BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003041
(854 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G85|A Chain A, Crystal Structure Of Human Hisrs
pdb|4G85|B Chain B, Crystal Structure Of Human Hisrs
Length = 517
Score = 476 bits (1225), Expect = e-134, Method: Compositional matrix adjust.
Identities = 255/474 (53%), Positives = 337/474 (71%), Gaps = 41/474 (8%)
Query: 415 LTKIREIVESNESRR--LPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVF 472
L K++ + +ES++ + K PKGTRD++ QMAVREK F +I FKRHGA +DTPVF
Sbjct: 49 LLKLKAQLGPDESKQKFVLKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVF 108
Query: 473 EMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGLTSFKRHQIAKVYR 532
E++ETLMGKYGEDSKLIYDL DQGGEL SLRYDLTVPFARY+AMN LT+ KR+ IAKVYR
Sbjct: 109 ELKETLMGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFARYLAMNKLTNIKRYHIAKVYR 168
Query: 533 RDNP--SKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIGDYEIKLNHRLLL 590
RDNP ++GRYREFYQCDFDIAG ++ M PD E +KI+ E+L+ L IGD+ +K+N R +L
Sbjct: 169 RDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQIGDFLVKVNDRRIL 228
Query: 591 DGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSP 650
DGM ICGV KFRTICSS+DKLDK S+E++K EMV EKGL+ E ADRIG +V++ G
Sbjct: 229 DGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGG- 287
Query: 651 LVLLSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYT--- 707
+ L+ +L Q+ L +N A L DL++LF+ L DK+ FDLSLARGLDYYT
Sbjct: 288 VSLVEQLLQDPKLS-QNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVI 346
Query: 708 -----------------GVGSIAAGGRYDNLIGMFGTK--QVPAVGVSLGIERVFTIMEQ 748
GVGS+AAGGRYD L+GMF K +VP VG+S+G+ER+F+I+EQ
Sbjct: 347 YEAVLLQTPAQAGEEPLGVGSVAAGGRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQ 406
Query: 749 IQKERNQIIRATETQVLVG-----LLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLID 803
+ + IR TETQVLV LL ++L +LVSELW+A +KAE +++KK KL++
Sbjct: 407 RLEALEEKIRTTETQVLVASAQKKLLEERL----KLVSELWDAGIKAE-LLYKKNPKLLN 461
Query: 804 R---ARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 854
+ E+ IP + I+GE+EL +G++KL+++ + +E + R + VEEI+RR Q
Sbjct: 462 QLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRRTGQ 515
>pdb|4G84|A Chain A, Crystal Structure Of Human Hisrs
pdb|4G84|B Chain B, Crystal Structure Of Human Hisrs
Length = 464
Score = 475 bits (1222), Expect = e-134, Method: Compositional matrix adjust.
Identities = 251/455 (55%), Positives = 326/455 (71%), Gaps = 39/455 (8%)
Query: 432 KLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYD 491
K PKGTRD++ QMAVREK F +I FKRHGA +DTPVFE++ETLMGKYGEDSKLIYD
Sbjct: 15 KTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYD 74
Query: 492 LADQGGELCSLRYDLTVPFARYVAMNGLTSFKRHQIAKVYRRDNP--SKGRYREFYQCDF 549
L DQGGEL SLRYDLTVPFARY+AMN LT+ KR+ IAKVYRRDNP ++GRYREFYQCDF
Sbjct: 75 LKDQGGELLSLRYDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDF 134
Query: 550 DIAGQYERMGPDFEVVKILTELLNELDIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICS 609
DIAG ++ M PD E +KI+ E+L+ L IGD+ +K+N R +LDGM ICGV KFRTICS
Sbjct: 135 DIAGNFDPMIPDAECLKIMCEILSSLQIGDFLVKVNDRRILDGMFAICGVSDSKFRTICS 194
Query: 610 SIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLENSS 669
S+DKLDK S+E++K EMV EKGL+ E ADRIG +V++ G + L+ +L Q+ L +N
Sbjct: 195 SVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGG-VSLVEQLLQDPKLS-QNKQ 252
Query: 670 AKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYT--------------------GV 709
A L DL++LF+ L DK+ FDLSLARGLDYYT GV
Sbjct: 253 ALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGV 312
Query: 710 GSIAAGGRYDNLIGMFGTK--QVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVG 767
GS+AAGGRYD L+GMF K +VP VG+S+G+ER+F+I+EQ + + IR TETQVLV
Sbjct: 313 GSVAAGGRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQRLEALEEKIRTTETQVLVA 372
Query: 768 -----LLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDR---ARESKIPWMVIVGER 819
LL ++L +LVSELW+A +KAE +++KK KL+++ E+ IP + I+GE+
Sbjct: 373 SAQKKLLEERL----KLVSELWDAGIKAE-LLYKKNPKLLNQLQYCEEAGIPLVAIIGEQ 427
Query: 820 ELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 854
EL +G++KL+++ + +E + R + VEEI+RR Q
Sbjct: 428 ELKDGVIKLRSVTSREEVDVRREDLVEEIKRRTGQ 462
>pdb|3NET|A Chain A, Crystal Structure Of Histidyl-Trna Synthetase From Nostoc
Sp. Pcc 7120
pdb|3NET|B Chain B, Crystal Structure Of Histidyl-Trna Synthetase From Nostoc
Sp. Pcc 7120
Length = 465
Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 132/454 (29%), Positives = 226/454 (49%), Gaps = 39/454 (8%)
Query: 434 PKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDL- 492
P G +F + + I V++ +G ++TP E E L K + +IY L
Sbjct: 15 PSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLE 74
Query: 493 --------------ADQGGELCSLRYDLTVPFARYVA--MNGLT-SFKRHQIAKVYRRDN 535
D G E +L++D TVP A Y+A +N LT F R+Q V+R +
Sbjct: 75 PILPPNRQAEKDKSGDTGSEARALKFDQTVPLAAYIARHLNDLTFPFARYQXDVVFRGER 134
Query: 536 PSKGRYREFYQCDFDIAGQYERMG--PDFEVVKILTELLNELDIGDYEIKLNHRLLLDGM 593
GR+R+F QCD D+ G+ E++ D + I+TE+ ++IGD+ I++N+R +L G
Sbjct: 135 AKDGRFRQFRQCDIDVVGR-EKLSLLYDAQXPAIITEIFEAVNIGDFVIRINNRKVLTGF 193
Query: 594 LEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVL 653
+ + + ++ S ID L+K ++K E+ E++G++ E +I FVK GS +
Sbjct: 194 FQSLNISETQIKSCISIIDNLEKIGEAKVKLEL-EKEGINPEQTQKIIDFVKIDGSVDDV 252
Query: 654 LSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDK-VVFDLSLARGLDYYTG---- 708
L KL+ E+ L + +LE + + DK DL++ARGL+YYTG
Sbjct: 253 LDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYTGTVYE 312
Query: 709 --------VGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRAT 760
+GSI +GGRY+ L+G F ++ P VG+S+G+ R+ + + ++ + T
Sbjct: 313 TTLIGHEALGSICSGGRYEELVGTFIGEKXPGVGISIGLTRLISRL--LKAGILNTLPPT 370
Query: 761 ETQVLVGLLGDKL-PLAAELVSELWNAKVKAEYMVHKKVM-KLIDRARESKIPWMVIVGE 818
QV+V D+L P ++ +L A + K+ + K A + I + VI+G
Sbjct: 371 PAQVVVVNXQDELXPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIGA 430
Query: 819 RELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 852
E LK++ + ++ ++ ++ EEI+RRL
Sbjct: 431 DEAAAQKSSLKDLQSGEQVEVALADLAEEIKRRL 464
>pdb|3HRK|A Chain A, Histidyl-Trna Synthetase From Trypanosoma Cruzi
(Histidyl-Adenylate Complex)
pdb|3HRK|B Chain B, Histidyl-Trna Synthetase From Trypanosoma Cruzi
(Histidyl-Adenylate Complex)
pdb|3LC0|A Chain A, Histidyl-Trna Synthetase From Trypanosoma Cruzi (Histidine
Complex)
Length = 456
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 118/438 (26%), Positives = 197/438 (44%), Gaps = 38/438 (8%)
Query: 435 KGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED-SKLIYDLA 493
+G RDF E M R F + K G D PV E E + K GE+ ++ +++
Sbjct: 33 QGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEEITEQMFNFI 92
Query: 494 DQGGELCSLRYDLTVPFARYVAMNG---LTSFKRHQIAKVYRRDNPSKGRYREFYQCDFD 550
+GG +LR ++T AR + G L K + I + +R + ++GR RE YQ + D
Sbjct: 93 TKGGHRVALRPEMTPSLARLLLGKGRSLLLPAKWYSIPQCWRYEAITRGRRREHYQWNMD 152
Query: 551 IAGQYERMGPDFEVVKILTELLNELDIG--DYEIKLNHRLLLDGMLEICGVPSEKFRTIC 608
I G + + + E+V + L + D IK+N R +L ++E GV S+KF +C
Sbjct: 153 IVG-VKSVSAEVELVCAACWAMRSLGLSSKDVGIKVNSRKVLQTVVEQAGVTSDKFAPVC 211
Query: 609 SSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLENS 668
+DK++K E+++ ++ GL D I T + L+ +
Sbjct: 212 VIVDKMEKIPREEVEAQLA-VLGLEPTVVDAITTTL-----------SLKSIDEIAQRVG 259
Query: 669 SAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTGV-----------GSIAAGGR 717
A+ +L F+ +E D V+FD S+ RGL YYTG+ ++ GGR
Sbjct: 260 EEHEAVKELRQFFEQVEAYGYGDWVLFDASVVRGLAYYTGIVFEGFDREGKFRALCGGGR 319
Query: 718 YDNLIGMFGTK-QVPAVGVSLGIERVFTIMEQIQKER-NQIIRATETQVLVGLLGDKLPL 775
YDNL+ +G+ +P G G I+E +Q++R I V++ P
Sbjct: 320 YDNLLTTYGSPTPIPCAGFGFGD---CVIVELLQEKRLLPDIPHVVDDVVIPFDESMRPH 376
Query: 776 AAELVSELWNAKVKAEYMV-HKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNI--D 832
A ++ L +A A+ ++ KKV++ + A V+V E G V++K +
Sbjct: 377 ALAVLRRLRDAGRSADIILDKKKVVQAFNYADRVGAVRAVLVAPEEWERGEVQVKMLREG 436
Query: 833 TTQEEVISRSNFVEEIQR 850
T +EE + F + R
Sbjct: 437 TGKEEGGAERGFAVPLDR 454
>pdb|3HRI|A Chain A, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|B Chain B, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|C Chain C, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|D Chain D, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|E Chain E, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|F Chain F, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
Length = 456
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 91/322 (28%), Positives = 151/322 (46%), Gaps = 31/322 (9%)
Query: 435 KGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED-SKLIYDLA 493
+G RDF E M +R+ F + ++ G D+PV E E + K GE+ ++ +++
Sbjct: 33 QGCRDFPPETMRLRKYLFDVFHSTARKFGFEEYDSPVLESEELYIRKAGEEITEQMFNFI 92
Query: 494 DQGGELCSLRYDLTVPFARYVAMNG---LTSFKRHQIAKVYRRDNPSKGRYREFYQCDFD 550
+GG +LR ++T AR + G L K + I + +R + ++GR RE YQ + D
Sbjct: 93 TKGGHRVALRPEMTPSLARQLLAKGRSLLLPAKWYSIPQCWRYEAITRGRRREHYQWNMD 152
Query: 551 IAGQYERMGPDFEVVKILTELLNELDIG--DYEIKLNHRLLLDGMLEICGVPSEKFRTIC 608
I G + + + E+V + L + D +K+N R +L ++E GV ++KF +C
Sbjct: 153 IIG-VKSVSSEVELVCAACTAMQSLGLSSKDVGVKINSRKILQTVVEQAGVSADKFAPVC 211
Query: 609 SSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLENS 668
+DK++K E++ ++ GL D I + + L + + E
Sbjct: 212 VIVDKMEKLPREEVVAQLA-AIGLESNVVDAITSTLS--------LKTIDEIAQRIGEEH 262
Query: 669 SAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTGV-----------GSIAAGGR 717
A L D +E D V+FD S+ RGL YYTG+ ++ GGR
Sbjct: 263 EAVRELRD---FITQIEAYGFGDWVIFDASVVRGLAYYTGIVFEGFDRDGNFRALCGGGR 319
Query: 718 YDNLIGMFGTKQ-VPAVGVSLG 738
YDNL+ +G+ VP VG G
Sbjct: 320 YDNLLTTYGSPTAVPCVGFGFG 341
>pdb|1WU7|A Chain A, Crystal Structure Of Histidyl-Trna Synthetase From
Thermoplasma Acidophilum
pdb|1WU7|B Chain B, Crystal Structure Of Histidyl-Trna Synthetase From
Thermoplasma Acidophilum
Length = 434
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 121/444 (27%), Positives = 196/444 (44%), Gaps = 62/444 (13%)
Query: 435 KGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDS-KLIYDLA 493
+G RDF E V + F E + G +D P E + K GE+ + Y
Sbjct: 10 RGFRDFYPEDXDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFV 69
Query: 494 DQGGELCSLRYDLTVPFARYVAMNGLTS-------FKRHQIAKVYRRDNPSKGRYREFYQ 546
D+GG +L +P A + +TS + + KV+R + P GRYRE YQ
Sbjct: 70 DKGGREVTL-----IPEATPSTVRXVTSRKDLQRPLRWYSFPKVWRYEEPQAGRYREHYQ 124
Query: 547 CDFDIAGQYERMGPDFEVVKILTELLNELDIGD-YEIKLNHRLLLDGMLEICGVPSEKFR 605
+ DI G + D EV+ + + +L+ L + D YEI++N R + + + I G S
Sbjct: 125 FNADIFGS-DSPEADAEVIALASSILDRLGLQDIYEIRINSRKIXEEI--IGGXTSSDPF 181
Query: 606 TICSSIDKLDKQSFE----QIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLR--Q 659
++ S ID+ K S E Q++ + E G+S AD L S R
Sbjct: 182 SVFSIIDRYHKISREEFVDQLRSAGIGEDGVSX-IAD--------------LCSGTRGID 226
Query: 660 EGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTGV---------- 709
E + SS ++A + L S + V +D S+ RGL YYTG+
Sbjct: 227 EXARITGKSSEEIA---RXAAVEDLLASYGVKNVRYDFSIVRGLSYYTGIVFEAYDRSGQ 283
Query: 710 -GSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVL--V 766
+I GGRYDNL + + VPAVG G + V +++ +++E QI R ++ + V
Sbjct: 284 FRAILGGGRYDNLASLXSGESVPAVGFGXG-DAVISLL--LKRENVQIPREKKSVYICRV 340
Query: 767 GLLGDKL--PLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEG 824
G + + + +L N V+ + + + + A + VI GER+L G
Sbjct: 341 GKINSSIXNEYSRKLRERGXNVTVE---IXERGLSAQLKYASAIGADFAVIFGERDLERG 397
Query: 825 IVKLKNIDTTQEEVISRSNFVEEI 848
+V ++N T +E + + VE +
Sbjct: 398 VVTIRNXYTGSQENVGLDSVVEHL 421
>pdb|1ADJ|A Chain A, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADJ|B Chain B, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADJ|C Chain C, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADJ|D Chain D, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADY|A Chain A, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1ADY|B Chain B, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1ADY|C Chain C, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1ADY|D Chain D, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1H4V|B Chain B, Histidyl-Trna Synthetase From Thermus Thermophilus (Ligand
Free)
Length = 421
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 106/442 (23%), Positives = 193/442 (43%), Gaps = 70/442 (15%)
Query: 435 KGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLI----Y 490
+GT+D +++ + ++ + +V + GA+ L TP+FE + G + ++ +
Sbjct: 7 RGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMF 66
Query: 491 DLADQGGELCSLRYDLTVPFARYVAMNGLTSFKRH----QIAKVYRRDNPSKGRYREFYQ 546
D+GG +LR + T R +G+ + + ++R + P KGRYR+F+Q
Sbjct: 67 TFQDRGGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKGRYRQFHQ 126
Query: 547 CDFDIAGQYERMGPDFEVVKILTELLNELDIGDYEIKLNHRLLLDGMLEICGVPSEKFR- 605
+++ G E D E V +L E L EL + ++KL+ G P ++ R
Sbjct: 127 VNYEALGS-ENPILDAEAVVLLYECLKELGLRRLKVKLSS----------VGDPEDRARY 175
Query: 606 -TICSSIDKLDKQSFEQIKKEMVEEKGLSV--ETADRIGTFVKERG-SPLVLLSKLRQEG 661
+ +++ + KE +EE + + ++R +KE G P+ L L +E
Sbjct: 176 NAYLREVLSPHREALSEDSKERLEENPMRILDSKSERDQALLKELGVRPM--LDFLGEEA 233
Query: 662 SLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTGVG----------- 710
L+ L + L + ++ + +L RGLDYY
Sbjct: 234 RAHLKEVERHL--ERLSVPYE------------LEPALVRGLDYYVRTAFEVHHEEIGAQ 279
Query: 711 -SIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQ----IQKERNQ---IIRATET 762
++ GGRYD L + G +VP VG + G+ERV +E + +E+ +I TE
Sbjct: 280 SALGGGGRYDGLSELLGGPRVPGVGFAFGVERVALALEAEGFGLPEEKGPDLYLIPLTEE 339
Query: 763 QVLVGLLGDKLPLAAELVSELWNAKVKAEY-MVHKKVMKLIDRARESKIPWMVIVGEREL 821
V A ++E +++AEY + +K K ++ A + + +GE EL
Sbjct: 340 AV----------AEAFYLAEALRPRLRAEYALAPRKPAKGLEEALKRGAAFAGFLGEDEL 389
Query: 822 NEGIVKLKNIDTTQEEVISRSN 843
G V LK + T ++ +SR
Sbjct: 390 RAGEVTLKRLATGEQVRLSREE 411
>pdb|3RAC|A Chain A, Crystal Strucutre Of Histidine--Trna Ligase Subunit From
Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius
Dsm 446
Length = 373
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 96/349 (27%), Positives = 154/349 (44%), Gaps = 39/349 (11%)
Query: 429 RLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLM-GKYGEDSK 487
R P + G DFAK + AV + S + + G + + +FE +TL+ + E S+
Sbjct: 25 RPPGMQDGYPDFAKRRRAVETRLLSFVEDA----GYEPVTSGLFEYVDTLLRARSPESSR 80
Query: 488 LIYDLADQGGELCSLRYDLTVPFARYVA---MNGLTSFKRHQIAKVYRR-DNPSK----- 538
L D GG+ +LR ++T AR A G T + +VYRR D+P+
Sbjct: 81 DWIRLFDGGGDAVALRPEMTPSIARMAAPRVAAGRTPIRWCYCERVYRRTDDPASLSWAS 140
Query: 539 GRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIGDYEIKLNHRLLLDGMLEICG 598
G+ E Q + G+ + D +V+++L E + + I ++H L+ +L+ G
Sbjct: 141 GKAAESTQVGIERIGEEASVDVDMDVLRLLHEASAAAGVRHHRIVVSHARLVPRLLDALG 200
Query: 599 VPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKG------LSVETADRIGTFVKERGSPLV 652
+ + R + + + F ++ + + L+ A+R S
Sbjct: 201 ISASLSRAFLACLTSGNYVQFRELWQLHAAKDVDLLANLLTWSPAERDAAKRSREASDRE 260
Query: 653 LLSKLRQEGSLFLENSSAKLALDDLEILF---QALEKSK-CIDKVVFDLSLARGLDYYT- 707
L + LR ++ +A D L +AL S D V FDL+L R LDYYT
Sbjct: 261 LEALLRDA----VDPRAAADVRDAWRYLCRLAEALHDSGLASDVVTFDLALHRELDYYTG 316
Query: 708 --------GVGS-IAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIME 747
GVG+ IA GGRYD L+ FG PAVG + +ERV ++E
Sbjct: 317 LVFEMFAPGVGAPIAQGGRYDELLAQFGAG-APAVGFAFEVERVMAVLE 364
>pdb|1HTT|A Chain A, Histidyl-Trna Synthetase
pdb|1HTT|B Chain B, Histidyl-Trna Synthetase
pdb|1HTT|C Chain C, Histidyl-Trna Synthetase
pdb|1HTT|D Chain D, Histidyl-Trna Synthetase
Length = 423
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 100/461 (21%), Positives = 178/461 (38%), Gaps = 95/461 (20%)
Query: 435 KGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLI----Y 490
+G D+ + A+ ++ + V +G + P+ E GE + ++ Y
Sbjct: 8 RGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMY 67
Query: 491 DLADQGGELCSLRYDLTVPFARYVAMNGLTSFKRHQ---IAKVYRRDNPSKGRYREFYQC 547
D+ G+ +LR + T R +GL + + I ++R + P KGRYR+F+Q
Sbjct: 68 TFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQL 127
Query: 548 DFDIAGQYERMGPD------------FEVVKILTELLNELD-IGDYEIKLNHRLLLDGML 594
++ G GPD + + I + EL+ IG E + N+R L L
Sbjct: 128 GCEVFGL---QGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALVAFL 184
Query: 595 EICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLL 654
E +KLD E K+ M +PL +L
Sbjct: 185 E-------------QHKEKLD----EDCKRRMYT--------------------NPLRVL 207
Query: 655 SKLRQEGSLFLENSSA------KLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG 708
E L ++ A + + + L + LE + V + L RGLDYY
Sbjct: 208 DSKNPEVQALLNDAPALGDYLDEESREHFAGLCKLLESAGIAYTV--NQRLVRGLDYYNR 265
Query: 709 V------------GSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQ- 755
G++ AGGRYD L+ G + PAVG ++G+ER+ +++ + E
Sbjct: 266 TVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQAVNPEFKAD 325
Query: 756 -------IIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARES 808
+ +TQ + LA L EL K+ + K RA +
Sbjct: 326 PVVDIYLVASGADTQSAA------MALAERLRDELPGVKLMTNHG-GGNFKKQFARADKW 378
Query: 809 KIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQ 849
V++GE E+ G +K++ + ++ +++ + ++
Sbjct: 379 GARVAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLR 419
>pdb|2EL9|A Chain A, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|B Chain B, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|C Chain C, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|D Chain D, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
Length = 431
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 100/461 (21%), Positives = 178/461 (38%), Gaps = 95/461 (20%)
Query: 435 KGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLI----Y 490
+G D+ + A+ ++ + V +G + P+ E GE + ++ Y
Sbjct: 16 RGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMY 75
Query: 491 DLADQGGELCSLRYDLTVPFARYVAMNGLTSFKRHQ---IAKVYRRDNPSKGRYREFYQC 547
D+ G+ +LR + T R +GL + + I ++R + P KGRYR+F+Q
Sbjct: 76 TFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQL 135
Query: 548 DFDIAGQYERMGPD------------FEVVKILTELLNELD-IGDYEIKLNHRLLLDGML 594
++ G GPD + + I + EL+ IG E + N+R L L
Sbjct: 136 GCEVFGL---QGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALVAFL 192
Query: 595 EICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLL 654
E +KLD E K+ M +PL +L
Sbjct: 193 E-------------QHKEKLD----EDCKRRMYT--------------------NPLRVL 215
Query: 655 SKLRQEGSLFLENSSA------KLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG 708
E L ++ A + + + L + LE + V + L RGLDYY
Sbjct: 216 DSKNPEVQALLNDAPALGDYLDEESREHFAGLCKLLESAGIAYTV--NQRLVRGLDYYNR 273
Query: 709 V------------GSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQ- 755
G++ AGGRYD L+ G + PAVG ++G+ER+ +++ + E
Sbjct: 274 TVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQAVNPEFKAD 333
Query: 756 -------IIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARES 808
+ +TQ + LA L EL K+ + K RA +
Sbjct: 334 PVVDIYLVASGADTQSAA------MALAERLRDELPGVKLMTNHG-GGNFKKQFARADKW 386
Query: 809 KIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQ 849
V++GE E+ G +K++ + ++ +++ + ++
Sbjct: 387 GARVAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLR 427
>pdb|1KMM|A Chain A, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|B Chain B, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|C Chain C, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|D Chain D, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMN|A Chain A, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|B Chain B, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|C Chain C, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|D Chain D, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
Length = 424
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 100/461 (21%), Positives = 178/461 (38%), Gaps = 95/461 (20%)
Query: 435 KGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLI----Y 490
+G D+ + A+ ++ + V +G + P+ E GE + ++ Y
Sbjct: 9 RGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMY 68
Query: 491 DLADQGGELCSLRYDLTVPFARYVAMNGLTSFKRHQ---IAKVYRRDNPSKGRYREFYQC 547
D+ G+ +LR + T R +GL + + I ++R + P KGRYR+F+Q
Sbjct: 69 TFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQL 128
Query: 548 DFDIAGQYERMGPD------------FEVVKILTELLNELD-IGDYEIKLNHRLLLDGML 594
++ G GPD + + I + EL+ IG E + N+R L L
Sbjct: 129 GCEVFGL---QGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALVAFL 185
Query: 595 EICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLL 654
E +KLD E K+ M +PL +L
Sbjct: 186 E-------------QHKEKLD----EDCKRRMYT--------------------NPLRVL 208
Query: 655 SKLRQEGSLFLENSSA------KLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG 708
E L ++ A + + + L + LE + V + L RGLDYY
Sbjct: 209 DSKNPEVQALLNDAPALGDYLDEESREHFAGLCKLLESAGIAYTV--NQRLVRGLDYYNR 266
Query: 709 V------------GSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQ- 755
G++ AGGRYD L+ G + PAVG ++G+ER+ +++ + E
Sbjct: 267 TVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQAVNPEFKAD 326
Query: 756 -------IIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARES 808
+ +TQ + LA L EL K+ + K RA +
Sbjct: 327 PVVDIYLVASGADTQSAA------MALAERLRDELPGVKLMTNHG-GGNFKKQFARADKW 379
Query: 809 KIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQ 849
V++GE E+ G +K++ + ++ +++ + ++
Sbjct: 380 GARVAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLR 420
>pdb|4E51|A Chain A, Crystal Structure Of A Histidyl-Trna Synthetase Hisrs From
Burkholderia Thailandensis Bound To Histidine
pdb|4E51|B Chain B, Crystal Structure Of A Histidyl-Trna Synthetase Hisrs From
Burkholderia Thailandensis Bound To Histidine
Length = 467
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 106/451 (23%), Positives = 176/451 (39%), Gaps = 74/451 (16%)
Query: 424 SNESRRLPKLP--KGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGK 481
+ + R+L KL KG D + + E + + + + +G + TP+ E
Sbjct: 23 TEQKRKLEKLTGVKGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRG 82
Query: 482 YGEDSKLI----YDLADQ-GGELCSLRYDLTVPFARY-VAMNGLTSFKRH--QIAKVYRR 533
GE + ++ Y D GE +LR + T R + N L + I ++R
Sbjct: 83 IGEVTDIVEKEMYSFVDALNGENLTLRPENTAAVVRAAIEHNMLYDGPKRLWYIGPMFRH 142
Query: 534 DNPSKGRYREFYQCDFDIAGQYERMGPDF--EVVKILTELLNELDIGDYEIKLNHRLLLD 591
+ P +GRYR+F+Q + G GPD E+V + L +L + ++++N L +
Sbjct: 143 ERPQRGRYRQFHQVGVEALG---FAGPDADAEIVMMCQRLWEDLGLTGIKLEINSLGLAE 199
Query: 592 GMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPL 651
E E + + DKLD + ++ +PL
Sbjct: 200 ---ERAAHRVELIKYLEQHADKLDDDAQRRLYT------------------------NPL 232
Query: 652 VLLSKLRQEGSLFLENSSAKLAL--DDLEILFQALEKSKCIDKVVFDLS--LARGLDYYT 707
+L + N+ + D F+ L++ + V F ++ L RGLDYY
Sbjct: 233 RVLDTKNPALQEIVRNAPKLIDFLGDVSRAHFEGLQRLLKANNVPFTINPRLVRGLDYYN 292
Query: 708 ------------GVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQ 755
G++AAGGRYD LI G K A G ++GIER+ ++ KE +
Sbjct: 293 LTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGKPTAACGWAMGIERILELL----KEEHL 348
Query: 756 IIRATETQVLVGLLGDKLPLAAELVSE---------LWNAKVKAEYMVHKKVMKLIDRAR 806
+ V V GD A +V+E + + K MK RA
Sbjct: 349 VPEQEGVDVYVVHQGDAAREQAFIVAERLRDTGLDVILHCSADGAGASFKSQMK---RAD 405
Query: 807 ESKIPWMVIVGERELNEGIVKLKNIDTTQEE 837
S + VI GE E+ G +K + T ++
Sbjct: 406 ASGAAFAVIFGEDEVTNGTASVKPLRGTGDD 436
>pdb|3OD1|A Chain A, The Crystal Structure Of An Atp Phosphoribosyltransferase
Regulatory SubunitHISTIDYL-Trna Synthetase From Bacillus
Halodurans C
pdb|3OD1|B Chain B, The Crystal Structure Of An Atp Phosphoribosyltransferase
Regulatory SubunitHISTIDYL-Trna Synthetase From Bacillus
Halodurans C
Length = 400
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/335 (24%), Positives = 136/335 (40%), Gaps = 33/335 (9%)
Query: 434 PKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLA 493
P G RD E ++ TE G ++TP E ET+ + ++ L
Sbjct: 13 PFGXRDTLPEWYKTKKNICDQXTEEINLWGYDXIETPTLEYYETVGVVSAILDQQLFKLL 72
Query: 494 DQGGELCSLRYDLTVPFARYVA---MNGLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFD 550
DQ G LR D T P AR VA + + + VYR G+ EF Q +
Sbjct: 73 DQQGNTLVLRPDXTAPIARLVASSLKDRAYPLRLAYQSNVYRAQQNEGGKPAEFEQLGVE 132
Query: 551 IAGQYERMGPDFEVVKILTELLNELDIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSS 610
+ G D EV+ + L + ++++ + H ++ +L V +E+
Sbjct: 133 LIGD-GTASADGEVIALXIAALKRAGLSEFKVAIGHVGYVNALLXDV-VGNEQ------R 184
Query: 611 IDKLDKQSFEQIK---KEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLEN 667
D+L + +E+ +E V+ LS R+ + RG + +E ++
Sbjct: 185 ADRLRRFLYEKNYVGYREHVKSLNLSTIDKSRLXNLLSLRGGRAAI-----EEARGLIQT 239
Query: 668 SSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTGV-----GS-----IAAGGR 717
K AL + L++ LE + V FDL+L YYTGV G+ + +GGR
Sbjct: 240 EKGKTALAEXTKLYEVLESYGASEYVKFDLTLVLHXSYYTGVVFEGYGNRLGVPLCSGGR 299
Query: 718 YDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKE 752
YD L+ F PA G+ R+ ++E + E
Sbjct: 300 YDELLSKF---HRPAQATGFGV-RIDLLVEALNGE 330
>pdb|1QE0|A Chain A, Crystal Structure Of Apo S. Aureus Histidyl-Trna
Synthetase
pdb|1QE0|B Chain B, Crystal Structure Of Apo S. Aureus Histidyl-Trna
Synthetase
Length = 420
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 96/449 (21%), Positives = 179/449 (39%), Gaps = 61/449 (13%)
Query: 432 KLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLI-- 489
K+P+GT+D E + + E+ + + TP+FE + G+ + ++
Sbjct: 3 KIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQK 62
Query: 490 --YDLADQGGELCSLRYDLTVPFAR-YVAM----NGLTSFKRHQIAKVYRRDNPSKGRYR 542
Y D+G +LR + T R Y+ N K + ++R + KGRYR
Sbjct: 63 EMYTFKDKGDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGRYR 122
Query: 543 EFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIGDYEIKLNHRLLLDGMLEICGVPSE 602
+F Q + G E D EV+ ++ + + ++ +N + E +
Sbjct: 123 QFNQFGVEAIGA-ENPSVDAEVLAMVMHIYQSFGLKHLKLVINSVGDMASRKEYNEALVK 181
Query: 603 KFRTI----CSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLR 658
F + CS +I V+ +++TA RI F+ E
Sbjct: 182 HFEPVIHEFCSDCQSRLHTDPMRILDCKVDRDKEAIKTAPRITDFLNE------------ 229
Query: 659 QEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYT----------- 707
E + E K LDDL I + D +L RGLDYYT
Sbjct: 230 -ESKAYYE--QVKAYLDDLGIPYTE------------DPNLVRGLDYYTHTAFELMMDNP 274
Query: 708 ----GVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQ 763
+ ++ GGRY+ L+ + +G +L IER+ +E+ E +
Sbjct: 275 NYDGAITTLCGGGRYNGLLELLDGPSETGIGFALSIERLLLALEEEGIELDI---EENLD 331
Query: 764 VLVGLLGDKLP-LAAELVSELWNAKVKAEY-MVHKKVMKLIDRARESKIPWMVIVGEREL 821
+ + +GD+ A +L++ L + +KA+ + +K+ + +A + +++G++EL
Sbjct: 332 LFIVTMGDQADRYAVKLLNHLRHNGIKADKDYLQRKIKGQMKQADRLGAKFTIVIGDQEL 391
Query: 822 NEGIVKLKNIDTTQEEVISRSNFVEEIQR 850
+ +KN+ T + E I VE ++
Sbjct: 392 ENNKIDVKNMTTGESETIELDALVEYFKK 420
>pdb|1Z7M|A Chain A, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From
Lactococcus Lactis
pdb|1Z7M|B Chain B, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From
Lactococcus Lactis
pdb|1Z7M|C Chain C, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From
Lactococcus Lactis
pdb|1Z7M|D Chain D, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From
Lactococcus Lactis
pdb|1Z7N|A Chain A, Atp Phosphoribosyl Transferase (Hiszg Atp-Prtase) From
Lactococcus Lactis With Bound Prpp Substrate
pdb|1Z7N|B Chain B, Atp Phosphoribosyl Transferase (Hiszg Atp-Prtase) From
Lactococcus Lactis With Bound Prpp Substrate
pdb|1Z7N|C Chain C, Atp Phosphoribosyl Transferase (Hiszg Atp-Prtase) From
Lactococcus Lactis With Bound Prpp Substrate
pdb|1Z7N|D Chain D, Atp Phosphoribosyl Transferase (Hiszg Atp-Prtase) From
Lactococcus Lactis With Bound Prpp Substrate
Length = 344
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/277 (20%), Positives = 114/277 (41%), Gaps = 29/277 (10%)
Query: 489 IYDLADQGGELCSLRYDLTVPFAR-YVAMNGLTSFKRHQIAKVYRRDNPSKGRYREFYQC 547
++ G+ +LRYD T+P R Y + TS + K++R++ KGR E YQ
Sbjct: 84 MFQFIKHEGQSITLRYDFTLPLVRLYSQIKDSTSARYSYFGKIFRKEKRHKGRSTENYQI 143
Query: 548 DFDIAGQYERMGPDFEVVKILTELLNELDIGDYEIKLNHRLLLDGMLEICGVPSEKFRTI 607
++ G+ + E++ + +++ +L + ++ + ++ +E +
Sbjct: 144 GIELFGESADKS-ELEILSLALQVIEQLGLNKTVFEIGSAKFFQRLCQLADGSTELLTEL 202
Query: 608 CSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLEN 667
D +F + E +GL E F+ LS+L + N
Sbjct: 203 LLKKDLSGLNAFIEKNNFSKELRGLLKE------IFITNE------LSRLEN----LVTN 246
Query: 668 SSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTGV----------GSIAAGGR 717
+ + + + L + EK I ++ DL + +DYYT + I +GGR
Sbjct: 247 TKDDVLISSFDQLKEFSEKLSMIKPIIIDLGMVPKMDYYTDLMFKAYSSAANQPILSGGR 306
Query: 718 YDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERN 754
YD L+ F ++ A+G ++ + +E+ + E +
Sbjct: 307 YDQLLSNF-QEEAFAIGFCCHMDTILKALERQELEED 342
>pdb|1NYQ|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With An Analogue Of Threonyl
Adenylate
pdb|1NYQ|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With An Analogue Of Threonyl
Adenylate
pdb|1NYR|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With Atp
pdb|1NYR|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With Atp
Length = 645
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 802 IDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFV 845
I A+ KIP+ ++VG++E+ V ++ + +E + + F+
Sbjct: 589 IREAQMQKIPYQIVVGDKEVENNQVNVRQYGSQDQETVEKDEFI 632
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 738 GIERVFTIMEQIQKERNQIIRATETQV 764
G+E VF IME +ERN +++ T++Q+
Sbjct: 1577 GVESVFDIMEMEDEERNALLQLTDSQI 1603
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 738 GIERVFTIMEQIQKERNQIIRATETQV 764
G+E VF IME +ERN +++ T++Q+
Sbjct: 1577 GVESVFDIMEMEDEERNALLQLTDSQI 1603
>pdb|2ZKQ|HH Chain h, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 130
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 564 VVKILTELLNELDIGDYEIKLNHR-----LLLDGMLEICGVPSEKF 604
+V+ LT ++ IG++EI +HR + L G L CGV S +F
Sbjct: 34 IVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRF 79
>pdb|1G5I|A Chain A, Crystal Structure Of The Accessory Subunit Of Murine
Mitochondrial Polymerase Gamma
pdb|1G5I|B Chain B, Crystal Structure Of The Accessory Subunit Of Murine
Mitochondrial Polymerase Gamma
pdb|1G5I|C Chain C, Crystal Structure Of The Accessory Subunit Of Murine
Mitochondrial Polymerase Gamma
pdb|1G5I|D Chain D, Crystal Structure Of The Accessory Subunit Of Murine
Mitochondrial Polymerase Gamma
Length = 454
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 28/46 (60%)
Query: 794 VHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVI 839
VH + +L + E + + V+V E L G+++L++ DTT +E++
Sbjct: 379 VHSSLEQLHSKYDEMSVLFSVLVTETTLENGLIQLRSRDTTMKEMM 424
>pdb|3RV8|A Chain A, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Cyclopropyl R-Group
pdb|3RV8|B Chain B, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Cyclopropyl R-Group
pdb|3RV8|C Chain C, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Cyclopropyl R-Group
pdb|3RV8|D Chain D, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Cyclopropyl R-Group
pdb|3ST6|A Chain A, Structure Of A M. Tuberculosis Synthase, Mbti, In Complex
With An Isochorismate Analogue Inhibitor
pdb|3ST6|B Chain B, Structure Of A M. Tuberculosis Synthase, Mbti, In Complex
With An Isochorismate Analogue Inhibitor
pdb|3ST6|C Chain C, Structure Of A M. Tuberculosis Synthase, Mbti, In Complex
With An Isochorismate Analogue Inhibitor
pdb|3ST6|D Chain D, Structure Of A M. Tuberculosis Synthase, Mbti, In Complex
With An Isochorismate Analogue Inhibitor
Length = 450
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 15/134 (11%)
Query: 610 SIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVL-LSKLRQEGSLFLENS 668
+ID+L + E KE+VE +SV ++ T + E GS V+ +R+ GS+ S
Sbjct: 279 AIDRLARDDLESNSKEIVEH-AISVRSSLEEITDIAEPGSAAVIDFMTVRERGSVQHLGS 337
Query: 669 SAKLALDD-------LEILFQALEKSKCID----KVVFDLS-LARGLDYYTGVGSIAAGG 716
+ + LD LE LF A+ S + +F L RGL Y V ++A G
Sbjct: 338 TIRARLDPSSDRMAALEALFPAVTASGIPKAAGVEAIFRLDECPRGL-YSGAVVMLSADG 396
Query: 717 RYDNLIGMFGTKQV 730
D + + QV
Sbjct: 397 GLDAALTLRAAYQV 410
>pdb|2G5F|A Chain A, The Structure Of Mbti From Mycobacterium Tuberculosis, The
First Enzyme In The Synthesis Of Mycobactin, Reveals It
To Be A Salicylate Synthase
pdb|2G5F|B Chain B, The Structure Of Mbti From Mycobacterium Tuberculosis, The
First Enzyme In The Synthesis Of Mycobactin, Reveals It
To Be A Salicylate Synthase
pdb|2G5F|C Chain C, The Structure Of Mbti From Mycobacterium Tuberculosis, The
First Enzyme In The Synthesis Of Mycobactin, Reveals It
To Be A Salicylate Synthase
pdb|2G5F|D Chain D, The Structure Of Mbti From Mycobacterium Tuberculosis, The
First Enzyme In The Synthesis Of Mycobactin, Reveals It
To Be A Salicylate Synthase
pdb|3RV6|A Chain A, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Phenyl R-Group
pdb|3RV6|B Chain B, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Phenyl R-Group
pdb|3RV7|A Chain A, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Isopropyl R-Group
pdb|3RV7|B Chain B, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Isopropyl R-Group
pdb|3RV7|C Chain C, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Isopropyl R-Group
pdb|3RV7|D Chain D, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Isopropyl R-Group
pdb|3RV9|A Chain A, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Ethyl R-Group
pdb|3RV9|B Chain B, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Ethyl R-Group
pdb|3RV9|C Chain C, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Ethyl R-Group
pdb|3RV9|D Chain D, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Ethyl R-Group
Length = 450
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 15/134 (11%)
Query: 610 SIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVL-LSKLRQEGSLFLENS 668
+ID+L + E KE+VE +SV ++ T + E GS V+ +R+ GS+ S
Sbjct: 279 AIDRLARDDLESNSKEIVEH-AISVRSSLEEITDIAEPGSAAVIDFMTVRERGSVQHLGS 337
Query: 669 SAKLALDD-------LEILFQALEKSKCID----KVVFDLS-LARGLDYYTGVGSIAAGG 716
+ + LD LE LF A+ S + +F L RGL Y V ++A G
Sbjct: 338 TIRARLDPSSDRMAALEALFPAVTASGIPKAAGVEAIFRLDECPRGL-YSGAVVMLSADG 396
Query: 717 RYDNLIGMFGTKQV 730
D + + QV
Sbjct: 397 GLDAALTLRAAYQV 410
>pdb|2I6Y|A Chain A, Structure And Mechanism Of Mycobacterium Tuberculosis
Salicylate Synthase, Mbti
Length = 470
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 15/134 (11%)
Query: 610 SIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVL-LSKLRQEGSLFLENS 668
+ID+L + E KE+VE +SV ++ T + E GS V+ +R+ GS+ S
Sbjct: 299 AIDRLARDDLESNSKEIVEH-AISVRSSLEEITDIAEPGSAAVIDFMTVRERGSVQHLGS 357
Query: 669 SAKLALDD-------LEILFQALEKSKCID----KVVFDLS-LARGLDYYTGVGSIAAGG 716
+ + LD LE LF A+ S + +F L RGL Y V ++A G
Sbjct: 358 TIRARLDPSSDRMAALEALFPAVTASGIPKAAGVEAIFRLDECPRGL-YSGAVVMLSADG 416
Query: 717 RYDNLIGMFGTKQV 730
D + + QV
Sbjct: 417 GLDAALTLRAAYQV 430
>pdb|3LOG|A Chain A, Crystal Structure Of Mbti From Mycobacterium Tuberculosis
pdb|3LOG|B Chain B, Crystal Structure Of Mbti From Mycobacterium Tuberculosis
pdb|3LOG|C Chain C, Crystal Structure Of Mbti From Mycobacterium Tuberculosis
pdb|3LOG|D Chain D, Crystal Structure Of Mbti From Mycobacterium Tuberculosis
pdb|3VEH|A Chain A, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor Methylamt
pdb|3VEH|B Chain B, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor Methylamt
pdb|3VEH|C Chain C, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor Methylamt
pdb|3VEH|D Chain D, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor Methylamt
Length = 451
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 15/134 (11%)
Query: 610 SIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVL-LSKLRQEGSLFLENS 668
+ID+L + E KE+VE +SV ++ T + E GS V+ +R+ GS+ S
Sbjct: 281 AIDRLARDDLESNSKEIVEH-AISVRSSLEEITDIAEPGSAAVIDFMTVRERGSVQHLGS 339
Query: 669 SAKLALDD-------LEILFQALEKSKCID----KVVFDLS-LARGLDYYTGVGSIAAGG 716
+ + LD LE LF A+ S + +F L RGL Y V ++A G
Sbjct: 340 TIRARLDPSSDRMAALEALFPAVTASGIPKAAGVEAIFRLDECPRGL-YSGAVVMLSADG 398
Query: 717 RYDNLIGMFGTKQV 730
D + + QV
Sbjct: 399 GLDAALTLRAAYQV 412
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,229,604
Number of Sequences: 62578
Number of extensions: 886695
Number of successful extensions: 2597
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2520
Number of HSP's gapped (non-prelim): 39
length of query: 854
length of database: 14,973,337
effective HSP length: 107
effective length of query: 747
effective length of database: 8,277,491
effective search space: 6183285777
effective search space used: 6183285777
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)