Query 003040
Match_columns 854
No_of_seqs 439 out of 3052
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 11:07:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003040.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003040hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zyv_A AOH1; oxidoreductase, m 100.0 1E-176 5E-181 1664.7 55.7 781 8-850 4-814 (1335)
2 3unc_A Xanthine dehydrogenase/ 100.0 2E-170 6E-175 1599.9 67.0 776 13-848 5-807 (1332)
3 2w3s_A Xanthine dehydrogenase; 100.0 5E-105 2E-109 911.3 35.0 444 12-549 1-453 (462)
4 1vlb_A Aldehyde oxidoreductase 100.0 1.3E-89 4.5E-94 842.0 36.9 413 12-849 2-431 (907)
5 1dgj_A Aldehyde oxidoreductase 100.0 2E-89 6.8E-94 840.4 35.1 414 12-850 2-434 (907)
6 3nvz_B Xanthine dehydrogenase/ 100.0 1.2E-59 3.9E-64 513.0 29.2 294 233-550 2-304 (305)
7 3hrd_C Nicotinate dehydrogenas 100.0 9.3E-59 3.2E-63 503.6 24.2 278 240-550 3-290 (296)
8 3nvw_A Xanthine dehydrogenase/ 100.0 1.6E-59 5.3E-64 459.2 15.2 162 11-184 2-163 (164)
9 1t3q_C Quinoline 2-oxidoreduct 100.0 1.3E-56 4.5E-61 484.9 26.7 271 240-550 5-283 (288)
10 1n62_C Carbon monoxide dehydro 100.0 1.8E-55 6.1E-60 476.6 26.4 274 240-550 5-286 (288)
11 3hrd_A Nicotinate dehydrogenas 100.0 9.5E-56 3.2E-60 502.2 21.4 241 599-848 3-248 (425)
12 1rm6_B 4-hydroxybenzoyl-COA re 100.0 3.6E-55 1.2E-59 478.7 25.1 270 240-548 6-322 (324)
13 3hrd_D Nicotinate dehydrogenas 100.0 1E-54 3.6E-59 425.5 18.5 152 11-186 3-154 (160)
14 1ffv_C CUTM, flavoprotein of c 100.0 1.2E-52 3.9E-57 454.3 27.0 273 240-549 5-285 (287)
15 3nvz_C Xanthine dehydrogenase/ 100.0 1.1E-52 3.7E-57 506.7 19.9 235 602-847 1-236 (755)
16 1rm6_A 4-hydroxybenzoyl-COA re 100.0 2.7E-52 9.1E-57 505.2 21.1 240 599-846 6-252 (769)
17 1ffv_A CUTS, iron-sulfur prote 100.0 8.8E-52 3E-56 407.3 17.4 152 11-186 3-154 (163)
18 1n62_A Carbon monoxide dehydro 100.0 1.2E-51 4.1E-56 407.5 17.6 153 11-186 3-155 (166)
19 2w3s_B Xanthine dehydrogenase; 100.0 2.5E-51 8.5E-56 496.7 21.6 235 603-847 2-236 (777)
20 1t3q_B Quinoline 2-oxidoreduct 100.0 2E-51 6.8E-56 498.7 18.0 238 603-847 13-263 (788)
21 1ffv_B CUTL, molybdoprotein of 100.0 4E-51 1.4E-55 496.5 15.4 240 601-847 15-276 (803)
22 1n62_B Carbon monoxide dehydro 100.0 4.5E-51 1.6E-55 496.8 14.5 239 602-847 19-279 (809)
23 1rm6_C 4-hydroxybenzoyl-COA re 100.0 5.9E-47 2E-51 373.9 17.0 153 10-186 1-153 (161)
24 1t3q_A Quinoline 2-oxidoreduct 100.0 1.9E-42 6.4E-47 344.9 16.8 153 9-185 7-159 (168)
25 3vr8_B Iron-sulfur subunit of 98.9 1.1E-09 3.6E-14 117.2 6.9 69 21-101 55-128 (282)
26 2wdq_B Succinate dehydrogenase 98.9 2.6E-09 8.9E-14 111.9 8.0 68 21-100 21-95 (238)
27 3c8y_A Iron hydrogenase 1; dit 98.8 3.9E-09 1.3E-13 124.3 5.9 107 14-138 2-115 (574)
28 2bs2_B Quinol-fumarate reducta 98.8 2.1E-08 7.2E-13 105.2 10.5 69 21-101 24-96 (241)
29 2h88_B Succinate dehydrogenase 98.7 1.7E-08 5.7E-13 106.8 8.9 82 8-101 6-104 (252)
30 1kf6_B Fumarate reductase iron 98.3 5.6E-07 1.9E-11 94.4 7.7 68 21-101 24-95 (243)
31 1l5p_A Ferredoxin; [2Fe-2S] cl 98.1 9.3E-06 3.2E-10 72.3 9.9 51 13-65 2-53 (93)
32 2wlb_A ETP1-FD, electron trans 97.8 2.3E-05 8E-10 71.0 5.9 54 9-65 1-56 (103)
33 1uxy_A MURB, uridine diphospho 97.8 1.9E-05 6.4E-10 86.9 6.3 153 240-422 15-180 (340)
34 1iue_A Ferredoxin; electron tr 97.8 3.5E-05 1.2E-09 69.2 6.9 51 11-64 2-52 (98)
35 1a70_A Ferredoxin; iron-sulfur 97.7 4.8E-05 1.6E-09 68.1 6.9 51 11-64 2-52 (97)
36 1jq4_A Methane monooxygenase c 97.7 2.3E-05 8E-10 70.3 4.5 51 11-64 2-55 (98)
37 1wri_A Ferredoxin II, ferredox 97.6 9.6E-05 3.3E-09 65.6 6.8 49 12-64 2-50 (93)
38 1awd_A Ferredoxin; electron tr 97.6 0.00013 4.4E-09 64.9 7.5 49 13-64 2-50 (94)
39 1frr_A Ferredoxin I; electron 97.6 9.5E-05 3.3E-09 65.7 6.3 49 12-64 2-51 (95)
40 1frd_A Heterocyst [2Fe-2S] fer 97.5 0.00013 4.3E-09 65.4 6.7 51 11-64 2-54 (98)
41 1czp_A Ferredoxin I; [2Fe-2S] 97.3 0.00025 8.7E-09 63.5 6.2 51 11-64 2-54 (98)
42 1hsk_A UDP-N-acetylenolpyruvoy 97.3 0.00015 5.1E-09 79.3 5.2 153 241-422 50-208 (326)
43 3lxf_A Ferredoxin; iron, iron- 97.3 0.00031 1.1E-08 63.7 6.0 51 13-65 2-54 (104)
44 1xlq_A Putidaredoxin, PDX; [2F 97.1 0.00041 1.4E-08 63.0 5.4 51 13-65 2-54 (106)
45 1uwm_A Ferredoxin VI, FDVI; el 97.1 0.00046 1.6E-08 62.6 5.5 51 13-65 2-54 (106)
46 3hui_A Ferredoxin; cytochrome 97.1 0.00061 2.1E-08 64.0 6.1 52 12-65 22-75 (126)
47 1i7h_A Ferredoxin; 2Fe-2S,elec 97.0 0.00051 1.7E-08 63.0 4.9 50 13-65 3-57 (111)
48 1b9r_A Protein (terpredoxin); 96.8 0.00055 1.9E-08 62.0 2.8 51 13-65 2-54 (105)
49 3tx1_A UDP-N-acetylenolpyruvoy 96.5 0.0048 1.6E-07 67.2 8.7 153 240-420 55-212 (322)
50 3i9v_3 NADH-quinone oxidoreduc 96.3 0.0024 8.1E-08 77.9 4.8 103 13-128 1-126 (783)
51 2y5c_A Adrenodoxin-like protei 96.2 0.0068 2.3E-07 55.2 6.0 50 13-65 7-58 (109)
52 2bt6_A Adrenodoxin 1; rutheniu 96.1 0.0052 1.8E-07 55.8 4.9 49 13-64 8-60 (108)
53 1doi_A 2Fe-2S ferredoxin; halo 96.0 0.0033 1.1E-07 59.2 3.5 49 12-64 28-76 (128)
54 2vfr_A Xylitol oxidase, aldito 95.8 0.0037 1.3E-07 70.6 3.2 102 241-365 22-123 (422)
55 4feh_A Oxidoreductase DPRE1; a 95.7 0.041 1.4E-06 63.1 11.3 160 240-422 43-213 (481)
56 4bby_A Alkyldihydroxyacetoneph 95.2 0.017 5.8E-07 68.9 6.3 109 241-367 207-319 (658)
57 3ah7_A [2Fe-2S]ferredoxin; [2F 95.1 0.027 9.3E-07 51.5 5.9 42 19-65 15-57 (113)
58 1krh_A Benzoate 1,2-dioxygenas 95.1 0.019 6.6E-07 62.4 5.6 48 14-64 4-54 (338)
59 3pm9_A Putative oxidoreductase 94.7 0.015 5E-07 66.8 3.6 106 241-367 53-161 (476)
60 2uuu_A Alkyldihydroxyacetoneph 94.6 0.027 9.2E-07 66.2 5.5 109 241-367 139-250 (584)
61 2gqt_A UDP-N-acetylenolpyruvyl 94.5 0.054 1.9E-06 57.3 7.1 146 236-421 18-170 (268)
62 3i99_A UDP-N-acetylenolpyruvoy 94.4 0.063 2.2E-06 59.1 7.6 107 236-367 26-137 (357)
63 2pia_A Phthalate dioxygenase r 94.0 0.04 1.4E-06 59.6 4.9 48 14-64 238-285 (321)
64 3n9z_C Adrenodoxin; cytochrome 93.9 0.013 4.4E-07 54.7 0.6 49 13-64 7-59 (123)
65 1e8g_A Vanillyl-alcohol oxidas 93.4 0.046 1.6E-06 63.9 4.4 108 240-367 71-185 (560)
66 1f0x_A DLDH, D-lactate dehydro 93.2 0.056 1.9E-06 63.2 4.6 109 241-367 47-160 (571)
67 1wvf_A 4-cresol dehydrogenase 93.0 0.058 2E-06 62.5 4.3 106 241-365 58-167 (520)
68 2exr_A Cytokinin dehydrogenase 92.7 0.11 3.8E-06 60.1 6.2 152 241-421 63-236 (524)
69 3js8_A Cholesterol oxidase; ch 92.5 0.12 4.1E-06 59.9 6.1 156 240-422 30-216 (540)
70 2i0k_A Oxidoreductase; MIX alp 92.4 0.077 2.6E-06 62.0 4.4 106 240-365 36-148 (561)
71 1y56_A Hypothetical protein PH 91.7 0.19 6.5E-06 57.6 6.5 70 12-98 14-90 (493)
72 3zyy_X Iron-sulfur cluster bin 90.5 0.25 8.6E-06 58.1 5.9 48 12-64 4-52 (631)
73 1w1o_A Cytokinin dehydrogenase 90.4 0.12 4.1E-06 60.0 3.1 156 241-422 70-244 (534)
74 3rja_A Carbohydrate oxidase; p 89.7 0.53 1.8E-05 53.7 7.8 84 240-324 37-121 (473)
75 3fw9_A Reticuline oxidase; BI- 88.4 0.76 2.6E-05 52.8 7.8 156 240-421 46-214 (495)
76 2y3s_A TAML; oxidoreductase; H 87.9 0.78 2.7E-05 53.1 7.6 82 240-323 59-140 (530)
77 2bvf_A 6-hydroxy-D-nicotine ox 87.7 0.67 2.3E-05 52.6 6.8 82 240-324 39-120 (459)
78 2wdx_A Putative hexose oxidase 86.9 0.91 3.1E-05 52.5 7.3 82 240-323 58-139 (523)
79 2ipi_A Aclacinomycin oxidoredu 86.6 0.89 3E-05 52.5 7.0 80 240-323 56-137 (521)
80 1zr6_A Glucooligosaccharide ox 86.2 0.94 3.2E-05 52.1 7.0 81 240-323 43-124 (503)
81 3vte_A Tetrahydrocannabinolic 86.2 0.84 2.9E-05 52.7 6.5 83 240-324 54-137 (518)
82 3pop_A GILR oxidase; FAD bindi 85.8 1 3.4E-05 51.8 6.9 82 240-323 35-116 (501)
83 2gag_A Heterotetrameric sarcos 83.7 2.6 8.9E-05 52.4 9.7 83 11-101 20-112 (965)
84 3hrd_B Nicotinate dehydrogenas 83.3 0.97 3.3E-05 49.1 5.0 61 786-846 21-92 (330)
85 3nvz_C Xanthine dehydrogenase/ 71.5 1.4 4.9E-05 53.1 2.1 61 786-846 444-515 (755)
86 1rm6_A 4-hydroxybenzoyl-COA re 69.9 3.9 0.00013 49.4 5.5 60 786-845 457-527 (769)
87 1n62_B Carbon monoxide dehydro 69.7 6.9 0.00024 47.6 7.6 61 788-848 506-577 (809)
88 2w3s_B Xanthine dehydrogenase; 66.4 3.7 0.00013 49.7 4.2 60 787-846 465-535 (777)
89 3tsh_A Pollen allergen PHL P 4 64.7 10 0.00035 43.3 7.3 82 241-324 54-138 (500)
90 1dgj_A Aldehyde oxidoreductase 63.4 9.3 0.00032 47.0 7.0 63 786-848 631-707 (907)
91 1ffv_B CUTL, molybdoprotein of 62.9 6.3 0.00022 47.9 5.4 59 788-846 500-569 (803)
92 1t3q_B Quinoline 2-oxidoreduct 61.7 6.7 0.00023 47.5 5.3 58 788-845 484-551 (788)
93 3unc_A Xanthine dehydrogenase/ 53.2 5.7 0.00019 50.9 2.8 61 786-846 1014-1085(1332)
94 1tyg_B YJBS; alpha beta barrel 52.7 14 0.00049 31.8 4.4 32 10-45 17-49 (87)
95 3zyv_A AOH1; oxidoreductase, m 51.9 6.6 0.00023 50.4 3.1 60 785-844 1018-1088(1335)
96 2kl0_A Putative thiamin biosyn 50.4 31 0.0011 28.5 6.0 62 15-101 2-64 (73)
97 1vlb_A Aldehyde oxidoreductase 50.0 10 0.00034 46.8 4.1 61 786-846 629-703 (907)
98 2l32_A Small archaeal modifier 49.4 11 0.00037 31.5 3.1 34 12-46 1-34 (74)
99 1v2y_A 3300001G02RIK protein; 41.6 16 0.00053 32.8 3.0 32 6-38 2-34 (105)
100 3kwl_A Uncharacterized protein 39.0 30 0.001 39.7 5.6 59 21-101 43-104 (514)
101 1rrb_A RAF-1 RBD, RAF proto-on 38.7 16 0.00055 32.6 2.5 44 13-64 20-64 (107)
102 1erd_A Pheromone ER-2; NMR {Eu 37.2 16 0.00054 25.6 1.7 28 109-136 5-32 (40)
103 2k5p_A THis protein, thiamine- 34.2 21 0.00071 30.1 2.5 66 14-100 1-67 (78)
104 1ep3_B Dihydroorotate dehydrog 31.2 17 0.0006 37.2 1.8 16 48-63 223-238 (262)
105 3abf_A 4-oxalocrotonate tautom 28.4 23 0.0008 27.7 1.7 30 813-842 24-56 (64)
106 1f0z_A THis protein; ubiquitin 26.6 24 0.00082 28.3 1.5 27 15-45 2-28 (66)
107 4hcn_B Polyubiquitin, ubiquiti 22.0 55 0.0019 28.2 3.1 35 5-40 16-51 (98)
108 1v5t_A 8430435I17RIK protein; 21.2 69 0.0024 27.2 3.5 39 8-47 4-43 (90)
109 3r07_C Putative lipoate-protei 20.2 2.5E+02 0.0086 24.0 6.9 42 470-515 27-69 (91)
110 1c1y_B Proto-onkogene serine/t 20.1 1.4E+02 0.0047 25.2 4.8 44 13-64 3-47 (77)
No 1
>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus}
Probab=100.00 E-value=1.4e-176 Score=1664.70 Aligned_cols=781 Identities=29% Similarity=0.501 Sum_probs=670.1
Q ss_pred CCceeEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhh
Q 003040 8 GGTRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCS 87 (854)
Q Consensus 8 ~~~~~~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~ 87 (854)
.-.+..|.|+|||+++++++++|++|||+|||++++|||||+||+||+||||||+|+++|+.++++.+++|||||+|+++
T Consensus 4 ~~~~~~l~F~vNG~~v~~~~~~p~~tLl~~LR~~~~ltGTK~gC~EG~CGACtV~v~~~~~~~~~~~~~avNsCl~~l~~ 83 (1335)
T 3zyv_A 4 SKESDELIFFVNGKKVTERNADPEVNLLFYLRKVIRLTGTKYGCGGGDCGACTVMISRYDPISKRISHFSATACLVPICS 83 (1335)
T ss_dssp ---CCCEEEEETTEEEEESSCCTTCBHHHHHHHTTCCTTSCCSCSSSSSCTTEEEEEEEETTTTEEEEEEEETTTCBGGG
T ss_pred CCCCCeEEEEECCEEEEeCCCCcCccHHHHHhccCCCcccccccCCCCCcceEEEEeeEeCCCCeEEEEEhhHHHHHHHH
Confidence 34556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCceeEEecCCCCCCCCcchHhHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCc
Q 003040 88 VNGCLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNL 167 (854)
Q Consensus 88 ~~g~~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnl 167 (854)
+||++|+||||||+.+++||||||+|+++|||||||||||||||||+||+|+ +.| |+++|+++|+|||
T Consensus 84 ~~g~~v~TvEglg~~~~~lHpvQ~~~a~~hgsQCGFCTPGfVMSmyall~~~-----~~p-------t~~~ie~al~GNL 151 (1335)
T 3zyv_A 84 LHGAAVTTVEGIGSTKTRIHPVQERIAKGHGTQCGFCTPGMVMSIYTLLRNH-----PEP-------STEQIMETLGGNL 151 (1335)
T ss_dssp CTTCEEECHHHHCCTTSCCCHHHHHHHHTTCCSSCTTHHHHHHHHHHHHHHC-----SSC-------CHHHHHHHHTTCC
T ss_pred hcCCEEEeeCCCCCCCCCCCHHHHHHHhcCCCcCCCCCcHHHHHHHHHHHcC-----CCC-------CHHHHHHHhCCcc
Confidence 9999999999999888899999999999999999999999999999999764 555 6999999999999
Q ss_pred cccCCChhHHHHHHHhhhcccccccC--CCcccccCCc----------ccccccCCCCCCCCCcccCCCcccccc----c
Q 003040 168 CRCTGYRPIADACKSFAADVDIEDLG--INSFWAKGES----------KEVKISRLPPYKHNGELCRFPLFLKKE----N 231 (854)
Q Consensus 168 CRCtgy~~i~~a~~~~~~~~~~~~~~--~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~p~~l~~~----~ 231 (854)
|||||||||+||+|+|+.+.++++.+ ..||...... +.....++++++++++ ++|||+|... .
T Consensus 152 CRCTGYRPIldA~ksfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~e-~ifppel~~~~~~~~ 230 (1335)
T 3zyv_A 152 CRCTGYRPIVESAKSFCPSSTCCQMNGEGKCCLDEEKNEPERKNSVCTKLYEKKEFQPLDPTQE-LIFPPELMRMAEESQ 230 (1335)
T ss_dssp CSSSCSHHHHHHHHTTCC-----------------------------CCSSCGGGSCCCCGGGS-CCCCHHHHHHHC--C
T ss_pred cccCCCHHHHHHHHHhhccCccccccCCCcccccccccCcccccccccccccccccCCCCcccc-ccCCHHHHhhhhccc
Confidence 99999999999999999887665542 1333222111 1123456788998875 5999998642 2
Q ss_pred CcceeecC-CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEe-ec-cccCceeeeCCCcccccceEecCCcEE
Q 003040 232 SSAMLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYY-KE-VEHYDKYIDIRYIPELSVIRRDQTGIE 308 (854)
Q Consensus 232 ~~~~~~~~-~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~-k~-~~~~~~lIdl~~I~EL~~I~~~~~~l~ 308 (854)
...+.+.+ +.+||+|.||+|+++|++ ++|+++||+|||+++++ +. ...++++||+++|+||+.|+.++++|+
T Consensus 231 ~~~l~~~g~~~~w~~P~tl~el~~l~~-----~~p~a~lvaGnT~~gl~~~~~~~~~~~~I~~~~v~EL~~i~~~~~~l~ 305 (1335)
T 3zyv_A 231 NTVLTFRGERTTWIAPGTLNDLLELKM-----KHPSAPLVIGNTYLGLHMKFTDVSYPIIISPARILELFVVTNTKQGLT 305 (1335)
T ss_dssp CCCEEEECSSCEEEECSSHHHHHHHHH-----HCTTSCBCSSCTTHHHHHC--CCCCSEEECCTTCGGGSCEECCTTEEE
T ss_pred cceeeecCCCceEecCCCHHHHHHHHH-----HCCCCeEEEecccceeeEeecCCCCCeEEEcCcchhHheEEecCCEEE
Confidence 34577777 889999999999999999 46999999999999995 32 267899999999999999999999999
Q ss_pred ecccccHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEE
Q 003040 309 IGATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIM 388 (854)
Q Consensus 309 IGA~vTl~~l~~~l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp~~~~sD~~~~LlAldA~v~l~ 388 (854)
|||+|||+++++.|++.+++++++.++.||.|.+++++|||+||||+||||||||++||+ ||++|+|+|+||+|+|.
T Consensus 306 IGA~vtls~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~fAs~qIRN~aTigGNI~~asPi---sD~~p~L~A~~A~l~l~ 382 (1335)
T 3zyv_A 306 LGTGLSLTQVKNVLSDVVSRLPKEKTQIYCALLKQLKTLAGQQIRNVASLGGHIISRLPT---SDLNPILGIGNCILNVA 382 (1335)
T ss_dssp EETTCBHHHHHHHHHHHHTTSCTTTCTTHHHHHHHHTTSSCHHHHHHCBHHHHHHTCCTT---CSSHHHHGGGTCEEEEE
T ss_pred EcccCcHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHhcchhhcCcccccCceeccCCc---chHHHHHHhhCCEEEEe
Confidence 999999999999999888888888889999999999999999999999999999999999 99999999999999999
Q ss_pred eCCeeEEEehhhhh-c---CCCCCCCceEEEEEcCCCCccCCcccCCCcceEEEEEEeccCCCCCccceeeeeEEEEEcC
Q 003040 389 TGQKCEKLMLEEFL-E---RPPLDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSP 464 (854)
Q Consensus 389 s~~g~R~vpl~dF~-~---~~~L~~~Eii~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~d~a~v~~A~~v~~~~ 464 (854)
+.+|.|+++++||| . +++|+++|||.+|+||.+.+ ..+|++||+++| +++|||+||+||++.+++
T Consensus 383 ~~~g~r~i~l~d~F~~gyrk~~l~~~eil~si~iP~~~~----------~~~~~~yK~s~R-~d~dia~Vnaa~~v~l~~ 451 (1335)
T 3zyv_A 383 STEGIQQIPLNDHFLAGVPDAILKPEQVLISVFVPRSSK----------WEFVSAFRQAPR-QQNAFATVNAGMKVVFKE 451 (1335)
T ss_dssp CSSCEEEEECCTTTSCC----CCCTTCEEEEEEEECCCT----------TEEEEEEEECSS-SSSSCCSEEEEEEEEC--
T ss_pred cCCceEEEechHhhhhcccccccCCCcEEEEeeccCCch----------hhhhhheeeccc-cccchhhheeeeeEEEec
Confidence 99999999998854 3 57899999999999999876 688999999999 799999999999999975
Q ss_pred CCCCCCceeeeeEEEEcccCCCcceeHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCCCCCC--CCHHHHhHHHHHHHHHH
Q 003040 465 CKTGDGIRVNNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGT--SIPAYRSSLAVGFLYEF 542 (854)
Q Consensus 465 ~~~~~~~~i~~~ria~Ggv~~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~~~~p~~d~--~s~eYRr~la~~L~~r~ 542 (854)
++++|+++||+||||+++ |+|+.++|++|+||+|+++++++|++.|.+++.|..+. +|++||+.||.+||+||
T Consensus 452 ----~~~~v~~~~iafGGma~~-~~rA~~te~~L~Gk~~~~~~l~~A~~~L~~e~~p~~~~~g~~~~YR~~la~~ll~kf 526 (1335)
T 3zyv_A 452 ----DTNTITDLGILYGGIGAT-VISADKSCRQLIGRCWDEEMLDDAGKMICEEVSLLMAAPGGMEEYRKTLAISFLFMF 526 (1335)
T ss_dssp ------CBCSEEEEEEESSSSS-CC---CTTGGGTTCBC---CHHHHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHHHH
T ss_pred ----CCCeEeEEEEEEecCcCc-cccHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCcCCCCccHHHHHHHHHHHHHHH
Confidence 247999999999999999 99999999999999999999999999999999887664 58999999999999999
Q ss_pred HHHHhhhhcCCCccccCCCCCCCCccccccccccccccccccccccCccccccccC----cCCcCCCCcccccccccccc
Q 003040 543 FGSLTEMKNGISRDWLCGYSNNVSLKDSHVQQNHKQFDESKVPTLLSSAEQVVQLS----REYYPVGEPITKSGAALQAS 618 (854)
Q Consensus 543 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~g~q~~~~~----~~~~~iGk~~~r~d~~~kvt 618 (854)
|+++.++++...+. ..+ +.+ +... +....+++++++|.|.|++. +.+++||||++|+|+..|||
T Consensus 527 ~l~~~~~~~~~~~~---~~~---~~~-----~~~~-~~~~~~~~~~~~~~q~~~~~~~~~~~~~~IGk~v~R~d~~~kvt 594 (1335)
T 3zyv_A 527 YLDVLKQLKTRDPH---KYP---DIS-----QKLL-HILEDFPLTMPYGMQSFQDVDFQQPLQDPIGRPIMHQSGIKHAT 594 (1335)
T ss_dssp HHHHHHHHHHHC------------CC-----HHHH-GGGCCCCCC---CCEECCCCCTTSCTTCCTTSCCCCTTHHHHHH
T ss_pred HHHHHHhhcccccc---cCC---Ccc-----hhhc-ccccccCCCCCCcccccccccccCCCCCCCCCCCcCcChHHHCC
Confidence 99998876431111 000 000 0111 13457889999999999764 45678999999999999999
Q ss_pred cceeccccCCCCCCcEEEEEEecCCCCceeccCCCCccCCCCCEEEEEEcCCCCCCCCCCCccccCCCcccccCCceeec
Q 003040 619 GEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNIGSKTIFGSEPLFADELTRCA 698 (854)
Q Consensus 619 G~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~~ID~s~A~~~PGVv~v~t~~Dip~~g~n~~~~~~~~d~p~~a~~~V~y~ 698 (854)
|+++|++|++.+|||||+++||||++||+|++||+++|+++|||++|+|++|+| +.|. ..++|+|++++|+|+
T Consensus 595 G~a~Y~~Di~~~pgmL~a~~vrSp~aharI~sID~s~A~~~pGV~aV~T~~DiP--~~~~-----~~~~~~la~d~Vr~~ 667 (1335)
T 3zyv_A 595 GEAVFCDDMSVLPGELFLAVVTSSKSHAKIISLDASEALASLGVVDVVTARDVP--GDNG-----REEESLYAQDEVICV 667 (1335)
T ss_dssp TCCCCSTTSCCCTTCEEEEEEECSSSSEEEEEEECHHHHHSTTEEEEECGGGCS--SCCC-------CCCSSCCSEECST
T ss_pred CcccccccCCCCCCCEEEEEEeCCCCCeEEEEEEhHHHhcCCCeEEEEehhhcC--CcCC-----CCCcccCCCCeEEEc
Confidence 999999999756999999999999999999999999999999999999999999 5553 368999999999999
Q ss_pred CCeEEEEEeCCHHHHHHhccccEEEEecCCCCCCcCCHHHHHhcCCCCcCCCcccCCCCCChhhhcccCCeeEEEEEEEE
Q 003040 699 GQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISKGMNEADHRILAAEIKL 778 (854)
Q Consensus 699 GqpIa~VvAet~~~A~~Aa~~V~V~y~~e~l~p~v~~~~~Al~~~~~~~~~~~~~~~~~Gd~~~a~~~a~~~vve~~~~~ 778 (854)
|||||+|||+|+++|++|+++|+|+| |+++|.+.++++|++.+++... . ...+.||++++|++|+++ ||++|++
T Consensus 668 Gq~VA~VvAet~~~A~~Aa~~V~VeY--e~l~P~v~~~~~a~~~~~~~~~-~--~~~~~Gd~~~af~~a~~v-ve~~y~~ 741 (1335)
T 3zyv_A 668 GQIVCAVAADSYAHAQQAAKKVKIVY--QDIEPMIVTVQDALQYESFIGP-E--RKLEQGNVEEAFQCADQI-LEGEVHL 741 (1335)
T ss_dssp TCEEEEEEESSHHHHHHHHTTCEEEE--EECSCCCCSHHHHHHTTCCEEE-E--EEEEESCHHHHTTSSSEE-EEEEEEE
T ss_pred CCEEEEEEECCHHHHHHHhcCCeEEE--EeCCCccCCHHHHhhcccccCc-c--ccccCCCHHHHHhhCCeE-EEEEEEE
Confidence 99999999999999999999999999 8885678999999998765321 1 135789999999999995 9999999
Q ss_pred CccccCCCCCCeEEEEEC-CCCcEEEEeCCCChHHHHHHHHHHhCCCCCCEEEEeCCcCCCCCCCCCCcHHHH
Q 003040 779 GSQYYFYMETQTALAVPD-EDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGGKAIKAMPVS 850 (854)
Q Consensus 779 ~~q~H~~mEp~~a~A~~~-~dg~l~V~~stQ~p~~~~~~vA~~Lglp~~kV~V~~~~~GGgFGgK~~~~~~~a 850 (854)
++|+|+||||++++|+|+ +||+|+||+|||+|+.+|..+|++||||++||||+++++|||||+|.+...+++
T Consensus 742 ~~~~h~~mEp~~~~a~~~~edg~l~v~~sTQ~p~~~r~~lA~~Lglp~~kVrV~~~~vGGGFG~K~~~~~~~~ 814 (1335)
T 3zyv_A 742 GGQEHFYMETQSVRVVPKGEDKEMDIYVSSQDAAFTQEMVARTLGIPKNRINCHVKRVGGAFGGKASKPGLLA 814 (1335)
T ss_dssp CCBCCCCSSCCEEEEEECSSTTCEEEEECCSCHHHHHHHHHHHHTCCGGGEEEEESCCSCCTTTTSSHHHHHH
T ss_pred CceeccccCCcceEEEEECCCCeEEEEECCcCHHHHHHHHHHHHCCCCceEEEEeCCccCCCCccccCchHHH
Confidence 999999999999999998 567899999999999999999999999999999999999999999998765544
No 2
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A*
Probab=100.00 E-value=1.7e-170 Score=1599.89 Aligned_cols=776 Identities=31% Similarity=0.539 Sum_probs=680.7
Q ss_pred EEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccCce
Q 003040 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCL 92 (854)
Q Consensus 13 ~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g~~ 92 (854)
.|+|+|||+++++.+++|+++||+|||+++||||||.||++|+||||||+|+++|+.++++++++|||||+|+++++|++
T Consensus 5 ~i~~~vNg~~~~~~~~~p~~~ll~~LR~~~~ltgtk~gC~~g~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~ 84 (1332)
T 3unc_A 5 ELVFFVNGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLSKYDRLQDKIIHFSANACLAPICTLHHVA 84 (1332)
T ss_dssp CEEEEETTEEEEETTCCTTCBHHHHHHHTSCCTTSCCSCSSSSSCTTEEEEEEEETTTTEEEEEEEETTTCBGGGCTTCE
T ss_pred cEEEEECCEEEEeecCCCCCCHHHHHhhhcCCCCcCCCcCCCCCCCcEEEEecccccccccCCeEeehHHhhHHHhCCCE
Confidence 69999999999986699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCCCCCcchHhHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCccccCC
Q 003040 93 ITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTG 172 (854)
Q Consensus 93 i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRCtg 172 (854)
|+|||||++.++.||||||||+++|++|||||||||||++|+||+++ |.| |++||+++|+||||||||
T Consensus 85 i~TiEgl~~~~~~~hpvq~a~~~~~~~QCG~CtpG~vms~~~ll~~~-----~~p-------~~~~i~~~l~gnlCRCtg 152 (1332)
T 3unc_A 85 VTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGIVMSMYTLLRNQ-----PEP-------TVEEIEDAFQGNLCRCTG 152 (1332)
T ss_dssp EECGGGTCCTTSCCCHHHHHHHHTTCCSSCTTHHHHHHHHHHHHHHC-----SSC-------CHHHHHHTTTTCCCSSSC
T ss_pred EEEeccccCCCCCcCHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhc-----CCC-------CHHHHHHHHhCCcccCCC
Confidence 99999999755689999999999999999999999999999999654 555 699999999999999999
Q ss_pred ChhHHHHHHHhhhccccc---ccCCCcccccCCcc-------cccccCCCCCCCCCcccCCCcccc---cccCcceeecC
Q 003040 173 YRPIADACKSFAADVDIE---DLGINSFWAKGESK-------EVKISRLPPYKHNGELCRFPLFLK---KENSSAMLLDV 239 (854)
Q Consensus 173 y~~i~~a~~~~~~~~~~~---~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~p~~l~---~~~~~~~~~~~ 239 (854)
|++|++|++.++.+.++| +.|.+||+++.+.+ -+..++|++|+++++ +||||+|+ .....++.+.+
T Consensus 153 y~~i~~a~~~~~~~~~~c~~~~~g~~cc~~~~~~~~~~~~~~~~~~~~~~~~d~~~e-~ifpp~L~~~~~~~~~~l~~~~ 231 (1332)
T 3unc_A 153 YRPILQGFRTFAKNGGCCGGNGNNPNCCMNQKKDHTVTLSPSLFNPEEFMPLDPTQE-PIFPPELLRLKDVPPKQLRFEG 231 (1332)
T ss_dssp SHHHHHHHGGGC----------------------------CCSCCGGGSCCCCGGGS-CCCCHHHHHHTTSCCCCEEEEC
T ss_pred chhHHHHHHHHhhcCCcccccccCCccccccccccccccccccccccccCCCCcccc-ccCCHHHhhhccccCCceEecC
Confidence 999999999999876554 23456776543221 124566889999864 59999997 23445677877
Q ss_pred -CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceE-eecc-ccCceeeeCCCcccccceEecCCcEEecccccHH
Q 003040 240 -KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGY-YKEV-EHYDKYIDIRYIPELSVIRRDQTGIEIGATVTIS 316 (854)
Q Consensus 240 -~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~-~k~~-~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~ 316 (854)
.++||+|+||+||++||++ ++++++|||||+|++ +|.+ ..++++|||++|+||+.|+.++++|+|||+|||+
T Consensus 232 ~~~~~~~P~sl~ea~~ll~~-----~~~a~lvaGgT~l~~~~k~~~~~~~~lIdl~~i~EL~~I~~~~~~l~IGA~vtl~ 306 (1332)
T 3unc_A 232 ERVTWIQASTLKELLDLKAQ-----HPEAKLVVGNTEIGIEMKFKNQLFPMIICPAWIPELNAVEHGPEGISFGAACALS 306 (1332)
T ss_dssp SSCEEEECCSHHHHHHHHHH-----CTTCEECSSCTTHHHHHHHSCCCCSEEEECTTCGGGGCEEECSSEEEEETTCBHH
T ss_pred CceEEEccCCHHHHHHHHhh-----CCCCEEEEeCcHHHHHhhcCCCCCCeEEEcCCCHHhCceEEeCCEEEEEecChHH
Confidence 8999999999999999994 589999999999999 4544 6799999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCeeEEE
Q 003040 317 KAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKL 396 (854)
Q Consensus 317 ~l~~~l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp~~~~sD~~~~LlAldA~v~l~s~~g~R~v 396 (854)
+|++.+++.+.+++.+..+.+|.|++++++|||+||||+||||||||+++|. ||++|+|+||||+|+|.+.+|+|+|
T Consensus 307 ~l~~~l~~~~~~~~~~~~~~~p~L~~a~~~ias~qIRN~aTiGGNI~~asp~---sD~~~~LlAl~A~v~l~~~~G~R~i 383 (1332)
T 3unc_A 307 SVEKTLLEAVAKLPTQKTEVFRGVLEQLRWFAGKQVKSVASLGGNIITASPI---SDLNPVFMASGTKLTIVSRGTRRTV 383 (1332)
T ss_dssp HHHHHHHHHHHHSCGGGCHHHHHHHHHHHTSSCHHHHHHCBHHHHHHHCCTT---CSSHHHHHHTTCEEEEEETTEEEEE
T ss_pred HHHHHHHHHhhhccccccchhHHHHHHHHHhCCHHHhceeeccceecccCCc---hhHHHHHHHcCCEEEEEeCCCcEEE
Confidence 9999887776666666778899999999999999999999999999999998 9999999999999999999999999
Q ss_pred ehhh-hhc---CCCCCCCceEEEEEcCCCCccCCcccCCCcceEEEEEEeccCCCCCccceeeeeEEEEEcCCCCCCCce
Q 003040 397 MLEE-FLE---RPPLDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIR 472 (854)
Q Consensus 397 pl~d-F~~---~~~L~~~Eii~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~d~a~v~~A~~v~~~~~~~~~~~~ 472 (854)
|++| ||. ++.|.++|||++|+||.+.. +.++.+||+++| +++|||+||+|+++++++ ++++
T Consensus 384 pl~d~Ff~g~~~t~L~~~Eil~~I~iP~~~~----------~~~~~~~K~~~R-~~~d~A~V~~A~~v~~~~----~~~~ 448 (1332)
T 3unc_A 384 PMDHTFFPSYRKTLLGPEEILLSIEIPYSRE----------DEFFSAFKQASR-REDDIAKVTCGMRVLFQP----GSMQ 448 (1332)
T ss_dssp ECCGGGCCSTTCCSCCTTCEEEEEEEECCCT----------TEEEEEEEECSS-SSSCCCSEEEEEEEEEST----TSSB
T ss_pred EhHHhhhhccccccCCCCcEEEEEEecCCCC----------CcceEEEEEecC-CCCCcceEEEEEEEEEcC----CCCe
Confidence 9999 997 57899999999999998865 467889999999 799999999999999974 1379
Q ss_pred eeeeEEEEcccCCCcceeHHHHHHHHcCCCCCHHHHHHHHHHHhhcCC-CCCCC-CCHHHHhHHHHHHHHHHHHHHhhhh
Q 003040 473 VNNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVV-PEDGT-SIPAYRSSLAVGFLYEFFGSLTEMK 550 (854)
Q Consensus 473 i~~~ria~Ggv~~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~~~~-p~~d~-~s~eYRr~la~~L~~r~l~~~~~~~ 550 (854)
|+++||+||||+++ |+|++++|++|+||+|+++++++|++.+.+++. |.++. +|++||++|+.+||+|||+++.+++
T Consensus 449 i~~~rIa~Ggva~~-p~ra~~~E~~L~Gk~~~~~~l~~A~~~l~~~~~~~~~d~~gs~eYR~~La~~ll~r~l~~v~~~~ 527 (1332)
T 3unc_A 449 VKELALCYGGMADR-TISALKTTQKQLSKFWNEKLLQDVCAGLAEELSLSPDAPGGMIEFRRTLTLSFFFKFYLTVLKKL 527 (1332)
T ss_dssp EEEEEEEEESSSSS-CEECHHHHHTTTTCBSSHHHHHHHHHHHHHHTCCCTTCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEECCCCc-cccHHHHHHHhcCCCCcHHHHHHHHHHHHhhCCCCcccccCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999 999999999999999999999999999999996 56665 6999999999999999999999987
Q ss_pred cCCCccccCCCCCCCCccccccccccccccccccccccCccccccc----cCcCCcCCCCcccccccccccccceecccc
Q 003040 551 NGISRDWLCGYSNNVSLKDSHVQQNHKQFDESKVPTLLSSAEQVVQ----LSREYYPVGEPITKSGAALQASGEAIYVDD 626 (854)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~g~q~~~----~~~~~~~iGk~~~r~d~~~kvtG~a~Y~~D 626 (854)
+.. +.. +...+++ ... ++...++||+|+|.|.|+ +.+++++|||+++|+|+..||||+++|++|
T Consensus 528 ~~~-~~~--~~~~~~~--------~~~-s~~~~~~~~~~~g~q~~~~~~~~~~~~~~iG~~v~R~d~~~kvtG~a~Y~~D 595 (1332)
T 3unc_A 528 GKD-SKD--KCGKLDP--------TYT-SATLLFQKDPPANIQLFQEVPNGQSKEDTVGRPLPHLAAAMQASGEAVYCDD 595 (1332)
T ss_dssp CC-----------CCT--------TTG-GGGCCCCCCCCEEEEECCCCCTTCCTTCCTTSCCCCTTHHHHHHTCSCCGGG
T ss_pred ccc-ccc--ccCCCCh--------hhc-cccccccCCCCCceeeeecccccccccCcCCCCCcCcchHHhcccccccccc
Confidence 431 000 0001111 111 135678999999999998 467889999999999999999999999999
Q ss_pred CCCCCCcEEEEEEecCCCCceeccCCCCccCCCCCEEEEEEcCCCCCCCCCCCccccCCCcccccCCceeecCCeEEEEE
Q 003040 627 IPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNIGSKTIFGSEPLFADELTRCAGQPVAFVV 706 (854)
Q Consensus 627 i~~~~gmL~a~~vrSp~a~a~I~~ID~s~A~~~PGVv~v~t~~Dip~~g~n~~~~~~~~d~p~~a~~~V~y~GqpIa~Vv 706 (854)
++.+|||||+++||||++||+|++||+++|++||||++|+|++|+| +.|.. . ...|+|+|++++|+|+||||++||
T Consensus 596 i~~~pgmL~a~~vrSp~aha~I~sID~s~A~~~pGV~~V~t~~Dip--~~~~~-g-~~~d~~~la~~~Vry~GqpVa~Vv 671 (1332)
T 3unc_A 596 IPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPGFVCFLSADDIP--GSNET-G-LFNDETVFAKDTVTCVGHIIGAVV 671 (1332)
T ss_dssp SCCBTTCEEEEEEECSSSSEEEEEEECTTGGGSTTEEEEECGGGCS--SCSEE-S-TTSCEESSCCSEECSTTCEEEEEE
T ss_pred cCCCCCcEEEEEEeCCCCCeeEeeechHHHhcCCCEEEEEeccccC--CcccC-C-CCCCcccccCceEEEcCCeEEEEE
Confidence 9745899999999999999999999999999999999999999999 55531 1 346899999999999999999999
Q ss_pred eCCHHHHHHhccccEEEEecCCCCCCcCCHHHHHhcCCCCcCCCcccCCCCCChhhhcccCCeeEEEEEEEECccccCCC
Q 003040 707 ADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISKGMNEADHRILAAEIKLGSQYYFYM 786 (854)
Q Consensus 707 Aet~~~A~~Aa~~V~V~y~~e~l~p~v~~~~~Al~~~~~~~~~~~~~~~~~Gd~~~a~~~a~~~vve~~~~~~~q~H~~m 786 (854)
|+|+|+|++|+++|+|+| |++ |+++|+++|+++++++.. . .....||++++|++|+++ ||++|++++|+|+||
T Consensus 672 A~t~~~A~~Aa~~v~Vey--e~l-p~v~~~~~A~~~~~~~~~-~--~~~~~Gd~~~afa~A~~v-ve~~y~~~~~~H~~m 744 (1332)
T 3unc_A 672 ADTPEHAERAAHVVKVTY--EDL-PAIITIEDAIKNNSFYGS-E--LKIEKGDLKKGFSEADNV-VSGELYIGGQDHFYL 744 (1332)
T ss_dssp ESSHHHHHHHHHTCEEEE--EEC-CCCCSHHHHHHTTCEEEE-E--EEEEESCHHHHHHHCSEE-EEEEEEECCBCCCCS
T ss_pred ECCHHHHHHHhhcCceEE--EcC-CCcCCHHHHhhccCccCC-c--cccccCCHhHHhhcCCeE-eeeeEEeCCccccCC
Confidence 999999999999999999 888 899999999998764321 1 135789999999999995 999999999999999
Q ss_pred CCCeEEEEEC-CCCcEEEEeCCCChHHHHHHHHHHhCCCCCCEEEEeCCcCCCCCCCCCCcHH
Q 003040 787 ETQTALAVPD-EDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGGKAIKAMP 848 (854)
Q Consensus 787 Ep~~a~A~~~-~dg~l~V~~stQ~p~~~~~~vA~~Lglp~~kV~V~~~~~GGgFGgK~~~~~~ 848 (854)
||++++|+|+ +||+|+||+|||+|+.+|..||++||||++||||+++++|||||+|.+....
T Consensus 745 Ep~~~~A~~~~~~g~l~v~~sTQ~p~~~r~~vA~~Lglp~~kVrV~~~~vGGgFG~K~~~~~~ 807 (1332)
T 3unc_A 745 ETHCTIAIPKGEEGEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGGKETRSTL 807 (1332)
T ss_dssp SCCEEEEEECSSTTCEEEEECCSCHHHHHHHHHHHHTCCGGGEEEEECCCSCCTTTTSSTTHH
T ss_pred CCceEEEEEeCCCCeEEEEECCCCHHHHHHHHHHHhCCCchhEEEEeCCCCCCCCCCCcccch
Confidence 9999999998 6779999999999999999999999999999999999999999999987643
No 3
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*
Probab=100.00 E-value=5.1e-105 Score=911.33 Aligned_cols=444 Identities=27% Similarity=0.449 Sum_probs=393.3
Q ss_pred eEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccCc
Q 003040 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGC 91 (854)
Q Consensus 12 ~~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g~ 91 (854)
|+|+|+|||+.+++++++|+++|||||| +++|||||.||++|+||||||+|+++| ||+++|||++|+.+++|+
T Consensus 1 ~~~~~~vNg~~~~~~~~~~~~~Ll~~Lr-~~~l~g~k~gC~~G~CGaCtV~v~~~~------~g~~v~sCl~~~~~~~g~ 73 (462)
T 2w3s_A 1 MEIAFLLNGETRRVRIEDPTQSLLEWLR-AEGLTGTKEGCNEGDCGACTVMIRDAA------GSRAVNACLMMLPQIAGK 73 (462)
T ss_dssp CEEEEEETTEEEEEECSCTTCBHHHHHH-HTTCTTSCCSCSSSSSCTTEEEEEETT------EEEEEETTTCBGGGGTTC
T ss_pred CcEEEEECCEEEEEecCCCCCcHHHHHH-HcCCCccCCCCCCCCcCCcEEEEEecC------CCeEEEchhhhHHHhCCC
Confidence 5799999999999955899999999999 999999999999999999999999887 689999999999999999
Q ss_pred eeEEecCCCCCCCCcchHhHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCccccC
Q 003040 92 LITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCT 171 (854)
Q Consensus 92 ~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRCt 171 (854)
+|+|||||++.++.+||||++|+++|++|||||||||||++++|| + | |++||+++|+|||||||
T Consensus 74 ~i~TiEgl~~~~~~~~~~q~a~~~~~~~QCG~CtpG~im~~~~ll-~--------p-------~~~~i~~~l~gnlCRCt 137 (462)
T 2w3s_A 74 ALRTIEGIAAPDGRLHPVQQAMIDHHGSQCGFCTPGFIVSMAAAH-D--------R-------DRKDYDDLLAGNLCRCT 137 (462)
T ss_dssp EEECGGGTSCTTSCCCHHHHHHHHTTCCSSCTTHHHHHHHHHHHH-H--------T-------TCCCHHHHSTTCCCSSS
T ss_pred cEEEECCCCCCCCCCCHHHHHHHHhCCCCCCCCcchHHHHHHHHH-C--------C-------CHHHHHHHHcCCcccCC
Confidence 999999998645789999999999999999999999999999999 2 2 57899999999999999
Q ss_pred CChhHHHHHHHhhhcccccccCCCcccccCCcccccccCCCCCCCCCcccCCCcccccccCcceee--cC-CceEEecCC
Q 003040 172 GYRPIADACKSFAADVDIEDLGINSFWAKGESKEVKISRLPPYKHNGELCRFPLFLKKENSSAMLL--DV-KGSWHSPIS 248 (854)
Q Consensus 172 gy~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~--~~-~~~~~~P~s 248 (854)
||++|++|++.++.....+++ ..+..+ + ...+.+ .+ ..+|++|+|
T Consensus 138 gy~~i~~a~~~~~~~~~~~~~-------------~~~~~~------~-------------~~~~~~~~gG~a~~y~~P~s 185 (462)
T 2w3s_A 138 GYAPILRAAEAAAGEPPADWL-------------QADAAF------T-------------LAQLSSGVRGQTAPAFLPET 185 (462)
T ss_dssp CSHHHHHHHHHHHTSCCCHHH-------------HHGGGC------C--------------------------CCBCCSS
T ss_pred CcHHHHHHHHHHhhccccccc-------------cCcccc------c-------------ccceeEcCCCCccEEEecCC
Confidence 999999999998731100000 000000 0 011222 13 358999999
Q ss_pred HHHHHHHHhhhcCCCCCcceEEccCccceE-eecc-ccCceeeeCCCcccccceEecCCcEEecccccHHHHHHHHHHHh
Q 003040 249 VQELRNVLESVEGSNQISSKLVAGNTGMGY-YKEV-EHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEALKEET 326 (854)
Q Consensus 249 l~eal~ll~~~~~~~~~~a~lvaGgT~l~~-~k~~-~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~l~~~~ 326 (854)
++||++++++ ++++++|+|||+|++ +|.+ ..++++|||++|+||+.|+.++++|+|||++|+++|++.++
T Consensus 186 l~ea~~ll~~-----~~~a~ilaGGT~L~~~~k~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vtl~~l~~~l~--- 257 (462)
T 2w3s_A 186 SDALADWYLA-----HPEATLIAGGTDVSLWVTKALRDLPEVAFLSHCKDLAQIRETPDGYGIGAGVTIAALRAFAE--- 257 (462)
T ss_dssp HHHHHHHHHH-----CTTCEEESSCTTTTHHHHTSCCCCCSEEECTTCGGGSCEEEETTEEEEETTCBHHHHHHHHT---
T ss_pred HHHHHHHHhh-----CCCCEEEeCCchhhhhhhccCCCCCEEEEcCCChhhCcEEEcCCEEEEccCCcHHHHHHHHH---
Confidence 9999999994 578999999999999 5554 57999999999999999999999999999999999998743
Q ss_pred hhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCeeEEEehhhhhc---
Q 003040 327 KEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEEFLE--- 403 (854)
Q Consensus 327 ~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp~~~~sD~~~~LlAldA~v~l~s~~g~R~vpl~dF~~--- 403 (854)
+.+|.|+++++++||+||||+|||||||++++|. ||++++|+||||+|+|.+.+|.|++|++|||.
T Consensus 258 --------~~~p~L~~a~~~ia~~qIRN~gTvGGNl~~~sp~---sD~~~~L~ALdA~v~l~~~~G~R~vp~~dF~~g~~ 326 (462)
T 2w3s_A 258 --------GPHPALAGLLRRFASEQVRQVATIGGNIANGSPI---GDGPPALIAMGASLTLRRGQERRRMPLEDFFLEYR 326 (462)
T ss_dssp --------TTCHHHHHHHTTSSCHHHHTTCBHHHHHHHTCTT---CSHHHHHHHTTCEEEEEBTTBCCCCBGGGGEEETT
T ss_pred --------HHhHHHHHHHHHhCChhheeeEEcccccccCCCc---chHHHHHHHcCCEEEEEeCCceEEEEHHHhhcccc
Confidence 2589999999999999999999999999999998 99999999999999999999999999999997
Q ss_pred CCCCCCCceEEEEEcCCCCccCCcccCCCcceEEEEEEeccCCCCCccceeeeeEEEEEcCCCCCCCceeeeeEEEEccc
Q 003040 404 RPPLDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAFGAF 483 (854)
Q Consensus 404 ~~~L~~~Eii~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~d~a~v~~A~~v~~~~~~~~~~~~i~~~ria~Ggv 483 (854)
++.|+++|||++|+||.+.. + +.+||+++| +++|||+||+|+.++++ +++|+++||+||||
T Consensus 327 ~t~L~~~Eii~~i~iP~~~~----------~--~~~~K~~~R-~~~d~a~v~~A~~~~~~------~~~i~~~ria~Ggv 387 (462)
T 2w3s_A 327 KQDRRPGEFVESVTLPKSAP----------G--LRCYKLSKR-FDQDISAVCGCLNLTLK------GSKIETARIAFGGM 387 (462)
T ss_dssp EESCCTTCEEEEEEEESCCS----------S--EEEEEECSS-SSSCCCSEEEEEEEEEE------TTEEEEEEEEEESS
T ss_pred cccCCCCcEEEEEEEecCCC----------C--ceEEEEccc-cccchhheeEEEEEEEc------CCeEEEEEEEEEcC
Confidence 46899999999999998764 3 678999999 79999999999999997 36999999999999
Q ss_pred CCCcceeHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCCCCCC-CCHHHHhHHHHHHHHHHHHHHhhh
Q 003040 484 GTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGT-SIPAYRSSLAVGFLYEFFGSLTEM 549 (854)
Q Consensus 484 ~~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~~~~p~~d~-~s~eYRr~la~~L~~r~l~~~~~~ 549 (854)
+++ |+|++++|++|.||+|+++++++|++.+.+++.|.+|. +|++||++|+++|++|+|.++..+
T Consensus 388 a~~-p~ra~~~E~~L~G~~~~~~~~~~a~~~~~~~~~p~~d~rgs~~YR~~la~~l~~r~l~~~~~~ 453 (462)
T 2w3s_A 388 AGV-PKRAAAFEAALIGQDFREDTIAAALPLLAQDFTPLSDMRASAAYRMNAAQAMALRYVRELSGE 453 (462)
T ss_dssp SSS-CEECHHHHHTTTTSBCSHHHHHHHGGGHHHHCCCCCBTTBCHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCc-ceEhHHHHHHhcCCCCCHHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHhhcc
Confidence 999 99999999999999999999999999999999999987 599999999999999999988654
No 4
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Probab=100.00 E-value=1.3e-89 Score=842.03 Aligned_cols=413 Identities=26% Similarity=0.389 Sum_probs=357.4
Q ss_pred eEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhc-cC
Q 003040 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSV-NG 90 (854)
Q Consensus 12 ~~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~-~g 90 (854)
++|+|+|||+.++++ ++|+++|||+||++++|||||.||++|.||||||+| ||++++||++|+.++ +|
T Consensus 2 ~~~~~~~ng~~~~~~-~~~~~~ll~~Lr~~~~l~g~k~gC~~g~CGaCtv~v----------dg~~~~sC~~~~~~~~~g 70 (907)
T 1vlb_A 2 IQKVITVNGIEQNLF-VDAEALLSDVLRQQLGLTGVKVGCEQGQCGACSVIL----------DGKVVRACVTKMKRVADG 70 (907)
T ss_dssp EEEEEEETTEEEEEE-ECTTSBHHHHHHHTTCCTTSCCSSSSSSSCTTEEEE----------TTEEEEGGGCBGGGSCTT
T ss_pred ceEEEEECCEEEEEe-cCCCChHHHHHHHhcCCCeecCCCCCCCcCccEEEE----------CCeEeechHhHHHHHcCC
Confidence 369999999999997 899999999999999999999999999999999999 799999999999999 99
Q ss_pred ceeEEecCCCCCCCCcchHhHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHh--CCcc
Q 003040 91 CLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIA--GNLC 168 (854)
Q Consensus 91 ~~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~--gnlC 168 (854)
++|+|||||++ .+.+||+|+||+++|++|||||||||||++++||++ +|+| |++||+++|+ ||||
T Consensus 71 ~~i~Tiegl~~-~~~~~~~q~a~~~~~~~qCG~c~pg~~~~~~~ll~~-----~~~p-------~~~~i~~~~~~~gn~c 137 (907)
T 1vlb_A 71 AQITTIEGVGQ-PENLHPLQKAWVLHGGAQCGFCSPGFIVSAKGLLDT-----NADP-------SREDVRDWFQKHRNAC 137 (907)
T ss_dssp CEEECHHHHCB-TTBCCHHHHHHHHHTCCSSCTTHHHHHHHHHHHHTT-----CSSC-------CHHHHHHHHHHTTCCC
T ss_pred CcEEEECCCCC-CcCcCHHHHHHHHcCCCCCCcChHHHHHHHHHHHHc-----CCCC-------CHHHHHHHHHhcCCCc
Confidence 99999999986 578999999999999999999999999999999943 4666 6999999999 9999
Q ss_pred ccCCChhHHHHHHHhhhcccccccCCCcccccCCcccccccCCCCCCCCCcccCCCcccccccCcceeecCCceEEecCC
Q 003040 169 RCTGYRPIADACKSFAADVDIEDLGINSFWAKGESKEVKISRLPPYKHNGELCRFPLFLKKENSSAMLLDVKGSWHSPIS 248 (854)
Q Consensus 169 RCtgy~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~P~s 248 (854)
|||||++|++|++.++..
T Consensus 138 RctgY~~i~~a~~~aa~~-------------------------------------------------------------- 155 (907)
T 1vlb_A 138 RCTGYKPLVDAVMDAAAV-------------------------------------------------------------- 155 (907)
T ss_dssp SSSCSHHHHHHHHHHHHH--------------------------------------------------------------
T ss_pred cccchHHHHHHHHHHHHh--------------------------------------------------------------
Confidence 999999999999864310
Q ss_pred HHHHHHHHhhhcCCCCCcceEEccCccceEeeccccCceeeeCCCcccccceEecCCcEEecccccHHHHHHHHHHHhhh
Q 003040 249 VQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEALKEETKE 328 (854)
Q Consensus 249 l~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~l~~~~~~ 328 (854)
+. .
T Consensus 156 -------~~------~---------------------------------------------------------------- 158 (907)
T 1vlb_A 156 -------IN------G---------------------------------------------------------------- 158 (907)
T ss_dssp -------HT------T----------------------------------------------------------------
T ss_pred -------hc------c----------------------------------------------------------------
Confidence 00 0
Q ss_pred hhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCeeEEEehhhhhcCCCCC
Q 003040 329 FHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEEFLERPPLD 408 (854)
Q Consensus 329 ~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp~~~~sD~~~~LlAldA~v~l~s~~g~R~vpl~dF~~~~~L~ 408 (854)
+ .
T Consensus 159 --------------------------------------~----~------------------------------------ 160 (907)
T 1vlb_A 159 --------------------------------------K----K------------------------------------ 160 (907)
T ss_dssp --------------------------------------S----S------------------------------------
T ss_pred --------------------------------------C----C------------------------------------
Confidence 0 0
Q ss_pred CCceEEEEEcCCCCccCCcccCCCcceEEEEEEeccCCCCCccceeeeeEEEEEcCCCCCCCceeeeeEEEEcccCCCcc
Q 003040 409 SRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAFGAFGTKHA 488 (854)
Q Consensus 409 ~~Eii~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~d~a~v~~A~~v~~~~~~~~~~~~i~~~ria~Ggv~~~~p 488 (854)
++. . . +
T Consensus 161 ------------~~~----------~---------------------------------------------------~-~ 166 (907)
T 1vlb_A 161 ------------PET----------D---------------------------------------------------L-E 166 (907)
T ss_dssp ------------CGG----------G---------------------------------------------------G-S
T ss_pred ------------ccc----------c---------------------------------------------------c-c
Confidence 000 0 0 0
Q ss_pred eeHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCCCCCCCCHHHHhHHHHHHHHHHHHHHhhhhcCCCccccCCCCCCCCcc
Q 003040 489 IRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGTSIPAYRSSLAVGFLYEFFGSLTEMKNGISRDWLCGYSNNVSLK 568 (854)
Q Consensus 489 ~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~~~~p~~d~~s~eYRr~la~~L~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (854)
++
T Consensus 167 -------------------------------------------------------------~k----------------- 168 (907)
T 1vlb_A 167 -------------------------------------------------------------FK----------------- 168 (907)
T ss_dssp -------------------------------------------------------------CC-----------------
T ss_pred -------------------------------------------------------------cc-----------------
Confidence 00
Q ss_pred ccccccccccccccccccccCccccccccCcCCcCCCCcccccccccccccceeccccCC--CCCCcEEEEEEecCCCCc
Q 003040 569 DSHVQQNHKQFDESKVPTLLSSAEQVVQLSREYYPVGEPITKSGAALQASGEAIYVDDIP--SPINCLYGAFIYSTKPLA 646 (854)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~s~g~q~~~~~~~~~~iGk~~~r~d~~~kvtG~a~Y~~Di~--~~~gmL~a~~vrSp~a~a 646 (854)
.+.++++|||+++|+|+..||||+++|++|++ .+|||||+++||||++||
T Consensus 169 ----------------------------~p~~~~~iG~~~~R~d~~~kvtG~a~Y~~D~~~~~~~gmL~a~~vrSp~aha 220 (907)
T 1vlb_A 169 ----------------------------MPADGRIWGSKYPRPTAVAKVTGTLDYGADLGLKMPAGTLHLAMVQAKVSHA 220 (907)
T ss_dssp ----------------------------CCSSCCCTTSCCCCTTHHHHHTTCSCCHHHHHHTSCTTCEEEEEEECSSSSE
T ss_pred ----------------------------CccccccCCCcCccccchhhcCCceeeecccCcCCCCCCeEEEEEecCCCCe
Confidence 00122568999999999999999999999992 389999999999999999
Q ss_pred eeccCCCCccCCCCCEEEEEEcCCCCCCCCCCCcc------ccCCCcccccCCceeecCCeEEEEEeCCHHHHHHhcccc
Q 003040 647 RIKGIEFKSESVPDVVTALLSYKDIPEGGQNIGSK------TIFGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVA 720 (854)
Q Consensus 647 ~I~~ID~s~A~~~PGVv~v~t~~Dip~~g~n~~~~------~~~~d~p~~a~~~V~y~GqpIa~VvAet~~~A~~Aa~~V 720 (854)
+|++||+++|+++|||++|+|++|+|......+.. ....++|+|++++|+|+||||++|||+|+|+|++|+++|
T Consensus 221 rI~sID~s~A~~~pGV~~V~t~~D~p~~~~~~g~~~~~~~~~~~~~~~~la~~~Vr~~Gq~VA~VvA~t~~~A~~Aa~~v 300 (907)
T 1vlb_A 221 NIKGIDTSEALTMPGVHSVITHKDVKGKNRITGLITFPTNKGDGWDRPILCDEKVFQYGDCIALVCADSEANARAAAEKV 300 (907)
T ss_dssp EEEEEECHHHHTSTTEEEEECGGGCCSCSEECCSSCCTTCSSCSCCEESSCSSEECSTTCEEEEEEESSHHHHHHHHTTC
T ss_pred EEEEechhHHhcCCCeEEEEEcccCcccccccCccccccccccCCCchhccCCeEEEcCCeEEEEEECCHHHHHHHhcce
Confidence 99999999999999999999999998311111110 023588999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCcCCHHHHHhcCCC--CcCCCcc---cCCCCCChhhhc-ccCCeeEEEEEEEECccccCCCCCCeEEEE
Q 003040 721 VVDYEMGNLEPPILSVEEAVDRSSL--FEVPSFL---YPKPVGDISKGM-NEADHRILAAEIKLGSQYYFYMETQTALAV 794 (854)
Q Consensus 721 ~V~y~~e~l~p~v~~~~~Al~~~~~--~~~~~~~---~~~~~Gd~~~a~-~~a~~~vve~~~~~~~q~H~~mEp~~a~A~ 794 (854)
+|+| |++ |+++|+++|++++++ |+..+|+ .....||++++| ++|+++ ||++|++++|+|+||||++++|+
T Consensus 301 ~Vey--e~l-p~v~~~~~Al~~~a~~i~~~~~n~~~~~~~~~Gd~~~af~a~A~~v-ve~~y~~~~~~h~~mEp~~~~A~ 376 (907)
T 1vlb_A 301 KVDL--EEL-PAYMSGPAAAAEDAIEIHPGTPNVYFEQPIVKGEDTGPIFASADVT-VEGDFYVGRQPHMPIEPDVAFAY 376 (907)
T ss_dssp EEEE--EEC-CCCCSHHHHHSTTCCCSSTTSCSEEEEEEEEESSCHHHHHHHCSEE-EEEEEEECCCCCCCSSCCEEEEE
T ss_pred EEEE--EcC-CCCCCHHHHHhhcCccccccccccccccccccCChhhhhcccCCeE-EEEEEEECCccccCCCCCeEEEE
Confidence 9999 888 899999999998874 3321232 224689999999 999985 99999999999999999999999
Q ss_pred ECCCCcEEEEeCCCChHHHHHHHHHHhCCCCCCEEEEeCCcCCCCCCCCCCcHHH
Q 003040 795 PDEDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGGKAIKAMPV 849 (854)
Q Consensus 795 ~~~dg~l~V~~stQ~p~~~~~~vA~~Lglp~~kV~V~~~~~GGgFGgK~~~~~~~ 849 (854)
|++||+|+||+|||+|+.+|..+|++||||++||||+++++|||||+|.+....+
T Consensus 377 ~~~~g~l~v~~stQ~p~~~r~~lA~~Lglp~~~VrV~~~~vGGgFG~K~~~~~~~ 431 (907)
T 1vlb_A 377 MGDDGKCYIHSKSIGVHLHLYMIAPGVGLEPDQLVLVANPMGGTFGYKFSPTSEA 431 (907)
T ss_dssp ECTTSCEEEEESCSCHHHHHHHHHHHHTCCGGGEEEEECCCSCCTTGGGSCSSHH
T ss_pred EcCCCcEEEEECCcChHHHHHHHHHHhCCChhhEEEEeCcCCCCCCCCccccHHH
Confidence 9976799999999999999999999999999999999999999999998875443
No 5
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Probab=100.00 E-value=2e-89 Score=840.45 Aligned_cols=414 Identities=27% Similarity=0.392 Sum_probs=357.5
Q ss_pred eEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhc-cC
Q 003040 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSV-NG 90 (854)
Q Consensus 12 ~~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~-~g 90 (854)
++|+|+|||+.++++ ++|+++|||+||++++|||||.||++|.||||||+| ||++++||++|+.++ +|
T Consensus 2 ~~~~~~~ng~~~~~~-~~~~~~ll~~Lr~~~~l~g~k~gC~~G~CGaCtv~v----------dg~~v~sC~~~~~~~~~g 70 (907)
T 1dgj_A 2 ETKTLIVNGMARRLL-VSPNDLLVDVLRSQLQLTSVKVGCGKGQCGACTVIL----------DGKVVRACIIKMSRVAEN 70 (907)
T ss_dssp EEEECEETTBCCEEE-ECTTCBHHHHHHHTTCCTTSCCSSSSSSSCTTEEEE----------TTEEEEGGGCBGGGSCTT
T ss_pred ceEEEEECCEEEEEe-cCCCCcHHHHHHHhcCCCccCCCCCCCCcCceEEEE----------CCeEeehhHhHHHHHcCC
Confidence 369999999999997 899999999999999999999999999999999999 799999999999999 99
Q ss_pred ceeEEecCCCCCCCCcchHhHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHh--CCcc
Q 003040 91 CLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIA--GNLC 168 (854)
Q Consensus 91 ~~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~--gnlC 168 (854)
++|+|||||++ .+.|||+|+||+++|++|||||||||||++++||+++ |.| |++||+++|+ ||||
T Consensus 71 ~~i~TiEgl~~-~~~~~~~q~a~~~~~~~qCG~c~pg~~~~~~~ll~~~-----~~p-------~~~~i~~~~~~~gnlc 137 (907)
T 1dgj_A 71 ASVTTLEGIGA-PDCLHPLQHAWIQHGAAQCGFCTPGFIVSAKALLDEN-----VAP-------SREDVRDWFQKHHNIC 137 (907)
T ss_dssp CEEECGGGTCB-TTBCCHHHHHHHHHTCCSSCTTHHHHHHHHHHHHHHC-----SSC-------CHHHHHHHHHHTTCCC
T ss_pred CcEEEECCCCC-CcccCHHHHHHHHcCCCCCCcChhHHHHHHHHHHhcC-----CCC-------CHHHHHHHHHhcCCCc
Confidence 99999999986 5789999999999999999999999999999999653 555 6999999999 9999
Q ss_pred ccCCChhHHHHHHHhhhcccccccCCCcccccCCcccccccCCCCCCCCCcccCCCcccccccCcceeecCCceEEecCC
Q 003040 169 RCTGYRPIADACKSFAADVDIEDLGINSFWAKGESKEVKISRLPPYKHNGELCRFPLFLKKENSSAMLLDVKGSWHSPIS 248 (854)
Q Consensus 169 RCtgy~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~P~s 248 (854)
|||||++|++|++.++..
T Consensus 138 RctgY~~i~~a~~~aa~~-------------------------------------------------------------- 155 (907)
T 1dgj_A 138 RCTGYKPLVDAVMDAAAI-------------------------------------------------------------- 155 (907)
T ss_dssp SSSCSHHHHHHHHHHHHH--------------------------------------------------------------
T ss_pred ccccHHHHHHHHHHHHHh--------------------------------------------------------------
Confidence 999999999999864310
Q ss_pred HHHHHHHHhhhcCCCCCcceEEccCccceEeeccccCceeeeCCCcccccceEecCCcEEecccccHHHHHHHHHHHhhh
Q 003040 249 VQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEALKEETKE 328 (854)
Q Consensus 249 l~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~l~~~~~~ 328 (854)
++ . . .
T Consensus 156 -------~~------~------------------~----------~---------------------------------- 160 (907)
T 1dgj_A 156 -------LR------G------------------E----------K---------------------------------- 160 (907)
T ss_dssp -------HT------T------------------S----------S----------------------------------
T ss_pred -------hc------c------------------C----------C----------------------------------
Confidence 00 0 0 0
Q ss_pred hhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCeeEEEehhhhhcCCCCC
Q 003040 329 FHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEEFLERPPLD 408 (854)
Q Consensus 329 ~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp~~~~sD~~~~LlAldA~v~l~s~~g~R~vpl~dF~~~~~L~ 408 (854)
.| .+ |
T Consensus 161 -------------------------------------~~----~~---------------------------~------- 165 (907)
T 1dgj_A 161 -------------------------------------TV----EE---------------------------I------- 165 (907)
T ss_dssp -------------------------------------CH----HH---------------------------H-------
T ss_pred -------------------------------------Ch----hh---------------------------h-------
Confidence 00 00 0
Q ss_pred CCceEEEEEcCCCCccCCcccCCCcceEEEEEEeccCCCCCccceeeeeEEEEEcCCCCCCCceeeeeEEEEcccCCCcc
Q 003040 409 SRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAFGAFGTKHA 488 (854)
Q Consensus 409 ~~Eii~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~d~a~v~~A~~v~~~~~~~~~~~~i~~~ria~Ggv~~~~p 488 (854)
+
T Consensus 166 -------------------------------------------------------------------------------~ 166 (907)
T 1dgj_A 166 -------------------------------------------------------------------------------S 166 (907)
T ss_dssp -------------------------------------------------------------------------------S
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred eeHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCCCCCCCCHHHHhHHHHHHHHHHHHHHhhhhcCCCccccCCCCCCCCcc
Q 003040 489 IRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGTSIPAYRSSLAVGFLYEFFGSLTEMKNGISRDWLCGYSNNVSLK 568 (854)
Q Consensus 489 ~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~~~~p~~d~~s~eYRr~la~~L~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (854)
++
T Consensus 167 -------------------------------------------------------------~k----------------- 168 (907)
T 1dgj_A 167 -------------------------------------------------------------FK----------------- 168 (907)
T ss_dssp -------------------------------------------------------------CC-----------------
T ss_pred -------------------------------------------------------------cc-----------------
Confidence 00
Q ss_pred ccccccccccccccccccccCccccccccCcCCcCCCCcccccccccccccceecccc--CCCCCCcEEEEEEecCCCCc
Q 003040 569 DSHVQQNHKQFDESKVPTLLSSAEQVVQLSREYYPVGEPITKSGAALQASGEAIYVDD--IPSPINCLYGAFIYSTKPLA 646 (854)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~s~g~q~~~~~~~~~~iGk~~~r~d~~~kvtG~a~Y~~D--i~~~~gmL~a~~vrSp~a~a 646 (854)
.+.++++|||+++|+|+..||||+++|++| ++.+|||||+++||||++||
T Consensus 169 ----------------------------~p~~~~~iG~~~~R~d~~~kvtG~a~Y~~D~~~~~~~gmL~a~~vrSp~aha 220 (907)
T 1dgj_A 169 ----------------------------MPADGRIWGSSIPRPSAVAKVTGLAEFGADAALRMPENTLHLALAQAKVSHA 220 (907)
T ss_dssp ----------------------------CCTTCCCTTSCCCCTTHHHHHHTCCCBHHHHGGGSCTTCEEEEEEECSSSSE
T ss_pred ----------------------------CcccccccCCCCCCcchhhhcCCceEeecCcCccCCCCCeEEEEEecCCCCE
Confidence 001125689999999999999999999999 83379999999999999999
Q ss_pred eeccCCCCccCCCCCEEEEEEcCCCCCCCCCCCcc------ccCCCcccccCCceeecCCeEEEEEeCCHHHHHHhcccc
Q 003040 647 RIKGIEFKSESVPDVVTALLSYKDIPEGGQNIGSK------TIFGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVA 720 (854)
Q Consensus 647 ~I~~ID~s~A~~~PGVv~v~t~~Dip~~g~n~~~~------~~~~d~p~~a~~~V~y~GqpIa~VvAet~~~A~~Aa~~V 720 (854)
+|++||+++|+++|||++|+|++|+|......+.. ....++|+|++++|+|+|||||+|||+|+|+|++|+++|
T Consensus 221 rI~sID~s~A~~~PGV~~V~t~~D~p~~~~~~g~~~~~~~~~~~~~~~~la~~~Vry~Gq~VA~VvAet~~~A~~Aa~~v 300 (907)
T 1dgj_A 221 LIKGIDTSEAEKMPGVYKVLTHKDVKGKNRITGLITFPTNKGDGWERPILNDSKIFQYGDALAIVCADSEANARAAAEKV 300 (907)
T ss_dssp EEEEEECHHHHHSTTEEEEECGGGCCSCSEECCSSCCTTCSSCSCCEESSCSSEECSTTCEEEEEEESSHHHHHHHHTTC
T ss_pred EEEeCChHHHhcCCCcEEEEEcccCCccccccCccccccccccCCCcccccCCeEEEcCCeEEEEEECCHHHHHHHhccc
Confidence 99999999999999999999999998311111110 023588999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCcCCHHHHHhcCCC--CcCCCcc---cCCCCCChhhhc--ccCCeeEEEEEEEECccccCCCCCCeEEE
Q 003040 721 VVDYEMGNLEPPILSVEEAVDRSSL--FEVPSFL---YPKPVGDISKGM--NEADHRILAAEIKLGSQYYFYMETQTALA 793 (854)
Q Consensus 721 ~V~y~~e~l~p~v~~~~~Al~~~~~--~~~~~~~---~~~~~Gd~~~a~--~~a~~~vve~~~~~~~q~H~~mEp~~a~A 793 (854)
+|+| |++ |+++|+++|++++++ |+..+|+ .....||++++| ++|+++ ||++|++++|+|+||||++++|
T Consensus 301 ~Vey--e~l-p~v~~~~~Al~~~a~~i~~~~~n~~~~~~~~~Gd~~~af~~a~A~~v-ve~~y~~~~~~h~~mEp~~~~A 376 (907)
T 1dgj_A 301 KFDL--ELL-PEYMSAPEAMAPDAIEIHPGTPNVYYDQLEEKGEDTVPFFNDPANVV-AEGSYYTQRQPHLPIEPDVGYG 376 (907)
T ss_dssp EEEE--EEC-CCCCSHHHHHSTTCCCSBTTBCSEEEEEEEEESSCSHHHHSCTTSEE-EEEEEEECCCCCCCSSCCEEEE
T ss_pred EEEE--EcC-CCCCCHHHHHhhcCcccccccccccceeccccCChhhhhcccCCCEE-EEEEEEECCccccCCCCCeEEE
Confidence 9999 888 899999999998874 4321232 224689999999 999985 9999999999999999999999
Q ss_pred EECCCCcEEEEeCCCChHHHHHHHHHHhCCC-CCCEEEEeCCcCCCCCCCCCCcHHHH
Q 003040 794 VPDEDNCLVVYSSIQCPESAHATIARCLGIP-EHNVRVITRRVGGAFGGKAIKAMPVS 850 (854)
Q Consensus 794 ~~~~dg~l~V~~stQ~p~~~~~~vA~~Lglp-~~kV~V~~~~~GGgFGgK~~~~~~~a 850 (854)
+|++||+|+||+|||+|+.+|..+|++|||| ++||||+++++|||||+|.+....+.
T Consensus 377 ~~~~~g~l~v~~stQ~p~~~r~~lA~~Lglp~~~~VrV~~~~vGGgFG~K~~~~~~~~ 434 (907)
T 1dgj_A 377 YINEQGQVVIHSKSVAIHLHALMIAPGLGLEFPKDLVLVQNTTGGTFGYKFSPTMEAL 434 (907)
T ss_dssp EECTTSCEEEEECCSCHHHHHHHHHHHHTCCTTTTEEEEECBCSCCTTGGGSCSSHHH
T ss_pred EEcCCCcEEEEECCcCHHHHHHHHHHHhCCCCCccEEEEeCCCCCCCCCCccccHHHH
Confidence 9997679999999999999999999999999 99999999999999999988764433
No 6
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B* 3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B*
Probab=100.00 E-value=1.2e-59 Score=513.04 Aligned_cols=294 Identities=22% Similarity=0.408 Sum_probs=268.3
Q ss_pred cceeecC-CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceE-eecc-ccCceeeeCCCcccccceEecCCcEEe
Q 003040 233 SAMLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGY-YKEV-EHYDKYIDIRYIPELSVIRRDQTGIEI 309 (854)
Q Consensus 233 ~~~~~~~-~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~-~k~~-~~~~~lIdl~~I~EL~~I~~~~~~l~I 309 (854)
+++.+.+ .++||+|+|++||+++|++ ++++++|||||+|++ +|.+ ..++.+|||++|+||+.|+.++++|+|
T Consensus 2 ~~l~~~g~~~~y~~P~sl~ea~~ll~~-----~~~a~~laGGT~l~~~~k~~~~~~~~lIdl~~i~eL~~I~~~~~~l~I 76 (305)
T 3nvz_B 2 KQLRFEGERVTWIQASTLKELLDLKAQ-----HPEAKLVVGNTEIGIEMKFKNQLFPMIICPAWIPELNAVEHGPEGISF 76 (305)
T ss_dssp CCEEEECSSCEEEECCSHHHHHHHHHH-----CTTCEECSSCTTHHHHHHHSCCCCSEEEECTTCGGGGCEEECSSEEEE
T ss_pred CceEecCCCeEEEccCCHHHHHHHHHh-----CCCCEEEECccHHHHHHhcCCCCCCEEEECCCChhhcceEECCCeEEE
Confidence 4567777 8999999999999999984 578999999999998 4543 679999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEe
Q 003040 310 GATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMT 389 (854)
Q Consensus 310 GA~vTl~~l~~~l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp~~~~sD~~~~LlAldA~v~l~s 389 (854)
||+||+++|++++.+.+..++....+.+|.|++++++|||+||||+||||||||+++|. ||++|+|+||||+|+|.+
T Consensus 77 GA~vt~~~l~~~~~~~~~~~p~~~~~~~p~L~~a~~~ia~~qiRN~aTiGGNl~~a~p~---sD~~~~L~AldA~v~l~~ 153 (305)
T 3nvz_B 77 GAACALSSVEKTLLEAVAKLPTQKTEVFRGVLEQLRWFAGKQVKSVASLGGNIITASPI---SDLNPVFMASGTKLTIVS 153 (305)
T ss_dssp ETTCBHHHHHHHHHHHHHHSCGGGCHHHHHHHHHHTTSSCHHHHTTCBHHHHHHHCCTT---CSSHHHHHHHTCEEEEEE
T ss_pred ccCCcHHHHHHHHHhhhcccchhhhhhhHHHHHHHHHhCCHHHhCeeechheeCCCCCc---hHHHHHHHHcCCEEEEEc
Confidence 99999999999877665555655667899999999999999999999999999999998 999999999999999999
Q ss_pred CCeeEEEehh-hhhc---CCCCCCCceEEEEEcCCCCccCCcccCCCcceEEEEEEeccCCCCCccceeeeeEEEEEcCC
Q 003040 390 GQKCEKLMLE-EFLE---RPPLDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPC 465 (854)
Q Consensus 390 ~~g~R~vpl~-dF~~---~~~L~~~Eii~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~d~a~v~~A~~v~~~~~ 465 (854)
.+|+|+||++ |||. ++.|.++|||++|+||.+.. +.++.+||+.+| +++|||+||+|+.+++++
T Consensus 154 ~~G~R~vp~~~df~~g~~~t~l~~~Eil~~I~iP~~~~----------~~~~~~~k~~~R-~~~d~a~v~~A~~~~~~~- 221 (305)
T 3nvz_B 154 RGTRRTVPMDHTFFPSYRKTLLGPEEILLSIEIPYSRE----------DEFFSAFKQASR-REDDIAKVTCGMRVLFQP- 221 (305)
T ss_dssp TTEEEEEECCGGGCCSTTCCSCCTTCEEEEEEEECCCT----------TEEEEEEECSCC-CSSSSCCCEEEEEEEEST-
T ss_pred CCCcEEEEeehHhhcCcccccCCCCcEEEEEEecCCCC----------CCceEEEEEEec-CCCChhheEEEEEEEEeC-
Confidence 9999999998 8997 57899999999999998865 466788999999 799999999999999973
Q ss_pred CCCCCceeeeeEEEEcccCCCcceeHHHHHHHHcCCCCCHHHHHHHHHHHhhcCC-CCCCC-CCHHHHhHHHHHHHHHHH
Q 003040 466 KTGDGIRVNNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVV-PEDGT-SIPAYRSSLAVGFLYEFF 543 (854)
Q Consensus 466 ~~~~~~~i~~~ria~Ggv~~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~~~~-p~~d~-~s~eYRr~la~~L~~r~l 543 (854)
++++|+++||+||||+++ |+|++++|++|.||+|+++++++|++.+.+++. |.+|. +|++||++|+++|++|||
T Consensus 222 ---~~~~i~~~ria~Ggv~~~-p~ra~~~E~~L~G~~~~~~~~~~a~~~~~~~~~~~~~d~~~s~~YR~~la~~l~~r~l 297 (305)
T 3nvz_B 222 ---GSMQVKELALCYGGMADR-TISALKTTQKQLSKFWNEKLLQDVCAGLAEELSLSPDAPGGMIEFRRTLTLSFFFKFY 297 (305)
T ss_dssp ---TSSBEEEEEEEEESSSSS-CEECHHHHHTTTTCBSSHHHHHHHHHHHHHHTCCCTTCTTCCHHHHHHHHHHHHHHHH
T ss_pred ---CCCeEEEEEEEEEcccCc-EeeHHHHHHHhcCCCCCHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 137999999999999999 999999999999999999999999999999996 66665 699999999999999999
Q ss_pred HHHhhhh
Q 003040 544 GSLTEMK 550 (854)
Q Consensus 544 ~~~~~~~ 550 (854)
+++.+++
T Consensus 298 ~~~~~~l 304 (305)
T 3nvz_B 298 LTVLKKL 304 (305)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9998765
No 7
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=100.00 E-value=9.3e-59 Score=503.60 Aligned_cols=278 Identities=21% Similarity=0.286 Sum_probs=255.6
Q ss_pred CceEEecCCHHHHHHHHhhhcCCCCC-cceEEccCccceE-eecc-ccCceeeeCCCcccccceEecCCcEEecccccHH
Q 003040 240 KGSWHSPISVQELRNVLESVEGSNQI-SSKLVAGNTGMGY-YKEV-EHYDKYIDIRYIPELSVIRRDQTGIEIGATVTIS 316 (854)
Q Consensus 240 ~~~~~~P~sl~eal~ll~~~~~~~~~-~a~lvaGgT~l~~-~k~~-~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~ 316 (854)
.|+|++|+||+||+++|+++ .+ ++++|||||+|++ +|.+ ..|+++|||++|+||++|+.++++|+|||+|||+
T Consensus 3 ~f~y~~P~sl~ea~~ll~~~----~~~~a~~laGGT~l~~~~k~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vt~~ 78 (296)
T 3hrd_C 3 DFEFFAPKTLEEAKGLLHQY----KDVPPAIIAGGTDLVIEINDRWEKPDVVIDIKKLKELEYIRVEENTIHIGALSTFT 78 (296)
T ss_dssp CCEEECCSSHHHHHHHHHHT----TTSCCEEESSCTTHHHHHHTTSCCCSEEEECTTCGGGCCEEECSSEEEEETTCBHH
T ss_pred ceeEeCCCCHHHHHHHHHhC----CCCCeEEEECCcHHHHHhhcCCCCCCeEEEcccChhhcceEEcCCeEEEccCCcHH
Confidence 48999999999999999953 22 5999999999999 5654 6899999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCeeEEE
Q 003040 317 KAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKL 396 (854)
Q Consensus 317 ~l~~~l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp~~~~sD~~~~LlAldA~v~l~s~~g~R~v 396 (854)
+|+++.. ..+.+|.|++++++|||+||||+||||||||+++|. ||++|+|+||||+|+|.+.+|+|+|
T Consensus 79 ~l~~~~~---------~~~~~p~L~~a~~~ias~qIRN~aTiGGNi~~a~p~---sD~~~~LlAldA~v~l~~~~g~R~v 146 (296)
T 3hrd_C 79 QIENHPF---------IRSHVRALYKAASQVGSPQIRNLGTIGGNLSTSSVA---GDGVSAMTTLDATVVLESVRGTRQM 146 (296)
T ss_dssp HHHHCHH---------HHHHCHHHHHHHHTSSCHHHHHHCBHHHHHHHTCTT---CHHHHHHHHTTCEEEEEETTEEEEE
T ss_pred HHHhChh---------hhhHhHHHHHHHHHhCCHHHhcceehhhhhccCCCc---hHHHHHHHHhCcEEEEEcCCceEEE
Confidence 9997521 123699999999999999999999999999999998 9999999999999999999999999
Q ss_pred ehhhhhc------CCCCCCCceEEEEEcCCCCccCCcccCCCcceEEEEEEeccCCCCCccceeeeeEEEEEcCCCCCCC
Q 003040 397 MLEEFLE------RPPLDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDG 470 (854)
Q Consensus 397 pl~dF~~------~~~L~~~Eii~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~d~a~v~~A~~v~~~~~~~~~~ 470 (854)
|++|||. ++.|+++|||++|+||.+.. +.++.+||+++| +++|||+||+|+.+++++ +
T Consensus 147 p~~dF~~g~~~~~~t~L~~~Eil~~I~iP~~~~----------~~~~~~~K~~~R-~~~d~a~v~~A~~~~~~~-----~ 210 (296)
T 3hrd_C 147 KLTDFFDGEGFKRRNALEADEIMTEVIIDRPDA----------HSASAFYKLAKR-KSLAISVIGGGMAVKVDD-----A 210 (296)
T ss_dssp EHHHHHHCCSSSSSSSCCTTCEEEEEEEECCCT----------TEEEEEEEECSS-SSSCCCSEEEEEEEEEET-----T
T ss_pred EHHHHhcccccccccCCCCCcEEEEEEecCCCC----------CCceEEEEeccc-cccchhhheEEEEEEEcC-----C
Confidence 9999997 67899999999999998764 466778899988 899999999999999973 4
Q ss_pred ceeeeeEEEEcccCCCcceeHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCCCCCC-CCHHHHhHHHHHHHHHHHHHHhhh
Q 003040 471 IRVNNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGT-SIPAYRSSLAVGFLYEFFGSLTEM 549 (854)
Q Consensus 471 ~~i~~~ria~Ggv~~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~~~~p~~d~-~s~eYRr~la~~L~~r~l~~~~~~ 549 (854)
++|+++||+|||++++ |+|++++|++|.||+|+++++++|++.+.+++.|.+|. +|++||++|+++|++|+|.++.++
T Consensus 211 g~i~~~ria~Ggv~~~-p~ra~~~E~~L~G~~~~~~~~~~a~~~~~~~~~p~~d~r~s~~YR~~la~~l~~r~l~~~~~~ 289 (296)
T 3hrd_C 211 GVCTWASMRGGCIGRY-PLHFKQAEEMLVGAPLTMETMEATLPILHDTVYDMARARPSVLYKKESVQGVFKKLFVDILDQ 289 (296)
T ss_dssp TEEEEEEEEEETSSSS-CEECHHHHHHHTTSBCCHHHHHTTHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEEECCCcc-ccchHHHHHHhcCCCCCHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999 99999999999999999999999999999999998887 599999999999999999999987
Q ss_pred h
Q 003040 550 K 550 (854)
Q Consensus 550 ~ 550 (854)
.
T Consensus 290 ~ 290 (296)
T 3hrd_C 290 L 290 (296)
T ss_dssp H
T ss_pred h
Confidence 6
No 8
>3nvw_A Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, guanine, oxidoredu; HET: FAD MTE GUN; 1.60A {Bos taurus} PDB: 3etr_A* 3ns1_A* 3nvv_A* 3nrz_A* 3nvy_A* 3nvz_A* 3rca_A* 3sr6_A* 3eub_A*
Probab=100.00 E-value=1.6e-59 Score=459.20 Aligned_cols=162 Identities=50% Similarity=0.992 Sum_probs=150.9
Q ss_pred eeEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccC
Q 003040 11 RHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNG 90 (854)
Q Consensus 11 ~~~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g 90 (854)
..+|+|+|||+++...+++|+++||||||+++||||||.||++|+||||||+|+++++.++++.|++||||++|+.+++|
T Consensus 2 ~~~i~~~vNG~~~~~~~~~p~~~Ll~~LR~~lgltGtK~GC~~G~CGACTVlvd~~~~~~~~~~g~~v~SCl~~a~~~~G 81 (164)
T 3nvw_A 2 ADELVFFVNGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLSKYDRLQDKIIHFSANACLAPICTLHH 81 (164)
T ss_dssp CCCEEEEETTEEEEETTCCTTCBHHHHHHHTSCCTTSCCSCSSSSSCTTEEEEEEEETTTTEEEEEEEETTTCBGGGCTT
T ss_pred CceEEEEECCEEEEEecCCCCCCHHHHHHHHcCCCCcCCCcCCCCCCCCEEEEccccccccccCCcEEehhhhhHHHhCC
Confidence 46799999999975435899999999999999999999999999999999999999988888889999999999999999
Q ss_pred ceeEEecCCCCCCCCcchHhHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCcccc
Q 003040 91 CLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRC 170 (854)
Q Consensus 91 ~~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRC 170 (854)
++|+|||||++.++.|||||+||+++|++|||||||||||++++||+++ |+| |++||+++|+||||||
T Consensus 82 ~~I~TiEGL~~~~~~lhpvQ~af~~~~~~QCGfCtPG~imsa~aLl~~~-----p~p-------t~~eI~~al~GNlCRC 149 (164)
T 3nvw_A 82 VAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGIVMSMYTLLRNQ-----PEP-------TVEEIEDAFQGNLCRC 149 (164)
T ss_dssp CEEECGGGTCCTTSCCCHHHHHHHHTTCCSSCTTHHHHHHHHHHHHHHC-----SSC-------CHHHHHTSCTTCCCSS
T ss_pred cceEEecccCCCCCccCHHHHHHHHcCCCcCccchhhHHHHHHHHHHhC-----CCC-------CHHHHHHHHcCCCCCC
Confidence 9999999998655679999999999999999999999999999999653 666 6999999999999999
Q ss_pred CCChhHHHHHHHhh
Q 003040 171 TGYRPIADACKSFA 184 (854)
Q Consensus 171 tgy~~i~~a~~~~~ 184 (854)
|||++|++|+++|+
T Consensus 150 TgY~~I~~Av~~~~ 163 (164)
T 3nvw_A 150 TGYRPILQGFRTFA 163 (164)
T ss_dssp SCSHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999999886
No 9
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3
Probab=100.00 E-value=1.3e-56 Score=484.95 Aligned_cols=271 Identities=23% Similarity=0.276 Sum_probs=248.4
Q ss_pred CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceE-eecc-ccCceeeeCCCcccccceEecCCcEEecccccHHH
Q 003040 240 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGY-YKEV-EHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISK 317 (854)
Q Consensus 240 ~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~-~k~~-~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~ 317 (854)
.|+|++|+|++||+++|++ ++++++|||||+|++ +|.+ ..|+.+|||++|+||+.|+.++++|+|||+||+++
T Consensus 5 ~f~y~~P~sl~ea~~ll~~-----~~~a~~laGGT~l~~~~k~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vt~~~ 79 (288)
T 1t3q_C 5 AFSYRAPASLQEVIQVLAD-----DPDARIIAGGQSLLPLLAFRLVYPSCLVDLRNVSELFEISQSAGILSVGAMVTHFR 79 (288)
T ss_dssp CCEEECCSSHHHHHHHHHH-----CTTCEEESSCTTHHHHHHTTCCCCSEEEECTTCGGGGCEEEETTEEEEETTCBHHH
T ss_pred CceEECCCCHHHHHHHHhh-----CCCCEEEeCchhHHHHHhcCCCCCCEEEECCCChhhcCeEEcCCEEEEcCCCcHHH
Confidence 5799999999999999983 578999999999999 4554 67999999999999999999999999999999999
Q ss_pred HHHH--HHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCeeEE
Q 003040 318 AIEA--LKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEK 395 (854)
Q Consensus 318 l~~~--l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp~~~~sD~~~~LlAldA~v~l~s~~g~R~ 395 (854)
|+++ ++ +.+|.|++++++|||+||||+||||||||+++|. ||++|+|+||||+|+|.+.+|+|+
T Consensus 80 l~~~~~~~-----------~~~p~L~~a~~~ias~qiRN~aTiGGNi~~a~p~---sD~~~~L~Al~A~v~l~~~~g~R~ 145 (288)
T 1t3q_C 80 NKTDPTVA-----------KCVPILPKVLAHVAHQAVRNRGTLGGSLAHADAG---AEMPFLMATLGATMYIASSAGVRS 145 (288)
T ss_dssp HHHCHHHH-----------HHCTHHHHHHTTSSCHHHHTTCBHHHHHHHTCTT---CHHHHHHHHTTCEEEEEETTEEEE
T ss_pred HhcCHHHH-----------HHHHHHHHHHHHhCCHHHHcceechhhcccCCCc---HHHHHHHHHcCcEEEEEcCCceEE
Confidence 9974 33 2589999999999999999999999999999998 999999999999999999999999
Q ss_pred Eehhhhhc---CCCCCCCceEEEEEcCCCCccCCcccCCCcceEEEEEEeccCCCCCccceeeeeEEEEEcCCCCCCCce
Q 003040 396 LMLEEFLE---RPPLDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIR 472 (854)
Q Consensus 396 vpl~dF~~---~~~L~~~Eii~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~d~a~v~~A~~v~~~~~~~~~~~~ 472 (854)
||++|||. ++.|+++|||++|+||.+.. ... ++|+.+| . .|||+||+|+.++++ +++
T Consensus 146 vp~~dF~~g~~~t~L~~~Eil~~I~iP~~~~----------~~~--y~K~~~R-~-~d~a~v~~a~~~~~~------~~~ 205 (288)
T 1t3q_C 146 VSATDFMKGHYFTDLEAGEVLVRVEIPIPAL----------HWE--FDEYARR-K-GDYALVMAAAGLSMQ------GGR 205 (288)
T ss_dssp EEHHHHEEETTEESCCTTCEEEEEEEECCSS----------EEE--EEEECSS-T-TSCCSEEEEEEEEEE------TTE
T ss_pred EEHHHHhcCcccccCCCCCEEEEEEecCCCC----------CCc--EEEeCCC-c-cchhheEEEEEEEEc------CCe
Confidence 99999998 46899999999999998764 222 5777755 4 499999999999996 368
Q ss_pred eeeeEEEEcccCCCcceeHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCCCCCC-CCHHHHhHHHHHHHHHHHHHHhhhh
Q 003040 473 VNNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGT-SIPAYRSSLAVGFLYEFFGSLTEMK 550 (854)
Q Consensus 473 i~~~ria~Ggv~~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~~~~p~~d~-~s~eYRr~la~~L~~r~l~~~~~~~ 550 (854)
|+++||+|||++++ |+|++++|++|.||+|+++++++|++.+.+++.|.+|. +|++||++|+++|++|+|.++.++.
T Consensus 206 i~~~ria~Ggv~~~-p~r~~~~E~~L~G~~~~~~~~~~a~~~~~~~~~p~~d~r~s~~YR~~l~~~l~~r~l~~~~~~~ 283 (288)
T 1t3q_C 206 CVAARIALGAVEER-AHQAIRANDFLVGKVIDESTAATAAELATEGLEPRSDIHGSRDLRLSLAKAITQRVILKAAQGA 283 (288)
T ss_dssp EEEEEEEEESSSSS-CEECHHHHHHHTTCCCCHHHHHHHHHHHHTTCCCCCBTTBCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEECCCCe-eEEcHHHHHHhcCCCCCHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999 99999999999999999999999999999999999987 5999999999999999999998764
No 10
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C*
Probab=100.00 E-value=1.8e-55 Score=476.56 Aligned_cols=274 Identities=19% Similarity=0.229 Sum_probs=250.0
Q ss_pred CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceE-eecc-ccCceeeeCCCcccccceEecCCcEEecccccHHH
Q 003040 240 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGY-YKEV-EHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISK 317 (854)
Q Consensus 240 ~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~-~k~~-~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~ 317 (854)
.|+|++|+|++||+++|+++ .+++++|+|||+|++ +|.+ ..|+++|||++|+||+.|+.++++|+|||+||+++
T Consensus 5 ~~~~~~P~sl~ea~~ll~~~----~~~a~~laGGT~l~~~~k~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~~t~~~ 80 (288)
T 1n62_C 5 SFDYHRPKSIADAVALLTKL----GEDARPLAGGHSLIPIMKTRLATPEHLVDLRDIGDLVGIREEGTDVVIGAMTTQHA 80 (288)
T ss_dssp CCEEECCSSHHHHHHHHHHH----GGGEEEESSCTTHHHHHHTTSCCCSEEEECTTCGGGSCEEEETTEEEEETTCBHHH
T ss_pred ceEEECcCCHHHHHHHHHhc----CCCCEEEECchHHHHHHhcCCCCCCEEEECCCChhhcceEecCCEEEEccCCcHHH
Confidence 47999999999999999853 378999999999999 4665 68999999999999999999999999999999999
Q ss_pred HHH--HHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCeeEE
Q 003040 318 AIE--ALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEK 395 (854)
Q Consensus 318 l~~--~l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp~~~~sD~~~~LlAldA~v~l~s~~g~R~ 395 (854)
|++ .+++ .+|.|.+++++|||+||||+||||||||+++|. ||++|+|+||||+|++.+.+|.|+
T Consensus 81 l~~~~~~~~-----------~~p~L~~a~~~ia~~qiRN~gTiGGnl~~a~p~---sD~~~~L~Al~A~v~l~~~~G~r~ 146 (288)
T 1n62_C 81 LIGSDFLAA-----------KLPIIRETSLLIADPQIRYMGTIGGNAANGDPG---NDMPALMQCLGAAYELTGPEGARI 146 (288)
T ss_dssp HHHCHHHHH-----------HCHHHHHHHTTSSCHHHHHHCBHHHHHHSCCTT---CSHHHHHHHHTCEEEEEETTEEEE
T ss_pred HhcChHHHH-----------HHHHHHHHHHHhCCHHHHccccccchhccCCCc---hHHHHHHHHhCcEEEEEeCCccEE
Confidence 996 3432 489999999999999999999999999999998 999999999999999999999999
Q ss_pred Eehhhhhc---CCCCCCCceEEEEEcCCCCccCCcccCCCcceEEEEEEeccCCCCCccceeeeeEEEEEcCCCCCCCce
Q 003040 396 LMLEEFLE---RPPLDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIR 472 (854)
Q Consensus 396 vpl~dF~~---~~~L~~~Eii~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~d~a~v~~A~~v~~~~~~~~~~~~ 472 (854)
+|++|||. ++.|+++|||++|.||.+.. +..+.++|+. | +..|||+||+|+.++++ +++
T Consensus 147 v~~~df~~g~~~t~l~~~eil~~i~ip~~~~----------~~~~~y~k~~-r-r~~d~a~v~~a~~~~~~------~~~ 208 (288)
T 1n62_C 147 VAARDYYQGAYFTAIEPGELLTAIRIPVPPT----------GHGYAYEKLK-R-KIGDYATAAAAVVLTMS------GGK 208 (288)
T ss_dssp EEHHHHEEETTEESCCTTCEEEEEEEECCCT----------TCEEEEEEEC-S-STTCCCSEEEEEEEEEE------TTE
T ss_pred EEHHHHhcCcccccCCCCCEEEEEEeCCCCC----------CCceEEEEeC-C-CccCHhheeEEEEEEEc------CCe
Confidence 99999997 46899999999999998764 3445566666 5 46699999999999996 368
Q ss_pred eeeeEEEEcccCCCcceeHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCCCCCC-CCHHHHhHHHHHHHHHHHHHHhhhh
Q 003040 473 VNNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGT-SIPAYRSSLAVGFLYEFFGSLTEMK 550 (854)
Q Consensus 473 i~~~ria~Ggv~~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~~~~p~~d~-~s~eYRr~la~~L~~r~l~~~~~~~ 550 (854)
|+++||+|||++++ |+|++++|++|.||+|+++++++|++.+.+++.|.+|. +|++||++|+++|++|+|.++.++.
T Consensus 209 i~~~ria~Ggv~~~-p~ra~~~E~~L~G~~~~~~~~~~a~~~~~~~~~p~~d~r~s~~YR~~l~~~l~~r~l~~~~~~~ 286 (288)
T 1n62_C 209 CVTASIGLTNVANT-PLWAEEAGKVLVGTALDKPALDKAVALAEAITAPASDGRGPAEYRTKMAGVMLRRAVERAKARA 286 (288)
T ss_dssp EEEEEEEEESSSSS-CEECHHHHHHHTTSCCCHHHHHHHHHHHHHHCCCCCBTTBCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEEEECCcCc-eEECHHHHHHhcCCCCCHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999 99999999999999999999999999999999999987 5999999999999999999988753
No 11
>3hrd_A Nicotinate dehydrogenase large molybdopterin subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=100.00 E-value=9.5e-56 Score=502.25 Aligned_cols=241 Identities=26% Similarity=0.405 Sum_probs=220.1
Q ss_pred cCCcCCCCcccccccccccccceeccccCCCCCCcEEEEEEecCCCCceeccCCCCccCCCCCEEEEEEcCCCCCCCCCC
Q 003040 599 REYYPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNI 678 (854)
Q Consensus 599 ~~~~~iGk~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~~ID~s~A~~~PGVv~v~t~~Dip~~g~n~ 678 (854)
+++++|||+++|+|+..||||+++|++|+. +|||||++++|||++||+|++||+++|+++|||++|+|++|+| +.|.
T Consensus 3 ~~~~~iG~~~~R~d~~~kvtG~a~Y~~Di~-~pgmL~a~~vrSp~a~a~I~siD~s~A~~~pGV~~V~t~~d~p--~~~~ 79 (425)
T 3hrd_A 3 KDYQVLGKNKVKVDSLEKVMGTAKFAADYS-FPDMLYAGVFRSTVPHARIVSLDLSKARAIDGVEAVLDYHAIP--GKNR 79 (425)
T ss_dssp CCCSSTBCCCCCTTHHHHHHTCCCBGGGCC-CTTCEEEEEEECSSSSEEEEEEECHHHHTSTTEEEEECGGGCS--SCCC
T ss_pred CCCCccCCcCcCcchHHHCCCceecccccC-CCCCEEEEEEeCCCCCEEEEEeEhHHHhcCCCeEEEEEcccCC--CcCc
Confidence 567899999999999999999999999997 7999999999999999999999999999999999999999999 5553
Q ss_pred CccccCCCcccccCCceeecCCeEEEEEeCCHHHHHHhccccEEEEecCCCCCCcCCHHHHHhcCCC--CcCCCcc---c
Q 003040 679 GSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSSL--FEVPSFL---Y 753 (854)
Q Consensus 679 ~~~~~~~d~p~~a~~~V~y~GqpIa~VvAet~~~A~~Aa~~V~V~y~~e~l~p~v~~~~~Al~~~~~--~~~~~~~---~ 753 (854)
......++|+|++++|+|+|||||+|||+|+|+|++|+++|+|+| +++ |+++|+++|+++++. ++ +.|+ .
T Consensus 80 -~~~~~~~~~~la~~~Vr~~G~~VA~VvA~t~~~A~~A~~~v~V~y--e~l-p~v~~~~~a~~~~a~~~~~-~~n~~~~~ 154 (425)
T 3hrd_A 80 -FGIIIKDEPCLVDDKVRRYGDAIAVVAAQTPDLVQEALDAITIEY--EEL-EGIFTMERALEEDSPAIHG-DTNIHQVK 154 (425)
T ss_dssp -BCSSSCCBCSSCSSCBCSTTCEEEEEEESSHHHHHHHHHHCEEEE--EEC-CCCCCHHHHHSTTSCCSST-TCSEEEEE
T ss_pred -CCCCCCccccccCceEEECCCeEEEEEECCHHHHHHHhcCCeEEE--EeC-CCCCCHHHHhhcCCccccC-CCcccccc
Confidence 122346899999999999999999999999999999999999999 788 899999999998764 33 2332 1
Q ss_pred CCCCCChhhhcccCCeeEEEEEEEECccccCCCCCCeEEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCCCEEEEeC
Q 003040 754 PKPVGDISKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITR 833 (854)
Q Consensus 754 ~~~~Gd~~~a~~~a~~~vve~~~~~~~q~H~~mEp~~a~A~~~~dg~l~V~~stQ~p~~~~~~vA~~Lglp~~kV~V~~~ 833 (854)
....||++++|++|+++ ||++|++++|+|+||||++|+|+|++||+|+||+|||+|+.+|..+|++||||++||+|+++
T Consensus 155 ~~~~Gd~~~a~a~A~~v-ve~~y~~~~~~H~~mEp~~~~A~~~~~g~l~v~~stQ~p~~~r~~vA~~Lglp~~~VrV~~~ 233 (425)
T 3hrd_A 155 HLEYGDVDAAFKQCDIV-VEDTYSTHRLTHMFIEPDAGVSYYDNEGMLTVVVSTQNPHYDRGEVAGMLALPNSKVRIIQA 233 (425)
T ss_dssp EEEESCHHHHHHTCSEE-EEEEEEECCCCCCCSSCCEEEEEECTTCCEEEEECCSCHHHHHHHHHHHTTCCGGGEEEEEC
T ss_pred ccccCCHHHHhhcCceE-EEEEEEeCCccccCCCCceEEEEECCCCeEEEEECCCCHHHHHHHHHHHhCCChhhEEEEeC
Confidence 35789999999999985 99999999999999999999999997779999999999999999999999999999999999
Q ss_pred CcCCCCCCCCCCcHH
Q 003040 834 RVGGAFGGKAIKAMP 848 (854)
Q Consensus 834 ~~GGgFGgK~~~~~~ 848 (854)
++|||||+|.+....
T Consensus 234 ~vGGgFG~K~~~~~~ 248 (425)
T 3hrd_A 234 TTGGGFGGKLDLSVQ 248 (425)
T ss_dssp BCCCCTTTTSSCSSH
T ss_pred CCCCCCCCCcccCHH
Confidence 999999999987654
No 12
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1 d.145.1.3 PDB: 1sb3_B*
Probab=100.00 E-value=3.6e-55 Score=478.75 Aligned_cols=270 Identities=19% Similarity=0.200 Sum_probs=246.1
Q ss_pred CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceE-eecc-ccCceeeeCCCcccccceEecCC-cEEecccccHH
Q 003040 240 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGY-YKEV-EHYDKYIDIRYIPELSVIRRDQT-GIEIGATVTIS 316 (854)
Q Consensus 240 ~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~-~k~~-~~~~~lIdl~~I~EL~~I~~~~~-~l~IGA~vTl~ 316 (854)
.|+|++|+||+||+++|+ + +++++|||||+|++ +|.+ ..|+.+|||++|+||+.|+.+++ +|+|||+||++
T Consensus 6 ~f~y~~P~sl~ea~~ll~-----~-~~a~~lAGGT~l~~~~k~~~~~p~~lIdi~~i~eL~~I~~~~~~~l~IGA~vt~~ 79 (324)
T 1rm6_B 6 DFRTHRPATLADAVNALA-----A-EATLPLGAGTDLLPNLRRGLGHPAALVDLTGIDGLATISTLADGSLRIGAGATLE 79 (324)
T ss_dssp CCEEECCSSHHHHHHHTT-----S-TTEEEESSCTTHHHHHHTTSCCCSEEEECTTSTTTTCEEECTTSCEEEETTCBHH
T ss_pred ceEEEccCCHHHHHHHHh-----C-CCCEEEECchhHHHHHhccCCCCCEEEECCCChhhcceEECCCCeEEEccCCcHH
Confidence 578999999999999998 3 78999999999998 5665 68999999999999999999865 99999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCcc----------------------------------
Q 003040 317 KAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNL---------------------------------- 362 (854)
Q Consensus 317 ~l~~~l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl---------------------------------- 362 (854)
+|+++.. ..+.+|.|++++++|||+||||+|||||||
T Consensus 80 ~l~~~~~---------~~~~~p~L~~a~~~ias~qIRN~aTiGGNl~~~~rC~y~~~~~~~k~~g~~c~a~~g~~~~~a~ 150 (324)
T 1rm6_B 80 AIAEHDA---------IRTTWPALAQAAESVAGPTHRAAATLGGNLCQDTRCTFYNQSEWWRSGNGYCLKYKGDKCHVIV 150 (324)
T ss_dssp HHHHCHH---------HHHHSHHHHHHHHHSSCHHHHHHCBHHHHHTCCCBCTTTSSCHHHHHHTTCBTTBBCSCCSSST
T ss_pred HHHhChH---------HHHHHHHHHHHHHHhCCHHHcceeEeeeecccccccccccccccccccCccccccccccceeec
Confidence 9998621 123599999999999999999999999999
Q ss_pred ----ccccCCCCCCchHHHHHhcCcEEEEEeCCeeEEEehhhhhc-----CCCCCCCceEEEEEcCCCCccCCcccCCCc
Q 003040 363 ----VMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEEFLE-----RPPLDSRSILLSVEIPCWDLTRNVTSETNS 433 (854)
Q Consensus 363 ----~~asp~~~~sD~~~~LlAldA~v~l~s~~g~R~vpl~dF~~-----~~~L~~~Eii~~I~iP~~~~~~~~~~~~~~ 433 (854)
|+++|. ||++|+|+||||+|+|.+.+|+|+||++|||. ++.|++||||++|+||.+ .
T Consensus 151 ~g~~c~a~p~---sD~~~~L~AldA~v~l~~~~g~R~vp~~dF~~~~~~~~t~L~~~Eil~~I~iP~~-~---------- 216 (324)
T 1rm6_B 151 KSDRCYATYH---GDVAPALMVLDARAEIVGPAGKRTVPVAQLFRESGAEHLTLEKGELLAAIEVPPT-G---------- 216 (324)
T ss_dssp TCSSCCCBCC---CSHHHHHHHTTCEEEEEETTEEEEEEGGGGBCSCTTSCBCCCTTCEEEEEEECCC-T----------
T ss_pred ccccccCCCc---chhHHHHHHcCCEEEEEeCCCcEEEEHHHHhcCCccccccCCCCCEEEEEEecCC-C----------
Confidence 589987 99999999999999999999999999999996 458999999999999963 2
Q ss_pred ceEEEEEEeccCCCCCccceeeeeEEEEEcCCCCCCCceeeeeEEEEcccCCCcceeHHHHHHHHcCCCCCHHHHHHHHH
Q 003040 434 VLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIK 513 (854)
Q Consensus 434 ~~~~~~~K~~~R~~~~d~a~v~~A~~v~~~~~~~~~~~~i~~~ria~Ggv~~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~ 513 (854)
...+.++|+.+| +.+|||+||+|+.++++ +++|+++||+|||++++ |+|+ ++|++| ||.|+++++++|++
T Consensus 217 ~~~~~y~K~~~R-~~~d~a~v~~A~~~~~~------~~~i~~~ria~Ggva~~-p~ra-~~E~~L-G~~~~~~~~~~a~~ 286 (324)
T 1rm6_B 217 AWSAAYSKVRIR-DAVDFPLAGVAAALQRD------GDRIAGLRVAITGSNSA-PLMV-PVDALL-GGNWDDAAAETLAQ 286 (324)
T ss_dssp TCEEEEEEECSS-SSSCCCSEEEEEEEEEE------TTEEEEEEEEEESSSSS-CEEC-CCGGGT-TSCCSHHHHHHHHH
T ss_pred CCceEEEEECcC-CccchhhEEEEEEEEEc------CCcEEEEEEEEEcCCCe-EEeh-HHHHHc-CCCCCHHHHHHHHH
Confidence 345667888888 79999999999999996 36899999999999999 9999 999999 99999999999999
Q ss_pred HHhhcCCCCCCC-CCHHHHhHHHHHHHHHHHHHHhh
Q 003040 514 LLRDSVVPEDGT-SIPAYRSSLAVGFLYEFFGSLTE 548 (854)
Q Consensus 514 ~l~~~~~p~~d~-~s~eYRr~la~~L~~r~l~~~~~ 548 (854)
.+.+++.|.+|. +|++||++|+++|++|+|.++.+
T Consensus 287 ~~~~~~~p~~d~r~s~~YR~~la~~l~~r~l~~~~~ 322 (324)
T 1rm6_B 287 LVRKTSNVLRTTITGVKYRRRVLLAISRKVVDQLWE 322 (324)
T ss_dssp HHHHHCCCCTTSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999987 69999999999999999998864
No 13
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=100.00 E-value=1e-54 Score=425.55 Aligned_cols=152 Identities=36% Similarity=0.646 Sum_probs=143.5
Q ss_pred eeEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccC
Q 003040 11 RHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNG 90 (854)
Q Consensus 11 ~~~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g 90 (854)
+|+|+|+|||+.++++ ++|+++|||+||+++||+|+|.||++|.||||||+| ||++|+||++|+.+++|
T Consensus 3 ~~~i~~~vNG~~~~v~-v~p~~tLLd~LR~~lgltgtk~gC~~G~CGACtV~v----------dG~~v~sC~~~~~~~~G 71 (160)
T 3hrd_D 3 KITINLNLNGEARSIV-TEPNKRLLDLLREDFGLTSVKEGCSEGECGACTVIF----------NGDPVTTCCMLAGQADE 71 (160)
T ss_dssp CEEEEEEETTEEEEEE-ECSSSBHHHHHHTTSCCTTSCCSSSSSSSCTTEEEE----------TTEEEEGGGSBGGGGTT
T ss_pred cceEEEEECCEEEEEe-cCCCCCHHHHHHHhcCCCccccccCCCCCCCCEEEE----------CCEEEEchhhhhhhhCC
Confidence 4789999999999997 899999999999999999999999999999999999 79999999999999999
Q ss_pred ceeEEecCCCCCCCCcchHhHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCcccc
Q 003040 91 CLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRC 170 (854)
Q Consensus 91 ~~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRC 170 (854)
++|+|||||++ ++.+||||+||+++|++|||||||||||++++||++ +|+| |++||+++|+||||||
T Consensus 72 ~~I~TiEgl~~-~~~l~pvq~af~~~~~~QCGfCtpG~ims~~all~~-----~~~p-------t~~eI~~al~GNlCRC 138 (160)
T 3hrd_D 72 STIITLEGVAE-DGKPSLLQQCFLEAGAVQCGYCTPGMILTAKALLDK-----NPDP-------TDEEITVAMSGNLCRC 138 (160)
T ss_dssp EEEECGGGTSB-TTBCCHHHHHHHHHTCCSSCSSHHHHHHHHHHHHTT-----CSSC-------CHHHHHHHHTTCCCSS
T ss_pred CceEEeCCCCC-CCccCHHHHHHHHcCCCcCCcchhhHHHHHHHHHHh-----CCCC-------CHHHHHHHHcCCCCCC
Confidence 99999999986 567999999999999999999999999999999944 4666 6999999999999999
Q ss_pred CCChhHHHHHHHhhhc
Q 003040 171 TGYRPIADACKSFAAD 186 (854)
Q Consensus 171 tgy~~i~~a~~~~~~~ 186 (854)
|||++|++|+++++..
T Consensus 139 tgY~~I~~Av~~aa~~ 154 (160)
T 3hrd_D 139 TGYIKIHAAVRYAVER 154 (160)
T ss_dssp SCSHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH
Confidence 9999999999998753
No 14
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C*
Probab=100.00 E-value=1.2e-52 Score=454.32 Aligned_cols=273 Identities=20% Similarity=0.267 Sum_probs=248.9
Q ss_pred CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceE-eecc-ccCceeeeCCCcccccceEecCCcEEecccccHHH
Q 003040 240 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGY-YKEV-EHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISK 317 (854)
Q Consensus 240 ~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~-~k~~-~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~ 317 (854)
.|+|++|+|++|++++++++ .+++++|+|||+|++ ++.+ ..+..+|||++|+||+.|+.++++|+|||++|+++
T Consensus 5 ~~~~~~P~s~~ea~~ll~~~----~~~~~ilaGGT~ll~~~~~~~~~~~~lIdl~~i~eL~~i~~~~~~l~iGA~~tl~~ 80 (287)
T 1ffv_C 5 RFEYHAPKSVGEAVALLGQL----GSDAKLLAGGHSLLPMMKLRFAQPEHLIDINRIPELRGIREEGSTVVIGAMTVEND 80 (287)
T ss_dssp CCEEECCSSHHHHHHHHHHH----GGGEEEESSCTTHHHHHHTTSCCCSEEEECTTCGGGCCEEEETTEEEEETTCBHHH
T ss_pred cceEECCCCHHHHHHHHHhc----CCCCEEEECchHHHHHHhcCCCCCCEEEECCCChhhcceEecCCEEEEccCCcHHH
Confidence 47999999999999999853 378999999999999 4665 57899999999999999999999999999999999
Q ss_pred HHHH--HHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCeeEE
Q 003040 318 AIEA--LKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEK 395 (854)
Q Consensus 318 l~~~--l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp~~~~sD~~~~LlAldA~v~l~s~~g~R~ 395 (854)
|.++ +++ .+|.|.++++++|++||||+|||||||++++|. +|++++|+||||+|++.+.+|.|+
T Consensus 81 l~~~~~~~~-----------~~~~L~~a~~~~a~~qiRN~gTvGGni~~~~~~---~D~~~~l~Al~A~v~~~~~~G~r~ 146 (287)
T 1ffv_C 81 LISSPIVQA-----------RLPLLAEAAKLIADPQVRNRGTIGGDIAHGDPG---NDHPALSIAVEAHFVLEGPNGRRT 146 (287)
T ss_dssp HHHCHHHHH-----------HCHHHHHHGGGSSCTTGGGTCBHHHHHHTCCTT---CSHHHHHHHTTCEEEEEETTEEEE
T ss_pred HhhChHHHH-----------HhHHHHHHHHHhCCHHHhcceechhhhccCCCc---HHHHHHHHHcCcEEEEEcCCceEE
Confidence 9963 432 489999999999999999999999999999998 999999999999999999999999
Q ss_pred Eehhhhhc---CCCCCCCceEEEEEcCCCCccCCcccCCCcceEEEEEEeccCCCCCccceeeeeEEEEEcCCCCCCCce
Q 003040 396 LMLEEFLE---RPPLDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIR 472 (854)
Q Consensus 396 vpl~dF~~---~~~L~~~Eii~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~d~a~v~~A~~v~~~~~~~~~~~~ 472 (854)
+|++|||. ++.|+++|||++|.||.+.. +..+.++|+. | +..|||+||+|+.++++ +++
T Consensus 147 i~~~df~~g~~~t~l~~~eii~~i~ip~~~~----------~~~~~~~k~~-r-r~~d~a~v~~a~~~~~~------~~~ 208 (287)
T 1ffv_C 147 VPADGFFLGTYMTLLEENEVMVEIRVPAFAQ----------GTGWAYEKLK-R-KTGDWATAGCAVVMRKS------GNT 208 (287)
T ss_dssp EESTTTEEETTEESCCTTCEEEEEEEECCCT----------TCEEEEEEEC-S-STTSCCSEEEEEEEEEE------TTE
T ss_pred EEHHHHhcCcccccCCCCCEEEEEEecCCCC----------CCceEEEEEC-C-cccchhheEEEEEEEEc------CCe
Confidence 99999997 46899999999999998764 3445566766 5 45699999999999996 368
Q ss_pred eeeeEEEEcccCCCcceeHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCCCCCC-CCHHHHhHHHHHHHHHHHHHHhhh
Q 003040 473 VNNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGT-SIPAYRSSLAVGFLYEFFGSLTEM 549 (854)
Q Consensus 473 i~~~ria~Ggv~~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~~~~p~~d~-~s~eYRr~la~~L~~r~l~~~~~~ 549 (854)
|+++||+|||++++ |+|++++|++|.||+|+++++++|++.+.+++.|.+|. +|++||++|+++|++|+|.++.++
T Consensus 209 i~~~ria~Ggv~~~-p~ra~~~E~~L~G~~~~~~~~~~a~~~~~~~~~p~~d~r~s~~YR~~l~~~l~~r~l~~~~~~ 285 (287)
T 1ffv_C 209 VSHIRIALTNVAPT-ALRAEAAEAALLGKAFTKEAVQAAADAAIAICEPAEDLRGDADYKTAMAGQMVKRALNAAWAR 285 (287)
T ss_dssp EEEEEEEEESSSSS-CEECHHHHHTTBTSBCCHHHHHHHHHHHHHTCCCCCBTTBCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEcccCC-cccCHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999 99999999999999999999999999999999999987 599999999999999999998765
No 15
>3nvz_C Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3ns1_C* 3etr_C* 3nvv_C* 3nvw_C* 3nrz_C* 3nvy_C* 3eub_C* 3b9j_C* 1fiq_C* 3rca_C* 3sr6_C*
Probab=100.00 E-value=1.1e-52 Score=506.74 Aligned_cols=235 Identities=36% Similarity=0.627 Sum_probs=215.5
Q ss_pred cCCCCcccccccccccccceeccccCCCCCCcEEEEEEecCCCCceeccCCCCccCCCCCEEEEEEcCCCCCCCCCCCcc
Q 003040 602 YPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNIGSK 681 (854)
Q Consensus 602 ~~iGk~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~~ID~s~A~~~PGVv~v~t~~Dip~~g~n~~~~ 681 (854)
++|||+++|+|+..||||+++|++|++.+|||||++++|||++||+|++||+++|++||||++|+|++|+| +.|.. .
T Consensus 1 ~~iG~~~~R~d~~~kvtG~a~Y~~Di~~~pgmL~a~~vrSp~aha~I~siD~s~A~~~pGV~~V~t~~d~p--~~~~~-g 77 (755)
T 3nvz_C 1 DTVGRPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPGFVCFLSADDIP--GSNET-G 77 (755)
T ss_dssp CCTTSCCCCTTHHHHHHTCSCCGGGSCCBTTCEEEEEEECSSSSEEEEEEECTTGGGSTTEEEEECGGGCS--SCSEE-S
T ss_pred CCCCCCCcCcchHHhcccccccccccCCCCCcEEEEEEECCCCCeEEEEeehHHHhcCCCeEEEEEcCCCC--ccccC-C
Confidence 57999999999999999999999999745899999999999999999999999999999999999999999 55531 1
Q ss_pred ccCCCcccccCCceeecCCeEEEEEeCCHHHHHHhccccEEEEecCCCCCCcCCHHHHHhcCCCCcCCCcccCCCCCChh
Q 003040 682 TIFGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDIS 761 (854)
Q Consensus 682 ~~~~d~p~~a~~~V~y~GqpIa~VvAet~~~A~~Aa~~V~V~y~~e~l~p~v~~~~~Al~~~~~~~~~~~~~~~~~Gd~~ 761 (854)
...++|+|++++|+|+||||++|||+|+|+|++|+++|+|+| |++ |+++|+++|+++++++.. . .....||++
T Consensus 78 -~~~~~~~la~~~Vry~Gq~Va~VvA~t~~~A~~Aa~~v~Vey--e~l-p~v~~~~~a~~~~~~~~~-~--~~~~~Gd~~ 150 (755)
T 3nvz_C 78 -LFNDETVFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKVTY--EDL-PAIITIEDAIKNNSFYGS-E--LKIEKGDLK 150 (755)
T ss_dssp -TTSCEESSCCSEECSTTCEEEEEEESSHHHHHHHHHTCEEEE--EEC-CCCCSHHHHHHTTCEEEE-E--EEEEESCHH
T ss_pred -CCCCcccccCCeEEEcCCeEEEEEECCHHHHHHHhcccceEE--EcC-CCCCCHHHHhhccCccCC-C--cccccCCHh
Confidence 346899999999999999999999999999999999999999 888 899999999988764321 1 135789999
Q ss_pred hhcccCCeeEEEEEEEECccccCCCCCCeEEEEEC-CCCcEEEEeCCCChHHHHHHHHHHhCCCCCCEEEEeCCcCCCCC
Q 003040 762 KGMNEADHRILAAEIKLGSQYYFYMETQTALAVPD-EDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFG 840 (854)
Q Consensus 762 ~a~~~a~~~vve~~~~~~~q~H~~mEp~~a~A~~~-~dg~l~V~~stQ~p~~~~~~vA~~Lglp~~kV~V~~~~~GGgFG 840 (854)
++|++|+++ ||++|++++|+|+||||++|+|+|+ ++|+|+||+|||+|+.+|..+|++||||++||||+++++|||||
T Consensus 151 ~a~a~A~~v-ve~~y~~~~~~h~~mEp~~~~A~~~~~~g~l~v~~stQ~p~~~r~~lA~~Lglp~~~VrV~~~~vGGgFG 229 (755)
T 3nvz_C 151 KGFSEADNV-VSGELYIGGQDHFYLETHCTIAIPKGEEGEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFG 229 (755)
T ss_dssp HHHHHCSEE-EEEEEEECCBCCCCSSCCEEEEEECSSTTCEEEEECCSCHHHHHHHHHHHHTCCGGGEEEEECCCSCCTT
T ss_pred HHhhcCCeE-EEEEEEeCCccccCCCCceEEEEEeCCCCeEEEEECCCCHHHHHHHHHHHHCCCCccEEEEECCCCCCCC
Confidence 999999985 9999999999999999999999998 67799999999999999999999999999999999999999999
Q ss_pred CCCCCcH
Q 003040 841 GKAIKAM 847 (854)
Q Consensus 841 gK~~~~~ 847 (854)
+|.+...
T Consensus 230 ~K~~~~~ 236 (755)
T 3nvz_C 230 GKETRST 236 (755)
T ss_dssp TTSSTTH
T ss_pred Ccccccc
Confidence 9998653
No 16
>1rm6_A 4-hydroxybenzoyl-COA reductase alpha subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.41.1.1 d.133.1.1 PDB: 1sb3_A*
Probab=100.00 E-value=2.7e-52 Score=505.20 Aligned_cols=240 Identities=25% Similarity=0.348 Sum_probs=216.7
Q ss_pred cCCcCCCCcccccccccccccceeccccCCCCCCcEEEEEEecCCCCceeccCCCCccCCCCCEEEEEEcCCCCCCCCCC
Q 003040 599 REYYPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNI 678 (854)
Q Consensus 599 ~~~~~iGk~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~~ID~s~A~~~PGVv~v~t~~Dip~~g~n~ 678 (854)
+++++|||+++|+|+..||||+++|++|+. +|||||++++|||++||+|++||+++|+++|||++|+|++|+| + |.
T Consensus 6 ~~~~~iG~~~~R~d~~~kvtG~a~Y~~D~~-~~gmL~a~~vrSp~aharI~siD~s~A~~~pGV~~V~t~~Dip--~-~~ 81 (769)
T 1rm6_A 6 PQHGTVGVRTPLVDGVEKVTGKAKYTADIA-APDALVGRILRSPHAHARILAIDTSAAEALEGVIAVCTGAETP--V-PF 81 (769)
T ss_dssp ---CCTTSCCCCTTHHHHHHTCCCBGGGCC-CTTCEEEEEEECSSSSEEEEEEECHHHHHSTTEEEEEEGGGCC--S-CB
T ss_pred cccCcCCCCCcCcchHHhccceeeehhccC-CCCCEEEEEEECCCCCeEEEeeehhHHhcCCCeEEEEehHHcC--C-cc
Confidence 457889999999999999999999999996 8999999999999999999999999999999999999999999 4 43
Q ss_pred CccccCCCcccccCCceeecCCeEEEEEeCCHHHHHHhccccEEEEecCCCCCCcCCHHHHHhcCCC--CcC-CCcc---
Q 003040 679 GSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSSL--FEV-PSFL--- 752 (854)
Q Consensus 679 ~~~~~~~d~p~~a~~~V~y~GqpIa~VvAet~~~A~~Aa~~V~V~y~~e~l~p~v~~~~~Al~~~~~--~~~-~~~~--- 752 (854)
+......++|+|++++|+|+|||||+|||+|+|+|++|+++|+|+| |++ |+++|+++|++++++ |+. +.|+
T Consensus 82 g~~~~~~~~~~la~~~Vry~Gq~VA~VvA~t~~~A~~A~~~v~Vey--e~l-p~v~~~~~al~~~a~~~~~~~~~n~~~~ 158 (769)
T 1rm6_A 82 GVLPIAENEYPLARDKVRYRGDPVAAVAAIDEVTAEKALALIKVDY--EVL-PAYMTPKAAMKAGAIALHDDKPNNILRE 158 (769)
T ss_dssp CSSTTCCCBCSSCSSEECSTTCEEEEEEESSHHHHHHHHHHCEEEE--EEC-CCCCSHHHHHSTTCCCSSTTCTTSEEEE
T ss_pred CCCCCCCCcccccCCEEEEcCCeEEEEEECCHHHHHHHhCCCeEEE--eeC-CCCCCHHHHhccCCceeccCCCCccccc
Confidence 3211146889999999999999999999999999999999999999 888 899999999998874 432 1343
Q ss_pred cCCCCCChhhhcccCCeeEEEEEEEECccccCCCCCCeEEEEECC-CCcEEEEeCCCChHHHHHHHHHHhCCCCCCEEEE
Q 003040 753 YPKPVGDISKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPDE-DNCLVVYSSIQCPESAHATIARCLGIPEHNVRVI 831 (854)
Q Consensus 753 ~~~~~Gd~~~a~~~a~~~vve~~~~~~~q~H~~mEp~~a~A~~~~-dg~l~V~~stQ~p~~~~~~vA~~Lglp~~kV~V~ 831 (854)
.....||++++|++|+++ ||++|++++|+|+||||++|+|+|++ ||+|+||+|||+|+.+|..+|++||||++||||+
T Consensus 159 ~~~~~Gd~~~a~a~A~~v-ve~~y~~~~~~h~~mEp~~~~A~~~~~~g~l~v~~stQ~p~~~r~~~A~~Lglp~~~VrV~ 237 (769)
T 1rm6_A 159 VHAEFGDVAAAFAEADLI-REKTYTFAEVNHVHMELNATLAEYDPVRDMLTLNTTTQVPYYVHLKVAACLQMDSARIRVI 237 (769)
T ss_dssp EEEEESCHHHHHHTCSEE-EEEEEEECCBCCCCSSCCEEEEEEETTTTEEEEEECCSCHHHHHHHHHHHHTCCGGGEEEE
T ss_pred cccccCChhhhhccCCEE-EEEEEEECCccccCCCCceEEEEEeCCCCeEEEEECCcCHHHHHHHHHHHhCCCHHHEEEE
Confidence 224689999999999985 99999999999999999999999997 6799999999999999999999999999999999
Q ss_pred eCCcCCCCCCCCCCc
Q 003040 832 TRRVGGAFGGKAIKA 846 (854)
Q Consensus 832 ~~~~GGgFGgK~~~~ 846 (854)
++++|||||+|.+..
T Consensus 238 ~~~vGGgFG~K~~~~ 252 (769)
T 1rm6_A 238 KPFLGGGFGARTEAL 252 (769)
T ss_dssp CCBCCCCTTTTSSCC
T ss_pred eCCCCCCCCCccccc
Confidence 999999999999887
No 17
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=100.00 E-value=8.8e-52 Score=407.33 Aligned_cols=152 Identities=38% Similarity=0.727 Sum_probs=143.2
Q ss_pred eeEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccC
Q 003040 11 RHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNG 90 (854)
Q Consensus 11 ~~~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g 90 (854)
.++|+|+|||+.++++ ++|+++|||+||+.++++|+|.||++|.||||||+| ||++|+||++|+.+++|
T Consensus 3 ~~~i~~~vNG~~~~~~-v~~~~tLLd~LR~~lgltg~k~gC~~G~CGaCtV~v----------dG~~v~sC~~~~~~~~G 71 (163)
T 1ffv_A 3 KKIITVNVNGKAQEKA-VEPRTLLIHFLREELNLTGAHIGCETSHCGACTVDI----------DGRSVKSCTHLAVQCDG 71 (163)
T ss_dssp CEEEEEEETTEEEEEE-ECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEE----------TTEEEEGGGSBGGGGTT
T ss_pred CceEEEEECCEEEEEe-cCCCCcHHHHHHhcCCCcccccCCCCCCCCCCEEEE----------CCcEecchHhhHHHhCC
Confidence 3589999999999997 899999999999999999999999999999999999 79999999999999999
Q ss_pred ceeEEecCCCCCCCCcchHhHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCcccc
Q 003040 91 CLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRC 170 (854)
Q Consensus 91 ~~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRC 170 (854)
++|+|||||++ .+.+||+|++|+++|++|||||||||||++++||+++ |+| |++||+++|+||||||
T Consensus 72 ~~I~TiEgL~~-~~~l~pvq~a~~~~~~~QCG~CtpG~imsa~all~~~-----~~p-------t~~ei~~~l~gnlCRC 138 (163)
T 1ffv_A 72 SEVLTVEGLAN-KGVLHAVQEGFYKEHGLQCGFCTPGMLMRAYRFLQEN-----PNP-------TEAEIRMGMTGNLCRC 138 (163)
T ss_dssp CEEECGGGTSB-TTBCCHHHHHHHHTTCCSSCSSHHHHHHHHHHHHHHC-----SSC-------CHHHHHHHTTTCCCSS
T ss_pred ceEEEECCCCC-CCCcCHHHHHHHHhCCccCccccHhHHHHHHHHHHcC-----CCC-------CHHHHHHHHcCCccCC
Confidence 99999999986 6789999999999999999999999999999999653 555 6999999999999999
Q ss_pred CCChhHHHHHHHhhhc
Q 003040 171 TGYRPIADACKSFAAD 186 (854)
Q Consensus 171 tgy~~i~~a~~~~~~~ 186 (854)
|||++|++|++.++..
T Consensus 139 tgY~~I~~Av~~~a~~ 154 (163)
T 1ffv_A 139 TGYQNIVKAVQYAARK 154 (163)
T ss_dssp SCSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999998753
No 18
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=100.00 E-value=1.2e-51 Score=407.54 Aligned_cols=153 Identities=37% Similarity=0.723 Sum_probs=143.3
Q ss_pred eeEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccC
Q 003040 11 RHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNG 90 (854)
Q Consensus 11 ~~~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g 90 (854)
.|+|+|+|||+.++++ ++|+++|||+||+.++++|+|.||++|.||||||+| ||++|+||++|+.+++|
T Consensus 3 ~~~i~~~vNG~~~~~~-v~~~~tLLd~LR~~lgl~g~k~gC~~G~CGaCtV~v----------dG~~v~SC~~~~~~~~G 71 (166)
T 1n62_A 3 KAHIELTINGHPVEAL-VEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDL----------DGMSVKSCTMFAVQANG 71 (166)
T ss_dssp CEEEEEEETTEEEEEE-ECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEE----------TTEEEEGGGSBGGGGTT
T ss_pred CceEEEEECCEEEEEe-cCCCCcHHHHHHHcCCCCccccCCCCCCCCCCEEEE----------CCcEEechhhhHHHhCC
Confidence 4689999999999997 899999999999999999999999999999999999 79999999999999999
Q ss_pred ceeEEecCCCCCCCCcchHhHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCcccc
Q 003040 91 CLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRC 170 (854)
Q Consensus 91 ~~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRC 170 (854)
++|+|||||++.++.+||+|++|+++|++|||||||||||++++||+++ |+| |++||+++|+||||||
T Consensus 72 ~~V~TiEgL~~~~~~~~pvq~a~~~~~~~QCG~CtpG~imsa~all~~~-----~~p-------t~~eI~~~l~gNlCRC 139 (166)
T 1n62_A 72 ASITTIEGMAAPDGTLSALQEGFRMMHGLQCGYCTPGMIMRSHRLLQEN-----PSP-------TEAEIRFGIGGNLCRC 139 (166)
T ss_dssp CEEECGGGSSCTTSCCCHHHHHHHHTTCCSSCSSHHHHHHHHHHHHHHC-----SSC-------CHHHHHHHTTTCCCSS
T ss_pred ceEEEeCCCCCcCCccCHHHHHHHHcCCccCCccchhHHHHHHHHHHcC-----CCC-------CHHHHHHHHcCCccCC
Confidence 9999999998535689999999999999999999999999999999653 555 6999999999999999
Q ss_pred CCChhHHHHHHHhhhc
Q 003040 171 TGYRPIADACKSFAAD 186 (854)
Q Consensus 171 tgy~~i~~a~~~~~~~ 186 (854)
|||++|++|++.++..
T Consensus 140 tgY~~I~~Av~~~a~~ 155 (166)
T 1n62_A 140 TGYQNIVKAIQYAAAK 155 (166)
T ss_dssp STTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999998753
No 19
>2w3s_B Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 1jrp_B* 2w3r_B* 1jro_B* 2w54_B* 2w55_B*
Probab=100.00 E-value=2.5e-51 Score=496.72 Aligned_cols=235 Identities=34% Similarity=0.519 Sum_probs=212.7
Q ss_pred CCCCcccccccccccccceeccccCCCCCCcEEEEEEecCCCCceeccCCCCccCCCCCEEEEEEcCCCCCCCCCCCccc
Q 003040 603 PVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNIGSKT 682 (854)
Q Consensus 603 ~iGk~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~~ID~s~A~~~PGVv~v~t~~Dip~~g~n~~~~~ 682 (854)
+|||+++|+|+..||||+++|++|++.+|||||++++|||++||+|++||+++|+++|||++|+|++|+| +.|. ...
T Consensus 2 ~iG~~~~R~d~~~kvtG~a~Y~~D~~~~~gmL~a~~vrSp~a~a~I~siD~s~A~~~pGV~~V~t~~d~p--~~~~-~g~ 78 (777)
T 2w3s_B 2 SVGKPLPHDSARAHVTGQARYLDDLPCPANTLHLAFGLSTEASAAITGLDLEPVRESPGVIAVFTAADLP--HDND-ASP 78 (777)
T ss_dssp CTTSCCCCTTHHHHHHTCCCCGGGSCCCTTCEEEEEEECSCSSEEEEEEECHHHHTSTTEEEEEEGGGCS--SCCC-CCS
T ss_pred CCCCCCCCcchHHhccccceeccccCCCCCCEEEEEEECCCCCeEEEEeEhHHHhcCCCcEEEEEcccCC--Cccc-CCC
Confidence 5899999999999999999999999547999999999999999999999999999999999999999999 4442 122
Q ss_pred cCCCcccccCCceeecCCeEEEEEeCCHHHHHHhccccEEEEecCCCCCCcCCHHHHHhcCCCCcCCCcccCCCCCChhh
Q 003040 683 IFGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISK 762 (854)
Q Consensus 683 ~~~d~p~~a~~~V~y~GqpIa~VvAet~~~A~~Aa~~V~V~y~~e~l~p~v~~~~~Al~~~~~~~~~~~~~~~~~Gd~~~ 762 (854)
...++|+|++++|+|+||||++|||+|+|+|++|+++|+|+| |++ |+++|+++|++++..+.... .....||+++
T Consensus 79 ~~~~~~~la~~~Vry~GqpVa~VvA~t~~~A~~Aa~~v~V~y--e~l-p~v~~~~~a~~~~~~~~~~~--~~~~~Gd~~~ 153 (777)
T 2w3s_B 79 APSPEPVLATGEVHFVGQPIFLVAATSHRAARIAARKARITY--APR-PAILTLDQALAADSRFEGGP--VIWARGDVET 153 (777)
T ss_dssp SSSCCCSSCCSEECSTTCEEEEEEESSHHHHHHHHTTCEEEE--EEC-CCCCSHHHHHHHTCBSSSSC--EEEEESCHHH
T ss_pred CCCCcccccCceEEecCCeEEEEEECCHHHHHHHhcceEEEE--EcC-CCCCCHHHHhhccCccccCc--cccccCChhH
Confidence 346899999999999999999999999999999999999999 888 88999999998743211111 1346899999
Q ss_pred hcccCCeeEEEEEEEECccccCCCCCCeEEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCCCEEEEeCCcCCCCCCC
Q 003040 763 GMNEADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGGK 842 (854)
Q Consensus 763 a~~~a~~~vve~~~~~~~q~H~~mEp~~a~A~~~~dg~l~V~~stQ~p~~~~~~vA~~Lglp~~kV~V~~~~~GGgFGgK 842 (854)
+|++|+++ ||++|++++|+|+||||++|+|+|++|| |+||+|||+|+.+|..+|++||||++||||+++++|||||+|
T Consensus 154 a~a~A~~v-ve~~y~~~~~~h~~mEp~~~~A~~~~~~-l~v~~stQ~p~~~r~~vA~~Lglp~~~VrV~~~~vGGgFG~K 231 (777)
T 2w3s_B 154 ALAGAAHL-AEGCFEIGGQEHFYLEGQAALALPAEGG-VVIHCSSQHPSEIQHKVAHALGLAFHDVRVEMRRMGGGFGGK 231 (777)
T ss_dssp HHHTCSEE-EEEEEEECCCCCCCSSCCEEEEEEETTE-EEEEESCSCHHHHHHHHHHHHTCCGGGEEEEECCCSCCTTTT
T ss_pred HhhcCCeE-EEEEEEECCccccCCcCCeEEEEEECCc-cEEEECCcCHHHHHHHHHHHHCCCHHHEEEEeCCCCCCCCcC
Confidence 99999986 9999999999999999999999999776 999999999999999999999999999999999999999999
Q ss_pred CCCcH
Q 003040 843 AIKAM 847 (854)
Q Consensus 843 ~~~~~ 847 (854)
.+...
T Consensus 232 ~~~~~ 236 (777)
T 2w3s_B 232 ESQGN 236 (777)
T ss_dssp TTTTH
T ss_pred ccccc
Confidence 97663
No 20
>1t3q_B Quinoline 2-oxidoreductase large subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.41.1.1 d.133.1.1
Probab=100.00 E-value=2e-51 Score=498.72 Aligned_cols=238 Identities=24% Similarity=0.305 Sum_probs=213.6
Q ss_pred CCCCcccccccccccccceeccccCCCCCCcEEEEEEecCCCCceeccCCCCccCCCCCEEEEEEcCCCCCCCCC--CCc
Q 003040 603 PVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQN--IGS 680 (854)
Q Consensus 603 ~iGk~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~~ID~s~A~~~PGVv~v~t~~Dip~~g~n--~~~ 680 (854)
.|||+++|+|+..||||+++|++|+. +|||||++++|||++||+|++||+++|+++|||++|+|++|+| +.| .+.
T Consensus 13 ~iG~~~~R~d~~~kvtG~a~Y~~D~~-~pgmL~a~~vrSp~aharI~sID~s~A~~~pGV~~V~t~~D~p--~~~~~~~~ 89 (788)
T 1t3q_B 13 SIGTSVLRREDTRLLTGRGRYIADLV-LSGMLHVASLRSPFAHARIVSIDVADAQALPGVELVWCGADVA--ELSQGIVA 89 (788)
T ss_dssp STTSCCCCTTHHHHHTTCCCBGGGCC-CTTCEEEEEEECSSSSEEEEEEECHHHHHSTTEEEEEEHHHHH--TTCCCEEE
T ss_pred cCCCCCcCcchHHhCccceecccccC-CCCCEEEEEEecCCCCEEEEEeEhHHHhhCCCeEEEEeHHHCc--ccccccCc
Confidence 69999999999999999999999996 8999999999999999999999999999999999999999998 443 211
Q ss_pred ccc-----CCCcccccCCceeecCCeEEEEEeCCHHHHHHhccccEEEEecCCCCCCcCCHHHHHhcCC-CCcC-CCcc-
Q 003040 681 KTI-----FGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSS-LFEV-PSFL- 752 (854)
Q Consensus 681 ~~~-----~~d~p~~a~~~V~y~GqpIa~VvAet~~~A~~Aa~~V~V~y~~e~l~p~v~~~~~Al~~~~-~~~~-~~~~- 752 (854)
... ..+.|+|++++|+|+|||||+|||+|+|+|++|+++|+|+| |++ |+++|+++|+++++ +|+. +.|+
T Consensus 90 ~~~~~~~~~~~~~~la~~~Vry~Gq~VA~VvA~t~~~A~~Aa~~v~Vey--e~l-p~v~~~~~Al~~~a~i~~~~~~n~~ 166 (788)
T 1t3q_B 90 TMQVEGFQTTIQPLLANGVTRFVGEIVAVVVASSRAIAEDAAQLIQVEY--EEL-PAVTGIEAALEGEARANDTLAGNVV 166 (788)
T ss_dssp CCSSTTCCCEEECSSCCSEECSTTCEEEEEEESSHHHHHHHHTTCEEEE--EEC-CCCCSHHHHHHCSCCSCTTSSSSEE
T ss_pred ccccccccCCccccccCCeEEEcCCeEEEEEECCHHHHHHHhCCCeEEE--eeC-CCcCCHHHHhhccCcccCCCCCccc
Confidence 001 12347799999999999999999999999999999999999 888 89999999998876 3432 2343
Q ss_pred --cCCCCCChhhhcccCCeeEEEEEEEECccccCCCCCCeEEEEECC-CCcEEEEeCCCChHHHHHHHHHHhCCCCCCEE
Q 003040 753 --YPKPVGDISKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPDE-DNCLVVYSSIQCPESAHATIARCLGIPEHNVR 829 (854)
Q Consensus 753 --~~~~~Gd~~~a~~~a~~~vve~~~~~~~q~H~~mEp~~a~A~~~~-dg~l~V~~stQ~p~~~~~~vA~~Lglp~~kV~ 829 (854)
.....||++++|++|+++ ||++|++++|+|+||||++|+|+|++ ||+|+||+|||+|+.+|..+|++||||++|||
T Consensus 167 ~~~~~~~Gd~~~afa~A~~v-ve~~y~~~~~~h~~mEp~~~~A~~~~~~g~l~v~~stQ~p~~~r~~lA~~Lglp~~~Vr 245 (788)
T 1t3q_B 167 SRTSRARDELAPIFASSAGV-VRGQFSCGRVSACPMETRGAVAQYEWTTQQLILWTATQMPSFVRTMVAMFCAIPEHLIE 245 (788)
T ss_dssp EEEEEEECCCHHHHHHSSEE-EEEEEEECBBCCCCSSCCEEEEEEETTTTEEEEEECCSCHHHHHHHHHHHHTCCGGGEE
T ss_pred cccccccCChhhhhccCCcE-EEEEEEECCEeccCCCCceEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHCCChHHEE
Confidence 124689999999999985 99999999999999999999999996 67999999999999999999999999999999
Q ss_pred EEeCCcCCCCCCCCCCcH
Q 003040 830 VITRRVGGAFGGKAIKAM 847 (854)
Q Consensus 830 V~~~~~GGgFGgK~~~~~ 847 (854)
|+++++|||||+|.+...
T Consensus 246 V~~~~vGGgFG~K~~~~~ 263 (788)
T 1t3q_B 246 VRVPDVGGGFGQKAHLHP 263 (788)
T ss_dssp EECCBCSCCTTTTSSCCH
T ss_pred EEeCCCCCCCCCCCccch
Confidence 999999999999998875
No 21
>1ffv_B CUTL, molybdoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.41.1.1 d.133.1.1 PDB: 1ffu_B*
Probab=100.00 E-value=4e-51 Score=496.47 Aligned_cols=240 Identities=23% Similarity=0.242 Sum_probs=214.1
Q ss_pred CcCCCCcccccccccccccceeccccCCCCCCcEEEEEEecCCCCceeccCCCCccCCCCCEEEEEEcCCCCCCCCCCCc
Q 003040 601 YYPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNIGS 680 (854)
Q Consensus 601 ~~~iGk~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~~ID~s~A~~~PGVv~v~t~~Dip~~g~n~~~ 680 (854)
++.|||+++|+|+..||||+++|++|++ +|||||++++|||++||+|++||+++|+++|||++|+|++|+| +.+.+.
T Consensus 15 ~~~iG~~~~R~d~~~kvtG~a~Y~~D~~-~pgmL~a~~vrSp~aharI~sID~s~A~~~PGV~~V~t~~D~p--~~~~~~ 91 (803)
T 1ffv_B 15 LAGMGASRLRKEDARFIQGKGNYVDDIK-MPGMLHMDIVRAPIAHGRIKKIHKDAALAMPGVHAVLTAEDLK--PLKLHW 91 (803)
T ss_dssp HTCTTCCCCCSSHHHHTTTCCCCGGGCC-CTTCEEEEEEECSSSSEEEEEEECHHHHHSTTEEEEECHHHHG--GGTCSE
T ss_pred hccCCCCCcCcChHhhcccceecccccC-CCCCEEEEEEeCCCCCeEEEEeehHHHhcCCCeEEEEehhhcc--Cccccc
Confidence 3569999999999999999999999997 7999999999999999999999999999999999999999998 332221
Q ss_pred cc--cCCCcccccCCceeecCCeEEEEEeCCHHHHHHhccccEEEEecCCCCCCcCCHHHHHhcCC--CCcC-CC-----
Q 003040 681 KT--IFGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSS--LFEV-PS----- 750 (854)
Q Consensus 681 ~~--~~~d~p~~a~~~V~y~GqpIa~VvAet~~~A~~Aa~~V~V~y~~e~l~p~v~~~~~Al~~~~--~~~~-~~----- 750 (854)
.. ...++|+|++++|+|+|||||+|||+|+|+|++|+++|+|+| |++ |+++|+++|+++++ +|+. +.
T Consensus 92 ~~~~~~~~~~~la~~~Vry~Gq~VA~VvA~t~~~A~~Aa~~v~Vey--e~l-p~v~~~~~Al~~~a~~i~~~~~~~~~~~ 168 (803)
T 1ffv_B 92 MPTLAGDVAAVLADEKVHFQMQEVAIVIADDRYIAADAVEAVKVEY--DEL-PVVIDPIDALKPDAPVLREDLAGKTSGA 168 (803)
T ss_dssp EECTTSCEEESSCCSEECSTTCEEEEEEESSHHHHHHHHHHCEEEE--EEC-CCCCCHHHHTSTTCCCSCGGGTTCCEET
T ss_pred ccccCCCccccccCceEEEcCCcEEEEEECCHHHHHHHhcCCEEEE--eeC-CccCCHHHHhhcCCceeccccccccccc
Confidence 10 123678999999999999999999999999999999999999 888 89999999999876 3432 11
Q ss_pred -------cc---cCCCC-CChhhhcccCCeeEEEEEEEECccccCCCCCCeEEEEECC-CCcEEEEeCCCChHHHHHHHH
Q 003040 751 -------FL---YPKPV-GDISKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPDE-DNCLVVYSSIQCPESAHATIA 818 (854)
Q Consensus 751 -------~~---~~~~~-Gd~~~a~~~a~~~vve~~~~~~~q~H~~mEp~~a~A~~~~-dg~l~V~~stQ~p~~~~~~vA 818 (854)
|+ ..... ||++++|++|+++ ||++|++++|+|+||||++|+|+|++ ||+|+||+|||+|+.+|..+|
T Consensus 169 ~~~~~~~n~~~~~~~~~~Gd~~~afa~A~~v-ve~~y~~~~~~h~~mEp~~~~A~~~~~~g~l~v~~stQ~p~~~r~~lA 247 (803)
T 1ffv_B 169 HGPREHHNHIFTWGAGDKAATDAVFANAPVT-VSQHMYYPRVHPCPLETCGCVASFDPIKGDLTTYITSQAPHVVRTVVS 247 (803)
T ss_dssp TEECSSTTEEEEEEEECHHHHHHHHHHCSEE-EEEEEEECCBCCCCSSCCEEEEEEETTTTEEEEEECCSCHHHHHHHHH
T ss_pred ccccccccccccccccccCChhhhhccCCEE-EEEEEEECCEeccCCCCceEEEEEeCCCceEEEEECCCCHHHHHHHHH
Confidence 32 12357 9999999999985 99999999999999999999999995 679999999999999999999
Q ss_pred HHhCCCCCCEEEEeCCcCCCCCCCCCCcH
Q 003040 819 RCLGIPEHNVRVITRRVGGAFGGKAIKAM 847 (854)
Q Consensus 819 ~~Lglp~~kV~V~~~~~GGgFGgK~~~~~ 847 (854)
++||||++||||+++++|||||+|.....
T Consensus 248 ~~Lglp~~~VrV~~~~vGGgFG~K~~~~~ 276 (803)
T 1ffv_B 248 MLSGIPESKVRIVSPDIGGGFGNKVGIYP 276 (803)
T ss_dssp HHHCCCGGGEEEECCCCSCCTTTTSSCCH
T ss_pred HHhCCCHHHEEEEeCCCCCCCCccccccH
Confidence 99999999999999999999999988643
No 22
>1n62_B Carbon monoxide dehydrogenase large chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.41.1.1 d.133.1.1 PDB: 1n5w_B* 1n61_B* 1n60_B* 1n63_B* 1zxi_B*
Probab=100.00 E-value=4.5e-51 Score=496.82 Aligned_cols=239 Identities=25% Similarity=0.296 Sum_probs=214.0
Q ss_pred cCCCCcccccccccccccceeccccCCCCCCcEEEEEEecCCCCceeccCCCCccCCCCCEEEEEEcCCCCCCCCCCCcc
Q 003040 602 YPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNIGSK 681 (854)
Q Consensus 602 ~~iGk~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~~ID~s~A~~~PGVv~v~t~~Dip~~g~n~~~~ 681 (854)
+.|||+++|+|+..||||+++|++|++ +|||||++++|||++||+|++||+++|++||||++|+|++|+| +.|....
T Consensus 19 ~~iG~~~~R~d~~~kvtG~a~Y~~D~~-~pgmL~a~~vrSp~aha~I~sID~s~A~~~PGV~~V~t~~D~p--~~~~~~~ 95 (809)
T 1n62_B 19 QGMGCKRKRVEDIRFTQGKGNYVDDVK-LPGMLFGDFVRSSHAHARIKSIDTSKAKALPGVFAVLTAADLK--PLNLHYM 95 (809)
T ss_dssp TCTTCCCCCTHHHHHTTTCCCBGGGCC-CTTCEEEEEEECSCSSEEEEEEECHHHHHSTTEEEEEEHHHHG--GGTCSEE
T ss_pred ccCCCCCcCcchHHhccceeeehhhcC-CCCCEEEEEEeCCCCceEEEecchHHHhhCCCeEEEEEhHHcc--ccccccc
Confidence 459999999999999999999999997 7999999999999999999999999999999999999999998 4442111
Q ss_pred c--cCCCcccccCCceeecCCeEEEEEeCCHHHHHHhccccEEEEecCCCCCCcCCHHHHHhcCC--CCcC-CC------
Q 003040 682 T--IFGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSS--LFEV-PS------ 750 (854)
Q Consensus 682 ~--~~~d~p~~a~~~V~y~GqpIa~VvAet~~~A~~Aa~~V~V~y~~e~l~p~v~~~~~Al~~~~--~~~~-~~------ 750 (854)
. ...++|+|++++|+|+|||||+|||+|+|+|++|+++|+|+| |++ |+++|+++|+++++ +|+. +.
T Consensus 96 ~~~~~~~~~~la~~~Vry~Gq~VA~VvA~t~~~A~~Aa~~v~Vey--e~l-p~v~~~~~Al~~~a~~i~~~~~~~~~~~~ 172 (809)
T 1n62_B 96 PTLAGDVQAVLADEKVLFQNQEVAFVVAKDRYVAADAIELVEVDY--EPL-PVLVDPFKAMEPDAPLLREDIKDKMTGAH 172 (809)
T ss_dssp ECTTSSEEESSCSSEECSTTCEEEEEEESSHHHHHHHHHHCEEEE--EEC-CCCCCGGGTTSTTCCCCCGGGTTCCEETT
T ss_pred cccCCCCcccccCceEEEcCCcEEEEEECCHHHHHHHhCcceEEE--EeC-CCcCCHHHHhhcCCceecccccccccccc
Confidence 1 124679999999999999999999999999999999999999 888 89999999998876 3442 11
Q ss_pred ------cc---cCCCC-CChhhhcccCCeeEEEEEEEECccccCCCCCCeEEEEECC-CCcEEEEeCCCChHHHHHHHHH
Q 003040 751 ------FL---YPKPV-GDISKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPDE-DNCLVVYSSIQCPESAHATIAR 819 (854)
Q Consensus 751 ------~~---~~~~~-Gd~~~a~~~a~~~vve~~~~~~~q~H~~mEp~~a~A~~~~-dg~l~V~~stQ~p~~~~~~vA~ 819 (854)
|+ ..... ||++++|++|+++ ||++|++++|+|+||||++|+|+|++ ||+|+||+|||+|+.+|..+|+
T Consensus 173 ~~~~~~n~~~~~~~~~~Gd~~~afa~A~~v-ve~~y~~~~~~h~~mEp~~~~A~~~~~~g~l~v~~stQ~p~~~r~~~A~ 251 (809)
T 1n62_B 173 GARKHHNHIFRWEIGDKEGTDATFAKAEVV-SKDMFTYHRVHPSPLETCQCVASMDKIKGELTLWGTFQAPHVIRTVVSL 251 (809)
T ss_dssp EECSSTTEEEEEEEECHHHHHHHHHHCSEE-EEEEEEECCBCCCCSSCCEEEEEEETTTTEEEEEECCSSHHHHHHHHHH
T ss_pred cccccccccccccccccCChhhhhccCCEE-EEEEEEECCEeccCCCCceEEEEEeCCCCeEEEEECCcChHHHHHHHHH
Confidence 32 12357 9999999999985 99999999999999999999999985 6799999999999999999999
Q ss_pred HhCCCCCCEEEEeCCcCCCCCCCCCCcH
Q 003040 820 CLGIPEHNVRVITRRVGGAFGGKAIKAM 847 (854)
Q Consensus 820 ~Lglp~~kV~V~~~~~GGgFGgK~~~~~ 847 (854)
+||||++||||+++++|||||+|.+...
T Consensus 252 ~Lglp~~~VrV~~~~vGGgFG~K~~~~~ 279 (809)
T 1n62_B 252 ISGLPEHKIHVIAPDIGGGFGNKVGAYS 279 (809)
T ss_dssp HHCCCGGGEEEECCBCSCCTTTTSSCCH
T ss_pred HhCCCHHHEEEEeCCCCCCCccccccch
Confidence 9999999999999999999999998643
No 23
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=100.00 E-value=5.9e-47 Score=373.86 Aligned_cols=153 Identities=37% Similarity=0.639 Sum_probs=143.3
Q ss_pred ceeEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhcc
Q 003040 10 TRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVN 89 (854)
Q Consensus 10 ~~~~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~ 89 (854)
++++|+|+|||+.++++ ++|++|||++||+.++++|+|.||++|.||+|||+| ||++++||++|+..++
T Consensus 1 m~~~i~~~vNG~~~~v~-~~~~~tLL~~Lr~~~gl~g~k~gC~~G~CGaCtV~v----------dG~~v~sC~~~~~~~~ 69 (161)
T 1rm6_C 1 MKNILRLTLNGRAREDL-VPDNMLLLDYLRETVGLTGTKQGCDGGECGACTVLV----------DDRPRLACSTLAHQVA 69 (161)
T ss_dssp CEEEEEEEETTEEEEEE-EETTCBHHHHHHHTTCCTTSCCCSSSSSSCTTEEEE----------TTEEEEGGGSBGGGGT
T ss_pred CCceEEEEECCEEEEEe-cCCcCcHHHHHHHcCCCcccccCCCCCCCCCCEEEE----------CCcEEechHHHHHHhC
Confidence 35689999999999997 799999999999999999999999999999999999 7999999999999999
Q ss_pred CceeEEecCCCCCCCCcchHhHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCccc
Q 003040 90 GCLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCR 169 (854)
Q Consensus 90 g~~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCR 169 (854)
|++|+|||||++ .+.+||+|++|+++|+.|||||||||||++|+||.++ |+| |+++|+++|+|||||
T Consensus 70 G~~v~TiEgL~~-~~~~~p~q~a~~~~~~~qCG~Ctpg~im~a~~ll~~~-----~~p-------t~~~i~~~l~gnlcR 136 (161)
T 1rm6_C 70 GKKVETVESLAT-QGTLSKLQAAFHEKLGTQCGFCTPGMIMASEALLRKN-----PSP-------SRDEIKAALAGNLCR 136 (161)
T ss_dssp TSEEECGGGSSB-TTBCCHHHHHHHHHTCCSSCSSHHHHHHHHHHHHHHC-----SSC-------CHHHHHHHTTTCCCS
T ss_pred CceEEEECCCCC-CCccCHHHHHHHHhCCCcCCCCchHHHHHHHHHHhcC-----CCC-------CHHHHHHHHcCCeEC
Confidence 999999999986 5689999999999999999999999999999999653 555 699999999999999
Q ss_pred cCCChhHHHHHHHhhhc
Q 003040 170 CTGYRPIADACKSFAAD 186 (854)
Q Consensus 170 Ctgy~~i~~a~~~~~~~ 186 (854)
||||++|++|+++++..
T Consensus 137 Ctgy~~i~~A~~~~~~~ 153 (161)
T 1rm6_C 137 CTGYVKIIKSVETAAAA 153 (161)
T ss_dssp SSCSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999998753
No 24
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=100.00 E-value=1.9e-42 Score=344.94 Aligned_cols=153 Identities=37% Similarity=0.705 Sum_probs=142.9
Q ss_pred CceeEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhc
Q 003040 9 GTRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSV 88 (854)
Q Consensus 9 ~~~~~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~ 88 (854)
++.|.|+|+|||+.++++ ++|++|||++||+.+|++|+|.||++|.||+|+|+| +|++++||++|+..+
T Consensus 7 ~~~m~i~~~ing~~~~~~-v~~~~tlL~~Lr~~~gl~g~~~~C~~G~CGaC~V~v----------dG~~v~sC~~~~~~~ 75 (168)
T 1t3q_A 7 SQLMRISATINGKPRVFY-VEPRMHLADALREVVGLTGTKIGCEQGVCGSCTILI----------DGAPMRSCLTLAVQA 75 (168)
T ss_dssp CCCEEEEEEETTEEEEEE-ECTTSBHHHHHHHTTCCTTSCCSCSSSSSCTTEEEE----------TTEEEEGGGSBGGGG
T ss_pred CCcceEEEEECCEEEEEe-cCCCCcHHHHHHhcCCCCccccCCCCCCCCCcEEEE----------CCCEeechhhHHHHh
Confidence 466889999999999997 799999999999988999999999999999999999 789999999999999
Q ss_pred cCceeEEecCCCCCCCCcchHhHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCcc
Q 003040 89 NGCLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLC 168 (854)
Q Consensus 89 ~g~~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlC 168 (854)
+|++|+|||||++ ...+||+|++|+++|+.|||||+|||+|++++||.++ |+| ++++|+++|+||+|
T Consensus 76 ~G~~v~Tiegl~~-~~~~~~~q~a~~~~~~~qCG~C~pg~i~~a~~ll~~~-----~~p-------~~~~i~~~l~gnlc 142 (168)
T 1t3q_A 76 EGCSIETVEGLSQ-GEKLNALQDSFRRHHALQCGFCTAGMLATARSILAEN-----PAP-------SRDEVREVMSGNLC 142 (168)
T ss_dssp TTCEEECGGGTCC-SSSCCHHHHHHHHTTCCSSCSSHHHHHHHHHHHHHHC-----SSC-------CHHHHHHHGGGSCC
T ss_pred CCCeEEEEcCCCC-ccccCHHHHHHHHhCCCcCCCchHHHHHHHHHHHhcC-----CCC-------CHHHHHHHHcCCcc
Confidence 9999999999986 5679999999999999999999999999999999543 445 58999999999999
Q ss_pred ccCCChhHHHHHHHhhh
Q 003040 169 RCTGYRPIADACKSFAA 185 (854)
Q Consensus 169 RCtgy~~i~~a~~~~~~ 185 (854)
|||||++|++|++.++.
T Consensus 143 RCt~y~~~v~A~~~~~~ 159 (168)
T 1t3q_A 143 RCTGYETIIDAITDPAV 159 (168)
T ss_dssp SSSCSHHHHHHHTCHHH
T ss_pred cCCCchHHHHHHHHHHH
Confidence 99999999999998775
No 25
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=98.91 E-value=1.1e-09 Score=117.18 Aligned_cols=69 Identities=23% Similarity=0.392 Sum_probs=59.9
Q ss_pred EEEEEecCCC-CCcHHHHHhh---ccC-CcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccCceeEE
Q 003040 21 EKFEVSSVDP-STTLLEFLRY---HTR-FKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITT 95 (854)
Q Consensus 21 ~~~~~~~~~p-~~~Ll~~LR~---~~~-l~g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~T 95 (854)
+.++++ +++ ++||||.||+ +++ .+++|.||++|.||+|+|.| ||+++.||++++....| .++|
T Consensus 55 ~~~~v~-v~~~~~tlLdaL~~i~~~~~ptl~~~~~C~~G~CGsC~V~I----------nG~~~laC~t~v~~~~~-~~~t 122 (282)
T 3vr8_B 55 QKFDVD-LDKCGTMVLDALIKIKNEVDPTLTFRRSCREGICGSCAMNI----------AGENTLACICNIDQNTS-KTTK 122 (282)
T ss_pred EEEEEE-eCCCCCcHHHHHHhcCcccCCceeecCCCCCCCCCCCEEEE----------CCEEecchhhhHhHhcC-CcEE
Confidence 367776 677 9999999996 334 48999999999999999999 79999999999987666 7999
Q ss_pred ecCCCC
Q 003040 96 SEGLGN 101 (854)
Q Consensus 96 vEgl~~ 101 (854)
||||.+
T Consensus 123 IepL~~ 128 (282)
T 3vr8_B 123 IYPLPH 128 (282)
T ss_pred eccCCC
Confidence 999975
No 26
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=98.87 E-value=2.6e-09 Score=111.93 Aligned_cols=68 Identities=21% Similarity=0.284 Sum_probs=61.0
Q ss_pred EEEEEecCCC--CCcHHHHHhhcc---CCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhh--ccCcee
Q 003040 21 EKFEVSSVDP--STTLLEFLRYHT---RFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCS--VNGCLI 93 (854)
Q Consensus 21 ~~~~~~~~~p--~~~Ll~~LR~~~---~l~g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~--~~g~~i 93 (854)
+.++++ +++ ++|||+.||+.. +..+++.||++|.||+|+|.| +|+++.||.+++.. +.|.+
T Consensus 21 ~~~~v~-~~~~~~~tll~~l~~~~~~~~~l~~~~~C~~g~Cg~C~v~v----------~G~~~laC~~~~~~~g~~~~~- 88 (238)
T 2wdq_B 21 QDYTLE-ADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNM----------NGKNGLACITPISALNQPGKK- 88 (238)
T ss_dssp EEEEEE-CCTTCCCBHHHHHHHHHHHCTTCCCCCSSSSSSSCTTEEEE----------TTEEEEGGGCBGGGTCCTTSC-
T ss_pred EEEEee-cCCCCCChHHHHHHHhcccCCCccccccCCCCCCCCCEEEE----------CCEEEcccccchhhhccCCCC-
Confidence 456776 788 999999999875 789999999999999999999 79999999999999 87777
Q ss_pred EEecCCC
Q 003040 94 TTSEGLG 100 (854)
Q Consensus 94 ~TvEgl~ 100 (854)
+|||+|.
T Consensus 89 ~~ie~l~ 95 (238)
T 2wdq_B 89 IVIRPLP 95 (238)
T ss_dssp EEEECCT
T ss_pred EEEeeCC
Confidence 8999996
No 27
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=98.77 E-value=3.9e-09 Score=124.30 Aligned_cols=107 Identities=23% Similarity=0.447 Sum_probs=87.6
Q ss_pred EEEEECCEEEEEecCCCCCcHHHHHhhccCCccc----ccCC-C-CCCCCccEEEEeecCCCcccCCce-eecccccchh
Q 003040 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSV----KLGC-G-EGGCGACVVLLSKYNPELDQLEDF-TISSCLTLLC 86 (854)
Q Consensus 14 i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~----k~gC-~-~G~CGaCtV~v~~~~~~~~~~~~~-~v~sCl~~~~ 86 (854)
|+|+|||+.+++ ++++|||+.||+. |+... ..+| + .|.||+|+|.| +++ .+.||.+++.
T Consensus 2 v~~~ing~~v~v---~~g~tiL~a~~~~-gi~ip~lC~~~~~~~~~G~Cg~C~V~v----------~g~~~~~aC~t~v~ 67 (574)
T 3c8y_A 2 KTIIINGVQFNT---DEDTTILKFARDN-NIDISALCFLNNCNNDINKCEICTVEV----------EGTGLVTACDTLIE 67 (574)
T ss_dssp EEEEETTEEEEE---CCCCBHHHHHHHT-TCCCCCSSCBTTBCCSSSCCCTTEEEE----------TTTEEEEGGGCBCC
T ss_pred eEEEECCEEEEe---CCCCHHHHHHHHc-CCCCCcccCCCCCCCCcccCCCCEEEe----------CCCcccccCCCCcc
Confidence 899999998875 5799999999975 65321 1344 5 89999999999 455 8999999987
Q ss_pred hccCceeEEecCCCCCCCCcchHhHHHHhcCCCCCCCCChHHHHHHHHHHHh
Q 003040 87 SVNGCLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVD 138 (854)
Q Consensus 87 ~~~g~~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~ 138 (854)
+|..|.|.++... ..-+.+++.|...|..+|++|.++..+.+..+...
T Consensus 68 --~gm~V~T~~~~~~--~~r~~~lelll~~h~~~C~~C~~~~~C~Lq~~a~~ 115 (574)
T 3c8y_A 68 --DGMIINTNSDAVN--EKIKSRISQLLDIHEFKCGPCNRRENCEFLKLVIK 115 (574)
T ss_dssp --TTCEEESSCHHHH--HHHHHHHHHHHTTSCCCCTTCTTTTSCHHHHHHHH
T ss_pred --cceeEEecchhhh--hhHHHHHHHHHhccCCCCCcCCCCcchHHHHHHHH
Confidence 8999999999863 23367999999999999999999988887776543
No 28
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=98.76 E-value=2.1e-08 Score=105.24 Aligned_cols=69 Identities=20% Similarity=0.349 Sum_probs=59.8
Q ss_pred EEEEEecCCCCCcHHHHHhh---ccCC-cccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccCceeEEe
Q 003040 21 EKFEVSSVDPSTTLLEFLRY---HTRF-KSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTS 96 (854)
Q Consensus 21 ~~~~~~~~~p~~~Ll~~LR~---~~~l-~g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~Tv 96 (854)
+.++++ +++++|||+.||. +++. .+++.+|.+|.||+|+|.| +|+++.||.+++..++| .++||
T Consensus 24 ~~~~v~-~~~~~tlL~~l~~~~~~~~~~l~~~~~c~~g~Cg~C~v~i----------~G~~~~aC~~~~~~~~g-~~~~i 91 (241)
T 2bs2_B 24 QEYKIE-EAPSMTIFIVLNMIRETYDPDLNFDFVCRAGICGSCGMMI----------NGRPSLACRTLTKDFED-GVITL 91 (241)
T ss_dssp EEEEEE-CCTTCBHHHHHHHHHHHTCTTCCCCCSSSSSSSCTTEEEE----------TTEEEEGGGCBGGGCTT-SEEEE
T ss_pred EEEEEe-CCCCChHHHHHHHhchhcCCCCccCCCCCCCCCCCCEeEE----------CCCeecchhCcHhHcCC-CeEEE
Confidence 457776 7899999999986 2344 4789999999999999999 79999999999999987 89999
Q ss_pred cCCCC
Q 003040 97 EGLGN 101 (854)
Q Consensus 97 Egl~~ 101 (854)
|+|.+
T Consensus 92 e~l~~ 96 (241)
T 2bs2_B 92 LPLPA 96 (241)
T ss_dssp ECCTT
T ss_pred ecCCC
Confidence 99974
No 29
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=98.73 E-value=1.7e-08 Score=106.81 Aligned_cols=82 Identities=20% Similarity=0.325 Sum_probs=66.5
Q ss_pred CCceeEEEEEE---C----C-----EEEEEecCCC-CCcHHHHHhhcc----CCcccccCCCCCCCCccEEEEeecCCCc
Q 003040 8 GGTRHSVVFAV---N----G-----EKFEVSSVDP-STTLLEFLRYHT----RFKSVKLGCGEGGCGACVVLLSKYNPEL 70 (854)
Q Consensus 8 ~~~~~~i~f~~---N----g-----~~~~~~~~~p-~~~Ll~~LR~~~----~l~g~k~gC~~G~CGaCtV~v~~~~~~~ 70 (854)
.+..++++|.| | + +.++++ +++ ++||||.||+.. ...+++.+|.+|.||+|+|.|
T Consensus 6 ~~~~~~~~~~i~R~~~~~~~~~~~~~~~~v~-~~~~~~tlLd~l~~~~~~~~p~l~~~~~c~~g~Cg~C~v~i------- 77 (252)
T 2h88_B 6 AATSRIKKFSIYRWDPDKPGDKPRMQTYEVD-LNKCGPMVLDALIKIKNELDSTLTFRRSCREGICGSCAMNI------- 77 (252)
T ss_dssp --CCCEEEEEEEECCTTSTTSCCEEEEEEEE-GGGSCSBHHHHHHHHHHHTCTTCCCCCSCSSSSSCTTEEEE-------
T ss_pred CCCCceEEEEEEEeCCCCCCCCceEEEEEEe-cCCCCChHHHHHHHhCcccCCCccccCCCCCCCCCCCEEEE-------
Confidence 33346666666 3 3 567776 677 999999999842 267899999999999999999
Q ss_pred ccCCceeecccccchhhccCceeEEecCCCC
Q 003040 71 DQLEDFTISSCLTLLCSVNGCLITTSEGLGN 101 (854)
Q Consensus 71 ~~~~~~~v~sCl~~~~~~~g~~i~TvEgl~~ 101 (854)
+|+++.||.+++..++|. ++|||+|.+
T Consensus 78 ---~G~~~~aC~~~~~~~~g~-~~~iepl~~ 104 (252)
T 2h88_B 78 ---AGGNTLACTKKIDPDLSK-TTKIYPLPH 104 (252)
T ss_dssp ---TTEEEEGGGSBCCCCTTS-CEEEECSTT
T ss_pred ---CCcEEccccCCHhHcCCC-ceEEecccC
Confidence 799999999999999877 899999974
No 30
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=98.35 E-value=5.6e-07 Score=94.41 Aligned_cols=68 Identities=28% Similarity=0.455 Sum_probs=57.0
Q ss_pred EEEEEecCCCCCcHHHHHhhc----cCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhccCceeEEe
Q 003040 21 EKFEVSSVDPSTTLLEFLRYH----TRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTS 96 (854)
Q Consensus 21 ~~~~~~~~~p~~~Ll~~LR~~----~~l~g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~Tv 96 (854)
+.++++ +++++|||+.||+. ....+++.+|++|.||+|+|.| +|+++.||.+++....| ++||
T Consensus 24 ~~~~~~-~~~~~tll~al~~~~~~~~p~l~~~~~c~~G~Cg~C~v~v----------~G~~~~aC~~~~~~~~~--~~~i 90 (243)
T 1kf6_B 24 AFYEVP-YDATTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMV----------NNVPKLACKTFLRDYTD--GMKV 90 (243)
T ss_dssp EEEEEE-ECTTCBHHHHHHHHHHHTCTTCCCCCCCSSSSSCCCEEEE----------TTEEEEGGGCBGGGCTT--CEEE
T ss_pred EEEEEe-cCCCChHHHHHHHcCcccCCCcccccCCCCCcCCCCEeEE----------CCEEEeeeeeEHhhCCC--cEEE
Confidence 446665 68999999999974 1235789999999999999999 78999999999988765 6999
Q ss_pred cCCCC
Q 003040 97 EGLGN 101 (854)
Q Consensus 97 Egl~~ 101 (854)
|+|..
T Consensus 91 ~~l~~ 95 (243)
T 1kf6_B 91 EALAN 95 (243)
T ss_dssp ECCTT
T ss_pred EecCC
Confidence 99864
No 31
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1
Probab=98.14 E-value=9.3e-06 Score=72.29 Aligned_cols=51 Identities=20% Similarity=0.369 Sum_probs=46.7
Q ss_pred EEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCC-CCCCCccEEEEee
Q 003040 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCG-EGGCGACVVLLSK 65 (854)
Q Consensus 13 ~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~-~G~CGaCtV~v~~ 65 (854)
+|+|++||+.++++ +.++++||+.|++. |+.|++.+|+ .|.||+|.|.|..
T Consensus 2 ~v~i~~~g~~~~~~-~~~g~tll~a~~~~-gi~gi~~~C~G~G~Cg~C~v~v~~ 53 (93)
T 1l5p_A 2 TITAVKGGVKKQLK-FEDDQTLFTVLTEA-GLMSADDTCQGNKACGKCICKHVS 53 (93)
T ss_dssp EEEEEETTEEEEEE-CCTTEEHHHHHHTT-TSSCCTTSCSSSSSSCCCEEEEEE
T ss_pred eEEEEeCCcEEEEE-ECCCChHHHHHHHc-CCCcCCcCCCCcCCcCCCEEEECC
Confidence 57899999998887 79999999999976 9999999999 9999999999954
No 32
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=97.79 E-value=2.3e-05 Score=70.95 Aligned_cols=54 Identities=19% Similarity=0.466 Sum_probs=46.4
Q ss_pred CceeEEEEE-ECCEEEEEecCCCCCcHHHHHhhccCCcccccCCC-CCCCCccEEEEee
Q 003040 9 GTRHSVVFA-VNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCG-EGGCGACVVLLSK 65 (854)
Q Consensus 9 ~~~~~i~f~-~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~-~G~CGaCtV~v~~ 65 (854)
|....|+|. .||+.++++ +.+++|||+.|++. |+. ++.+|+ .|.||.|.|.|..
T Consensus 1 ~~~~~v~~~~~~g~~~~~~-~~~g~tlL~a~~~~-gi~-i~~~C~g~G~Cg~C~v~v~~ 56 (103)
T 2wlb_A 1 GTGIKVFFVTPEGREIMIE-GNEGDSILDLAHAN-NID-LEGACEGSVACSTCHVIVDP 56 (103)
T ss_dssp CCCEEEEEECTTCCEEEEE-ECTTCBHHHHHHHT-TCC-CCCTTTTSSCCSTTEEEECH
T ss_pred CCceEEEEEeCCCCEEEEE-ECCCCHHHHHHHHc-CCC-cCcCCCCCCCcCCCEEEECC
Confidence 445689999 999777776 68999999999976 887 999999 7999999999853
No 33
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A*
Probab=97.79 E-value=1.9e-05 Score=86.87 Aligned_cols=153 Identities=13% Similarity=0.080 Sum_probs=100.4
Q ss_pred CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeccccCceeeeCCCcccccceEecC-CcEEecccccHHHH
Q 003040 240 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQ-TGIEIGATVTISKA 318 (854)
Q Consensus 240 ~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~-~~l~IGA~vTl~~l 318 (854)
...+++|+|.+|+.++++.... ..-...+++|||.+.+-.. ....+|+++ +.++..+..++ ..+++||++++.+|
T Consensus 15 a~~~v~p~s~eel~~~l~~a~~-~~~pv~vlGgGSnll~~d~--~~GvVI~l~-~~~i~~i~~~~~~~v~vgAG~~~~~l 90 (340)
T 1uxy_A 15 AQHIVCAEDEQQLLNAWQYATA-EGQPVLILGEGSNVLFLED--YRGTVIINR-IKGIEIHDEPDAWYLHVGAGENWHRL 90 (340)
T ss_dssp EEEEEEESSHHHHHHHHHHHHH-TTCCEEEESSCTTEEECSC--EEEEEEEEC-CCCEEEEECSSEEEEEEETTSBHHHH
T ss_pred ccEEEEeCCHHHHHHHHHHHHH-cCCCEEEECCCcCCcccCC--CCeEEEEcc-CCCcEEEecCCCeEEEEecCCCHHHH
Confidence 4568899999999998874211 2346789999999977432 356899985 66665555555 58999999999999
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHHHH---HHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeC-Cee-
Q 003040 319 IEALKEETKEFHSEALMVFKKIAGHM---EKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTG-QKC- 393 (854)
Q Consensus 319 ~~~l~~~~~~~~~~~~~~~p~L~~~l---~~ias~qIRN~aTiGGNl~~asp~~~~sD~~~~LlAldA~v~l~s~-~g~- 393 (854)
.+.+.+. .+..|.-+. ..+|+..++|.|+-|++++..-. .|++... +|+
T Consensus 91 ~~~~~~~----------Gl~Gle~~~gIPGtVGGa~~~NaGayG~ei~d~v~----------------~v~vv~~~~G~v 144 (340)
T 1uxy_A 91 VKYTLQE----------GMPGLENLALIPGCVGSSPIQNIGAYGVELQRVCA----------------YVDSVELATGKQ 144 (340)
T ss_dssp HHHHHHT----------TCCSCGGGTTCCSBGGGTTTTTCEETTEEGGGTEE----------------EEEEEETTTTEE
T ss_pred HHHHHHC----------CCCccccccCCccchhHHHHhccccchhhHHhhee----------------EEEEEECCCCcE
Confidence 9876542 111111111 35667777777776666554322 2667774 674
Q ss_pred EEEehhhhhc--C-CCCC----CCceEEEEEcCCCC
Q 003040 394 EKLMLEEFLE--R-PPLD----SRSILLSVEIPCWD 422 (854)
Q Consensus 394 R~vpl~dF~~--~-~~L~----~~Eii~~I~iP~~~ 422 (854)
++++.+|++- + ..+. ...||+++.+...+
T Consensus 145 ~~~~~~d~~~gYR~s~~~~~~~~~gIVt~v~~~L~~ 180 (340)
T 1uxy_A 145 VRLTAKECRFGYRDSIFKHEYQDRFAIVAVGLRLPK 180 (340)
T ss_dssp EEEETGGGTCBTTBCGGGTTTTTTEEEEEEEEEEES
T ss_pred EEEeHHHhccccCcCccCCcCCCCEEEEEEEEEEEc
Confidence 8888888653 2 2222 25799998887543
No 34
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=97.78 E-value=3.5e-05 Score=69.18 Aligned_cols=51 Identities=14% Similarity=0.358 Sum_probs=43.4
Q ss_pred eeEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEe
Q 003040 11 RHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLS 64 (854)
Q Consensus 11 ~~~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~ 64 (854)
...|+|.+||..++++ +++++|||+.|++. |+ .++.+|+.|.||+|.|.|.
T Consensus 2 ~~~v~~~~~~~~~~~~-~~~g~tlL~a~~~~-gi-~i~~~C~~G~Cg~C~v~v~ 52 (98)
T 1iue_A 2 FYNITLRTNDGEKKIE-CNEDEYILDASERQ-NV-ELPYSCRGGSCSTCAAKLV 52 (98)
T ss_dssp EEEEEEEETTEEEEEE-EETTSCHHHHHHHT-TC-CCCCSSCSSSSSTTEEEEE
T ss_pred cEEEEEEeCCCeEEEE-eCCCCcHHHHHHHc-CC-CCCCCCCCCcCCCCEEEEe
Confidence 3578999999656665 67899999999976 87 6999999999999999973
No 35
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=97.73 E-value=4.8e-05 Score=68.14 Aligned_cols=51 Identities=16% Similarity=0.322 Sum_probs=42.7
Q ss_pred eeEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEe
Q 003040 11 RHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLS 64 (854)
Q Consensus 11 ~~~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~ 64 (854)
...|+|..+|..++++ +++++|||+.|++. |+. ++.+|+.|.||+|.|.|.
T Consensus 2 ~~~v~~~~~~~~~~~~-~~~g~tlL~a~~~~-gi~-i~~~C~~G~Cg~C~v~v~ 52 (97)
T 1a70_A 2 AYKVTLVTPTGNVEFQ-CPDDVYILDAAEEE-GID-LPYSCRAGSCSSCAGKLK 52 (97)
T ss_dssp EEEEEEEETTEEEEEE-EETTSCHHHHHHHT-TCC-CCCSSSSSCSSTTEEEEE
T ss_pred eEEEEEEeCCceEEEE-eCCCCcHHHHHHHc-CCC-cccCCCCcCCCCCeEEEc
Confidence 3568888877556665 67899999999975 887 999999999999999983
No 36
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=97.71 E-value=2.3e-05 Score=70.29 Aligned_cols=51 Identities=20% Similarity=0.403 Sum_probs=43.7
Q ss_pred eeEEEEEEC---CEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEe
Q 003040 11 RHSVVFAVN---GEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLS 64 (854)
Q Consensus 11 ~~~i~f~~N---g~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~ 64 (854)
+++++++|| |..++++ +++++|||+.||+. |+. ++.+|+.|.||+|.|.|.
T Consensus 2 ~~~~~v~~~~~~~~~~~~~-~~~g~tlL~a~~~~-gi~-i~~~C~~G~Cg~C~v~v~ 55 (98)
T 1jq4_A 2 QRVHTITAVTEDGESLRFE-CRSDEDVITAALRQ-NIF-LMSSCREGGCATCKALCS 55 (98)
T ss_dssp CCEEEEEEEETTTEEEEEE-EESCCTHHHHHHHH-TCC-CCCSCCSSCCCCCCBCEE
T ss_pred CCcEEEEEEecCCCcEEEE-eCCCChHHHHHHHc-CCC-CcCCCCCCCCCCCEEEEE
Confidence 346788888 7777776 68899999999975 887 999999999999999883
No 37
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=97.60 E-value=9.6e-05 Score=65.63 Aligned_cols=49 Identities=18% Similarity=0.451 Sum_probs=42.3
Q ss_pred eEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEe
Q 003040 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLS 64 (854)
Q Consensus 12 ~~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~ 64 (854)
..|+|..||..++++ +++++|||+.|++. | .++.+|+.|.||.|.|.|.
T Consensus 2 ~~V~~~~~~~~~~~~-~~~g~tlL~a~~~~-g--~i~~~C~~G~Cg~C~v~v~ 50 (93)
T 1wri_A 2 YKVTLKTPDGDITFD-VEPGERLIDIGSEK-A--DLPLSCQAGACSTCLGKIV 50 (93)
T ss_dssp EEEEEEETTEEEEEE-ECTTSCHHHHHHHH-S--CCCCSSSSSSSSTTEEEEE
T ss_pred EEEEEEECCCeEEEE-ECCCCcHHHHHHHC-c--CCCCCCCCCCCCCCEEEEe
Confidence 368898888666666 68999999999976 7 7999999999999999983
No 38
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=97.59 E-value=0.00013 Score=64.92 Aligned_cols=49 Identities=14% Similarity=0.335 Sum_probs=41.4
Q ss_pred EEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEe
Q 003040 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLS 64 (854)
Q Consensus 13 ~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~ 64 (854)
+|+|..++..++++ +++++|||+.|++. |+ .++.+|+.|.||.|.|.|.
T Consensus 2 ~v~~~~~~g~~~~~-~~~g~tlL~a~~~~-gi-~i~~~C~~G~Cg~C~v~v~ 50 (94)
T 1awd_A 2 KVTLKTPSGEETIE-CPEDTYILDAAEEA-GL-DLPYSCRAGACSSCAGKVE 50 (94)
T ss_dssp EEEEEETTEEEEEE-CCTTSCHHHHHHHT-TC-CCCCSSSSSSSSTTEEEEE
T ss_pred EEEEEeCCCcEEEE-ECCCCcHHHHHHHc-CC-CCCcCCCCCcCCCCEEEEE
Confidence 57888765556666 78999999999975 87 5999999999999999983
No 39
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=97.56 E-value=9.5e-05 Score=65.74 Aligned_cols=49 Identities=22% Similarity=0.525 Sum_probs=40.7
Q ss_pred eEEEEE-ECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEe
Q 003040 12 HSVVFA-VNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLS 64 (854)
Q Consensus 12 ~~i~f~-~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~ 64 (854)
.+|+|. .|| .++++ +++++|||+.|++. |+ ....+|+.|.||.|.|.|.
T Consensus 2 ~~v~~~~~~g-~~~~~-~~~g~tlL~a~~~~-gi-~i~~~C~~G~Cg~C~v~v~ 51 (95)
T 1frr_A 2 YKTVLKTPSG-EFTLD-VPEGTTILDAAEEA-GY-DLPFSCRAGACSSCLGKVV 51 (95)
T ss_dssp EEEEEEETTE-EEEEE-ECTTCCHHHHHHHT-TC-CCCCSSSSSSSSTTEEEEE
T ss_pred eEEEEEeCCC-cEEEE-eCCCCcHHHHHHHc-CC-CCCCCCCCcCCCCCEEEEE
Confidence 368886 888 44554 57899999999876 87 4899999999999999995
No 40
>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1
Probab=97.53 E-value=0.00013 Score=65.39 Aligned_cols=51 Identities=20% Similarity=0.400 Sum_probs=41.5
Q ss_pred eeEEEEEECCE--EEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEe
Q 003040 11 RHSVVFAVNGE--KFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLS 64 (854)
Q Consensus 11 ~~~i~f~~Ng~--~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~ 64 (854)
...|+|..|+. .++++ +++++|||+.|++. |+. ...+|+.|.||.|.|.|.
T Consensus 2 ~~~V~~~~~~~~~~~~~~-~~~g~tlL~a~~~~-gi~-i~~~C~~G~Cg~C~v~v~ 54 (98)
T 1frd_A 2 SYQVRLINKKQDIDTTIE-IDEETTILDGAEEN-GIE-LPFSCHSGSCSSCVGKVV 54 (98)
T ss_dssp EEEEEEEETTTTEEEEEE-EETTSCHHHHHHHT-TCC-CCCSSSSSSSSTTEEEEE
T ss_pred ceEEEEEeCCCCCCEEEE-eCCCCcHHHHHHHc-CCC-cccCCCCCCCCCCEEEEE
Confidence 35688988542 55665 57899999999875 876 999999999999999984
No 41
>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...
Probab=97.34 E-value=0.00025 Score=63.46 Aligned_cols=51 Identities=22% Similarity=0.459 Sum_probs=40.7
Q ss_pred eeEEEEEECCE--EEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEe
Q 003040 11 RHSVVFAVNGE--KFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLS 64 (854)
Q Consensus 11 ~~~i~f~~Ng~--~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~ 64 (854)
...|+|..++. ..+++ +++++|||+.|++. |+. +..+|+.|.||+|.|.|.
T Consensus 2 ~~~V~~~~~~~~~~~~~~-~~~g~tlL~a~~~~-gi~-i~~~C~~G~Cg~C~v~v~ 54 (98)
T 1czp_A 2 TFKVTLINEAEGTKHEIE-VPDDEYILDAAEEQ-GYD-LPFSCRAGACSTCAGKLV 54 (98)
T ss_dssp EEEEEEEETTTTEEEEEE-EETTSCHHHHHHHT-TCC-CCCSSSSSSSSTTEEEEE
T ss_pred ceEEEEEeCCCCCcEEEE-eCCCCCHHHHHHHc-CCC-ccCCCCCCCCCCCeEEEc
Confidence 34677877542 45554 57899999999975 886 999999999999999983
No 42
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1
Probab=97.31 E-value=0.00015 Score=79.30 Aligned_cols=153 Identities=14% Similarity=0.152 Sum_probs=97.9
Q ss_pred ceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeccccCceeeeCCCcccccceEecCCcEEecccccHHHHHH
Q 003040 241 GSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIE 320 (854)
Q Consensus 241 ~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~ 320 (854)
..+++|+|.+|+.++++.... .+-...+++|||++..-.. .....+||+++ |+.|+.+++.+++||++++.+|.+
T Consensus 50 ~~vv~P~s~eev~~~l~~a~~-~~~pv~~~GgGtnl~~~~~-~~~gvvI~l~~---m~~i~id~~~v~v~aGv~~~~l~~ 124 (326)
T 1hsk_A 50 DFYITPTKNEEVQAVVKYAYQ-NEIPVTYLGNGSNIIIREG-GIRGIVISLLS---LDHIEVSDDAIIAGSGAAIIDVSR 124 (326)
T ss_dssp EEEECCSSHHHHHHHHHHHHH-TTCCEEEESSCSSEEECTT-CEEEEEEECTT---CCCEEEETTEEEEETTSBHHHHHH
T ss_pred eEEEEcCCHHHHHHHHHHHHH-cCCCEEEECCCCccccCCC-CCCeEEEEeCC---CCceEEcCCEEEEeCCCcHHHHHH
Confidence 468899999999998874211 2346889999999865322 12468999986 677766778999999999999998
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCcccccc-CCCCCCchHHHHHhcCcEEEEEeCCe-eEEEeh
Q 003040 321 ALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQ-RKHFPSDVATVLLGAGAMVNIMTGQK-CEKLML 398 (854)
Q Consensus 321 ~l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~as-p~~~~sD~~~~LlAldA~v~l~s~~g-~R~vpl 398 (854)
.+.+. .++. +..++.. -+||||++++.. ..+ ..+.=.++ .+++...+| .++++.
T Consensus 125 ~l~~~----------Gl~g----Le~~~~~----PgtvGG~i~~naggyG--~~~~d~v~----~v~vv~~~G~i~~~~~ 180 (326)
T 1hsk_A 125 VARDY----------ALTG----LEFACGI----PGSIGGAVYMNAGAYG--GEVKDCID----YALCVNEQGSLIKLTT 180 (326)
T ss_dssp HHHHT----------TEES----CGGGTTC----CSBHHHHHHHTCEETT--EEHHHHEE----EEEEECTTSCEEEEET
T ss_pred HHHHC----------CCcc----ccccCCC----cchhhHHHhcccccCc--hhhhhhEE----EEEEEeCCCCEEEECh
Confidence 86543 1110 0111111 158999997643 331 12222222 455666777 477777
Q ss_pred hhhhcC---CCC-CCCceEEEEEcCCCC
Q 003040 399 EEFLER---PPL-DSRSILLSVEIPCWD 422 (854)
Q Consensus 399 ~dF~~~---~~L-~~~Eii~~I~iP~~~ 422 (854)
++++.. ..| ..+.|||++.+...+
T Consensus 181 ~~~~~gyr~~~l~s~ggIIt~~~l~l~p 208 (326)
T 1hsk_A 181 KELELDYRNSIIQKEHLVVLEAAFTLAP 208 (326)
T ss_dssp TTTTCBTTBCHHHHTTCEEEEEEEECEE
T ss_pred HHcCCCccccccCCCCEEEEEEEEEEEc
Confidence 775432 222 236899999987654
No 43
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=97.27 E-value=0.00031 Score=63.73 Aligned_cols=51 Identities=25% Similarity=0.557 Sum_probs=44.4
Q ss_pred EEEEE-ECCEEEEEecCCCCCcHHHHHhhccCCcccccCCC-CCCCCccEEEEee
Q 003040 13 SVVFA-VNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCG-EGGCGACVVLLSK 65 (854)
Q Consensus 13 ~i~f~-~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~-~G~CGaCtV~v~~ 65 (854)
+|+|. .||+.++++ +.+++|||+.|++. |+.|...+|+ .|.||.|.|.|..
T Consensus 2 ~vt~~~~~G~~~~~~-~~~g~tll~a~~~~-gi~~i~~~C~G~G~CgtC~v~v~~ 54 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQ-AEPGLSLMEALRDA-GIDELLALCGGCCSCATCHVLVAP 54 (104)
T ss_dssp EEEEECTTSCEEEEE-CCTTSBHHHHHHHT-TCTTCCCTTCSSSSCSTTEEEECG
T ss_pred EEEEEeCCCCEEEEE-ECCCChHHHHHHHc-CCCCCCcCCCCCCCCCCCEEEECC
Confidence 46665 589999997 79999999999975 9999999999 9999999999854
No 44
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=97.15 E-value=0.00041 Score=63.00 Aligned_cols=51 Identities=22% Similarity=0.497 Sum_probs=43.6
Q ss_pred EEEE-EECCEEEEEecCCCCCcHHHHHhhccCCcccccCCC-CCCCCccEEEEee
Q 003040 13 SVVF-AVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCG-EGGCGACVVLLSK 65 (854)
Q Consensus 13 ~i~f-~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~-~G~CGaCtV~v~~ 65 (854)
+|+| ..||+.++++ +.+++|||+.+++. |+.|....|+ .|.||.|.|.|..
T Consensus 2 ~V~~~~~~g~~~~~~-~~~g~tlLeaa~~~-gi~~i~~~C~g~G~CgtC~v~v~~ 54 (106)
T 1xlq_A 2 KVVYVSHDGTRRELD-VADGVSLMQAAVSN-GIYDIVGDCGGSASCATCHVYVNE 54 (106)
T ss_dssp EEEEECTTSCEEEEE-CCTTCBHHHHHHHT-TCTTSCCTTCSSSSSCTTEEEECT
T ss_pred EEEEEeCCCCEEEEE-ECCCCcHHHHHHHc-CCCCCCcCCCCCcccCcCEEEECC
Confidence 5788 5799777776 78999999999875 8888999995 8999999999853
No 45
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=97.12 E-value=0.00046 Score=62.64 Aligned_cols=51 Identities=25% Similarity=0.594 Sum_probs=43.5
Q ss_pred EEEE-EECCEEEEEecCCCCCcHHHHHhhccCCcccccCCC-CCCCCccEEEEee
Q 003040 13 SVVF-AVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCG-EGGCGACVVLLSK 65 (854)
Q Consensus 13 ~i~f-~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~-~G~CGaCtV~v~~ 65 (854)
+|+| ..||+.++++ +.+++|||+.+++. |+.|....|+ .|.||.|.|.|..
T Consensus 2 ~v~~~~~~g~~~~~~-~~~g~tlL~aa~~~-gi~~i~~~C~g~G~CgtC~v~v~~ 54 (106)
T 1uwm_A 2 KIIFIEHNGTRHEVE-AKPGLTVMEAARDN-GVPGIDADCGGACACSTCHAYVDP 54 (106)
T ss_dssp EEEEECTTCCEEEEE-CCTTSBHHHHHHTT-TCTTCCCTTSSSSSSCTTEEEECH
T ss_pred EEEEEeCCCCEEEEE-ECCCCcHHHHHHHc-CCCCcccCCCCCCCcCcCEEEECC
Confidence 5778 5789777776 78999999999875 8888999995 8999999999854
No 46
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=97.08 E-value=0.00061 Score=64.04 Aligned_cols=52 Identities=25% Similarity=0.485 Sum_probs=44.8
Q ss_pred eEEEEE-ECCEEEEEecCCCCCcHHHHHhhccCCcccccCCC-CCCCCccEEEEee
Q 003040 12 HSVVFA-VNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCG-EGGCGACVVLLSK 65 (854)
Q Consensus 12 ~~i~f~-~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~-~G~CGaCtV~v~~ 65 (854)
.+|+|. .+|+.++++ +.+++|||+.|++. |+.|....|+ .|.||.|.|.|..
T Consensus 22 ~~Vt~~~~~G~~~~v~-~~~G~tLL~aa~~~-gi~gi~~~C~G~G~CgtC~v~v~~ 75 (126)
T 3hui_A 22 AKINFVDHTGETRTVE-VEEGATVMEAAIRN-AIPGVEAECGGACACATCHVYVDE 75 (126)
T ss_dssp EEEEEECTTSCEEEEE-EETTSBHHHHHHTT-TCTTCCCTTSSSSCCSTTEEEECG
T ss_pred eEEEEEeCCCCEEEEE-ECCCCcHHHHHHHc-CCCCCccCCCCCCCCCCCEEEECC
Confidence 367887 789777776 68999999999976 9999999998 8999999999854
No 47
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1
Probab=97.03 E-value=0.00051 Score=62.98 Aligned_cols=50 Identities=12% Similarity=0.357 Sum_probs=39.4
Q ss_pred EEEEEEC-C---EEEEEecCCCCCcHHHHHhhccCCcccccCC-CCCCCCccEEEEee
Q 003040 13 SVVFAVN-G---EKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC-GEGGCGACVVLLSK 65 (854)
Q Consensus 13 ~i~f~~N-g---~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC-~~G~CGaCtV~v~~ 65 (854)
+|+|..| | ..++++ +++++|||+.|++. |+. +..+| +.|.||.|.|.|..
T Consensus 3 ~i~~~~~~g~~~~~~~~~-~~~g~tlL~a~~~~-gi~-i~~~C~~~G~Cg~C~v~v~~ 57 (111)
T 1i7h_A 3 KIVILPHQDLCPDGAVLE-ANSGETILDAALRN-GIE-IEHACEKSCACTTCHCIVRE 57 (111)
T ss_dssp EEEECCBTTTBTTCEEEE-CCTTCBHHHHHHHT-TCC-CCCTTSSSSCCSTTEEEEEE
T ss_pred EEEEEeCCCcCCCCeEEE-eCCCCcHHHHHHHc-CCC-CcccCCCCCcCCCCEEEEcc
Confidence 5788873 2 234444 57899999999976 876 99999 59999999999853
No 48
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=96.78 E-value=0.00055 Score=62.03 Aligned_cols=51 Identities=20% Similarity=0.458 Sum_probs=43.2
Q ss_pred EEEE-EECCEEEEEecCCCCCcHHHHHhhccCCcccccCCC-CCCCCccEEEEee
Q 003040 13 SVVF-AVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCG-EGGCGACVVLLSK 65 (854)
Q Consensus 13 ~i~f-~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~-~G~CGaCtV~v~~ 65 (854)
+|+| ..||+.++++ +.+++|||+.+++. |+.|....|+ .|.||.|.|.|..
T Consensus 2 ~V~~~~~~g~~~~~~-~~~g~tlL~aa~~~-gi~~i~~~C~g~G~CgtC~v~v~~ 54 (105)
T 1b9r_A 2 RVVFIDEQSGEYAVD-AQDGQSLMEVATQN-GVPGIVAECGGSCVCATCRIEIED 54 (105)
T ss_dssp EEEECCTTTSCEEEE-CCTTCCTTHHHHHH-TCCCCCCSSTTSSCCCCCCCEECT
T ss_pred EEEEEeCCCCEEEEE-ECCCChHHHHHHHc-CCCCcCcCCCCCCCcCcCEEEECC
Confidence 5778 5789666776 68899999999876 8888999998 7999999999853
No 49
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes}
Probab=96.54 E-value=0.0048 Score=67.16 Aligned_cols=153 Identities=17% Similarity=0.251 Sum_probs=91.2
Q ss_pred CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeccccCceeeeCCCcccccceEecCCcEEecccccHHHHH
Q 003040 240 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAI 319 (854)
Q Consensus 240 ~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~ 319 (854)
...+++|+|.+|+.++++.... ..-...+++|||.+..-.. .....+||+++ |+.|..+++.+++||++++.+|.
T Consensus 55 p~~vv~P~s~eev~~~v~~a~~-~~~pv~v~GgGsnl~~~~~-~~~gvvI~l~~---~~~I~~d~~~v~v~aG~~~~~l~ 129 (322)
T 3tx1_A 55 ADVFVMPKTIEEAQEVVAYCHQ-NKIPLTILGNGSNLIIKDG-GIRGVILHLDL---LQTIERNNTQIVAMSGAKLIDTA 129 (322)
T ss_dssp EEEEEECSSHHHHHHHHHHHHH-TTCCEEEESCCTTEEECTT-CEEEEEEECTT---CCCEEEETTEEEEETTSBHHHHH
T ss_pred eeEEEEeCCHHHHHHHHHHHHH-cCCcEEEECCccCCCcCCC-CCCeEEEECCC---CCcEEECCCEEEEecCcCHHHHH
Confidence 4578999999999887763211 2346788999999875321 23468899974 66777778899999999999999
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCe-eEEEeh
Q 003040 320 EALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQK-CEKLML 398 (854)
Q Consensus 320 ~~l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp~~~~sD~~~~LlAldA~v~l~s~~g-~R~vpl 398 (854)
+.+.+.- +. -+...++. -+||||++++.... |-..+.-.+ -.+++...+| .++++-
T Consensus 130 ~~l~~~G----------l~----Gle~~~gi----PgTVGGav~~NaGg-yGg~~~d~v----~~vevV~~~G~i~~~~~ 186 (322)
T 3tx1_A 130 KFALNES----------LS----GLEFACGI----PGSIGGALHMNAGA-YGGEISDVL----EAATVLTQTGELKKLKR 186 (322)
T ss_dssp HHHHHTT----------EE----SCGGGTTC----CSBHHHHHHHTCEE-TTEEHHHHE----EEEEEECTTSCEEEEEG
T ss_pred HHHHHcC----------Cc----ccccCCCC----cchhHHHHHhCccC-cccchHhhE----EEEEEEcCCCCEEEech
Confidence 8865430 00 01112222 28999999865432 111222211 1344444556 355665
Q ss_pred hh-hhc-C-CCCC-CCceEEEEEcCC
Q 003040 399 EE-FLE-R-PPLD-SRSILLSVEIPC 420 (854)
Q Consensus 399 ~d-F~~-~-~~L~-~~Eii~~I~iP~ 420 (854)
+| +|. + ..+. .+.|||++.+..
T Consensus 187 ~~~~~~yR~s~~g~~~~IIt~~tl~L 212 (322)
T 3tx1_A 187 SELKAAYRFSTIAEKNYIVLDATFSL 212 (322)
T ss_dssp GGCC--CC-CTTTGGGCEEEEEEEEC
T ss_pred HHcCcchhhcccCCCCEEEEEEEEEE
Confidence 65 332 1 1222 245777766654
No 50
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=96.28 E-value=0.0024 Score=77.87 Aligned_cols=103 Identities=23% Similarity=0.379 Sum_probs=70.3
Q ss_pred EEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCC------CCCCCCccEEEEeec--CCC-------ccc----C
Q 003040 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC------GEGGCGACVVLLSKY--NPE-------LDQ----L 73 (854)
Q Consensus 13 ~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC------~~G~CGaCtV~v~~~--~~~-------~~~----~ 73 (854)
+++|+|||+.+++ .+++|||+.++.. |+. .-.-| ..|.|+.|.|.|... +.+ .|+ .
T Consensus 1 mv~i~idg~~~~v---~~g~til~a~~~~-gi~-ip~~C~~~~~~~~G~C~~C~V~v~~~~~~~~g~~~~~~~G~~~~~~ 75 (783)
T 3i9v_3 1 MVRVKVNDRIVEV---PPGTSVMDAVFHA-GYD-VPLFCSEKHLSPIGACRMCLVRIGLPKKGPDGKPLLNEKGEPEIQW 75 (783)
T ss_dssp CEEEECSSCEEEE---CTTCBHHHHHHHT-TCC-CCCSSCCTTSCCCCCSCCSEEEEECC-----------------CCB
T ss_pred CeEEEECCEEEEe---CCCChHHHHHHHh-CCC-ccccCCCCCCCCCcccCCcEEEeccccccccccccccccccccccc
Confidence 4789999998876 4799999999864 543 23345 899999999999521 100 010 1
Q ss_pred CceeecccccchhhccCceeEEecCCCCCCCCcc----hHhHHHHhcCCCCCCCCChHH
Q 003040 74 EDFTISSCLTLLCSVNGCLITTSEGLGNSKTGFH----PIHQRFAGFHASQCGFCTPGM 128 (854)
Q Consensus 74 ~~~~v~sCl~~~~~~~g~~i~TvEgl~~~~~~~h----~iq~a~~~~~~~qCG~CtPG~ 128 (854)
..+.+.||.+|+. +|..|.|- ..... -+-+-|..+|-.-|..|..|=
T Consensus 76 ~~~~~~aC~t~v~--~gm~v~t~------~~~~~~~r~~~le~ll~nhp~dC~~C~~~g 126 (783)
T 3i9v_3 76 QPKLAASCVTAVA--DGMVVDTL------SDVVREAQAGMVEFTLLNHPLDCPTCDKGG 126 (783)
T ss_dssp CSSCEETTTCBCC--SSEEEESS------SHHHHHHHHHHHHHHHTSCCCCTTTCTTGG
T ss_pred CCCcccccCCCCC--CCCEEEEC------CHHHHHHHHHHHHHHHhcCCCCCccCCCCC
Confidence 2367889999975 69999873 11222 244455678888999998764
No 51
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=96.15 E-value=0.0068 Score=55.19 Aligned_cols=50 Identities=26% Similarity=0.501 Sum_probs=40.1
Q ss_pred EEEEE-ECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCC-CCCCccEEEEee
Q 003040 13 SVVFA-VNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGE-GGCGACVVLLSK 65 (854)
Q Consensus 13 ~i~f~-~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~-G~CGaCtV~v~~ 65 (854)
+|+|. -||+.++++ +.+++|||+.+++. |+. ....|+. |.||.|.|.|..
T Consensus 7 ~v~~~~~~g~~~~~~-~~~g~tlL~aa~~~-gi~-i~~~C~g~G~CgtC~v~v~~ 58 (109)
T 2y5c_A 7 NVVFVDRSGQRIPVS-GRVGDNVLHLAQRH-GVD-LEGACEASLACSTCHVYVSE 58 (109)
T ss_dssp EEEEECTTSCEEEEE-EETTCBHHHHHHHT-TCC-CCCTTSSSSSCCTTEEEECH
T ss_pred EEEEEcCCCCEEEEE-ECCCCcHHHHHHHc-CCC-CCcCCCCCcCcCccEEEECC
Confidence 45553 489987776 68899999999875 764 7889987 999999999853
No 52
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=96.07 E-value=0.0052 Score=55.82 Aligned_cols=49 Identities=18% Similarity=0.447 Sum_probs=39.3
Q ss_pred EEEEE-ECCEEEEEecCCCCCcHHHHHhhccCCcccc--cCCCC-CCCCccEEEEe
Q 003040 13 SVVFA-VNGEKFEVSSVDPSTTLLEFLRYHTRFKSVK--LGCGE-GGCGACVVLLS 64 (854)
Q Consensus 13 ~i~f~-~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k--~gC~~-G~CGaCtV~v~ 64 (854)
+|+|. -+|+.++++ +.+++|||+.+++. |+. .. ..|+. |.||.|.|.|.
T Consensus 8 ~V~~~~~~g~~~~v~-~~~g~tLL~aa~~~-gi~-i~~~~~Cgg~G~CgtC~v~v~ 60 (108)
T 2bt6_A 8 TVHFINRDGETLTTK-GKIGDSLLDVVVQN-NLD-IDGFGACEGTLACSTCHLIFE 60 (108)
T ss_dssp EEEEECTTSCEEEEE-EETTCBHHHHHHHT-TCC-CTTTTTTSSSSSBSTTEEECC
T ss_pred EEEEECCCCCEEEEE-ECCCChHHHHHHHc-CCC-CCcccCCCCCcCcCCCEEEEC
Confidence 45665 469977876 68899999999865 654 66 89975 99999999985
No 53
>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A
Probab=96.05 E-value=0.0033 Score=59.19 Aligned_cols=49 Identities=14% Similarity=0.371 Sum_probs=39.5
Q ss_pred eEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEe
Q 003040 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLS 64 (854)
Q Consensus 12 ~~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~ 64 (854)
.+|+|.+||+. +++ +.+++|||+.|++. |+. ...+|+.|.||.|.|.|.
T Consensus 28 ~~i~i~~~g~~-~v~-v~~g~tlL~aa~~~-Gi~-i~~~C~~G~CgtC~v~v~ 76 (128)
T 1doi_A 28 SDMDLDDEDYG-SLE-VNEGEYILEAAEAQ-GYD-WPFSCRAGACANCAAIVL 76 (128)
T ss_dssp HHSCCCTTTEE-EEE-CCTTSCHHHHHHHT-TCC-CCCSSSSSSSSTTEEEEE
T ss_pred cEEEEEeCCcE-EEE-ECCCCcHHHHHHHc-CCC-CccCCCccCCCCCEeEEe
Confidence 34677889962 444 57899999999875 775 889999999999999884
No 54
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A*
Probab=95.80 E-value=0.0037 Score=70.59 Aligned_cols=102 Identities=11% Similarity=0.186 Sum_probs=71.8
Q ss_pred ceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeccccCceeeeCCCcccccceEecCCcEEecccccHHHHHH
Q 003040 241 GSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIE 320 (854)
Q Consensus 241 ~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~ 320 (854)
..+++|+|.+|+.++++. -...++++|||++...-.......+||++++..+..|..++..++++|++++.+|.+
T Consensus 22 ~~v~~P~s~~ev~~~v~~-----a~~v~~~G~G~s~~~~~~~~~~g~vi~l~~l~~i~~~d~~~~~v~v~aG~~l~~l~~ 96 (422)
T 2vfr_A 22 KELLRPHSLDALRALVAD-----SARVRVLGSGHSFNEIAEPGDGGVLLSLAGLPSVVDVDTAARTVRVGGGVRYAELAR 96 (422)
T ss_dssp SSCBCCSSHHHHHHHHHH-----CSSEEECSSCCCCSSTTCCCTTCEEECSTTSCCCEEEETTTTEEEEETTCBHHHHHH
T ss_pred CEEEeCCCHHHHHHHHHh-----CCCEEEEECCCCCCCCccCCCCcEEEEhhhCCCcEEEcCCCCEEEEcCCCCHHHHHH
Confidence 357899999999999984 256788899997754211123568999987554444455567899999999999999
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccc
Q 003040 321 ALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMA 365 (854)
Q Consensus 321 ~l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~a 365 (854)
.+.++ .+ .+..+.--+.+||||+|++.
T Consensus 97 ~l~~~----------Gl--------~l~~~~~~~~~tvGG~i~~~ 123 (422)
T 2vfr_A 97 VVHAR----------GL--------ALPNMASLPHISVAGSVATG 123 (422)
T ss_dssp HHHHT----------TE--------ECSCCCSSSCSBHHHHHHHT
T ss_pred HHHHc----------CC--------cccCCCCCCCeeHHHHHhcC
Confidence 87643 00 12222233668999999986
No 55
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A
Probab=95.69 E-value=0.041 Score=63.12 Aligned_cols=160 Identities=11% Similarity=0.042 Sum_probs=96.1
Q ss_pred CceEEecCCHHHHHHHHhhhcCCC--CCcceEEccCccceEeeccccCceeeeCCCcccccceEecCCcEEecccccHHH
Q 003040 240 KGSWHSPISVQELRNVLESVEGSN--QISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISK 317 (854)
Q Consensus 240 ~~~~~~P~sl~eal~ll~~~~~~~--~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~ 317 (854)
...+++|+|.+|+.++++.... . +-...+++||+++.-. .......+||++++..+..+..+++.++++|++++.+
T Consensus 43 p~~vv~P~s~eev~~~v~~a~~-~~~~~~v~~~G~G~s~~~~-~~~~~gvvIdl~~l~~i~~~d~~~~~v~v~aGv~l~~ 120 (481)
T 4feh_A 43 VANVLRTPDAEMIVKAVARVAE-SGGGRGAIARGLGRSYGDN-AQNGGGLVIDMTPLNTIHSIDADTKLVDIDAGVNLDQ 120 (481)
T ss_dssp EEEEEECSCHHHHHHHHHHHHT-TTCTTCEEEECSSCSSSST-TCCTTSEEEECTTCCCEEEEETTTTEEEEETTCBHHH
T ss_pred CCEEEeCCCHHHHHHHHHHHHH-cCCCceEEEEeCCcCCCCC-CCCcCeEEEECccCCCceEEcCCCCEEEEcCCccHHH
Confidence 3467899999999988774321 1 2467888999987311 0013568999988555444455567899999999999
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcC--cEEEEEeCCe-eE
Q 003040 318 AIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAG--AMVNIMTGQK-CE 394 (854)
Q Consensus 318 l~~~l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp~~~~sD~~~~LlAld--A~v~l~s~~g-~R 394 (854)
|.+.+.+. .-.++. .+.+ .-+||||+|++..-. .....-=...| -.+++...+| .+
T Consensus 121 L~~~l~~~--------Gl~l~~---------~~g~-~~~tvGGaia~~a~G---~~~~~~G~~~d~V~~~evV~~dG~v~ 179 (481)
T 4feh_A 121 LMKAALPF--------GLWVPV---------LPGT-RQVTVGGAIACDIHG---KNHHSAGSFGNHVRSMDLLTADGEIR 179 (481)
T ss_dssp HHHHHGGG--------TEECSC---------CCSC-SCCBHHHHHHTTCCC---TTHHHHCCGGGGEEEEEEECTTSCEE
T ss_pred HHHHHHHc--------CCEEEE---------eCCc-CccccCCccccccCC---CCcccCCCccceEeEEEEEeCCCCEE
Confidence 99886532 000110 1223 256999999875332 11000000112 2456666777 45
Q ss_pred EEehh----hhhc--CCCCCCCceEEEEEcCCCC
Q 003040 395 KLMLE----EFLE--RPPLDSRSILLSVEIPCWD 422 (854)
Q Consensus 395 ~vpl~----dF~~--~~~L~~~Eii~~I~iP~~~ 422 (854)
++.-+ |+|. ...+..--||+++.|...+
T Consensus 180 ~~s~~~~~~dLf~a~rgs~G~~GIIt~~tl~l~p 213 (481)
T 4feh_A 180 HLTPTGEDAELFWATVGGNGLTGIIMRATIEMTP 213 (481)
T ss_dssp EECSSSTTHHHHHHHTTCTTTTCEEEEEEEECEE
T ss_pred EeCCCCCChHHHHHhhccCCCceEEEEEEEEEEe
Confidence 55544 6443 3334445699999886543
No 56
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=95.24 E-value=0.017 Score=68.94 Aligned_cols=109 Identities=12% Similarity=0.084 Sum_probs=75.3
Q ss_pred ceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceE--ee--ccccCceeeeCCCcccccceEecCCcEEecccccHH
Q 003040 241 GSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGY--YK--EVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTIS 316 (854)
Q Consensus 241 ~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~--~k--~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~ 316 (854)
.-.++|.|.+|..++++-... .+-...+.+|||++.- .. ......++||++++..+..|..++..++++|+|++.
T Consensus 207 ~aVV~P~s~eeV~~iv~~A~~-~~ipVvprGgGTsl~GG~~~~~~~~~ggVvLDlsrMnrIleiD~~~~~atVeaGv~~~ 285 (658)
T 4bby_A 207 DIVLWPTCHDDVVKIVNLACK-YNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNRILWVDENNLTAHVEAGITGQ 285 (658)
T ss_dssp SEEEECCSHHHHHHHHHHHHH-TTCEEEEESSCCCSSSTTCCCTTCCSCEEEEECTTCCCEEEEETTTTEEEEETTCBHH
T ss_pred CEEEeeCCHHHHHHHHHHHHH-CCCeEEEECCCcCCCCCCCCCCCCCCcEEEEECccCCCcEEEcCCCCEEEEecCchHH
Confidence 467899999999988873210 1234667799998742 11 112334789999866555666678899999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccC
Q 003040 317 KAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQR 367 (854)
Q Consensus 317 ~l~~~l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp 367 (854)
+|.+.++++-- .+| -.|+=...+||||||++.+.
T Consensus 286 ~L~~~L~~~Gl--------~lp---------~dP~S~~~aTIGG~iAtna~ 319 (658)
T 4bby_A 286 ELERQLKESGY--------CTG---------HEPDSLEFSTVGGWISTRAS 319 (658)
T ss_dssp HHHHHHHHHTE--------ECC---------CCCTTTTTCBHHHHHHHTCC
T ss_pred HHHHHHHHcCC--------ccC---------CCCCCccccEEeehhhcCCC
Confidence 99998765411 011 13455678999999998765
No 57
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}
Probab=95.10 E-value=0.027 Score=51.45 Aligned_cols=42 Identities=31% Similarity=0.684 Sum_probs=33.4
Q ss_pred CCEEEEEecCCCCCcHHHHHhhccCCcccccCCC-CCCCCccEEEEee
Q 003040 19 NGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCG-EGGCGACVVLLSK 65 (854)
Q Consensus 19 Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~-~G~CGaCtV~v~~ 65 (854)
||+.++ +.+++|||+.+++. |+. ....|+ .|.||.|.|.|..
T Consensus 15 ~~~~v~---~~~g~tlL~aa~~~-Gi~-i~~~C~g~G~CgtC~v~v~~ 57 (113)
T 3ah7_A 15 EGLTVE---VKPGTNILELAHDH-HIE-MESACGGVKACTTCHCIVRK 57 (113)
T ss_dssp TCEEEE---CCTTCBHHHHHHHT-TCC-CCCTTCSSSSCSTTEEEEEE
T ss_pred CCeEEE---ECCCCcHHHHHHHc-CCC-CCcCCCCCCCcCCCEEEEcC
Confidence 445444 57899999999865 764 889998 6999999999853
No 58
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=95.07 E-value=0.019 Score=62.41 Aligned_cols=48 Identities=21% Similarity=0.446 Sum_probs=38.6
Q ss_pred EEEEEC---CEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEe
Q 003040 14 VVFAVN---GEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLS 64 (854)
Q Consensus 14 i~f~~N---g~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~ 64 (854)
.+++++ |..++++ +.+++|||+.+++. |+. ....|+.|.||.|.|.|.
T Consensus 4 ~~v~~~~~~~~~~~~~-~~~g~tll~a~~~~-gi~-i~~~C~~g~Cg~C~v~v~ 54 (338)
T 1krh_A 4 HQVALQFEDGVTRFIC-IAQGETLSDAAYRQ-QIN-IPMDCREGECGTCRAFCE 54 (338)
T ss_dssp EEEEEECTTSCEEEEE-ECTTCCHHHHHHHT-TCC-CSCSCSSSSSCTTEEEEE
T ss_pred eEEEEEEcCCCcEEEE-eCCCCcHHHHHHHc-CCC-cccCCCCcCCCCCEEEEe
Confidence 345555 6666776 67899999999875 775 889999999999999983
No 59
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=94.73 E-value=0.015 Score=66.80 Aligned_cols=106 Identities=18% Similarity=0.187 Sum_probs=73.2
Q ss_pred ceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceE--eeccccCceeeeCCCcccccceEecCCcEEecccccHHHH
Q 003040 241 GSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGY--YKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKA 318 (854)
Q Consensus 241 ~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~--~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l 318 (854)
..+++|+|.+|+.++++-... .+-...+.+|||++.- .. .....+||++++.....|..++..++++|++++.+|
T Consensus 53 ~~vv~P~s~eeV~~~v~~a~~-~~~pv~~~GgGt~~~g~~~~--~~ggvvIdl~~m~~i~~id~~~~~v~V~aGv~~~~l 129 (476)
T 3pm9_A 53 PLVLRPGSTEEVVAICKLANE-ARVALVPQGGNTGLVGGQTP--HNGEVVISLKRMDKIREIDTSSNTITVEAGAILQRV 129 (476)
T ss_dssp SCEECCCSHHHHHHHHHHHHH-HTCCEEEESSSCCSSSTTCC--CSSCEEEECTTCCCEEEEETTTTEEEEETTCBHHHH
T ss_pred CEEEecCCHHHHHHHHHHHHH-cCCeEEEEeCCCCCCCCccC--CCCcEEEEeeCCCceEEEcCCCCeEEECCCcCHHHH
Confidence 457899999999887763210 1346788899999841 11 123689999986555555566788999999999999
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHHHHHHhc-cccccCCcccCCccccccC
Q 003040 319 IEALKEETKEFHSEALMVFKKIAGHMEKIA-SRFIRNSASVGGNLVMAQR 367 (854)
Q Consensus 319 ~~~l~~~~~~~~~~~~~~~p~L~~~l~~ia-s~qIRN~aTiGGNl~~asp 367 (854)
.+.+.+.- . .++ .+.-...+||||++++...
T Consensus 130 ~~~l~~~G---------l---------~~~~~~~s~~~~tvGG~ia~nag 161 (476)
T 3pm9_A 130 QEKAAEVD---------R---------LFPLSLGAQGSCTIGGNLSTNAG 161 (476)
T ss_dssp HHHHHHTT---------E---------ECCCCCTTTTTCBHHHHHHHTCC
T ss_pred HHHHHHhC---------C---------ccCCCCCCCCcEEEccccCCCCC
Confidence 98876430 0 111 2334567999999987654
No 60
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=94.58 E-value=0.027 Score=66.21 Aligned_cols=109 Identities=13% Similarity=0.109 Sum_probs=71.5
Q ss_pred ceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceE--eecc-ccCceeeeCCCcccccceEecCCcEEecccccHHH
Q 003040 241 GSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGY--YKEV-EHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISK 317 (854)
Q Consensus 241 ~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~--~k~~-~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~ 317 (854)
..+++|+|.+|+.++++-... .+-...+.+|||++.- .... ....++||++++..+..|..++..++++|++++.+
T Consensus 139 ~~vv~P~s~eeV~~iv~~a~~-~~~pv~~~GgGts~~gg~~~~~~~~g~vvidl~~mn~I~~id~~~~~v~v~aGv~~~~ 217 (584)
T 2uuu_A 139 DLIVLPHSHEEVERLVQLAHK-YNVVIIPMGGGSNIVGAIEPVSNERFTVSIDMRRMNKVLWVDRREMTACIQVGIMGPE 217 (584)
T ss_dssp SEEECCCSHHHHHHHHHHHHH-HTCEEEEESSCCCSSCTTSCCCCSSCEEEEECTTCCCEEEEETTTTEEEEETTCBHHH
T ss_pred CEEEeCCCHHHHHHHHHHHHH-cCCeEEEEeCCCCCCCCCcccCCCCCEEEEECCCCCccEEEcCCCCEEEECCCCcHHH
Confidence 457899999999888763210 1345778899999852 1111 12346899987655444455567899999999999
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccC
Q 003040 318 AIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQR 367 (854)
Q Consensus 318 l~~~l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp 367 (854)
|.+.+.+.- ..+ -..|.-...+||||++++...
T Consensus 218 l~~~l~~~G--------l~~---------~~~p~s~~~~tvGG~ia~na~ 250 (584)
T 2uuu_A 218 LEKQLHKQG--------VSL---------GHDPDSFEFSTLGGWLATCSS 250 (584)
T ss_dssp HHHHHHHTT--------EEC---------CCCCTTGGGCBHHHHHHHTCC
T ss_pred HHHHHHHcC--------Cee---------CcCCCccCCeeEeeeccCCCC
Confidence 998876431 011 012222345899999988765
No 61
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A*
Probab=94.51 E-value=0.054 Score=57.28 Aligned_cols=146 Identities=14% Similarity=0.090 Sum_probs=88.8
Q ss_pred eecC-CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeccccC-ceeeeCCCcccccceEecCCcEEecccc
Q 003040 236 LLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHY-DKYIDIRYIPELSVIRRDQTGIEIGATV 313 (854)
Q Consensus 236 ~~~~-~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~-~~lIdl~~I~EL~~I~~~~~~l~IGA~v 313 (854)
.+.+ .. +++|+|.+|+.+++. -...++.|||.+..-.. ... ..+|++++ |+.|+.+ + ++||++
T Consensus 18 ~igg~a~-vv~p~s~edv~~~v~-------ipv~v~GgGsnll~~d~-~~~~GvVI~l~~---~~~I~vd-~--~v~aG~ 82 (268)
T 2gqt_A 18 GVGGPAE-LWTVETREELKRATE-------APYRVLGNGSNLLVLDE-GVPERVIRLAGE---FQTYDLK-G--WVGAGT 82 (268)
T ss_dssp CCCCEEE-EEEECSHHHHHHHTT-------SCEEECSSSSSEEECTT-CCSSEEEEECGG---GGCBCTT-S--EEETTS
T ss_pred ccCcceE-EEEeCCHHHHHHHhC-------CCeEEcCCCcCceecCC-CcCCeEEEEcCC---CCCcEEc-C--EEECCC
Confidence 3444 34 999999999999882 46788999998865322 233 68999864 6666654 3 999999
Q ss_pred cHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCe-
Q 003040 314 TISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQK- 392 (854)
Q Consensus 314 Tl~~l~~~l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp~~~~sD~~~~LlAldA~v~l~s~~g- 392 (854)
++.+|.+.+.+. .+. -+...+... +||||++++.... |-..+.-.+ + .|++. .+|
T Consensus 83 ~~~~l~~~~~~~----------Gl~----Gle~~~giP----GtvGGav~~NaGa-yG~e~~d~v--~--~v~vv-~~G~ 138 (268)
T 2gqt_A 83 LLPLLVQEAARA----------GLS----GLEGLLGIP----AQVGGAVKMNAGT-RFGEMADAL--E--AVEVF-HDGA 138 (268)
T ss_dssp BHHHHHHHHHHT----------TEE----SCGGGTTCC----CBHHHHHHTTCEE-TTEEGGGGE--E--EEEEE-ETTE
T ss_pred CHHHHHHHHHHc----------CCc----CCccccCcc----chhHHHHHhcccc-CchhHHhhe--e--EEEEE-CCCc
Confidence 999999876543 110 112233333 6999998876442 111111111 1 34444 556
Q ss_pred eEEEehhh-hhc--CCCCC-CCceEEEEEcCCC
Q 003040 393 CEKLMLEE-FLE--RPPLD-SRSILLSVEIPCW 421 (854)
Q Consensus 393 ~R~vpl~d-F~~--~~~L~-~~Eii~~I~iP~~ 421 (854)
.++++-+| +|. ...+. .+ ||+++.+...
T Consensus 139 v~~~~~~~l~~~YR~s~~~~~g-IVt~~~~~L~ 170 (268)
T 2gqt_A 139 FHVYCPEELGFGYRKSHLPPGG-IVTRVRLKLK 170 (268)
T ss_dssp EEEECGGGSCCBTTBCCCSTTC-EEEEEEECCE
T ss_pred EEEEchHHcccccCCCCcCCCc-eEEEEEEEEE
Confidence 56677666 343 22222 24 8888877654
No 62
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae}
Probab=94.39 E-value=0.063 Score=59.11 Aligned_cols=107 Identities=11% Similarity=0.085 Sum_probs=70.8
Q ss_pred eecC-CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeccccCceeeeCCCcccccceEec----CCcEEec
Q 003040 236 LLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRD----QTGIEIG 310 (854)
Q Consensus 236 ~~~~-~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~----~~~l~IG 310 (854)
.+.+ ...+++|.|.+|+.++++.... .+-...++.||+.+.+-.. ....+|+++ |+.|+.+ +..+++|
T Consensus 26 ~igg~a~~vv~p~s~eel~~~v~~a~~-~~ipv~vlGgGSNll~~d~--~~GvVI~l~----~~~i~v~~~~~~~~v~v~ 98 (357)
T 3i99_A 26 GIEQLAAQLVVAESIDDLKALYCSAEW-ASLPKLIIGKGSNMLFTCH--YTGMIVVNR----LNGIEHQQDDDYHRLHVA 98 (357)
T ss_dssp CCSCEEEEEEEECSHHHHHHHHSSSTT-TTSCEEEESSCTTEEECSC--EEEEEEEEC----CCCEEEEECSSEEEEEEE
T ss_pred CCCccceEEEEECCHHHHHHHHHHHHH-cCCCEEEECCCcCcccCCC--CCeEEEEcC----CCceEEeccCCceEEEEe
Confidence 3444 4578999999999999874211 2346788999998865322 346788885 4555443 2379999
Q ss_pred ccccHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccC
Q 003040 311 ATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQR 367 (854)
Q Consensus 311 A~vTl~~l~~~l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp 367 (854)
|++++.+|.+.+.+. .+. -+...++.. +||||++++...
T Consensus 99 AG~~~~~l~~~a~~~----------Gl~----GlE~l~gIP----GtVGGav~~NaG 137 (357)
T 3i99_A 99 GGEDWPSLVSWCVEQ----------GIG----GLENLALIP----GCAGSAPIQNIG 137 (357)
T ss_dssp TTSBHHHHHHHHHHT----------TCT----TCGGGTTCC----SBGGGTTTTTCE
T ss_pred CCCcHHHHHHHHHHc----------CCc----CccccCCCC----chhHHHHHhchh
Confidence 999999999876543 110 122333333 799999987644
No 63
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=94.01 E-value=0.04 Score=59.62 Aligned_cols=48 Identities=23% Similarity=0.499 Sum_probs=36.0
Q ss_pred EEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEe
Q 003040 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLS 64 (854)
Q Consensus 14 i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~ 64 (854)
+++++.+...+++ +.+++|||+.|++. |+. ...+|+.|.||.|.|-|.
T Consensus 238 ~~v~~~~~~~~~~-~~~~~~ll~a~~~~-g~~-~~~~C~~G~Cg~C~~~v~ 285 (321)
T 2pia_A 238 FTVRLSRSGTSFE-IPANRSILEVLRDA-NVR-VPSSCESGTCGSCKTALC 285 (321)
T ss_dssp EEEEETTTCCEEE-ECTTSCHHHHHHHT-TCC-CCCSCSSSSSCTTEEEEE
T ss_pred EEEEEeCCCeEEE-ECCCCcHHHHHHHc-CCC-CCCCCCCCCCCCCEEEEe
Confidence 4444543333443 46899999999864 766 889999999999999884
No 64
>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} SCOP: d.15.4.1 PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A
Probab=93.87 E-value=0.013 Score=54.73 Aligned_cols=49 Identities=18% Similarity=0.450 Sum_probs=12.1
Q ss_pred EEEEE-ECCEEEEEecCCCCCcHHHHHhhccCCcccc--cCCC-CCCCCccEEEEe
Q 003040 13 SVVFA-VNGEKFEVSSVDPSTTLLEFLRYHTRFKSVK--LGCG-EGGCGACVVLLS 64 (854)
Q Consensus 13 ~i~f~-~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k--~gC~-~G~CGaCtV~v~ 64 (854)
+|+|. -+|+.++++ +.++++|++.+++. |+. .. ..|+ .|.||.|-|.|.
T Consensus 7 ~Vtf~~~~G~~~~v~-~~~G~tLl~aa~~~-gi~-i~g~~~CgG~g~CgtC~v~v~ 59 (123)
T 3n9z_C 7 TVHFINRDGETLTTK-GKVGDSLLDVVVEN-NLD-IDGFGACEGTLACSTCHLIFE 59 (123)
T ss_dssp ---------------------------------------CTTCSSSSCSTTBC---
T ss_pred EEEEEeCCCCEEEEE-ECCCCcHHHHHHHc-CCC-CCcCCCCCCCCEeCCCeeEEe
Confidence 46665 589888887 78999999999875 655 45 7898 899999999885
No 65
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Probab=93.39 E-value=0.046 Score=63.91 Aligned_cols=108 Identities=12% Similarity=0.077 Sum_probs=70.3
Q ss_pred CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeecc---ccCceeeeC-CCcccccceEecCCcEEecccccH
Q 003040 240 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEV---EHYDKYIDI-RYIPELSVIRRDQTGIEIGATVTI 315 (854)
Q Consensus 240 ~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~---~~~~~lIdl-~~I~EL~~I~~~~~~l~IGA~vTl 315 (854)
...+++|.|.+|+.++++-... .+-...+.+|||.+.+ ... .....+||+ +++..+..|..++..+++++++++
T Consensus 71 p~~Vv~P~s~~eV~~iv~~a~~-~~~pv~~~g~Gt~~~~-gg~~p~~~~gvvidl~~~mn~il~id~~~~~v~v~aGv~~ 148 (560)
T 1e8g_A 71 ASAIVAPRNVADVQSIVGLANK-FSFPLWPISIGRNSGY-GGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTY 148 (560)
T ss_dssp CSEEECCSSHHHHHHHHHHHHH-HTCCEEEESSCCCTTT-TTTCCSSTTCEEEECTTTCCCEEEEETTTTEEEECTTCBH
T ss_pred CcEEEeCCCHHHHHHHHHHHHH-cCCcEEEecCCCcCCc-CCCCCCcCCEEEEEchHhcCCeEEEcCCCCEEEEeCCCCH
Confidence 3468899999999888763210 1234556689998754 111 124689999 765443334445678999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH--hc-cccccCCcccCCccccccC
Q 003040 316 SKAIEALKEETKEFHSEALMVFKKIAGHMEK--IA-SRFIRNSASVGGNLVMAQR 367 (854)
Q Consensus 316 ~~l~~~l~~~~~~~~~~~~~~~p~L~~~l~~--ia-s~qIRN~aTiGGNl~~asp 367 (854)
.+|.+.+.+.- .. ++ .+.-.+.+|||||+++...
T Consensus 149 ~~l~~~l~~~G------------------l~~~~~~~p~~~~~~tigG~~~~~g~ 185 (560)
T 1e8g_A 149 HDLHNYLEANN------------------LRDKLWLDVPDLGGGSVLGNAVERGV 185 (560)
T ss_dssp HHHHHHHHHTT------------------CTTTEECCCCSSTTSBHHHHHHTTCB
T ss_pred HHHHHHHHHcC------------------CccccCCCCCCCCccchhhhccCCCC
Confidence 99998876430 01 11 2344458999999876543
No 66
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1
Probab=93.20 E-value=0.056 Score=63.24 Aligned_cols=109 Identities=21% Similarity=0.073 Sum_probs=68.0
Q ss_pred ceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceE--eecc---ccCceeeeCCCcccccceEecCCcEEecccccH
Q 003040 241 GSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGY--YKEV---EHYDKYIDIRYIPELSVIRRDQTGIEIGATVTI 315 (854)
Q Consensus 241 ~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~--~k~~---~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl 315 (854)
...++|.|.+|+.++++-... .+-...+.+|||++.- .... .+..++||++++..+..|. ++..++++|++++
T Consensus 47 ~~Vv~P~s~~eV~~iv~~a~~-~~~~v~~~GgGt~~~G~~~~~~~~~~r~gvvIdl~rmn~I~~id-~~~~v~v~aGv~l 124 (571)
T 1f0x_A 47 LAVVFPGSLLELWRVLKACVT-ADKIILMQAANTGLTEGSTPNGNDYDRDVVIISTLRLDKLHVLG-KGEQVLAYPGTTL 124 (571)
T ss_dssp SEEECCSSHHHHHHHHHHHHH-TTCEEEEESSCCCSSSTTSCCBSCCSSCEEEEECTTCCCEEEET-TTTEEEECTTCBH
T ss_pred cEEEeeCCHHHHHHHHHHHHH-cCCCEEEECCCcCCCCCccCCCcCCcCceEEEECcccCCceeEC-CCCeEEEcCCcCH
Confidence 457899999999988763211 1345677899999842 1110 1136899998754333333 3467999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccC
Q 003040 316 SKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQR 367 (854)
Q Consensus 316 ~~l~~~l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp 367 (854)
.+|.+.+.+.- ..+|. .+++.. ..+||||+|++.+.
T Consensus 125 ~~L~~~l~~~G--------l~~p~------~~g~s~--~~~tvGG~ia~nag 160 (571)
T 1f0x_A 125 YSLEKALKPLG--------REPHS------VIGSSC--IGASVIGGICNNSG 160 (571)
T ss_dssp HHHHHHHGGGT--------EECSC------CCGGGG--GTCBHHHHHHTTCC
T ss_pred HHHHHHHHhcC--------ccCCc------CCCccC--CCceecccccCCCC
Confidence 99999875431 00100 011111 36799999987643
No 67
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=92.95 E-value=0.058 Score=62.48 Aligned_cols=106 Identities=13% Similarity=0.176 Sum_probs=68.2
Q ss_pred ceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeecc---ccCceeeeCCCcccccceEecCCcEEecccccHHH
Q 003040 241 GSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEV---EHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISK 317 (854)
Q Consensus 241 ~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~---~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~ 317 (854)
..+++|+|.+|+.++++-... .+-...+++|||.+.+ ... .....+||++++..+..|..++..++++|++++.+
T Consensus 58 ~~vv~P~s~~ev~~~v~~a~~-~~~pv~~~g~G~~~~~-g~~~~~~~~gvvidl~~m~~i~~id~~~~~v~v~aGv~~~~ 135 (520)
T 1wvf_A 58 SAAVTATTVEQVQGVVKICNE-HKIPIWTISTGRNFGY-GSAAPVQRGQVILDLKKMNKIIKIDPEMCYALVEPGVTFGQ 135 (520)
T ss_dssp SEEEECCSHHHHHHHHHHHHH-HTCCEEEESSCCCTTT-TTTSCSSTTCEEEECTTCCCEEEEETTTTEEEECTTCCHHH
T ss_pred CEEEecCCHHHHHHHHHHHHH-CCCcEEEEcCCCCCCC-CCCCCCCCCeEEEECCCCCceEEECCCCCEEEECCCCCHHH
Confidence 468899999999887763210 1234567779998853 110 13468999986544333344467899999999999
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHHHHHHhcc-ccccCCcccCCccccc
Q 003040 318 AIEALKEETKEFHSEALMVFKKIAGHMEKIAS-RFIRNSASVGGNLVMA 365 (854)
Q Consensus 318 l~~~l~~~~~~~~~~~~~~~p~L~~~l~~ias-~qIRN~aTiGGNl~~a 365 (854)
|.+.+.+.- .+ ...+ +.-.+.+|||||+++.
T Consensus 136 l~~~l~~~G---------l~--------~~~~~~p~~~~~~igG~~~~~ 167 (520)
T 1wvf_A 136 MYDYIQENN---------LP--------VMLSFSAPSAIAGPVGNTMDR 167 (520)
T ss_dssp HHHHHHHTT---------CS--------EECCCCSSCTTCCHHHHHHTT
T ss_pred HHHHHHHcC---------Cc--------ccCCCCCCCCeeeeeecccCC
Confidence 998876430 00 0111 2333489999998653
No 68
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A*
Probab=92.72 E-value=0.11 Score=60.15 Aligned_cols=152 Identities=11% Similarity=0.068 Sum_probs=89.7
Q ss_pred ceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeccc--cCceeeeCCCcccccceEe-----cC--CcEEecc
Q 003040 241 GSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVE--HYDKYIDIRYIPELSVIRR-----DQ--TGIEIGA 311 (854)
Q Consensus 241 ~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~--~~~~lIdl~~I~EL~~I~~-----~~--~~l~IGA 311 (854)
...++|+|.+|+.++++-.....+-...+.+|||++. ... ....+||++++..+ .|.. ++ ..++++|
T Consensus 63 ~~vv~P~s~eeV~~iv~~a~~~~~~~v~~~GgGts~~---g~~~~~~gvvidl~~m~~i-~i~~~~~~~~~~~~~v~v~a 138 (524)
T 2exr_A 63 LAVVRPVGPEDIAGAVKAALRSDKLTVAARGNGHSIN---GQAMAEGGLVVDMSTTAEN-HFEVGYLSGGDATAFVDVSG 138 (524)
T ss_dssp SEEEECSSHHHHHHHHHHHHHSSSCCEEEESSSCCSS---STTCCTTSEEEEGGGGTTS-CEEEEECCSSSSSEEEEEET
T ss_pred CEEEecCCHHHHHHHHHHHHhhcCceEEEECCCcCCC---CcccCCCEEEEECcCCCCc-EEeecccCCCCCceEEEEeC
Confidence 4678999999999888742100134577889999985 211 23689999866555 4555 33 5799999
Q ss_pred cccHHHHHHH-HHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCC------CCCCchHHHHHhcCcE
Q 003040 312 TVTISKAIEA-LKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRK------HFPSDVATVLLGAGAM 384 (854)
Q Consensus 312 ~vTl~~l~~~-l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp~------~~~sD~~~~LlAldA~ 384 (854)
++++.++.+. ++++ .+ ...++.--+.+||||+|++.... +...|.. -.
T Consensus 139 Gv~~~~l~~~~l~~~----------Gl--------~~~~~~s~~~~tiGG~va~ng~G~~~~~yG~~~d~V-------~~ 193 (524)
T 2exr_A 139 GALWEDVLKRCVSEY----------GL--------APRSWTDYLGLTVGGTLSNAGVSGQAFRYGPQTSNV-------TE 193 (524)
T ss_dssp TCBHHHHHHHHHHHH----------SE--------ECSCCCSCCSSBHHHHHTTCCCCTTHHHHCCGGGSE-------EE
T ss_pred CcCHHHHHHHHHHHc----------CC--------CCCCCCcCCceeecccCCCCCCcccccccCcHhhhE-------EE
Confidence 9999998554 3222 00 02334444679999999986432 1112211 24
Q ss_pred EEEEeCCee-EEEeh---hhhhc--CCCCCCCceEEEEEcCCC
Q 003040 385 VNIMTGQKC-EKLML---EEFLE--RPPLDSRSILLSVEIPCW 421 (854)
Q Consensus 385 v~l~s~~g~-R~vpl---~dF~~--~~~L~~~Eii~~I~iP~~ 421 (854)
+++...+|+ .+..- .|+|. ......--|||++.+...
T Consensus 194 l~vV~~dG~v~~~~~~~~~dL~~~~~Gs~GtlGiIt~~tl~l~ 236 (524)
T 2exr_A 194 LDVVTGNGDVVTCSEIENSELFFSVLGGLGQFGIITRARVLLQ 236 (524)
T ss_dssp EEEEETTSCEEEEESSSSHHHHHHHTTCTTSSEEEEEEEEEEE
T ss_pred EEEEecCCeEEEECCCCChhHHhHhhcCCCccEEEEEEEEEEE
Confidence 455556774 23332 24332 222233458888777543
No 69
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP}
Probab=92.55 E-value=0.12 Score=59.89 Aligned_cols=156 Identities=11% Similarity=0.092 Sum_probs=91.7
Q ss_pred CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceE--eeccc--cCceeeeCC-CcccccceEec--CCcEEeccc
Q 003040 240 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGY--YKEVE--HYDKYIDIR-YIPELSVIRRD--QTGIEIGAT 312 (854)
Q Consensus 240 ~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~--~k~~~--~~~~lIdl~-~I~EL~~I~~~--~~~l~IGA~ 312 (854)
...+++|+|.+|+.++++.... .+-..++++||+++.- ..... ....+||++ ++..+ .|..+ ...+++||+
T Consensus 30 P~~vv~P~s~eEV~~~Vk~A~~-~~~pv~v~GgGhs~~~l~~~gG~~~~~GVvIdls~~Ln~I-~vD~~~~~~tVtV~AG 107 (540)
T 3js8_A 30 DVWTCAPRSADEVVKVANWAKD-NGYKVRARGMMHNWSPLTLAAGVSCPAVVLLDTTRYLTAM-SIDASGPVAKVTAQAG 107 (540)
T ss_dssp EEEEECCSSHHHHHHHHHHHHH-HTCEEEEECSCCCSSCSSCCTTCSSCSEEEEETTTTCCCE-EEECSSSSEEEEEETT
T ss_pred ccEEEEcCCHHHHHHHHHHHHH-cCCeEEEEeCCCCcccccccCCCCCCCeEEEECcCcCCCE-EECCCCCccEEEEccC
Confidence 4567999999999888763211 1346788899999852 22211 234789995 55544 33332 258999999
Q ss_pred ccHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhc-cccccCCcccCCcccccc-CC---------------CCCCchH
Q 003040 313 VTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIA-SRFIRNSASVGGNLVMAQ-RK---------------HFPSDVA 375 (854)
Q Consensus 313 vTl~~l~~~l~~~~~~~~~~~~~~~p~L~~~l~~ia-s~qIRN~aTiGGNl~~as-p~---------------~~~sD~~ 375 (854)
+++.+|.+.+.+.- + .+. .+.+ ..+||||.|++.. .. +..+|
T Consensus 108 v~l~~L~~~L~~~G----------L--------~l~~~~gi-~~~TVGGaia~gagG~~~~~~G~~~~~g~~~G~~~D-- 166 (540)
T 3js8_A 108 ITMEALLTGLEKAG----------L--------GVTAAPAP-GDLTLGGVLAINGHGTAIPAKGERRLAGASYGSISN-- 166 (540)
T ss_dssp SBHHHHHHHHHHTT----------E--------ECSCCCSC-SCSBHHHHHHTTCCCCBCCCTTCCCCTTCCSSCGGG--
T ss_pred CCHHHHHHHHHHcC----------C--------EEEecCCC-CCeEEcccccCCCCcccccccccccccccccccHHH--
Confidence 99999998876430 0 011 1223 4589999997642 21 11233
Q ss_pred HHHHhcCcEEEEEeCC----eeEEEehh--hhhc-CCCCCCCceEEEEEcCCCC
Q 003040 376 TVLLGAGAMVNIMTGQ----KCEKLMLE--EFLE-RPPLDSRSILLSVEIPCWD 422 (854)
Q Consensus 376 ~~LlAldA~v~l~s~~----g~R~vpl~--dF~~-~~~L~~~Eii~~I~iP~~~ 422 (854)
..++.+|.+.++. ..++++-+ ||+. ...+..+ ||+++.+...+
T Consensus 167 ---~V~~levV~adG~~~~~~i~~~s~~~~DL~a~r~G~G~g-IVTevtlrl~P 216 (540)
T 3js8_A 167 ---LVLSLTAVVYDKASGAYALRKFARNDPQIAPLLAHVGRS-LIVEATLQAAP 216 (540)
T ss_dssp ---GEEEEEEEEEETTTTEEEEEEEETTSGGGHHHHTCTTSS-CEEEEEEEEEE
T ss_pred ---hEEEEEEEcCCCCCceeeEEEeCCCChhHHHHHhcCCCe-EEEEEEEEEEE
Confidence 2344455444443 24555532 4432 2223445 99999886543
No 70
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A*
Probab=92.41 E-value=0.077 Score=62.04 Aligned_cols=106 Identities=12% Similarity=0.121 Sum_probs=69.9
Q ss_pred CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceE--eecc--ccCceeeeC-CCcccccceEe--cCCcEEeccc
Q 003040 240 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGY--YKEV--EHYDKYIDI-RYIPELSVIRR--DQTGIEIGAT 312 (854)
Q Consensus 240 ~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~--~k~~--~~~~~lIdl-~~I~EL~~I~~--~~~~l~IGA~ 312 (854)
...+++|+|.+|+.++++.... .+-..++++||+++.- +... .....+||+ +++..+ .|.. +...++++|+
T Consensus 36 p~~vv~P~s~~ev~~~v~~a~~-~~~~v~~~G~G~s~~~~~l~~~~~~~~gvvIdl~~~l~~i-~vd~~~~~~~v~v~aG 113 (561)
T 2i0k_A 36 ATWVCSPKTPQDVVRLANWAHE-HDYKIRPRGAMAGWTPLTVEKGANVEKVILADTMTHLNGI-TVNTGGPVATVTAGAG 113 (561)
T ss_dssp EEEEECCSSHHHHHHHHHHHHH-HTCEEEEECCCCCCCTTSSCTTCCCTTEEEEECTTTSCCE-EEECCSSSCEEEEETT
T ss_pred CCEEEecCCHHHHHHHHHHHHH-CCCcEEEECCCCCcccccccCCCcCCCeEEEechhhCCce-EecCcCCccEEEEcCC
Confidence 3467999999999988764211 1346788899999742 2121 124579999 776554 4444 4578999999
Q ss_pred ccHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccc
Q 003040 313 VTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMA 365 (854)
Q Consensus 313 vTl~~l~~~l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~a 365 (854)
+++.+|.+.+.++- ..+|. .+.+ ..+||||.|++.
T Consensus 114 v~l~~L~~~l~~~G--------l~l~~---------~~~~-~~~TvGG~i~~~ 148 (561)
T 2i0k_A 114 ASIEAIVTELQKHD--------LGWAN---------LPAP-GVLSIGGALAVN 148 (561)
T ss_dssp SBHHHHHHHHHHTT--------EECSS---------CCSC-TTCBHHHHHHTT
T ss_pred CCHHHHHHHHHHcC--------Ccccc---------cCCC-CCcccCCCcccC
Confidence 99999998876430 00111 1222 568999999765
No 71
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=91.68 E-value=0.19 Score=57.58 Aligned_cols=70 Identities=13% Similarity=0.094 Sum_probs=48.8
Q ss_pred eEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcc----cccCCCCCC--CCccEEEEeecCCCcccCCcee-ecccccc
Q 003040 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKS----VKLGCGEGG--CGACVVLLSKYNPELDQLEDFT-ISSCLTL 84 (854)
Q Consensus 12 ~~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g----~k~gC~~G~--CGaCtV~v~~~~~~~~~~~~~~-v~sCl~~ 84 (854)
.+++|++||+.+++. +++||++.|+.. |..- .+. =..|. ||+|.|-| ++.+ +++|.++
T Consensus 14 ~~v~~~~dg~~~~~~---~g~ti~~a~~~~-g~~~~~~~~~~-~p~g~~~~~~c~v~v----------~g~~~~~ac~~~ 78 (493)
T 1y56_A 14 KKVTIYFEGKELEAY---EGEKLPVALLAN-EIYWLTTSNEG-RKRGAFTFGPVPMTV----------NGVKGLEARRIK 78 (493)
T ss_dssp CEEEEEETTEEEEEE---TTCBHHHHHHHT-TCCCCEECTTS-CEECSSSSSCCEEBS----------SSCTTEEGGGCB
T ss_pred CeEEEEECCEEEEec---CCCHHHHHHHHC-CCceecCCCCC-CCCccccceEEEEEE----------CCEecccceeEE
Confidence 469999999998874 699999998754 4311 222 12344 88999988 3333 8899999
Q ss_pred hhhccCceeEEecC
Q 003040 85 LCSVNGCLITTSEG 98 (854)
Q Consensus 85 ~~~~~g~~i~TvEg 98 (854)
+ .+|..+.|-.+
T Consensus 79 v--~~Gm~v~t~~~ 90 (493)
T 1y56_A 79 V--KDGMKIERQGY 90 (493)
T ss_dssp C--CTTCEEBCCCT
T ss_pred c--ccCcEEecccC
Confidence 6 46877776443
No 72
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}
Probab=90.50 E-value=0.25 Score=58.06 Aligned_cols=48 Identities=29% Similarity=0.621 Sum_probs=39.8
Q ss_pred eEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCC-CCCCCccEEEEe
Q 003040 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCG-EGGCGACVVLLS 64 (854)
Q Consensus 12 ~~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~-~G~CGaCtV~v~ 64 (854)
..|+|.-+|+.+++ ++++|||+.+++. |+. ...+|+ .|.||.|.|.|.
T Consensus 4 ~~V~~~~sg~~v~v---~~G~tLLeAa~~a-Gi~-ip~~C~G~G~CGtC~v~V~ 52 (631)
T 3zyy_X 4 YKVLFKPDQKEVAI---SENTNLMEALNLA-GIN-IKTVCGGAGTCGKCLVRVV 52 (631)
T ss_dssp EEEEEETTTEEEEE---CTTSCHHHHHHHH-TCC-CCCSCCCSSCCSTTEEEEE
T ss_pred eEEEEecCCeEEEE---CCCCcHHHHHHHc-CCC-CCcCCCCCCcCCCCEEEEe
Confidence 35778878877665 5799999999875 774 889999 999999999884
No 73
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A*
Probab=90.35 E-value=0.12 Score=60.00 Aligned_cols=156 Identities=11% Similarity=0.034 Sum_probs=91.0
Q ss_pred ceEEecCCHHHHHHHHhhhcC-CC-CCcceEEccCccceEeeccccCceeeeCCCccccc---ceEec--CCcEEecccc
Q 003040 241 GSWHSPISVQELRNVLESVEG-SN-QISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELS---VIRRD--QTGIEIGATV 313 (854)
Q Consensus 241 ~~~~~P~sl~eal~ll~~~~~-~~-~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~---~I~~~--~~~l~IGA~v 313 (854)
...++|+|.+|+.++++-... .. +-...+.+|||++.-... .....+||++++..+. .++.+ +..+++||++
T Consensus 70 ~~vv~P~s~~ev~~~v~~a~~~~~~~~~v~~~G~G~~~~g~~~-~~~gvvi~l~~m~~i~~~~~~~~d~~~~~v~v~aGv 148 (534)
T 1w1o_A 70 AAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAF-APGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQ 148 (534)
T ss_dssp SEEECCSSHHHHHHHHHHHHHCTTCCCCEEEESSCCCSSSTTC-CTTSEEEEGGGGGCSSSSCSEEECTTSSEEEEETTC
T ss_pred CEEEecCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCcC-CCCeEEEECccccccccCccEEEcCCCCEEEECCCc
Confidence 457899999999988774210 01 225677899999752111 2246899998655431 13443 4689999999
Q ss_pred cHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCC------CCCCchHHHHHhcCcEEEE
Q 003040 314 TISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRK------HFPSDVATVLLGAGAMVNI 387 (854)
Q Consensus 314 Tl~~l~~~l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp~------~~~sD~~~~LlAldA~v~l 387 (854)
++.++.+.+.++ .+ ...++.-...+||||++++.... +..+|.. -.+++
T Consensus 149 ~~~~l~~~~~~~----------Gl--------~~~~~~~~~~~tvGG~v~~~g~g~~~~~yG~~~d~v-------~~~ev 203 (534)
T 1w1o_A 149 VWIDVLRASLAR----------GV--------APRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNV-------LEMDV 203 (534)
T ss_dssp BHHHHHHHHHTT----------TE--------EESCCCSSCCSBHHHHHTTCCCSTTHHHHCCGGGSE-------EEEEE
T ss_pred CHHHHHHHHHHC----------CC--------cccCCCCCCCEEeceeccCCCccccccccccHhhhE-------EEEEE
Confidence 999998876532 00 12233333578999999975442 1112211 13455
Q ss_pred EeCCee-EEEeh---hhhhc--CCCCCCCceEEEEEcCCCC
Q 003040 388 MTGQKC-EKLML---EEFLE--RPPLDSRSILLSVEIPCWD 422 (854)
Q Consensus 388 ~s~~g~-R~vpl---~dF~~--~~~L~~~Eii~~I~iP~~~ 422 (854)
...+|+ .+..- .|.|. ......--|||++.+...+
T Consensus 204 V~~dG~v~~~~~~~~~dL~~~~rGs~G~~GIVt~~~l~l~p 244 (534)
T 1w1o_A 204 ITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEP 244 (534)
T ss_dssp EETTSCEEEEESSSSHHHHHHHTTCTTCSEEEEEEEEEEEE
T ss_pred EeCCccEEEECCCCChhhHhhhcCCCCCcEEEEEEEEEEEE
Confidence 557774 34443 34332 2222334589998875543
No 74
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A*
Probab=89.75 E-value=0.53 Score=53.75 Aligned_cols=84 Identities=4% Similarity=0.065 Sum_probs=59.3
Q ss_pred CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeec-cccCceeeeCCCcccccceEecCCcEEecccccHHHH
Q 003040 240 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKE-VEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKA 318 (854)
Q Consensus 240 ~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~-~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l 318 (854)
....++|+|.+|+.++++-... .+-...+.+||+++.-+.. ......+||++++.....|..++..+++||++++.+|
T Consensus 37 p~~vv~P~s~~dv~~~v~~a~~-~~~~v~v~ggGh~~~g~~~~~~~~~vvIdl~~~~~i~~vd~~~~~v~v~aG~~~~~l 115 (473)
T 3rja_A 37 PTAIAQTQTTAHIQSAVQCAKK-LNLKVSAKSGGHSYASFGFGGENGHLMVQLDRMIDVISYNDKTGIAHVEPGARLGHL 115 (473)
T ss_dssp CSEEEECCSHHHHHHHHHHHHH-TTCCEEEESSCCCTTCGGGTSSSSCEEEECTTCCCEEEEETTTTEEEECTTCBHHHH
T ss_pred CCEEEEeCCHHHHHHHHHHHHH-cCCeEEEEcCCCCCCCCcccCCCCeEEEECCCCCceEEEcCCCCEEEECCCCCHHHH
Confidence 4568999999999887763211 2456888999999752111 1234589999885444444445678999999999999
Q ss_pred HHHHHH
Q 003040 319 IEALKE 324 (854)
Q Consensus 319 ~~~l~~ 324 (854)
.+.+.+
T Consensus 116 ~~~l~~ 121 (473)
T 3rja_A 116 ATVLND 121 (473)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 75
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A*
Probab=88.36 E-value=0.76 Score=52.79 Aligned_cols=156 Identities=13% Similarity=0.086 Sum_probs=90.9
Q ss_pred CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeecc-ccCceeeeCCCcccccceEecCCcEEecccccHHHH
Q 003040 240 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEV-EHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKA 318 (854)
Q Consensus 240 ~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~-~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l 318 (854)
...+++|+|.+|+.++++-... .+-..++.+||+++.-.... .....+||++++..+ .|..++..+++||++|+.+|
T Consensus 46 P~~vv~P~s~~dV~~~v~~a~~-~~~~v~vrGgGh~~~g~~~~~~~ggvvIdl~~m~~i-~vd~~~~~v~V~aG~~l~~l 123 (495)
T 3fw9_A 46 PSAIILPGSKEELSNTIRCIRK-GSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRV-SIDLESETAWVESGSTLGEL 123 (495)
T ss_dssp CSEEECCCSHHHHHHHHHHHHT-SSCEEEEESSCCCTTCTTSCCSSCEEEEECTTCCCE-EEETTTTEEEEETTCBHHHH
T ss_pred CCEEEecCCHHHHHHHHHHHHH-cCCeEEEECCCcCCCCccccCCCCeEEEECCCCCcE-EEeCCCCEEEEcCCCCHHHH
Confidence 3568999999999888764321 23457888999997321110 123589999875444 34445678999999999999
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccCCcccCCccccccCC------CCCCchHHHHHhcCcEEEEEeCCe
Q 003040 319 IEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRK------HFPSDVATVLLGAGAMVNIMTGQK 392 (854)
Q Consensus 319 ~~~l~~~~~~~~~~~~~~~p~L~~~l~~ias~qIRN~aTiGGNl~~asp~------~~~sD~~~~LlAldA~v~l~s~~g 392 (854)
.+.+.+.-. .-.+| ..+-...+|||++....-. +...|.+ -.+++...+|
T Consensus 124 ~~~l~~~g~------gl~~~-----------~G~~~~vgigG~~~gGg~G~~~~~~G~~~D~v-------~~~~vV~adG 179 (495)
T 3fw9_A 124 YYAITESSS------KLGFT-----------AGWCPTVGTGGHISGGGFGMMSRKYGLAADNV-------VDAILIDANG 179 (495)
T ss_dssp HHHHHHHCS------SEECC-----------CCSCTTCBHHHHHHTCCCCTTHHHHCCGGGGE-------EEEEEECTTC
T ss_pred HHHHHHhcC------Cceec-----------cCCCCCCeEeeeccCCCCcccccCCCchhheE-------EEEEEEcCCC
Confidence 887653200 00011 1233566788887665432 1112221 2455566777
Q ss_pred eEEE---ehhhhhc--CC-CCCCCceEEEEEcCCC
Q 003040 393 CEKL---MLEEFLE--RP-PLDSRSILLSVEIPCW 421 (854)
Q Consensus 393 ~R~v---pl~dF~~--~~-~L~~~Eii~~I~iP~~ 421 (854)
+..- .=.|+|- .. ....--|||++.+...
T Consensus 180 ~i~~~~~~~~DLf~a~rGg~~g~~GIVt~~~l~l~ 214 (495)
T 3fw9_A 180 AILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLL 214 (495)
T ss_dssp CEECHHHHCHHHHHHHTTSCTTSSCEEEEEEEECE
T ss_pred CEEEcCCCChhhhhhhhcccCCCcEEEEEEEEEEE
Confidence 4332 1125442 22 2333459999888653
No 76
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A*
Probab=87.88 E-value=0.78 Score=53.12 Aligned_cols=82 Identities=12% Similarity=0.126 Sum_probs=56.8
Q ss_pred CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeccccCceeeeCCCcccccceEecCCcEEecccccHHHHH
Q 003040 240 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAI 319 (854)
Q Consensus 240 ~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~ 319 (854)
....++|+|.+|+.++++-... .+-...+.+||+++...........+||++++..+ .+..++..+++||++++.+|.
T Consensus 59 p~~vv~p~s~~dv~~~v~~a~~-~~~~v~v~ggGh~~~g~~~~~~~gvvIdl~~l~~i-~~d~~~~~v~v~aG~~~~~l~ 136 (530)
T 2y3s_A 59 PEEIHLVGSAAEIEQVLSRAVR-SGKRVAVRSGGHCYEDFVANSDVRVVMDMSRLSAV-GFDEERGAFAVEAGATLGAVY 136 (530)
T ss_dssp CSEEEECCSHHHHHHHHHHHHH-TTCCEEEESSCCCSSSTTTCTTCCEEEECTTCCCE-EEETTTTEEEEETTCBHHHHH
T ss_pred CCEEEecCCHHHHHHHHHHHHH-cCCcEEEECCCCCCCCCcccCCCeEEEEcccCCCE-EEcCCCCEEEEeCCCCHHHHH
Confidence 4567899999998887653211 24567889999987542211234689999875433 333344689999999999998
Q ss_pred HHHH
Q 003040 320 EALK 323 (854)
Q Consensus 320 ~~l~ 323 (854)
+.+.
T Consensus 137 ~~l~ 140 (530)
T 2y3s_A 137 KTLF 140 (530)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 77
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A*
Probab=87.70 E-value=0.67 Score=52.60 Aligned_cols=82 Identities=12% Similarity=0.161 Sum_probs=57.8
Q ss_pred CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeccccCceeeeCCCcccccceEecCCcEEecccccHHHHH
Q 003040 240 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAI 319 (854)
Q Consensus 240 ~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~ 319 (854)
...+++|+|.+|+.++++.... .+-...+.+||+++.-... .....+||++++..+ .+..++..+++||++++.+|.
T Consensus 39 p~~vv~p~s~~dv~~~v~~a~~-~~~~~~v~ggGh~~~~~~~-~~~gvvi~l~~l~~i-~~d~~~~~v~v~aG~~~~~l~ 115 (459)
T 2bvf_A 39 PSLIARCLSAGDVAKSVRYACD-NGLEISVRSGGHNPNGYAT-NDGGIVLDLRLMNSI-HIDTAGSRARIGGGVISGDLV 115 (459)
T ss_dssp CSEEEECCSHHHHHHHHHHHHH-HTCCEEEESSCCCTTCTTC-CSSSEEEECTTCCCE-EEETTTTEEEEETTCBHHHHH
T ss_pred CCEEEecCCHHHHHHHHHHHHH-cCCcEEEEcCCcCCCCccc-cCCeEEEECCCCCCE-EECCCCCEEEECCCCCHHHHH
Confidence 4567899999999887763210 1356788999999753211 335689999875444 233346689999999999999
Q ss_pred HHHHH
Q 003040 320 EALKE 324 (854)
Q Consensus 320 ~~l~~ 324 (854)
+.+.+
T Consensus 116 ~~l~~ 120 (459)
T 2bvf_A 116 KEAAK 120 (459)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 88653
No 78
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A*
Probab=86.89 E-value=0.91 Score=52.48 Aligned_cols=82 Identities=16% Similarity=0.152 Sum_probs=57.0
Q ss_pred CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeccccCceeeeCCCcccccceEecCCcEEecccccHHHHH
Q 003040 240 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAI 319 (854)
Q Consensus 240 ~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~ 319 (854)
....++|+|.+|+.++++-... .+-...+.+||+++...........+||++++..+ .+..++..++|||++++.+|.
T Consensus 58 p~~vv~p~s~~dv~~~v~~a~~-~~~~~~v~ggGh~~~g~~~~~~~gvvIdl~~m~~i-~~d~~~~~v~v~aG~~~~~l~ 135 (523)
T 2wdx_A 58 PDYIHLVGSTQQVADAVEETVR-TGKRVAVRSGGHCFEDFVDNPDVKVIIDMSLLTEI-AYDPSMNAFLIEPGNTLSEVY 135 (523)
T ss_dssp CSEEEECSSHHHHHHHHHHHHH-HTCCEEEESSCCCSSSSSSSTTCCEEEECTTCCCE-EEETTTTEEEECTTCBHHHHH
T ss_pred CCEEEEeCCHHHHHHHHHHHHH-cCCcEEEEcCCCCCCCCccCCCCeEEEEcccCCCE-EEcCCCCEEEEcCCCCHHHHH
Confidence 4568999999998887653210 13467888999987542211234689999875443 333346689999999999998
Q ss_pred HHHH
Q 003040 320 EALK 323 (854)
Q Consensus 320 ~~l~ 323 (854)
+.+.
T Consensus 136 ~~l~ 139 (523)
T 2wdx_A 136 EKLY 139 (523)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 79
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus}
Probab=86.61 E-value=0.89 Score=52.54 Aligned_cols=80 Identities=9% Similarity=0.090 Sum_probs=56.7
Q ss_pred CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeccccCceeeeCCCcccccceEec--CCcEEecccccHHH
Q 003040 240 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRD--QTGIEIGATVTISK 317 (854)
Q Consensus 240 ~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~--~~~l~IGA~vTl~~ 317 (854)
....++|+|.+|+.++++-... .+-...+.+||+++...........+||++++ +.|+.+ +..++|||++++.+
T Consensus 56 p~~vv~p~s~~dv~~~v~~a~~-~~~~~~vrggGh~~~g~~~~~~~gvvIdl~~l---~~i~~d~~~~~v~v~aG~~~~~ 131 (521)
T 2ipi_A 56 PDVVYVVHTADQVVDAVNQAMA-AGQRIAVRSGGHCFEGFVDDPAVRAVIDMSQM---RQVFYDSGKRAFAVEPGATLGE 131 (521)
T ss_dssp CSEEEECSSHHHHHHHHHHHHH-HTCCEEEESSCCCTTCGGGCTTCCEEEECTTC---CCEEEETTTTEEEECTTSBHHH
T ss_pred CCEEEEcCCHHHHHHHHHHHHH-cCCeEEEECCCcCCCCCcccCCCeEEEecccC---CCeEEeCCCCEEEEeCCcCHHH
Confidence 4567899999998887653210 13467888999987542211234689999874 555544 66899999999999
Q ss_pred HHHHHH
Q 003040 318 AIEALK 323 (854)
Q Consensus 318 l~~~l~ 323 (854)
|.+.+.
T Consensus 132 l~~~l~ 137 (521)
T 2ipi_A 132 TYRALY 137 (521)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 80
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A*
Probab=86.20 E-value=0.94 Score=52.06 Aligned_cols=81 Identities=11% Similarity=0.120 Sum_probs=56.7
Q ss_pred CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeecc-ccCceeeeCCCcccccceEecCCcEEecccccHHHH
Q 003040 240 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEV-EHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKA 318 (854)
Q Consensus 240 ~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~-~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l 318 (854)
...+++|+|.+|+.++++-... .+-...+.+||+++...... .....+||++++..+ .+. ++..+++||++++.+|
T Consensus 43 p~~vv~p~s~~dv~~~v~~a~~-~~~~~~v~ggGh~~~~~~~~~~~~gvvIdl~~l~~i-~~d-~~~~v~v~aG~~~~~l 119 (503)
T 1zr6_A 43 PAAIAIPRSTEDIAAAVQCGLD-AGVQISAKGGGHSYGSYGFGGEDGHLMLELDRMYRV-SVD-DNNVATIQGGARLGYT 119 (503)
T ss_dssp CSEEEECCSHHHHHHHHHHHHH-HTCCEEEESSCCCTTCTTTTSSSSCEEEECTTCCCE-EEC-TTSCEEEETTCBHHHH
T ss_pred CCEEEEeCCHHHHHHHHHHHHH-cCCeEEEECCCcCCCCCcccCCCCcEEEECccCCCE-EEC-CCCeEEEecCCCHHHH
Confidence 3467899999998887753210 13467889999998542221 233689999875444 333 4668999999999999
Q ss_pred HHHHH
Q 003040 319 IEALK 323 (854)
Q Consensus 319 ~~~l~ 323 (854)
.+.+.
T Consensus 120 ~~~l~ 124 (503)
T 1zr6_A 120 ALELL 124 (503)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88864
No 81
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa}
Probab=86.18 E-value=0.84 Score=52.70 Aligned_cols=83 Identities=10% Similarity=0.038 Sum_probs=57.5
Q ss_pred CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeec-cccCceeeeCCCcccccceEecCCcEEecccccHHHH
Q 003040 240 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKE-VEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKA 318 (854)
Q Consensus 240 ~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~-~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l 318 (854)
...+++|+|.+|+.++++-... .+-...+.+||+++..... ......+||++++..+ .|..++..+++||++++.+|
T Consensus 54 P~~vv~P~s~~dV~~~v~~a~~-~~~~v~vrggGh~~~g~~~~~~~~gvvIdl~~l~~i-~vd~~~~~v~V~aG~~l~~l 131 (518)
T 3vte_A 54 PLVIVTPSNNSHIQATILCSKK-VGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSI-KIDVHSQTAWVEAGATLGEV 131 (518)
T ss_dssp CSEEECCCSHHHHHHHHHHHHH-HTCEEEEESSCCCTTCTTTCCSSSEEEEECTTCCCE-EEETTTTEEEEETTCBHHHH
T ss_pred CCEEEEeCCHHHHHHHHHHHHH-cCCcEEEECCCcCCCCCccCCCCCeEEEECCCCcee-EEeCCCCEEEEeCCccHHHH
Confidence 4568999999999887763210 1346788899999743221 0234689999875443 23445678999999999999
Q ss_pred HHHHHH
Q 003040 319 IEALKE 324 (854)
Q Consensus 319 ~~~l~~ 324 (854)
.+.+.+
T Consensus 132 ~~~l~~ 137 (518)
T 3vte_A 132 YYWINE 137 (518)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887653
No 82
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A*
Probab=85.81 E-value=1 Score=51.83 Aligned_cols=82 Identities=13% Similarity=0.192 Sum_probs=56.9
Q ss_pred CceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccceEeeccccCceeeeCCCcccccceEecCCcEEecccccHHHHH
Q 003040 240 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAI 319 (854)
Q Consensus 240 ~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~ 319 (854)
....++|+|.+|+.++++-... .+-..++.+||+++.-.-.......+||++++..+ .|..++..++|||++++.+|.
T Consensus 35 P~~vv~P~s~~dV~~~v~~a~~-~~~~v~vrggGh~~~g~~~~~~~gvvIdl~~l~~i-~vd~~~~~v~v~aG~~~~~l~ 112 (501)
T 3pop_A 35 PEEFFLPATPDDVVASLQKAVT-EGRGVACRSGGHCGQDFVGTPRRDLVLDLHNLHAI-GPAADGAGVRVGSGATVDQVQ 112 (501)
T ss_dssp CSEEEECSSHHHHHHHHHHHHH-TTCCEEEESSCCCSSSTTTSSCCSEEEECTTCCCE-EECTTSSSEEEETTCBHHHHH
T ss_pred CCEEEEeCCHHHHHHHHHHHHH-cCCeEEEEeCCccCCCccccCCCEEEEEecccCCe-EEcCCCCEEEEECCcCHHHHH
Confidence 4568899999999887763211 24567888999988542111224689999875443 233345689999999999998
Q ss_pred HHHH
Q 003040 320 EALK 323 (854)
Q Consensus 320 ~~l~ 323 (854)
+.+.
T Consensus 113 ~~l~ 116 (501)
T 3pop_A 113 KALF 116 (501)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 83
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=83.66 E-value=2.6 Score=52.36 Aligned_cols=83 Identities=16% Similarity=0.177 Sum_probs=59.1
Q ss_pred eeEEEEEECCEEEEEecCCCCCcHHHHHhhccCCc----ccccC------CCCCCCCccEEEEeecCCCcccCCceeecc
Q 003040 11 RHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFK----SVKLG------CGEGGCGACVVLLSKYNPELDQLEDFTISS 80 (854)
Q Consensus 11 ~~~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~----g~k~g------C~~G~CGaCtV~v~~~~~~~~~~~~~~v~s 80 (854)
..+|+|++||+.++.. +..||+..|... |.. ++|.+ |+.|.|..|.|-+++.. .+......+.+
T Consensus 20 ~~~~~~~~dG~~~~~~---~g~tv~~aL~~~-Gv~~~~~s~~~~~prg~~~~~~~c~~~~v~v~~~~--~g~~~~~~~~a 93 (965)
T 2gag_A 20 EEALSLTVDGAKLSAF---RGDTVASALLAN-GVRRAGNSLYLDRPRGIFAAGVEEPNALVTVSARH--EQDIDESMLPA 93 (965)
T ss_dssp EEEEEEEETTEEEEEE---ETCBHHHHHHHT-TCCBCSCCTTTCCCCBCCCSSTTCCSCEEEECCCS--TTCCCEEEEEG
T ss_pred CCeEEEEECCEEEEec---CCCHHHHHHHHc-CCeEeecCCCCCCCcccccCCccCCceEEEEccCC--CCCcCCccccc
Confidence 3579999999999875 589999999654 432 22323 77799999999994100 11112356789
Q ss_pred cccchhhccCceeEEecCCCC
Q 003040 81 CLTLLCSVNGCLITTSEGLGN 101 (854)
Q Consensus 81 Cl~~~~~~~g~~i~TvEgl~~ 101 (854)
|.+++ .+|..|.|..|++.
T Consensus 94 c~~~~--~~gm~~~~~~glg~ 112 (965)
T 2gag_A 94 TTVPV--TEDLNATLLSGLGV 112 (965)
T ss_dssp GGCBC--CTTEEEEECSSCBC
T ss_pred eeeec--ccceEeecccCCCC
Confidence 98886 47999999988874
No 84
>3hrd_B Nicotinate dehydrogenase medium molybdopterin subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=83.32 E-value=0.97 Score=49.10 Aligned_cols=61 Identities=13% Similarity=0.058 Sum_probs=47.1
Q ss_pred CCCCeEEEEECCCCcEEEEeCCC----ChH-HHHHHHHHHhCCCCCCEEEEe------CCcCCCCCCCCCCc
Q 003040 786 METQTALAVPDEDNCLVVYSSIQ----CPE-SAHATIARCLGIPEHNVRVIT------RRVGGAFGGKAIKA 846 (854)
Q Consensus 786 mEp~~a~A~~~~dg~l~V~~stQ----~p~-~~~~~vA~~Lglp~~kV~V~~------~~~GGgFGgK~~~~ 846 (854)
..+.++....+.||.++|+++.+ ..+ .+.+.+|+.||+|.++|+|.. ++.+|.+|++.+..
T Consensus 21 ~~~~~a~v~i~~DG~V~v~~g~~emGQG~~T~laQIaAe~Lgi~~e~V~v~~~DT~~~p~~~~T~gSrst~~ 92 (330)
T 3hrd_B 21 PNPAAAFVEIHGDGSANVMFGAADIGQGSGTAMAQIAAEELGLDYEKIHVTWGDTMVTPDGGATSASRQTLI 92 (330)
T ss_dssp CCCEEEEEEECTTSCEEEEECCCCSSSCHHHHHHHHHHHHHTCCGGGEEEEESBTTTSCCCCCSCTTCHHHH
T ss_pred CCcceEEEEEeCCCeEEEEECCCCCCCCHHHHHHHHHHHHhCCCHHHEEEEecCCCCCCCCCCCcchHhHHh
Confidence 45677888888899999999864 444 345778999999999999985 45567788776544
No 85
>3nvz_C Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3ns1_C* 3etr_C* 3nvv_C* 3nvw_C* 3nrz_C* 3nvy_C* 3eub_C* 3b9j_C* 1fiq_C* 3rca_C* 3sr6_C*
Probab=71.46 E-value=1.4 Score=53.13 Aligned_cols=61 Identities=11% Similarity=0.086 Sum_probs=46.8
Q ss_pred CCCCeEEEEECCCCcEEEEeCCC----ChHH-HHHHHHHHhCCCCCCEEEEe------CCcCCCCCCCCCCc
Q 003040 786 METQTALAVPDEDNCLVVYSSIQ----CPES-AHATIARCLGIPEHNVRVIT------RRVGGAFGGKAIKA 846 (854)
Q Consensus 786 mEp~~a~A~~~~dg~l~V~~stQ----~p~~-~~~~vA~~Lglp~~kV~V~~------~~~GGgFGgK~~~~ 846 (854)
+.+.++.+....||.++|+++++ ..+. +.+.+|+.||||.++|+|.. +..+|.+|++.+..
T Consensus 444 ~~~~~a~v~l~~DG~v~v~~g~~e~GQG~~T~~aQiaAe~Lgi~~e~V~v~~~DT~~~p~~~~t~aSr~t~~ 515 (755)
T 3nvz_C 444 LNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQVASKALKIPISKIYISETSTNTVPNSSPTAASVSTDI 515 (755)
T ss_dssp GCEEEEEEEECTTSCEEEEESCCCSSSCHHHHHHHHHHHHHTSCGGGEECCCEETTTSCSCCCSCTTCHHHH
T ss_pred CCcceEEEEEecCCeEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHEEEECCCCCCCCCCCCCchhHHHHH
Confidence 45677888888899999999975 4443 45677899999999999964 34578888876543
No 86
>1rm6_A 4-hydroxybenzoyl-COA reductase alpha subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.41.1.1 d.133.1.1 PDB: 1sb3_A*
Probab=69.85 E-value=3.9 Score=49.45 Aligned_cols=60 Identities=18% Similarity=0.208 Sum_probs=46.8
Q ss_pred CCCCeEEEEECCCCcEEEEeCCCCh----H-HHHHHHHHHhCCCCCCEEEEe------CCcCCCCCCCCCC
Q 003040 786 METQTALAVPDEDNCLVVYSSIQCP----E-SAHATIARCLGIPEHNVRVIT------RRVGGAFGGKAIK 845 (854)
Q Consensus 786 mEp~~a~A~~~~dg~l~V~~stQ~p----~-~~~~~vA~~Lglp~~kV~V~~------~~~GGgFGgK~~~ 845 (854)
+...++.+..+.||.++|+++++.. + .+.+.+|+.||+|.++|+|.. +..+|.+|++.+.
T Consensus 457 ~~~~~a~v~l~~dG~v~v~~g~~e~GqG~~T~~aQiaAe~Lgip~e~V~v~~~DT~~~p~~~~t~aSr~t~ 527 (769)
T 1rm6_A 457 EPHATVNLKLDFDGGITLLTGAADIGQGSNTMASQVAAEVLGVRLSRIRVISADSALTPKDNGSYSSRVTF 527 (769)
T ss_dssp CCSEEEEEEECTTCCEEEEECCCCSSSCHHHHHHHHHHHHHTCCGGGEEEEESBTTTSCCCCCSCTTCHHH
T ss_pred CCCccEEEEEeCCCeEEEEECCccCCCCHHHHHHHHHHHHhCCCHHHEEEecCCCCCCCCCCCCccchHHH
Confidence 3567788888889999999988544 3 456788999999999999985 4556777776554
No 87
>1n62_B Carbon monoxide dehydrogenase large chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.41.1.1 d.133.1.1 PDB: 1n5w_B* 1n61_B* 1n60_B* 1n63_B* 1zxi_B*
Probab=69.66 E-value=6.9 Score=47.59 Aligned_cols=61 Identities=16% Similarity=0.213 Sum_probs=48.5
Q ss_pred CCeEEEEECCCCcEEEEeCCCCh----H-HHHHHHHHHhCCCCCCEEEEe------CCcCCCCCCCCCCcHH
Q 003040 788 TQTALAVPDEDNCLVVYSSIQCP----E-SAHATIARCLGIPEHNVRVIT------RRVGGAFGGKAIKAMP 848 (854)
Q Consensus 788 p~~a~A~~~~dg~l~V~~stQ~p----~-~~~~~vA~~Lglp~~kV~V~~------~~~GGgFGgK~~~~~~ 848 (854)
..++.+..+.||.++|+++++.. + .+.+.+|+.||||.++|+|.. +..+|.+|++.+...-
T Consensus 506 ~~~a~v~l~~DG~v~v~~g~~e~GqG~~T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~~t~aSr~t~~~G 577 (809)
T 1n62_B 506 FDSAEIRIHPTGSVIARMGTKSQGQGHETTYAQIIATELGIPADDIMIEEGNTDTAPYGLGTYGSRSTPTAG 577 (809)
T ss_dssp CEEEEEEECTTSCEEEEESCCCSSSCHHHHHHHHHHHHHTCCGGGEEEECCBTTTSCCCCCSCTTCTTTTHH
T ss_pred cccEEEEEecCCeEEEEECCCCCCCCHHHHHHHHHHHHhCCCHHHEEEecCCCCCCCCCCCcccchHHHHHH
Confidence 35678888889999999988544 3 355778999999999999985 4567889998886543
No 88
>2w3s_B Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 1jrp_B* 2w3r_B* 1jro_B* 2w54_B* 2w55_B*
Probab=66.37 E-value=3.7 Score=49.73 Aligned_cols=60 Identities=15% Similarity=0.102 Sum_probs=46.3
Q ss_pred CCCeEEEEECCCCcEEEEeCCCC----hH-HHHHHHHHHhCCCCCCEEEEe------CCcCCCCCCCCCCc
Q 003040 787 ETQTALAVPDEDNCLVVYSSIQC----PE-SAHATIARCLGIPEHNVRVIT------RRVGGAFGGKAIKA 846 (854)
Q Consensus 787 Ep~~a~A~~~~dg~l~V~~stQ~----p~-~~~~~vA~~Lglp~~kV~V~~------~~~GGgFGgK~~~~ 846 (854)
...++.+....||.++|+++++. .+ .+.+.+|+.||||.++|+|.. +..+|.+|++.+..
T Consensus 465 ~~~~a~v~l~~DG~v~v~~g~~e~GqG~~T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~~t~aSr~t~~ 535 (777)
T 2w3s_B 465 NQAGALVQIYTDGSVALNHGGTEMGQGLHAKMVQVAAAVLGIDPVQVRITATDTSKVPNTSATAASSGADM 535 (777)
T ss_dssp CEEEEEEEECTTSCEEEEESCCCSSSCHHHHHHHHHHHHHTSCGGGEEECCEETTTSCSCCCSCTTCHHHH
T ss_pred CCCceEEEEccCCeEEEEECCccCCCChhHHHHHHHHHHHCCCHHHEEEEcCCCCCCCCCCCCccchHHHH
Confidence 34677888888999999998754 33 355778899999999999974 55678888776543
No 89
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A*
Probab=64.74 E-value=10 Score=43.30 Aligned_cols=82 Identities=7% Similarity=0.136 Sum_probs=53.6
Q ss_pred ceEEecCCHHHHHHHHhhhcCCCCCcceEEccCccce-E-eecc-ccCceeeeCCCcccccceEecCCcEEecccccHHH
Q 003040 241 GSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMG-Y-YKEV-EHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISK 317 (854)
Q Consensus 241 ~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~l~-~-~k~~-~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~ 317 (854)
.-.++|+|.+|..++++-... .+-...+-+||++.. . .... .....+||++++... .|..+...++||+++++.+
T Consensus 54 ~~vv~p~~~~~v~~~v~~a~~-~~~~~~~r~gGh~~~g~s~~~~~~~~~~~idl~~~~~v-~~d~~~~~~~v~~G~~~~~ 131 (500)
T 3tsh_A 54 LYIITPTQVSHIQSAVVCGRR-HSVRIRVRSGGHDYEGLSYRSLQPETFAVVDLNKMRAV-WVDGKARTAWVDSGAQLGE 131 (500)
T ss_dssp SEEECCSSHHHHHHHHHHHHH-TTCEEEEESSCCCTTCTTTCCSSSCCEEEEECTTCCCE-EEETTTTEEEEETTSBHHH
T ss_pred eEEEEcCCHHHHHHHHHHHHH-CCCcEEEEcCCcCCCCCcCCCCCcCCeEEEECcCCCCE-EECCCCCEEEEccCcCHHH
Confidence 357889999988877652210 123456668888752 2 1111 234578999886543 3444567899999999999
Q ss_pred HHHHHHH
Q 003040 318 AIEALKE 324 (854)
Q Consensus 318 l~~~l~~ 324 (854)
+.+.+.+
T Consensus 132 ~~~~l~~ 138 (500)
T 3tsh_A 132 LYYAIYK 138 (500)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887653
No 90
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Probab=63.36 E-value=9.3 Score=47.05 Aligned_cols=63 Identities=19% Similarity=0.243 Sum_probs=49.8
Q ss_pred CCCCeEEEEECCCCcEEEEeCCCCh----H-HHHHHHHHHh---CCCCCCEEEEe------CCcCCCCCCCCCCcHH
Q 003040 786 METQTALAVPDEDNCLVVYSSIQCP----E-SAHATIARCL---GIPEHNVRVIT------RRVGGAFGGKAIKAMP 848 (854)
Q Consensus 786 mEp~~a~A~~~~dg~l~V~~stQ~p----~-~~~~~vA~~L---glp~~kV~V~~------~~~GGgFGgK~~~~~~ 848 (854)
+....+.+..+.||.++|+++++.. + .+.+.+|+.| |+|.++|+|.. +..+|.+|++.+...-
T Consensus 631 ~~~~~a~v~l~~DG~v~v~~g~~e~GqG~~T~~aQiaAe~L~~~Gip~~~V~v~~~DT~~~p~~~~t~gSr~t~~~G 707 (907)
T 1dgj_A 631 PDTSEAWVELNDDGSVTLGNSWEDHGQGADAGSLGTAHEALRPLGITPENIHLVMNDTSKTPNSGPAGGSRSQVVTG 707 (907)
T ss_dssp SCEEEEEEEECTTSCEEEEECCCCSSSCHHHHHHHHHHHHTGGGTCCGGGEEEEESBTTTSCCCCCSCTTCTTTHHH
T ss_pred CCCccEEEEEeCCCeEEEEECCcCCCccHHHHHHHHHHHHHhhcCCCHHHEEEecCCCCCCCCCCCCccchHHHHHH
Confidence 3567788888889999999988544 3 3567888999 99999999985 4567888888876543
No 91
>1ffv_B CUTL, molybdoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.41.1.1 d.133.1.1 PDB: 1ffu_B*
Probab=62.91 E-value=6.3 Score=47.88 Aligned_cols=59 Identities=15% Similarity=0.165 Sum_probs=45.8
Q ss_pred CCeEEEEECCCCcEEEEeCCCCh----H-HHHHHHHHHhCCCCCCEEEEe------CCcCCCCCCCCCCc
Q 003040 788 TQTALAVPDEDNCLVVYSSIQCP----E-SAHATIARCLGIPEHNVRVIT------RRVGGAFGGKAIKA 846 (854)
Q Consensus 788 p~~a~A~~~~dg~l~V~~stQ~p----~-~~~~~vA~~Lglp~~kV~V~~------~~~GGgFGgK~~~~ 846 (854)
..++.+..+.||.++|+++++.. + .+.+.+|+.||+|.++|+|.. +..+|.+|++.+..
T Consensus 500 ~~~a~v~l~~dG~v~v~~g~~e~GqG~~T~~aQiaAe~LGi~~e~V~v~~~DT~~~p~~~~t~aSr~t~~ 569 (803)
T 1ffv_B 500 FDSCEIRIHPTGSAIARMGTITQGQGHQTTYAQIIATELGIPSEVIQVEEGDTSTAPYGLGTYGSRSTPV 569 (803)
T ss_dssp CEEEEEEECTTSCEEEEESCCCSSSCHHHHHHHHHHHHHTCCGGGEEEECCBTTTSCCCCCSCTTCHHHH
T ss_pred cccEEEEEecCCeEEEEECCcCCCCCHHHHHHHHHHHHHCCCHHHEEEecCCCCCCCCCCCcccchHHHH
Confidence 36678888889999999988544 3 456788999999999999986 45567777776543
No 92
>1t3q_B Quinoline 2-oxidoreductase large subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.41.1.1 d.133.1.1
Probab=61.71 E-value=6.7 Score=47.55 Aligned_cols=58 Identities=21% Similarity=0.265 Sum_probs=44.5
Q ss_pred CCeEEEEECCCCcEEEEeCCCCh----H-HHHHHHHHHhCCCCCCEEEEe-----CCcCCCCCCCCCC
Q 003040 788 TQTALAVPDEDNCLVVYSSIQCP----E-SAHATIARCLGIPEHNVRVIT-----RRVGGAFGGKAIK 845 (854)
Q Consensus 788 p~~a~A~~~~dg~l~V~~stQ~p----~-~~~~~vA~~Lglp~~kV~V~~-----~~~GGgFGgK~~~ 845 (854)
..++.+..+.||.++|+++++.. + .+.+.+|+.||+|.++|+|.. +..+|.+|++.+.
T Consensus 484 ~~~a~v~l~~dG~v~v~~g~~e~GqG~~T~~aQiaAe~LGip~~~V~v~~~DT~~p~~~~t~aSr~t~ 551 (788)
T 1t3q_B 484 HDSATVRIDPTGKVTVTTSLASSGQGHETTLAQIAADVLGVPASDVVIQAGSTKNTYGFGAYASRGAV 551 (788)
T ss_dssp CBEEEEEECTTSCEEEEESCCCSSSCHHHHHHHHHHHHHTSCGGGEEEECSBTTSCCBCCSCTTCHHH
T ss_pred cccEEEEEecCCeEEEEECCcCCCCCHHHHHHHHHHHHHCCCHHHEEEecCCCCCCCCCCCccchHHH
Confidence 36678888889999999988543 3 356788999999999999996 4456666666543
No 93
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A*
Probab=53.23 E-value=5.7 Score=50.91 Aligned_cols=61 Identities=11% Similarity=0.086 Sum_probs=46.6
Q ss_pred CCCCeEEEEECCCCcEEEEeCCC----ChHH-HHHHHHHHhCCCCCCEEEEe------CCcCCCCCCCCCCc
Q 003040 786 METQTALAVPDEDNCLVVYSSIQ----CPES-AHATIARCLGIPEHNVRVIT------RRVGGAFGGKAIKA 846 (854)
Q Consensus 786 mEp~~a~A~~~~dg~l~V~~stQ----~p~~-~~~~vA~~Lglp~~kV~V~~------~~~GGgFGgK~~~~ 846 (854)
+.+.++.+....||.++|+++++ ..+. +.+.+|+.||+|.++|+|.. +..+|.+|++.+..
T Consensus 1014 ~~~~~a~v~l~~DGsv~v~~g~~e~GQG~~T~~aQiaAe~LGip~e~V~v~~~DT~~~P~~~~t~aSr~t~~ 1085 (1332)
T 3unc_A 1014 LNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQVASKALKIPISKIYISETSTNTVPNSSPTAASVSTDI 1085 (1332)
T ss_dssp GCEEEEEEEECTTSCEEEEESCCCSSSCHHHHHHHHHHHHHTSCGGGEECCCEETTTSCSCCCSCTTCHHHH
T ss_pred CCcceEEEEEcCCCeEEEEECCcCCCCCHHHHHHHHHHHHhCCCHHHEEEEcCCCCCCCCCCCccHHHHHHH
Confidence 46677888888899999999974 4444 44667889999999999974 34577888776543
No 94
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=52.67 E-value=14 Score=31.84 Aligned_cols=32 Identities=13% Similarity=0.235 Sum_probs=21.4
Q ss_pred ceeEEEEEECCEEEEEecCCCC-CcHHHHHhhccCCc
Q 003040 10 TRHSVVFAVNGEKFEVSSVDPS-TTLLEFLRYHTRFK 45 (854)
Q Consensus 10 ~~~~i~f~~Ng~~~~~~~~~p~-~~Ll~~LR~~~~l~ 45 (854)
...+++++|||+.+++. .. .||.++|+. +++.
T Consensus 17 ~~~~M~I~vNGe~~el~---~~~~Tv~dLL~~-L~~~ 49 (87)
T 1tyg_B 17 IGGRHMLQLNGKDVKWK---KDTGTIQDLLAS-YQLE 49 (87)
T ss_dssp -----CEEETTEEECCS---SSCCBHHHHHHH-TTCT
T ss_pred CCcceEEEECCEEEECC---CCCCcHHHHHHH-hCCC
Confidence 34567899999998864 34 899999975 5654
No 95
>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus}
Probab=51.91 E-value=6.6 Score=50.43 Aligned_cols=60 Identities=13% Similarity=0.023 Sum_probs=45.9
Q ss_pred CCCCCeEEEEECCCCcEEEEeCCCCh-----HHHHHHHHHHhCCCCCCEEEE------eCCcCCCCCCCCC
Q 003040 785 YMETQTALAVPDEDNCLVVYSSIQCP-----ESAHATIARCLGIPEHNVRVI------TRRVGGAFGGKAI 844 (854)
Q Consensus 785 ~mEp~~a~A~~~~dg~l~V~~stQ~p-----~~~~~~vA~~Lglp~~kV~V~------~~~~GGgFGgK~~ 844 (854)
.....++.+....||.++|+.+++.. ..+.+.+|+.||+|.++|+|. ++..+|.+|++.+
T Consensus 1018 ~~~~~~a~v~i~~DGsv~v~~G~~e~GQG~~T~~aQiaAe~LGip~e~I~v~~~DT~~~P~~~gt~gSr~t 1088 (1335)
T 3zyv_A 1018 FYYQAAALVQIYTDGSVLVAHGGVELGQGINTKMIQVASRELKIPMSYIHLDEMSTVTVPNTVTTGASTGA 1088 (1335)
T ss_dssp GGGCEEEEEEECTTSCEEECBSCCCSSSCHHHHHHHHHHHHHTSCGGGEEECCEETTTSCSCCCSCTTCHH
T ss_pred cccceeEEEEEeCCCcEEEEECCcCCCCchhHHHHHHHHHHhCCCHHHEEEecCCcCCCCCCCCCcccHHH
Confidence 34556788888889999999988654 235577889999999999996 3556677777654
No 96
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=50.42 E-value=31 Score=28.54 Aligned_cols=62 Identities=19% Similarity=0.130 Sum_probs=39.3
Q ss_pred EEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhc-cCcee
Q 003040 15 VFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSV-NGCLI 93 (854)
Q Consensus 15 ~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~-~g~~i 93 (854)
+++|||+.+++ ..+||.++|.+ +++.. -.|.|.+ |+.-|..--..-..+ +|-.|
T Consensus 2 ~I~vNG~~~e~----~~~Tl~~LL~~-l~~~~----------~~vAV~v----------Ng~iVpr~~~~~~~L~dGD~v 56 (73)
T 2kl0_A 2 LVTINGEQREV----QSASVAALMTE-LDCTG----------GHFAVAL----------NYDVVPRGKWDETPVTAGDEI 56 (73)
T ss_dssp CEEETTEEECC----CCSBHHHHHHH-TTCCS----------SSCEEEE----------SSSEECHHHHTTCBCCTTCEE
T ss_pred EEEECCEEEEc----CCCcHHHHHHH-cCCCC----------CcEEEEE----------CCEECChHHcCcccCCCCCEE
Confidence 57999998876 36999999984 57652 2346777 455554443322223 56777
Q ss_pred EEecCCCC
Q 003040 94 TTSEGLGN 101 (854)
Q Consensus 94 ~TvEgl~~ 101 (854)
--+--++.
T Consensus 57 eIv~~VgG 64 (73)
T 2kl0_A 57 EILTPRQG 64 (73)
T ss_dssp EEECCCCC
T ss_pred EEEccccC
Confidence 76666653
No 97
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Probab=49.99 E-value=10 Score=46.77 Aligned_cols=61 Identities=15% Similarity=0.192 Sum_probs=47.0
Q ss_pred CCCCeEEEEECCCCcEEEEeCCCCh----H-HHHHHHHHHh---CCCCCCEEEEe------CCcCCCCCCCCCCc
Q 003040 786 METQTALAVPDEDNCLVVYSSIQCP----E-SAHATIARCL---GIPEHNVRVIT------RRVGGAFGGKAIKA 846 (854)
Q Consensus 786 mEp~~a~A~~~~dg~l~V~~stQ~p----~-~~~~~vA~~L---glp~~kV~V~~------~~~GGgFGgK~~~~ 846 (854)
+...++.+..+.||.++|+++++.. + .+.+.+|+.| |+|.++|+|.. +..+|.+|++.+..
T Consensus 629 ~~~~~a~v~l~~DG~v~v~~g~~e~GqG~~T~~aQiaAe~L~~~Gip~~~V~v~~~DT~~~p~~~~t~gSr~t~~ 703 (907)
T 1vlb_A 629 PDASEAWAELNADGTITVHTAWEDHGQGADIGCVGTAHEALRPMGVAPEKIKFTWPNTATTPNSGPSGGSRQQVM 703 (907)
T ss_dssp TCEEEEEEEECTTSCEEEECCCCCSSSCHHHHHHHHHHHHHGGGTCCGGGEEECCCBTTTSCCCCCSCTTCHHHH
T ss_pred CCCccEEEEEeCCCeEEEEECCccCCCCHHHHHHHHHHHHHhhcCCCHHHEEEecCCCCCCCCCCCCccchHHHH
Confidence 3556788888889999999988544 3 3557788999 99999999985 45567777775543
No 98
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=49.43 E-value=11 Score=31.49 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=26.0
Q ss_pred eEEEEEECCEEEEEecCCCCCcHHHHHhhccCCcc
Q 003040 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKS 46 (854)
Q Consensus 12 ~~i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g 46 (854)
|+|++.|||+.....+++++.|+.|+|+. ++|..
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~-Lgl~~ 34 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVRA-VDLSP 34 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHHT-TCCCS
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHHH-cCCCc
Confidence 68999999986332347789999999984 67763
No 99
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=41.62 E-value=16 Score=32.77 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=27.0
Q ss_pred CCCCceeEEEE-EECCEEEEEecCCCCCcHHHHH
Q 003040 6 QHGGTRHSVVF-AVNGEKFEVSSVDPSTTLLEFL 38 (854)
Q Consensus 6 ~~~~~~~~i~f-~~Ng~~~~~~~~~p~~~Ll~~L 38 (854)
+.+|..|.|++ +++|+.++++ |+|+.|+.++=
T Consensus 2 ~~~~~~M~I~Vk~l~g~~~~v~-V~~~~TV~dLK 34 (105)
T 1v2y_A 2 SSGSSGMTVRVCKMDGEVMPVV-VVQNATVLDLK 34 (105)
T ss_dssp CCCCCSEEEEEECSSSCEEEEE-ECTTCBHHHHH
T ss_pred CCCCCcEEEEEEecCCCEEEEE-ECCCChHHHHH
Confidence 45777899988 6899999997 89999988754
No 100
>3kwl_A Uncharacterized protein; putative oxidoreductase, multidomain, unknown function; 1.94A {Helicobacter pylori}
Probab=38.95 E-value=30 Score=39.67 Aligned_cols=59 Identities=10% Similarity=0.148 Sum_probs=43.3
Q ss_pred EEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhcc---CceeEEec
Q 003040 21 EKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVN---GCLITTSE 97 (854)
Q Consensus 21 ~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~---g~~i~TvE 97 (854)
+.++|+ +++++|+||.|..- . -..|.+ +|.+.| ||++..+ .+++..+. | ..+|||
T Consensus 43 ~~y~v~-~~~~~~vLd~L~~i-k----~l~fr~----sCam~I----------NG~~~la-~t~~~~~~~~~~-~~i~ie 100 (514)
T 3kwl_A 43 ESYFLE-YQEDQYLLDLLKQL-K----GVSYSE----NIALKI----------NQIAVFE-DAKVSDLVAFFS-KEWVLD 100 (514)
T ss_dssp EEEEEE-CCTTCBHHHHHTTS-T----TCCCCS----SCCEEE----------TTEEECS-CCBHHHHHHHHC-SEEEEE
T ss_pred EEEEEe-CCCCCcHHHHHHHh-h----hCeeec----cceEEE----------CCEehhh-hhhHHHHhhccC-CcEEEE
Confidence 466775 78999999999753 2 444776 899999 8999999 55554431 3 367899
Q ss_pred CCCC
Q 003040 98 GLGN 101 (854)
Q Consensus 98 gl~~ 101 (854)
-|.+
T Consensus 101 Pl~~ 104 (514)
T 3kwl_A 101 PLSK 104 (514)
T ss_dssp CSCS
T ss_pred ECCC
Confidence 9975
No 101
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=38.73 E-value=16 Score=32.61 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=31.9
Q ss_pred EEEEEE-CCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEe
Q 003040 13 SVVFAV-NGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLS 64 (854)
Q Consensus 13 ~i~f~~-Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~ 64 (854)
.|+.+| |+++..|+ |.|++||-|.|-.-+.+.+. .|--|.|-..
T Consensus 20 ~ir~hLPNqQrT~V~-VrpG~tlrdaL~KaLk~R~L-------~pe~C~Vy~~ 64 (107)
T 1rrb_A 20 TIRVFLPNKQRTVVN-VRNGMSLHDCLMKALKVRGL-------QPECCAVFRL 64 (107)
T ss_dssp EEEEECTTTCCEEEE-CCTTCBHHHHHHHHHHHHTC-------CTTTEEEEEC
T ss_pred eEEEECCCCCeEEEE-ecCCcCHHHHHHHHHHHcCC-------CHHHceeEEc
Confidence 577777 77788886 99999999999655544443 2556888754
No 102
>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=37.18 E-value=16 Score=25.59 Aligned_cols=28 Identities=21% Similarity=0.507 Sum_probs=25.3
Q ss_pred HhHHHHhcCCCCCCCCChHHHHHHHHHH
Q 003040 109 IHQRFAGFHASQCGFCTPGMCMSLFSAL 136 (854)
Q Consensus 109 iq~a~~~~~~~qCG~CtPG~vm~~~~ll 136 (854)
..|+|+.+.-+-||||.--.-|...++-
T Consensus 5 ceqamascehtmcgycqgplymtcigit 32 (40)
T 1erd_A 5 CEQAMASCEHTMCGYCQGPLYMTCIGIT 32 (40)
T ss_dssp HHHHHHHTCGGGGGGSCHHHHHHHHHHH
T ss_pred HHHHHHhccccccccccCCeeEEEEeec
Confidence 5789999999999999999999988876
No 103
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=34.23 E-value=21 Score=30.06 Aligned_cols=66 Identities=18% Similarity=0.119 Sum_probs=39.6
Q ss_pred EEEEECCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeecCCCcccCCceeecccccchhhc-cCce
Q 003040 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSV-NGCL 92 (854)
Q Consensus 14 i~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~-~g~~ 92 (854)
++++|||+.+++. ....+||.++|.+ +++.. -..|.|.+ |+.-|..--..-..+ +|-.
T Consensus 1 M~I~vNGe~~e~~-~~~~~Tl~~LL~~-l~~~~---------~~~vAVav----------Ng~iVpr~~~~~~~L~dGD~ 59 (78)
T 2k5p_A 1 MNLTVNGKPSTVD-GAESLNVTELLSA-LKVAQ---------AEYVTVEL----------NGEVLEREAFDATTVKDGDA 59 (78)
T ss_dssp CEEEETTEEEECS-SCSCEEHHHHHHH-HTCSC---------TTTCCEEE----------TTEECCTTHHHHCEECSSBC
T ss_pred CEEEECCEEEEcC-CCCCCcHHHHHHH-cCCCC---------CCcEEEEE----------CCEECChHHcCcccCCCCCE
Confidence 3689999998864 1146999999985 57651 11245766 455554443322223 5666
Q ss_pred eEEecCCC
Q 003040 93 ITTSEGLG 100 (854)
Q Consensus 93 i~TvEgl~ 100 (854)
|.-+--++
T Consensus 60 IEIv~~Vg 67 (78)
T 2k5p_A 60 VEFLYFMG 67 (78)
T ss_dssp EEECCCCC
T ss_pred EEEEeeec
Confidence 66655554
No 104
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=31.17 E-value=17 Score=37.22 Aligned_cols=16 Identities=44% Similarity=0.947 Sum_probs=14.4
Q ss_pred ccCCCCCCCCccEEEE
Q 003040 48 KLGCGEGGCGACVVLL 63 (854)
Q Consensus 48 k~gC~~G~CGaCtV~v 63 (854)
+..|+.|.||+|+|-.
T Consensus 223 ~m~CG~G~C~~C~~~~ 238 (262)
T 1ep3_B 223 RMACGIGACYACVEHD 238 (262)
T ss_dssp CCSSSSSSSCTTEEEE
T ss_pred cccCcccccccCCccc
Confidence 4789999999999976
No 105
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=28.42 E-value=23 Score=27.66 Aligned_cols=30 Identities=40% Similarity=0.460 Sum_probs=23.6
Q ss_pred HHHHHHHHhCCCCCCEEEEeCCcCC---CCCCC
Q 003040 813 AHATIARCLGIPEHNVRVITRRVGG---AFGGK 842 (854)
Q Consensus 813 ~~~~vA~~Lglp~~kV~V~~~~~GG---gFGgK 842 (854)
+-..+++.||+|++.|.|....+-. ||||+
T Consensus 24 lt~~l~~~lg~~~~~v~V~i~e~~~~~w~~gG~ 56 (64)
T 3abf_A 24 LTEMASRLLGEPYEEVRVILYEVRRDQWAAGGV 56 (64)
T ss_dssp HHHHHHHHTTCCGGGEEEEEEEECGGGEEETTE
T ss_pred HHHHHHHHhCCCcccEEEEEEEcCHHHeeECCE
Confidence 3456788999999999998876664 67765
No 106
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=26.59 E-value=24 Score=28.34 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=20.8
Q ss_pred EEEECCEEEEEecCCCCCcHHHHHhhccCCc
Q 003040 15 VFAVNGEKFEVSSVDPSTTLLEFLRYHTRFK 45 (854)
Q Consensus 15 ~f~~Ng~~~~~~~~~p~~~Ll~~LR~~~~l~ 45 (854)
+++|||+.+++. ...|+.++|+. +++.
T Consensus 2 ~i~vNg~~~~~~---~~~tv~~ll~~-l~~~ 28 (66)
T 1f0z_A 2 QILFNDQAMQCA---AGQTVHELLEQ-LDQR 28 (66)
T ss_dssp CEEESSCEECCC---TTCCHHHHHHH-HTCC
T ss_pred EEEECCEEEEcC---CCCcHHHHHHH-cCCC
Confidence 589999998764 46899999975 4553
No 107
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=22.00 E-value=55 Score=28.23 Aligned_cols=35 Identities=14% Similarity=0.217 Sum_probs=24.8
Q ss_pred CCCCCceeEEEEE-ECCEEEEEecCCCCCcHHHHHhh
Q 003040 5 QQHGGTRHSVVFA-VNGEKFEVSSVDPSTTLLEFLRY 40 (854)
Q Consensus 5 ~~~~~~~~~i~f~-~Ng~~~~~~~~~p~~~Ll~~LR~ 40 (854)
-++.+..|.|.+. +||+.+.++ ++++.|+.++-..
T Consensus 16 ~~~~~~~m~I~Vk~~~g~~~~l~-v~~~~TV~~LK~~ 51 (98)
T 4hcn_B 16 LYFQGRPMQIFVKTLTGKTITLE-VESSDTIDNVKSK 51 (98)
T ss_dssp ------CCEEEEEETTCCEEEEE-CCTTCBHHHHHHH
T ss_pred CCCCCCeEEEEEEeCCCCEEEEE-ECCCCcHHHHHHH
Confidence 4567788999888 699999997 8999999987654
No 108
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=21.23 E-value=69 Score=27.16 Aligned_cols=39 Identities=15% Similarity=0.455 Sum_probs=28.6
Q ss_pred CCceeEEEEEECCEEEEE-ecCCCCCcHHHHHhhccCCccc
Q 003040 8 GGTRHSVVFAVNGEKFEV-SSVDPSTTLLEFLRYHTRFKSV 47 (854)
Q Consensus 8 ~~~~~~i~f~~Ng~~~~~-~~~~p~~~Ll~~LR~~~~l~g~ 47 (854)
+...|.|++..+|+.+.+ + ++++.|+.++-..-...+|+
T Consensus 4 ~~~~m~i~Vk~~g~~~~i~~-v~~~~TV~~lK~~I~~~~gi 43 (90)
T 1v5t_A 4 GSSGLPIIVKWGGQEYSVTT-LSEDDTVLDLKQFLKTLTGV 43 (90)
T ss_dssp CCCSCCEEEEETTEEEEECS-CCSSSBHHHHHHHHHHHTCC
T ss_pred CCceEEEEEEECCEEEEEEE-eCCCCCHHHHHHHHHHHHCc
Confidence 334577888889999999 6 89999998877543334443
No 109
>3r07_C Putative lipoate-protein ligase A subunit 2; adenylate-forming enzyme, BI-partite, ATP-binding, transferase; 2.70A {Thermoplasma acidophilum dsm 1728}
Probab=20.20 E-value=2.5e+02 Score=24.02 Aligned_cols=42 Identities=19% Similarity=0.323 Sum_probs=29.8
Q ss_pred CceeeeeEEEEcccCCCcc-eeHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003040 470 GIRVNNCRLAFGAFGTKHA-IRARRVEEFLTGKVLNFGVLYEAIKLL 515 (854)
Q Consensus 470 ~~~i~~~ria~Ggv~~~~p-~ra~~~E~~L~Gk~l~~~~l~~a~~~l 515 (854)
+|+|++++|.=--.. . | --..+.|+.|+|.+.+ .+.++++.+
T Consensus 27 ~G~I~~vki~GDFf~-~-p~~~i~~le~~L~G~~~~--~i~~~l~~~ 69 (91)
T 3r07_C 27 GNRIKDIHISGDFFM-F-PEDSINRLEDMLRGSSIE--KINDIIRDF 69 (91)
T ss_dssp TTEEEEEEEEEEBCC-B-STTHHHHHHHHHTTSBTT--SHHHHHHHH
T ss_pred CCEEEEEEEEcccCC-C-cchhHHHHHHHHCCCCHH--HHHHHHHhh
Confidence 479999998633332 2 3 4478999999999998 566665554
No 110
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=20.14 E-value=1.4e+02 Score=25.18 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=32.2
Q ss_pred EEEEEE-CCEEEEEecCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEe
Q 003040 13 SVVFAV-NGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLS 64 (854)
Q Consensus 13 ~i~f~~-Ng~~~~~~~~~p~~~Ll~~LR~~~~l~g~k~gC~~G~CGaCtV~v~ 64 (854)
.|+.+| |+++..|+ |.|++||-|.|-.-+.+.+. .+-.|.|--.
T Consensus 3 ~irvhLPn~QrT~V~-VrpG~tlrdaL~KaLk~R~L-------~pe~C~V~~~ 47 (77)
T 1c1y_B 3 TIRVFLPNKQRTVVN-VRNGMSLHDCLMKALKVRGL-------QPECCAVFRL 47 (77)
T ss_dssp EEEEEETTTEEEEEE-CCTTCBHHHHHHHHHHTTTC-------CGGGEEEEEE
T ss_pred eEEEECCCCceEEEE-ecCCcCHHHHHHHHHHHcCC-------CHHHeEEEEe
Confidence 456666 78888886 89999999999766555555 3556888754
Done!