGSNVLIADE-GVPGLMLSLRRFRSLHTQTQRDGSVLVHAG 100 (354)
T ss_pred eeeeCcEEEEEEeeCCHHHHHHHHHHHHH-cCCCEEEEeceeEEEEeCC-CccEEEEEeCCcCceEEeeccCCcEEEEEE
Confidence 455666 6789999999999998874321 1235678888888866443 4557888875554442111 233 369999
Q ss_pred ccccHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccC
Q 003040 311 ATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQR 367 (854)
Q Consensus 311 A~vTl~~l~~~l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp 367 (854)
|++.+.+|.....+. .+- -++++++.+ |||||.+.+...
T Consensus 101 AG~~~~~Lv~~~~~~----------gl~----GlE~laGIP----GTVGGAv~mNAG 139 (354)
T PRK14648 101 AGLPVAALLAFCAHH----------ALR----GLETFAGLP----GSVGGAAYMNAR 139 (354)
T ss_pred eCCcHHHHHHHHHHc----------CCc----chhhhcCCC----cchhhHhhhcCC
Confidence 999999998875432 111 123333332 788888766544
No 102
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=89.63 E-value=0.56 Score=56.33 Aligned_cols=98 Identities=19% Similarity=0.334 Sum_probs=71.7
Q ss_pred eEEEEEECCEEEEEecCCCCCcHHHHHhhccCCc-----ccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchh
Q 003040 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFK-----SVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLC 86 (854)
Q Consensus 12 ~~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~-----g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~ 86 (854)
.+|+++|||+.+++. +++|+|+++.+. |+. -.+.-=.-|.|-.|.|-+ +|+-+.||.+++.
T Consensus 4 ~~i~vtidg~~~~v~---~G~tiL~a~~~~-gI~iP~iCy~~~l~pi~sCd~ClVEi----------dG~l~rsCsT~v~ 69 (978)
T COG3383 4 KMITVTIDGRSIEVE---EGTTILRAANRN-GIEIPHICYHESLGPIGSCDTCLVEI----------DGKLVRSCSTPVE 69 (978)
T ss_pred eeEEEEECCeEEecC---CChHHHHHHHhc-CCcccceeccCCCCcccccceEEEEe----------cCceecccccccc
Confidence 468999999998864 699999999754 443 333334568999999999 7999999999964
Q ss_pred hccCceeEEecCCCCCCCCcchHhHHHHhcCCCCCCCCChH
Q 003040 87 SVNGCLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPG 127 (854)
Q Consensus 87 ~~~g~~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG 127 (854)
+|..|.|-.-.-+ +.-..+-+++...|-.-|--|.-+
T Consensus 70 --dGm~v~t~s~rvk--~~r~~~md~~l~nH~LyC~vCd~n 106 (978)
T COG3383 70 --DGMVVRTNSERVK--EARREAMDRILSNHPLYCTVCDNN 106 (978)
T ss_pred --CCcEEecccHHHH--HHHHHHHHHHHhcCCcCccccCCC
Confidence 6899988543321 111234456778899989877766
No 103
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=89.33 E-value=0.91 Score=51.29 Aligned_cols=100 Identities=13% Similarity=0.122 Sum_probs=61.0
Q ss_pred HHHHHHHHhhhcCCCCCcceEEccCccceEeeccccCceeeeCCCcccccceEecCCcEEecccccHHHHHHHHHHHhhh
Q 003040 249 VQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEALKEETKE 328 (854)
Q Consensus 249 l~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~l~~~~~~ 328 (854)
++|+.++++.... .+-..++..|||.... .......+||++++.....+..++..++++|++++.+|.+.+.++-
T Consensus 4 ~~ev~~~v~~A~~-~~~~v~~~GgGt~~~~--g~~~~~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~~G-- 78 (352)
T PRK11282 4 SAALLERVRQAAA-DGTPLRIRGGGSKDFY--GRALAGEVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAEAG-- 78 (352)
T ss_pred HHHHHHHHHHHHH-CCCeEEEECCCCCCCC--CCCCCCeEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHHcC--
Confidence 3445444442111 2346788899985321 1111245899998766555666778999999999999999876431
Q ss_pred hhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccC
Q 003040 329 FHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQR 367 (854)
Q Consensus 329 ~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp 367 (854)
..+|. --+.....+||||+|++...
T Consensus 79 ------~~lp~--------~p~~~~~~~TIGG~iatg~~ 103 (352)
T PRK11282 79 ------QMLPF--------EPPHFGGGATLGGMVAAGLS 103 (352)
T ss_pred ------CeeCC--------CCCCcCCCcEehhHHhcCCC
Confidence 01110 01112335899999997754
No 104
>KOG2282 consensus NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit [Energy production and conversion]
Probab=84.84 E-value=1.6 Score=50.23 Aligned_cols=104 Identities=19% Similarity=0.357 Sum_probs=76.0
Q ss_pred CCCceeEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCC------CCCCCccEEEEeecCCCcccCCceeecc
Q 003040 7 HGGTRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCG------EGGCGACVVLLSKYNPELDQLEDFTISS 80 (854)
Q Consensus 7 ~~~~~~~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~------~G~CGaCtV~v~~~~~~~~~~~~~~v~s 80 (854)
|--+..+|..+|+|+.+.| +|++|+|+.-- ..|..=.+ -|- -|.|--|.|.|.+. -++|.|
T Consensus 26 ~~a~~~~ievfvd~~~v~v---~pg~tvlqac~-~~gv~ipr-fcyh~rlsvagncrmclveveks--------pkpva~ 92 (708)
T KOG2282|consen 26 TPASPNKIEVFVDDQSVMV---EPGTTVLQACA-KVGVDIPR-FCYHERLSVAGNCRMCLVEVEKS--------PKPVAA 92 (708)
T ss_pred ccCCccceEEEECCeeEee---CCCcHHHHHHH-HhCCCcch-hhhhhhhhhccceeEEEEEeccC--------CCcchh
Confidence 3334578999999988775 59999998763 23433222 243 48899999999543 578999
Q ss_pred cccchhhccCceeEEecCCCCCCCCcchHhHHHHhcCCCCCCCCChH
Q 003040 81 CLTLLCSVNGCLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPG 127 (854)
Q Consensus 81 Cl~~~~~~~g~~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG 127 (854)
|-||+ +.|+.|.|=-.+.+ ..-.-+-+-|.-+|-.-|.-|.-|
T Consensus 93 campv--m~g~~iktns~~~k--karegvmefll~nhpldcpicdqg 135 (708)
T KOG2282|consen 93 CAMPV--MKGWKIKTNSDKSK--KAREGVMEFLLMNHPLDCPICDQG 135 (708)
T ss_pred hcccc--cCCceeecCchHHH--HHHHHHHHHHHhCCCCCCCccCCC
Confidence 99996 67999999666643 122347778888999999999876
No 105
>PRK09970 xanthine dehydrogenase subunit XdhA; Provisional
Probab=76.69 E-value=3.8 Score=51.21 Aligned_cols=64 Identities=23% Similarity=0.265 Sum_probs=50.5
Q ss_pred CCCCCeEEEEECCCCcEEEEeCCC----Ch-HHHHHHHHHHhCCCCCCEEEEe-------CCcCCCCCCCCCCcHH
Q 003040 785 YMETQTALAVPDEDNCLVVYSSIQ----CP-ESAHATIARCLGIPEHNVRVIT-------RRVGGAFGGKAIKAMP 848 (854)
Q Consensus 785 ~mEp~~a~A~~~~dg~l~V~~stQ----~p-~~~~~~vA~~Lglp~~kV~V~~-------~~~GGgFGgK~~~~~~ 848 (854)
.++...+....+.||.++|++++. .. ..+.+.+|+.||+|.++|+|+. ++-+|.||++.+...-
T Consensus 457 ~~~~~~a~v~i~~dGsv~v~~g~~e~GQG~~T~~aQiaAe~LGi~~~~V~v~~~~dT~~~p~~~gt~aSr~t~~~g 532 (759)
T PRK09970 457 GLEIAGARLLMNQDGTVQVQSGATEIGQGSDTVFSQMVAETVGIPVSDVRVISTQDTDVTPFDPGAYASRQSYVAG 532 (759)
T ss_pred CCCcceEEEEEccCceEEEEECCCCcCCCHHHHHHHHHHHHhCCCHHhEEEEccCCCCCCCCCCCCchhhhHHHHH
Confidence 366788888888899999999984 33 3456888999999999999984 4567888888775533
No 106
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=76.00 E-value=4.9 Score=51.34 Aligned_cols=62 Identities=18% Similarity=0.185 Sum_probs=49.5
Q ss_pred CCCCeEEEEECCCCcEEEEeCCCCh-----HHHHHHHHHHhCCCCCCEEEEeC------CcCCCCCCCCCCcH
Q 003040 786 METQTALAVPDEDNCLVVYSSIQCP-----ESAHATIARCLGIPEHNVRVITR------RVGGAFGGKAIKAM 847 (854)
Q Consensus 786 mEp~~a~A~~~~dg~l~V~~stQ~p-----~~~~~~vA~~Lglp~~kV~V~~~------~~GGgFGgK~~~~~ 847 (854)
+++..+....+.||.++|+++++.. ..+.+.+|+.||+|.++|+|... .-+|.||++.+...
T Consensus 662 ~~~~~a~v~l~~dGsv~v~~g~~e~GqG~~T~~~QiaAe~LGip~d~V~v~~~DT~~~p~~~gt~aSr~t~~~ 734 (956)
T PRK09800 662 IDQANCMIKLESDGTFIVHSGGADIGTGLDTVVTKLAAEVLHCPPQDVHVISGDTDHALFDKGAYASSGTCFS 734 (956)
T ss_pred CCCceEEEEECCCceEEEEECCCCCCccHHHHHHHHHHHHHCCCceeEEEEeCCCCCCCCCCCcchhhhHHHH
Confidence 4566778888889999999998754 45678889999999999999964 45788888776543
No 107
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=73.94 E-value=4.3 Score=51.89 Aligned_cols=62 Identities=18% Similarity=0.175 Sum_probs=49.5
Q ss_pred CCCCeEEEEECCCCcEEEEeCCCCh-----HHHHHHHHHHhCCCCCCEEEEeC------CcCCCCCCCCCCcH
Q 003040 786 METQTALAVPDEDNCLVVYSSIQCP-----ESAHATIARCLGIPEHNVRVITR------RVGGAFGGKAIKAM 847 (854)
Q Consensus 786 mEp~~a~A~~~~dg~l~V~~stQ~p-----~~~~~~vA~~Lglp~~kV~V~~~------~~GGgFGgK~~~~~ 847 (854)
++...+....+.||.++|+++++.. ..+.+.+|+.||+|.++|+|+.. +-+|.||++.+...
T Consensus 658 ~~~~~a~v~l~~dG~v~v~~g~~e~GqG~~T~~~QiaAe~LGvp~d~V~v~~~DT~~~p~~~gt~aSr~t~~~ 730 (951)
T TIGR03313 658 IDQANCMIKLESDGTFIVHSGGADIGTGLDTVVSKLTAEVLHCPMDDVHVISGDTDHALFDKGAYASSGTCFS 730 (951)
T ss_pred CCCccEEEEEcCCceEEEEECCCCCCccHHHHHHHHHHHHHCCCHHhEEEEeCCCCCCCCCCCCcHHHHHHHH
Confidence 4567778888889999999999854 45778889999999999999964 44678888766543
No 108
>TIGR02965 xanthine_xdhB xanthine dehydrogenase, molybdopterin binding subunit. Members of the protein family are the molybdopterin-containing large subunit (or, in, eukaryotes, the molybdopterin-binding domain) of xanthine dehydrogenase, and enzyme that reduces the purine pool by catabolizing xanthine to urate. This model is based primarily on bacterial sequences; it does not manage to include all eukaryotic xanthine dehydrogenases and thereby discriminate them from the closely related enzyme aldehyde dehydrogenase.
Probab=72.18 E-value=4 Score=51.04 Aligned_cols=60 Identities=8% Similarity=0.037 Sum_probs=46.1
Q ss_pred CCCeEEEEECCCCcEEEEeCCCCh-----HHHHHHHHHHhCCCCCCEEEEe------CCcCCCCCCCCCCc
Q 003040 787 ETQTALAVPDEDNCLVVYSSIQCP-----ESAHATIARCLGIPEHNVRVIT------RRVGGAFGGKAIKA 846 (854)
Q Consensus 787 Ep~~a~A~~~~dg~l~V~~stQ~p-----~~~~~~vA~~Lglp~~kV~V~~------~~~GGgFGgK~~~~ 846 (854)
....+....++||+++|+++++.. ..+.+.+|+.||+|.++|+|.. +..+|.+|++.+..
T Consensus 446 ~~~~a~v~i~~dG~v~v~~g~~e~GQG~~T~laQIaAe~LGi~~d~V~v~~~DT~~~p~~~gT~gSr~t~~ 516 (758)
T TIGR02965 446 NQAGALVHVYTDGSIHLNHGGTEMGQGLNTKVAQVVAEEFQVDIDRVKITATDTDKVPNTSATAASSGSDL 516 (758)
T ss_pred CccceEEEEeCCCcEEEEECCCCCCCCHHHHHHHHHHHHhCCCHHHEEEEecCccCCCCCCCCchHHHHHH
Confidence 455677778888999999998653 3456788999999999999984 45567788776544
No 109
>TIGR02416 CO_dehy_Mo_lg carbon-monoxide dehydrogenase, large subunit. This model represents the large subunits of group of carbon-monoxide dehydrogenases that include molybdenum as part of the enzymatic cofactor. There are various forms of carbon-monoxide dehydrogenase; Salicibacter pomeroyi DSS-3, for example, has two forms. Note that, at least in some species, the active site Cys is modified with a selenium attached to (rather than replacing) the sulfur atom. This is termed selanylcysteine, and created post-translationally, in contrast to selenocysteine incorporation during translation as for many other selenoproteins.
Probab=70.66 E-value=4.7 Score=50.48 Aligned_cols=58 Identities=16% Similarity=0.198 Sum_probs=45.3
Q ss_pred CeEEEEECCCCcEEEEeCCCCh-----HHHHHHHHHHhCCCCCCEEEEeC------CcCCCCCCCCCCc
Q 003040 789 QTALAVPDEDNCLVVYSSIQCP-----ESAHATIARCLGIPEHNVRVITR------RVGGAFGGKAIKA 846 (854)
Q Consensus 789 ~~a~A~~~~dg~l~V~~stQ~p-----~~~~~~vA~~Lglp~~kV~V~~~------~~GGgFGgK~~~~ 846 (854)
..+.+..+.||.++|+++++.. ..+.+.+|+.||+|.++|+|... +-+|.||++.+..
T Consensus 476 ~~a~v~l~~dG~v~v~~g~~e~GQG~~T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~gt~~Sr~t~~ 544 (770)
T TIGR02416 476 DSCEIRIHPTGSAIARMGTKSQGQGHETTYAQIIATELGIPAEDIMVEEGDTDTAPYGLGTYGSRSTPV 544 (770)
T ss_pred ceEEEEECCCceEEEEECCCCCCCCchHHHHHHHHHHHCCCHHHEEEEecCCCCCCCCCCCchhHHHHH
Confidence 4577888888999999998654 34667889999999999999854 4467788776644
No 110
>KOG3049 consensus Succinate dehydrogenase, Fe-S protein subunit [Energy production and conversion]
Probab=70.19 E-value=2.7 Score=43.28 Aligned_cols=48 Identities=19% Similarity=0.407 Sum_probs=35.0
Q ss_pred CCCcHHHHHh---hc-cCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhh
Q 003040 30 PSTTLLEFLR---YH-TRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCS 87 (854)
Q Consensus 30 p~~~Ll~~LR---~~-~~l~g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~ 87 (854)
=+.++||.|- ++ -.---.+.+|.||.||.|..-+ +|..-.+|+..+-+
T Consensus 75 CGpMvLDALiKIKnE~DptLTFRRSCREGICGSCAMNI----------~G~NtLACi~kId~ 126 (288)
T KOG3049|consen 75 CGPMVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNI----------NGTNTLACICKIDQ 126 (288)
T ss_pred cchHHHHHHHHhhcccCCceehhhhhhccccccceecc----------CCCceeEEEEeecc
Confidence 4567888873 22 2223478999999999999988 57777889877554
No 111
>TIGR03194 4hydrxCoA_A 4-hydroxybenzoyl-CoA reductase, alpha subunit. This model represents the largest chain, alpha, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=69.94 E-value=6.2 Score=49.23 Aligned_cols=61 Identities=18% Similarity=0.188 Sum_probs=47.2
Q ss_pred CCCCeEEEEECCCCcEEEEeCCCCh-----HHHHHHHHHHhCCCCCCEEEEeCC------cCCCCCCCCCCc
Q 003040 786 METQTALAVPDEDNCLVVYSSIQCP-----ESAHATIARCLGIPEHNVRVITRR------VGGAFGGKAIKA 846 (854)
Q Consensus 786 mEp~~a~A~~~~dg~l~V~~stQ~p-----~~~~~~vA~~Lglp~~kV~V~~~~------~GGgFGgK~~~~ 846 (854)
..+..+....+.||.++|++++... ..+++.+|+.||+|.++|+|.... -+|.+|++.+..
T Consensus 442 ~~~~~a~v~l~~dG~v~v~~g~~e~GqG~~T~~~qiaAe~LGip~d~V~v~~~DT~~~p~~~gt~~Sr~t~~ 513 (746)
T TIGR03194 442 EPHATVALKLDFDGGITLLTGAADIGQGSSTIASQVAAEVLGVRLSRIRVISADSALTPKDNGSYSSRVTFM 513 (746)
T ss_pred CCCceEEEEEcCCccEEEEEcCCCCCCCHHHHHHHHHHHHhCCCHHhEEEEccCCCCCCCCCCChhHhHHHH
Confidence 3456778888888999999887544 446788899999999999998644 467777776644
No 112
>PRK07440 hypothetical protein; Provisional
Probab=67.91 E-value=6.7 Score=33.65 Aligned_cols=31 Identities=29% Similarity=0.465 Sum_probs=24.4
Q ss_pred eeEEEEEECCEEEEEecCCCCCcHHHHHhhccCCc
Q 003040 11 RHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFK 45 (854)
Q Consensus 11 ~~~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~ 45 (854)
+.+|.++|||+++++. ..+||.++|++ +++.
T Consensus 2 ~~~m~i~vNG~~~~~~---~~~tl~~lL~~-l~~~ 32 (70)
T PRK07440 2 SNPITLQVNGETRTCS---SGTSLPDLLQQ-LGFN 32 (70)
T ss_pred CCceEEEECCEEEEcC---CCCCHHHHHHH-cCCC
Confidence 3478999999998874 47999999974 4653
No 113
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=64.58 E-value=9.3 Score=34.09 Aligned_cols=35 Identities=14% Similarity=0.301 Sum_probs=27.6
Q ss_pred CCCceeEEEEEECCEEEEEecCCCCCcHHHHHhhccCCc
Q 003040 7 HGGTRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFK 45 (854)
Q Consensus 7 ~~~~~~~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~ 45 (854)
-+++.+++.++|||+.+++. ...||.++|.. +++.
T Consensus 12 ~~~~~~~m~I~VNG~~~~~~---~~~tl~~LL~~-l~~~ 46 (84)
T PRK06083 12 EGAAMVLITISINDQSIQVD---ISSSLAQIIAQ-LSLP 46 (84)
T ss_pred cCCCCceEEEEECCeEEEcC---CCCcHHHHHHH-cCCC
Confidence 45667789999999999975 47899999974 4553
No 114
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=59.62 E-value=3.8 Score=43.75 Aligned_cols=16 Identities=50% Similarity=1.186 Sum_probs=14.6
Q ss_pred ccCCCCCCCCccEEEE
Q 003040 48 KLGCGEGGCGACVVLL 63 (854)
Q Consensus 48 k~gC~~G~CGaCtV~v 63 (854)
..+|+.|.||+|.|.+
T Consensus 214 ~m~cg~G~C~~C~~~~ 229 (250)
T PRK00054 214 RMKCGIGACGACVCDT 229 (250)
T ss_pred cccCcCcccCcCCccc
Confidence 5689999999999987
No 115
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=59.43 E-value=9.2 Score=50.76 Aligned_cols=61 Identities=18% Similarity=0.111 Sum_probs=47.1
Q ss_pred CCCCeEEEEECCCCcEEEEeCCCCh----H-HHHHHHHHHhCCCCCCEEEEeC------CcCCCCCCCCCCc
Q 003040 786 METQTALAVPDEDNCLVVYSSIQCP----E-SAHATIARCLGIPEHNVRVITR------RVGGAFGGKAIKA 846 (854)
Q Consensus 786 mEp~~a~A~~~~dg~l~V~~stQ~p----~-~~~~~vA~~Lglp~~kV~V~~~------~~GGgFGgK~~~~ 846 (854)
+...++++....||.++|+.+++.. + .+.+.+|+.||||.++|+|... ..+|.+|++.+..
T Consensus 1015 ~~~~~a~v~i~~DGsV~V~~G~~e~GQG~~T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~gt~gSr~t~~ 1086 (1330)
T TIGR02969 1015 MGQAAALVHIYLDGSVLVTHGGIEMGQGVHTKMIQVVSRELKMPMSNVHLRGTSTETVPNTNASGGSVVADL 1086 (1330)
T ss_pred CCCccEEEEEcCCceEEEEECCcCcCCChHHHHHHHHHHHhCCCHHHEEEEcCCCCCCCCCCCCchHHHHHH
Confidence 4556788888888999999997543 2 3567889999999999999864 3477788776643
No 116
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=59.34 E-value=21 Score=46.19 Aligned_cols=81 Identities=14% Similarity=0.072 Sum_probs=55.9
Q ss_pred eeEEEEEECCEEEEEecCCCCCcHHHHHhhc---cCCccccc------CCCCCCCCccEEEEeecCCCcccCCceeeccc
Q 003040 11 RHSVVFAVNGEKFEVSSVDPSTTLLEFLRYH---TRFKSVKL------GCGEGGCGACVVLLSKYNPELDQLEDFTISSC 81 (854)
Q Consensus 11 ~~~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~---~~l~g~k~------gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sC 81 (854)
+..|+|++||+.++. .++.||...|--. .-=++.|. =|.-|.|--|.|.|+.-. . ....+.+|
T Consensus 10 ~~~~~~~~dg~~~~~---~~g~t~a~al~a~g~~~~~~s~~~~~prg~~c~~~~~~~c~v~i~~~~--~---~~~~~~ac 81 (985)
T TIGR01372 10 SRPLRFTFDGKSYSG---FAGDTLASALLANGVHLVGRSFKYHRPRGILTAGVEEPNALVTVGSGA--Q---REPNTRAT 81 (985)
T ss_pred CCeEEEEECCEEeec---CCCCHHHHHHHhCCCeeecccCCCCCCCcccccCccCCCeEEEECCCc--C---CCCCccce
Confidence 357999999999885 5799999988431 11133443 388777899999993110 0 01246899
Q ss_pred ccchhhccCceeEEecCCCC
Q 003040 82 LTLLCSVNGCLITTSEGLGN 101 (854)
Q Consensus 82 l~~~~~~~g~~i~TvEgl~~ 101 (854)
++++. +|..|.|.-+..+
T Consensus 82 ~~~~~--~gm~~~~~~~~~~ 99 (985)
T TIGR01372 82 TQELY--DGLVATSQNRWPS 99 (985)
T ss_pred eEEcc--cCCEEecccCCCc
Confidence 99965 6999999877653
No 117
>PLN02906 xanthine dehydrogenase
Probab=57.46 E-value=12 Score=49.84 Aligned_cols=62 Identities=15% Similarity=0.078 Sum_probs=47.6
Q ss_pred CCCCeEEEEECCCCcEEEEeCCC----ChH-HHHHHHHHHhCCCCCCEEEEe------CCcCCCCCCCCCCcH
Q 003040 786 METQTALAVPDEDNCLVVYSSIQ----CPE-SAHATIARCLGIPEHNVRVIT------RRVGGAFGGKAIKAM 847 (854)
Q Consensus 786 mEp~~a~A~~~~dg~l~V~~stQ----~p~-~~~~~vA~~Lglp~~kV~V~~------~~~GGgFGgK~~~~~ 847 (854)
+.+..+....+.||.++|+.+++ ..+ .+.+.+|+.||+|.++|+|.. +..+|.+|++.+...
T Consensus 1010 ~~~~~a~V~i~~DGsV~V~~G~~e~GQG~~T~~aQiaAe~LGip~d~V~v~~~DT~~~p~~~gT~aSr~t~~~ 1082 (1319)
T PLN02906 1010 MNQAGALVHVYTDGTVLVTHGGVEMGQGLHTKVAQVAASAFNIPLSSVFISETSTDKVPNASPTAASASSDMY 1082 (1319)
T ss_pred CCccceEEEEcCCceEEEEECCccCCCChHHHHHHHHHHHHCCCHHHEEEEccCCCCCCCCCCCccchhhHhH
Confidence 45567888888889999999774 333 355778899999999999985 445788888876543
No 118
>TIGR03196 pucD xanthine dehydrogenase D subunit. This gene has been characterized in B. subtilis as the molybdopterin binding-subunit of xanthine dehydrogenase (pucD), acting in conjunction with pucC, the FAD-binding subunit and pucE, the FeS-binding subunit. The more common XDH complex (GenProp0640) includes the xdhB gene which is related to pucD. It appears that most of the relatives of pucD outside of this narrow clade are involved in other processes as they are found in unrelated genomic contexts, contain the more common XDH complex and/or do not appear to process purines to allantoin.
Probab=56.97 E-value=15 Score=46.02 Aligned_cols=58 Identities=12% Similarity=0.078 Sum_probs=43.6
Q ss_pred eEEEEECCCCc--EEEEeCCCCh----H-HHHHHHHHHhCCCCCCEEEEe------CCcCCCCCCCCCCcH
Q 003040 790 TALAVPDEDNC--LVVYSSIQCP----E-SAHATIARCLGIPEHNVRVIT------RRVGGAFGGKAIKAM 847 (854)
Q Consensus 790 ~a~A~~~~dg~--l~V~~stQ~p----~-~~~~~vA~~Lglp~~kV~V~~------~~~GGgFGgK~~~~~ 847 (854)
.+.+..+.||. ++|+++++.. . .+.+.+|+.||+|.++|+|.. +.-+|.+|++.+...
T Consensus 467 ~a~v~l~~dGsv~v~v~~g~~d~GQG~~T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~gt~~Sr~t~~~ 537 (768)
T TIGR03196 467 GARLELAEDGTVKIRAHFACAECGQGFLAAAEQIAMEELGCAAEDISIAIADTAKGPKAGSSSASRGTSMS 537 (768)
T ss_pred cEEEEEeCCCCeEEEEEECCCCcCCCHHHHHHHHHHHHhCCCHHHEEEecCCCCCCCCCCCCchhhhhHhH
Confidence 56777777884 8898776443 3 355778999999999999985 456788888877543
No 119
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=56.16 E-value=14 Score=46.94 Aligned_cols=58 Identities=12% Similarity=0.135 Sum_probs=43.0
Q ss_pred CCeEEEEECCCCcEEEEeCCCCh-----HHHHHHHHHHhCCCCCCEEEEeC------CcCCCCCCCCCCc
Q 003040 788 TQTALAVPDEDNCLVVYSSIQCP-----ESAHATIARCLGIPEHNVRVITR------RVGGAFGGKAIKA 846 (854)
Q Consensus 788 p~~a~A~~~~dg~l~V~~stQ~p-----~~~~~~vA~~Lglp~~kV~V~~~------~~GGgFGgK~~~~ 846 (854)
+..++.... ||.++|+++++.. ..+.+.+|+.||+|.++|+|... .-+|.+|++.+..
T Consensus 594 ~~~~~~~~~-DGsv~v~~g~~e~GQG~~T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~gt~aSR~t~~ 662 (848)
T TIGR03311 594 TGRCNLAVE-DGKVHIRTSAACIGQGLGTVLTQIVCETTGLPPEVIVCELPDTALTPDSGTTTASRQSLF 662 (848)
T ss_pred cceEEEEEc-CCEEEEEECCCCcCcCHHHHHHHHHHHHHCCCHHHEEEEcCCCCCCCCCCCCchhhHHHH
Confidence 445566666 7899999998654 23567788999999999999863 4567777776644
No 120
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=55.34 E-value=7.1 Score=41.41 Aligned_cols=18 Identities=39% Similarity=0.899 Sum_probs=15.6
Q ss_pred ccccCCCCCCCCccEEEE
Q 003040 46 SVKLGCGEGGCGACVVLL 63 (854)
Q Consensus 46 g~k~gC~~G~CGaCtV~v 63 (854)
..+-+|+.|.||+|+|-.
T Consensus 211 ~~~m~Cg~G~C~~C~~~~ 228 (243)
T cd06192 211 NSPMCCGIGICGACTIET 228 (243)
T ss_pred CccccCccccccceEEEe
Confidence 356789999999999976
No 121
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=55.15 E-value=55 Score=28.88 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=35.2
Q ss_pred CceeeeeEEEEcccCCCcceeHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003040 470 GIRVNNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLL 515 (854)
Q Consensus 470 ~~~i~~~ria~Ggv~~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l 515 (854)
+|+|++++|.=-.+... . ..+.|+.|.|.+++.+.+.+++..+
T Consensus 26 ~G~I~~i~i~gDf~~~~-~--i~~le~~L~G~~~~~~~i~~~l~~~ 68 (86)
T PF10437_consen 26 NGIIKDIKIYGDFFGPE-D--IEELEEALIGCPYDREAIKEALNSV 68 (86)
T ss_dssp TTEEEEEEEEECBS-CC-C--HHHHHHHHTTCBSSHHHHHHHHHHC
T ss_pred CCEEEEEEEECCCCCch-H--HHHHHHHHHhcCCCHHHHHHHHHHh
Confidence 58999999974445544 4 7899999999999999999998876
No 122
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=50.82 E-value=19 Score=30.80 Aligned_cols=31 Identities=19% Similarity=0.397 Sum_probs=25.2
Q ss_pred eEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcc
Q 003040 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKS 46 (854)
Q Consensus 12 ~~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g 46 (854)
|+|++.+||+.+++. ..+|+.|+|++ +++..
T Consensus 1 ~~m~i~~ng~~~e~~---~~~tv~dLL~~-l~~~~ 31 (68)
T COG2104 1 MPMTIQLNGKEVEIA---EGTTVADLLAQ-LGLNP 31 (68)
T ss_pred CcEEEEECCEEEEcC---CCCcHHHHHHH-hCCCC
Confidence 578999999999975 34999999985 57765
No 123
>PF10418 DHODB_Fe-S_bind: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; InterPro: IPR019480 Lactococcus lactis is one of the few organisms with two dihydroorotate dehydrogenases (DHODs) A and B []. The B enzyme is typical of DHODs in Gram-positive bacteria that use NAD+ as the second substrate. DHODB is a heterotetramer composed of a central homodimer of PyrDB subunits resembling the DHODA structure and two PyrK subunits along with three different cofactors: FMN, FAD, and a [2Fe-2S] cluster. The [2Fe-2S] iron-sulphur cluster binds to this C-terminal domain of the PyrK subunit, which is at the interface between the flavin and NAD binding domains and contains three beta-strands. The four cysteine residues at the N-terminal part of this domain are the ones that bind, in pairs, to the iron-sulphur cluster. The conformation of the whole molecule means that the iron-sulphur cluster is localized in a well-ordered part of this domain close to the FAD binding site []. The FAD and NAD binding domains are IPR008333 from INTERPRO and IPR001433 from INTERPRO respectively. ; PDB: 1EP2_B 1EP3_B 1EP1_B.
Probab=49.67 E-value=10 Score=28.89 Aligned_cols=17 Identities=47% Similarity=1.288 Sum_probs=12.7
Q ss_pred ccCCCCCCCCccEEEEe
Q 003040 48 KLGCGEGGCGACVVLLS 64 (854)
Q Consensus 48 k~gC~~G~CGaCtV~v~ 64 (854)
+-+|+-|.|++|.|-..
T Consensus 3 ~M~CG~G~C~~C~v~~~ 19 (40)
T PF10418_consen 3 RMACGVGACGGCVVPVK 19 (40)
T ss_dssp --SSSSSSS-TTEEECS
T ss_pred cccCCCcEeCCcEeeee
Confidence 56899999999999873
No 124
>PF02738 Ald_Xan_dh_C2: Molybdopterin-binding domain of aldehyde dehydrogenase; InterPro: IPR008274 Aldehyde oxidase (1.2.3.1 from EC) catalyses the conversion of an aldehyde in the presence of oxygen and water to an acid and hydrogen peroxide. The enzyme is a homodimer, and requires FAD, molybdenum and two 2FE-2S clusters as cofactors. Xanthine dehydrogenase (1.1.1.204 from EC) catalyses the hydrogenation of xanthine to urate, and also requires FAD, molybdenum and two 2FE-2S clusters as cofactors. This activity is often found in a bifunctional enzyme with xanthine oxidase (1.1.3.22 from EC) activity too. The enzyme can be converted from the dehydrogenase form to the oxidase form irreversibly by proteolysis or reversibly through oxidation of sulphydryl groups.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3NVZ_C 3NVY_C 1FO4_B 3NRZ_L 3AM9_A 3B9J_C 3AX7_B 3NVW_L 3BDJ_A 3ETR_N ....
Probab=48.88 E-value=40 Score=40.54 Aligned_cols=58 Identities=28% Similarity=0.385 Sum_probs=38.7
Q ss_pred CCeEEEEECCCCcEEEEeCC----CChH-HHHHHHHHHhCCCCCCEEEEeCC------cCCCCCCCCCC
Q 003040 788 TQTALAVPDEDNCLVVYSSI----QCPE-SAHATIARCLGIPEHNVRVITRR------VGGAFGGKAIK 845 (854)
Q Consensus 788 p~~a~A~~~~dg~l~V~~st----Q~p~-~~~~~vA~~Lglp~~kV~V~~~~------~GGgFGgK~~~ 845 (854)
..++....+.||.++|+++. |... .+.+.+|+.||+|+++|+|.... -+|.+|++.+.
T Consensus 319 ~~~a~v~l~~DG~v~v~~~~~e~GqG~~T~~~qiaAe~Lgi~~~~V~v~~~dT~~~p~~~~t~gSr~t~ 387 (547)
T PF02738_consen 319 QSSARVRLNPDGSVTVYTGGVEMGQGSRTALAQIAAEELGIPPEDVRVVSGDTDTTPYDGGTGGSRSTY 387 (547)
T ss_dssp EEEEEEEE-TTS-EEEEES--BSSSSHHHHHHHHHHHHHTS-GGGEEEEECBTTTS-SB--S-TTTHHH
T ss_pred CCcEEEEEEeCCCEEEEEecccCCcchhhhHHHHHHHHhCCChhhEEEEeCCCcCCCCCCCCccchhhH
Confidence 45677888889999999886 5555 45678899999999999998643 45666666553
No 125
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=47.43 E-value=7.6 Score=41.91 Aligned_cols=18 Identities=39% Similarity=0.888 Sum_probs=15.8
Q ss_pred cccccCCCCCCCCccEEE
Q 003040 45 KSVKLGCGEGGCGACVVL 62 (854)
Q Consensus 45 ~g~k~gC~~G~CGaCtV~ 62 (854)
-.++..|+.|.||+|.|-
T Consensus 223 ~~~~m~cg~g~c~~c~~~ 240 (261)
T TIGR02911 223 YERKMCCGVGKCGHCKID 240 (261)
T ss_pred eccceeccCcCCCCcccC
Confidence 467899999999999984
No 126
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=46.32 E-value=21 Score=30.03 Aligned_cols=28 Identities=32% Similarity=0.444 Sum_probs=22.4
Q ss_pred EEEEECCEEEEEecCCCCCcHHHHHhhccCCc
Q 003040 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFK 45 (854)
Q Consensus 14 i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~ 45 (854)
++++|||+.+++. +.+||.++|.. +++.
T Consensus 1 m~i~vNG~~~~~~---~~~tl~~ll~~-l~~~ 28 (65)
T PRK05863 1 MIVVVNEEQVEVD---EQTTVAALLDS-LGFP 28 (65)
T ss_pred CEEEECCEEEEcC---CCCcHHHHHHH-cCCC
Confidence 4689999999875 47899999985 5664
No 127
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=45.45 E-value=22 Score=29.73 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=22.4
Q ss_pred EEEEECCEEEEEecCCCCCcHHHHHhhccCCcc
Q 003040 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKS 46 (854)
Q Consensus 14 i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g 46 (854)
++++|||+.+++. ..+||.++|.. +++..
T Consensus 1 m~i~vNG~~~~~~---~~~tl~~lL~~-l~~~~ 29 (66)
T PRK05659 1 MNIQLNGEPRELP---DGESVAALLAR-EGLAG 29 (66)
T ss_pred CEEEECCeEEEcC---CCCCHHHHHHh-cCCCC
Confidence 4689999998864 47899999974 56643
No 128
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=45.19 E-value=22 Score=29.87 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=21.9
Q ss_pred EEEEECCEEEEEecCCCCCcHHHHHhhccCCc
Q 003040 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFK 45 (854)
Q Consensus 14 i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~ 45 (854)
+.++|||+.+++. ..+||.++|.. +++.
T Consensus 1 m~i~vNg~~~~~~---~~~tl~~ll~~-l~~~ 28 (66)
T PRK08053 1 MQILFNDQPMQCA---AGQTVHELLEQ-LNQL 28 (66)
T ss_pred CEEEECCeEEEcC---CCCCHHHHHHH-cCCC
Confidence 4689999999975 47899999974 4554
No 129
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=43.05 E-value=41 Score=36.42 Aligned_cols=99 Identities=13% Similarity=0.133 Sum_probs=63.0
Q ss_pred ceeecC-CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeccccCceeeeCCCcccccceEecCCcEEeccc
Q 003040 234 AMLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGAT 312 (854)
Q Consensus 234 ~~~~~~-~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~ 312 (854)
.+.+.+ ..-|+.|.+.+ + . -...++.+|+-+.+-... ...+| + ..++..++.+++.|++||+
T Consensus 12 t~~iGG~A~~~~~~~~~~-l----~-------~p~~vlG~GSNlLv~D~g--~~~vv-~--~~~~~~~~~~~~~v~~~AG 74 (257)
T PRK13904 12 SVKIGPPLEVLVLEEIDD-F----S-------QDGQIIGGANNLLISPNP--KNLAI-L--GKNFDYIKIDGECLEIGGA 74 (257)
T ss_pred ceeECceEEEEEEechhh-h----C-------CCeEEEeceeEEEEecCC--ccEEE-E--ccCcCeEEEeCCEEEEEcC
Confidence 344555 44567777776 4 2 357888888888764432 34555 2 2346777777889999999
Q ss_pred ccHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccC
Q 003040 313 VTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQR 367 (854)
Q Consensus 313 vTl~~l~~~l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp 367 (854)
+.+.++.....+. .+- -+++.++.+ |||||-+.+...
T Consensus 75 ~~l~~l~~~~~~~----------gl~----GlE~l~gIP----GtVGGAv~mNaG 111 (257)
T PRK13904 75 TKSGKIFNYAKKN----------NLG----GFEFLGKLP----GTLGGLVKMNAG 111 (257)
T ss_pred CcHHHHHHHHHHC----------CCc----hhhhhcCCC----ccHHHHHHhcCC
Confidence 9999998875432 111 123334433 788888766544
No 130
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=40.30 E-value=11 Score=40.86 Aligned_cols=17 Identities=41% Similarity=0.982 Sum_probs=14.9
Q ss_pred ccccCCCCCCCCccEEE
Q 003040 46 SVKLGCGEGGCGACVVL 62 (854)
Q Consensus 46 g~k~gC~~G~CGaCtV~ 62 (854)
.++-.|+.|.||+|+|.
T Consensus 226 ~~~m~cg~g~c~~c~~~ 242 (263)
T PRK08221 226 ERKMCCGVGKCGHCKID 242 (263)
T ss_pred cceeEccCcccCCcccC
Confidence 46789999999999984
No 131
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=40.12 E-value=46 Score=38.58 Aligned_cols=79 Identities=15% Similarity=0.190 Sum_probs=51.7
Q ss_pred EEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeccccCceeeeCCCcccccceEecCCcEEecccccHHHHHHHH
Q 003040 243 WHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEAL 322 (854)
Q Consensus 243 ~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~l 322 (854)
+-.|+|++|+.++.+.... .+.+.|.|. -++.+-+....-..+|+++.+.---++.-+.-.|++=|++|+.||.+.+
T Consensus 53 v~yP~teaeL~~lVa~A~~-a~~kirvVg--~gHSp~~l~ctdg~lisl~~lnkVv~~dpe~~tvTV~aGirlrQLie~~ 129 (518)
T KOG4730|consen 53 VNYPKTEAELVELVAAATE-AGKKIRVVG--SGHSPSKLVCTDGLLISLDKLNKVVEFDPELKTVTVQAGIRLRQLIEEL 129 (518)
T ss_pred cCCCCCHHHHHHHHHHHHH-cCceEEEec--ccCCCCcceeccccEEEhhhhccceeeCchhceEEeccCcCHHHHHHHH
Confidence 4459999999999886421 234566655 3333322222334788887765444444455788999999999999987
Q ss_pred HH
Q 003040 323 KE 324 (854)
Q Consensus 323 ~~ 324 (854)
++
T Consensus 130 ~~ 131 (518)
T KOG4730|consen 130 AK 131 (518)
T ss_pred Hh
Confidence 64
No 132
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=39.79 E-value=32 Score=37.50 Aligned_cols=49 Identities=27% Similarity=0.535 Sum_probs=36.7
Q ss_pred eEEEEEECCE-EEEEecCCCCCcHHHHHhhccCCcccccCCC-CCCCCccEEEE
Q 003040 12 HSVVFAVNGE-KFEVSSVDPSTTLLEFLRYHTRFKSVKLGCG-EGGCGACVVLL 63 (854)
Q Consensus 12 ~~i~f~~Ng~-~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~-~G~CGaCtV~v 63 (854)
..+++.|||. ....+ ++++.+||..|-.. |+. +-..|+ .|.||-|.|.|
T Consensus 35 gd~ti~IN~d~e~~~t-~~aG~kLL~~L~~~-gif-i~SaCGGggsC~QCkv~v 85 (410)
T COG2871 35 GDITIKINGDPEKTKT-VPAGGKLLGALASS-GIF-ISSACGGGGSCGQCKVRV 85 (410)
T ss_pred CceEEEeCCChhhcee-cCCchhHHHHHHhC-Ccc-cccCCCCCccccccEEEE
Confidence 4689999983 33444 68899999999865 543 345576 77899999998
No 133
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=35.61 E-value=37 Score=28.15 Aligned_cols=27 Identities=11% Similarity=0.127 Sum_probs=21.2
Q ss_pred EEEEECCEEEEEecCCCCCcHHHHHhhccCC
Q 003040 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRF 44 (854)
Q Consensus 14 i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l 44 (854)
++++|||+.+++. +.+||.++|.. +++
T Consensus 1 m~i~vNg~~~~~~---~~~tl~~ll~~-l~~ 27 (65)
T PRK06944 1 MDIQLNQQTLSLP---DGATVADALAA-YGA 27 (65)
T ss_pred CEEEECCEEEECC---CCCcHHHHHHh-hCC
Confidence 4689999999864 57899999974 555
No 134
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=35.29 E-value=15 Score=39.39 Aligned_cols=17 Identities=35% Similarity=0.985 Sum_probs=15.6
Q ss_pred ccccCCCCCCCCccEEE
Q 003040 46 SVKLGCGEGGCGACVVL 62 (854)
Q Consensus 46 g~k~gC~~G~CGaCtV~ 62 (854)
.++..|++|-||+|.|.
T Consensus 224 ~~~~~~~~g~c~~c~~~ 240 (253)
T cd06221 224 ERRMKCGVGKCGHCQIG 240 (253)
T ss_pred hhccccCCccccCcccC
Confidence 67889999999999996
No 135
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=34.56 E-value=42 Score=28.41 Aligned_cols=29 Identities=24% Similarity=0.425 Sum_probs=21.6
Q ss_pred EEEEECCEEEEEecCCCCCcHHHHHhhccCCc
Q 003040 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFK 45 (854)
Q Consensus 14 i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~ 45 (854)
++++|||+.+++.. +..||.++|.. +++.
T Consensus 1 m~I~vNG~~~~~~~--~~~tv~~lL~~-l~~~ 29 (67)
T PRK07696 1 MNLKINGNQIEVPE--SVKTVAELLTH-LELD 29 (67)
T ss_pred CEEEECCEEEEcCC--CcccHHHHHHH-cCCC
Confidence 46899999998752 23689999974 5664
No 136
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=33.46 E-value=20 Score=37.77 Aligned_cols=16 Identities=38% Similarity=0.928 Sum_probs=14.5
Q ss_pred ccCCCCCCCCccEEEE
Q 003040 48 KLGCGEGGCGACVVLL 63 (854)
Q Consensus 48 k~gC~~G~CGaCtV~v 63 (854)
...|+.|.||+|.|-.
T Consensus 200 f~~cg~g~C~~C~v~~ 215 (233)
T cd06220 200 YMKCGIGICGSCCIDP 215 (233)
T ss_pred cccCcCCCcCccEecc
Confidence 4689999999999987
No 137
>PLN00192 aldehyde oxidase
Probab=32.55 E-value=71 Score=42.76 Aligned_cols=61 Identities=16% Similarity=0.081 Sum_probs=44.8
Q ss_pred CCCCeEEEEECCCCcEEEEeCCC----ChH-HHHHHHHHHhCC--------CCCCEEEEeC------CcCCCCCCCCCCc
Q 003040 786 METQTALAVPDEDNCLVVYSSIQ----CPE-SAHATIARCLGI--------PEHNVRVITR------RVGGAFGGKAIKA 846 (854)
Q Consensus 786 mEp~~a~A~~~~dg~l~V~~stQ----~p~-~~~~~vA~~Lgl--------p~~kV~V~~~------~~GGgFGgK~~~~ 846 (854)
+-+..+++....||.++|+.+.+ ..+ .+.+.+|+.||+ |.++|+|... ..+|.+|++.+..
T Consensus 1028 ~~~~~a~v~i~~DGsv~v~~G~~e~GQG~~T~~aQiaA~~LGi~~~~~~~ip~e~I~v~~~dT~~~p~~~~t~gSr~t~~ 1107 (1344)
T PLN00192 1028 LRPTPGKVSILSDGSIAVEVGGIEIGQGLWTKVKQMAAFGLGMIKCDGGEDLLDKIRVIQSDTLSMIQGGFTAGSTTSES 1107 (1344)
T ss_pred ccCCceEEEEeCCceEEEEECCCCCCCCHHHHHHHHHHHHhCCccccccCCChhhEEEEecCCCCCCCCCCCchhhhHHH
Confidence 33457777787789999999874 433 355777889995 9999999854 4467777776644
No 138
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=31.84 E-value=44 Score=39.13 Aligned_cols=49 Identities=35% Similarity=0.608 Sum_probs=38.6
Q ss_pred EEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCC-CCCCCccEEEEeecC
Q 003040 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCG-EGGCGACVVLLSKYN 67 (854)
Q Consensus 13 ~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~-~G~CGaCtV~v~~~~ 67 (854)
.++|.=-||+.+ +..+|.|+.-|+ +| -+++.-|+ .|.||-|.|.|.+.+
T Consensus 3 ~v~f~psgkr~~----~~g~~il~aar~-~g-v~i~s~cggk~~cgkc~v~v~~g~ 52 (614)
T COG3894 3 LVTFMPSGKRGE----DEGTTILDAARR-LG-VYIRSVCGGKGTCGKCQVVVQEGN 52 (614)
T ss_pred eeEeecCCCcCC----CCCchHHHHHHh-hC-ceEeeecCCCccccceEEEEEeCC
Confidence 367888898876 458999999985 45 45777787 899999999996543
No 139
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=31.75 E-value=27 Score=37.25 Aligned_cols=29 Identities=31% Similarity=0.466 Sum_probs=20.8
Q ss_pred HHHHHhhccCCcc-----cccCCCCCCCCccEEEE
Q 003040 34 LLEFLRYHTRFKS-----VKLGCGEGGCGACVVLL 63 (854)
Q Consensus 34 Ll~~LR~~~~l~g-----~k~gC~~G~CGaCtV~v 63 (854)
+.+.|++ .|+.. .+-+|+.|.||+|+|..
T Consensus 195 ~~~~l~~-~Gv~~~~s~e~~m~Cg~G~C~~C~~~~ 228 (248)
T cd06219 195 VSELTRP-YGIPTVVSLNPIMVDGTGMCGACRVTV 228 (248)
T ss_pred HHHHHHH-cCCCEEEEecccccCccceeeeEEEEe
Confidence 3455654 34432 57899999999999975
No 140
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=31.19 E-value=64 Score=27.50 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=23.2
Q ss_pred EEEEEECCE--EEEEecCCCCCcHHHHHhhccCCc
Q 003040 13 SVVFAVNGE--KFEVSSVDPSTTLLEFLRYHTRFK 45 (854)
Q Consensus 13 ~i~f~~Ng~--~~~~~~~~p~~~Ll~~LR~~~~l~ 45 (854)
+|++.|||+ ..+++ +++++|+.+.|+ ++++.
T Consensus 4 mm~v~vng~~~~~~~~-~~~~~tv~~ll~-~l~~~ 36 (70)
T PRK08364 4 MIRVKVIGRGIEKEIE-WRKGMKVADILR-AVGFN 36 (70)
T ss_pred EEEEEEeccccceEEE-cCCCCcHHHHHH-HcCCC
Confidence 589999999 44444 567899999997 45664
No 141
>PRK05802 hypothetical protein; Provisional
Probab=30.11 E-value=31 Score=38.58 Aligned_cols=18 Identities=56% Similarity=1.147 Sum_probs=16.1
Q ss_pred ccccCCCCCCCCccEEEE
Q 003040 46 SVKLGCGEGGCGACVVLL 63 (854)
Q Consensus 46 g~k~gC~~G~CGaCtV~v 63 (854)
-.+-.||.|.||+|+|-.
T Consensus 287 e~~M~CG~G~Cg~C~v~~ 304 (320)
T PRK05802 287 NAKMCCGEGICGACTVRY 304 (320)
T ss_pred CCeeeCcCccCCeeEEEE
Confidence 358899999999999987
No 142
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=29.74 E-value=54 Score=27.36 Aligned_cols=27 Identities=30% Similarity=0.427 Sum_probs=20.2
Q ss_pred EEEEECCEEEEEecCCCCCcHHHHHhhccCCc
Q 003040 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFK 45 (854)
Q Consensus 14 i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~ 45 (854)
++++|||+.++++ .+||.++|.. +++.
T Consensus 1 m~i~~Ng~~~~~~----~~tl~~Ll~~-l~~~ 27 (65)
T PRK06488 1 MKLFVNGETLQTE----ATTLALLLAE-LDYE 27 (65)
T ss_pred CEEEECCeEEEcC----cCcHHHHHHH-cCCC
Confidence 4689999999973 3589999974 4543
No 143
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=26.02 E-value=1.4e+02 Score=29.64 Aligned_cols=53 Identities=19% Similarity=0.404 Sum_probs=40.4
Q ss_pred CCceeEEEEEE-CCEEEEEecCCCCCcHHHHHhh-ccCCcccccCCC-CCCCCccEEEEe
Q 003040 8 GGTRHSVVFAV-NGEKFEVSSVDPSTTLLEFLRY-HTRFKSVKLGCG-EGGCGACVVLLS 64 (854)
Q Consensus 8 ~~~~~~i~f~~-Ng~~~~~~~~~p~~~Ll~~LR~-~~~l~g~k~gC~-~G~CGaCtV~v~ 64 (854)
.++..+|+|.. ||+++.+. ..-+++||+...+ .+.|-| .|. .=.|-.|-|.|+
T Consensus 40 ~~e~i~Itfv~~dG~~~~i~-g~vGdtlLd~ah~n~idleG---ACEgslACSTCHViv~ 95 (159)
T KOG3309|consen 40 KVEDIKITFVDPDGEEIKIK-GKVGDTLLDAAHENNLDLEG---ACEGSLACSTCHVIVD 95 (159)
T ss_pred CCceEEEEEECCCCCEEEee-eecchHHHHHHHHcCCCccc---cccccccccceEEEEc
Confidence 34456677765 68999997 5889999999954 567777 676 667888999883
No 144
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=23.85 E-value=68 Score=26.66 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=20.4
Q ss_pred EEECCEEEEEecCCCCCcHHHHHhhccCCc
Q 003040 16 FAVNGEKFEVSSVDPSTTLLEFLRYHTRFK 45 (854)
Q Consensus 16 f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~ 45 (854)
++|||+.+++. ..+||.++|.. +++.
T Consensus 1 i~iNg~~~~~~---~~~tv~~ll~~-l~~~ 26 (64)
T TIGR01683 1 ITVNGEPVEVE---DGLTLAALLES-LGLD 26 (64)
T ss_pred CEECCeEEEcC---CCCcHHHHHHH-cCCC
Confidence 47999999975 47899999974 5654
No 145
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=23.63 E-value=98 Score=26.70 Aligned_cols=34 Identities=15% Similarity=0.358 Sum_probs=26.6
Q ss_pred eEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcc
Q 003040 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKS 46 (854)
Q Consensus 12 ~~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g 46 (854)
+.|++..+|+.++++ ++++.|+.++=+.-..++|
T Consensus 1 ~~i~vk~~g~~~~v~-v~~~~Tv~~lK~~i~~~tg 34 (74)
T cd01813 1 VPVIVKWGGQEYSVT-TLSEDTVLDLKQFIKTLTG 34 (74)
T ss_pred CEEEEEECCEEEEEE-ECCCCCHHHHHHHHHHHHC
Confidence 368889999999997 8999999987654444444
No 146
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=22.91 E-value=44 Score=35.56 Aligned_cols=17 Identities=41% Similarity=1.001 Sum_probs=14.7
Q ss_pred ccCCCCCCCCccEEEEe
Q 003040 48 KLGCGEGGCGACVVLLS 64 (854)
Q Consensus 48 k~gC~~G~CGaCtV~v~ 64 (854)
+.-|+.|.||+|.+...
T Consensus 213 ~~~~~~g~c~~c~~~~~ 229 (246)
T cd06218 213 RMACGIGACLGCVVKTK 229 (246)
T ss_pred cccCccceecccEEEee
Confidence 45699999999999884
No 147
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=20.66 E-value=94 Score=25.87 Aligned_cols=27 Identities=37% Similarity=0.421 Sum_probs=20.7
Q ss_pred EEEECCEEEEEecCCCCCcHHHHHhhccCCc
Q 003040 15 VFAVNGEKFEVSSVDPSTTLLEFLRYHTRFK 45 (854)
Q Consensus 15 ~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~ 45 (854)
.++|||+.+++. ..+|+.++|.. +++.
T Consensus 1 ~i~iNg~~~~~~---~~~tv~~ll~~-l~~~ 27 (65)
T cd00565 1 KITVNGEPREVE---EGATLAELLEE-LGLD 27 (65)
T ss_pred CEEECCeEEEcC---CCCCHHHHHHH-cCCC
Confidence 378999999975 47899999964 5543
Done!