Query 003041
Match_columns 854
No_of_seqs 524 out of 2158
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 15:51:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003041.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003041hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02972 Histidyl-tRNA synthet 100.0 9E-113 2E-117 997.3 29.0 735 4-853 2-761 (763)
2 KOG1936 Histidyl-tRNA syntheta 100.0 2.2E-87 4.7E-92 714.5 21.0 425 428-854 57-517 (518)
3 COG2986 HutH Histidine ammonia 100.0 2.6E-88 5.7E-93 738.4 7.3 309 22-343 51-451 (498)
4 COG0124 HisS Histidyl-tRNA syn 100.0 7.9E-76 1.7E-80 655.4 18.8 405 430-852 3-428 (429)
5 TIGR01225 hutH histidine ammon 100.0 5.6E-77 1.2E-81 676.8 4.1 309 22-343 48-449 (506)
6 TIGR03832 Tyr_2_3_mutase tyros 100.0 1.6E-75 3.5E-80 666.1 3.7 309 22-343 46-466 (507)
7 PRK09367 histidine ammonia-lya 100.0 5.2E-75 1.1E-79 662.0 4.4 309 22-343 51-451 (500)
8 cd00332 PAL-HAL Phenylalanine 100.0 8.9E-74 1.9E-78 644.4 4.5 309 22-343 43-444 (444)
9 PLN02457 phenylalanine ammonia 100.0 4.5E-71 9.7E-76 639.6 10.9 309 22-344 96-517 (706)
10 PF00221 Lyase_aromatic: Aroma 100.0 3.5E-72 7.6E-77 637.8 -2.4 310 22-343 48-447 (473)
11 PLN02530 histidine-tRNA ligase 100.0 4E-68 8.7E-73 614.8 17.1 398 431-844 70-486 (487)
12 PRK12420 histidyl-tRNA synthet 100.0 3.4E-67 7.4E-72 599.5 18.3 398 431-844 4-422 (423)
13 TIGR01226 phe_am_lyase phenyla 100.0 4E-68 8.7E-73 614.2 9.0 311 22-346 81-504 (680)
14 CHL00201 syh histidine-tRNA sy 100.0 9.6E-63 2.1E-67 562.6 17.6 388 431-852 4-418 (430)
15 PRK12292 hisZ ATP phosphoribos 100.0 1.1E-61 2.5E-66 548.1 16.9 359 431-810 3-378 (391)
16 KOG0222 Phenylalanine and hist 100.0 1.8E-60 3.9E-65 511.4 5.7 313 23-347 114-537 (715)
17 TIGR00442 hisS histidyl-tRNA s 100.0 2.1E-59 4.5E-64 532.2 14.1 375 432-834 1-397 (397)
18 PRK00037 hisS histidyl-tRNA sy 100.0 2.4E-58 5.2E-63 526.1 17.2 381 430-852 3-411 (412)
19 PRK12421 ATP phosphoribosyltra 100.0 1.3E-57 2.8E-62 513.4 15.6 363 431-819 7-384 (392)
20 TIGR00443 hisZ_biosyn_reg ATP 100.0 1.4E-53 3E-58 469.1 13.1 299 438-746 1-312 (314)
21 PF13393 tRNA-synt_His: Histid 100.0 2.5E-53 5.5E-58 467.2 5.4 297 436-742 1-311 (311)
22 PRK12295 hisZ ATP phosphoribos 100.0 4E-51 8.8E-56 456.2 12.2 293 447-745 6-370 (373)
23 cd00773 HisRS-like_core Class 100.0 6E-46 1.3E-50 398.6 9.6 243 445-746 2-260 (261)
24 PRK12293 hisZ ATP phosphoribos 100.0 7.7E-45 1.7E-49 391.7 12.6 265 431-747 5-280 (281)
25 COG3705 HisZ ATP phosphoribosy 100.0 1.2E-42 2.5E-47 381.5 12.1 366 430-819 2-381 (390)
26 TIGR00418 thrS threonyl-tRNA s 100.0 3.7E-42 7.9E-47 407.4 15.5 337 433-851 188-562 (563)
27 PRK00413 thrS threonyl-tRNA sy 100.0 2.8E-42 6E-47 414.3 14.0 361 430-853 255-633 (638)
28 KOG1035 eIF-2alpha kinase GCN2 100.0 6.6E-41 1.4E-45 396.3 14.7 455 369-853 843-1351(1351)
29 PRK12305 thrS threonyl-tRNA sy 100.0 8.1E-41 1.8E-45 396.7 13.5 360 432-854 193-571 (575)
30 PRK12444 threonyl-tRNA synthet 100.0 2E-39 4.3E-44 388.3 15.5 337 432-853 261-636 (639)
31 PRK14799 thrS threonyl-tRNA sy 100.0 3.9E-39 8.5E-44 373.5 15.1 354 432-853 155-532 (545)
32 PRK09194 prolyl-tRNA synthetas 100.0 2.8E-37 6.1E-42 364.1 17.2 415 427-849 29-561 (565)
33 PLN02908 threonyl-tRNA synthet 100.0 1.9E-36 4.1E-41 363.5 9.9 359 430-853 306-683 (686)
34 TIGR00409 proS_fam_II prolyl-t 100.0 1.8E-35 3.9E-40 346.3 12.7 429 404-850 13-567 (568)
35 PRK12294 hisZ ATP phosphoribos 100.0 3.6E-35 7.8E-40 313.6 11.7 251 443-727 5-268 (272)
36 PRK12325 prolyl-tRNA synthetas 100.0 5E-32 1.1E-36 310.2 14.3 372 427-849 29-438 (439)
37 TIGR00408 proS_fam_I prolyl-tR 100.0 1E-28 2.2E-33 284.8 11.8 326 432-853 25-382 (472)
38 PLN02837 threonine-tRNA ligase 100.0 2.1E-28 4.7E-33 290.4 14.2 355 433-853 235-609 (614)
39 COG0441 ThrS Threonyl-tRNA syn 99.9 3E-28 6.5E-33 281.3 12.2 354 432-853 207-581 (589)
40 PRK08661 prolyl-tRNA synthetas 99.9 8.6E-28 1.9E-32 277.6 12.9 326 432-853 31-388 (477)
41 PRK04173 glycyl-tRNA synthetas 99.9 1.8E-27 3.9E-32 272.8 12.7 322 432-851 25-455 (456)
42 PRK03991 threonyl-tRNA synthet 99.9 3.3E-27 7.2E-32 278.0 13.9 371 408-853 196-593 (613)
43 cd00771 ThrRS_core Threonyl-tR 99.9 4.6E-23 1E-27 225.3 9.0 155 432-588 17-183 (298)
44 cd00779 ProRS_core_prok Prolyl 99.9 2.3E-23 5E-28 222.7 5.0 163 427-592 13-188 (255)
45 KOG1637 Threonyl-tRNA syntheta 99.9 1.9E-22 4.2E-27 218.8 12.0 353 429-850 176-553 (560)
46 KOG2324 Prolyl-tRNA synthetase 99.9 2.1E-21 4.6E-26 204.8 12.0 359 427-848 34-426 (457)
47 COG0442 ProS Prolyl-tRNA synth 99.8 5E-21 1.1E-25 217.8 6.3 409 427-848 29-498 (500)
48 TIGR00389 glyS_dimeric glycyl- 99.8 8.5E-20 1.9E-24 210.3 15.3 122 730-851 414-550 (551)
49 cd00670 Gly_His_Pro_Ser_Thr_tR 99.8 1.1E-19 2.4E-24 191.8 5.1 143 445-589 2-159 (235)
50 cd00772 ProRS_core Prolyl-tRNA 99.8 2.7E-19 5.9E-24 192.1 5.0 158 428-587 14-190 (264)
51 cd00774 GlyRS-like_core Glycyl 99.8 7.8E-19 1.7E-23 187.8 6.7 140 432-579 19-169 (254)
52 PRK14894 glycyl-tRNA synthetas 99.7 1.1E-17 2.4E-22 187.5 12.5 94 760-853 433-538 (539)
53 PLN02734 glycyl-tRNA synthetas 99.7 2.8E-18 6E-23 200.5 5.9 120 730-853 528-662 (684)
54 cd00778 ProRS_core_arch_euk Pr 99.7 3.5E-18 7.5E-23 183.5 5.4 147 432-578 19-182 (261)
55 COG0423 GRS1 Glycyl-tRNA synth 99.7 6.5E-17 1.4E-21 180.3 8.8 123 730-853 415-552 (558)
56 PF00587 tRNA-synt_2b: tRNA sy 99.7 1.1E-17 2.4E-22 168.7 1.1 147 447-594 1-160 (173)
57 TIGR02367 PylS pyrrolysyl-tRNA 99.5 9.7E-15 2.1E-19 162.4 5.4 133 445-586 239-378 (453)
58 PRK04172 pheS phenylalanyl-tRN 99.5 7.9E-15 1.7E-19 170.7 2.9 143 438-583 225-409 (489)
59 PF12745 HGTP_anticodon2: Anti 99.4 1.8E-13 3.8E-18 146.7 5.6 97 757-853 1-107 (273)
60 cd00770 SerRS_core Seryl-tRNA 99.4 1.6E-13 3.4E-18 150.1 4.9 147 433-583 40-201 (297)
61 PTZ00326 phenylalanyl-tRNA syn 99.3 3.4E-12 7.3E-17 145.5 6.8 151 448-601 231-460 (494)
62 PRK09537 pylS pyrolysyl-tRNA s 99.2 4.1E-12 8.9E-17 142.2 4.7 128 447-583 205-340 (417)
63 PF03129 HGTP_anticodon: Antic 99.2 4.2E-12 9.2E-17 114.7 3.7 88 763-850 1-93 (94)
64 KOG2298 Glycyl-tRNA synthetase 99.2 2E-10 4.4E-15 126.1 14.8 121 732-852 459-592 (599)
65 cd00858 GlyRS_anticodon GlyRS 99.2 1.8E-11 4E-16 116.2 4.7 97 756-853 22-121 (121)
66 cd00768 class_II_aaRS-like_cor 99.2 1.8E-11 3.9E-16 126.4 3.8 129 448-577 2-134 (211)
67 cd00861 ProRS_anticodon_short 99.1 2.6E-11 5.7E-16 109.4 2.6 89 761-849 1-94 (94)
68 TIGR00414 serS seryl-tRNA synt 99.1 4.1E-11 8.9E-16 136.8 4.6 148 433-584 161-323 (418)
69 cd00860 ThrRS_anticodon ThrRS 99.1 6.4E-11 1.4E-15 105.9 4.0 88 761-848 1-90 (91)
70 PRK05431 seryl-tRNA synthetase 99.0 1.5E-10 3.2E-15 132.5 4.2 146 432-582 157-318 (425)
71 cd00862 ProRS_anticodon_zinc P 99.0 2.9E-10 6.4E-15 117.5 4.8 94 760-853 9-111 (202)
72 PRK14938 Ser-tRNA(Thr) hydrola 99.0 4.1E-10 8.9E-15 123.8 5.8 116 736-851 246-366 (387)
73 cd02426 Pol_gamma_b_Cterm C-te 98.9 9E-10 1.9E-14 105.5 3.8 101 753-853 17-127 (128)
74 cd00738 HGTP_anticodon HGTP an 98.9 1.4E-09 3.1E-14 97.7 3.7 88 761-848 1-93 (94)
75 PRK00960 seryl-tRNA synthetase 98.8 2.3E-09 5E-14 123.7 4.7 150 432-582 210-401 (517)
76 PRK09350 poxB regulator PoxA; 98.8 1.9E-09 4.2E-14 118.4 3.8 142 444-600 4-149 (306)
77 cd01594 Lyase_I_like Lyase cla 98.8 7.5E-09 1.6E-13 109.1 6.7 199 72-325 1-223 (231)
78 PLN02678 seryl-tRNA synthetase 98.8 4.1E-09 8.9E-14 120.3 4.0 144 439-584 167-327 (448)
79 cd00859 HisRS_anticodon HisRS 98.7 8.7E-09 1.9E-13 91.3 3.4 87 762-848 2-90 (91)
80 PLN02320 seryl-tRNA synthetase 98.6 1.6E-08 3.4E-13 116.2 4.1 150 435-588 221-388 (502)
81 cd00669 Asp_Lys_Asn_RS_core As 98.5 5.1E-08 1.1E-12 105.2 3.0 112 446-573 2-116 (269)
82 KOG4163 Prolyl-tRNA synthetase 98.4 4.5E-07 9.8E-12 99.2 7.4 351 399-852 56-448 (551)
83 TIGR00415 serS_MJ seryl-tRNA s 98.4 1.6E-07 3.4E-12 107.2 4.1 168 409-586 195-404 (520)
84 PF01409 tRNA-synt_2d: tRNA sy 98.1 1.8E-06 3.9E-11 92.0 4.3 128 448-578 19-157 (247)
85 cd00496 PheRS_alpha_core Pheny 98.0 5.8E-06 1.3E-10 86.7 5.4 121 449-576 4-132 (218)
86 cd00777 AspRS_core Asp tRNA sy 98.0 4.7E-06 1E-10 90.6 3.6 113 446-573 2-116 (280)
87 cd00776 AsxRS_core Asx tRNA sy 97.9 8.2E-06 1.8E-10 90.6 5.0 119 441-574 20-139 (322)
88 COG2269 Truncated, possibly in 97.8 2.8E-05 6.1E-10 81.9 6.8 100 445-554 16-122 (322)
89 TIGR00468 pheS phenylalanyl-tR 97.8 1.7E-05 3.7E-10 86.9 5.2 123 448-578 74-204 (294)
90 PRK00488 pheS phenylalanyl-tRN 97.8 2.8E-05 6.1E-10 85.6 5.8 128 447-584 109-245 (339)
91 COG0172 SerS Seryl-tRNA synthe 97.6 5.7E-05 1.2E-09 85.4 4.8 145 434-583 163-322 (429)
92 TIGR00462 genX lysyl-tRNA synt 97.6 3.6E-05 7.8E-10 84.8 3.1 115 446-573 2-120 (304)
93 COG0016 PheS Phenylalanyl-tRNA 97.4 0.00018 3.8E-09 79.0 6.0 129 444-576 109-244 (335)
94 PLN02853 Probable phenylalanyl 97.4 0.00018 3.9E-09 82.6 6.0 132 449-583 224-401 (492)
95 TIGR00459 aspS_bact aspartyl-t 97.4 0.00011 2.4E-09 87.0 4.3 103 442-554 135-239 (583)
96 COG1190 LysU Lysyl-tRNA synthe 97.4 0.00026 5.6E-09 80.6 6.9 99 444-553 179-280 (502)
97 PRK06462 asparagine synthetase 97.3 0.0002 4.3E-09 80.0 4.1 121 442-573 27-152 (335)
98 PRK00476 aspS aspartyl-tRNA sy 97.2 0.00024 5.3E-09 84.6 4.3 104 441-554 137-242 (588)
99 cd00775 LysRS_core Lys_tRNA sy 97.2 0.00028 6.1E-09 78.6 4.2 116 444-573 7-123 (329)
100 PLN02850 aspartate-tRNA ligase 97.1 0.00036 7.8E-09 82.2 4.5 116 443-573 223-340 (530)
101 PF00152 tRNA-synt_2: tRNA syn 97.1 0.00025 5.4E-09 79.4 3.0 102 444-554 21-127 (335)
102 PRK12445 lysyl-tRNA synthetase 97.1 0.00044 9.6E-09 81.1 4.7 101 443-554 182-285 (505)
103 PLN02903 aminoacyl-tRNA ligase 97.1 0.00041 8.8E-09 82.7 3.9 105 441-554 199-305 (652)
104 TIGR00458 aspS_arch aspartyl-t 97.0 0.00055 1.2E-08 79.0 4.6 118 441-573 129-247 (428)
105 PRK12820 bifunctional aspartyl 97.0 0.00053 1.2E-08 82.6 4.5 105 441-554 152-257 (706)
106 PRK03932 asnC asparaginyl-tRNA 97.0 0.00061 1.3E-08 79.1 4.6 118 442-574 130-256 (450)
107 PTZ00417 lysine-tRNA ligase; P 97.0 0.00059 1.3E-08 80.9 4.4 101 443-554 251-354 (585)
108 COG0173 AspS Aspartyl-tRNA syn 97.0 0.0011 2.3E-08 76.2 6.1 100 443-551 139-239 (585)
109 PRK00484 lysS lysyl-tRNA synth 96.9 0.00059 1.3E-08 79.9 3.9 117 443-573 170-287 (491)
110 PRK05159 aspC aspartyl-tRNA sy 96.9 0.00065 1.4E-08 78.7 4.2 104 441-554 132-236 (437)
111 KOG2509 Seryl-tRNA synthetase 96.9 0.0011 2.3E-08 74.0 5.3 147 433-582 171-334 (455)
112 PLN02502 lysyl-tRNA synthetase 96.9 0.00072 1.6E-08 79.9 4.1 103 443-554 227-330 (553)
113 PTZ00385 lysyl-tRNA synthetase 96.9 0.00076 1.6E-08 80.5 4.2 118 443-574 231-349 (659)
114 TIGR00499 lysS_bact lysyl-tRNA 96.9 0.0007 1.5E-08 79.4 3.8 103 443-554 170-273 (496)
115 PTZ00401 aspartyl-tRNA synthet 96.8 0.0011 2.5E-08 78.1 5.1 116 443-573 211-328 (550)
116 TIGR00457 asnS asparaginyl-tRN 96.7 0.0014 2.9E-08 76.2 4.7 101 444-554 135-244 (453)
117 PTZ00425 asparagine-tRNA ligas 96.6 0.0017 3.7E-08 76.7 4.0 35 441-475 211-245 (586)
118 KOG2411 Aspartyl-tRNA syntheta 96.4 0.006 1.3E-07 68.8 6.4 101 445-553 178-279 (628)
119 PRK02983 lysS lysyl-tRNA synth 96.4 0.0021 4.5E-08 81.8 3.3 103 443-554 768-871 (1094)
120 KOG2784 Phenylalanyl-tRNA synt 96.3 0.0025 5.3E-08 69.3 2.8 81 500-583 309-392 (483)
121 TIGR00470 sepS O-phosphoseryl- 96.3 0.0062 1.4E-07 69.2 5.9 88 495-585 178-269 (533)
122 PLN02603 asparaginyl-tRNA synt 96.2 0.0047 1E-07 73.2 5.0 105 443-553 224-354 (565)
123 PRK09616 pheT phenylalanyl-tRN 95.9 0.0083 1.8E-07 71.7 5.2 126 448-578 361-492 (552)
124 PLN02221 asparaginyl-tRNA synt 95.9 0.0077 1.7E-07 71.4 4.7 33 443-475 169-201 (572)
125 PLN02532 asparagine-tRNA synth 95.8 0.0081 1.8E-07 71.6 4.6 33 443-475 233-265 (633)
126 COG0017 AsnS Aspartyl/asparagi 95.6 0.0069 1.5E-07 68.8 2.8 113 444-573 133-247 (435)
127 KOG1885 Lysyl-tRNA synthetase 95.3 0.014 3.1E-07 65.6 3.9 115 444-575 224-342 (560)
128 cd00769 PheRS_beta_core Phenyl 94.9 0.016 3.4E-07 59.9 2.5 125 449-577 3-139 (198)
129 PLN02788 phenylalanine-tRNA sy 94.0 0.079 1.7E-06 60.2 5.7 99 449-554 71-180 (402)
130 PRK07080 hypothetical protein; 92.3 0.41 8.8E-06 52.4 7.6 154 433-590 32-222 (317)
131 KOG0554 Asparaginyl-tRNA synth 91.2 0.093 2E-06 58.3 1.4 109 439-554 126-239 (446)
132 TIGR00471 pheT_arch phenylalan 91.0 0.22 4.7E-06 59.6 4.3 127 448-578 364-494 (551)
133 COG2024 Phenylalanyl-tRNA synt 90.6 0.26 5.7E-06 54.3 4.1 84 498-584 181-268 (536)
134 PRK06253 O-phosphoseryl-tRNA s 89.0 0.38 8.3E-06 56.0 4.0 83 497-583 181-268 (529)
135 KOG0556 Aspartyl-tRNA syntheta 87.4 0.3 6.6E-06 54.3 1.8 112 446-572 229-342 (533)
136 PLN02265 probable phenylalanyl 85.7 0.62 1.4E-05 56.3 3.5 125 448-578 399-531 (597)
137 TIGR00469 pheS_mito phenylalan 84.6 0.95 2.1E-05 52.2 4.0 100 450-553 46-165 (460)
138 PF00221 Lyase_aromatic: Aroma 82.1 0.51 1.1E-05 55.2 0.7 75 10-86 1-84 (473)
139 TIGR01225 hutH histidine ammon 81.0 0.74 1.6E-05 54.2 1.4 75 10-86 1-84 (506)
140 PRK09367 histidine ammonia-lya 76.9 1.4 3E-05 52.0 2.0 78 9-89 3-89 (500)
141 TIGR00472 pheT_bact phenylalan 72.0 3.1 6.7E-05 52.3 3.5 122 453-578 498-632 (798)
142 TIGR03832 Tyr_2_3_mutase tyros 66.3 2.7 5.8E-05 49.6 1.2 73 12-86 1-82 (507)
143 PRK00629 pheT phenylalanyl-tRN 61.1 3 6.5E-05 52.3 0.4 84 448-533 489-576 (791)
144 COG2986 HutH Histidine ammonia 54.8 5.5 0.00012 46.0 1.1 80 8-89 2-86 (498)
145 CHL00192 syfB phenylalanyl-tRN 52.2 4.4 9.4E-05 50.1 -0.3 78 448-532 400-481 (704)
146 TIGR01226 phe_am_lyase phenyla 51.1 4.6 0.0001 49.1 -0.3 60 8-69 31-96 (680)
147 COG0442 ProS Prolyl-tRNA synth 49.3 10 0.00022 44.8 2.1 93 760-852 284-389 (500)
148 cd00332 PAL-HAL Phenylalanine 48.5 8.2 0.00018 44.9 1.2 69 18-86 2-79 (444)
149 PLN02457 phenylalanine ammonia 45.2 13 0.00027 45.6 2.1 77 8-86 44-130 (706)
150 PF04914 DltD_C: DltD C-termin 41.9 26 0.00056 33.8 3.3 70 406-475 30-101 (130)
151 COG0072 PheT Phenylalanyl-tRNA 40.4 11 0.00024 46.1 0.7 88 447-535 352-443 (650)
152 COG4038 Predicted membrane pro 34.5 16 0.00034 31.3 0.4 32 705-737 8-47 (87)
153 KOG0222 Phenylalanine and hist 33.2 19 0.0004 41.6 0.9 38 10-49 66-103 (715)
154 COG3705 HisZ ATP phosphoribosy 32.9 13 0.00029 42.3 -0.3 53 692-744 323-383 (390)
155 KOG0555 Asparaginyl-tRNA synth 25.0 30 0.00064 39.1 0.7 97 445-552 243-340 (545)
156 cd00669 Asp_Lys_Asn_RS_core As 24.3 33 0.00071 37.3 0.8 32 717-748 223-254 (269)
157 cd00670 Gly_His_Pro_Ser_Thr_tR 21.8 90 0.002 32.5 3.6 36 711-746 190-234 (235)
158 cd00777 AspRS_core Asp tRNA sy 20.0 44 0.00095 36.5 0.8 20 729-748 246-265 (280)
No 1
>PLN02972 Histidyl-tRNA synthetase
Probab=100.00 E-value=8.7e-113 Score=997.35 Aligned_cols=735 Identities=69% Similarity=1.055 Sum_probs=649.2
Q ss_pred CCCceEEEecCCCCCCCccceeeeecCceeEEecchhhhhhhcCCCCCCCCCcceeeccCCcccchhhhHHHHHHHHHHH
Q 003041 4 RGSAAVITVGGKGSSLNSSSVYAISNGLAQVRVDSSALDRLSSTLPNQNPPPVTKFQIPIPKTLTLEESRAFLTVLLNKL 83 (854)
Q Consensus 4 ~~~~~~v~l~g~g~~lt~~~vygi~tG~a~~~i~~~~~~~lq~~~~~~~~~~~~~~h~gvg~~l~~~~vRa~m~~rln~l 83 (854)
+++.++|||||||++||+..||.++||.++++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------- 35 (763)
T PLN02972 2 AAESAVITLGGKGSSLTSASVYALATGVAQPRID---------------------------------------------- 35 (763)
T ss_pred CcccceEEecCCCccccHHHHHHHHhcccccccc----------------------------------------------
Confidence 4667789999999999999999999999988776
Q ss_pred hcCCCcchhHHHHHHHhhcccccceecceeeecccceeeeeccCcchhhhchhhhccccchhhhHHHHHHHhhccccccC
Q 003041 84 LLGSSIRTAFAVLISETLNSQTETLQFESVDVTEDERIVLEKLSLPSVLSGICAVLDHKSSALSAIIDAVAALSCEASGA 163 (854)
Q Consensus 84 ~~G~SG~~~~~~l~~~~~~~g~~~~~~~p~~l~~ke~~~l~~~~~~~~~~a~~~l~~~~a~~l~~~a~~~~Als~eal~g 163 (854)
++. ..|.+..|.++|+||||.+|
T Consensus 36 -------------------------------------------~~~--------------~~~~~~~~~~~~~~~~~~~~ 58 (763)
T PLN02972 36 -------------------------------------------SSA--------------TCLARVVDAVAALSCEAAKA 58 (763)
T ss_pred -------------------------------------------cch--------------hHHHHHHHHHHhcccHhhhc
Confidence 111 45678899999999999999
Q ss_pred cccccccccCCCCccccccccccccceeeecCceeeeeeccccccccccccchHHHHHHHhhccceEEecccceecc---
Q 003041 164 DVAAFNSIDSGDGFTAKEEIGVAGDLKVLLNGSKLVGKMKSEDILEIPKINGKLREVVKSVHSSTRVELNSSVKVGI--- 240 (854)
Q Consensus 164 ~~~~f~~~~~~~~rph~gq~~~A~~~r~lL~gs~~~~~~D~yslRc~Pqv~Ga~~d~l~~~~~~~~~ElNs~~~~~~--- 240 (854)
+.++||...+++.-..+..++||..|+.||.||++++..++-+|-.+|.|||..|++++.++..+.+||||++..++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (763)
T PLN02972 59 DVAAFDVLDSGDGLSDKDEADVAGDMKVLLNGSKLVGKAQAEVFSKIPKINGIFREAVKAVHAVVRIELNSPVKLGKRDA 138 (763)
T ss_pred chhhccCCCCCCCcccccccchhccceeeecccchhhhhHHHHHhcCcccchHHHHHHHHHHHHHHHHhcCcccccccCc
Confidence 99999988888999999999999999999999999998899999999999999999999999999999999998755
Q ss_pred ccchhhHhhhHHHHHHHHHhhcccchhhhcccccccCcccccccccccCCCchhhhh-HHHHhhhccchhhHHHHHHHhh
Q 003041 241 SGTAKAVGANALALAAAIHNLGESSLYRAKMNLNSINSDGLRSLFEKDCSSGDNLRK-TYKLVLDANFEEDYVKFLHEAN 319 (854)
Q Consensus 241 ~~~~~~~~~~~d~l~~a~~~l~~~serr~~~l~~~~~~~gLp~fL~~~~~~~~~l~~-~~~~~~s~~~~edh~s~~~~~~ 319 (854)
+..|.. |+.|+..||.+|..|..++++.+.+..|+..|+++. ..+++.. +++..+ .||.+|+.+.++
T Consensus 139 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~ 206 (763)
T PLN02972 139 IQTGEG-------LARAVQALGKLSVARAKLCLEVIGDEELRKKLTSGV-VLDNLYGLLLKVSI----EEDAVSFLHGVN 206 (763)
T ss_pred chhhHH-------HHHHHHHHHHHHHHHHHHHHHHhccHHHHHhhhcce-eehhhhhhhhheee----cchHHHHHHHHH
Confidence 222322 678999999999999999999999999999999985 3444444 444443 899999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhhccccccccceecCCcc---eecchhhhhhccccccCcchhhHHHHHHHhcc--ccchh-H
Q 003041 320 VLLGMVWKIVTWEAVLAFVALEGGELLGEKVNGGDV---VVDKKSEKKKKKAVLGKGTGVIVQLIKDRLQS--KSLGI-L 393 (854)
Q Consensus 320 ~~~~~~~~ila~E~~~a~~al~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--~~~~~-~ 393 (854)
..|..+|+|+|||..+|+.+||+.|+..++++..++ +.+|++||+|||+++|+++..+..+....... |.... |
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (763)
T PLN02972 207 NLLGIVWDIVAWEAAAAFAVLEGGELIEKPQAEAENEAGKSDKKDKKSKKKKVLGKGTSAVLQLIKDRVTNGGGVSSDSL 286 (763)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccchhhhhhccccchhhhhhhhhccccccchhhhhhhhcccccccccchhHH
Confidence 999999999999999999999999999877655543 34667888999999999999999988866553 22233 3
Q ss_pred ---hhhhhcccccCCCCCCchHHHHHHHHHHHhhcccCCCCCCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcc
Q 003041 394 ---EKWSEDLFSFFDPRDPEFDGLLTKIREIVESNESRRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTP 470 (854)
Q Consensus 394 ---~~~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP 470 (854)
..+...+..++.|.+|...+...++.++...++.++.+++|+||+||+|.++..+++++++++++|++|||++|+||
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~PkGtrD~lP~e~~~re~I~~~L~~vFk~hGy~eI~TP 366 (763)
T PLN02972 287 QVLAEWATQLLLLFDPKCPGFDSLVDKVKEIVESNEVRRLPKIPKGTRDFAKEQMAIREKAFSIITSVFKRHGATALDTP 366 (763)
T ss_pred HHHHhhccchhhcccccccchhHHHHHHHHhhcccchhcccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCEEccCC
Confidence 23333556678899998888888877765554557888999999999999999999999999999999999999999
Q ss_pred hhHhHHhhhhccCCCchhhhhhhhccCCceeeecccccchhhhhhhccccchhhhhhhhhhcccCCCCcccccccccccc
Q 003041 471 VFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFD 550 (854)
Q Consensus 471 ~le~~e~~~~~~g~~~k~~y~~~D~~G~~l~LRpDlT~~~aR~~a~~~~~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~e 550 (854)
+||+.|+|.+++|++.++||+|.|++|+.++||||+|+|+||++++|...|+|+||+|+|||+|+|++||+|||+|||||
T Consensus 367 vfE~~Ell~~k~Ged~k~mY~f~D~gGr~LaLRPDlTvPiAR~vA~n~~~p~KrYyiG~VFR~e~pqkGR~REF~Q~G~E 446 (763)
T PLN02972 367 VFELRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGITSFKRYQIAKVYRRDNPSKGRYREFYQCDFD 446 (763)
T ss_pred cccchHHhhcccCcchhheEEEECCCCCEEEeCCCChHHHHHHHHhCCCCcceEEEeccEEecCCCCCCCCccceEEeEE
Confidence 99999999888898888999999999999999999999999999998877999999999999999999999999999999
Q ss_pred ccccccccCCChhhHHHHHHHhhhcCCCcceeeechhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHHHHHHHhc
Q 003041 551 IAGQYERMGPDFEVVKILTELLNELDIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEK 630 (854)
Q Consensus 551 iig~~~~~~aDaEvI~l~~eil~~Lgl~~~~i~Lnh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~ 630 (854)
|||..+++.+|+|||.++.++|+.||+++|.|+|||+++++.+++.||+++++++.+++.++++++..|++++++|.+.+
T Consensus 447 IIG~~~~~~aDAEVI~La~E~L~~LGi~df~I~INh~~iL~~ILe~lgi~~e~~~~v~~aIdkldk~~le~vk~eL~~~~ 526 (763)
T PLN02972 447 IAGVYEPMGPDFEIIKVLTELLDELDIGTYEVKLNHRKLLDGMLEICGVPPEKFRTICSSIDKLDKQSFEQVKKEMVEEK 526 (763)
T ss_pred EEcCCCcchhhHHHHHHHHHHHHhCCCCceEEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhhc
Confidence 99976666689999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CcceeecccccccccccCChHHHHHHHhhhcchhhcccccccccchHHHHHHHhhhccccceeeeeccccccCccccc--
Q 003041 631 GLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG-- 708 (854)
Q Consensus 631 gl~~~~~~~L~~l~~~~g~~~~vl~~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~gv~~~I~~D~sl~rgl~YYtG-- 708 (854)
|++.+.++.|.+|+.++|++.++++++......+..+....+++++|+.++++|+.+|+..+|.|||+++||++||||
T Consensus 527 gLs~e~~~~L~~L~~L~G~~~evLd~L~~~~~~l~~~~~~~~aL~eL~~L~~~L~~~gv~~~I~fDlsLvRGLDYYTGiV 606 (763)
T PLN02972 527 GLSNETADKIGNFVKERGPPLELLSKLRQEGSEFLGNASSRAALDELEIMFKALEKSKAIGKIVFDLSLARGLDYYTGVI 606 (763)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhHhhccChHHHHHHHHHHHHHHHHHhcCCCccEEECCcccCCCcccCceE
Confidence 999999999999999999988899988754334455555678999999999999999998889999999999999999
Q ss_pred ---------ccccccCCcccccccccCCcccCccceehhhHHHHHHHHHHHHhhhhccccchhhhhhhhcCC-CccchHH
Q 003041 709 ---------VGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAE 778 (854)
Q Consensus 709 ---------~~~Ia~GGRYD~Li~~fg~~~~pAvGfsigieRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~ 778 (854)
.++|++|||||+|++.|++++.|||||+|++|||+.++.+.+......|.+.++||+|++.++ .+.++++
T Consensus 607 FE~~~~g~~~gsIagGGRYD~Lv~~FgG~~vPAVGFSiGIERL~~~L~~~~~~~~~~~~~~~~dVlV~s~g~~~l~~alk 686 (763)
T PLN02972 607 YEAVFKGAQVGSIAAGGRYDNLVGMFSGKQVPAVGVSLGIERVFAIMEQQEEEKSQVIRPTETEVLVSIIGDDKLALAAE 686 (763)
T ss_pred EEEEEcCCccceeeecCCchhHHHhcCCCCCCEEEEEecHHHHHHHHHHcccCCCCCCCCCCCcEEEEEeCHHHHHHHHH
Confidence 158999999999999998889999999999999999987643211112445668999999886 6788999
Q ss_pred HHHHHhhhccceeeeehhhHHHHHhhhhcCCCceEEEeecccccccceeeeccccchhhhcchhhhHHHHHHhhc
Q 003041 779 LVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 853 (854)
Q Consensus 779 la~~Lr~~GI~ael~~~~~l~k~l~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~ 853 (854)
++++||++||+|++....++++++++|++.|++|+||+|++|+++|+|+|||+.+++|.+|++++++++|+++|.
T Consensus 687 ia~~LR~aGI~aE~~~~~kl~kq~~~A~k~gi~~vVIIGe~E~~~g~VkVKnL~tgeq~~V~~delv~~l~~~l~ 761 (763)
T PLN02972 687 LVSELWNAGIKAEYKVSTRKAKHLKRAKESGIPWMVLVGEKELSKGFVKLKNLEAGVEEEVDRTCFVQELKAELL 761 (763)
T ss_pred HHHHHHHCCCEEEEeCCCCHHHHHHHHHHCCCCEEEEECchHHhCCeEEEEECCCCcceEeeHHHHHHHHHHHhc
Confidence 999999999999987667799999999999999999999999999999999999999999999999999998874
No 2
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-87 Score=714.49 Aligned_cols=425 Identities=61% Similarity=0.962 Sum_probs=401.0
Q ss_pred CCCCCCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhhhccCCceeeecccc
Q 003041 428 RRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLT 507 (854)
Q Consensus 428 ~~~~~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D~~G~~l~LRpDlT 507 (854)
++..++|+||+||.|.++.+|+++++++.++|++||++.|+||+||-.+++.++||++++.+|.|.|++|+.++||||+|
T Consensus 57 k~~lKtPKGTrD~~p~qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGEdskLiYdlkDQGGEl~SLRYDLT 136 (518)
T KOG1936|consen 57 KFSLKTPKGTRDFSPEQMALREKIFSTIKEVFKRHGAETIDTPVFELKEILTGKYGEDSKLIYDLKDQGGELCSLRYDLT 136 (518)
T ss_pred ceeecCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHHhhhcccccceeEehhhcCCcEEEeecccc
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhccccchhhhhhhhhhcccCC--CCccccccccccccccccccccCCChhhHHHHHHHhhhcCCCcceeeec
Q 003041 508 VPFARYVAMNGLTSFKRHQIAKVYRRDNP--SKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIGDYEIKLN 585 (854)
Q Consensus 508 ~~~aR~~a~~~~~p~K~y~ig~VfR~e~p--~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~Lgl~~~~i~Ln 585 (854)
+|||||+|+|+...+|+|+|++|||+++| .+||+||||||||||.|..+++.+|+||++++.|+|+.|++++|.|++|
T Consensus 137 VPfARylAmNki~sikRy~iAkVyRRd~P~mtrGR~REFYQcDFDIAG~~d~M~pdaE~lkiv~e~L~~l~Igd~~iKvN 216 (518)
T KOG1936|consen 137 VPFARYLAMNKITSIKRYHIAKVYRRDQPAMTRGRYREFYQCDFDIAGQFDPMIPDAECLKIVVEILSRLGIGDYGIKVN 216 (518)
T ss_pred cHHHHHHHHcccccceeeeEEEEEeccCchhhchhhhhhhccCccccccCCCCCchHHHHHHHHHHHhhcCccceEEEec
Confidence 99999999999999999999999999999 6899999999999999988999999999999999999999999999999
Q ss_pred hhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHHHHHHHhcCcceeecccccccccccCChHHHHHHHhhhcchhh
Q 003041 586 HRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFL 665 (854)
Q Consensus 586 h~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~gl~~~~~~~L~~l~~~~g~~~~vl~~l~~~~~~~~ 665 (854)
|+.++++++..||+|++.++.+|+.+||+||.+|+++++|+..++|++++.+++|.+++.+.|. .++++++.+. +.+.
T Consensus 217 hRkiLdgmf~v~GVp~~~frtICSsIDKLdK~pwedVkkEmv~eKGlsee~ad~igeyv~~~g~-~eL~e~l~~d-~~l~ 294 (518)
T KOG1936|consen 217 HRKILDGMFAVCGVPEDKFRTICSSIDKLDKMPWEDVKKEMVFEKGLSEEAADRIGEYVSLKGL-DELLEKLIAD-PKLS 294 (518)
T ss_pred HHHHHHHHHHHhCCCHHHhhhHHHhhhhhhcCCHHHHHHHHHHhcCCCHHHHHHHHHHhhhccH-HHHHHHHhcC-Cccc
Confidence 9999999999999999999999999999999999999999999999999999999999999888 4888888765 5677
Q ss_pred cccccccccchHHHHHHHhhhccccceeeeeccccccCccccc-----------------------------ccccccCC
Q 003041 666 ENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG-----------------------------VGSIAAGG 716 (854)
Q Consensus 666 ~~~~~~~al~~L~~l~~~l~~~gv~~~I~~D~sl~rgl~YYtG-----------------------------~~~Ia~GG 716 (854)
+|+.+.+++++|+.+++|++.+|+..+|+||+|++||+||||| .|++|+||
T Consensus 295 ~n~~a~eal~dlk~Lf~y~~~fg~s~~isfDlSLARGLDYYTGvIyEav~~~~~~~~~a~~~~~~~~~e~~~vGSvaaGG 374 (518)
T KOG1936|consen 295 QNEAAKEALADLKQLFEYLEIFGISERISFDLSLARGLDYYTGVIYEAVLRGLRLICPAGRYDQAGSTEPGGVGSVAAGG 374 (518)
T ss_pred ccHHHHHHHHHHHHHHHHHHHcCCcceEEeehHHhccchhhhceeeeeeeccccccCcchhhhccccccCCCccccccCc
Confidence 8888889999999999999999999999999999999999999 16899999
Q ss_pred cccccccccCCc--ccCccceehhhHHHHHHHHHHHHhhhhccccchhhhhhhhcCC-CccchHHHHHHHhhhccceeee
Q 003041 717 RYDNLIGMFGTK--QVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYM 793 (854)
Q Consensus 717 RYD~Li~~fg~~--~~pAvGfsigieRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~ 793 (854)
|||+|+.+|+++ .+|+||+|+|+|||+.+|.+.........+++.++|+|+..+. ...+++++++.||.+||.+|+.
T Consensus 375 RYDnLv~mf~~k~~~vPcvG~S~GVeRiFsile~r~~~~~~~iR~t~t~V~V~~~~k~~l~eR~k~v~~Lw~agI~aE~~ 454 (518)
T KOG1936|consen 375 RYDNLVGMFDKKGDKVPCVGQSVGVERIFSILEQRAATVATKIRTTETQVYVAAAGKNLLFERLKVVNALWDAGIKAEYL 454 (518)
T ss_pred chhhHHHHhccccCcCCccceeehHhHHHHHHHHHHHhhhhccccCceEEEEEecCCchHHHHHHHHHHHHhcCcchhhh
Confidence 999999999864 6899999999999999998765443334566788999999887 7789999999999999999999
Q ss_pred eh--hhHHHHHhhhhcCCCceEEEeecccccccceeeeccccchhhhcchhhhHHHHHHhhcC
Q 003041 794 VH--KKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 854 (854)
Q Consensus 794 ~~--~~l~k~l~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~~ 854 (854)
+. +++.++++||.+.||||+||+|++|+++|.|+||++.+++++.+++++++..|++.+.|
T Consensus 455 yk~~~~~~~q~~~~e~~~ip~~vi~Ge~El~~G~V~vk~~~~re~~~v~~e~~v~~l~~~l~~ 517 (518)
T KOG1936|consen 455 YKANPKLLKQFQYAEEAGIPLAVILGEEELADGSVKVKNVGTREEVLVKREQFVSELKDLLSQ 517 (518)
T ss_pred hhcCccHHHHHHHHHhcCCCeEEEechhhhcCCeEEEEecccccceeccHHHHHHHHHHHhcC
Confidence 84 66899999999999999999999999999999999999999999999999999998876
No 3
>COG2986 HutH Histidine ammonia-lyase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-88 Score=738.43 Aligned_cols=309 Identities=25% Similarity=0.241 Sum_probs=285.8
Q ss_pred cceeeeecC---ceeEEecchhhhhhhcCCCCCCCCCcceee-ccCCcccchhhhHHHHHHHHHHHhcCCCcch-hHHHH
Q 003041 22 SSVYAISNG---LAQVRVDSSALDRLSSTLPNQNPPPVTKFQ-IPIPKTLTLEESRAFLTVLLNKLLLGSSIRT-AFAVL 96 (854)
Q Consensus 22 ~~vygi~tG---~a~~~i~~~~~~~lq~~~~~~~~~~~~~~h-~gvg~~l~~~~vRa~m~~rln~l~~G~SG~~-~~~~l 96 (854)
++||||||| +++|+|++++++.||+|++ +|| ||||+|||.++|||||++|+|+|++||||++ .+++.
T Consensus 51 ~~vYGInTGfG~l~~v~I~~~d~~~Lqrnli--------~SHa~GvG~~l~~~~vRaim~~r~nsLa~G~SGvr~~vi~~ 122 (498)
T COG2986 51 APVYGINTGFGKLADVRIAAADLATLQRNLI--------LSHACGVGEPLPEEIVRAIMALRLNSLARGYSGVRLEVIEL 122 (498)
T ss_pred CeeeeeccccccccccccCHHHHHHHHHhhH--------HHhhccCCCCCcHHHHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 478999999 7999999999999999999 999 9999999999999999999999999999955 33333
Q ss_pred ---------HHHhhcccccce--------ec----------------------------ceeeecccceeeeeccCcchh
Q 003041 97 ---------ISETLNSQTETL--------QF----------------------------ESVDVTEDERIVLEKLSLPSV 131 (854)
Q Consensus 97 ---------~~~~~~~g~~~~--------~~----------------------------~p~~l~~ke~~~l~~~~~~~~ 131 (854)
+|.+|++||||+ |+ +|+.|.+|||.+|.| + |++
T Consensus 123 LlalLN~gv~P~iP~~GSVGASGDLapLaHmal~liGeG~a~~~G~~~~a~~AL~~aglePi~L~aKEGLALiN-G-Tq~ 200 (498)
T COG2986 123 LLALLNKGVIPVIPSKGSVGASGDLAPLAHMALALIGEGEAFYQGERLSAAEALAKAGLEPVTLAAKEGLALIN-G-TQV 200 (498)
T ss_pred HHHHHhCCCeecCCCCCCCcccccccHHHHHHHHHhcCceeeeCCEeccHHHHHHHcCCCCcccccccceeecc-c-cHH
Confidence 267899999984 32 699999999744433 3 579
Q ss_pred hhchhhhccccchhhhHHHHHHHhhccccccCcccccccccCCCCccccccccccccceeeecCceeeeee------ccc
Q 003041 132 LSGICAVLDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDGFTAKEEIGVAGDLKVLLNGSKLVGKM------KSE 205 (854)
Q Consensus 132 ~~a~~~l~~~~a~~l~~~a~~~~Als~eal~g~~~~f~~~~~~~~rph~gq~~~A~~~r~lL~gs~~~~~~------D~y 205 (854)
|||+++++++||++|++||++++|||+|+++|+.+||||++ |.+|||+||+++|++||++|+||+++.+| |||
T Consensus 201 ~tg~a~lal~~Ae~L~~~A~~~~ALs~Eal~g~~~~fd~~i-~~~Rp~~Gq~~~a~~lR~lLagS~~~~~~~~~rvQDpy 279 (498)
T COG2986 201 STALALLALFRAERLLRTALIAGALSTEALMGSDAPFDERI-HALRPHPGQIDVAAALRALLAGSAIRRSHLEQRVQDPY 279 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCCccccchHH-HHhCCCccHHHHHHHHHHHhccCcchhccccccccCcc
Confidence 99999999999999999999999999999999999999999 59999999999999999999999999875 999
Q ss_pred cccccccccchHHHHHHHhhccceEEeccccee----cc-----ccc---hhhHhhhHHHHHHHHHhhcccchhhhcccc
Q 003041 206 DILEIPKINGKLREVVKSVHSSTRVELNSSVKV----GI-----SGT---AKAVGANALALAAAIHNLGESSLYRAKMNL 273 (854)
Q Consensus 206 slRc~Pqv~Ga~~d~l~~~~~~~~~ElNs~~~~----~~-----~~~---~~~~~~~~d~l~~a~~~l~~~serr~~~l~ 273 (854)
||||+|||||+++|+++|+++++++|+||+||. ++ ||| |+++++++|+|++|++|+|++||||+++|+
T Consensus 280 SlRc~PQV~GA~~d~l~~~~~~le~ElNsvtDNPlv~~~~~~ViSgGNFhg~pva~A~D~L~iAlae~a~iseRRi~~Lv 359 (498)
T COG2986 280 SLRCQPQVHGACLDALRQAARVLEIELNSVTDNPLVFGDEEEVISGGNFHGEPVALAADFLAIALAELAAISERRIARLV 359 (498)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhhhhcCCCCcccCCCCccccCCCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999983 32 666 888999999999999999999999999999
Q ss_pred cccCcccccccccc--c---------------CCCchhhhh---HHHHhhhccchhhHHHHHHHhhhhh----hhHHHHH
Q 003041 274 NSINSDGLRSLFEK--D---------------CSSGDNLRK---TYKLVLDANFEEDYVKFLHEANVLL----GMVWKIV 329 (854)
Q Consensus 274 ~~~~~~gLp~fL~~--~---------------~~~~~~l~~---~~~~~~s~~~~edh~s~~~~~~~~~----~~~~~il 329 (854)
||.+| |||+||++ | ++|||+|+| +||+|||+| |||||||++.+++|+ +|+++|+
T Consensus 360 np~~s-gLP~FL~~~~G~nsGfMI~Q~taAAL~sENk~LA~PaSvDs~ptSan-qEDhvSm~~~aa~k~~~iien~~~Il 437 (498)
T COG2986 360 NPALS-GLPAFLVPKPGLNSGFMIAQYTAAALVSENKVLAHPASVDSIPTSAN-QEDHVSMATHAARKLLEIIENLRTIL 437 (498)
T ss_pred Cchhc-cCCccccCCCCcccchHHHHHHHHHHHHHHHhhcCCcccCCccccCc-ccchhcchHHHHHHHHHHHHHHHHHH
Confidence 99999 99999998 2 799999999 999999999 999999999999997 7899999
Q ss_pred HHHHHHHHhhcccc
Q 003041 330 TWEAVLAFVALEGG 343 (854)
Q Consensus 330 a~E~~~a~~al~~~ 343 (854)
|||+|+|+||+|++
T Consensus 438 aiE~l~AaQa~dlr 451 (498)
T COG2986 438 AIELLAAAQAVDLR 451 (498)
T ss_pred HHHHHHHHhHhhhc
Confidence 99999999999998
No 4
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.9e-76 Score=655.40 Aligned_cols=405 Identities=36% Similarity=0.541 Sum_probs=352.6
Q ss_pred CCCCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC----chhhhhhhhccCCceeeecc
Q 003041 430 LPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED----SKLIYDLADQGGELCSLRYD 505 (854)
Q Consensus 430 ~~~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~----~k~~y~~~D~~G~~l~LRpD 505 (854)
..+.|+||+||+|.++..|++++++++++|++|||.+|.||+||+.++|.+++|+. .|+||.|.|++|+.++||||
T Consensus 3 ~~~~prG~~D~lp~d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkggr~laLRpe 82 (429)
T COG0124 3 KIQRPRGTRDFLPEDMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKGGRSLALRPE 82 (429)
T ss_pred CccCCCCccccChHHHHHHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeCCCCEEEeccc
Confidence 46789999999999999999999999999999999999999999999999888976 48999999999999999999
Q ss_pred cccchhhhhhhcc---ccchhhhhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhhhcCCCccee
Q 003041 506 LTVPFARYVAMNG---LTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIGDYEI 582 (854)
Q Consensus 506 lT~~~aR~~a~~~---~~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~Lgl~~~~i 582 (854)
+|+|++|++++|. ..|+|+||+|+|||||+||+||+|||||||+|+||..+ +.+|||+|.++.++|++||+++|+|
T Consensus 83 ~Tapv~R~~~en~~~~~~p~k~yy~g~vfRyErPQ~GR~RqF~Q~g~E~iG~~~-~~~DAEvi~l~~~~l~~lGi~~~~l 161 (429)
T COG0124 83 LTAPVARAVAENKLDLPKPLKLYYFGPVFRYERPQKGRYRQFYQFGVEVIGSDS-PDADAEVIALAVEILEALGIGGFTL 161 (429)
T ss_pred CcHHHHHHHHhccccccCCeeEEEecceecCCCCCCCCceeeEEcCeEEeCCCC-cccCHHHHHHHHHHHHHcCCCcEEE
Confidence 9999999999874 35899999999999999999999999999999999865 5799999999999999999999999
Q ss_pred eechhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHHHHHHHhcCcceeecccccccccccCChHHHHHHHhhhcc
Q 003041 583 KLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGS 662 (854)
Q Consensus 583 ~Lnh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~gl~~~~~~~L~~l~~~~g~~~~vl~~l~~~~~ 662 (854)
+|||+++++.+++++|+ +++..+++.|++++|. +..+|.+ .+......+.|..|....+...++++.+..
T Consensus 162 ~iN~~g~l~~~~~~~gi--~~~~~l~~~ldk~~k~----~~~~L~e-~~~~r~~~n~lr~ld~k~~~~~~~~~~ap~--- 231 (429)
T COG0124 162 EINSRGILEGRLEYLGI--DQREALLRYLDKLDKI----GKLELDE-DSKRRLKTNPLRVLDSKKDSDQELLKNAPE--- 231 (429)
T ss_pred EEcCcccHHHHHHhhcc--hhHHHHHHHHhhhhhH----HHHHhhh-hhhhhhhhchHHHHHhccchHHHHHhccHH---
Confidence 99999999999999999 6788999999988765 2223322 222233455555555555544444443321
Q ss_pred hhhcccccccccchHHHHHHHhhhccccceeeeeccccccCccccc------------ccccccCCcccccccccCCccc
Q 003041 663 LFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG------------VGSIAAGGRYDNLIGMFGTKQV 730 (854)
Q Consensus 663 ~~~~~~~~~~al~~L~~l~~~l~~~gv~~~I~~D~sl~rgl~YYtG------------~~~Ia~GGRYD~Li~~fg~~~~ 730 (854)
+.. ....+++++++++.++|+.+|+ ++.+||+++||+||||| .++||+|||||+|++.||++++
T Consensus 232 -i~~-~~~~e~~~~~~~v~~~L~~~g~--~~~id~~lvRGLDYYtg~VFE~~~~~~~~~~sI~gGGRYD~Lv~~~gG~~~ 307 (429)
T COG0124 232 -LLD-YLDEESLEHLEELLALLDALGI--SYEIDPSLVRGLDYYTGTVFEAVTDGLGAQGSVCGGGRYDGLVEEFGGKPT 307 (429)
T ss_pred -hhh-hccHHHHHHHHHHHHHHHHcCC--CEEEccceecchhhccceEEEEEEcCCccccceecCccchHHHHHhCCCCC
Confidence 111 1123688999999999999994 59999999999999999 3589999999999999999999
Q ss_pred CccceehhhHHHHHHHHHHHHhhhhccccchhhhhhhhcCCC-ccchHHHHHHHhhhccceeeeehh-hHHHHHhhhhcC
Q 003041 731 PAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDK-LPLAAELVSELWNAKVKAEYMVHK-KVMKLIDRARES 808 (854)
Q Consensus 731 pAvGfsigieRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~~-~~~a~~la~~Lr~~GI~ael~~~~-~l~k~l~~A~~~ 808 (854)
||||||+|+|||+.++.+.+. ..+.+.+++|+|+++++. ..+++.+++.||++||++++++.. ++++++++|++.
T Consensus 308 pavGFaiGveRl~~~l~~~~~---~~~~~~~~~v~v~~~~~~~~~~a~~la~~LR~~g~~~~~~~~~r~~k~q~k~A~~~ 384 (429)
T COG0124 308 PAVGFAIGVERLILALEEEGK---EDPVETRVDVYVVPLGEDAEPEALKLAQKLRAAGISVEVDYSGRKLKKQFKYADKL 384 (429)
T ss_pred CceeEehHHHHHHHHHHHcCC---CCCcCCCCCEEEEEcCchhHHHHHHHHHHHHHcCCcEEEEeccccHHHHHHHHHHC
Confidence 999999999999999987543 234567899999999984 478999999999999999999964 499999999999
Q ss_pred CCceEEEeecccccccceeeeccccchhhhcchhhhHHHHHHhh
Q 003041 809 KIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 852 (854)
Q Consensus 809 gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l 852 (854)
|++|+||+|++|+++|+|+|||+.+++|..++++++++.++..+
T Consensus 385 g~~~~viiGe~E~~~g~v~vKdl~t~eq~~v~~~~~~~~~~~~~ 428 (429)
T COG0124 385 GARFAVILGEDELANGVVTVKDLATGEQEEVPLDELVEELKELL 428 (429)
T ss_pred CCCEEEEEcchHHhcCCEEEeeCCCCccceecHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999988654
No 5
>TIGR01225 hutH histidine ammonia-lyase. This enzyme deaminates histidine to urocanic acid, the first step in histidine degradation. It is closely related to phenylalanine ammonia-lyase.
Probab=100.00 E-value=5.6e-77 Score=676.83 Aligned_cols=309 Identities=25% Similarity=0.269 Sum_probs=281.0
Q ss_pred cceeeeecC---ceeEEecchhhhhhhcCCCCCCCCCcceee-ccCCcccchhhhHHHHHHHHHHHhcCCCcch-hHHHH
Q 003041 22 SSVYAISNG---LAQVRVDSSALDRLSSTLPNQNPPPVTKFQ-IPIPKTLTLEESRAFLTVLLNKLLLGSSIRT-AFAVL 96 (854)
Q Consensus 22 ~~vygi~tG---~a~~~i~~~~~~~lq~~~~~~~~~~~~~~h-~gvg~~l~~~~vRa~m~~rln~l~~G~SG~~-~~~~l 96 (854)
.+||||||| +++++|++++++++|+|++ +|| ||||++||+++|||||++|||+|++|+||++ .+++.
T Consensus 48 ~~iYGvnTGfG~~~d~~i~~~~~~~lq~nLi--------~sha~GvG~~l~~~~vRa~m~~Rlnsl~~G~SGvr~~vv~~ 119 (506)
T TIGR01225 48 ETVYGINTGFGKLASTRIDSEDLAELQRNLV--------RSHAAGVGDPLDEEVVRAIMALRLNSLAKGYSGVRAEVLDQ 119 (506)
T ss_pred CceeeecCCCCCccCcccCHHHHHHHHHHHH--------HHHhcCCCCCCCHHHHHHHHHHHHHHhccCCCcCCHHHHHH
Confidence 479999999 7899999999999999999 999 9999999999999999999999999999944 45555
Q ss_pred H---------HHhhcccccce--------ec----------------------------ceeeecccceeeeeccCcchh
Q 003041 97 I---------SETLNSQTETL--------QF----------------------------ESVDVTEDERIVLEKLSLPSV 131 (854)
Q Consensus 97 ~---------~~~~~~g~~~~--------~~----------------------------~p~~l~~ke~~~l~~~~~~~~ 131 (854)
| |.+|.+||||+ |+ +|++|++|||.+|. |+|++
T Consensus 120 L~~~LN~gi~P~VP~~GSvGaSGDL~pLAhial~LiGeg~v~~~G~~~~a~eaL~~~gl~P~~l~~KEgLALi--NGt~~ 197 (506)
T TIGR01225 120 LIALLNAGVHPVVPEKGSVGASGDLAPLAHMALVLMGEGKAFFKGERMPAAEALAAAGLEPVTLAAKEGLALI--NGTQA 197 (506)
T ss_pred HHHHHhCCCcccCCCCCCcCcccchHHHHHHHHHHcCCCceEECCEeecHHHHHHHcCCCCCCCCCcchhHHh--hhhHH
Confidence 4 56777777764 22 59999999964333 33789
Q ss_pred hhchhhhccccchhhhHHHHHHHhhccccccCcccccccccCCCCccccccccccccceeeecCceeeee-------ecc
Q 003041 132 LSGICAVLDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDGFTAKEEIGVAGDLKVLLNGSKLVGK-------MKS 204 (854)
Q Consensus 132 ~~a~~~l~~~~a~~l~~~a~~~~Als~eal~g~~~~f~~~~~~~~rph~gq~~~A~~~r~lL~gs~~~~~-------~D~ 204 (854)
|+|+++++++++++|++++++++|||+|+++|+++||||++ |++||||||+++|++||.+|+||+++.+ |||
T Consensus 198 ~~a~aalal~~a~~L~~~a~~~~Als~Eal~g~~~~f~~~i-~~~RphpGQ~~~A~~ir~lL~gS~l~~~~~~~~~vQD~ 276 (506)
T TIGR01225 198 MTALALLALFDAEDLLRAADITAALSVEALLGTTKPFDPDI-HEARPHRGQIDVAARFRELLAGSEITLSHRDCDRVQDA 276 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhhCHHH-HHhCCChhHHHHHHHHHHHhCCCccchhcccCCCCCCc
Confidence 99999999999999999999999999999999999999998 5999999999999999999999999743 499
Q ss_pred ccccccccccchHHHHHHHhhccceEEeccccee----c---c--ccc---hhhHhhhHHHHHHHHHhhcccchhhhccc
Q 003041 205 EDILEIPKINGKLREVVKSVHSSTRVELNSSVKV----G---I--SGT---AKAVGANALALAAAIHNLGESSLYRAKMN 272 (854)
Q Consensus 205 yslRc~Pqv~Ga~~d~l~~~~~~~~~ElNs~~~~----~---~--~~~---~~~~~~~~d~l~~a~~~l~~~serr~~~l 272 (854)
|||||+|||||+++|+++++++++++||||++|. + + ||| |+++++++|+|++|++++|++||||+++|
T Consensus 277 ySlRc~PQv~Ga~~d~l~~~~~~ve~ElNS~tDNPli~~~~~~v~~gGNFhg~~vala~D~l~iAla~la~~serr~~~L 356 (506)
T TIGR01225 277 YSLRCQPQVHGAVLDTLDQVAEVLGIELNSATDNPLVFADGGEVVSGGNFHGEPVALAADFLAIAIAELGSISERRIERL 356 (506)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeCCCCceeeCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999983 2 2 455 88889999999999999999999999999
Q ss_pred ccccCcccccccccc--c---------------CCCchhhhh---HHHHhhhccchhhHHHHHHHhhhhh----hhHHHH
Q 003041 273 LNSINSDGLRSLFEK--D---------------CSSGDNLRK---TYKLVLDANFEEDYVKFLHEANVLL----GMVWKI 328 (854)
Q Consensus 273 ~~~~~~~gLp~fL~~--~---------------~~~~~~l~~---~~~~~~s~~~~edh~s~~~~~~~~~----~~~~~i 328 (854)
+||.+| |||+||++ | ++||+.|++ +|++|||+| ||||||||+.+++++ +|+++|
T Consensus 357 ~~p~~s-gLP~fL~~~~g~~sGf~~~q~taaal~aE~r~La~PaS~~s~pts~~-~ED~vSmg~~aar~~~~~v~~~~~i 434 (506)
T TIGR01225 357 LDPNLS-GLPPFLAPDGGLNSGFMIAQYTAAALVSENKALSHPASVDSIPTSAN-QEDHVSMGAHAARKLREMIENVRRV 434 (506)
T ss_pred cCcccc-CCChhhCCCCCcccchHHHHHHHHHHHHHHHHhcCCCcCCcccccCC-cccccccHHHHHHHHHHHHHHHHHH
Confidence 999999 99999986 2 699999998 799999999 999999999999886 779999
Q ss_pred HHHHHHHHHhhcccc
Q 003041 329 VTWEAVLAFVALEGG 343 (854)
Q Consensus 329 la~E~~~a~~al~~~ 343 (854)
+|||+++|+||+|++
T Consensus 435 lAiEll~a~QAldlr 449 (506)
T TIGR01225 435 IAIELLAACQGLEFR 449 (506)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999998
No 6
>TIGR03832 Tyr_2_3_mutase tyrosine 2,3-aminomutase. Members of this protein family are tyrosine 2,3-aminomutase. It is variable from member to member as to whether the (R)-beta-Tyr or (S)-beta-Tyr is the preferred product from L-Tyr. This enzyme tends to occur in secondary metabolite biosynthesis systems, as in the production of chondramides in Chondromyces crocatus.
Probab=100.00 E-value=1.6e-75 Score=666.08 Aligned_cols=309 Identities=20% Similarity=0.217 Sum_probs=279.7
Q ss_pred cceeeeecC---ceeEEecchhhhhhhcCCCCCCCCCcceee-ccCCcccchhhhHHHHHHHHHHHhcCCCcch-hHHHH
Q 003041 22 SSVYAISNG---LAQVRVDSSALDRLSSTLPNQNPPPVTKFQ-IPIPKTLTLEESRAFLTVLLNKLLLGSSIRT-AFAVL 96 (854)
Q Consensus 22 ~~vygi~tG---~a~~~i~~~~~~~lq~~~~~~~~~~~~~~h-~gvg~~l~~~~vRa~m~~rln~l~~G~SG~~-~~~~l 96 (854)
.+||||||| +++++|++++.+++|+|++ +|| ||||+|+|+++|||||++|||+|++|+||++ .+++.
T Consensus 46 ~~iYGvnTGfG~~~d~~i~~~~~~~lQ~nLi--------~sha~GvG~~l~~~~vRa~m~iRln~l~~G~SGvr~~vve~ 117 (507)
T TIGR03832 46 VPIYGVTTGYGEMIYMLVDKEHEVELQTNLV--------RSHSAGVGPLFAEDEARAIVAARLNALAKGHSAVRPEILER 117 (507)
T ss_pred CceeeecCCCCCccCccCCHHHHHHHHHHHH--------HHHhcCCCCCCCHHHHHHHHHHHHHHhccCCCcCCHHHHHH
Confidence 579999999 7899999999999999999 999 9999999999999999999999999999944 45555
Q ss_pred H---------HHhhcccccce--------ec----------------------------ceeeecccceeeeeccCcchh
Q 003041 97 I---------SETLNSQTETL--------QF----------------------------ESVDVTEDERIVLEKLSLPSV 131 (854)
Q Consensus 97 ~---------~~~~~~g~~~~--------~~----------------------------~p~~l~~ke~~~l~~~~~~~~ 131 (854)
| |.+|.+||||+ |+ +|++|.+|||.+|.| +|++
T Consensus 118 L~~~LN~gi~PvVP~~GSvGaSGDL~pLAhial~L~Geg~v~~~G~~~~a~eaL~~~gl~Pl~L~~KEgLALiN--Gt~~ 195 (507)
T TIGR03832 118 LALYLNLGITPAIPEIGSLGASGDLAPLSHVASTLIGEGYVLRDGRPVETAQVLRERGIEPLELRFKEGLALIN--GTSA 195 (507)
T ss_pred HHHHHhCCCcccCCCCCCcCcccchHHHHHHHHHHcCCCceeECCEeecHHHHHHHcCCCCcCCCCcchhhhhc--chHH
Confidence 4 56777777764 22 599999999644333 3789
Q ss_pred hhchhhhccccchhhhHHHHHHHhhccccccCcccccccccCCC-CccccccccccccceeeecCceeee----------
Q 003041 132 LSGICAVLDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGD-GFTAKEEIGVAGDLKVLLNGSKLVG---------- 200 (854)
Q Consensus 132 ~~a~~~l~~~~a~~l~~~a~~~~Als~eal~g~~~~f~~~~~~~-~rph~gq~~~A~~~r~lL~gs~~~~---------- 200 (854)
|+|+++++++++++|+++|++++|||+|+++|+.+||||++| + +||||||+++|++||.+|+||+++.
T Consensus 196 ~~a~aala~~~a~~Ll~~a~~~~Als~Eal~g~~~~f~~~~~-~~~RphpGQ~~~A~~ir~lL~gS~l~~~~~~~~~~~~ 274 (507)
T TIGR03832 196 MTGLGALVVGRALEQVQQAEIVTALVIEALRGSTGPFLAEGH-DIARPHPGQIDSAANMRALMRGSGLTVEHADLRREVQ 274 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhcCHHHH-hhcCCCchHHHHHHHHHHHhccCccchhchhhhcccc
Confidence 999999999999999999999999999999999999999985 6 7999999999999999999998863
Q ss_pred ---------------eeccccccccccccchHHHHHHHhhccceEEeccccee----c--c--ccc---hhhHhhhHHHH
Q 003041 201 ---------------KMKSEDILEIPKINGKLREVVKSVHSSTRVELNSSVKV----G--I--SGT---AKAVGANALAL 254 (854)
Q Consensus 201 ---------------~~D~yslRc~Pqv~Ga~~d~l~~~~~~~~~ElNs~~~~----~--~--~~~---~~~~~~~~d~l 254 (854)
-||||||||+|||||+++|+|++++++|++||||++|. + + ||| |+++++++|+|
T Consensus 275 ~~~~~~~~~~~~~~~vQD~ySlRc~PQv~Ga~~d~l~~~~~~le~ElNs~~DNPli~~~~~v~sgGNFhg~~va~a~D~L 354 (507)
T TIGR03832 275 ERKEAEKSVQRTEIYMQKAYSLRAIPQVLGAVRDTLYHARTKLEIELNSANDNPLFFEGREIFHGANFHGQPVAFAMDFV 354 (507)
T ss_pred ccccccccccccCCcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcccCCCccccCCCccchhHHHHHHHH
Confidence 25999999999999999999999999999999999983 2 2 454 88889999999
Q ss_pred HHHHHhhcccchhhhcccccccCccccccccc-c--c---------------CCCchhhhh---HHHHhhhccchhhHHH
Q 003041 255 AAAIHNLGESSLYRAKMNLNSINSDGLRSLFE-K--D---------------CSSGDNLRK---TYKLVLDANFEEDYVK 313 (854)
Q Consensus 255 ~~a~~~l~~~serr~~~l~~~~~~~gLp~fL~-~--~---------------~~~~~~l~~---~~~~~~s~~~~edh~s 313 (854)
++|++++|++||||+++|+||.+|+|||+||+ + | ++||+.| + +|++|||.+ ||||||
T Consensus 355 ~iAla~la~~serR~~~L~~p~~s~gLP~fL~~~~~g~~sGfm~~Q~~aaaL~aE~r~L-~PaS~~s~pts~~-~ED~vS 432 (507)
T TIGR03832 355 TIALTQLGVLSERRLNRLLNRHLSYGLPEFLVAGDPGLHSGFAGAQYPATALVAENRTI-GPASTQSVPSNGD-NQDVVS 432 (507)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccccCCChhhCCCCCCCCccchHHHHHHHHHHHHHHHh-CCCccCCccccCC-cccccc
Confidence 99999999999999999999999999999997 3 2 6999999 8 899999999 999999
Q ss_pred HHHHhhhhh----hhHHHHHHHHHHHHHhhcccc
Q 003041 314 FLHEANVLL----GMVWKIVTWEAVLAFVALEGG 343 (854)
Q Consensus 314 ~~~~~~~~~----~~~~~ila~E~~~a~~al~~~ 343 (854)
|++.+++++ +|+++|+|||+++|+||+|++
T Consensus 433 mg~~aark~~~~v~~~~~ilAiEll~aaQAldlr 466 (507)
T TIGR03832 433 MGLIAARNARRVLSNNNKILAVELLAAAQAVDLA 466 (507)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999987 679999999999999999998
No 7
>PRK09367 histidine ammonia-lyase; Provisional
Probab=100.00 E-value=5.2e-75 Score=661.97 Aligned_cols=309 Identities=23% Similarity=0.231 Sum_probs=280.8
Q ss_pred cceeeeecC---ceeEEecchhhhhhhcCCCCCCCCCcceee-ccCCcccchhhhHHHHHHHHHHHhcCCCcch-hHHHH
Q 003041 22 SSVYAISNG---LAQVRVDSSALDRLSSTLPNQNPPPVTKFQ-IPIPKTLTLEESRAFLTVLLNKLLLGSSIRT-AFAVL 96 (854)
Q Consensus 22 ~~vygi~tG---~a~~~i~~~~~~~lq~~~~~~~~~~~~~~h-~gvg~~l~~~~vRa~m~~rln~l~~G~SG~~-~~~~l 96 (854)
.+||||||| +++++|++++.+++|+|++ +|| ||+|++||+++|||||++|||+|++|+||++ .+.+.
T Consensus 51 ~~iYGvnTG~G~~~~~~i~~~~~~~lq~nLi--------~sha~GvG~~l~~~~vRa~m~~Rln~l~~G~SGV~~ev~~~ 122 (500)
T PRK09367 51 RPVYGINTGFGKLASVRIAPEDLEQLQRNLV--------LSHAAGVGEPLPEEVVRLMMLLRLNSLARGHSGVRPEVIEA 122 (500)
T ss_pred CcccccccCCccccCcccCHHHHHHHHHHHH--------HHHHcCCCCCCCHHHHHHHHHHHHHHhccCCCcCCHHHHHH
Confidence 479999999 7899999999999999999 999 9999999999999999999999999999944 45554
Q ss_pred H---------HHhhcccccce--------ec----------------------------ceeeecccceeeeeccCcchh
Q 003041 97 I---------SETLNSQTETL--------QF----------------------------ESVDVTEDERIVLEKLSLPSV 131 (854)
Q Consensus 97 ~---------~~~~~~g~~~~--------~~----------------------------~p~~l~~ke~~~l~~~~~~~~ 131 (854)
| |.+|.+||||+ |+ +|+.|++|||.+|. |+|++
T Consensus 123 L~~~lN~~i~P~VP~~GSvGaSGDL~pLahial~L~Geg~v~~~G~~~~a~eal~~~gl~p~~l~~KegLALi--nGt~~ 200 (500)
T PRK09367 123 LLALLNAGVTPVIPEKGSVGASGDLAPLAHMALVLLGEGEAFYKGERLPAAEALAKAGLEPVTLAAKEGLALI--NGTQA 200 (500)
T ss_pred HHHHHhCCCcccCCCCCCccccccHHHHHHHHHHHhCCCceeeCCEeecHHHHHHHcCCCCcCCCCcchhHHh--ccHHH
Confidence 4 56777777764 21 59999999964333 33789
Q ss_pred hhchhhhccccchhhhHHHHHHHhhccccccCcccccccccCCCCccccccccccccceeeecCceeeee-------ecc
Q 003041 132 LSGICAVLDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDGFTAKEEIGVAGDLKVLLNGSKLVGK-------MKS 204 (854)
Q Consensus 132 ~~a~~~l~~~~a~~l~~~a~~~~Als~eal~g~~~~f~~~~~~~~rph~gq~~~A~~~r~lL~gs~~~~~-------~D~ 204 (854)
|+|+++++++++++|+++|++++|||+|+++|+++||||++ |++||||||+++|++||++|+||+++.+ |||
T Consensus 201 ~~a~~al~l~~a~~l~~~a~~~~Als~Eal~g~~~~f~~~~-~~~Rph~Gq~~~A~~lr~lL~gS~l~~~~~~~~~vQD~ 279 (500)
T PRK09367 201 STALALLGLFDAEDLLAAADVAGALSVEALLGSDAPFDARI-HALRGHPGQIDVAANLRALLEGSSIITSSHDCERVQDP 279 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhhhCHHH-HHhCCChhHHHHHHHHHHHHcCCcccccccCCCcCCcc
Confidence 99999999999999999999999999999999999999998 5999999999999999999999999754 599
Q ss_pred ccccccccccchHHHHHHHhhccceEEeccccee----c--c--ccc---hhhHhhhHHHHHHHHHhhcccchhhhcccc
Q 003041 205 EDILEIPKINGKLREVVKSVHSSTRVELNSSVKV----G--I--SGT---AKAVGANALALAAAIHNLGESSLYRAKMNL 273 (854)
Q Consensus 205 yslRc~Pqv~Ga~~d~l~~~~~~~~~ElNs~~~~----~--~--~~~---~~~~~~~~d~l~~a~~~l~~~serr~~~l~ 273 (854)
|||||+|||||+++|++++++++|++||||++|. + + +|| |+++++++|+|++|++++|++||||+++|+
T Consensus 280 ySlRc~PQv~Ga~~d~l~~~~~~v~~ElNS~~DNPlv~~~~~v~~gGNF~g~~lala~D~L~iAla~la~~serR~~~L~ 359 (500)
T PRK09367 280 YSLRCQPQVHGACLDQLRYAAEVLEIEANAVTDNPLVFPDGDVISGGNFHGEPVAFAADFLAIAVAEIGSISERRIARLV 359 (500)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcccCCCCeeeCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999983 2 2 444 788899999999999999999999999999
Q ss_pred cccCccccccccccc-----------------CCCchhhhh---HHHHhhhccchhhHHHHHHHhhhhh----hhHHHHH
Q 003041 274 NSINSDGLRSLFEKD-----------------CSSGDNLRK---TYKLVLDANFEEDYVKFLHEANVLL----GMVWKIV 329 (854)
Q Consensus 274 ~~~~~~gLp~fL~~~-----------------~~~~~~l~~---~~~~~~s~~~~edh~s~~~~~~~~~----~~~~~il 329 (854)
||.+| |||+||+++ ++||++|++ +|++|||.+ |||||||++.+++++ +|+++|+
T Consensus 360 ~p~~s-gLp~fL~~~~g~~~G~~~~q~taaal~ae~r~la~PaS~~s~pts~~-~ED~~Smg~~aark~~~~~~~~~~il 437 (500)
T PRK09367 360 DPALS-GLPPFLVPDPGLNSGFMIAQVTAAALVSENKTLAHPASVDSIPTSAN-QEDHVSMGTHAARKLREMAENLRRVL 437 (500)
T ss_pred Ccccc-CCChhhCCCCCcccchHHHHHHHHHHHHHHHHhcCCCcCCCcCccCc-chhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999 999999862 689999998 799999999 999999999999887 6799999
Q ss_pred HHHHHHHHhhcccc
Q 003041 330 TWEAVLAFVALEGG 343 (854)
Q Consensus 330 a~E~~~a~~al~~~ 343 (854)
|||+++|+||+|++
T Consensus 438 Aiell~a~QA~dlr 451 (500)
T PRK09367 438 AIELLAAAQGLDFR 451 (500)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999998
No 8
>cd00332 PAL-HAL Phenylalanine ammonia-lyase (PAL) and histidine ammonia-lyase (HAL). PAL and HAL are members of the Lyase class I_like superfamily of enzymes that, catalyze similar beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. PAL, present in plants and fungi, catalyzes the conversion of L-phenylalanine to E-cinnamic acid. HAL, found in several bacteria and animals, catalyzes the conversion of L-histidine to E-urocanic acid. Both PAL and HAL contain the cofactor 3, 5-dihydro-5-methylidene-4H-imidazol-4-one (MIO) which is formed by autocatalytic excision/cyclization of the internal tripeptide, Ala-Ser-Gly. PAL is being explored as enzyme substitution therapy for Phenylketonuria (PKU), a disorder which involves an inability to metabolize phenylalanine. HAL failure in humans results in the disease histidinemia.
Probab=100.00 E-value=8.9e-74 Score=644.40 Aligned_cols=309 Identities=25% Similarity=0.265 Sum_probs=280.0
Q ss_pred cceeeeecC---ceeEEecchhhhhhhcCCCCCCCCCcceee-ccCCcccchhhhHHHHHHHHHHHhcCCCcc-hhHHHH
Q 003041 22 SSVYAISNG---LAQVRVDSSALDRLSSTLPNQNPPPVTKFQ-IPIPKTLTLEESRAFLTVLLNKLLLGSSIR-TAFAVL 96 (854)
Q Consensus 22 ~~vygi~tG---~a~~~i~~~~~~~lq~~~~~~~~~~~~~~h-~gvg~~l~~~~vRa~m~~rln~l~~G~SG~-~~~~~l 96 (854)
.+||||||| +++++|++++.+++|+|++ +|| ||||+++|+++|||||++|||+|++|+||+ |.+.+.
T Consensus 43 ~~iYGvnTG~G~~~d~~i~~~~~~~~q~nLi--------~sha~GvG~~l~~~~vRa~m~~Rln~l~~G~SGV~~~vv~~ 114 (444)
T cd00332 43 KPVYGVNTGFGALADVRIDDADLRALQRNLL--------RSHAAGVGPPLPEEVVRAAMLLRLNSLARGHSGVRPEVLER 114 (444)
T ss_pred CceeeeCCCCCCcCCcccCHHHHHHHHHHHH--------HHHhcCCCCCCCHHHHHHHHHHHHHHhccCCCcCCHHHHHH
Confidence 589999999 7899999999999999999 999 999999999999999999999999999994 445555
Q ss_pred H---------HHhhcccccce--------ec----------------------------ceeeecccceeeeeccCcchh
Q 003041 97 I---------SETLNSQTETL--------QF----------------------------ESVDVTEDERIVLEKLSLPSV 131 (854)
Q Consensus 97 ~---------~~~~~~g~~~~--------~~----------------------------~p~~l~~ke~~~l~~~~~~~~ 131 (854)
| |.+|.+||+|+ |+ +|+.|.+||+.+|. |+|++
T Consensus 115 L~~~lN~~i~P~VP~~GSvGaSGDL~pLahial~l~Geg~v~~~G~~~~a~eal~~~gl~p~~l~~KegLALi--ngta~ 192 (444)
T cd00332 115 LVALLNAGVTPVVPERGSVGASGDLAPLAHIALALIGEGEVFYKGERMPAAEALARAGLEPLELGAKEGLALI--NGTAV 192 (444)
T ss_pred HHHHHhCCCcccCCCCCCcccccchHHHHHHHHHHcCCCcEEECCEEeeHHHHHHHcCCCCCCCCCcchhhhh--hccHH
Confidence 4 56777777764 21 69999999964333 34689
Q ss_pred hhchhhhccccchhhhHHHHHHHhhccccccCcccccccccCCCCccccccccccccceeeecCceeeee-------ecc
Q 003041 132 LSGICAVLDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDGFTAKEEIGVAGDLKVLLNGSKLVGK-------MKS 204 (854)
Q Consensus 132 ~~a~~~l~~~~a~~l~~~a~~~~Als~eal~g~~~~f~~~~~~~~rph~gq~~~A~~~r~lL~gs~~~~~-------~D~ 204 (854)
|+|+++++++++++|++++++++|||+|+++|+++||+|++ |++||||||+++|++||.+|+||+++.. |||
T Consensus 193 ~~a~aalal~~a~~l~~~a~~~~Als~Eal~g~~~~f~~~~-~~~rphpGq~~~A~~lr~lL~gs~l~~~~~~~~~lQDp 271 (444)
T cd00332 193 MTALAALALHDAERLLDLADIAGALSLEALRGSDAPFDPRI-HAARPHPGQIEVAANLRALLAGSSLWESHDGERRVQDP 271 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchhcCHhH-HhhCCChhHHHHHHHHHHHhCCCccccccCCCCCCCCC
Confidence 99999999999999999999999999999999999999998 5999999999999999999999999832 499
Q ss_pred ccccccccccchHHHHHHHhhccceEEeccccee----c---c--ccc---hhhHhhhHHHHHHHHHhhcccchhhhccc
Q 003041 205 EDILEIPKINGKLREVVKSVHSSTRVELNSSVKV----G---I--SGT---AKAVGANALALAAAIHNLGESSLYRAKMN 272 (854)
Q Consensus 205 yslRc~Pqv~Ga~~d~l~~~~~~~~~ElNs~~~~----~---~--~~~---~~~~~~~~d~l~~a~~~l~~~serr~~~l 272 (854)
|||||+|||||+++|+++++++++++||||++|. + + +|| |+++++++|+|++|++++|++|+||+.+|
T Consensus 272 ySlRc~PQv~G~~~d~l~~~~~~v~~ElNs~~DNPli~~~~~~v~~ggNF~~~~va~a~D~l~iala~la~~s~rr~~~L 351 (444)
T cd00332 272 YSLRCAPQVHGAARDALRYAARVLEIELNSVTDNPLVDPDNGEVLSGGNFHGQPVALAMDFLAIALAELANLSERRIARL 351 (444)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeCCCCceeeCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999983 2 2 444 78889999999999999999999999999
Q ss_pred ccccCccccccccccc-----------------CCCchhhhh---HHHHhhhccchhhHHHHHHHhhhhh----hhHHHH
Q 003041 273 LNSINSDGLRSLFEKD-----------------CSSGDNLRK---TYKLVLDANFEEDYVKFLHEANVLL----GMVWKI 328 (854)
Q Consensus 273 ~~~~~~~gLp~fL~~~-----------------~~~~~~l~~---~~~~~~s~~~~edh~s~~~~~~~~~----~~~~~i 328 (854)
+||.+| |||+||+++ ++||+.|++ +|++|||.+ ||||+||++.+++++ +++++|
T Consensus 352 ~~p~~~-gLp~fL~~~~g~~~Gf~~~q~~aaal~ae~r~la~P~s~~s~~~s~~-~ED~~Sm~~~aa~~~~~~v~~~~~i 429 (444)
T cd00332 352 VNPALS-GLPAFLVADPGLNSGFMIAQYTAAALVAENKALAHPASVDSIPTSAG-QEDHVSMGLIAARKLREIVDNLRRI 429 (444)
T ss_pred cCcccc-CCChhhCCCCCcccchHHHHHHHHHHHHHHHHhcCCCcCCCccccCC-ccchhccHHHHHHHHHHHHHHHHHH
Confidence 999999 999999962 689999998 799999999 999999999999987 669999
Q ss_pred HHHHHHHHHhhcccc
Q 003041 329 VTWEAVLAFVALEGG 343 (854)
Q Consensus 329 la~E~~~a~~al~~~ 343 (854)
+|||+++|+||+|++
T Consensus 430 lAiell~a~QA~dlr 444 (444)
T cd00332 430 LAIELLAAAQALDLR 444 (444)
T ss_pred HHHHHHHHHHHhhcC
Confidence 999999999999975
No 9
>PLN02457 phenylalanine ammonia-lyase
Probab=100.00 E-value=4.5e-71 Score=639.59 Aligned_cols=309 Identities=19% Similarity=0.185 Sum_probs=275.7
Q ss_pred cceeeeecC---ceeEEecchhhhhhhcCCCCCCCCCcceee-ccCC------cccchhhhHHHHHHHHHHHhcCCCcch
Q 003041 22 SSVYAISNG---LAQVRVDSSALDRLSSTLPNQNPPPVTKFQ-IPIP------KTLTLEESRAFLTVLLNKLLLGSSIRT 91 (854)
Q Consensus 22 ~~vygi~tG---~a~~~i~~~~~~~lq~~~~~~~~~~~~~~h-~gvg------~~l~~~~vRa~m~~rln~l~~G~SG~~ 91 (854)
.+||||||| +++++| ++...||+|++ +|| |||| ++||+++|||||++|+|+|++||||++
T Consensus 96 ~~iYGVtTGfG~~~d~ri--~~~~~LQ~nLi--------rshaaGvg~~~~~g~~lp~~~VRAaMliRlNsL~~G~SGVr 165 (706)
T PLN02457 96 TDSYGVTTGFGATSHRRT--KQGGALQRELI--------RFLNAGIFGTGESGHTLPASATRAAMLVRINTLLQGYSGIR 165 (706)
T ss_pred CeeeeecCCCCCccCCch--hHHHHHHHHHH--------HHHhcCcCCCCCCCCCCCHHHHHHHHHHHHHHhccCCCCCC
Confidence 378999999 577777 67888999999 999 9997 999999999999999999999999944
Q ss_pred -hHHHHH---------HHhhcccccce--------ec-------------------------------ce--eeecccce
Q 003041 92 -AFAVLI---------SETLNSQTETL--------QF-------------------------------ES--VDVTEDER 120 (854)
Q Consensus 92 -~~~~l~---------~~~~~~g~~~~--------~~-------------------------------~p--~~l~~ke~ 120 (854)
.+.+.+ |.+|.+||||+ |+ +| +.|++|||
T Consensus 166 ~evle~L~~lLN~~i~PvVP~~GSVGASGDL~PLAhIAl~L~Geg~~~~v~~~G~~~~a~eAL~~aGl~Pp~~~L~~KEG 245 (706)
T PLN02457 166 FEILEAITKLLNANVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVTPDGEKVTAAEAFKLAGIEGGFFELQPKEG 245 (706)
T ss_pred HHHHHHHHHHHhCcCcccCCCCCCcCccchHHHHHHHHHHHcCCCCceeeccCCEEEcHHHHHHHcCCCCCCcCCCCCcc
Confidence 455444 56777777763 21 45 99999997
Q ss_pred eeeeccCcchhhhchhhhccccchhhhHHHHHHHhhccccccCcccccccccCCCCccccccccccccceeeecCceeee
Q 003041 121 IVLEKLSLPSVLSGICAVLDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDGFTAKEEIGVAGDLKVLLNGSKLVG 200 (854)
Q Consensus 121 ~~l~~~~~~~~~~a~~~l~~~~a~~l~~~a~~~~Als~eal~g~~~~f~~~~~~~~rph~gq~~~A~~~r~lL~gs~~~~ 200 (854)
++|.| + |++|+|++++++++|++|+.+|++++||++||++|+++||||++ |++||||||+++|++||.+|+||+++.
T Consensus 246 LALiN-G-Ta~~~a~aalal~da~~L~~~a~v~~Als~Eal~G~~~~fdp~i-h~~RpHpGQ~e~Aa~ir~lL~GS~l~~ 322 (706)
T PLN02457 246 LALVN-G-TAVGSALASTVLFDANVLAVLAEVLSAVFCEVMQGKPEFTDHLT-HKLKHHPGQIEAAAIMEHILDGSSYMK 322 (706)
T ss_pred hhccc-c-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhcCHHH-HhcCCChhHHHHHHHHHHHhCcCccch
Confidence 44444 3 68999999999999999999999999999999999999999998 599999999999999999999999861
Q ss_pred --------------eeccccccccccccchHHHHHHHhhccceEEecccceec-------c--ccc---hhhHhhhHHHH
Q 003041 201 --------------KMKSEDILEIPKINGKLREVVKSVHSSTRVELNSSVKVG-------I--SGT---AKAVGANALAL 254 (854)
Q Consensus 201 --------------~~D~yslRc~Pqv~Ga~~d~l~~~~~~~~~ElNs~~~~~-------~--~~~---~~~~~~~~d~l 254 (854)
.||||||||+||||||++|+|++++++|++||||++|.+ + ||| |.+++++||.|
T Consensus 323 ~~~~~~~~~~~~~~vQD~YSLRc~PQvlGp~~d~l~~a~~~ie~ElNS~tDNPLId~~~~~vl~GGNF~g~~va~amD~l 402 (706)
T PLN02457 323 AAKKLHETDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKSIEREINSVNDNPLIDVARDKALHGGNFQGTPIGVSMDNT 402 (706)
T ss_pred hhhhccccccccCcCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHhccCCCCceeCCCCceeeCCCCCchHHHHHHHHH
Confidence 359999999999999999999999999999999999842 2 555 78889999999
Q ss_pred HHHHHhhcccchhhhcccccccCcccccccccc----c---------------CCCchhhhh---HHHHhhhccchhhHH
Q 003041 255 AAAIHNLGESSLYRAKMNLNSINSDGLRSLFEK----D---------------CSSGDNLRK---TYKLVLDANFEEDYV 312 (854)
Q Consensus 255 ~~a~~~l~~~serr~~~l~~~~~~~gLp~fL~~----~---------------~~~~~~l~~---~~~~~~s~~~~edh~ 312 (854)
++|++++|++|+||+.+|+||.+|+|||+||++ + ++||+.|++ +|++|+|.+ ||||+
T Consensus 403 ~lAla~lg~ls~rr~~~Lvnp~~n~GLP~fL~~~~~pgl~~Gf~~~q~taAAl~sEl~~LA~PvS~~~~pt~~~-nED~~ 481 (706)
T PLN02457 403 RLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQH-NQDVN 481 (706)
T ss_pred HHHHHHHHHHHHHHHHHhcCccccCCCCHhhcCCCCCCcccccHHHHHHHHHHHHHHHHhcCCCccCcccccCC-ccccC
Confidence 999999999999999999999999999999983 1 699999998 799999999 99999
Q ss_pred HHHHHhhhhh----hhHHHHHHHHHHHHHhhccccc
Q 003041 313 KFLHEANVLL----GMVWKIVTWEAVLAFVALEGGE 344 (854)
Q Consensus 313 s~~~~~~~~~----~~~~~ila~E~~~a~~al~~~~ 344 (854)
|||+.+||++ ++++.++|||+++||||+|+|.
T Consensus 482 Smg~~sArkt~e~ve~l~~~lAieLl~a~QAlDLR~ 517 (706)
T PLN02457 482 SLGLISARKTAEAVDILKLMSSTYLVALCQAIDLRH 517 (706)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999986 6799999999999999999983
No 10
>PF00221 Lyase_aromatic: Aromatic amino acid lyase; InterPro: IPR001106 This entry represents phenylalanine ammonia-lyase (PAL; 4.3.1.24 from EC) and the mechanistically related protein histidine ammonia lyase (HAL; 4.3.1.3 from EC). Both contain a catalytic Ala-Ser-Gly triad that is post-translationally cyclised []. PAL is a key biosynthetic catalyst in phenylpropanoid assembly in plants and fungi, and is involved in the biosynthesis of a wide variety of secondary metabolites such as flavanoids, furanocoumarin phytoalexins and cell wall components. These compounds are important for normal growth and in responses to environmental stress. HAL catalyses the first step in histidine degradation, the removal of an ammonia group from histidine to produce urocanic acid. The core domain in PAL and Hal share about 30% sequence identity, with PAL containing an additional approximately 160 residues extending from the common fold [].; GO: 0016841 ammonia-lyase activity, 0009058 biosynthetic process; PDB: 2RJR_A 2RJS_A 2OHY_B 3KDZ_B 2QVE_A 3KDY_A 2NYF_A 2YII_B 1Y2M_B 1T6P_B ....
Probab=100.00 E-value=3.5e-72 Score=637.79 Aligned_cols=310 Identities=24% Similarity=0.260 Sum_probs=258.1
Q ss_pred cceeeeecC---ceeEEecchhhhhhhcCCCCCCCCCcceee-ccCCcccchhhhHHHHHHHHHHHhcCCCc-chhHHHH
Q 003041 22 SSVYAISNG---LAQVRVDSSALDRLSSTLPNQNPPPVTKFQ-IPIPKTLTLEESRAFLTVLLNKLLLGSSI-RTAFAVL 96 (854)
Q Consensus 22 ~~vygi~tG---~a~~~i~~~~~~~lq~~~~~~~~~~~~~~h-~gvg~~l~~~~vRa~m~~rln~l~~G~SG-~~~~~~l 96 (854)
.+||||||| +++++|++++..++|+|++ +|| ||+|++||+++|||+|++|+|+|++|+|| .|.+++.
T Consensus 48 ~~iYGvnTG~G~~~~~~i~~~~~~~~q~nll--------~~h~~gvG~~l~~~~vRa~m~~Rln~l~~G~SGv~~e~v~~ 119 (473)
T PF00221_consen 48 KPIYGVNTGFGALKDVRIPPEELAELQRNLL--------RSHAAGVGPPLPPEVVRAAMLLRLNSLARGYSGVRPELVER 119 (473)
T ss_dssp CTCTTTSBSSGGGTTSBC-GHHHHHHHHHHH--------HHH---EEEEB-HHHHHHHHHHHHHHHTTSTS---HHHHHH
T ss_pred CceeccccCCccccCCcCCHHHHHHHHHHHH--------HhhccccccCCCHHHHHHHHHHHHHHHccCCCccCHHHHHH
Confidence 479999999 7899999999999999999 999 99999999999999999999999999999 4456655
Q ss_pred HH---------Hhhcccccce--------ec----------------------------ceeeecccceeeeeccCcchh
Q 003041 97 IS---------ETLNSQTETL--------QF----------------------------ESVDVTEDERIVLEKLSLPSV 131 (854)
Q Consensus 97 ~~---------~~~~~g~~~~--------~~----------------------------~p~~l~~ke~~~l~~~~~~~~ 131 (854)
+. .+|.+||+|+ |+ +|+.|++|||.+|.+ +|++
T Consensus 120 l~~~ln~~i~P~Vp~~GSvGaSGDL~pLahial~l~Geg~v~~~G~~~~a~eal~~~gl~p~~l~~kEgLAlin--Gt~~ 197 (473)
T PF00221_consen 120 LVEMLNRGITPVVPERGSVGASGDLAPLAHIALALIGEGEVYYDGERMPAAEALARAGLEPLELGPKEGLALIN--GTAV 197 (473)
T ss_dssp HHHHHHHTEEE-BEEES-SSSSSSHHHHHHHHHHHTTSTTEEECTEEEEHHHHHHHTT-SS---TTTHHHHHHS--SSHH
T ss_pred HHHHHhCCCCceeeCCCCCCccccHHHHHHHHHHHcCCcceeecceeccHHHHHHhcCcCCeecCCcchHHHHh--ccHH
Confidence 54 5666666664 22 699999999744433 3679
Q ss_pred hhchhhhccccchhhhHHHHHHHhhccccccCcccccccccCCCCccccccccccccceeeecCceeeee----eccccc
Q 003041 132 LSGICAVLDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDGFTAKEEIGVAGDLKVLLNGSKLVGK----MKSEDI 207 (854)
Q Consensus 132 ~~a~~~l~~~~a~~l~~~a~~~~Als~eal~g~~~~f~~~~~~~~rph~gq~~~A~~~r~lL~gs~~~~~----~D~ysl 207 (854)
++|+++++++++++|++++|+++||++||++|+.+||||++ |++||||||+++|++||++|+||+++.+ ||||||
T Consensus 198 ~~a~aalal~~a~~ll~~a~~~~Als~Eal~g~~~~f~~~~-~~~rph~Gq~~~A~~lr~lL~gS~l~~~~~~vQDpySl 276 (473)
T PF00221_consen 198 STALAALALHDARRLLRLADIVAALSLEALRGNPSPFDPRV-HAARPHPGQIESAANLRELLKGSYLWSSHDRVQDPYSL 276 (473)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-BCGGG-HHH-HHTST-HHHHHHHHHHHHHHTT-SSSBHHHCSSS-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhh-hcccCCchHHHHHHHHHHhhCCCcCcccccccCCccee
Confidence 99999999999999999999999999999999999999998 5999999999999999999999999966 599999
Q ss_pred cccccccchHHHHHHHhhccceEEeccccee----c---c--ccc---hhhHhhhHHHHHHHHHhhcccchhhhcccccc
Q 003041 208 LEIPKINGKLREVVKSVHSSTRVELNSSVKV----G---I--SGT---AKAVGANALALAAAIHNLGESSLYRAKMNLNS 275 (854)
Q Consensus 208 Rc~Pqv~Ga~~d~l~~~~~~~~~ElNs~~~~----~---~--~~~---~~~~~~~~d~l~~a~~~l~~~serr~~~l~~~ 275 (854)
||+|||||+++|+++++++++++||||++|. + + ++| |.++++++|+|++|++++|++||||+.+|+||
T Consensus 277 Rc~PQv~G~~~d~l~~~~~~v~~ElNs~~DNPlv~~~~~~v~~ggnF~~~~va~a~D~l~~Ala~l~~~s~rR~~~L~~p 356 (473)
T PF00221_consen 277 RCAPQVHGAARDALAHAREVVEIELNSATDNPLVFPDDGRVLSGGNFHGQPVALAMDALAIALAHLANLSERRIARLVNP 356 (473)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHTS--SSSEEEGGGTEEE-S-TT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred eehHHHhHHHHHHHHHHHHHHHHHHcCCCCCceEecCCCeeeecCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999983 2 2 444 78889999999999999999999999999999
Q ss_pred cCccccccccccc-----------------CCCchhhhh---HHHHhhhccchhhHHHHHHHhhhhh----hhHHHHHHH
Q 003041 276 INSDGLRSLFEKD-----------------CSSGDNLRK---TYKLVLDANFEEDYVKFLHEANVLL----GMVWKIVTW 331 (854)
Q Consensus 276 ~~~~gLp~fL~~~-----------------~~~~~~l~~---~~~~~~s~~~~edh~s~~~~~~~~~----~~~~~ila~ 331 (854)
.+|+|||+||+++ ++||+.|++ +|++|||++ ||||+||++.+++++ +++++|+||
T Consensus 357 ~~~~gLP~fL~~~~g~~~G~~~~q~~aaaL~aE~r~La~P~s~~s~pts~~-~ED~~Sm~~~aa~k~~~~v~~~~~ilAi 435 (473)
T PF00221_consen 357 AFNNGLPPFLAAEPGLNSGFMILQYTAAALVAENRHLANPASIDSIPTSGG-QEDHVSMGPLAARKLRRIVENLRYILAI 435 (473)
T ss_dssp TTTTTS-GGGSSSCTTB-TTHHHHHHHHHHHHHHHHHTS-SCGGG--BTTT-TBSS---HHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCCCChhhcCCCCCCcccchHhHHHHHHHHHHHhhccCcccccccchhh-hhhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999972 688999988 899999999 999999999998887 669999999
Q ss_pred HHHHHHhhcccc
Q 003041 332 EAVLAFVALEGG 343 (854)
Q Consensus 332 E~~~a~~al~~~ 343 (854)
|+++|+||+|++
T Consensus 436 ell~a~QA~dlr 447 (473)
T PF00221_consen 436 ELLAAAQALDLR 447 (473)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999998
No 11
>PLN02530 histidine-tRNA ligase
Probab=100.00 E-value=4e-68 Score=614.81 Aligned_cols=398 Identities=30% Similarity=0.504 Sum_probs=349.2
Q ss_pred CCCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC-chhhhhhhhccCCceeeecccccc
Q 003041 431 PKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED-SKLIYDLADQGGELCSLRYDLTVP 509 (854)
Q Consensus 431 ~~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~-~k~~y~~~D~~G~~l~LRpDlT~~ 509 (854)
.++|+|++||+|.++..++++++.++++|++|||++|.||+||+.++|..+.|+. .++||+|.|++|+.++||||+|+|
T Consensus 70 ~~~p~G~~D~lp~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~~~~~~~y~f~D~~g~~l~LRpD~T~~ 149 (487)
T PLN02530 70 VNPPKGTRDFPPEDMRLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGEEITDQLYNFEDKGGRRVALRPELTPS 149 (487)
T ss_pred cCCCCCcCcCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHhccccCcccccceEEEECCCCCEEecCCCCcHH
Confidence 6899999999999999999999999999999999999999999999998777765 578999999999999999999999
Q ss_pred hhhhhhhcc---ccchhhhhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhhhcCCC--cceeee
Q 003041 510 FARYVAMNG---LTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIG--DYEIKL 584 (854)
Q Consensus 510 ~aR~~a~~~---~~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~Lgl~--~~~i~L 584 (854)
+||+++++. ..|+|+||+|+|||+|+|+.||+|||+|+|+|+||..+ ..+|+|+|.++.++|+.||++ ++.|+|
T Consensus 150 iaR~~~~~~~~~~~P~r~~y~g~vfR~e~~q~gr~REf~Q~giEiiG~~~-~~aDaEvi~l~~~~l~~lgl~~~~~~i~i 228 (487)
T PLN02530 150 LARLVLQKGKSLSLPLKWFAIGQCWRYERMTRGRRREHYQWNMDIIGVPG-VEAEAELLAAIVTFFKRVGITSSDVGIKV 228 (487)
T ss_pred HHHHHHhcccccCCCeEEEEEcCEEcCcCCCCCCccceEEcCeeEeCCCC-cchhHHHHHHHHHHHHHcCCCCCceEEEE
Confidence 999999863 46999999999999999999999999999999999854 578999999999999999996 799999
Q ss_pred chhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHHHHHHHhcCcceeecccccccccccCChHHHHHHHhhhcchh
Q 003041 585 NHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLF 664 (854)
Q Consensus 585 nh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~gl~~~~~~~L~~l~~~~g~~~~vl~~l~~~~~~~ 664 (854)
||+++++.+++.++++.+++..++..++++++..++++.+.| ..++++.+..+.+..++.+. .++++.. +
T Consensus 229 ~~~~i~~~~l~~~~~~~~~~~~v~~~~d~l~k~~~~~l~~~L-~~~~~~~~~~~~l~~l~~~~-----~~~~l~~----~ 298 (487)
T PLN02530 229 SSRKVLQAVLKSYGIPEESFAPVCVIVDKLEKLPREEIEKEL-DTLGVSEEAIEGILDVLSLK-----SLDDLEA----L 298 (487)
T ss_pred cCHHHHHHHHHHcCCchhhHHHHHHHHHhhhhccHHHHHHHH-HHcCCCHHHHHHHHHHHhcc-----CHHHHHH----H
Confidence 999999999999999998888888889999888888876554 56788777776666655432 2233332 1
Q ss_pred hcccccccccchHHHHHHHhhhccccceeeeeccccccCccccc-----------ccccccCCcccccccccCCcccCcc
Q 003041 665 LENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG-----------VGSIAAGGRYDNLIGMFGTKQVPAV 733 (854)
Q Consensus 665 ~~~~~~~~al~~L~~l~~~l~~~gv~~~I~~D~sl~rgl~YYtG-----------~~~Ia~GGRYD~Li~~fg~~~~pAv 733 (854)
... ..+++++|+.++++++.+|+..++.|||+++||++|||| .++|++|||||+|++.||+++.|||
T Consensus 299 ~~~--~~~~l~~L~~l~~~l~~~g~~~~i~~Dl~lvrgldYYTGivFe~~~~~~~~~~I~gGGRYD~Li~~fgg~~~pAv 376 (487)
T PLN02530 299 LGA--DSEAVADLKQLFSLAEAYGYQDWLVFDASVVRGLAYYTGIVFEGFDRAGKLRAICGGGRYDRLLSTFGGEDTPAC 376 (487)
T ss_pred hhh--hHHHHHHHHHHHHHHHHcCCCccEEEecccccCccccCceEEEEEecCCCcceeeecccHHHHHHHhCCCCCCee
Confidence 211 245899999999999999998889999999999999999 1379999999999999998899999
Q ss_pred ceehhhHHHHHHHHHHHHhhhhccccchhhhhhhhcCC-CccchHHHHHHHhhhccceeeeeh-hhHHHHHhhhhcCCCc
Q 003041 734 GVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVH-KKVMKLIDRARESKIP 811 (854)
Q Consensus 734 GfsigieRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~~-~~l~k~l~~A~~~gi~ 811 (854)
||++|++||+.++.+.+. .+.|. .+++|+|+++++ .+.++++++++||++|++|+++.. .++++++++|++.|++
T Consensus 377 GFa~g~~~l~~~l~~~g~--~p~~~-~~~dVlVi~~~~~~~~~A~~ia~~LR~~Gi~vevd~~~~~l~k~ik~A~k~g~~ 453 (487)
T PLN02530 377 GFGFGDAVIVELLKEKGL--LPELP-HQVDDVVFALDEDLQGAAAGVASRLREKGRSVDLVLEPKKLKWVFKHAERIGAK 453 (487)
T ss_pred EEEEhHHHHHHHHHhcCC--CCCCC-CCCcEEEEEcChHHHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHCCCC
Confidence 999999999888765322 22344 578999999886 567899999999999999999874 5699999999999999
Q ss_pred eEEEeecccccccceeeeccccchhhhcchhhh
Q 003041 812 WMVIVGERELNEGIVKLKNIDTTQEEVISRSNF 844 (854)
Q Consensus 812 ~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~el 844 (854)
|++++|++|+++++|+|||+.++++..|+++++
T Consensus 454 ~iviiG~~E~~~~~V~vK~l~sgeq~~v~~~el 486 (487)
T PLN02530 454 RLVLVGASEWERGMVRVKDLSSGEQTEVKLDEL 486 (487)
T ss_pred EEEEEchhHHhCCeEEEEECCCCcceEechHHc
Confidence 999999999999999999999999999988765
No 12
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.4e-67 Score=599.46 Aligned_cols=398 Identities=34% Similarity=0.587 Sum_probs=349.1
Q ss_pred CCCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccC--CC-chhhhhhhhccCCceeeecccc
Q 003041 431 PKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYG--ED-SKLIYDLADQGGELCSLRYDLT 507 (854)
Q Consensus 431 ~~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g--~~-~k~~y~~~D~~G~~l~LRpDlT 507 (854)
.++|+|++||+|.++..+++++++++++|++|||.+|.||+|||.++|..++| +. .++||+|+|++|+.++||||+|
T Consensus 4 ~~~p~G~~d~~p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~~g~~l~LRpD~T 83 (423)
T PRK12420 4 MRNVKGTKDYLPEEQVLRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQGKRDLALRYDLT 83 (423)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEecCCCceeccccccc
Confidence 57899999999999999999999999999999999999999999999976544 22 4789999999999999999999
Q ss_pred cchhhhhhhcc--ccchhhhhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhhhcCCCcceeeec
Q 003041 508 VPFARYVAMNG--LTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIGDYEIKLN 585 (854)
Q Consensus 508 ~~~aR~~a~~~--~~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~Lgl~~~~i~Ln 585 (854)
+|+||+++++. ..|+|+||+|+|||+++++.||+|||+|+|||+||.. +..+|+|+|.++.++|+.||+ ++.|+||
T Consensus 84 ~~iaR~va~~~~~~~p~r~~y~g~vfR~~~~~~gr~rE~~Q~g~EiiG~~-~~~adaEvi~la~~~l~~lg~-~~~i~l~ 161 (423)
T PRK12420 84 IPFAKVVAMNPNIRLPFKRYEIGKVFRDGPIKQGRFREFIQCDVDIVGVE-SVMAEAELMSMAFELFRRLNL-EVTIQYN 161 (423)
T ss_pred HHHHHHHHhCcCCCCCeeEEEEcceECCCCCCCCccceeEECCeeeECCC-CCcccHHHHHHHHHHHHHCCC-CEEEEEc
Confidence 99999999863 4589999999999999999999999999999999974 457999999999999999999 7999999
Q ss_pred hhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHHHHHHHhcCcceeecccccccccccCChHHHHHHHhhhcchhh
Q 003041 586 HRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFL 665 (854)
Q Consensus 586 h~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~gl~~~~~~~L~~l~~~~g~~~~vl~~l~~~~~~~~ 665 (854)
|+++++.+++.||++.+.+..++..++++++..++++.+.| ...+++.+..+.|..|+.. ++. +.++.+.. ..
T Consensus 162 ~~~l~~~il~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~l-~~~~l~~~~~~~l~~l~~~-~~~-~~~~~~~~----~~ 234 (423)
T PRK12420 162 NRKLLNGILQAIGIPTELTSDVILSLDKIEKIGIDGVRKDL-LERGISEEMADTICNTVLS-CLQ-LSIADFKE----AF 234 (423)
T ss_pred CHHHHHHHHHHcCCChhhhhchhhheechhhcCHHHHHHHH-HHcCCCHHHHHHHHHHHhc-cCh-hhHHHHHH----hc
Confidence 99999999999999999888888888888888888886655 4568888888888888744 443 34555542 22
Q ss_pred cccccccccchHHHHHHHhhhccccceeeeeccccccCccccc-------c-----cccccCCcccccccccCC--cccC
Q 003041 666 ENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG-------V-----GSIAAGGRYDNLIGMFGT--KQVP 731 (854)
Q Consensus 666 ~~~~~~~al~~L~~l~~~l~~~gv~~~I~~D~sl~rgl~YYtG-------~-----~~Ia~GGRYD~Li~~fg~--~~~p 731 (854)
.++...+++++|++++++++.+|+..+|.|||+++|+++|||| . .+||+|||||+|++.|++ .+.|
T Consensus 235 ~~~~~~~~l~~l~~l~~~l~~~g~~~~i~~Dl~~vr~l~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~~p 314 (423)
T PRK12420 235 NNPLVAEGVNELQQLQQYLIALGINENCIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGGRYDNIIGAFRGDDMNYP 314 (423)
T ss_pred cCHHHHHHHHHHHHHHHHHHHhCCCCcEEEeccccCCCcccceeEEEEEecCCCccccccCCccHHHHHHHhCCCCCCCC
Confidence 3344567999999999999999998889999999999999999 1 269999999999999965 4689
Q ss_pred ccceehhhHHHHHHHHHHHHhhhhccccchhhhhhhhcCCCccchHHHHHHHhh-hccceeeeeh-hhHHHHHhhhhcCC
Q 003041 732 AVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWN-AKVKAEYMVH-KKVMKLIDRARESK 809 (854)
Q Consensus 732 AvGfsigieRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~~~~~a~~la~~Lr~-~GI~ael~~~-~~l~k~l~~A~~~g 809 (854)
||||++++|||+.++...+ +...++||+|++.++ ...+.+++++||+ +||+|+++.. .++++++++|++.|
T Consensus 315 AvGfa~~~~~l~~~l~~~~------~~~~~~dvlI~~~~~-~~~a~~ia~~Lr~~~Gi~ve~~~~~~~l~~~i~~A~~~g 387 (423)
T PRK12420 315 TVGISFGLDVIYTALSQKE------TISSTADVFIIPLGT-ELQCLQIAQQLRSTTGLKVELELAGRKLKKALNYANKEN 387 (423)
T ss_pred ceeEEEcHHHHHHHHHhcC------CCCCCceEEEEEcCC-HHHHHHHHHHHHhhcCCeEEEecCCcCHHHHHHHHHHcC
Confidence 9999999999998886532 223568999999765 3469999999999 9999999874 57999999999999
Q ss_pred CceEEEeecccccccceeeeccccchhhhcchhhh
Q 003041 810 IPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNF 844 (854)
Q Consensus 810 i~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~el 844 (854)
++|++++|++|.++++|+||++.++++.+|+++++
T Consensus 388 ~~~iviig~~e~~~~~v~vr~~~~~~~~~v~~~~~ 422 (423)
T PRK12420 388 IPYVLIIGEEEVSTGTVMLRNMKEGSEVKVPLSSL 422 (423)
T ss_pred CCEEEEEChhHHhcCeEEEEECCCCceeeeeHHHc
Confidence 99999999999999999999999999999998875
No 13
>TIGR01226 phe_am_lyase phenylalanine ammonia-lyase. Members of this family are found, so far, in plants and fungi. From phenylalanine, this enzyme yields cinnaminic acid, a precursor of many important plant compounds. This protein shows extensive homology to histidine ammonia-lyase, the first enzyme of a histidine degradation pathway.
Probab=100.00 E-value=4e-68 Score=614.23 Aligned_cols=311 Identities=18% Similarity=0.173 Sum_probs=274.3
Q ss_pred cceeeeecC---ceeEEecchhhhhhhcCCCCCCCCCcceee-ccCCc-------ccchhhhHHHHHHHHHHHhcCCCcc
Q 003041 22 SSVYAISNG---LAQVRVDSSALDRLSSTLPNQNPPPVTKFQ-IPIPK-------TLTLEESRAFLTVLLNKLLLGSSIR 90 (854)
Q Consensus 22 ~~vygi~tG---~a~~~i~~~~~~~lq~~~~~~~~~~~~~~h-~gvg~-------~l~~~~vRa~m~~rln~l~~G~SG~ 90 (854)
.+||||||| ++++++ ++...||+|++ ++| +|||+ +||+++|||+|++|+|+|++||||+
T Consensus 81 ~~IYGVnTGfG~~~d~r~--~~~~~lQ~~Li--------r~h~aGvg~~~~~~~~~lp~~~vRAaMlvRlNsL~~G~SGV 150 (680)
T TIGR01226 81 TDVYGVTTGFGGTSHRRT--KQGGALQKELL--------RFLNAGILGTGSDNHNSLPEEATRAAMLVRINTLLQGYSGI 150 (680)
T ss_pred CeeeeecCCCCCccCccc--hHHHHHHHHHH--------HHHhcCCCCCCCcCCCcCCHHHHHHHHHHHHHHhccCCCCC
Confidence 479999999 577776 46788999999 999 99998 9999999999999999999999994
Q ss_pred h-hHHHHH---------HHhhcccccce--------ec-------------------------------ce-eeecccce
Q 003041 91 T-AFAVLI---------SETLNSQTETL--------QF-------------------------------ES-VDVTEDER 120 (854)
Q Consensus 91 ~-~~~~l~---------~~~~~~g~~~~--------~~-------------------------------~p-~~l~~ke~ 120 (854)
+ .+.+.+ |.+|.+||+|+ |+ +| ++|++|||
T Consensus 151 r~evle~l~~lLN~~i~P~VP~rGSIGASGDL~PLShIa~aL~Geg~v~~~~~~G~~~~a~eAL~~aGl~p~~~L~pKEG 230 (680)
T TIGR01226 151 RFEILEAITKLLNANVTPCLPLRGTITASGDLVPLSYIAGLITGRPNSKVYSPDGQIMSAAEALKLAGIEGGFELQPKEG 230 (680)
T ss_pred CHHHHHHHHHHHhCcCcccCCCCCCcCccchHHHHHHHHHHHcCCCCceeecCCCeEEeHHHHHHHcCCCCCCCCCCccc
Confidence 4 454444 56777777763 11 47 99999997
Q ss_pred eeeeccCcchhhhchhhhccccchhhhHHHHHHHhhccccccCcccccccccCCCCccccccccccccceeeecCceeee
Q 003041 121 IVLEKLSLPSVLSGICAVLDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDGFTAKEEIGVAGDLKVLLNGSKLVG 200 (854)
Q Consensus 121 ~~l~~~~~~~~~~a~~~l~~~~a~~l~~~a~~~~Als~eal~g~~~~f~~~~~~~~rph~gq~~~A~~~r~lL~gs~~~~ 200 (854)
++|.| + |++++|++++++++|++|+.++++++||++|||+|+++ |++.++|++||||||+++|++||.+|+||+++.
T Consensus 231 LALvN-G-Ta~~~a~aalal~~a~~L~~~a~v~~Al~~Eal~G~~~-~~~~~~~~~RpHpGQ~e~Aa~ir~lL~GS~l~~ 307 (680)
T TIGR01226 231 LAIVN-G-TAVGASMASLVLFEANILALLAEVLSAMFCEVMNGKPE-FTDHLTHKLKHHPGQIEAAAIMEHILDGSSYAK 307 (680)
T ss_pred hhhhc-c-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCc-CChHHHHHcCCCCcHHHHHHHHHHHhCCChhhh
Confidence 44443 3 68999999999999999999999999999999999999 655556799999999999999999999998864
Q ss_pred --------------eeccccccccccccchHHHHHHHhhccceEEecccceec-------c--ccc---hhhHhhhHHHH
Q 003041 201 --------------KMKSEDILEIPKINGKLREVVKSVHSSTRVELNSSVKVG-------I--SGT---AKAVGANALAL 254 (854)
Q Consensus 201 --------------~~D~yslRc~Pqv~Ga~~d~l~~~~~~~~~ElNs~~~~~-------~--~~~---~~~~~~~~d~l 254 (854)
.||||||||+||||||++|+|++++++|++||||++|.| . ||| |.+++.+||.|
T Consensus 308 ~~~~~~~~~~~~~~vQD~YSlRc~PQvlGp~~e~l~~a~~~ie~ElNS~tDNPLI~~~~~~vlhgGNF~g~~ia~amD~l 387 (680)
T TIGR01226 308 HAEKEVEMDPLQKPKQDRYALRTSPQWLGPQIEVIRSATKMIEREINSVNDNPLIDVERGKAHHGGNFQGTPIGVSMDNT 387 (680)
T ss_pred hhhhccccCccCCcCCCcccchhhhhhhHHHHHHHHHHHHHHHHHHccCCCCCceeCCCCceeeCCCCCchHHHHHHHHH
Confidence 259999999999999999999999999999999999832 2 455 78889999999
Q ss_pred HHHHHhhcccchhhhcccccccCcccccccccc--c-----------------CCCchhhhh---HHHHhhhccchhhHH
Q 003041 255 AAAIHNLGESSLYRAKMNLNSINSDGLRSLFEK--D-----------------CSSGDNLRK---TYKLVLDANFEEDYV 312 (854)
Q Consensus 255 ~~a~~~l~~~serr~~~l~~~~~~~gLp~fL~~--~-----------------~~~~~~l~~---~~~~~~s~~~~edh~ 312 (854)
++|++++|++|+||+.+|+||.+|+|||+||++ + ++|++.|++ ++++|+|.+ +|||+
T Consensus 388 ~lAla~lg~ls~~r~~~Lvnp~~n~GLP~fL~~~~~pgl~~Gf~g~q~~~aal~sEl~~LA~PvS~~~~~a~~~-nEDv~ 466 (680)
T TIGR01226 388 RLAIAAIGKLMFAQFSELVNDFYNNGLPSNLAGGRNPSLDYGFKGAEIAMASYTSELQFLANPVTNHVQSAEQH-NQDVN 466 (680)
T ss_pred HHHHHHHHHHHHHHHHHhcCccccCCCCHhhCCCCCCCcccccHHHHHHHHHHHHHHHHhcCCCccCccccccC-ccccc
Confidence 999999999999999999999999999999993 1 688999998 789999999 99999
Q ss_pred HHHHHhhhhh----hhHHHHHHHHHHHHHhhccccccc
Q 003041 313 KFLHEANVLL----GMVWKIVTWEAVLAFVALEGGELL 346 (854)
Q Consensus 313 s~~~~~~~~~----~~~~~ila~E~~~a~~al~~~~~~ 346 (854)
|||+.+||++ ++++.++|||++++|||+|++.+.
T Consensus 467 Smg~~sArk~~~~ve~l~~m~A~eLl~a~QAlDLR~l~ 504 (680)
T TIGR01226 467 SLGLISARKTAEAVDILKLMLATYLYALCQAVDLRHLE 504 (680)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987 669999999999999999998443
No 14
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=100.00 E-value=9.6e-63 Score=562.61 Aligned_cols=388 Identities=21% Similarity=0.309 Sum_probs=312.3
Q ss_pred CCCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC----chhhhhhhhccCCceeeeccc
Q 003041 431 PKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED----SKLIYDLADQGGELCSLRYDL 506 (854)
Q Consensus 431 ~~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~----~k~~y~~~D~~G~~l~LRpDl 506 (854)
.++|+|++||+|.++..++++++.++++|++|||++|.||+||+.++|..++|+. .++||+|.|++|+.++||||+
T Consensus 4 ~~~p~G~~D~lp~~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d~~g~~l~LRpd~ 83 (430)
T CHL00201 4 IQAIRGTKDILPDEINYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDRSNRDITLRPEG 83 (430)
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEEEcCCCCEEEeCCCC
Confidence 4789999999999999999999999999999999999999999999998877743 278999999999999999999
Q ss_pred ccchhhhhhhcc----ccchhhhhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhhhcCCCccee
Q 003041 507 TVPFARYVAMNG----LTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIGDYEI 582 (854)
Q Consensus 507 T~~~aR~~a~~~----~~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~Lgl~~~~i 582 (854)
|+|+||+++++. ..|+|+||+|+|||+|+|+.||+|||+|+|+|+||..+ +.+|+|+|.++.++|+.||++++.|
T Consensus 84 T~~iaR~~~~~~~~~~~~p~R~~y~g~vfR~e~~q~GR~Ref~Q~g~EiiG~~~-~~aD~Evi~l~~~~l~~lGl~~~~i 162 (430)
T CHL00201 84 TAGIVRAFIENKMDYHSNLQRLWYSGPMFRYERPQSGRQRQFHQLGIEFIGSID-ARADTEVIHLAMQIFNELQVKNLIL 162 (430)
T ss_pred cHHHHHHHHHccccccCCCeEEEEEcceecCCCCcCCccceeEEeceEEECCCC-hhhHHHHHHHHHHHHHHcCCCceEE
Confidence 999999987753 35789999999999999999999999999999999865 4789999999999999999999999
Q ss_pred eechhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHHHHHHHhcCcceeecccccccc----cccC-ChHHHHHHH
Q 003041 583 KLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFV----KERG-SPLVLLSKL 657 (854)
Q Consensus 583 ~Lnh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~gl~~~~~~~L~~l~----~~~g-~~~~vl~~l 657 (854)
+|||+++++..-. ....+...+. ++.. +++....+.+..++ ...+ ...++++..
T Consensus 163 ~l~~~~~~~~~~~-------~~~~l~~~l~------------~~~~--~~~~~~~~~l~~~~~~~l~~k~~~~~~~~~~a 221 (430)
T CHL00201 163 DINSIGKLEDRQS-------YQLKLVEYLS------------QYQD--DLDTDSQNRLYSNPIRILDSKNLKTQEILDGA 221 (430)
T ss_pred EECCCCchhhHHH-------HHHHHHHHHH------------HHHh--hcCHHHHHHHHhhhHHHhhccCccHHHHHhhh
Confidence 9999988763110 0000101111 1100 01111111111110 0011 111333322
Q ss_pred hhhcchhhcccccccccchHHHHHHHhhhccccceeeeeccccccCccccc------------ccccccCCccccccccc
Q 003041 658 RQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG------------VGSIAAGGRYDNLIGMF 725 (854)
Q Consensus 658 ~~~~~~~~~~~~~~~al~~L~~l~~~l~~~gv~~~I~~D~sl~rgl~YYtG------------~~~Ia~GGRYD~Li~~f 725 (854)
.. +. .....+++++|+.+.++++.+|+ .+.||++++||++|||| .++|++|||||+|++.|
T Consensus 222 ~~----l~-~~~~~~~~~~l~~~~~~l~~~g~--~~~~Dl~lvRgldYYTG~vFE~~~~~~~~~~~i~gGGRYD~L~~~f 294 (430)
T CHL00201 222 PK----IS-DFLSLESTEHFYDVCTYLNLLNI--PYKINYKLVRGLDYYNDTAFEIKTLSSNGQDTICGGGRYDSLIHQL 294 (430)
T ss_pred HH----HH-hhhhHHHHHHHHHHHHHHHHcCC--cEEECcccccCCccccccEEEEEECCCCCcceeeeccchHHHHHHh
Confidence 21 11 11124678899999999999987 49999999999999999 13799999999999999
Q ss_pred CCcccCccceehhhHHHHHHHHHHHHhhhhccccchhhhhhhhcCC-CccchHHHHHHHhhhccceeeeeh-hhHHHHHh
Q 003041 726 GTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVH-KKVMKLID 803 (854)
Q Consensus 726 g~~~~pAvGfsigieRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~~-~~l~k~l~ 803 (854)
|+++.|||||++++|||+.++.+.. .. +..+++|+|++.++ ...++++++++||++|++|+++.. .+++++++
T Consensus 295 g~~~~PavGfa~g~erl~~~l~~~~----~~-~~~~~~v~v~~~~~~~~~~a~~ia~~LR~~Gi~veid~~~~~l~k~~k 369 (430)
T CHL00201 295 GGPKTPAVGCAIGLERLLLIAKDNI----IL-PKQSIDVYIATQGLKAQKKGWEIIQFLEKQNIKFELDLSSSNFHKQIK 369 (430)
T ss_pred CCCCCCeeEEEecHHHHHHHHhccc----cC-CCCCCCEEEEEcCHHHHHHHHHHHHHHHhCCCeEEEeeCCCCHHHHHH
Confidence 9888999999999999999886521 11 23457899998876 678899999999999999999874 56999999
Q ss_pred hhhcCCCceEEEeecccccccceeeeccccchhhhcchhhhHHHHHHhh
Q 003041 804 RARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 852 (854)
Q Consensus 804 ~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l 852 (854)
+|++.|+++++++|++|+++++|+||++.++++..++++++++.+.++.
T Consensus 370 ~A~~~~~~~viiiG~~E~~~~~vtvk~l~~~~q~~i~~~~~~~~~~~~~ 418 (430)
T CHL00201 370 QAGKKRAKACIILGDNEIMDNCITIKWLDEQVQENAQYSNFKQEISYLK 418 (430)
T ss_pred HHHHcCCCEEEEEechHHhCCcEEEEECCCCCcEEEcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987653
No 15
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=1.1e-61 Score=548.08 Aligned_cols=359 Identities=31% Similarity=0.441 Sum_probs=314.9
Q ss_pred CCCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC-chhhhhhhhc-cCCceeeeccccc
Q 003041 431 PKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED-SKLIYDLADQ-GGELCSLRYDLTV 508 (854)
Q Consensus 431 ~~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~-~k~~y~~~D~-~G~~l~LRpDlT~ 508 (854)
.++|+|++||+|.++..++++++.++++|++|||.+|.||+||+.+++..+.|+. .++||+|.|+ +|+.++||||+|+
T Consensus 3 ~~~p~G~~D~lp~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~~~~~~~~~f~d~~~g~~l~LRpD~T~ 82 (391)
T PRK12292 3 WQLPEGIRDLLPEEARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGGAILDLRTFKLVDQLSGRTLGLRPDMTA 82 (391)
T ss_pred CCCCCcchhcCHHHHHHHHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCCccchhhhEEEeecCCCCEEEECCCCcH
Confidence 5789999999999999999999999999999999999999999999998777654 5789999999 9999999999999
Q ss_pred chhhhhhhc---cccchhhhhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhhhcCCCcceeeec
Q 003041 509 PFARYVAMN---GLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIGDYEIKLN 585 (854)
Q Consensus 509 ~~aR~~a~~---~~~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~Lgl~~~~i~Ln 585 (854)
|+||+++++ ...|+|+||+|+|||+++|+.||+|||+|+|+|+||.. +..+|+|+|.++.++|+.+|++++.|+||
T Consensus 83 ~iaR~~a~~~~~~~~p~r~~y~g~vfR~~~~~~gr~ref~Q~g~EiiG~~-~~~aDaEvi~l~~~~l~~lgl~~~~i~i~ 161 (391)
T PRK12292 83 QIARIAATRLANRPGPLRLCYAGNVFRAQERGLGRSREFLQSGVELIGDA-GLEADAEVILLLLEALKALGLPNFTLDLG 161 (391)
T ss_pred HHHHHHHHhccCCCCCeEEEeeceeeecCCCcCCCccchhccceEEeCCC-CchHHHHHHHHHHHHHHHcCCCCeEEEec
Confidence 999999975 35689999999999999999999999999999999975 45789999999999999999999999999
Q ss_pred hhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHHHHHHHhcCcceeecccccccccccCChHHHHHHHhhhcchhh
Q 003041 586 HRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFL 665 (854)
Q Consensus 586 h~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~gl~~~~~~~L~~l~~~~g~~~~vl~~l~~~~~~~~ 665 (854)
|+++++++++.||++++++..++..++++|+..++++.. +++.+..+.|..++.++| +.++++++.. +.
T Consensus 162 ~~~i~~~il~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~------~l~~~~~~~l~~l~~~~g-~~~~l~~~~~----~~ 230 (391)
T PRK12292 162 HVGLFRALLEAAGLSEELEEVLRRALANKDYVALEELVL------DLSEELRDALLALPRLRG-GREVLEEARK----LL 230 (391)
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHHHHhcCHHHHHHHHh------cCCHHHHHHHHHHHHhcC-CHHHHHHHHH----hc
Confidence 999999999999999999999999999988777765532 567777888888888888 4578877753 22
Q ss_pred cccccccccchHHHHHHHhhhccccceeeeeccccccCccccc---------cc-ccccCCcccccccccCCcccCccce
Q 003041 666 ENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG---------VG-SIAAGGRYDNLIGMFGTKQVPAVGV 735 (854)
Q Consensus 666 ~~~~~~~al~~L~~l~~~l~~~gv~~~I~~D~sl~rgl~YYtG---------~~-~Ia~GGRYD~Li~~fg~~~~pAvGf 735 (854)
.+....+++++|+.++++++.+|+..+|.|||+++||++|||| .+ +|++|||||+|++.|| ++.|||||
T Consensus 231 ~~~~~~~~l~~L~~l~~~l~~~~~~~~i~~D~~lvrgl~YYtG~vFe~~~~~~~~~i~~GGRYD~L~~~fg-~~~pAvGf 309 (391)
T PRK12292 231 PSLPIKRALDELEALAEALEKYGYGIPLSLDLGLLRHLDYYTGIVFEGYVDGVGNPIASGGRYDDLLGRFG-RARPATGF 309 (391)
T ss_pred cChHHHHHHHHHHHHHHHHHHhCCCceEEEehhhccCCcCccceEEEEEECCCCCcccCCcchhhHHHHcC-CCCCCceE
Confidence 3334467999999999999999987789999999999999999 12 5999999999999995 58999999
Q ss_pred ehhhHHHHHHHHHHHHhhhhccccchhhhhhhhcCC-CccchHHHHHHHhhhccceeeeeh-hhHHHHHhhhhcCCC
Q 003041 736 SLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVH-KKVMKLIDRARESKI 810 (854)
Q Consensus 736 sigieRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~~-~~l~k~l~~A~~~gi 810 (854)
++++|||+.+ . . .+...+++++|++.++ ...++++++++||+.|++|++... .++++++++|++.|+
T Consensus 310 ai~ldrl~~~--~-~-----~~~~~~~~~~v~~~~~~~~~~a~~~~~~Lr~~G~~~~~~~~~~~~~~~~~~a~~~~~ 378 (391)
T PRK12292 310 SLDLDRLLEL--Q-L-----ELPVEARKDLVIAPDSEALAAALAAAQELRKKGEIVVLALPGRNFEDAREYARDRQI 378 (391)
T ss_pred EeeHHHHHhh--c-c-----ccccccCCcEEEEeCcccHHHHHHHHHHHHHcCCEEEEecCCCChHHHHHHHhhcCe
Confidence 9999999874 1 1 0223456788888775 677899999999999999999875 458999999999998
No 16
>KOG0222 consensus Phenylalanine and histidine ammonia-lyase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.8e-60 Score=511.37 Aligned_cols=313 Identities=18% Similarity=0.157 Sum_probs=277.1
Q ss_pred ceeeeecC----ceeEEecchhhhhhhcCCCCCCCCCcceee-ccCC---ccc-chhhhHHHHHHHHHHHhcCCCcchh-
Q 003041 23 SVYAISNG----LAQVRVDSSALDRLSSTLPNQNPPPVTKFQ-IPIP---KTL-TLEESRAFLTVLLNKLLLGSSIRTA- 92 (854)
Q Consensus 23 ~vygi~tG----~a~~~i~~~~~~~lq~~~~~~~~~~~~~~h-~gvg---~~l-~~~~vRa~m~~rln~l~~G~SG~~~- 92 (854)
++|||+|| ..+++|+.++++.+|-|++ ++| .|+| .|+ |...+||.|++|+|.|++||||++.
T Consensus 114 ~vYGvTTGFG~t~~r~t~~~~aLqk~~i~ll--------~a~~~g~g~~~s~~~P~~rtR~~m~lRIN~L~qGySGI~~E 185 (715)
T KOG0222|consen 114 DVYGVTTGFGATSHRRTIPGEALQKELIRLL--------NAGIFGYGKDTSPTLPNPRTRAAMLLRINTLLQGYSGIRFE 185 (715)
T ss_pred ceeeeeccccccccccccCHHHHHHHHHHHH--------HhcCcccCCCCCCCCCcHHHHHHHHHHHHHHHhccccccHH
Confidence 68999999 4689999999999999999 999 8999 554 5559999999999999999999662
Q ss_pred H----HHH-----HHHhhcccccce--------ec-------------------------------ce-eeecccceeee
Q 003041 93 F----AVL-----ISETLNSQTETL--------QF-------------------------------ES-VDVTEDERIVL 123 (854)
Q Consensus 93 ~----~~l-----~~~~~~~g~~~~--------~~-------------------------------~p-~~l~~ke~~~l 123 (854)
+ ..+ .|.+|.+|.+++ |+ .| +.|+||||.+|
T Consensus 186 ~leai~~~~N~~~~p~lP~rGTi~aSGDL~PLs~iA~~L~G~pn~K~~~P~~~~~~A~~a~k~~gls~f~eL~PKEGLAL 265 (715)
T KOG0222|consen 186 ILEAITSLLNANITPYLPLRGTITASGDLVPLSYIAGGLTGRPNSKMWGPSGEWLTAKEAFKLAGLSPFFELQPKEGLAL 265 (715)
T ss_pred HHHHHHHHHhcCcccccCcCcccccCCCcccHHHHhhhhcCCCCCcccCCCCCcccHHHHHHHcCCCcceecccccceee
Confidence 2 222 256788888864 21 47 89999998555
Q ss_pred eccCcchhhhchhhhccccchhhhHHHHHHHhhccccccCcccccccccCCCCccccccccccccceeeecCceeee---
Q 003041 124 EKLSLPSVLSGICAVLDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDGFTAKEEIGVAGDLKVLLNGSKLVG--- 200 (854)
Q Consensus 124 ~~~~~~~~~~a~~~l~~~~a~~l~~~a~~~~Als~eal~g~~~~f~~~~~~~~rph~gq~~~A~~~r~lL~gs~~~~--- 200 (854)
.| + |++.+|+++.++++|..+...||+++||+.|.+.|.++.||+.+ |.+||||||+++|++||.+|.||....
T Consensus 266 vN-G-Tav~s~L~s~vl~~An~ia~~aev~sAl~~eVmkGk~e~~D~~~-Hrlk~H~GQieaA~~m~~iLd~ss~~ke~a 342 (715)
T KOG0222|consen 266 VN-G-TAVGSGLASTVLERANIIAVQAEVLSALFAEVMKGKPEFTDHLT-HRLKHHPGQIEAAARMEHILDGSSYPKEAA 342 (715)
T ss_pred ec-c-chHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccch-hhccCCCcHHHHHHHHHHHhcccccHHHHH
Confidence 55 4 56999999999999999999999999999999999999999998 699999999999999999999986543
Q ss_pred -----------eeccccccccccccchHHHHHHHhhccceEEecccceec-------c--ccc---hhhHhhhHHHHHHH
Q 003041 201 -----------KMKSEDILEIPKINGKLREVVKSVHSSTRVELNSSVKVG-------I--SGT---AKAVGANALALAAA 257 (854)
Q Consensus 201 -----------~~D~yslRc~Pqv~Ga~~d~l~~~~~~~~~ElNs~~~~~-------~--~~~---~~~~~~~~d~l~~a 257 (854)
.||+|.|||.|||||++.|+|++++++|++||||++|.+ + ||| |++.+-++|++++|
T Consensus 343 e~Hr~dpl~k~~QD~YaLR~~PQ~~G~~~evI~fatkiIe~EiNSvnDNPli~vsR~kai~GGNFqGt~~~~AmD~~~la 422 (715)
T KOG0222|consen 343 ESHRMDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKIIEREINSVNDNPLIDVSRNKAIHGGNFQGTPIGVAMDNLRLA 422 (715)
T ss_pred HHhccCccccchhhhhhhhcCchhhchHHHHHHHHHHHHHHHhhccCCCcceecccccccccCccCCCcchhhhhHHHHH
Confidence 139999999999999999999999999999999999842 2 666 88889999999999
Q ss_pred HHhhcccchhhhcccccccCccccccccccc-------------------CCCchhhhh---HHHHhhhccchhhHHHHH
Q 003041 258 IHNLGESSLYRAKMNLNSINSDGLRSLFEKD-------------------CSSGDNLRK---TYKLVLDANFEEDYVKFL 315 (854)
Q Consensus 258 ~~~l~~~serr~~~l~~~~~~~gLp~fL~~~-------------------~~~~~~l~~---~~~~~~s~~~~edh~s~~ 315 (854)
+++||.||+||+.+|||+-.|+|||.||++| |||++-||| +|+.++|.+ +|||+|||
T Consensus 423 iaei~kl~~~q~e~LvN~~~nngLPs~Lt~~rn~~Ld~Gf~~ae~a~As~~SE~q~L~~P~t~~~~sas~~-nqD~~SlG 501 (715)
T KOG0222|consen 423 IAEIGKLMFAQFEELVNDFYNNGLPSNLTAGRNPSLDYGFKGAEIAMASYCSELQFLANPVTVHVQSASQH-NQDVNSLG 501 (715)
T ss_pred HHHHHHHHHHHHHHHhhhhhhcCCCccccCCCCCCcccchhHHHHHHHHHHhhhhhhcCCccccccchhhh-cccchhhc
Confidence 9999999999999999999999999999983 899999999 899999999 99999999
Q ss_pred HHhhhhh----hhHHHHHHHHHHHHHhhcccccccc
Q 003041 316 HEANVLL----GMVWKIVTWEAVLAFVALEGGELLG 347 (854)
Q Consensus 316 ~~~~~~~----~~~~~ila~E~~~a~~al~~~~~~~ 347 (854)
-.++||. +-+..++++||++||||+|+|.++.
T Consensus 502 ~~ssRKt~~aVe~lk~m~t~~LvA~CQ~id~rhLe~ 537 (715)
T KOG0222|consen 502 LISSRKTLEAVEILKLMSTTELVAACQAIDLRHLEE 537 (715)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHhhhhHhhhhH
Confidence 9999886 3489999999999999999986554
No 17
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=100.00 E-value=2.1e-59 Score=532.24 Aligned_cols=375 Identities=33% Similarity=0.514 Sum_probs=313.1
Q ss_pred CCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC----chhhhhhhhccCCceeeecccc
Q 003041 432 KLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED----SKLIYDLADQGGELCSLRYDLT 507 (854)
Q Consensus 432 ~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~----~k~~y~~~D~~G~~l~LRpDlT 507 (854)
++|+|++||+|.++..++++++.++++|++|||++|.||+||+.++|..+.|+. .++||+|.|++|+.++||||+|
T Consensus 1 ~~p~G~~d~~p~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LRpD~T 80 (397)
T TIGR00442 1 QAPRGTRDFLPEEMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDKGGRSLTLRPEGT 80 (397)
T ss_pred CCCCCcCCCCHHHHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEECCCCCEEeecCCCc
Confidence 479999999999999999999999999999999999999999999997766543 3689999999999999999999
Q ss_pred cchhhhhhhcc---ccchhhhhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhhhcCCCcceeee
Q 003041 508 VPFARYVAMNG---LTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIGDYEIKL 584 (854)
Q Consensus 508 ~~~aR~~a~~~---~~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~Lgl~~~~i~L 584 (854)
+|+||+++++. ..|+|+||+|+|||+|+++.||+|||+|+|+|+||..+ ..+|+|+|.++.++|+.||++++.|+|
T Consensus 81 ~~iaR~~~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~ref~Q~g~eiig~~~-~~~d~E~i~l~~e~l~~lg~~~~~i~i 159 (397)
T TIGR00442 81 APVARAVIENKLLLPKPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSDS-PLADAEIIALAAEILKELGIKDFTLEI 159 (397)
T ss_pred HHHHHHHHhcccccCCCeEEEEEcCeecCCCCCCCcccceEEcCeeeeCCCC-HHHHHHHHHHHHHHHHHcCCCceEEEe
Confidence 99999999763 45899999999999999999999999999999999864 457999999999999999999999999
Q ss_pred chhhhhhhhhhhcCCCccchhhhccchhh-hhhhhHHHHHHHHHHhcCcceeecccccccccccCChHHHHHHHhhhcch
Q 003041 585 NHRLLLDGMLEICGVPSEKFRTICSSIDK-LDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSL 663 (854)
Q Consensus 585 nh~~ll~~il~~~gi~~~~~~~v~~~l~k-l~k~~~~~i~~~L~~~~gl~~~~~~~L~~l~~~~g~~~~vl~~l~~~~~~ 663 (854)
||+++++.+++ .+..+++.|++ +++...+.+...+....+++.+..+.+..|+. ..+ ++++.+
T Consensus 160 ~~~~i~~~~~~-------~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~------ 223 (397)
T TIGR00442 160 NSLGILEGRLE-------YREALLRYLDKHLDKLGEDSVRRLEKNPLRILDSKNEKIQELLK--EAP-KILDFL------ 223 (397)
T ss_pred cCcccHHHHHH-------HHHHHHHHHHHhHhhcCHHHHHHHhhccccCchhhhHHHHHHHh--cCH-HHHHHh------
Confidence 99999999987 35667777777 55444433322221123444444444444432 111 222111
Q ss_pred hhcccccccccchHHHHHHHhhhccccceeeeeccccccCccccc----------c--cccccCCcccccccccCCcccC
Q 003041 664 FLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG----------V--GSIAAGGRYDNLIGMFGTKQVP 731 (854)
Q Consensus 664 ~~~~~~~~~al~~L~~l~~~l~~~gv~~~I~~D~sl~rgl~YYtG----------~--~~Ia~GGRYD~Li~~fg~~~~p 731 (854)
..+++++|++++++++.+|+ .+.|||+++|+++|||| . ++|++|||||+|++.|++.+.|
T Consensus 224 ------~~~~~~~l~~l~~~l~~~~~--~i~~dl~~~r~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~ 295 (397)
T TIGR00442 224 ------DEESRAHFEELKELLDALGI--PYKIDPSLVRGLDYYTGTVFEFVTDELGAQGTICGGGRYDGLVEELGGPPTP 295 (397)
T ss_pred ------hHHHHHHHHHHHHHHHHcCC--CEEECCccccCchhhcceEEEEEECCCCccceeeeccchHHHHHHhCCCCCc
Confidence 14688999999999999998 49999999999999999 1 4799999999999999877899
Q ss_pred ccceehhhHHHHHHHHHHHHhhhhccccchhhhhhhhcCC-CccchHHHHHHHhhhccceeeeeh-hhHHHHHhhhhcCC
Q 003041 732 AVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVH-KKVMKLIDRARESK 809 (854)
Q Consensus 732 AvGfsigieRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~~-~~l~k~l~~A~~~g 809 (854)
||||++++|||+.++.+.+. .+ |...+++|+|++.++ .+.++++++++||++||+|++++. .++++++++|++.|
T Consensus 296 avGfs~~~~~l~~~l~~~~~--~~-~~~~~~~vlV~~~~~~~~~~~~~i~~~Lr~~gi~v~~~~~~~~l~k~~~~a~~~g 372 (397)
T TIGR00442 296 AVGFAIGIERLLLLLEELGL--EP-PEESSPDVYVVPLGEEAELEALKLAQKLRKAGIRVEVDLGGRKLKKQLKYADKLG 372 (397)
T ss_pred eEEeeecHHHHHHHHHhcCC--CC-CCCCCCcEEEEEeCHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHHcC
Confidence 99999999999999876432 11 223578999998876 677899999999999999999874 56999999999999
Q ss_pred CceEEEeecccccccceeeeccccc
Q 003041 810 IPWMVIVGERELNEGIVKLKNIDTT 834 (854)
Q Consensus 810 i~~iviIg~~e~~~g~V~Vk~l~~~ 834 (854)
++|+|+||++|.+.++|+|||+.++
T Consensus 373 ~~~~i~ig~~e~~~~~v~vrnl~~~ 397 (397)
T TIGR00442 373 ARFAVILGEDELANGTVTLKDLETG 397 (397)
T ss_pred CCEEEEEChhHHhCCeEEEEeCCCC
Confidence 9999999999999999999999864
No 18
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.4e-58 Score=526.12 Aligned_cols=381 Identities=31% Similarity=0.506 Sum_probs=308.2
Q ss_pred CCCCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC----chhhhhhhhccCCceeeecc
Q 003041 430 LPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED----SKLIYDLADQGGELCSLRYD 505 (854)
Q Consensus 430 ~~~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~----~k~~y~~~D~~G~~l~LRpD 505 (854)
..++|+|++||+|.++..++++++.++++|++|||++|.||+||+.++|..+.|++ .++||+|.|++|+.++||||
T Consensus 3 ~~~~p~G~~d~~p~~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LRpd 82 (412)
T PRK00037 3 KIQAPRGTRDILPEESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDKGGRSLTLRPE 82 (412)
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEEEcCCCCEEEecCC
Confidence 46899999999999999999999999999999999999999999999997766665 47899999999999999999
Q ss_pred cccchhhhhhhccccchhhhhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhhhcCCCcceee--
Q 003041 506 LTVPFARYVAMNGLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIGDYEIK-- 583 (854)
Q Consensus 506 lT~~~aR~~a~~~~~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~Lgl~~~~i~-- 583 (854)
+|+|++|+++++...|+|+||+|+|||+|+++.||+|||+|+|+|+||..+ ..+|+|+|.++.++|+.||++++.+.
T Consensus 83 ~T~~~ar~~~~~~~~p~r~~~~g~vfR~e~~~~gr~ref~Q~g~ei~g~~~-~~~d~E~i~~~~~~l~~lg~~~~~~~l~ 161 (412)
T PRK00037 83 GTAPVVRAVIEHKLQPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSDS-PLADAEVIALAADILKALGLKGLKLLIN 161 (412)
T ss_pred CcHHHHHHHHhCCCCCeEEEEEcCccccCCCCCCcccceEEcCeeeeCCCC-cchhHHHHHHHHHHHHHcCCCceeeeec
Confidence 999999999987669999999999999999999999999999999999865 45899999999999999999777774
Q ss_pred --------echhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHHHHHHHhcCcceeecccccccccccCChHHHHH
Q 003041 584 --------LNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLS 655 (854)
Q Consensus 584 --------Lnh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~gl~~~~~~~L~~l~~~~g~~~~vl~ 655 (854)
+||+++++.+++. +++. + .+....+....... .++.+. .+. .++++
T Consensus 162 ~~~~~~~~~~~~~~l~~~l~~-~~~~-----l-------~~~~~~~~~~~~~~-------~~~~~~-----~~~-~~~~~ 215 (412)
T PRK00037 162 SLGDFEIRANYRKALVGFLEK-GLDE-----L-------DEDSKRRLETNPLR-------ILDKKD-----KED-QELLK 215 (412)
T ss_pred cCCCHHHhHHHHHHHHHHHHh-Cchh-----h-------chHHHHHHhhCchh-------hhcccc-----hhh-HHHHh
Confidence 4555556666654 3331 0 00000000000000 000000 011 12222
Q ss_pred HHhhhcchhhcccccccccchHHHHHHHhhhccccceeeeeccccccCccccc---------c---cccccCCccccccc
Q 003041 656 KLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG---------V---GSIAAGGRYDNLIG 723 (854)
Q Consensus 656 ~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~gv~~~I~~D~sl~rgl~YYtG---------~---~~Ia~GGRYD~Li~ 723 (854)
... .+.. .....++++|+.+.++++.+|+ ++.|||+++||++|||| . ++|++|||||+|++
T Consensus 216 ~~~----~~~~-~~~~~~~~~l~~l~~~l~~~~~--~i~~Dl~~~r~l~YYtG~vFe~~~~~~g~~~~i~~GGRYD~L~~ 288 (412)
T PRK00037 216 DAP----KLLD-YLDEESKEHFEELKELLDALGI--PYVIDPRLVRGLDYYTGTVFEFVTDDLGAQGTVCGGGRYDGLVE 288 (412)
T ss_pred cch----HHHH-HhhHHHHHHHHHHHHHHHHcCC--CEEECCCcccChhhccceEEEEEECCCCccceeeeccchhHHHH
Confidence 111 0100 0113467788888999998887 69999999999999999 1 37999999999999
Q ss_pred ccCCcccCccceehhhHHHHHHHHHHHHhhhhccccchhhhhhhhcCC-CccchHHHHHHHhhhccceeeeeh-hhHHHH
Q 003041 724 MFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVH-KKVMKL 801 (854)
Q Consensus 724 ~fg~~~~pAvGfsigieRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~~-~~l~k~ 801 (854)
.|++++.|||||++++|||+.++.+++ + ++++|+|++.++ ...++.++++.||++||+|+++.. .+++++
T Consensus 289 ~f~~~~~pavGfs~~le~l~~~l~~~~------~--~~~~vlI~~~~~~~~~~a~~i~~~Lr~~Gi~v~i~~~~~~~~~~ 360 (412)
T PRK00037 289 QFGGPPTPAVGFAIGVERLLLLLEELG------E--EPVDVYVVPLGEDAELAALKLAEKLRAAGIRVELDYGGRKLKKQ 360 (412)
T ss_pred HhCCCCCceEEEEEcHHHHHHHHHhcC------C--CCCCEEEEEeChHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHH
Confidence 998778999999999999999887632 2 468999999876 567799999999999999999764 579999
Q ss_pred HhhhhcCCCceEEEeecccccccceeeeccccchhhhcchhhhHHHHHHhh
Q 003041 802 IDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 852 (854)
Q Consensus 802 l~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l 852 (854)
+++|++.|++|+++||++|.++++|+||++.++++..++++|++++|++.+
T Consensus 361 ~~~a~~~gi~~~viig~~e~~~~~v~vr~~~~~~~~~v~~~el~~~i~~~~ 411 (412)
T PRK00037 361 FKYADKSGARFVLILGEDELANGTVTVKDLRTGEQQTVPLDELVEALKELL 411 (412)
T ss_pred HHHHHHcCCCEEEEEChhHHhCCeEEEEECCCCceEEeeHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999998765
No 19
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=1.3e-57 Score=513.44 Aligned_cols=363 Identities=20% Similarity=0.289 Sum_probs=304.4
Q ss_pred CCCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC-chhhhhhhhc-cCCceeeeccccc
Q 003041 431 PKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED-SKLIYDLADQ-GGELCSLRYDLTV 508 (854)
Q Consensus 431 ~~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~-~k~~y~~~D~-~G~~l~LRpDlT~ 508 (854)
.++|+|++|++|.++..+++++++++++|++|||.+|.||+||+.++|..+.|+. .+.||+|.|+ +|+.++||||+|+
T Consensus 7 ~~~p~G~rD~lp~e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~~~~~~~y~f~D~~~g~~l~LRpD~T~ 86 (392)
T PRK12421 7 WLLPDGVADVLPEEAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQDLKLQTFKLIDQLSGRLMGVRADITP 86 (392)
T ss_pred cCCCCcccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCccchhceEEEEcCCCCcEEEECCcCCH
Confidence 3689999999999999999999999999999999999999999999998777765 4679999999 6999999999999
Q ss_pred chhhhhhhc--cccchhhhhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhhhcCCCcceeeech
Q 003041 509 PFARYVAMN--GLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIGDYEIKLNH 586 (854)
Q Consensus 509 ~~aR~~a~~--~~~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~Lgl~~~~i~Lnh 586 (854)
|+||+++++ ...|+|+||+|+|||+++++.||+|||+|+|+|+||..+ ..+|+|+|.++.++|+.||+++++|+|||
T Consensus 87 ~iaR~~a~~~~~~~p~R~~Y~g~VfR~~~~~~gr~rEf~Q~GvEiiG~~~-~~aDaEvi~l~~e~l~~lgi~~~~l~ig~ 165 (392)
T PRK12421 87 QVARIDAHLLNREGVARLCYAGSVLHTLPQGLFGSRTPLQLGAELYGHAG-IEADLEIIRLMLGLLRNAGVPALHLDLGH 165 (392)
T ss_pred HHHHHHHhhcCCCCceEEEEeeeEEEcCCCcCCCcCccceeceEEeCCCC-chhHHHHHHHHHHHHHHcCCCCeEEEeCC
Confidence 999998865 356899999999999988999999999999999999854 57899999999999999999999999999
Q ss_pred hhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHHHHHHHhcCcceeecccccccccccCChHHHHHHHhhhcchhh-
Q 003041 587 RLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFL- 665 (854)
Q Consensus 587 ~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~gl~~~~~~~L~~l~~~~g~~~~vl~~l~~~~~~~~- 665 (854)
+++++.+++.+|++++.+..+++.++++++..++++. ...+++++.++.|..|+.+.|++ +.+++.... +.
T Consensus 166 ~~i~~~il~~l~l~~~~~~~l~~~l~kk~~~~l~~~~----~~~~~~~~~~~~l~~L~~~~g~~-~~l~~~~~~---~~~ 237 (392)
T PRK12421 166 VGIFRRLAELAGLSPEEEEELFDLLQRKALPELAEVC----QNLGVGSDLRRMFYALARLNGGL-EALDRALSV---LAL 237 (392)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCHHHHHHHH----HhcCCCHHHHHHHHHHHHhcCCH-HHHHHHHhh---ccc
Confidence 9999999999999999999999999988877666543 34567777777788888888876 555554321 11
Q ss_pred cccccccccchHHHHHHHhhhccccceeeeeccccccCccccc----------ccccccCCcccccccccCCcccCccce
Q 003041 666 ENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG----------VGSIAAGGRYDNLIGMFGTKQVPAVGV 735 (854)
Q Consensus 666 ~~~~~~~al~~L~~l~~~l~~~gv~~~I~~D~sl~rgl~YYtG----------~~~Ia~GGRYD~Li~~fg~~~~pAvGf 735 (854)
.++...+++++|+.+++.++.++....+.|||+++||++|||| ..+|++|||||+|++.||+ +.|||||
T Consensus 238 ~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~DlslvrgldYYTG~vFe~~~~~~~~~i~~GGRYD~L~~~fg~-~~pAvGf 316 (392)
T PRK12421 238 QDAAIRQALDELKTLAAHLKNRWPELPVSIDLAELRGYHYHTGLVFAAYIPGRGQALARGGRYDGIGEAFGR-ARPATGF 316 (392)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhCCCceEEEeeccccCCCCcCCCEEEEEECCCCCcccCCCCccchhHhhCC-CCCCceE
Confidence 2334567899999999999988655579999999999999999 2369999999999999974 7999999
Q ss_pred ehhhHHHHHHHHHHHHhhhhccccchhhhhhhhcCCCccchHHHHHHHhhhccceeeeehhhHHHHHhhhhcCCCceEEE
Q 003041 736 SLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVI 815 (854)
Q Consensus 736 sigieRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~~~~~a~~la~~Lr~~GI~ael~~~~~l~k~l~~A~~~gi~~ivi 815 (854)
|+++|||+.++... . ..+++|++.++. ..+++++++||+.|+++++++.... .++ +.++...++
T Consensus 317 ai~lerL~~~l~~~--------~--~~~~~~~~~~~~-~~~~~~a~~LR~~G~~~~~~~~~~~----~~~-~~~~~~~~~ 380 (392)
T PRK12421 317 SMDLKELLALQFLE--------E--EAGAILAPWGDD-PDLLAAIAELRQQGERVVQLLPGDD----GSS-EPGCDHRLV 380 (392)
T ss_pred EeeHHHHHhhcccc--------c--CCceEEeecCCc-HHHHHHHHHHHhCCCEEEEeCCCcc----hhH-HhCCCeEEE
Confidence 99999999877421 1 126777776643 4578999999999999999764321 223 457777777
Q ss_pred eecc
Q 003041 816 VGER 819 (854)
Q Consensus 816 Ig~~ 819 (854)
++++
T Consensus 381 ~~~~ 384 (392)
T PRK12421 381 LQDG 384 (392)
T ss_pred EECC
Confidence 7743
No 20
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=100.00 E-value=1.4e-53 Score=469.11 Aligned_cols=299 Identities=32% Similarity=0.533 Sum_probs=268.4
Q ss_pred hhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhhhccCCceeeecccccchhhhhhhc
Q 003041 438 RDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMN 517 (854)
Q Consensus 438 ~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D~~G~~l~LRpDlT~~~aR~~a~~ 517 (854)
+||+|.++..++++++.++++|++|||++|.||+||+.+++..+.|...++||+|+|++|+.++||||+|+|+||+++++
T Consensus 1 ~D~~p~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~~~~~~~~~~~d~~g~~l~LRpD~T~~iaR~~~~~ 80 (314)
T TIGR00443 1 RDLLPEEAARKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGGILNEDLFKLFDSLGRVLGLRPDMTTPIARAVSTR 80 (314)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCCcchhceEEEECCCCCEEeecCcCcHHHHHHHHHh
Confidence 58999999999999999999999999999999999999999876664467899999999999999999999999999874
Q ss_pred ---cccchhhhhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhhhcCCCcceeeechhhhhhhhh
Q 003041 518 ---GLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIGDYEIKLNHRLLLDGML 594 (854)
Q Consensus 518 ---~~~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~Lgl~~~~i~Lnh~~ll~~il 594 (854)
...|.|+||+|+|||+++++.||+|||+|+|+|+||.. +..+|+|+|.++.++++.+|++++.|+|||+++++.++
T Consensus 81 ~~~~~~p~r~~y~g~VfR~~~~~~gr~re~~Q~g~Eiig~~-~~~adaEvi~l~~~~l~~lg~~~~~i~l~~~~il~~il 159 (314)
T TIGR00443 81 LRDRPLPLRLCYAGNVFRTNESGAGRSREFTQAGVELIGAG-GPAADAEVIALLIEALKALGLKDFKIELGHVGLVRALL 159 (314)
T ss_pred cccCCCCeEEEEeceEeecCCCcCCCcccccccceEEeCCC-CchhHHHHHHHHHHHHHHcCCCCeEEEeCcHHHHHHHH
Confidence 35799999999999999999999999999999999975 45789999999999999999999999999999999999
Q ss_pred hhcCCCccchhhhccchhhhhhhhHHHHHHHHHHhcCcceeecccccccccccCChHHHHHHHhhhcchhhccccccccc
Q 003041 595 EICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLENSSAKLAL 674 (854)
Q Consensus 595 ~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~gl~~~~~~~L~~l~~~~g~~~~vl~~l~~~~~~~~~~~~~~~al 674 (854)
+.|+++++++..+++.++++|+..+++ +....+++++.++.+..++.+.|++.++++++.. +..+....+++
T Consensus 160 ~~~~~~~~~~~~l~~~l~~~~~~~~~~----~~~~~~l~~~~~~~l~~l~~~~g~~~~~l~~l~~----~~~~~~~~~~l 231 (314)
T TIGR00443 160 EEAGLPEEAREALREALARKDLVALEE----LLAELGLDPEVRERLLALPRLRGDGEEVLEEARA----LAGSETAEAAL 231 (314)
T ss_pred HHcCCCHHHHHHHHHHHHhcCHHHHHH----HHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHH----hccCHHHHHHH
Confidence 999999999999999999988776654 3445678888888898999899987788888764 22333456799
Q ss_pred chHHHHHHHhhhccccceeeeeccccccCccccc----------ccccccCCcccccccccCCcccCccceehhhHHHHH
Q 003041 675 DDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG----------VGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFT 744 (854)
Q Consensus 675 ~~L~~l~~~l~~~gv~~~I~~D~sl~rgl~YYtG----------~~~Ia~GGRYD~Li~~fg~~~~pAvGfsigieRL~~ 744 (854)
++|++++++|+.+|+...|.||++++|+++|||| ..+|++|||||+|++.|| ++.|||||++++|||..
T Consensus 232 ~~l~~~~~~l~~~~~~~~i~~D~~~~r~~~YYtGivFe~~~~~~~~~i~~GGRYD~L~~~fg-~~~~AvGfa~~~d~l~~ 310 (314)
T TIGR00443 232 DELEAVLELLEARGVEEYISLDLGLVRGYHYYTGLIFEGYAPGLGAPIAGGGRYDNLLGRFG-RPLPATGFALNLERLLE 310 (314)
T ss_pred HHHHHHHHHHHHhCCCCeEEEecccccCCCCccceEEEEEECCCCCcccCCccHHHHHHHcC-CCCCCceEEecHHHHHH
Confidence 9999999999999987789999999999999999 237999999999999996 58999999999999987
Q ss_pred HH
Q 003041 745 IM 746 (854)
Q Consensus 745 ~L 746 (854)
++
T Consensus 311 ~l 312 (314)
T TIGR00443 311 AL 312 (314)
T ss_pred Hh
Confidence 75
No 21
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=100.00 E-value=2.5e-53 Score=467.18 Aligned_cols=297 Identities=42% Similarity=0.694 Sum_probs=251.8
Q ss_pred cchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhhhccCCceeeecccccchhhhhh
Q 003041 436 GTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVA 515 (854)
Q Consensus 436 G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D~~G~~l~LRpDlT~~~aR~~a 515 (854)
||+||+|.+++.++++++.++++|++|||++|.||+||+.+++....++..+++|+|+|++|+.++||||+|+|+||+++
T Consensus 1 G~~d~~~~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~~~~~~~~~~D~~G~~l~LR~D~T~~iaR~~a 80 (311)
T PF13393_consen 1 GFRDLLPEEARKRERIESKLREVFERHGYEEIETPLLEYYELFLDKSGEDSDNMYRFLDRSGRVLALRPDLTVPIARYVA 80 (311)
T ss_dssp T---B-HHHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSSTTGGCSEEEECTTSSEEEE-SSSHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhccccchhhhEEEEecCCcEeccCCCCcHHHHHHHH
Confidence 89999999999999999999999999999999999999999998777777778999999999999999999999999999
Q ss_pred hc--cccchhhhhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhh-hcCCCcceeeechhhhhhh
Q 003041 516 MN--GLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLN-ELDIGDYEIKLNHRLLLDG 592 (854)
Q Consensus 516 ~~--~~~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~-~Lgl~~~~i~Lnh~~ll~~ 592 (854)
++ ...|.|+||+|+|||+++++.|++|||+|+|+||||.+ ++.+|+|+|.++.++++ .+|++++.|+|||+++++.
T Consensus 81 ~~~~~~~~~r~~y~g~vfR~~~~~~g~~re~~Q~g~Eiig~~-~~~~daEvi~l~~e~l~~~l~~~~~~i~i~h~~i~~~ 159 (311)
T PF13393_consen 81 RNLNLPRPKRYYYIGPVFRYERPGKGRPREFYQCGFEIIGSS-SLEADAEVIKLADEILDRELGLENFTIRINHTGILDA 159 (311)
T ss_dssp HCCGSSSSEEEEEEEEEEEEETTTTTBESEEEEEEEEEESSS-SHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEHHHHHH
T ss_pred HhcCcCCCceEEEEcceeeccccCCCCCceeEEEEEEEECCC-CHHHHHHHHHHHHHHHHhhcCCCCcEEEEcCchhhHH
Confidence 87 46799999999999999999999999999999999986 44679999999999997 9999999999999999999
Q ss_pred hhhhcCCCccchhhhccchhhhhhhhHHHHHHHHHHhcCcceeecccccccccccCChHHHHHHHhhhcchhhccccccc
Q 003041 593 MLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLENSSAKL 672 (854)
Q Consensus 593 il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~gl~~~~~~~L~~l~~~~g~~~~vl~~l~~~~~~~~~~~~~~~ 672 (854)
+++.||+++++++.+++.+++++...+. ++....+++++..+.|..++.+.|++. .+.++.. .+..++...+
T Consensus 160 il~~~gl~~~~~~~l~~~l~~~~~~~~~----~~~~~~~l~~~~~~~l~~l~~~~g~~~-~l~~~~~---~~~~~~~~~~ 231 (311)
T PF13393_consen 160 ILEHLGLPEDLRRELLEALDKKDLSELK----ELLSELGLSSESLEILDKLPELEGDPE-ALEELLE---SLPSSPALQE 231 (311)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHTHHHHHH----HHHHHTTTTHHHHHHHHHHHHHHHSHH-HHHHHHH---HHTCSCHHHH
T ss_pred HHhhcCCChhhhhhhhhheeccccccch----hhhcccccchhhhhhhhccccccchHH-HHHHHHH---HHhhhhhhHH
Confidence 9999999999999999999877644333 445567788888888888887778874 4444332 2333344567
Q ss_pred ccchHHHHHHHhhhcc-ccceeeeeccccccCccccc----------ccccccCCcccccccccCCcccCccceehhhHH
Q 003041 673 ALDDLEILFQALEKSK-CIDKVVFDLSLARGLDYYTG----------VGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIER 741 (854)
Q Consensus 673 al~~L~~l~~~l~~~g-v~~~I~~D~sl~rgl~YYtG----------~~~Ia~GGRYD~Li~~fg~~~~pAvGfsigieR 741 (854)
++++|+.+.++++.+| ...+|.|||+++|+++|||| ..+|++|||||+|++.|| ++.|||||++++||
T Consensus 232 ~~~~L~~l~~~l~~~~~~~~~i~~D~~~~r~~~YYtG~vFe~~~~~~~~~ia~GGRYD~L~~~fg-~~~~AvGfai~ld~ 310 (311)
T PF13393_consen 232 ALEELEELLKLLEALGYPSIKIIFDLSLVRGLDYYTGIVFEVYAPGRGSPIAGGGRYDNLLEQFG-KPIPAVGFAIGLDR 310 (311)
T ss_dssp HHHHHHHHHHHHHHCTHTTTTEEEETT-GTSSTTEESEEEEEEETTSSSESEEEEEETTHHHHTT-SS-EEEEEEEEHHH
T ss_pred HHHHHHHHHHHHHHhcccCceEEEChhhccchhhcCCEEEEEEEcCCCceEecccChhHHHHHhC-CCCceEEEEEEecc
Confidence 8999999999999999 57899999999999999999 238999999999999995 68999999999999
Q ss_pred H
Q 003041 742 V 742 (854)
Q Consensus 742 L 742 (854)
|
T Consensus 311 L 311 (311)
T PF13393_consen 311 L 311 (311)
T ss_dssp H
T ss_pred C
Confidence 7
No 22
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=4e-51 Score=456.25 Aligned_cols=293 Identities=28% Similarity=0.460 Sum_probs=249.0
Q ss_pred HHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC-chhhhhhhhccCCceeeecccccchhhhhhhc-cccchhh
Q 003041 447 VREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED-SKLIYDLADQGGELCSLRYDLTVPFARYVAMN-GLTSFKR 524 (854)
Q Consensus 447 ~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~-~k~~y~~~D~~G~~l~LRpDlT~~~aR~~a~~-~~~p~K~ 524 (854)
..++++++++++|++|||.+|.||+||+.++|..++|+. .++||+|.|++|+.++||||+|+|+||.++++ ...|.|+
T Consensus 6 ~~~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~~~~~~~~f~D~~G~~l~LRpD~T~piaR~~~~~~~~~p~R~ 85 (373)
T PRK12295 6 ASAAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGEDIRRRIFVTSDENGEELCLRPDFTIPVCRRHIATAGGEPARY 85 (373)
T ss_pred hHHHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCchhhcceEEEECCCCCEEeeCCCCcHHHHHHHHHcCCCCCeEE
Confidence 456889999999999999999999999999998777765 47799999999999999999999999998874 5678999
Q ss_pred hhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhhhcCCCcceeeechhhhhhhhhhhcCCCccch
Q 003041 525 HQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIGDYEIKLNHRLLLDGMLEICGVPSEKF 604 (854)
Q Consensus 525 y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~Lgl~~~~i~Lnh~~ll~~il~~~gi~~~~~ 604 (854)
||+|+|||++ .||+|||+|+|||+||..++..+|+|||.++.++|+.+|+++++|+|||+++++++++.++++++++
T Consensus 86 ~Y~g~VfR~~---~gr~rEf~Q~GvEiiG~~~~~~aDaEvi~l~~~~L~~lgl~~~~i~ig~~~il~~ll~~l~l~~~~~ 162 (373)
T PRK12295 86 AYLGEVFRQR---RDRASEFLQAGIESFGRADPAAADAEVLALALEALAALGPGDLEVRLGDVGLFAALVDALGLPPGWK 162 (373)
T ss_pred EEEccEEECC---CCCCCcceEeeEEeeCCCCCccchHHHHHHHHHHHHHcCCCceEEEeCCHHHHHHHHHHcCCCHHHH
Confidence 9999999987 6899999999999999755557899999999999999999999999999999999999999999888
Q ss_pred hhhccchhhhhhh--------------------------------------------------hHHHHHHHHHHh-----
Q 003041 605 RTICSSIDKLDKQ--------------------------------------------------SFEQIKKEMVEE----- 629 (854)
Q Consensus 605 ~~v~~~l~kl~k~--------------------------------------------------~~~~i~~~L~~~----- 629 (854)
..++..|+++|+. .+.++.+.+.+.
T Consensus 163 ~~l~~~i~kk~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~r~~~ei~~~l~~~~~~~~ 242 (373)
T PRK12295 163 RRLLRHFGRPRSLDALLARLAGPRVDPLDEHAGVLAALADEAAARALVEDLMSIAGISPVGGRSPAEIARRLLEKAALAA 242 (373)
T ss_pred HHHHHHHhccchHHHHHHhhcccccccccchhhhhhhhccchhhhhhhhhhhhhccccccccccHHHHHHHHHhhhcccc
Confidence 8899988887752 111111122111
Q ss_pred -cCcceeecccccccccccCChHHHHHHHhhhcchhhccc-ccccccchHHHHHHHhhhcccc-ceeeeeccccccCccc
Q 003041 630 -KGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLENS-SAKLALDDLEILFQALEKSKCI-DKVVFDLSLARGLDYY 706 (854)
Q Consensus 630 -~gl~~~~~~~L~~l~~~~g~~~~vl~~l~~~~~~~~~~~-~~~~al~~L~~l~~~l~~~gv~-~~I~~D~sl~rgl~YY 706 (854)
.+++.+.++.+..++.++|++.++++++... +.+++ ...+++++|+.++++++.+|+. .++.|||+++||++||
T Consensus 243 ~~~~~~~~~~~l~~l~~~~g~~~~~~~~l~~l---~~~~~~~~~~al~~L~~l~~~l~~~g~~~~~v~~D~~~vrgl~YY 319 (373)
T PRK12295 243 AARLPAEALAVLERFLAISGPPDAALAALRAL---AADAGLDLDAALDRFEARLAALAARGIDLERLRFSASFGRPLDYY 319 (373)
T ss_pred cCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH---hccChHHHHHHHHHHHHHHHHHHHcCCCcceEEEecccccCCccc
Confidence 1677777778888888999887788877642 11122 3567999999999999999986 6799999999999999
Q ss_pred cc---------c--cccccCCcccccccccCC-cccCccceehhhHHHHHH
Q 003041 707 TG---------V--GSIAAGGRYDNLIGMFGT-KQVPAVGVSLGIERVFTI 745 (854)
Q Consensus 707 tG---------~--~~Ia~GGRYD~Li~~fg~-~~~pAvGfsigieRL~~~ 745 (854)
|| . ++||+|||||+|++.||+ ++.|||||++++|||+++
T Consensus 320 TGiVFe~~~~~~~~~~I~~GGRYD~Li~~fg~~~~~pAvGfai~~drl~~~ 370 (373)
T PRK12295 320 TGFVFEIRAAGNGDPPLAGGGRYDGLLTRLGAGEPIPAVGFSIWLDRLAAL 370 (373)
T ss_pred cceEEEEEECCCCCCcccCCcCHHHHHHHhCCCCCCCeeEEEEcHHHHHhh
Confidence 99 2 379999999999999984 789999999999998653
No 23
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=100.00 E-value=6e-46 Score=398.58 Aligned_cols=243 Identities=45% Similarity=0.690 Sum_probs=211.5
Q ss_pred HHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC-chhhhhhhhccCCceeeecccccchhhhhhhccc---c
Q 003041 445 MAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED-SKLIYDLADQGGELCSLRYDLTVPFARYVAMNGL---T 520 (854)
Q Consensus 445 ~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~-~k~~y~~~D~~G~~l~LRpDlT~~~aR~~a~~~~---~ 520 (854)
+..++++++.++++|++|||++|.||+||+.++|....++. .++||+|.|++|+.++||||+|+|++|+++++.. .
T Consensus 2 ~~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~~~~~~~~~~~~~d~~g~~l~LRpd~T~~iaR~~a~~~~~~~~ 81 (261)
T cd00773 2 AALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKSGDEVSKEMYRFKDKGGRDLALRPDLTAPVARAVAENLLSLPL 81 (261)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccccccccceEEEEECCCCCEEEeCCCCcHHHHHHHHhcCccCCC
Confidence 57889999999999999999999999999999987654433 5789999999999999999999999999998644 7
Q ss_pred chhhhhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhhhcCCCcceeeechhhhhhhhhhhcCCC
Q 003041 521 SFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIGDYEIKLNHRLLLDGMLEICGVP 600 (854)
Q Consensus 521 p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~Lgl~~~~i~Lnh~~ll~~il~~~gi~ 600 (854)
|+|+||+|+|||+++++.||+|||+|+|+|+||.. +..+|+|+|.++.++++.+|++++.|+|||+++++++++.++++
T Consensus 82 p~k~~y~g~vfR~e~~~~g~~re~~Q~g~Eiig~~-~~~~daE~i~l~~~~l~~lg~~~~~i~l~~~~i~~~l~~~~~~~ 160 (261)
T cd00773 82 PLKLYYIGPVFRYERPQKGRYREFYQVGVEIIGSD-SPLADAEVIALAVEILEALGLKDFQIKINHRGILDGIAGLLEDR 160 (261)
T ss_pred CeEEEEEcCEEecCCCCCCCccceEEeceeeeCCC-ChHHHHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHhhccCCC
Confidence 99999999999999999999999999999999984 45789999999999999999999999999999999999888876
Q ss_pred ccchhhhccchhhhhhhhHHHHHHHHHHhcCcceeecccccccccccCChHHHHHHHhhhcchhhcccccccccchHHHH
Q 003041 601 SEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLENSSAKLALDDLEIL 680 (854)
Q Consensus 601 ~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~gl~~~~~~~L~~l~~~~g~~~~vl~~l~~~~~~~~~~~~~~~al~~L~~l 680 (854)
++.... +. +.+. ++++++|+.+
T Consensus 161 ~~~~~~-------------------l~---------------------------~~l~------------~~~l~~l~~l 182 (261)
T cd00773 161 EEYIER-------------------LI---------------------------DKLD------------KEALAHLEKL 182 (261)
T ss_pred HHHHHH-------------------HH---------------------------HHhh------------HHHHHHHHHH
Confidence 422111 11 0110 0366788889
Q ss_pred HHHhhhccccceeeeeccccccCccccc---------c---cccccCCcccccccccCCcccCccceehhhHHHHHHH
Q 003041 681 FQALEKSKCIDKVVFDLSLARGLDYYTG---------V---GSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIM 746 (854)
Q Consensus 681 ~~~l~~~gv~~~I~~D~sl~rgl~YYtG---------~---~~Ia~GGRYD~Li~~fg~~~~pAvGfsigieRL~~~L 746 (854)
+++++.+|+..+|.|||+++|+++|||| . .+|++|||||+|++.|++.+.|||||++++|||+.++
T Consensus 183 ~~~l~~~~~~~~i~~d~~~~r~~~YYtG~vF~~~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~avGfa~~~d~l~~~~ 260 (261)
T cd00773 183 LDYLEALGVDIKYSIDLSLVRGLDYYTGIVFEAVADGLGAQGSIAGGGRYDGLLEEFGGEDVPAVGFAIGLERLLLAL 260 (261)
T ss_pred HHHHHHcCCCceEEEcCccccCCcccCceEEEEEECCCCccCeEeeccCHHHHHHHhCCCCCCeEEEEEcHHHHHHhh
Confidence 9999999987789999999999999999 2 3799999999999998767899999999999998765
No 24
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=7.7e-45 Score=391.73 Aligned_cols=265 Identities=20% Similarity=0.319 Sum_probs=207.3
Q ss_pred CCCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhhhccCCceeeecccccch
Q 003041 431 PKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPF 510 (854)
Q Consensus 431 ~~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D~~G~~l~LRpDlT~~~ 510 (854)
.++|+|++|++|.++..++++++.++++|++|||++|.||+||+.+++.. ...++||+|.|++|+.++||||+|+|+
T Consensus 5 ~~~p~G~rD~lp~e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~---~~~~~~y~~~D~~g~~l~LRpD~T~~i 81 (281)
T PRK12293 5 HEIPQGSKLYFGKSAKLKREIENVASEILYENGFEEIVTPFFSYHQHQSI---ADEKELIRFSDEKNHQISLRADSTLDV 81 (281)
T ss_pred CCCCCcccccCcHHHHHHHHHHHHHHHHHHHcCCeEeeccceeehhhhcc---cchhceEEEECCCCCEEEECCcCCHHH
Confidence 57899999999999999999999999999999999999999999998732 345789999999999999999999999
Q ss_pred hhhhhhc---cccchhhhhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhhhcCCCcceeeechh
Q 003041 511 ARYVAMN---GLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIGDYEIKLNHR 587 (854)
Q Consensus 511 aR~~a~~---~~~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~Lgl~~~~i~Lnh~ 587 (854)
||+++++ ...|.|+||+|+|||+++ |||+|+|+|+||..+. +|+|.++.++|+.+|++ +.|+|||+
T Consensus 82 aR~~a~~~~~~~~p~r~~Y~g~vfR~~~------rEf~Q~GvEliG~~~~----~Evi~la~~~l~~lgl~-~~i~ig~~ 150 (281)
T PRK12293 82 VRIVTKRLGRSTEHKKWFYIQPVFRYPS------NEIYQIGAELIGEEDL----SEILNIAAEIFEELELE-PILQISNI 150 (281)
T ss_pred HHHHHHhcccCCCceeEEEeccEEecCC------CcccccCeEeeCCCCH----HHHHHHHHHHHHHcCCC-CEEEECCH
Confidence 9999875 245899999999999863 8999999999998542 69999999999999996 68999999
Q ss_pred hhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHHHHHHHhcCcceeecccccccccccCChHHHHHHHhhhcchhhcc
Q 003041 588 LLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLEN 667 (854)
Q Consensus 588 ~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~gl~~~~~~~L~~l~~~~g~~~~vl~~l~~~~~~~~~~ 667 (854)
++++++++.++++.+++... ..+++ .+ +..+.+.+++...| + +.++++... . +
T Consensus 151 ~i~~~~l~~~~~~~~~~~~~----------~~~~~----~~------~~~~~l~~l~~~~~-~-~~~~~~~~~----~-~ 203 (281)
T PRK12293 151 KIPKLVAEILGLDIEVFKKG----------QIEKL----LA------QNVPWLNKLVRIKT-L-EDLDEVIEL----V-P 203 (281)
T ss_pred HHHHHHHHHcCCCHHHHhHH----------HHHHH----HH------HhHHHHHHHHhcCC-H-HHHHHHHhh----C-C
Confidence 99999999999987554211 11111 10 00122223333323 2 223333211 1 1
Q ss_pred cccccccchHHHHHHHhhhccccceeeeeccccccCccccc-------cc-ccccCCcccccccccCCcccCccceehhh
Q 003041 668 SSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG-------VG-SIAAGGRYDNLIGMFGTKQVPAVGVSLGI 739 (854)
Q Consensus 668 ~~~~~al~~L~~l~~~l~~~gv~~~I~~D~sl~rgl~YYtG-------~~-~Ia~GGRYD~Li~~fg~~~~pAvGfsigi 739 (854)
..+.++|+.+.+.++.++.. .+.|||+++||++|||| .+ +|++|||||. .+.||||||+++
T Consensus 204 ---~~~~~~l~~l~~~l~~l~~~-~~~~Dl~~vrgl~YYTGivFe~~~~~~~i~~GGRYD~-------~~~PAvGfa~~l 272 (281)
T PRK12293 204 ---DEIKEELEKLKELAESIKYE-NLVIAPLYYAKMRYYDDLFFRFFDGNSTLASGGNYEI-------DGISSSGFALYT 272 (281)
T ss_pred ---HHHHHHHHHHHHHHHHcCCC-cEEEccccccCCCCccceEEEEEECCceeccccCCCC-------CCCCcceEEeeH
Confidence 23445566666666666653 49999999999999999 23 6999999993 468999999999
Q ss_pred HHHHHHHH
Q 003041 740 ERVFTIME 747 (854)
Q Consensus 740 eRL~~~L~ 747 (854)
|||+.+|.
T Consensus 273 d~l~~~l~ 280 (281)
T PRK12293 273 DNLIEILL 280 (281)
T ss_pred HHHHHHhh
Confidence 99988763
No 25
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-42 Score=381.54 Aligned_cols=366 Identities=25% Similarity=0.365 Sum_probs=291.5
Q ss_pred CCCCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC-chhhhhhhhccCCceeeeccccc
Q 003041 430 LPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED-SKLIYDLADQGGELCSLRYDLTV 508 (854)
Q Consensus 430 ~~~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~-~k~~y~~~D~~G~~l~LRpDlT~ 508 (854)
+.++|.|++|.+|.++..++.+++.+...|.+|||+.|+||++||++++....|+. .+++|++.|+.|+.++||||+|+
T Consensus 2 ~~~lp~g~rd~Lp~e~~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~~l~~~~f~l~d~~g~~l~LRpD~T~ 81 (390)
T COG3705 2 TWQLPEGIRDVLPLEARRKEEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGEDLRRRLFKLEDETGGRLGLRPDFTI 81 (390)
T ss_pred CCcCCCcchhcchhHHhhHHHHHHHHHHHHHHhCCccccccccchhhhhhhccchhhhhhheEEecCCCCeEEecccccH
Confidence 46899999999999999999999999999999999999999999999998766776 57899999999999999999999
Q ss_pred chhhhhhhcc-ccchhhhhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhhhcCCCcceeeechh
Q 003041 509 PFARYVAMNG-LTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIGDYEIKLNHR 587 (854)
Q Consensus 509 ~~aR~~a~~~-~~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~Lgl~~~~i~Lnh~ 587 (854)
|++|.+++.. ..|.|+||.|+|||..+...|+..||+|+|+|++|. ++..+|+|||.++..+++.+|+.++.|.|||.
T Consensus 82 pVaR~~~~~~~~~P~Rl~Y~G~Vfr~~~~~~g~~~Ef~QaGiEllG~-~~~~ADaEvi~la~~~L~~~gl~~~~l~LG~~ 160 (390)
T COG3705 82 PVARIHATLLAGTPLRLSYAGKVFRAREGRHGRRAEFLQAGIELLGD-DSAAADAEVIALALAALKALGLADLKLELGHA 160 (390)
T ss_pred HHHHHHHHhcCCCCceeeecchhhhcchhccCcccchhhhhhHHhCC-CcchhhHHHHHHHHHHHHHcCCcCeEEEeccH
Confidence 9999999753 379999999999998755678888999999999998 56789999999999999999999999999999
Q ss_pred hhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHHHHHHHhcCcceeecccccccccccCChHHHHHHHhhhcchhhcc
Q 003041 588 LLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLEN 667 (854)
Q Consensus 588 ~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~gl~~~~~~~L~~l~~~~g~~~~vl~~l~~~~~~~~~~ 667 (854)
+++++++..++++...+..+.+++.++|....+. +....+++++..+.+..++.++|.+ +++.++... ...
T Consensus 161 gif~all~~~~l~~~~~~~L~~a~~~k~~~~~~~----~~~~~~~~~~~~~~l~~l~~l~gg~-e~l~~~~~~----l~~ 231 (390)
T COG3705 161 GIFRALLAAAGLPGGWRARLRRAFGDKDLLGLEL----LVLAAPLSPELRGRLSELLALLGGR-EVLERARGL----LDE 231 (390)
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHhccchhhHHH----HhhccCCChhhhHHHHHHHHHhCCH-HHHHHHHHh----hhh
Confidence 9999999999999888888888888877544433 3333466777778888889999998 555555431 111
Q ss_pred ccc-ccccchHHHHHHHhhhccccceeeeeccccccCccccc----------ccccccCCcccccccccCCcccCcccee
Q 003041 668 SSA-KLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG----------VGSIAAGGRYDNLIGMFGTKQVPAVGVS 736 (854)
Q Consensus 668 ~~~-~~al~~L~~l~~~l~~~gv~~~I~~D~sl~rgl~YYtG----------~~~Ia~GGRYD~Li~~fg~~~~pAvGfs 736 (854)
... ..++++++.+.+....++ .++.+|++.+++.+|||| ..++++|||||++.+.|+. ..|++||+
T Consensus 232 ~~~~~~al~~~~~l~di~~~~~--e~i~lDLg~l~~~~YyTg~~F~ay~~~~~~al~~GGRYd~l~~~f~~-~~patGf~ 308 (390)
T COG3705 232 LMAQGIALNEGRALADIARRLI--EKIALDLGRLRHFDYYTGLVFLAYADGLGDALASGGRYDGLLGLFGR-AAPATGFA 308 (390)
T ss_pred hhhhhhhhhhhhhHHHHHhccc--hhheehhhcccccchhhceeeeeeeccccchhhcccchhhhhhhcCc-cccchhhH
Confidence 111 457788888888888854 479999999999999999 2489999999999999986 67999999
Q ss_pred hhhHHHHHHHHHHHHhhhhccccchhhhhhhhcCC-CccchHHHHHHHhhhccceeeeehhhHHHHHhhhhcCCCceEEE
Q 003041 737 LGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVI 815 (854)
Q Consensus 737 igieRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~~~~l~k~l~~A~~~gi~~ivi 815 (854)
+.+|.|....... ...+.++.+....+ ....+.++++.++.+|=.+-+.. +...-..+...++.+.++
T Consensus 309 ~~l~~l~~~~~~~--------~~~~~~~~f~~~~~~~~~~~~e~~~~~r~~g~~~~~~l---~~g~~~~~~~~~~~~~~~ 377 (390)
T COG3705 309 LRLDALAQGGLPL--------EERRYAALFGRELDYYTGAAFEAAQALRLAGGGRYDRL---LTGLGASEEIPGVGFSLW 377 (390)
T ss_pred hhHHHHHhcCCCc--------ccchhhhccCccchhhHHHHHHHHHHhcccCCeEEEec---ccccchHhhhcccceeEe
Confidence 9999997621110 11234555544443 34678899999995543222222 122223445566777776
Q ss_pred eecc
Q 003041 816 VGER 819 (854)
Q Consensus 816 Ig~~ 819 (854)
+...
T Consensus 378 ~~~~ 381 (390)
T COG3705 378 LDRG 381 (390)
T ss_pred eccc
Confidence 6543
No 26
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=100.00 E-value=3.7e-42 Score=407.43 Aligned_cols=337 Identities=17% Similarity=0.193 Sum_probs=270.9
Q ss_pred CCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC---chhhhhhhhccCCceeeecccccc
Q 003041 433 LPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDLTVP 509 (854)
Q Consensus 433 ~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~~G~~l~LRpDlT~~ 509 (854)
.++|++||+|.++.+++.|++.++++|.++||++|.||+|++.++|.. +|++ .++||+|.|++|+.++|||+.|++
T Consensus 188 ~~~G~~~~~p~g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~-sg~~~~~~~emy~~~d~~~~~~~LrP~~~~~ 266 (563)
T TIGR00418 188 IGPGLPFWLPKGATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEI-SGHWDNYKERMFPFTELDNREFMLKPMNCPG 266 (563)
T ss_pred cCCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHh-cCCcccchhhcceeccCCCceEEEecCCCHH
Confidence 479999999999999999999999999999999999999999999976 5764 588999999999999999999999
Q ss_pred hhhhhhhcc----ccchhhhhhhhhhcccCCC----CccccccccccccccccccccCCChh---hHHHHHHHhhhcCCC
Q 003041 510 FARYVAMNG----LTSFKRHQIAKVYRRDNPS----KGRYREFYQCDFDIAGQYERMGPDFE---VVKILTELLNELDIG 578 (854)
Q Consensus 510 ~aR~~a~~~----~~p~K~y~ig~VfR~e~p~----~Gr~REf~Q~d~eiig~~~~~~aDaE---vI~l~~eil~~Lgl~ 578 (854)
++|.++.+. .+|+|+||+|+|||+|..+ .+|.|||+|.|+|+||..+. +++| ++.++.++++.||++
T Consensus 267 i~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~g~~~Gl~R~reF~q~~~~~~~~~~~--~~~e~~~~i~~~~~~~~~lgl~ 344 (563)
T TIGR00418 267 HFLIFKSSLRSYRDLPLRIAELGYSHRYEQSGELHGLMRVRGFTQDDAHIFCTEDQ--IKEEFKNQFRLIQKVYSDFGFS 344 (563)
T ss_pred HHHHHhCcCCChHHCCceeeEeccccCCCCCcCCcCcccccceEEeeeEEEcCHHH--HHHHHHHHHHHHHHHHHHcCCC
Confidence 999998753 4699999999999999543 24999999999999997543 4555 999999999999998
Q ss_pred cceeeechhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHHHHHHHhcCcceeecccccccccccCChHHHHHHHh
Q 003041 579 DYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLR 658 (854)
Q Consensus 579 ~~~i~Lnh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~gl~~~~~~~L~~l~~~~g~~~~vl~~l~ 658 (854)
.+.+.+|....- ++++ + ...|...
T Consensus 345 ~~~~~l~~~~~~----~~~~--~--------------~~~~~~~------------------------------------ 368 (563)
T TIGR00418 345 FDKYELSTRDPE----DFIG--E--------------DELWEKA------------------------------------ 368 (563)
T ss_pred eEEEEEeCCChh----hhcC--C--------------HHHHHHH------------------------------------
Confidence 888888852110 0000 0 0011110
Q ss_pred hhcchhhcccccccccchHHHHHHHhhhccccceeeeeccccccCccccc------------------ccccccCCcccc
Q 003041 659 QEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG------------------VGSIAAGGRYDN 720 (854)
Q Consensus 659 ~~~~~~~~~~~~~~al~~L~~l~~~l~~~gv~~~I~~D~sl~rgl~YYtG------------------~~~Ia~GGRYD~ 720 (854)
...+.+.|+.+|+ .+.+|+. ||++||+. +..+.+|||||.
T Consensus 369 ------------------~~~~~~~l~~~~i--~~~~~~~--~g~~y~~~~~f~~~~~lg~~~~~~t~q~~~~~g~ryd~ 426 (563)
T TIGR00418 369 ------------------EAALEEALKELGV--PYEIDPG--RGAFYGPKIDFAFKDALGREWQCATVQLDFELPERFDL 426 (563)
T ss_pred ------------------HHHHHHHHHhCCC--ceEEcCC--CcceecceEEEEeecCCCCceeeceeeeccCCHhhcCC
Confidence 0112222333343 3455555 66666654 113788999999
Q ss_pred c-ccccCCcccCcc---ceehhhHHHHHHHHHHHHhhhhccccchhhhhhhhcCC-CccchHHHHHHHhhhccceeeee-
Q 003041 721 L-IGMFGTKQVPAV---GVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMV- 794 (854)
Q Consensus 721 L-i~~fg~~~~pAv---GfsigieRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~- 794 (854)
+ +.+.|++..|++ ||++|+|||+.++.++.....+.|. +|.+|+|++.++ ....+.++++.||++||+|+++.
T Consensus 427 ~~~~~~g~~~~p~ii~~Gfa~gieRli~~l~e~~~~~~p~~~-~p~~v~vi~~~~~~~~~a~~ia~~LR~~Gi~v~~d~~ 505 (563)
T TIGR00418 427 TYVDEDNEEKRPVMIHRAILGSIERFIAILLEKYAGNFPLWL-APVQVVVIPVNERHLDYAKKVAQKLKKAGIRVDVDDR 505 (563)
T ss_pred EEECCCCCEEeeEEEEeeccCcHHHHHHHHHHhccCCCCCcC-CCceEEEEEccchHHHHHHHHHHHHHHcCCEEEEECC
Confidence 5 788888888975 9999999999998764322223343 578999999987 56789999999999999999987
Q ss_pred hhhHHHHHhhhhcCCCceEEEeecccccccceeeeccccchhhhcchhhhHHHHHHh
Q 003041 795 HKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRR 851 (854)
Q Consensus 795 ~~~l~k~l~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~ 851 (854)
+.++++++++|++.|+||+|+||++|+++|+|+||++.++++..+++++++++++++
T Consensus 506 ~~sl~~q~k~A~~~g~~~~iiiG~~E~~~~~v~vk~~~~g~q~~v~~~el~~~i~~~ 562 (563)
T TIGR00418 506 NERLGKKIREAQKQKIPYMLVVGDKEMESLAVNVRTRKGQKLEKMSLDEFLEKLRKE 562 (563)
T ss_pred CCCHHHHHHHHHhcCCCEEEEEchhhhhCCeEEEEECCCCccceeeHHHHHHHHHhh
Confidence 457999999999999999999999999999999999999999999999999998764
No 27
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.8e-42 Score=414.32 Aligned_cols=361 Identities=21% Similarity=0.283 Sum_probs=282.3
Q ss_pred CCCCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC---chhhhhhhhccCCceeeeccc
Q 003041 430 LPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDL 506 (854)
Q Consensus 430 ~~~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~~G~~l~LRpDl 506 (854)
..+.++|++||+|.++.+++++++.++++|++|||++|.||+||+.++|.. +|++ .++||.|.|++|+.++|||+.
T Consensus 255 ~~~~~~G~~~~lp~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~-~g~~~~~~~~my~~~d~~~~~~~LRP~~ 333 (638)
T PRK00413 255 FQEEAPGLPFWHPKGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWET-SGHWDHYRENMFPTTESDGEEYALKPMN 333 (638)
T ss_pred ecCCCCcceEEcccHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHh-cCChhhhhhccceeecCCCcEEEEecCC
Confidence 356779999999999999999999999999999999999999999999976 4753 478999999999999999999
Q ss_pred ccchhhhhhhc----cccchhhhhhhhhhcccCCC--C--ccccccccccccccccccccCCC-hhhHHHHHHHhhhcCC
Q 003041 507 TVPFARYVAMN----GLTSFKRHQIAKVYRRDNPS--K--GRYREFYQCDFDIAGQYERMGPD-FEVVKILTELLNELDI 577 (854)
Q Consensus 507 T~~~aR~~a~~----~~~p~K~y~ig~VfR~e~p~--~--Gr~REf~Q~d~eiig~~~~~~aD-aEvI~l~~eil~~Lgl 577 (854)
|++++|+++++ ..+|+|+||+|+|||+|+|+ . +|.|||+|+|+|+||.+++...| +|+|.++.++++.||+
T Consensus 334 ~~~~~r~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~~g~~~~~~~e~~eii~l~~~~~~~lg~ 413 (638)
T PRK00413 334 CPGHVQIYKQGLRSYRDLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHIFCTPEQIEEEVKKVIDLILDVYKDFGF 413 (638)
T ss_pred cHHHHHHHhCcCCChhhCCceeeeccCeecCCCCCCCcCcceeeeeEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999965 35699999999999999986 2 49999999999999986654446 8999999999999999
Q ss_pred CcceeeechhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHHHHHHHhcCcceeecccccccccccCChHHHHHHH
Q 003041 578 GDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKL 657 (854)
Q Consensus 578 ~~~~i~Lnh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~gl~~~~~~~L~~l~~~~g~~~~vl~~l 657 (854)
+++.+++||+ + . ..+|.++ .|. +. .+.+++.| ...|++.+..+.... ++|+.
T Consensus 414 ~~~~i~l~~r-~-~---~~~g~~~-~~~----------~~-~~~l~~~l-~~~g~~~~~~~~~~~---~~~~~------- 465 (638)
T PRK00413 414 EDYEVKLSTR-P-E---KRIGSDE-MWD----------KA-EAALKEAL-DELGLDYEIAPGEGA---FYGPK------- 465 (638)
T ss_pred ceEEEEEecC-C-c---ccCCCHH-HHH----------HH-HHHHHHHH-HHcCCCceecCCccc---cccce-------
Confidence 9999999998 2 2 2445442 111 11 12222222 334555443222211 22211
Q ss_pred hhhcchhhcccccccccchHHHHHHHhhhccccceeeeeccccccCc-ccccccccccCCcccccccccCCcccCcc---
Q 003041 658 RQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLD-YYTGVGSIAAGGRYDNLIGMFGTKQVPAV--- 733 (854)
Q Consensus 658 ~~~~~~~~~~~~~~~al~~L~~l~~~l~~~gv~~~I~~D~sl~rgl~-YYtG~~~Ia~GGRYD~Li~~fg~~~~pAv--- 733 (854)
+ ......++.++.. ..++++|+++.++++ ||||.. |+ ...|++
T Consensus 466 ------~--~~~~~~~~~~~~~----------l~~~~~d~~~~~~~dl~Yt~~~----~~-----------~~~p~~i~~ 512 (638)
T PRK00413 466 ------I--DFQLKDALGREWQ----------CGTIQLDFNLPERFDLTYVGED----GE-----------KHRPVMIHR 512 (638)
T ss_pred ------E--EEEeecCCCCeEE----------eccEeecccChhhcCCEEECCC----CC-----------ccCcEEEEe
Confidence 0 0001112222211 136889999999999 899831 22 235777
Q ss_pred ceehhhHHHHHHHHHHHHhhhhccccchhhhhhhhcCC-CccchHHHHHHHhhhccceeeee-hhhHHHHHhhhhcCCCc
Q 003041 734 GVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMV-HKKVMKLIDRARESKIP 811 (854)
Q Consensus 734 GfsigieRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~-~~~l~k~l~~A~~~gi~ 811 (854)
|+..++||++.+|.++..+..+.|. +|.||+|++.++ ...++.++++.||++||+|+++. +.++++++++|++.|+|
T Consensus 513 ~~~g~~eRli~~l~e~~~~~~p~~~-~p~~v~Ii~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~kki~~A~~~g~~ 591 (638)
T PRK00413 513 AILGSMERFIGILIEHYAGAFPTWL-APVQVVVLPITDKHADYAKEVAKKLKAAGIRVEVDLRNEKIGYKIREAQLQKVP 591 (638)
T ss_pred cceehHHHHHHHHHHHcCCCCCccc-CcceEEEEEeChhHHHHHHHHHHHHHhCCCEEEEECCCCCHhHHHHHhhccCCC
Confidence 7778999999999775433333454 578999999987 56789999999999999999988 46799999999999999
Q ss_pred eEEEeecccccccceeeeccccchhhhcchhhhHHHHHHhhc
Q 003041 812 WMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 853 (854)
Q Consensus 812 ~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~ 853 (854)
|+|+||++|+++++|+||++.++++..++++++++.|+++++
T Consensus 592 ~~iiiG~~E~~~~~v~vr~~~~~~q~~i~~~~l~~~i~~~~~ 633 (638)
T PRK00413 592 YMLVVGDKEVEAGTVSVRRRGGKDLGTMSLDEFIERLLEEIA 633 (638)
T ss_pred EEEEEcchhhhcCeEEEEECCCCccceeeHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999988765
No 28
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.6e-41 Score=396.29 Aligned_cols=455 Identities=26% Similarity=0.377 Sum_probs=325.3
Q ss_pred cccCcchhhHHHHH----------HHhccccchh-H---------hhhhhcccccCCCCCCchHHHHHHHHHHHhhcccC
Q 003041 369 VLGKGTGVIVQLIK----------DRLQSKSLGI-L---------EKWSEDLFSFFDPRDPEFDGLLTKIREIVESNESR 428 (854)
Q Consensus 369 ~~~~~~~~~~~~~~----------e~~~~~~~~~-~---------~~~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~ 428 (854)
..++...+|..|++ |||+|+.+|+ + ....+......+++++-+++-...+++...+....
T Consensus 843 ~~~~e~slI~~Ll~hdP~kRPtA~eLL~s~llppe~~el~~~~~h~~~~~~~k~~~~~~~~~~~q~~~~~~n~~yd~~~~ 922 (1351)
T KOG1035|consen 843 EHPEEASLIRWLLSHDPSKRPTATELLNSELLPPEESELLVFLQHLYIEQLGKAYKNLLQLIFEQEVLEVLNHQYDLDRL 922 (1351)
T ss_pred cchHHHHHHHHHhcCCCccCCCHHHHhhccCCCccchHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhhhhccccccccc
Confidence 45566778888888 9999999994 1 22222333446666666666655555333321110
Q ss_pred CCCCCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhhhccCCceeeeccccc
Q 003041 429 RLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTV 508 (854)
Q Consensus 429 ~~~~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D~~G~~l~LRpDlT~ 508 (854)
-..++.+....+++++.+.+.++|++||++++.||.+-+..- .-++ ..+.+.|+|++|.+++|++|++.
T Consensus 923 -------~~~~~~~~~~~l~~~v~e~~~~ifr~Hga~~l~tpp~~~~~~--~~~~--~~~~v~~ld~sG~~v~Lp~DLr~ 991 (1351)
T KOG1035|consen 923 -------SYIQYTEINNELREYVVEEVVKIFRKHGAIELETPPLSLRNA--CAYF--SRKAVELLDHSGDVVELPYDLRL 991 (1351)
T ss_pred -------cccccchhHHHHHHHHHHHHHHHHHHhcceeccCCccccccc--cchh--ccceeeeecCCCCEEEeeccccc
Confidence 235677888899999999999999999999999995544331 1112 34689999999999999999999
Q ss_pred chhhhhhhccccchhhhhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhhh-cCCCcceeeechh
Q 003041 509 PFARYVAMNGLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNE-LDIGDYEIKLNHR 587 (854)
Q Consensus 509 ~~aR~~a~~~~~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~-Lgl~~~~i~Lnh~ 587 (854)
|||||+++|....+|+|+|++|||... .. +|+|++||+|||||+..+ ..|||+|++++||+.. |.-+++.|++||.
T Consensus 992 pfar~vs~N~~~~~Kry~i~rVyr~~~-~~-hP~~~~ec~fDii~~t~s-l~~AE~L~vi~Ei~~~~l~~~n~~i~lnH~ 1068 (1351)
T KOG1035|consen 992 PFARYVSRNSVLSFKRYCISRVYRPAI-HN-HPKECLECDFDIIGPTTS-LTEAELLKVIVEITTEILHEGNCDIHLNHA 1068 (1351)
T ss_pred hHHHHhhhchHHHHHHhhhheeecccc-cC-CCccccceeeeEecCCCC-ccHHHHHHHHHHHHHHHhccCceeEEeChH
Confidence 999999999999999999999999766 45 999999999999998655 6799999999999987 5556899999999
Q ss_pred hhhhhhhhhcCCCccchhhhccchhhhhhh-hHHHHHHHHHHhcCcceeecccccccc-----cccCChHHHHHHHhhhc
Q 003041 588 LLLDGMLEICGVPSEKFRTICSSIDKLDKQ-SFEQIKKEMVEEKGLSVETADRIGTFV-----KERGSPLVLLSKLRQEG 661 (854)
Q Consensus 588 ~ll~~il~~~gi~~~~~~~v~~~l~kl~k~-~~~~i~~~L~~~~gl~~~~~~~L~~l~-----~~~g~~~~vl~~l~~~~ 661 (854)
+++++|+.+||+|+++++.|.+.+....-. .....++...-....+......|..++ ...|.+ ..++.+++.
T Consensus 1069 ~LL~Ai~~~~~i~~~~r~~v~~~l~~~~~~r~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~-~~l~~~~~~- 1146 (1351)
T KOG1035|consen 1069 DLLEAILSHCGIPKDQRRKVAELLSDMGSSRPQRSEKELKWVFIRRSSLQLAKLPEFVLNRLFLVAGRF-QALKLIRGK- 1146 (1351)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhhccccHHHHHHHHhhhhHHHHHhhhhHHHHHhhhhhhhcch-hhhHHHhhh-
Confidence 999999999999999999998776532100 000000111000111111222222222 122333 344444432
Q ss_pred chhhcccccccccchHHHHHHHhhhccccceeeeeccccccCccccc------------------ccccccCCccccccc
Q 003041 662 SLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG------------------VGSIAAGGRYDNLIG 723 (854)
Q Consensus 662 ~~~~~~~~~~~al~~L~~l~~~l~~~gv~~~I~~D~sl~rgl~YYtG------------------~~~Ia~GGRYD~Li~ 723 (854)
.......+ ++++|+.++.++..+|+...+.|+.+.. .+||.+ ...+++|||||.++.
T Consensus 1147 --~~~~~~vr-~L~eLe~~~~~~~~~~i~~~~~i~~g~~--~~~~~~~g~~~qi~a~~~~~~~~~~~~la~GgRyd~~~~ 1221 (1351)
T KOG1035|consen 1147 --LRADSLVR-ALKELENVVGLLRSLGIEEHVHIYVGPT--ESRHRNGGIQFQITAEIKSNTSGDPVLLAAGGRYDSLLQ 1221 (1351)
T ss_pred --hhhhHHHH-HHHHHHHHHHHHHHhccccceEEeeccc--eeEEcCCcEEEEEeecccCCCcCCceeeecccchHHHHH
Confidence 11122234 8999999999999999998999998844 445544 126899999999999
Q ss_pred ccCCcc----cCccceehhhHHHHHHHHHHHHhhhhccccchhhhhhhhcCC-CccchHHHHHHHhhhccceeeeeh--h
Q 003041 724 MFGTKQ----VPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVH--K 796 (854)
Q Consensus 724 ~fg~~~----~pAvGfsigieRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~~--~ 796 (854)
+|++.+ .+|+|++ ....+... ..++..+.|.+..|||+||+++. .+..+++|++.||..||+|++.++ +
T Consensus 1222 ~~~~~~~~~~p~a~gv~-~~~~~~~~---~~~~~~~~~~~~~cdvlics~g~~l~t~~~~l~~~LWs~gI~a~i~~~~s~ 1297 (1351)
T KOG1035|consen 1222 EVRDEQKMNLPGAIGVS-ALSTIRQH---APKDLEPIKTPSSCDVLICSRGSGLLTQRMELVAKLWSKGIKAEIVPDPSP 1297 (1351)
T ss_pred HhhhhhhhcCcccceeh-hhHHHHHh---hhccccCCCCcccccEEEEecCCchHHHHHHHHHHHHHcCcccceeeCCCc
Confidence 997632 2366654 11111111 12233456788899999999997 678999999999999999999985 5
Q ss_pred hHHHHHhhhhcCCCceEEEeecccccccceeeec--cccchhhhcchhhhHHHHHHhhc
Q 003041 797 KVMKLIDRARESKIPWMVIVGERELNEGIVKLKN--IDTTQEEVISRSNFVEEIQRRLN 853 (854)
Q Consensus 797 ~l~k~l~~A~~~gi~~iviIg~~e~~~g~V~Vk~--l~~~~e~~v~~~elv~~L~~~l~ 853 (854)
+.+++..||+..-+.+++++- +++.+||. ++..++..+-+.||++++.+.++
T Consensus 1298 ~~~e~~e~~~~~~i~~iliv~-----n~~~~vks~~~e~~se~~~~~~elv~f~~~~~~ 1351 (1351)
T KOG1035|consen 1298 SLEELTEYANEHEITCILIVT-----NQKEKVKSFELERKSEKVVGRTELVEFLLQALR 1351 (1351)
T ss_pred chHHHHHHHhcCceEEEEEEe-----cceeeechhHHhhhhhhhhhHHHHHHHHHHhhC
Confidence 689999999987777777765 35555555 55667888999999999988764
No 29
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=8.1e-41 Score=396.70 Aligned_cols=360 Identities=21% Similarity=0.275 Sum_probs=273.0
Q ss_pred CCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC---chhhhhhhhccCCceeeeccccc
Q 003041 432 KLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDLTV 508 (854)
Q Consensus 432 ~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~~G~~l~LRpDlT~ 508 (854)
..++|++||+|.++.+++.|++.++++|+++||++|.||+|++.++|.. +|++ .++||+|.|.+|+.++|||+.|+
T Consensus 193 ~~~~G~~~~~p~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l~~~-sg~~~~~~~~my~~~d~~~~~~~LRP~~~~ 271 (575)
T PRK12305 193 EIGPGLPVWHPKGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSDLWKT-SGHLDNYKENMFPPMEIDEEEYYLKPMNCP 271 (575)
T ss_pred ccCCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhh-cCCcccchhhcccccccCCceEEEecCCCH
Confidence 4689999999999999999999999999999999999999999999976 6764 47899999999999999999999
Q ss_pred chhhhhhhc----cccchhhhhhhhhhcccCCC----CccccccccccccccccccccCCC--hhhHHHHHHHhhhcCCC
Q 003041 509 PFARYVAMN----GLTSFKRHQIAKVYRRDNPS----KGRYREFYQCDFDIAGQYERMGPD--FEVVKILTELLNELDIG 578 (854)
Q Consensus 509 ~~aR~~a~~----~~~p~K~y~ig~VfR~e~p~----~Gr~REf~Q~d~eiig~~~~~~aD--aEvI~l~~eil~~Lgl~ 578 (854)
+++|+++++ ..+|+|+||+|+|||+|+++ .+|.|||+|+|+|+||.+++. .| +|++.++.++++.||++
T Consensus 272 ~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~if~~~~~~-~~e~~e~i~l~~~~~~~lgl~ 350 (575)
T PRK12305 272 GHILIYKSRLRSYRDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHIFCTPDQI-EDEILKVLDFVLELLKDFGFK 350 (575)
T ss_pred HHHHHHhcccCChhhCCHhhEEecccccCCCCCCCcCcccccCeEEcceEEEeCHHHH-HHHHHHHHHHHHHHHHHcCCC
Confidence 999999864 35799999999999999885 359999999999999986653 44 89999999999999998
Q ss_pred cceeeechhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHHHHHHHhcCcceeecccccccccccCChHHHHHHHh
Q 003041 579 DYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLR 658 (854)
Q Consensus 579 ~~~i~Lnh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~gl~~~~~~~L~~l~~~~g~~~~vl~~l~ 658 (854)
++.+.+|++++ +. ++|.++ .| ++ ..++++ +.++..|++...... . . .++|+.
T Consensus 351 ~~~i~l~~r~~-~~---~~g~~~-~~----------~~-~~~~l~-~~l~~~g~~~~~~~~-~-~-~~y~~~-------- 402 (575)
T PRK12305 351 DYYLELSTREP-EK---YVGDDE-VW----------EK-ATEALR-EALEELGLEYVEDPG-G-A-AFYGPK-------- 402 (575)
T ss_pred eEEEEEeCCCh-hh---ccCCHH-HH----------HH-HHHHHH-HHHHhcCCCcEecCC-C-c-cccccc--------
Confidence 89999999865 21 223211 11 00 112222 223344554431110 0 0 011110
Q ss_pred hhcchhhcccccccccchHHHHHHHhhhccccceeeeeccccccCcccccccccccCCcccc-cccccCCcccCcc---c
Q 003041 659 QEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTGVGSIAAGGRYDN-LIGMFGTKQVPAV---G 734 (854)
Q Consensus 659 ~~~~~~~~~~~~~~al~~L~~l~~~l~~~gv~~~I~~D~sl~rgl~YYtG~~~Ia~GGRYD~-Li~~fg~~~~pAv---G 734 (854)
+ ......++.+..+ + .++++|+.+ ++|||- ++...|++..|++ |
T Consensus 403 -----~--~~~~~d~~g~~~~-------~---~t~~~~~~~---------------~~~fdl~y~~~~~~~~~p~~ih~~ 450 (575)
T PRK12305 403 -----I--DVQIKDALGREWQ-------M---STIQLDFNL---------------PERFDLEYTAEDGKRQRPVMIHRA 450 (575)
T ss_pred -----E--EEEeeccCCCcee-------c---cceeeeccc---------------HhhCCCEEECCCCCccCceEEEcc
Confidence 0 0000111111111 0 234444433 355653 3444455567877 7
Q ss_pred eehhhHHHHHHHHHHHHhhhhccccchhhhhhhhcCC-CccchHHHHHHHhhhccceeeee-hhhHHHHHhhhhcCCCce
Q 003041 735 VSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMV-HKKVMKLIDRARESKIPW 812 (854)
Q Consensus 735 fsigieRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~-~~~l~k~l~~A~~~gi~~ 812 (854)
+..++||++.+|.++..+..+.|. +|.||+|+++++ ...++.++++.||++||+|+++. +.++++++++|++.|+||
T Consensus 451 ~~G~~eRl~~~l~e~~~~~~p~~~-~p~~v~Ii~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~kk~~~A~~~g~p~ 529 (575)
T PRK12305 451 LFGSIERFIGILTEHYAGAFPFWL-APVQVVIIPVADAHNEYAEEVAKKLRAAGIRVEVDTSNERLNKKIRNAQKQKIPY 529 (575)
T ss_pred ccccHHHHHHHHHHHhCCCCCCCC-CCccEEEEEeChHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHhcCCCE
Confidence 777999999999876443334453 578999999987 56789999999999999999988 457999999999999999
Q ss_pred EEEeecccccccceeeeccccchhhhcchhhhHHHHHHhhcC
Q 003041 813 MVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 854 (854)
Q Consensus 813 iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~~ 854 (854)
+|+||++|+++++|+||++.++++..++++++++.|++.+++
T Consensus 530 ~iivG~~E~~~~~v~vr~~~~~~q~~v~~~~l~~~l~~~~~~ 571 (575)
T PRK12305 530 MLVVGDKEVEAGTVSVRTRDGEQLNGMPLDEFIELIKEKIAE 571 (575)
T ss_pred EEEEechhhhCCEEEEEEcCCCceeeeeHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999887753
No 30
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2e-39 Score=388.34 Aligned_cols=337 Identities=19% Similarity=0.259 Sum_probs=271.9
Q ss_pred CCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC---chhhhhhhhccCCceeeeccccc
Q 003041 432 KLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDLTV 508 (854)
Q Consensus 432 ~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~~G~~l~LRpDlT~ 508 (854)
+..+|++||+|.+..+++.|++.+++.+.++||++|.||+|++.++|.. +|++ .++|| +.|.+|+.++|||+.|+
T Consensus 261 ~~~~G~~~~~p~g~~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l~~~-sG~~~~~~~emy-~~d~~~~~~~LrP~~~~ 338 (639)
T PRK12444 261 EEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQELWER-SGHWDHYKDNMY-FSEVDNKSFALKPMNCP 338 (639)
T ss_pred cccCcceEEeeCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhh-cCChhhhhhhcC-eecCCCcEEEEccCCCH
Confidence 4688999999999999999999999999999999999999999999976 5764 47899 88999999999999999
Q ss_pred chhhhhhhc----cccchhhhhhhhhhcccCCCC--c--cccccccccccccccccccCCCh-hhHHHHHHHhhhcCCCc
Q 003041 509 PFARYVAMN----GLTSFKRHQIAKVYRRDNPSK--G--RYREFYQCDFDIAGQYERMGPDF-EVVKILTELLNELDIGD 579 (854)
Q Consensus 509 ~~aR~~a~~----~~~p~K~y~ig~VfR~e~p~~--G--r~REf~Q~d~eiig~~~~~~aDa-EvI~l~~eil~~Lgl~~ 579 (854)
+++|++... +.+|+|+|++|+|||+|+++. | |.|||+|.|+|+||.+++..+|+ +++.++.++++.||+ +
T Consensus 339 ~~~~~~~~~~~sy~~LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~~f~~~~~~~~e~~~~~~~~~~i~~~lgl-~ 417 (639)
T PRK12444 339 GHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLFVTPDQIEDEIKSVMAQIDYVYKTFGF-E 417 (639)
T ss_pred HHHHHHhCcccChhhCCceeEEeccccCCCCCcCCcCcceeeeeEEccEEEECCHHHHHHHHHHHHHHHHHHHHHcCC-c
Confidence 999999643 357999999999999999754 6 99999999999999866533332 388999999999999 6
Q ss_pred ceeeechhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHHHHHHHhcCcceeecccccccccccCChHHHHHHHhh
Q 003041 580 YEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQ 659 (854)
Q Consensus 580 ~~i~Lnh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~gl~~~~~~~L~~l~~~~g~~~~vl~~l~~ 659 (854)
+.+.++++. -..+|- ...|......
T Consensus 418 ~~~~~~~r~-----~~~~G~----------------~e~~~~~~~~---------------------------------- 442 (639)
T PRK12444 418 YEVELSTRP-----EDSMGD----------------DELWEQAEAS---------------------------------- 442 (639)
T ss_pred EEEEEECCc-----cccCCC----------------HHHHHHHHHH----------------------------------
Confidence 888888752 011221 1123222100
Q ss_pred hcchhhcccccccccchHHHHHHHhhhccccceeeeeccccccCccccc------------ccccccCCcccc-------
Q 003041 660 EGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG------------VGSIAAGGRYDN------- 720 (854)
Q Consensus 660 ~~~~~~~~~~~~~al~~L~~l~~~l~~~gv~~~I~~D~sl~rgl~YYtG------------~~~Ia~GGRYD~------- 720 (854)
+.+.|+..|+ ++.+|++ +|. || | ....++|||||.
T Consensus 443 --------------------l~~~l~~~~~--~y~~~~~--~ga-~Y-~~~~e~~~~~~~~~~~~~~t~~~d~~~~~~f~ 496 (639)
T PRK12444 443 --------------------LENVLQSLNY--KYRLNEG--DGA-FY-GPKIDFHIKDALNRSHQCGTIQLDFQMPEKFD 496 (639)
T ss_pred --------------------HHHHHHHcCC--CceeccC--Ccc-cc-cceEEEEeecCCCChhcccceeeecccccccc
Confidence 1111222232 2444554 555 55 5 236789999999
Q ss_pred --cccccCCcccCccc---eehhhHHHHHHHHHHHHhhhhccccchhhhhhhhcCC--CccchHHHHHHHhhhccceeee
Q 003041 721 --LIGMFGTKQVPAVG---VSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD--KLPLAAELVSELWNAKVKAEYM 793 (854)
Q Consensus 721 --Li~~fg~~~~pAvG---fsigieRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~--~~~~a~~la~~Lr~~GI~ael~ 793 (854)
++...|++..|++| |..++||++.+|.++.....+.|. +|.+|+|++.++ ....+.++++.||++||+|+++
T Consensus 497 l~~~~~~g~~~~P~i~~~~~~g~ieRli~~L~e~~~~~~p~~~-ap~qV~Ii~~~~~~~~~~a~~la~~LR~~Gi~veid 575 (639)
T PRK12444 497 LNYIDEKNEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWL-APVQVKVIPVSNAVHVQYADEVADKLAQAGIRVERD 575 (639)
T ss_pred eEEECCCCCccccEEEEECCCCCHHHHHHHHHHhcCCCCCCcc-CCceEEEEEcccHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 77777888899998 778999999999775332233454 688999999886 4578999999999999999998
Q ss_pred e-hhhHHHHHhhhhcCCCceEEEeecccccccceeeeccccchhhhcchhhhHHHHHHhhc
Q 003041 794 V-HKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 853 (854)
Q Consensus 794 ~-~~~l~k~l~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~ 853 (854)
. +.++++++++|++.|+||+++||++|+++++|+||++.++++..++++++++.|+++++
T Consensus 576 ~~~~sl~kq~k~A~k~g~~~~iiiG~~E~~~~~v~vr~~~t~~q~~i~l~el~~~l~~~~~ 636 (639)
T PRK12444 576 ERDEKLGYKIREAQMQKIPYVLVIGDKEMENGAVNVRKYGEEKSEVIELDMFVESIKEEIK 636 (639)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEcchhhhcCeEEEEECCCCceeeeeHHHHHHHHHHHhh
Confidence 7 46799999999999999999999999999999999999999999999999999988765
No 31
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.9e-39 Score=373.47 Aligned_cols=354 Identities=18% Similarity=0.233 Sum_probs=276.3
Q ss_pred CCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC---chhhhhhhhccCCceeeeccccc
Q 003041 432 KLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDLTV 508 (854)
Q Consensus 432 ~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~~G~~l~LRpDlT~ 508 (854)
..++|+++|+|.++.+++.+++.++++++++||++|.||.++..++|.. +|++ .++||.+ |.+|+.++|||+.|+
T Consensus 155 ~~~~G~~~~lP~G~~i~~~L~~~~r~~~~~~Gy~eV~TP~i~~~eL~k~-SGh~~~y~~~mf~~-~~~~e~~~LrPm~cp 232 (545)
T PRK14799 155 EAGSGLVLFHPKGQTIRNELIAFMREINDSMGYQEVYTSHVFKTDIWKI-SGHYTLYRDKLIVF-NMEGDEYGVKPMNCP 232 (545)
T ss_pred ccCCcceEEcChHHHHHHHHHHHHHHHHHHcCCeEEECCccchHHHHhh-ccccccchhhccee-eccCceEEeccCCCH
Confidence 5689999999999999999999999999999999999999999999876 8887 3789988 888999999999999
Q ss_pred chhhhhhhc----cccchhhhhhhhhhcccCCCC----ccccccccccccccccccccCCCh-hhHHHHHHHhhhcCCC-
Q 003041 509 PFARYVAMN----GLTSFKRHQIAKVYRRDNPSK----GRYREFYQCDFDIAGQYERMGPDF-EVVKILTELLNELDIG- 578 (854)
Q Consensus 509 ~~aR~~a~~----~~~p~K~y~ig~VfR~e~p~~----Gr~REf~Q~d~eiig~~~~~~aDa-EvI~l~~eil~~Lgl~- 578 (854)
+++|+++.+ +.+|+|+|++|+|||+|+++. +|.|||+|+|+||||.++....|+ |++.++.++++.||++
T Consensus 233 ~~~~~~~~~~~SyrdLPlR~~e~g~vfR~E~sg~l~GL~RvReF~Q~DaHif~~~~q~~~E~~~~l~~i~~vy~~fG~~~ 312 (545)
T PRK14799 233 AHILIYKSKPRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHIFLREDQLREEIKMLISKTVEVWHKFGFKD 312 (545)
T ss_pred HHHHHHhccccChhhCCHhhEEecceecCCCCCCccccccceeEEEcccEEEeCHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 999999864 367999999999999999875 799999999999999977655676 8999999999999995
Q ss_pred -cceeeechhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHH---HHHHHHhcCcceeecccccccccccCChHHHH
Q 003041 579 -DYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQI---KKEMVEEKGLSVETADRIGTFVKERGSPLVLL 654 (854)
Q Consensus 579 -~~~i~Lnh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i---~~~L~~~~gl~~~~~~~L~~l~~~~g~~~~vl 654 (854)
++.+.++++. .+.+|.++ .|++. ..+.++..|++....+....| +|+..
T Consensus 313 ~~~~i~ls~Rp-----e~~~G~~~----------------~wdka~~~l~~~L~~~gl~~~~~~g~gaf---ygpki--- 365 (545)
T PRK14799 313 DDIKPYLSTRP-----DESIGSDE----------------LWEKATNALISALQESGLKFGIKEKEGAF---YGPKI--- 365 (545)
T ss_pred ccEEEEEEcCh-----hhhcCCHH----------------HHHHHHHHHHHHHHHcCCCeEEecceecc---ccCcc---
Confidence 5999999985 23344332 13322 223345678877665544433 33210
Q ss_pred HHHhhhcchhhcccccccccchHHHHHHHhhhccccceeeeecccccc--CcccccccccccCCcccccccccCCcccC-
Q 003041 655 SKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARG--LDYYTGVGSIAAGGRYDNLIGMFGTKQVP- 731 (854)
Q Consensus 655 ~~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~gv~~~I~~D~sl~rg--l~YYtG~~~Ia~GGRYD~Li~~fg~~~~p- 731 (854)
+.....++.+..++. ++++|+.+.+. +.|... .| .+..|
T Consensus 366 ------------D~~v~dalgr~~q~~----------Tiqldf~lp~rf~Ley~~~------~~----------~~~~pv 407 (545)
T PRK14799 366 ------------DFEIRDSLGRWWQLS----------TIQVDFNLPERFKLEYIDK------DG----------IKKRPV 407 (545)
T ss_pred ------------ceEehhhcCchhhhh----------hhhhhcCcccccceEEEcC------CC----------CCcccE
Confidence 001122333333322 45566665533 333221 11 11223
Q ss_pred --ccceehhhHHHHHHHHHHHHhhhhccccchhhhhhhhcCC-CccchHHHHHHHhhhccceeeee-hhhHHHHHhhhhc
Q 003041 732 --AVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMV-HKKVMKLIDRARE 807 (854)
Q Consensus 732 --AvGfsigieRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~-~~~l~k~l~~A~~ 807 (854)
..|+.+|+||++.+|.++..+..+.|. +|.||+|++.++ ...++.++++.||++||+|+++. +.++++++++|++
T Consensus 408 ~ihr~~~GgiERli~iL~e~~~G~~P~wl-aP~qV~Iipi~e~~~~~A~~Ia~~LR~~GirVelD~~~~~lgkkir~A~k 486 (545)
T PRK14799 408 MVHRAIYGSIDRFVAILLEHFKGKLPTWL-SSVQVRVLPITDEVNEYAEKVLNDMRKRRIRAEIDYAGETLSKRIKNAYD 486 (545)
T ss_pred EEEccCCCCHHHHHHHHHHHcCCCCCCCC-CCceEEEEEcCHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHH
Confidence 337888999999999875333334454 588999999987 56789999999999999999988 4579999999999
Q ss_pred CCCceEEEeecccccccceeeeccccchhhhcchhhhHHHHHHhhc
Q 003041 808 SKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 853 (854)
Q Consensus 808 ~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~ 853 (854)
.|+||++|||++|+++++|+||++.++++..++++++++.|.++++
T Consensus 487 ~gip~viIIG~~E~e~~~VtVR~r~~~eq~~v~l~eli~~l~~~i~ 532 (545)
T PRK14799 487 QGVPYILIVGKKEASEGTVTVRARGNIEVRNVKFEKFLELLITEIA 532 (545)
T ss_pred cCCCEEEEEChhHhhcCeEEEEECCCCceEEEcHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999987764
No 32
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.8e-37 Score=364.13 Aligned_cols=415 Identities=20% Similarity=0.211 Sum_probs=285.6
Q ss_pred cCCCCCCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC---chhhhhhhhccCCceeee
Q 003041 427 SRRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLR 503 (854)
Q Consensus 427 ~~~~~~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~~G~~l~LR 503 (854)
++++.+.++|++||+|.++.++++|++.+++.|+++||++|.||.|++.++|.. +|++ .++||+|.|++|+.++||
T Consensus 29 ag~i~~~~~G~~~~lP~g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~~~-sg~~~~~~~emf~~~d~~~~~l~Lr 107 (565)
T PRK09194 29 AGYIRKLASGIYTYLPLGLRVLRKIENIVREEMNKIGAQEVLMPALQPAELWQE-SGRWEEYGPELLRLKDRHGRDFVLG 107 (565)
T ss_pred CCCccccCCCeeEECccHHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHHhh-cCCccccchhceEEecCCCCEEEEC
Confidence 467888999999999999999999999999999999999999999999999965 6764 478999999999999999
Q ss_pred cccccchhhhhhh----ccccchhhhhhhhhhccc-CCCCc--cccccccccccccccccccCCCh---hhHHHHHHHhh
Q 003041 504 YDLTVPFARYVAM----NGLTSFKRHQIAKVYRRD-NPSKG--RYREFYQCDFDIAGQYERMGPDF---EVVKILTELLN 573 (854)
Q Consensus 504 pDlT~~~aR~~a~----~~~~p~K~y~ig~VfR~e-~p~~G--r~REf~Q~d~eiig~~~~~~aDa---EvI~l~~eil~ 573 (854)
|+.+.+++.++.. ++.+|+|+||++++||+| +|+.| |.|||+|+|+++|+.++. .+|+ +++.++.++|+
T Consensus 108 Pt~e~~~~~~~~~~~~s~~~LP~r~yqi~~~fR~E~rp~~Gl~R~reF~q~d~~~f~~~~~-~a~~~~~~~~~~~~~i~~ 186 (565)
T PRK09194 108 PTHEEVITDLVRNEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEE-SLDETYDAMYQAYSRIFD 186 (565)
T ss_pred CCChHHHHHHHHhhhhhcccCCeEEEEeeCCccCCCCCCCcccccccEEEeeEEEEcCChH-HHHHHHHHHHHHHHHHHH
Confidence 9877766655543 357899999999999999 99999 999999999999997432 3565 55677899999
Q ss_pred hcCCCcceeeechhhhhhhhhhhc-CC-Cccchhhh-----ccchhhhhh--------------------hhHHHHHHHH
Q 003041 574 ELDIGDYEIKLNHRLLLDGMLEIC-GV-PSEKFRTI-----CSSIDKLDK--------------------QSFEQIKKEM 626 (854)
Q Consensus 574 ~Lgl~~~~i~Lnh~~ll~~il~~~-gi-~~~~~~~v-----~~~l~kl~k--------------------~~~~~i~~~L 626 (854)
.||+ +|.+.+++++.+.+...+- -+ ++.....+ |....+.++ ..... ..++
T Consensus 187 ~lgl-~~~~~~~~~g~~gg~~s~e~~~~~~~g~~~~~~c~~c~~~~n~e~a~~~~~~~~~~~~~~~~v~~p~~~t-~~e~ 264 (565)
T PRK09194 187 RLGL-DFRAVEADSGAIGGSASHEFMVLADSGEDTIVYSDESDYAANIEKAEALPPPRAAAEEALEKVDTPNAKT-IEEL 264 (565)
T ss_pred HhCC-ccEEEEcccccCCCceeEEEEEecCCCceEEEEeCCCCcchhhhhhcccCCCCccccccceeecCCCCCc-HHHH
Confidence 9999 7999999999887655320 00 00011111 111000000 00000 0122
Q ss_pred HHhcCcceeec--ccc------cccccccCChHHHHHHHhhhcchhhccc-ccccccchHHHHHH----Hhhhcccc--c
Q 003041 627 VEEKGLSVETA--DRI------GTFVKERGSPLVLLSKLRQEGSLFLENS-SAKLALDDLEILFQ----ALEKSKCI--D 691 (854)
Q Consensus 627 ~~~~gl~~~~~--~~L------~~l~~~~g~~~~vl~~l~~~~~~~~~~~-~~~~al~~L~~l~~----~l~~~gv~--~ 691 (854)
....+++.... ..+ .-++.++|+..--+.++.. ..+.. .....-+++..+.. ++..+|.. -
T Consensus 265 a~~lg~~~~~~~KtLi~~~~~~~~lvvvp~d~~vn~~kl~~----~lg~~~l~~a~~eel~~~~g~~~G~v~P~Gl~~~v 340 (565)
T PRK09194 265 AEFLNVPAEKTVKTLLVKADGELVAVLVRGDHELNEVKLEN----LLGAAPLELATEEEIRAALGAVPGFLGPVGLPKDV 340 (565)
T ss_pred HHHhCCCHHHeeEEEEEEeCCeEEEEEeecchhhhHHHHHh----hcCCcccccCCHHHHHHhhCCCCCccCcccCCCCc
Confidence 22233322210 000 0011234443111223321 11110 00111123333322 33344432 2
Q ss_pred eeeeeccccccCccccc------------------------------------------------cc-ccccCCcccccc
Q 003041 692 KVVFDLSLARGLDYYTG------------------------------------------------VG-SIAAGGRYDNLI 722 (854)
Q Consensus 692 ~I~~D~sl~rgl~YYtG------------------------------------------------~~-~Ia~GGRYD~Li 722 (854)
++.+|.++....++|+| .| .+--|-+|...+
T Consensus 341 ~viiD~sl~~~~~~~~gan~~g~h~~~~~~~~d~~~~~~~d~~~~~~g~~c~~c~~~l~~~~~iEvGh~f~lG~~ys~~~ 420 (565)
T PRK09194 341 PIIADRSVADMSNFVVGANEDDYHYVGVNWGRDFPVPEVADLRNVVEGDPSPDGGGTLKIARGIEVGHIFQLGTKYSEAM 420 (565)
T ss_pred eEEEeccccccccccccCCCCCceeeCCccCcCCCcccccchhhhhcCCCCCCCCceeEEeeeEEEEEEecCCcchhhcc
Confidence 67788877655555433 11 234466676544
Q ss_pred cc-c---CCccc-Cccc-eehhhHHHHHHHHHHHHhhh-hcccc--chhhhhhhhcC---C-CccchHHHHHHHhhhccc
Q 003041 723 GM-F---GTKQV-PAVG-VSLGIERVFTIMEQIQKERN-QIIRA--TETQVLVGLLG---D-KLPLAAELVSELWNAKVK 789 (854)
Q Consensus 723 ~~-f---g~~~~-pAvG-fsigieRL~~~L~~~~~~~~-~~~~~--~~~dVlV~~~~---~-~~~~a~~la~~Lr~~GI~ 789 (854)
.. | .++.. +-.| |+||++||+.++.+++.+.. ..|++ +|++|+|++.+ + ....+.++++.||++||+
T Consensus 421 ~~~~~~~~g~~~~~~m~~~gIGv~Rli~al~e~~~d~~gl~~P~~iaP~~v~Iv~~~~~~~~~~~~a~~i~~~L~~~gi~ 500 (565)
T PRK09194 421 NATVLDENGKAQPLIMGCYGIGVSRLVAAAIEQNHDEKGIIWPKAIAPFDVHIVPVNMKDEEVKELAEKLYAELQAAGIE 500 (565)
T ss_pred CCEEECCCCCEEeEEEeeEechHHHHHHHHHHhhccccCccCCCccCCceEEEEECCCCcHHHHHHHHHHHHHHhccCCe
Confidence 22 2 12223 3335 89999999999988754433 35665 68999999987 2 457889999999999999
Q ss_pred eeeee-hhhHHHHHhhhhcCCCceEEEeecccccccceeeeccccchhhhcchhhhHHHHH
Q 003041 790 AEYMV-HKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQ 849 (854)
Q Consensus 790 ael~~-~~~l~k~l~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~ 849 (854)
+++++ +.++++++++|+..|+||+|+||++|+++|+|+||++.++++..|+++++++.++
T Consensus 501 v~~Ddr~~~~g~k~~~ad~~GiP~~iiiG~~e~~~~~v~v~~r~~ge~~~v~~~~l~~~i~ 561 (565)
T PRK09194 501 VLLDDRKERPGVKFADADLIGIPHRIVVGDRGLAEGIVEYKDRRTGEKEEVPVDELVEFLK 561 (565)
T ss_pred EEEECCCCCHHHHHHHHHhcCCCEEEEEcCccccCCeEEEEECCCCceEEEeHHHHHHHHH
Confidence 99987 4689999999999999999999999999999999999999999999999998875
No 33
>PLN02908 threonyl-tRNA synthetase
Probab=100.00 E-value=1.9e-36 Score=363.51 Aligned_cols=359 Identities=16% Similarity=0.184 Sum_probs=269.2
Q ss_pred CCCCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC---chhhhhhhhccCCceeeeccc
Q 003041 430 LPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDL 506 (854)
Q Consensus 430 ~~~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~~G~~l~LRpDl 506 (854)
..+.++|+++|+|.++.+++.+.+.+++.++++||++|.||.|++.++|.. +|++ .++||.| |.+++.++|||+.
T Consensus 306 ~~~~~~G~~~~lP~g~~i~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~-sGh~~~~~~~mf~~-~~~~~~~~Lrp~~ 383 (686)
T PLN02908 306 FHELSPGSCFFLPHGARIYNKLMDFIREQYWERGYDEVITPNIYNMDLWET-SGHAAHYKENMFVF-EIEKQEFGLKPMN 383 (686)
T ss_pred ecCCCCcceEEechHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhh-cCCccccchhccEE-ecCCeeEEEcCCC
Confidence 345678999999999999999999999999999999999999999999975 8886 4789998 7788999999999
Q ss_pred ccchhhhhhhc----cccchhhhhhhhhhcccCC----CCccccccccccccccccccccCCCh-hhHHHHHHHhhhcCC
Q 003041 507 TVPFARYVAMN----GLTSFKRHQIAKVYRRDNP----SKGRYREFYQCDFDIAGQYERMGPDF-EVVKILTELLNELDI 577 (854)
Q Consensus 507 T~~~aR~~a~~----~~~p~K~y~ig~VfR~e~p----~~Gr~REf~Q~d~eiig~~~~~~aDa-EvI~l~~eil~~Lgl 577 (854)
|++++++++.. +.+|+|+|++|++||+|.+ +.+|.|||+|+|+++||.++....|+ |++.++.++++.||+
T Consensus 384 ~~~~~~~~~~~~~s~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~if~~~~q~~~e~~~~l~~~~~v~~~lG~ 463 (686)
T PLN02908 384 CPGHCLMFAHRVRSYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCREDQIKDEVKGVLDFLDYVYEVFGF 463 (686)
T ss_pred cHHHHHHHhccccChhhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 99999999863 3579999999999999987 45699999999999999977666777 889999999999999
Q ss_pred CcceeeechhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHH---HHHHHhcCcceeecccccccccccCChHHHH
Q 003041 578 GDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIK---KEMVEEKGLSVETADRIGTFVKERGSPLVLL 654 (854)
Q Consensus 578 ~~~~i~Lnh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~---~~L~~~~gl~~~~~~~L~~l~~~~g~~~~vl 654 (854)
+|.+.+|++. +..+..++ .|++.. .+.++..|.+-+. +.... .++|+.
T Consensus 464 -~~~~~ls~r~--~~~~g~~~-------------------~w~~ae~~l~~~ld~~~~~~~~-~~g~~--afygpk---- 514 (686)
T PLN02908 464 -TYELKLSTRP--EKYLGDLE-------------------TWDKAEAALTEALNAFGKPWQL-NEGDG--AFYGPK---- 514 (686)
T ss_pred -cEEEEEeCCc--cccCCCHH-------------------HHHHHHHHHHHHHHHcCCCcEE-CCCce--eecccc----
Confidence 6999999985 33332211 222111 1222233322110 00000 011211
Q ss_pred HHHhhhcchhhcccccccccchHHHHHHHhhhccccceeeeeccccc--cCcccccccccccCCcccccccccCCcccCc
Q 003041 655 SKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLAR--GLDYYTGVGSIAAGGRYDNLIGMFGTKQVPA 732 (854)
Q Consensus 655 ~~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~gv~~~I~~D~sl~r--gl~YYtG~~~Ia~GGRYD~Li~~fg~~~~pA 732 (854)
. +.....++.++.++ .+++.|+.+.. +++|||-. |- ....+.+..
T Consensus 515 ---------i--d~~~~d~l~r~~~~----------~t~q~df~lp~~f~L~Y~~e~------~~------~~~~pv~ih 561 (686)
T PLN02908 515 ---------I--DITVSDALKRKFQC----------ATVQLDFQLPIRFKLSYSAED------EA------KIERPVMIH 561 (686)
T ss_pred ---------e--EEEEEeccCCEeec----------cceeecccCHhhcCCEEECCC------CC------cCCCCEEEE
Confidence 0 01122333333222 35677766543 68898731 10 000011111
Q ss_pred cceehhhHHHHHHHHHHHHhhhhccccchhhhhhhhcCC-CccchHHHHHHHhhhccceeeee-hhhHHHHHhhhhcCCC
Q 003041 733 VGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMV-HKKVMKLIDRARESKI 810 (854)
Q Consensus 733 vGfsigieRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~-~~~l~k~l~~A~~~gi 810 (854)
.....++||++.+|.++..+..+.|. +|.||+|++.++ ...++.++++.||++|++|+++. +.++++++++|++.|+
T Consensus 562 rai~GsiERli~iL~e~~~g~~p~wl-sp~qv~Vipv~~~~~~~A~~va~~LR~~Gi~vevd~~~~~l~kkir~A~~~g~ 640 (686)
T PLN02908 562 RAILGSVERMFAILLEHYAGKWPFWL-SPRQAIVVPISEKSQDYAEEVRAQLHAAGFYVDVDVTDRKIQKKVREAQLAQY 640 (686)
T ss_pred eCceEhHHHHHHHHHHHcCCCCCCCC-CCceEEEEEECHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCC
Confidence 22344999999999886433334565 478999999987 56789999999999999999987 4579999999999999
Q ss_pred ceEEEeecccccccceeeeccccchhhhcchhhhHHHHHHhhc
Q 003041 811 PWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 853 (854)
Q Consensus 811 ~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~ 853 (854)
+|+++||++|+++++|+||++.++++..++++++++.|+++.+
T Consensus 641 ~~viivG~~E~~~~~V~vr~~~~~~q~~i~l~el~~~l~~~~~ 683 (686)
T PLN02908 641 NYILVVGEAEAATGTVNVRTRDNVVHGEKKIEELLTEFKEERA 683 (686)
T ss_pred CEEEEECchHHhCCEEEEEECCCCceeeeeHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999987653
No 34
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=100.00 E-value=1.8e-35 Score=346.31 Aligned_cols=429 Identities=20% Similarity=0.225 Sum_probs=289.2
Q ss_pred CCCCCCchHHHHHHHHHHHhhcccCCCCCCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccC
Q 003041 404 FDPRDPEFDGLLTKIREIVESNESRRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYG 483 (854)
Q Consensus 404 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g 483 (854)
.+|.+.+-......++ ++++.+.++|+++|+|.+.+++++|++.+++.|.++||++|.||.|+|.++|.. +|
T Consensus 13 ~~p~~~~~~s~~ll~r-------ag~i~~~~~G~~~~lP~g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~~~-sg 84 (568)
T TIGR00409 13 ETPADAEVKSHQLLLR-------AGFIRRLGSGLYNWLPLGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQE-SG 84 (568)
T ss_pred CCCcccchhhHHHHHh-------CCCccccCCceEEECChHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHhh-cC
Confidence 4677766555444443 678889999999999999999999999999999999999999999999999965 56
Q ss_pred CC---chhhhhhhhccCCceeeecc----cccchhhhhhhccccchhhhhhhhhhccc-CCCCc--cccccccccccccc
Q 003041 484 ED---SKLIYDLADQGGELCSLRYD----LTVPFARYVAMNGLTSFKRHQIAKVYRRD-NPSKG--RYREFYQCDFDIAG 553 (854)
Q Consensus 484 ~~---~k~~y~~~D~~G~~l~LRpD----lT~~~aR~~a~~~~~p~K~y~ig~VfR~e-~p~~G--r~REf~Q~d~eiig 553 (854)
++ .++||+|.|++|+.++|||+ +|..++|++.+++.+|+|+||++++||+| +|+.| |.|||+|.|+++|+
T Consensus 85 ~~~~~~~emf~~~dr~~~~l~LrPT~Ee~~t~~~~~~i~syr~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d~~~f~ 164 (568)
T TIGR00409 85 RWDTYGPELLRLKDRKGREFVLGPTHEEVITDLARNEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFH 164 (568)
T ss_pred CCCccchhcEEEecCCCCEEEEcCCCcHHHHHHHHHHHhhccccCeEEEEeeCEeeCCCCCCCCccccccEEEEEEEEEe
Confidence 64 47899999999999999997 88778888888888999999999999999 89989 99999999999999
Q ss_pred cccccCCChhhH---HHHHHHhhhcCCCcceeeechhhhhhhhhhh-cCCCc-cchhhh-----ccc-------------
Q 003041 554 QYERMGPDFEVV---KILTELLNELDIGDYEIKLNHRLLLDGMLEI-CGVPS-EKFRTI-----CSS------------- 610 (854)
Q Consensus 554 ~~~~~~aDaEvI---~l~~eil~~Lgl~~~~i~Lnh~~ll~~il~~-~gi~~-~~~~~v-----~~~------------- 610 (854)
.++. .+|+|.. .++.++|++||+ +|.+..++++.+.+-..+ +-+.. .-...+ |+.
T Consensus 165 ~~~~-~a~~e~~~~~~~y~~if~~LgL-~~~~v~~~~g~~gg~~s~ef~~~~~~ge~~i~~c~~~~y~an~e~a~~~~~~ 242 (568)
T TIGR00409 165 SDEE-SLDATYQKMYQAYSNIFSRLGL-DFRPVQADSGAIGGSASHEFMVLAESGEDTIVYSDESDYAANIELAEALAPG 242 (568)
T ss_pred CChH-HHHHHHHHHHHHHHHHHHHhCC-cceEEEeccccCCCccceEEeEecCCCceEEEEecCcccchhhhhhcccCcc
Confidence 8532 3566665 556999999999 788888888766543321 00000 000000 000
Q ss_pred -----------hhhhhhhhHHHHHHHHHHhcCcceeecc--cc---------cccccccCChHHH-HHHHhhhcchhhcc
Q 003041 611 -----------IDKLDKQSFEQIKKEMVEEKGLSVETAD--RI---------GTFVKERGSPLVL-LSKLRQEGSLFLEN 667 (854)
Q Consensus 611 -----------l~kl~k~~~~~i~~~L~~~~gl~~~~~~--~L---------~~l~~~~g~~~~v-l~~l~~~~~~~~~~ 667 (854)
+.+-+..+. +++...++++....- .+ .-++.++|+- ++ ..++... +...
T Consensus 243 ~~~~~~~~~~~~~tp~~~ti----~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~v~~rgd~-~vn~~k~~~~---~g~~ 314 (568)
T TIGR00409 243 ERNAPTAELDKVDTPNTKTI----AELVECFNLPAEKVVKTLLVKAVDKSEPLVALLVRGDH-ELNEVKAPNL---LLVA 314 (568)
T ss_pred ccccccccceeecCCCCCcH----HHHHHHhCCCHhHeeeEEEEEecCCccceEEEEecCcc-hhhHHHHHHH---hccC
Confidence 000011111 123333343322110 00 0011245553 22 1122210 0000
Q ss_pred ccc-ccccchHHHH----HHHhhhcccc--ceeeeeccccccCcccc----------c----------------------
Q 003041 668 SSA-KLALDDLEIL----FQALEKSKCI--DKVVFDLSLARGLDYYT----------G---------------------- 708 (854)
Q Consensus 668 ~~~-~~al~~L~~l----~~~l~~~gv~--~~I~~D~sl~rgl~YYt----------G---------------------- 708 (854)
... ...-+++... ..++...|.. .++..|.++....+|-+ +
T Consensus 315 ~~~~~a~~~~~~~~~g~~~g~~gpv~~~~~~~i~~D~~~~~~~~~~~gan~~~~h~~~~~~~rd~~~~~~~d~~~~~eGd 394 (568)
T TIGR00409 315 QVLELATEEEIFQKIASGPGSLGPVNINGGIPVLIDQTVALMSDFAAGANADDKHYFNVNWDRDVAIPEVADIRKVKEGD 394 (568)
T ss_pred cccccCCHHHHHHhhCCCCCccCccccccCceEEechhhhcccccccccCCCCceeecccccccCCccccchhhhhhccC
Confidence 000 0011122211 1222222321 24455654332222211 1
Q ss_pred ----------------cc-ccccCCcccccccc-c---CCcccC-ccc-eehhhHHHHHHHHHHHHhh-hhcccc--chh
Q 003041 709 ----------------VG-SIAAGGRYDNLIGM-F---GTKQVP-AVG-VSLGIERVFTIMEQIQKER-NQIIRA--TET 762 (854)
Q Consensus 709 ----------------~~-~Ia~GGRYD~Li~~-f---g~~~~p-AvG-fsigieRL~~~L~~~~~~~-~~~~~~--~~~ 762 (854)
.| .+--|-||...+.. | .++..| -.| ++||++|++.++.+++.+. +..||+ +|+
T Consensus 395 ~cp~c~~~l~~~rgIEvGhiF~LG~kYS~~~~~~~~d~~g~~~~~~mgcyGIGvsRli~aiie~~~D~~Gl~wP~~iAP~ 474 (568)
T TIGR00409 395 PSPDGQGTLKIARGIEVGHIFQLGTKYSEALKATFLDENGKNQFMTMGCYGIGVSRLVSAIAEQHHDERGIIWPKAIAPY 474 (568)
T ss_pred CCCCCCCcccccceEEEEEeccchhhhHHhcCCEEECCCCCEEEEEEeCCcchHHHHHHHHHHHhCccCCCcCChhhCCe
Confidence 12 35567788776532 2 222232 234 7789999999998876543 456776 689
Q ss_pred hhhhhhcCC----CccchHHHHHHHhhhccceeeee-hhhHHHHHhhhhcCCCceEEEeecccccccceeeeccccchhh
Q 003041 763 QVLVGLLGD----KLPLAAELVSELWNAKVKAEYMV-HKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEE 837 (854)
Q Consensus 763 dVlV~~~~~----~~~~a~~la~~Lr~~GI~ael~~-~~~l~k~l~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~ 837 (854)
+|.|++... ..+.+.+|.+.|.++|+++.++. +.+++++|+.++..|+||.|+||++++++++|+|+++.++++.
T Consensus 475 qV~Iip~~~~~~~~~~~a~~l~~~L~~~gi~v~~DDr~~~~G~K~~dadliGiP~~i~vG~~~l~~~~Vei~~R~~~~~~ 554 (568)
T TIGR00409 475 DVVIVVMNMKDEEQQQLAEELYSELLAQGVDVLLDDRNERAGVKFADSELIGIPLRVVVGKKNLDNGEIEVKKRRNGEKQ 554 (568)
T ss_pred EEEEEEcCCChHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHhhhhcCCCEEEEECCCcccCCeEEEEEcCCCceE
Confidence 999998753 33467788999999999999987 4589999999999999999999999999999999999999999
Q ss_pred hcchhhhHHHHHH
Q 003041 838 VISRSNFVEEIQR 850 (854)
Q Consensus 838 ~v~~~elv~~L~~ 850 (854)
.|+.+++++++..
T Consensus 555 ~v~~~~l~~~i~~ 567 (568)
T TIGR00409 555 LIKKDELVECLEE 567 (568)
T ss_pred EEEHHHHHHHHhh
Confidence 9999999998764
No 35
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=3.6e-35 Score=313.58 Aligned_cols=251 Identities=20% Similarity=0.250 Sum_probs=193.5
Q ss_pred hHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC-chhhhh-hhhccCCceeeecccccchhhhhhhcccc
Q 003041 443 EQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED-SKLIYD-LADQGGELCSLRYDLTVPFARYVAMNGLT 520 (854)
Q Consensus 443 ~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~-~k~~y~-~~D~~G~~l~LRpDlT~~~aR~~a~~~~~ 520 (854)
++...++++++.++++|++|||.+|.||+||+.+++.. .++. ...+++ |.|.+|+.++||||+|+|+||+++++...
T Consensus 5 ~~~~~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~~~~-~~~~~~~~~~~~~~~~~Gr~laLRpD~T~~iAR~~a~~~~~ 83 (272)
T PRK12294 5 EQLIALKESETAFLKYFNKADYELVDFSVIEKLDWKQL-NHEDLQQMGERSFWQHEHQIYALRNDFTDQLLRYYSMYPTA 83 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeEeeCCcchhHHhhhc-cccchhhhheeeeecCCCCEEEEcCCCCHHHHHHHHhcCCC
Confidence 45667889999999999999999999999999998732 3333 233444 44669999999999999999999876555
Q ss_pred chhhhhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhhhcCCCcce-eeechhhhhhhhhhhcCC
Q 003041 521 SFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIGDYE-IKLNHRLLLDGMLEICGV 599 (854)
Q Consensus 521 p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~Lgl~~~~-i~Lnh~~ll~~il~~~gi 599 (854)
|.|+||+|+|||+++ +|+|+|+|+||.. ..+++|++.++.++++.+|..++. +.|||.++++++++.
T Consensus 84 ~~Rl~Y~g~VfR~~~-------~~~Q~GvEliG~~--~~a~~e~l~la~~~l~~~g~~~~~~i~lGh~~~~~~l~~~--- 151 (272)
T PRK12294 84 ATKVAYAGLIIRNNE-------AAVQVGIENYAPS--LANVQQSFKLFIQFIQQQLRDNVHFVVLGHYQLLDALLDK--- 151 (272)
T ss_pred CceEEEeccEeccCC-------CcceeceEEECCC--chhHHHHHHHHHHHHHHhCCCCCcEEEeccHHHHHHHHhC---
Confidence 779999999999874 3899999999953 357899999999999999776654 799999999999984
Q ss_pred CccchhhhccchhhhhhhhHHHHHHHHHHhcCcceeecccccccccccCChHHHHHHHhhhcchhhcccccccccchHHH
Q 003041 600 PSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLENSSAKLALDDLEI 679 (854)
Q Consensus 600 ~~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~gl~~~~~~~L~~l~~~~g~~~~vl~~l~~~~~~~~~~~~~~~al~~L~~ 679 (854)
.++...+++.|.++|...++++ +... ..+..++.. .+.++++++.. +.. ...+++++|+.
T Consensus 152 -~~~~~~l~~~l~~Kn~~~l~~~----l~~~-------~~l~~~l~~--~~~~~l~~a~~----l~~--~~~~~~~~L~~ 211 (272)
T PRK12294 152 -SLQTPDILSMIEERNLSGLVTY----LSTE-------HPIVQILKE--NTQQQLNVLEH----YIP--NDHPALVELKI 211 (272)
T ss_pred -HHHHHHHHHHHHhcCHHHHHHH----Hhhh-------hhHHHHHHh--chHHHHHHHHH----hhh--hhHHHHHHHHH
Confidence 3566778888888875555443 2211 011122211 22345666653 221 23568899999
Q ss_pred HHHHhhhccccceeeeeccccccCccccc----------ccccccCCcccccccccCC
Q 003041 680 LFQALEKSKCIDKVVFDLSLARGLDYYTG----------VGSIAAGGRYDNLIGMFGT 727 (854)
Q Consensus 680 l~~~l~~~gv~~~I~~D~sl~rgl~YYtG----------~~~Ia~GGRYD~Li~~fg~ 727 (854)
+.+.++..|.. .+.||++++|+++|||| .++|++|||||+|++.||.
T Consensus 212 l~~~l~~~~~~-~i~~Dl~~~r~~~YYTG~vF~~y~~~~~~~i~~GGRYD~Ll~~Fg~ 268 (272)
T PRK12294 212 WERWLHTQGYK-DIHLDITAQPPRSYYTGLFIQCHFAENESRVLTGGYYKGSIEGFGL 268 (272)
T ss_pred HHHHHHhcCCC-eEEEcccccCCCCCcCCeEEEEEECCCCCcccCCcCchhHHHhcCC
Confidence 99999988865 59999999999999999 2389999999999999974
No 36
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=99.97 E-value=5e-32 Score=310.23 Aligned_cols=372 Identities=16% Similarity=0.183 Sum_probs=245.6
Q ss_pred cCCCCCCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC---chhhhhhhhccCCceeee
Q 003041 427 SRRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLR 503 (854)
Q Consensus 427 ~~~~~~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~~G~~l~LR 503 (854)
+++..+.++|+++|+|.++.++++|++.+++.++++||++|.||.|++.++|.. +|++ .++||++.|.+++.++||
T Consensus 29 ~g~~~~~~~G~~~~lP~g~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~-sg~~~~~~~emf~~~d~~~~~~~L~ 107 (439)
T PRK12325 29 AGMIRQQAAGIYSWLPLGLKVLKKIENIVREEQNRAGAIEILMPTIQPADLWRE-SGRYDAYGKEMLRIKDRHDREMLYG 107 (439)
T ss_pred cCCccccCCceEEECCcHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhh-cCCccccchhheEEecCCCCEEEEc
Confidence 356677899999999999999999999999999999999999999999999964 5775 478999999999999999
Q ss_pred cc---cccchhhhhhh-ccccchhhhhhhhhhccc-CCCCc--cccccccccccccccc-ccc-CCChhhHHHHHHHhhh
Q 003041 504 YD---LTVPFARYVAM-NGLTSFKRHQIAKVYRRD-NPSKG--RYREFYQCDFDIAGQY-ERM-GPDFEVVKILTELLNE 574 (854)
Q Consensus 504 pD---lT~~~aR~~a~-~~~~p~K~y~ig~VfR~e-~p~~G--r~REf~Q~d~eiig~~-~~~-~aDaEvI~l~~eil~~ 574 (854)
|. .+.+++|.... ++.+|+|+|++|++||+| +|+.| |.|||+|.|.++|+.+ +.. ....+++.++.++++.
T Consensus 108 Pt~e~~~~~~~~~~~~syrdLPlrl~q~~~~fR~E~~~~~GL~R~reF~~~D~h~f~~~~~~a~~~~~~~~~~~~~i~~~ 187 (439)
T PRK12325 108 PTNEEMITDIFRSYVKSYKDLPLNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDLDEEGARHSYNRMFVAYLRTFAR 187 (439)
T ss_pred CCCcHHHHHHHHHHhhhchhhchHheEecCEecCCCCCCCCccccceEeEeccEEEeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 95 45666665553 577999999999999999 78778 9999999999999763 211 2346889999999999
Q ss_pred cCCCcceeeechhhhhhhhhh-------hcCCCccchhhhccch-hh---hhhhhHHH-HHHHHHHhcCcceeecccccc
Q 003041 575 LDIGDYEIKLNHRLLLDGMLE-------ICGVPSEKFRTICSSI-DK---LDKQSFEQ-IKKEMVEEKGLSVETADRIGT 642 (854)
Q Consensus 575 Lgl~~~~i~Lnh~~ll~~il~-------~~gi~~~~~~~v~~~l-~k---l~k~~~~~-i~~~L~~~~gl~~~~~~~L~~ 642 (854)
||+..+.+.+... -+.+... ..|-+.. -.|..- .+ -+...|+. ...+.+...+.
T Consensus 188 lgl~~~~v~~~~~-~~gg~~s~ef~~~~~~Ge~~~---~~c~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---------- 253 (439)
T PRK12325 188 LGLKAIPMRADTG-PIGGDLSHEFIILAETGESTV---FYDKDFLDLLVPGEDIDFDVADLQPIVDEWTS---------- 253 (439)
T ss_pred cCCceEEEEEccC-CCCCCcceeeEeecCCCCceE---EEcCCchhhccCCCcccCCHHHHHHHHhhhcc----------
Confidence 9997666655433 1111110 0010000 000000 00 00000100 00000000000
Q ss_pred cccccCChHHHHHHHhhhcchhhcccccccccchHHHHHHHhhhccccceeeeeccccccCcccccccccccCCcccccc
Q 003041 643 FVKERGSPLVLLSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTGVGSIAAGGRYDNLI 722 (854)
Q Consensus 643 l~~~~g~~~~vl~~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~gv~~~I~~D~sl~rgl~YYtG~~~Ia~GGRYD~Li 722 (854)
..+.. ..... ...++. ++...+.+--++.-|..|+ -|-+|..-+
T Consensus 254 ---~~~~~----~~~~~-~~~~~~---------------------~~~~~~~~~~~ievg~~~~-------lg~~ys~~f 297 (439)
T PRK12325 254 ---LYAAT----EEMHD-EAAFAA---------------------VPEERRLSARGIEVGHIFY-------FGTKYSEPM 297 (439)
T ss_pred ---cccch----hhhhc-cCCCCc---------------------CCCcceeecceEEEEeeec-------CcccccHhc
Confidence 00000 00000 000000 0000011000000011111 122221111
Q ss_pred cc-c----CCc-ccCccceehhhHHHHHHHHHHHHhhh-hcccc--chhhhhhhhcC---C-CccchHHHHHHHhhhccc
Q 003041 723 GM-F----GTK-QVPAVGVSLGIERVFTIMEQIQKERN-QIIRA--TETQVLVGLLG---D-KLPLAAELVSELWNAKVK 789 (854)
Q Consensus 723 ~~-f----g~~-~~pAvGfsigieRL~~~L~~~~~~~~-~~~~~--~~~dVlV~~~~---~-~~~~a~~la~~Lr~~GI~ 789 (854)
.. | |.+ .++-..|++|+||++.++.+++.+.. ..|+. +|.||+|++++ + ...++.++++.||++||+
T Consensus 298 ~~~y~d~~g~~~~i~~~~~GiGieRli~~l~e~~~d~~g~~~P~~iaP~qV~Iipi~~~~~~~~~~a~~i~~~L~~~Gi~ 377 (439)
T PRK12325 298 NAKVQGPDGKEVPVHMGSYGIGVSRLVAAIIEASHDDKGIIWPESVAPFKVGIINLKQGDEACDAACEKLYAALSAAGID 377 (439)
T ss_pred CCEEECCCCCEEeEEEeeeECCHHHHHHHHHHHhCccCCCcCCCCcCCeEEEEEecCCCCHHHHHHHHHHHHHHHHCCCE
Confidence 00 0 111 12233488999999999998754322 23544 58899999984 3 457899999999999999
Q ss_pred eeeee-hhhHHHHHhhhhcCCCceEEEeecccccccceeeeccccchhhhcchhhhHHHHH
Q 003041 790 AEYMV-HKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQ 849 (854)
Q Consensus 790 ael~~-~~~l~k~l~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~ 849 (854)
|+++. +.++++++++|+..|+||+|+||++|+++++|+||++.++++..++++++++.++
T Consensus 378 v~~D~~~~~lg~ki~~a~~~giP~~iiVG~~e~~~~~V~vr~r~~~~~~~v~~~el~~~i~ 438 (439)
T PRK12325 378 VLYDDTDERPGAKFATMDLIGLPWQIIVGPKGLAEGKVELKDRKTGEREELSVEAAINRLT 438 (439)
T ss_pred EEEECCCCCHhHHHHHHHHcCCCEEEEECCcccccCeEEEEEcCCCceEEEEHHHHHHHHh
Confidence 99987 4679999999999999999999999999999999999999999999999998765
No 37
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=99.95 E-value=1e-28 Score=284.81 Aligned_cols=326 Identities=18% Similarity=0.211 Sum_probs=230.1
Q ss_pred CCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC---chhhhhhhhcc----CCceeeec
Q 003041 432 KLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQG----GELCSLRY 504 (854)
Q Consensus 432 ~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~~----G~~l~LRp 504 (854)
.+++|+++|+|.+..++++|++.+++.|+++||++|.||+|++.++|....++. .++||.+.|.+ ++.++|||
T Consensus 25 ~~~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~f~v~~~g~~~~~e~l~LrP 104 (472)
T TIGR00408 25 YPVKGCYVWLPYGFKIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWITHGGLSKLDEPLALRP 104 (472)
T ss_pred cCCCceEEECcCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhhcchhhhcchhcEEEecCCCCccCCcEEEeC
Confidence 478999999999999999999999999999999999999999999987644444 57899999877 48899999
Q ss_pred ccccchhh----hhhhccccchhhhhhhhhhcccCCC---Cccccccccccccc-cccccccCCC-hhhHHHHHHHhh-h
Q 003041 505 DLTVPFAR----YVAMNGLTSFKRHQIAKVYRRDNPS---KGRYREFYQCDFDI-AGQYERMGPD-FEVVKILTELLN-E 574 (854)
Q Consensus 505 DlT~~~aR----~~a~~~~~p~K~y~ig~VfR~e~p~---~Gr~REf~Q~d~ei-ig~~~~~~aD-aEvI~l~~eil~-~ 574 (854)
+.|++++. ++.+++.+|+|+|++++|||+|.++ .+|.|||+|.|.+. +...+....+ .+++.++.+++. .
T Consensus 105 t~e~~i~~~~~~~i~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~~e~a~~e~~~~l~~y~~i~~~~ 184 (472)
T TIGR00408 105 TSETAMYPMFKKWVKSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHATAEEAEEQVLRALDIYKEFIENS 184 (472)
T ss_pred CCcHHHHHHHhccccChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999994 4445678899999999999999763 46999999999994 6554432222 246778888887 8
Q ss_pred cCCCcceeeechhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHHHHHHHhcCcceeecccccccccccCChHHHH
Q 003041 575 LDIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLL 654 (854)
Q Consensus 575 Lgl~~~~i~Lnh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~gl~~~~~~~L~~l~~~~g~~~~vl 654 (854)
||+. +.+... + .+++. .|- ....+ +..++ .+.
T Consensus 185 lglp-~~~~~~--------------~-----------------~~ek~-------~ga-~~~~~-~e~~~--~dg----- 216 (472)
T TIGR00408 185 LAIP-YFVGRK--------------P-----------------EWEKF-------AGA-EYTWA-FETIM--PDG----- 216 (472)
T ss_pred cCCe-EEEEec--------------C-----------------chhhc-------CCc-cceEE-EeEEE--cCC-----
Confidence 8874 322110 0 01100 000 00000 00000 000
Q ss_pred HHHhhhcchhhcccccccccchHHHHHHHhhhccccceee-eeccccc--cCcccccccccccCCcccccccccCCcccC
Q 003041 655 SKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVV-FDLSLAR--GLDYYTGVGSIAAGGRYDNLIGMFGTKQVP 731 (854)
Q Consensus 655 ~~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~gv~~~I~-~D~sl~r--gl~YYtG~~~Ia~GGRYD~Li~~fg~~~~p 731 (854)
+.+.+ .+++ ++..+.+ ++.| .+. .| .+..+
T Consensus 217 ------------------------------r~~q~-~t~~~Lg~~~sk~f~i~y-~~~-----~g----------~~~~~ 249 (472)
T TIGR00408 217 ------------------------------RTLQI-ATSHNLGQNFAKTFEIKF-ETP-----TG----------DKEYA 249 (472)
T ss_pred ------------------------------CEEEE-eeeecccccccHhcCCEE-ECC-----CC----------CEEee
Confidence 00000 0111 1111111 1212 110 11 11122
Q ss_pred ccceehhh-HHHHHHHHHHHHhh-hhcccc--chhhhhhhhc--CC-----CccchHHHHHHHhhhccceeeee-hhhHH
Q 003041 732 AVGVSLGI-ERVFTIMEQIQKER-NQIIRA--TETQVLVGLL--GD-----KLPLAAELVSELWNAKVKAEYMV-HKKVM 799 (854)
Q Consensus 732 AvGfsigi-eRL~~~L~~~~~~~-~~~~~~--~~~dVlV~~~--~~-----~~~~a~~la~~Lr~~GI~ael~~-~~~l~ 799 (854)
.. +++|+ +|++.+|.+.+.+. +..|++ +|.||+|+++ ++ ....+.++++.|+++||+|+++. +.+++
T Consensus 250 h~-~s~Gi~eRli~~lie~~~d~~gl~~P~~iaP~qV~Iipi~~~~~~~~~~~~~A~~l~~~Lr~~girv~lD~r~~s~g 328 (472)
T TIGR00408 250 YQ-TSYGISTRVIGALIAIHSDEKGLVLPPRVAPIQVVIIPIIFKKKENEKVMEAAREVRSRLKKAGFRVHIDDRDNRPG 328 (472)
T ss_pred EE-ccccHHHHHHHHHHHHhCCCCceeeChhhCcceEEEEEccCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHH
Confidence 22 44455 99999998754432 233444 6799999996 31 35678999999999999999987 46899
Q ss_pred HHHhhhhcCCCceEEEeecccccccceeeeccccchhhhcchhhhHHHHHHhhc
Q 003041 800 KLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 853 (854)
Q Consensus 800 k~l~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~ 853 (854)
+++++|++.|+|++|+||++|+++|+|+||++.++++..++++++++.|.+.+.
T Consensus 329 kk~k~Ae~~GvP~~IiIG~~Ele~~~V~ik~rdt~eq~~v~l~el~~~l~~~l~ 382 (472)
T TIGR00408 329 RKFYQWEIKGIPLRIEVGPNDIEKNIAVISRRDTGEKYQVSLDQLEERVVELLN 382 (472)
T ss_pred HHHHHHHHCCCCEEEEECcchhhCCeEEEEECCCCceEEEEHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998876653
No 38
>PLN02837 threonine-tRNA ligase
Probab=99.95 E-value=2.1e-28 Score=290.40 Aligned_cols=355 Identities=21% Similarity=0.271 Sum_probs=262.7
Q ss_pred CCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC---chhhhhhhhccCCceeeecccccc
Q 003041 433 LPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDLTVP 509 (854)
Q Consensus 433 ~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~~G~~l~LRpDlT~~ 509 (854)
...|++.|+|.++.+++.+++.+++...++||++|.||.|.+.++|.. +|++ .++||++.|.+++.++|||..++.
T Consensus 235 ~g~G~~~~~p~G~~l~~~L~~~~~~~~~~~G~~~v~tP~l~~~~l~~~-sGh~~~~~~~mf~~~~~~~~~y~l~p~~~p~ 313 (614)
T PLN02837 235 AGGGLVFWHPKGAIVRHIIEDSWKKMHFEHGYDLLYTPHVAKADLWKT-SGHLDFYKENMYDQMDIEDELYQLRPMNCPY 313 (614)
T ss_pred cCCcceEEechHHHHHHHHHHHHHHHHHHCCCEEEECCccCCHHHHhh-cCCcccchhhcccccCCCCceEEECCCCcHH
Confidence 467999999999999999999999999999999999999999999854 7876 478999999888999999999988
Q ss_pred hhhhhhh----ccccchhhhhhhhhhcccCCC--Cc--cccccccccccccccccccCCC-hhhHHHHHHHhhhcCCCcc
Q 003041 510 FARYVAM----NGLTSFKRHQIAKVYRRDNPS--KG--RYREFYQCDFDIAGQYERMGPD-FEVVKILTELLNELDIGDY 580 (854)
Q Consensus 510 ~aR~~a~----~~~~p~K~y~ig~VfR~e~p~--~G--r~REf~Q~d~eiig~~~~~~aD-aEvI~l~~eil~~Lgl~~~ 580 (854)
+.-++.. ++.+|+|+|++|+|||+|..+ .| |.|||+|.|.++|+.++....+ .+++.++.++++.||+..+
T Consensus 314 ~~~~~~~~~~SyrdLPlr~~~~~~~~R~E~~g~~~GL~RvreF~~~e~h~f~~~~q~~~e~~~~l~~~~~~~~~lg~~~~ 393 (614)
T PLN02837 314 HILVYKRKLHSYRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRGVLDLTEEILKQFGFSKY 393 (614)
T ss_pred HHHHHhCccCChhHCCHhhEeecccccCCCCCCCcCcccccceEECeEEEEeCHHHHHHHHHHHHHHHHHHHHHcCCCeE
Confidence 7766654 357899999999999999743 24 9999999999999987643233 3578899999999999777
Q ss_pred eeeechhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHHH---HHHHhcCcceeecccccccccccCChHHHHHHH
Q 003041 581 EIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKK---EMVEEKGLSVETADRIGTFVKERGSPLVLLSKL 657 (854)
Q Consensus 581 ~i~Lnh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~---~L~~~~gl~~~~~~~L~~l~~~~g~~~~vl~~l 657 (854)
.+.++.+. .++.|-+ ..|++... +.++..|+.......-. .++|+..+
T Consensus 394 ~~~~~t~~-----~~~~g~~----------------~~w~~~~~~l~~~l~~~~~~~~~~~g~~---afygpkid----- 444 (614)
T PLN02837 394 EINLSTRP-----EKSVGSD----------------DIWEKATTALRDALDDKGWEYKVDEGGG---AFYGPKID----- 444 (614)
T ss_pred EEEecCCc-----hhccCCH----------------HHHHHHHHHHHHHHHHcCCCceeCCCcc---cccCccee-----
Confidence 88887653 1223321 23433322 22233444332211111 12222100
Q ss_pred hhhcchhhcccccccccchHHHHHHHhhhccccceeeeeccccccCc-ccccccccccCCcccccccccCCcccCcc---
Q 003041 658 RQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLD-YYTGVGSIAAGGRYDNLIGMFGTKQVPAV--- 733 (854)
Q Consensus 658 ~~~~~~~~~~~~~~~al~~L~~l~~~l~~~gv~~~I~~D~sl~rgl~-YYtG~~~Ia~GGRYD~Li~~fg~~~~pAv--- 733 (854)
....+.+.+ .+.+ .++++|+.+...++ .|++. . |.+..|.+
T Consensus 445 -------------~~~~d~~gr------~~q~-~tiqldf~~~~~f~l~y~~~-----d----------~~~~~pv~ih~ 489 (614)
T PLN02837 445 -------------LKIEDALGR------KWQC-STIQVDFNLPERFDITYVDS-----N----------SEKKRPIMIHR 489 (614)
T ss_pred -------------eEeeccCCc------eeee-cceeEeecchhhcCcEEECC-----C----------CCccCCEEEEc
Confidence 011111111 1111 36788887765544 34441 1 11223322
Q ss_pred ceehhhHHHHHHHHHHHHhhhhccccchhhhhhhhcCC-CccchHHHHHHHhhhccceeeeehhhHHHHHhhhhcCCCce
Q 003041 734 GVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPW 812 (854)
Q Consensus 734 GfsigieRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~~~~l~k~l~~A~~~gi~~ 812 (854)
+.-.++||++.+|.++..+..|.|. +|.||+|++.++ ...++.++++.||++||+|+++.+.++++++++|++.|+||
T Consensus 490 ~~~G~~eRlia~Lie~~~g~~P~~l-aP~qV~IIpi~~~~~~~A~~Ia~~Lr~~GirVev~~~~slgkkir~A~~~gip~ 568 (614)
T PLN02837 490 AILGSLERFFGVLIEHYAGDFPLWL-APVQARVLPVTDNELEYCKEVVAKLKAKGIRAEVCHGERLPKLIRNAETQKIPL 568 (614)
T ss_pred CCccCHHHHHHHHHHHcCCCCCCCC-CCccEEEEEeChHHHHHHHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHcCCCE
Confidence 3222799999999887555455676 688999999887 66889999999999999999965678999999999999999
Q ss_pred EEEeecccccccceeeeccccchhhhcchhhhHHHHHHhhc
Q 003041 813 MVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 853 (854)
Q Consensus 813 iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~ 853 (854)
+|+||++|+++++|+||++.++++..++++++++.|+++++
T Consensus 569 ~IiIG~~E~e~~~VtVr~r~~geq~~v~~~el~~~l~~~~~ 609 (614)
T PLN02837 569 MAVVGPKEVETRTLTVRSRHGGELGTMPVDDFINRIQLAVE 609 (614)
T ss_pred EEEEcchhhhcCEEEEEECCCCceeEeeHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988765
No 39
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=3e-28 Score=281.31 Aligned_cols=354 Identities=19% Similarity=0.268 Sum_probs=273.5
Q ss_pred CCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC---chhhhhhhhccCCceeeeccccc
Q 003041 432 KLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDLTV 508 (854)
Q Consensus 432 ~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~~G~~l~LRpDlT~ 508 (854)
...+|+..|+|.++.+++.+++.++.....+||++|.||.+...++|.. +|++ .++||.+. ..++.++|||+.|+
T Consensus 207 ~~~~G~~~~~pkG~~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~~~-SGH~~~y~e~mf~~~-~~~~~~~lKpmNCp 284 (589)
T COG0441 207 EEGPGLPFWHPKGATIRNLLEDYVRTKLRSYGYQEVKTPVLADLELWEL-SGHWDNYKEDMFLTE-SDDREYALKPMNCP 284 (589)
T ss_pred ccCCcceEECCCcccHHHHHHHHHHHHHHhcCceEecCCeeeecccchh-ccchhhccccceeec-cCChhheeeeccCH
Confidence 4688999999999999999999999999999999999999999998865 7876 36788775 44499999999999
Q ss_pred chhhhhhh----ccccchhhhhhhhhhcccCCCC--c--cccccccccccccccccccCCC-hhhHHHHHHHhhhcCCCc
Q 003041 509 PFARYVAM----NGLTSFKRHQIAKVYRRDNPSK--G--RYREFYQCDFDIAGQYERMGPD-FEVVKILTELLNELDIGD 579 (854)
Q Consensus 509 ~~aR~~a~----~~~~p~K~y~ig~VfR~e~p~~--G--r~REf~Q~d~eiig~~~~~~aD-aEvI~l~~eil~~Lgl~~ 579 (854)
.++..+.. ++.+|+|++++|.|||+|.++. | |.|.|+|.|.+||+..+.+..| .+++.++.++++.||+++
T Consensus 285 gh~~ifk~~~~SYR~LP~r~~E~g~v~R~E~SGal~GL~RvR~ftqdDaHifc~~dQi~~E~~~~~~~i~~v~~~fg~~~ 364 (589)
T COG0441 285 GHILIFKSGLRSYRELPLRLAEFGYVYRYEKSGALHGLMRVRGFTQDDAHIFCTPDQIKDEFKGILELILEVYKDFGFTD 364 (589)
T ss_pred hHHHHHhcCCcceeccchhhhhcceeecccCcchhhccccccceeecccceeccHHHHHHHHHHHHHHHHHHHHhcCCce
Confidence 99998875 3578999999999999998752 4 9999999999999996665444 367888999999999988
Q ss_pred ceeeechhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHHHHHH---HhcCcceeecccccccccccCChHHHHHH
Q 003041 580 YEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMV---EEKGLSVETADRIGTFVKERGSPLVLLSK 656 (854)
Q Consensus 580 ~~i~Lnh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L~---~~~gl~~~~~~~L~~l~~~~g~~~~vl~~ 656 (854)
|.++++.+. ++.|.+ ..|+.....|. +..+++......-.. ++|+..
T Consensus 365 y~~~ls~r~------k~ig~d----------------~~W~~a~~~l~~al~~~~~~~~~~~G~~a---FyGPKi----- 414 (589)
T COG0441 365 YEVKLSTRP------KFIGSD----------------EMWDKAEAALREALKEIGVEYVEEPGEGA---FYGPKI----- 414 (589)
T ss_pred EEEEEecCC------cccCCh----------------hhhHHHHHHHHHHHHhhCceeeecCCceE---EECccc-----
Confidence 999999886 233321 23544433333 233333222100011 233321
Q ss_pred HhhhcchhhcccccccccchHHHHHHHhhhccccceeeeeccccccCc-ccccccccccCCcccccccccCCcccC---c
Q 003041 657 LRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLD-YYTGVGSIAAGGRYDNLIGMFGTKQVP---A 732 (854)
Q Consensus 657 l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~gv~~~I~~D~sl~rgl~-YYtG~~~Ia~GGRYD~Li~~fg~~~~p---A 732 (854)
.....+.|...+ -..+|++|+.+...++ .|++. .|. +..| .
T Consensus 415 -------------d~~v~Dalgr~~-------q~~TIQlDf~lpeRF~l~Yv~~----d~~-----------~~~PvmiH 459 (589)
T COG0441 415 -------------DFQVKDALGREW-------QLGTIQLDFNLPERFDLEYVDE----DGE-----------KKRPVIIH 459 (589)
T ss_pred -------------ceEEEeccCcce-------ecceEEEecCChhhceEEEEcC----CCC-----------ccCCEEEE
Confidence 111112222111 1258999999885444 45541 111 2233 4
Q ss_pred cceehhhHHHHHHHHHHHHhhhhccccchhhhhhhhcCC-CccchHHHHHHHhhhccceeeee-hhhHHHHHhhhhcCCC
Q 003041 733 VGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMV-HKKVMKLIDRARESKI 810 (854)
Q Consensus 733 vGfsigieRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~-~~~l~k~l~~A~~~gi 810 (854)
++...++||.+.+|.++..+..|.|. +|.||.|+++++ ...++.++++.|.++||||+++. +++++++++.|...++
T Consensus 460 rai~GSiERfi~iLiE~~~G~~P~WL-aPvQv~VipV~~~~~~ya~~v~~~L~~~giRvdvD~~~e~l~kKIR~a~~~ki 538 (589)
T COG0441 460 RAILGSIERFIGILLEHYAGALPTWL-APVQVRVIPVADEHLDYAKEVAEKLRKAGIRVDIDDRNEKLGKKIREAGTQKI 538 (589)
T ss_pred eccchhHHHHHHHHHHhccCCCcccC-CccEEEEEEeChHHHHHHHHHHHHHHHcCCeeeecccccchHHHHHHHHhcCC
Confidence 56667899999999998777778898 589999999997 66889999999999999999998 6889999999999999
Q ss_pred ceEEEeecccccccceeeeccccchhhhcchhhhHHHHHHhhc
Q 003041 811 PWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 853 (854)
Q Consensus 811 ~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~ 853 (854)
||+++||++|++++.|.+|.+..++...++++++++.++++.+
T Consensus 539 pyiiVvG~kE~e~~~v~vR~r~~~~~~~~~l~e~i~~ik~e~~ 581 (589)
T COG0441 539 PYVIVVGDKEVETGTVVVRRRGGKQQKSMTLEELVEELKKEIE 581 (589)
T ss_pred CEEEEEchhhhccCceEEEEccCCccccccHHHHHHHHHHHhh
Confidence 9999999999999999999999998888999999999998764
No 40
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=99.95 E-value=8.6e-28 Score=277.64 Aligned_cols=326 Identities=18% Similarity=0.222 Sum_probs=230.7
Q ss_pred CCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC---chhhhhhhhcc----CCceeeec
Q 003041 432 KLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQG----GELCSLRY 504 (854)
Q Consensus 432 ~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~~----G~~l~LRp 504 (854)
..++|+++|+|.++.+++.|++.+++.|+++||++|.||+|.+.++|...+|+. .++||.+.|.+ ++.++|||
T Consensus 31 ~~v~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~~~~~e~l~LrP 110 (477)
T PRK08661 31 SPVKGCMVIKPYGYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGGEKLEEKLALRP 110 (477)
T ss_pred CCCCceEEECccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEEEccCCCccCceEEEec
Confidence 347899999999999999999999999999999999999999999986656665 57899998876 46799999
Q ss_pred cc----ccchhhhhhhccccchhhhhhhhhhcccCCCC--ccccccccccccccc-cccccCCC-hhhHHHHHHHh-hhc
Q 003041 505 DL----TVPFARYVAMNGLTSFKRHQIAKVYRRDNPSK--GRYREFYQCDFDIAG-QYERMGPD-FEVVKILTELL-NEL 575 (854)
Q Consensus 505 Dl----T~~~aR~~a~~~~~p~K~y~ig~VfR~e~p~~--Gr~REf~Q~d~eiig-~~~~~~aD-aEvI~l~~eil-~~L 575 (854)
+. |..++|++.+++.+|+|+|++++|||+|.+.. +|.|||+|.+.+++. ..+....+ .+++.++.+++ +.|
T Consensus 111 tsE~~i~~~~~~~i~SyrdLPlrl~q~~~vfR~E~~~rgl~R~rEF~~~E~h~~~~~~eea~~e~~~~l~~y~~i~~~~L 190 (477)
T PRK08661 111 TSETIIYPMYKKWIQSYRDLPLLYNQWVNVVRWETKTRPFLRTREFLWQEGHTAHATEEEAEEETLEMLEIYKEFFEDYL 190 (477)
T ss_pred CCcHHHHHHHHhhhcchhhcCHHHhcccceeeCCCCCCCcceeeeEEEcceeeeeCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99 77788888888889999999999999997644 599999999999854 33322122 24677788888 778
Q ss_pred CCCcceeeechhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHHHHHHHhcCcceeecccccccccccCChHHHHH
Q 003041 576 DIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLS 655 (854)
Q Consensus 576 gl~~~~i~Lnh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~gl~~~~~~~L~~l~~~~g~~~~vl~ 655 (854)
|+. +.+ +.. ..|++. .|-... .+ +...+. .|..
T Consensus 191 glp-~~~--~~~-----------------------------~~~ekf-------~ga~~~-~~-ie~~~~-dgr~----- 223 (477)
T PRK08661 191 AIP-VII--GKK-----------------------------TEWEKF-------AGADYT-YT-IEAMMP-DGKA----- 223 (477)
T ss_pred CCe-EEE--Eec-----------------------------ChHHhh-------CCCcce-eE-EEEEeC-CCCE-----
Confidence 874 221 111 011110 000000 00 000000 0000
Q ss_pred HHhhhcchhhcccccccccchHHHHHHHhhhcccccee-eeeccccc--cCcccccccccccCCcccccccccCCcccCc
Q 003041 656 KLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKV-VFDLSLAR--GLDYYTGVGSIAAGGRYDNLIGMFGTKQVPA 732 (854)
Q Consensus 656 ~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~gv~~~I-~~D~sl~r--gl~YYtG~~~Ia~GGRYD~Li~~fg~~~~pA 732 (854)
+.+ .++ .++..+.+ ++.| .+. . |..+.+.
T Consensus 224 -------------------------------~q~-gt~~~Lg~~~s~~f~i~y-~d~-----~----------g~~~~v~ 255 (477)
T PRK08661 224 -------------------------------LQA-GTSHYLGQNFAKAFDIKF-QDK-----D----------GKLEYVH 255 (477)
T ss_pred -------------------------------EEE-EEecccccchhHhcCCEE-ECC-----C----------CCEeeeE
Confidence 000 011 11111111 1212 110 1 1111122
Q ss_pred c-ceehhhHHHHHHHHHHHHhh-hhcccc--chhhhhhhhc------CC-CccchHHHHHHHhhhccceeeee-h-hhHH
Q 003041 733 V-GVSLGIERVFTIMEQIQKER-NQIIRA--TETQVLVGLL------GD-KLPLAAELVSELWNAKVKAEYMV-H-KKVM 799 (854)
Q Consensus 733 v-GfsigieRL~~~L~~~~~~~-~~~~~~--~~~dVlV~~~------~~-~~~~a~~la~~Lr~~GI~ael~~-~-~~l~ 799 (854)
. .++++ +|++.++.+.+.+. +..|++ +|.||+|+++ ++ ....+.++++.||++||+|+++. . .+++
T Consensus 256 ~~s~G~~-~R~i~alie~~~D~~Gl~lP~~iAP~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~GirV~lD~r~~~s~g 334 (477)
T PRK08661 256 QTSWGVS-TRLIGALIMTHGDDKGLVLPPKIAPIQVVIVPIFKKEEKKEEVLEYAKELAEELKKAGIRVKLDDRSDKTPG 334 (477)
T ss_pred EecccHH-HHHHHHHHHHhCccCCCccCcccCCCeEEEEEecCCCcCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHH
Confidence 2 23344 99999998865543 233554 4789999998 33 45679999999999999999987 3 6899
Q ss_pred HHHhhhhcCCCceEEEeecccccccceeeeccccchhhhcchhhhHHHHHHhhc
Q 003041 800 KLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 853 (854)
Q Consensus 800 k~l~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~ 853 (854)
+++++|++.|+|++|+||++|+++++|+||++.++++..++++++++.++..+.
T Consensus 335 kK~~~ae~~GvP~~IiIG~~ele~~~V~ik~rdtgek~~v~~~el~~~l~~~l~ 388 (477)
T PRK08661 335 WKFNEWELKGVPLRIEIGPRDLENNTVVLVRRDTLEKETVPLDELVEKVPELLE 388 (477)
T ss_pred HHHHHHHHCCCCEEEEECcchhhcCeEEEEECCCCceEEEEHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998876653
No 41
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=99.94 E-value=1.8e-27 Score=272.83 Aligned_cols=322 Identities=19% Similarity=0.204 Sum_probs=221.1
Q ss_pred CCCccchhhHHhHHHHHHHhHHHHHHHHHh--cCccccCcchhHhHHhhhhccCCC---chhhhhhh--------hc---
Q 003041 432 KLPKGTRDFAKEQMAVREKAFSIITEVFKR--HGAMALDTPVFEMRETLMGKYGED---SKLIYDLA--------DQ--- 495 (854)
Q Consensus 432 ~~p~G~~D~lp~~~~~~~~i~~~l~~if~~--~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~--------D~--- 495 (854)
.-..|++||+|.++.+++.|++.+++.|.. +||.+|.||.+.+.++|.. +|++ .+.||... |.
T Consensus 25 ~~~~g~~d~~P~G~~l~~~i~~~~r~~~~~~~~~~~ev~tp~i~~~~l~~~-SGH~~~f~d~m~~~~~~~~~~r~d~~~~ 103 (456)
T PRK04173 25 GGLAGFWDYGPLGVELKNNIKRAWWKSFVQEREDVVGIDSPIIMPPEVWEA-SGHVDNFSDPLVECKKCKKRYRADHLIE 103 (456)
T ss_pred cchhcccccChhhHHHHHHHHHHHHHHHHhccCCEEEEeccccCCHHHHhh-cCCccccCCceeEeCCCCCEeechhhhH
Confidence 346899999999999999999999999987 8999999999999999965 7875 35566542 11
Q ss_pred ----------------------------------------------------cCCceeeecccccch----hhhhhhcc-
Q 003041 496 ----------------------------------------------------GGELCSLRYDLTVPF----ARYVAMNG- 518 (854)
Q Consensus 496 ----------------------------------------------------~G~~l~LRpDlT~~~----aR~~a~~~- 518 (854)
++..+.|||+....+ .+.+-+++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~m~cp~~~~~~~~~~~~f~l~f~~~~g~~~~~~~~~~lRpetaqg~~~~f~~~~~syr~ 183 (456)
T PRK04173 104 ELGIDAEGLSNEELKELIRENDIKCPECGGENWTEVRQFNLMFKTFIGPVEDSKSLGYLRPETAQGIFVNFKNVLRTARK 183 (456)
T ss_pred HHhhhhccccHHHHHHHHHHhCCCCCCCCCCCCcCccchhhceeecccCccCCCcceeeccccchhHHHHHHHHHHhccc
Confidence 011223444433322 23344455
Q ss_pred ccchhhhhhhhhhcccC-CCCc--cccccccccccccccccccCCC-hhhHHHHHHHhhhcCCCcceeeechhhhhhhhh
Q 003041 519 LTSFKRHQIAKVYRRDN-PSKG--RYREFYQCDFDIAGQYERMGPD-FEVVKILTELLNELDIGDYEIKLNHRLLLDGML 594 (854)
Q Consensus 519 ~~p~K~y~ig~VfR~e~-p~~G--r~REf~Q~d~eiig~~~~~~aD-aEvI~l~~eil~~Lgl~~~~i~Lnh~~ll~~il 594 (854)
.+|+|++++|+|||+|. +..| |.|||+|.+.++|+.++....+ ..++.++.+++..||++++.++++.+.
T Consensus 184 dLPlr~aq~g~~~RnE~s~~~gL~RvReF~q~e~hiF~~peq~~~e~~~~l~~~~~~l~~lG~~~~~~~~s~~~------ 257 (456)
T PRK04173 184 KLPFGIAQIGKSFRNEITPRNFIFRTREFEQMELEFFVKPGTDNEWFAYWIELRKNWLLDLGIDPENLRFREHL------ 257 (456)
T ss_pred cCCeeeeEEchhHhCccCCCCCceeeceeeeeEEEEEECcChHHHHHHHHHHHHHHHHHHcCCCccceEEEecC------
Confidence 89999999999999995 3345 9999999999999987643222 234566666666666654444333210
Q ss_pred hhcCCCccchhhhccchhhhhhhhHHHHHHHHHHhcCcceeecccccccccccCChHHHHHHHhhhcchhhccccccccc
Q 003041 595 EICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLENSSAKLAL 674 (854)
Q Consensus 595 ~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~gl~~~~~~~L~~l~~~~g~~~~vl~~l~~~~~~~~~~~~~~~al 674 (854)
+.+ + .++..
T Consensus 258 -------------------------------------------------------~~e----~-----~~ys~------- 266 (456)
T PRK04173 258 -------------------------------------------------------PEE----L-----AHYSK------- 266 (456)
T ss_pred -------------------------------------------------------cch----h-----hccHH-------
Confidence 000 0 00101
Q ss_pred chHHHHHHHhhhccccceeeeeccccccCcccccccccccCCccccccc--ccCC-------------cccC-ccceehh
Q 003041 675 DDLEILFQALEKSKCIDKVVFDLSLARGLDYYTGVGSIAAGGRYDNLIG--MFGT-------------KQVP-AVGVSLG 738 (854)
Q Consensus 675 ~~L~~l~~~l~~~gv~~~I~~D~sl~rgl~YYtG~~~Ia~GGRYD~Li~--~fg~-------------~~~p-AvGfsig 738 (854)
..++.. + .++ -|..| .-...+++||+|| |.. .|++ +..| .+++|+|
T Consensus 267 ----~~wd~e--------~-~~~---~g~~~-~e~~g~~~~~dyd-L~~~~~~s~~dl~y~~~~~~~~~~~P~vi~~siG 328 (456)
T PRK04173 267 ----ATWDIE--------Y-KFP---FGRFW-GELEGIANRTDYD-LSRHSKHSGEDLSYFDDETTGEKYIPYVIEPSAG 328 (456)
T ss_pred ----HHHhHH--------H-hCC---CCCcE-EEEeeeeccchhh-cccchhhcCCCeEEEecCCCCceeeeEEEEeccc
Confidence 111110 0 000 01111 0012356788888 543 2222 1134 5589999
Q ss_pred hHHHHHHH-HHHHHh------------hhhccccchhhhhhhhcCC---CccchHHHHHHHhhhccceeeeehhhHHHHH
Q 003041 739 IERVFTIM-EQIQKE------------RNQIIRATETQVLVGLLGD---KLPLAAELVSELWNAKVKAEYMVHKKVMKLI 802 (854)
Q Consensus 739 ieRL~~~L-~~~~~~------------~~~~~~~~~~dVlV~~~~~---~~~~a~~la~~Lr~~GI~ael~~~~~l~k~l 802 (854)
+||++.++ .+...+ .-|.|. +|.+|+|++.++ ....+.++++.||++ |+|+++...++++++
T Consensus 329 ieRl~~ail~~~~~~~~~~~~~~r~~l~~P~~l-AP~qV~Iipi~~~~e~~~~A~~la~~LR~~-irVelD~~~slgkki 406 (456)
T PRK04173 329 LDRLLLAFLEDAYTEEELGGGDKRTVLRLPPAL-APVKVAVLPLVKKEKLSEKAREIYAELRKD-FNVDYDDSGSIGKRY 406 (456)
T ss_pred HHHHHHHHHHHHcccccccCCcceeEEECCCcC-CCCEEEEEEecCcHHHHHHHHHHHHHHHhc-CEEEEeCCCCHHHHH
Confidence 99965555 443222 122333 589999999876 457899999999999 999998656799999
Q ss_pred hhhhcCCCceEEEeecccccccceeeeccccchhhhcchhhhHHHHHHh
Q 003041 803 DRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRR 851 (854)
Q Consensus 803 ~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~ 851 (854)
++|++.|+||+|+||++|+++++|+||++.++++..++++++++.|++.
T Consensus 407 r~A~~~Gip~~IIIG~~El~~g~VtvR~r~t~eq~~v~l~el~~~l~~~ 455 (456)
T PRK04173 407 RRQDEIGTPFCITVDFDTLEDNTVTIRDRDTMEQVRVKIDELKDYLAEK 455 (456)
T ss_pred HHHHHcCCCEEEEECCchhhCCEEEEEECCCCceEEEeHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999988764
No 42
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=99.94 E-value=3.3e-27 Score=277.96 Aligned_cols=371 Identities=16% Similarity=0.208 Sum_probs=257.8
Q ss_pred CCchHHHHHHHHHHHhhcccCCCCCCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC--
Q 003041 408 DPEFDGLLTKIREIVESNESRRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED-- 485 (854)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~-- 485 (854)
.|+|.++..++. +. .+-.....|+.-|+|.+..+++.|++.+++.+.++||++|.||.+...++|.. +|+.
T Consensus 196 ~~dH~~Lg~~~~-L~-----d~~~~s~~G~~~~~P~G~~i~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~~~-sgh~~~ 268 (613)
T PRK03991 196 EPPHVKLMREKE-LA-----DYEPASDVGHMRYYPKGRLIRDLLEDYVYNLVVELGAMPVETPIMYDLSHPAI-REHADK 268 (613)
T ss_pred CCCHHHHHHHCC-Cc-----ccccccCeeeEEEEcHHHHHHHHHHHHHHHHHHHCCCEEEECCeecChhHHhh-cccccc
Confidence 467777766531 00 11123457999999999999999999999999999999999999977776643 4543
Q ss_pred -chhhhhhhhccCCceeeecccccchhhhhhh----ccccchhhhhhhh-hhcccCCC--Cc--cccccccccccccccc
Q 003041 486 -SKLIYDLADQGGELCSLRYDLTVPFARYVAM----NGLTSFKRHQIAK-VYRRDNPS--KG--RYREFYQCDFDIAGQY 555 (854)
Q Consensus 486 -~k~~y~~~D~~G~~l~LRpDlT~~~aR~~a~----~~~~p~K~y~ig~-VfR~e~p~--~G--r~REf~Q~d~eiig~~ 555 (854)
..+||.+ +.+++.++|||..++++.-.+.. ++.+|+|+|++|+ +||+|.++ .| |.|||+|.|.++|+.+
T Consensus 269 f~e~my~v-~~~~e~l~Lrp~~c~~~~~~~~~~~~SyrdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~~ 347 (613)
T PRK03991 269 FGERQYRV-KSDKKDLMLRFAACFGQFLMLKDMTISYKNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCKD 347 (613)
T ss_pred cchhceEe-cCCCceEEEecCCCHHHHHHHhCCcCchhhCChhhheecchheeCCCCCCCcCcccccceEeeeEEEEECC
Confidence 4689987 45568899999999998866653 4568999999999 99999764 24 9999999999999984
Q ss_pred -cccCCC-hhhHHHHHHHhhhcCCCcceeeechhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHHHHHHHhcCcc
Q 003041 556 -ERMGPD-FEVVKILTELLNELDIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLS 633 (854)
Q Consensus 556 -~~~~aD-aEvI~l~~eil~~Lgl~~~~i~Lnh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~gl~ 633 (854)
+....+ .+++.++.++++.||+. +.+.++.++ +-+.. .+....++++..|++
T Consensus 348 ~eqa~~e~~~~l~~~~~i~~~lGl~-~~~~~~~t~-------------df~~~------------~~~~l~~~l~~~g~~ 401 (613)
T PRK03991 348 MEQAMEEFEKQYEMILETGEDLGRD-YEVAIRFTE-------------DFYEE------------NKDWIVELVKREGKP 401 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC-eEEEecCHH-------------HHhhh------------HHHHHHHHHHHcCCC
Confidence 433223 35688999999999994 777665331 00000 011123344444543
Q ss_pred eeecccccccccccCChHHHHHHHhhhcchhhcccccccccchHHHHHHHhhhccccceeeeeccccccCc-cccccccc
Q 003041 634 VETADRIGTFVKERGSPLVLLSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLD-YYTGVGSI 712 (854)
Q Consensus 634 ~~~~~~L~~l~~~~g~~~~vl~~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~gv~~~I~~D~sl~rgl~-YYtG~~~I 712 (854)
.... . ..|.. .++.........+.+.+ .+.+ .++++|+.....++ .|.+.
T Consensus 402 ~~~~-----~--~~g~~------------~~yg~kie~~~~d~~gr------~~q~-~T~qld~~~~~~f~l~y~d~--- 452 (613)
T PRK03991 402 VLLE-----I--LPERK------------HYWVLKVEFAFIDSLGR------PIEN-PTVQIDVENAERFGIKYVDE--- 452 (613)
T ss_pred EEec-----c--cCCcc------------ccCcCcEEEEEeCCCCC------EEEE-eeeecCcccchhCCCEEECC---
Confidence 2210 0 00110 01111000111121111 1111 26777876654332 12221
Q ss_pred ccCCcccccccccCCcccC-ccc--eehhhHHHHHHHHHHHHhh-----hhcccc--chhhhhhhhcCC-CccchHHHHH
Q 003041 713 AAGGRYDNLIGMFGTKQVP-AVG--VSLGIERVFTIMEQIQKER-----NQIIRA--TETQVLVGLLGD-KLPLAAELVS 781 (854)
Q Consensus 713 a~GGRYD~Li~~fg~~~~p-AvG--fsigieRL~~~L~~~~~~~-----~~~~~~--~~~dVlV~~~~~-~~~~a~~la~ 781 (854)
-|....| .+| ...++||++.++.++..+. .+.||+ +|.||+|++.++ ....+.++++
T Consensus 453 ------------~g~~~~Pviih~~~~GsieR~i~aliE~~~~~~~~g~gl~~P~~lAP~qV~IIpi~e~~~~~A~eIa~ 520 (613)
T PRK03991 453 ------------NGEEKYPIILHCSPTGSIERVIYALLEKAAKEEEEGKVPMLPTWLSPTQVRVIPVSERHLDYAEEVAD 520 (613)
T ss_pred ------------CCCEeeCEEEEECCEeHHHHHHHHHHHHhCCccccCceeEcCccccCceEEEEEeCHHHHHHHHHHHH
Confidence 1222234 223 3346999999999876543 122433 589999999987 6678999999
Q ss_pred HHhhhccceeeee-hhhHHHHHhhhhcCCCceEEEeecccccccceeeeccccchhhhcchhhhHHHHHHhhc
Q 003041 782 ELWNAKVKAEYMV-HKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 853 (854)
Q Consensus 782 ~Lr~~GI~ael~~-~~~l~k~l~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~ 853 (854)
.||++||+|+++. +.++++++++|++.|+||+|+||++|+++|+|+||++.++++..++++++++.|+++++
T Consensus 521 ~Lr~~GirV~lDdr~~slgkKir~A~~~GiP~iIVIG~kEle~g~VtVr~R~t~eq~~v~l~eli~~l~~~~~ 593 (613)
T PRK03991 521 KLEAAGIRVDVDDRDESLGKKIRDAGKEWIPYVVVIGDKEMESGKLTVTIREESEKVEMTLEELIERIKEETK 593 (613)
T ss_pred HHHhCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEECcchhhCCeEEEEECCCCceEEeeHHHHHHHHHHHHh
Confidence 9999999999987 46899999999999999999999999999999999999999999999999999987763
No 43
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=99.88 E-value=4.6e-23 Score=225.26 Aligned_cols=155 Identities=15% Similarity=0.223 Sum_probs=136.7
Q ss_pred CCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC---chhhhhhhhccCCceeeeccccc
Q 003041 432 KLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDLTV 508 (854)
Q Consensus 432 ~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~~G~~l~LRpDlT~ 508 (854)
..++|++||+|.++.+++.|++.++++|+++||++|.||+|++.++|.. +|+. .++||++ +.+|+.++|||+.|+
T Consensus 17 ~~~~G~~~~~p~g~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~-sg~~~~~~~~my~~-~~~~~~l~LRP~~~~ 94 (298)
T cd00771 17 EAGPGLPFWLPKGAIIRNELEDFLRELQRKRGYQEVETPIIYNKELWET-SGHWDHYRENMFPF-EEEDEEYGLKPMNCP 94 (298)
T ss_pred CCCCcceEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhh-CCCccccccCceEe-ccCCceEEEcccCCH
Confidence 4789999999999999999999999999999999999999999999976 5764 4789999 567789999999999
Q ss_pred chhhhhhhc----cccchhhhhhhhhhcccCCC----CccccccccccccccccccccCCCh-hhHHHHHHHhhhcCCCc
Q 003041 509 PFARYVAMN----GLTSFKRHQIAKVYRRDNPS----KGRYREFYQCDFDIAGQYERMGPDF-EVVKILTELLNELDIGD 579 (854)
Q Consensus 509 ~~aR~~a~~----~~~p~K~y~ig~VfR~e~p~----~Gr~REf~Q~d~eiig~~~~~~aDa-EvI~l~~eil~~Lgl~~ 579 (854)
+++|+++.. ..+|+|+||+|+|||+|.++ .+|.|||+|.|+|+||.++...+|. |++.++.++++.||+..
T Consensus 95 ~~~~~~~~~~~s~~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~~~~e~~~~e~~e~l~~~~~~l~~lgl~~ 174 (298)
T cd00771 95 GHCLIFKSKPRSYRDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIFCTPDQIKEEIKGVLDLIKEVYSDFGFFD 174 (298)
T ss_pred HHHHHHHhhccchhhCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEEeCCcchHHHHHHHHHHHHHHHHHcCCCc
Confidence 999998853 46799999999999999774 2699999999999998765433343 68999999999999989
Q ss_pred ceeeechhh
Q 003041 580 YEIKLNHRL 588 (854)
Q Consensus 580 ~~i~Lnh~~ 588 (854)
+.+.+++++
T Consensus 175 ~~i~l~~~~ 183 (298)
T cd00771 175 YKVELSTRP 183 (298)
T ss_pred EEEEEEcCh
Confidence 999999986
No 44
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=99.88 E-value=2.3e-23 Score=222.66 Aligned_cols=163 Identities=18% Similarity=0.183 Sum_probs=141.6
Q ss_pred cCCCCCCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC---chhhhhhhhccCCceeee
Q 003041 427 SRRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLR 503 (854)
Q Consensus 427 ~~~~~~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~~G~~l~LR 503 (854)
+++..+.++|++||+|.++.+++.|++.++++|+++||++|.||+|++.++|.. +|+. .++||++.|.+|+.++||
T Consensus 13 ag~~~~~~~G~~~~lP~g~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~~-sg~~~~~~~emy~~~d~~~~~l~Lr 91 (255)
T cd00779 13 AGFIRQTSSGLYSWLPLGLRVLKKIENIIREEMNKIGAQEILMPILQPAELWKE-SGRWDAYGPELLRLKDRHGKEFLLG 91 (255)
T ss_pred cCCcccCCCceEEECchHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHh-cCCccccCcccEEEecCCCCeEEEe
Confidence 456678899999999999999999999999999999999999999999999965 4764 478999999999999999
Q ss_pred cc----cccchhhhhhhccccchhhhhhhhhhccc-CCCCc--cccccccccccccccccccCCCh---hhHHHHHHHhh
Q 003041 504 YD----LTVPFARYVAMNGLTSFKRHQIAKVYRRD-NPSKG--RYREFYQCDFDIAGQYERMGPDF---EVVKILTELLN 573 (854)
Q Consensus 504 pD----lT~~~aR~~a~~~~~p~K~y~ig~VfR~e-~p~~G--r~REf~Q~d~eiig~~~~~~aDa---EvI~l~~eil~ 573 (854)
|+ +|..++|++.+++.+|+|+||+|+|||+| +|+.| |.|||+|+|+++|+.++. .+|+ |++.++.++++
T Consensus 92 Pt~e~~~t~~~~~~i~s~~~LPlr~~~~~~~FR~E~~~~~Gl~R~reF~q~e~~~~~~~~~-~a~~~~~~i~~~~~~il~ 170 (255)
T cd00779 92 PTHEEVITDLVANEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDIDEE-SLEETYEKMYQAYSRIFK 170 (255)
T ss_pred cCCcHHHHHHHHhccccHhhCCHHHHhCcceecCCCCCCCceeeeeeEeHhhheeccCCHH-HHHHHHHHHHHHHHHHHH
Confidence 99 55555666666678899999999999999 89989 999999999999998532 4566 67788999999
Q ss_pred hcCCCcceeeechhhhhhh
Q 003041 574 ELDIGDYEIKLNHRLLLDG 592 (854)
Q Consensus 574 ~Lgl~~~~i~Lnh~~ll~~ 592 (854)
.||+ ++.+..++++.+.+
T Consensus 171 ~Lgl-~~~~~~~~~~~~gg 188 (255)
T cd00779 171 RLGL-PFVKVEADSGAIGG 188 (255)
T ss_pred HcCC-cEEEEEecCCCCCC
Confidence 9999 68888888876554
No 45
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.9e-22 Score=218.77 Aligned_cols=353 Identities=17% Similarity=0.244 Sum_probs=255.6
Q ss_pred CCCCCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC---chhhhhhhhccCCceeeecc
Q 003041 429 RLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYD 505 (854)
Q Consensus 429 ~~~~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~~G~~l~LRpD 505 (854)
+..++.+|...|+|.+..+++.+.+.|+..++++||+||.||.+....+|+. +|+| .++||+|.- ..+.++|.|+
T Consensus 176 ff~~lSPGS~FflP~G~~iyN~Lv~fir~ey~~rGf~EVitPniy~~~LWe~-SGHwqnY~enmF~~e~-eke~~~LKPM 253 (560)
T KOG1637|consen 176 FFHELSPGSCFFLPHGTRIYNTLVDFIRAEYRKRGFTEVITPNIYNKKLWET-SGHWQNYSENMFKFEV-EKEEFALKPM 253 (560)
T ss_pred eeccCCCcceeeccCcchHHHHHHHHHHHHHHhcCCceecCcchhhhhhhhh-ccchhhhhhhceeeee-chhhhccCcc
Confidence 4568889999999999999999999999999999999999999999999865 8987 488999953 5567999999
Q ss_pred cccchhhhhhhc----cccchhhhhhhhhhcccCCC----CccccccccccccccccccccCCCh-hhHHHHHHHhhhcC
Q 003041 506 LTVPFARYVAMN----GLTSFKRHQIAKVYRRDNPS----KGRYREFYQCDFDIAGQYERMGPDF-EVVKILTELLNELD 576 (854)
Q Consensus 506 lT~~~aR~~a~~----~~~p~K~y~ig~VfR~e~p~----~Gr~REf~Q~d~eiig~~~~~~aDa-EvI~l~~eil~~Lg 576 (854)
.|+++.-..+.. +.+|+|.--+|.+.|+|-++ ..|.|.|+|-|.+||++++++..|. -+++.+..++.-+|
T Consensus 254 NCPgHcLmf~~r~rS~reLPlR~aDFg~LHRnE~SGaLsGLTRvRrFqQDDaHIFCt~~Qi~~Eik~~l~fl~~vY~~fg 333 (560)
T KOG1637|consen 254 NCPGHCLMFAHRDRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCTPDQVKEEIKGCLDFLDYVYGVFG 333 (560)
T ss_pred CCCccccccccCCccHhhCCccccCcceeeeccccccccccceeeeecccCceEEecCccHHHHHHHHHHHHHHHHHhcc
Confidence 999998777653 46899999999999999654 3499999999999999987754443 35777777777777
Q ss_pred CCcceeeechhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHHHHH---HHhcCcceeecccccccccccCChHHH
Q 003041 577 IGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEM---VEEKGLSVETADRIGTFVKERGSPLVL 653 (854)
Q Consensus 577 l~~~~i~Lnh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L---~~~~gl~~~~~~~L~~l~~~~g~~~~v 653 (854)
. .|.+.++.+.- .++| .+ ..|++....| ++..| .|..
T Consensus 334 f-~f~l~lSTRPe-----~~lG-----------~l-----~~Wd~AE~~L~~al~e~g-----------------~pw~- 373 (560)
T KOG1637|consen 334 F-TFKLNLSTRPE-----KFLG-----------DL-----ETWDEAEFKLEEALNESG-----------------EPWV- 373 (560)
T ss_pred c-cceeEeccChH-----Hhcc-----------CH-----HHHHHHHHHHHHHHHHhC-----------------CCce-
Confidence 5 47777776631 2222 11 2344432222 22222 2210
Q ss_pred HHHHhhhcchhhcccccccccchHHHHHHHhhhccccceeeeeccccc--cCcccccccccccCCcccccccccCCcccC
Q 003041 654 LSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLAR--GLDYYTGVGSIAAGGRYDNLIGMFGTKQVP 731 (854)
Q Consensus 654 l~~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~gv~~~I~~D~sl~r--gl~YYtG~~~Ia~GGRYD~Li~~fg~~~~p 731 (854)
++.....|++...... +.+.+....-..+|++|+-+.- .+.|-+- .|-| ..|
T Consensus 374 ---lN~GDGAFYGPKIDi~-------l~Dal~r~hQcaTIQLDFqLP~rFdL~y~~~------~g~~----------erP 427 (560)
T KOG1637|consen 374 ---LNPGDGAFYGPKIDIT-------LDDALGRKHQCATIQLDFQLPIRFDLEYETE------DGDL----------ERP 427 (560)
T ss_pred ---ecCCCcccccceeeeE-------hhhhcCcccceeeeeecccChhhcCceeecc------cccc----------cch
Confidence 1111112333221111 1112222211247888887754 4445442 1112 223
Q ss_pred cc---ceehhhHHHHHHHHHHHHhhhhccccchhhhhhhhcCC-CccchHHHHHHHhhhccceeeeeh-hhHHHHHhhhh
Q 003041 732 AV---GVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVH-KKVMKLIDRAR 806 (854)
Q Consensus 732 Av---GfsigieRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~~-~~l~k~l~~A~ 806 (854)
+. -.=.++||++++|.++..+.-+.|. .|-++.||++++ ...++.++..+|...|+-++++.+ .++.++++.|+
T Consensus 428 VmIHRAIlGSvERmiaiL~E~~~gkwPFWl-SPRq~~vIpVse~~~~ya~~V~~ql~~a~f~~Dld~t~~tl~kkir~Aq 506 (560)
T KOG1637|consen 428 VMIHRAILGSVERMIAILLESYGGKWPFWL-SPRQAVVIPVSEGPLDYATSVQKQLEEAGFYVDLDPTDSTLRKKIRNAQ 506 (560)
T ss_pred hhHHHHHhhhHHHHHHHHHHHhCCCCCeee-ccceEEEEECCCcchhHHHHHHHHHHhhhceeecCCccchHHHHHhhhh
Confidence 11 1223799999999998776667787 477999999997 678999999999999999998874 56999999999
Q ss_pred cCCCceEEEeecccccccceeeeccc---cchhhhcchhhhHHHHHH
Q 003041 807 ESKIPWMVIVGERELNEGIVKLKNID---TTQEEVISRSNFVEEIQR 850 (854)
Q Consensus 807 ~~gi~~iviIg~~e~~~g~V~Vk~l~---~~~e~~v~~~elv~~L~~ 850 (854)
..+++|+++||++|++.++|.|++++ ++.+-+++.+++++.+++
T Consensus 507 la~yn~i~VVGdkE~~~~~vnVr~Rd~~~~~~~~~~tie~~~~~~~~ 553 (560)
T KOG1637|consen 507 LAHYNFIFVVGDKEVETGRVNVRTRDNRDNKTESEMTIEELSDEFKE 553 (560)
T ss_pred hcceeEEEEEchhhhhcCceeeeccccccccccceeeHHHHHHHHHH
Confidence 99999999999999999999999984 334558888888887764
No 46
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=2.1e-21 Score=204.77 Aligned_cols=359 Identities=18% Similarity=0.254 Sum_probs=230.1
Q ss_pred cCCCCCCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC---chhhhhhhhccCCceeee
Q 003041 427 SRRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLR 503 (854)
Q Consensus 427 ~~~~~~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~~G~~l~LR 503 (854)
.+++....+|++-|+|.+.++.+++.+.+...|+.-|+++|..|.+.+.++|+ ++|.| .+++|+|.|++|+.++|-
T Consensus 34 ~GfI~ps~~G~yq~LPlg~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LWe-kTgRw~~~gsEl~rl~Dr~gkq~cL~ 112 (457)
T KOG2324|consen 34 VGFIRPSSPGLYQLLPLGLRVLNKLCRLLDNEMQSGGAQKISLPILSSKELWE-KTGRWDAMGSELFRLHDRKGKQMCLT 112 (457)
T ss_pred hCccccCCCCceeeccchHHHHHHHHHHHHHHHHhccCeeEeecccChHHHHH-hcCcccccchhheEeeccCCCEeccC
Confidence 47888889999999999999999999999999999999999999999999996 48887 488999999999999999
Q ss_pred cccccchhhhhhh-----ccccchhhhhhhhhhccc-CCCCc--cccccccccccccccccc--cCCChhhHHHHHHHhh
Q 003041 504 YDLTVPFARYVAM-----NGLTSFKRHQIAKVYRRD-NPSKG--RYREFYQCDFDIAGQYER--MGPDFEVVKILTELLN 573 (854)
Q Consensus 504 pDlT~~~aR~~a~-----~~~~p~K~y~ig~VfR~e-~p~~G--r~REf~Q~d~eiig~~~~--~~aDaEvI~l~~eil~ 573 (854)
|..-..+.+.+++ ++++|+++|+||+.||+| +|++| |-|||++.|.+.|..+.. +....-|...++.+|+
T Consensus 113 pThEE~iT~lmat~~~lsykqlPi~vYQigrKfRDElrpRfGLlRgREFlMKDmYsFd~~~etA~qTy~~v~~aY~~iFk 192 (457)
T KOG2324|consen 113 PTHEEDITALMATYIPLSYKQLPIRVYQIGRKFRDELRPRFGLLRGREFLMKDMYSFDSDEETAQQTYQLVDQAYDRIFK 192 (457)
T ss_pred CchHHHHHHHHHhcCccccccCcEEeeeechhhhhccCccccchhhHHHHHhhhhcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 9665555555554 567899999999999999 78777 899999999999987421 1112345677888888
Q ss_pred hcCCCcceeeechhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHHHHHHHhcCcceeecccccccccccCChHHH
Q 003041 574 ELDIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVL 653 (854)
Q Consensus 574 ~Lgl~~~~i~Lnh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~gl~~~~~~~L~~l~~~~g~~~~v 653 (854)
.|++. |.-.=.+++.+.+-+ +.+ + +.+.... ++ .+ -.++.+ .+.+|. +.
T Consensus 193 qL~~p-fVkv~AdsG~iGG~v-----ShE-f----hl~~~vg----ED---~l----~~C~~C--------~~s~n~-e~ 241 (457)
T KOG2324|consen 193 QLGLP-FVKVWADSGDIGGEV-----SHE-F----HLIHPVG----ED---TL----MSCPSC--------GYSKNS-ED 241 (457)
T ss_pred HcCCC-eEEEeecccccCcee-----eee-E----eccCccC----cc---ce----eecCcC--------CccCch-hh
Confidence 88873 433333344333311 111 0 0000000 00 00 000000 011221 11
Q ss_pred HHHHhhhcchhhcccccccccc-hHHHHHHHhhhccccceeeeeccccccCcccccccccccCCccccccc-cc----CC
Q 003041 654 LSKLRQEGSLFLENSSAKLALD-DLEILFQALEKSKCIDKVVFDLSLARGLDYYTGVGSIAAGGRYDNLIG-MF----GT 727 (854)
Q Consensus 654 l~~l~~~~~~~~~~~~~~~al~-~L~~l~~~l~~~gv~~~I~~D~sl~rgl~YYtG~~~Ia~GGRYD~Li~-~f----g~ 727 (854)
++- .+...+.++-+ .|+.+ ..|.+ |..|| -|-.|.+-+. .| |+
T Consensus 242 ~~~--------sk~~~Cp~C~~~~L~~~----------~~IEV------gHtF~-------LG~kYS~~lna~f~~~~gK 290 (457)
T KOG2324|consen 242 LDL--------SKIASCPKCNEGRLTKT----------KSIEV------GHTFL-------LGTKYSKPLNAKFVNVEGK 290 (457)
T ss_pred hcC--------CccccCCcccCCCcccc----------cceEE------EEEEE-------eccccccccCceeeeecCC
Confidence 110 00000111111 11110 01222 22333 4566766543 22 33
Q ss_pred cccCccc-eehhhHHHHHHHHHHHHhh-hhcccc--chhhh-hhhhcCC-CccchHHHHHHHhhhcc----ceeeeehh-
Q 003041 728 KQVPAVG-VSLGIERVFTIMEQIQKER-NQIIRA--TETQV-LVGLLGD-KLPLAAELVSELWNAKV----KAEYMVHK- 796 (854)
Q Consensus 728 ~~~pAvG-fsigieRL~~~L~~~~~~~-~~~~~~--~~~dV-lV~~~~~-~~~~a~~la~~Lr~~GI----~ael~~~~- 796 (854)
++.-..| |+||+.||+++..+--.+. .-.||. +|.+| +|.+..+ ..+.+.++..+|-...+ .-++..+.
T Consensus 291 pe~l~MgCyGIGVtRllaAa~evls~~~~lrwP~~iAPy~vcli~pk~~~~~q~~~ev~~el~~~~~~~~l~~~iLlddr 370 (457)
T KOG2324|consen 291 PEFLHMGCYGIGVTRLLAAAAEVLSDDKGLRWPSLIAPYKVCLIGPKKGSKSQRAQEVISELLNDEAVGNLHGEILLDDR 370 (457)
T ss_pred cceEEecceeccHHHHHHHHHHHhccccccccccccCcceeEEeccCCcchhhhHHHHHHHhhcchhhhhhccceeccch
Confidence 3222445 8999999999987754332 244765 68888 5555544 44556677777765322 12333322
Q ss_pred ---hHHHHHhhhhcCCCceEEEeec-ccccccceeeeccccchhhhcchhhhHHHH
Q 003041 797 ---KVMKLIDRARESKIPWMVIVGE-RELNEGIVKLKNIDTTQEEVISRSNFVEEI 848 (854)
Q Consensus 797 ---~l~k~l~~A~~~gi~~iviIg~-~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L 848 (854)
++++.++.|++.||||+||||. ....+..++|+....|+..+...+++.+.+
T Consensus 371 ~~ltiG~Ri~dA~~lG~PfviVvg~s~~~~~~~~EV~~~~~ge~~~l~~~~~~~l~ 426 (457)
T KOG2324|consen 371 EELTIGKRIKDANRLGIPFVIVVGNSASWDNPEIEVRTIRWGESAELDKDGFMKLL 426 (457)
T ss_pred hhhhhHHhhhhHHhcCCCEEEEEcccccCCCceEEEEEeecCceeccchhhHHHHh
Confidence 4899999999999999999994 445578899999888887777777665544
No 47
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=5e-21 Score=217.84 Aligned_cols=409 Identities=20% Similarity=0.207 Sum_probs=259.7
Q ss_pred cCCCCCCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC---chhhhhhhhccCCceeee
Q 003041 427 SRRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLR 503 (854)
Q Consensus 427 ~~~~~~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~~G~~l~LR 503 (854)
++++.++.+|++-|+|.+.+++++|++++++.+++.|++|+..|+|.|.++|. .+|++ .+++|++.|++++.++||
T Consensus 29 Ag~i~~~~~G~y~~lP~g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLwk-Es~r~~~f~~El~~v~drg~~~l~L~ 107 (500)
T COG0442 29 AGMIRKPVKGLYVWLPLGLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWK-ESGRWEGFGPELFRVKDRGDRPLALR 107 (500)
T ss_pred cCceecccCceEEECccHHHHHHHHHHHHHHHHHhcCceEEechhcCHHHHHH-HhChhhhcchhhEEEEccCCceeeeC
Confidence 57888899999999999999999999999999999999999999999977764 57876 489999999999999999
Q ss_pred ccc----ccchhhhhhhccccchhhhhhhhhhccc-CCCCc--cccccccccccccccccccCCCh---hhHHHHHHHhh
Q 003041 504 YDL----TVPFARYVAMNGLTSFKRHQIAKVYRRD-NPSKG--RYREFYQCDFDIAGQYERMGPDF---EVVKILTELLN 573 (854)
Q Consensus 504 pDl----T~~~aR~~a~~~~~p~K~y~ig~VfR~e-~p~~G--r~REf~Q~d~eiig~~~~~~aDa---EvI~l~~eil~ 573 (854)
|.. |.-+..++.+++.+|+++|+++++||+| +|..| |.|||++.|.+.|..+.. .++. +.+..+.+++.
T Consensus 108 PTsEe~it~~~~~~i~SYkdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~~~e-~a~~~y~~~~~~Y~~if~ 186 (500)
T COG0442 108 PTSEEVITDMFRKWIRSYKDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHADEE-DAEETYEKMLDAYSRIFL 186 (500)
T ss_pred CCcHHHHHHHHHHHhhhhhhCCcceeeeeeEEeccccCCCCccchheeeecccccccCCHH-HHHHHHHHHHHHHHHHHH
Confidence 964 5555667778999999999999999999 56665 999999999999987421 1232 35678889998
Q ss_pred hcCCCcceeeechhhhhhhhhhh--cCCCcc-chhhh--ccchhhhhhhhHHHHH----------HH--HH--HhcCcce
Q 003041 574 ELDIGDYEIKLNHRLLLDGMLEI--CGVPSE-KFRTI--CSSIDKLDKQSFEQIK----------KE--MV--EEKGLSV 634 (854)
Q Consensus 574 ~Lgl~~~~i~Lnh~~ll~~il~~--~gi~~~-~~~~v--~~~l~kl~k~~~~~i~----------~~--L~--~~~gl~~ 634 (854)
++|+ .+..+.-+.++..+-..+ -.+.++ .-..+ ++.+ ..++++.. .+ .. ..++++.
T Consensus 187 ~i~l-~~~~~~ad~g~~Gg~~S~eF~~l~pd~ge~qi~ts~~y----~aN~e~a~~~~~~~~~~~~~~~~v~t~s~~~s~ 261 (500)
T COG0442 187 RLPL-IFGPVPADEGFIGGSYSHEFEALMPDGGEDQIATSHHY----GANFEKAFIDIKFEDEEEGELEYVHTTSYGIST 261 (500)
T ss_pred hCCc-eEEeecccCCCCCCccceEEEEEccCCCccEEEEecch----HHhHHHhccCCCccccccccceEecccceEEEe
Confidence 8887 355555555444322111 000000 00000 0000 01111110 00 00 0122222
Q ss_pred eecccccccccccCC------hHHHHHHHhhhcchhhccccc-ccccchHHHHHHHhhhccccceeeee-cc-ccccCcc
Q 003041 635 ETADRIGTFVKERGS------PLVLLSKLRQEGSLFLENSSA-KLALDDLEILFQALEKSKCIDKVVFD-LS-LARGLDY 705 (854)
Q Consensus 635 ~~~~~L~~l~~~~g~------~~~vl~~l~~~~~~~~~~~~~-~~al~~L~~l~~~l~~~gv~~~I~~D-~s-l~rgl~Y 705 (854)
.. +..++.++|+ |..+.+.--..-..+..+... ...++.-+.+..-++..+ ..+..| .+ ...|..|
T Consensus 262 r~---~~~~i~i~GDn~G~v~Pp~vA~~qV~~~~~~~~ga~~h~~~~~~~rd~~~~l~~~~--~~~~~D~~~~~~~G~kl 336 (500)
T COG0442 262 RI---IGAAILIHGDNEGLVLPPIVADIQVVIVPIFIKGANEHYKVVNYGRDVAEPLEKLG--IRVEGDDRSPDGPGFKL 336 (500)
T ss_pred ee---eeEEEEEecCCCCccCCchhccceEEEEeccccCcchhhhhhhhhhhhhhhhhhcc--eEEeccccCCCCCCcee
Confidence 11 2222334554 101111000000001100000 001111222222223322 367778 53 3334444
Q ss_pred cc--c--cc-ccccCCcccccccc-c---CCcc--cCccceehhhHHHHHHHHHHHHh-hhhccc-c-chhhhhhhhcCC
Q 003041 706 YT--G--VG-SIAAGGRYDNLIGM-F---GTKQ--VPAVGVSLGIERVFTIMEQIQKE-RNQIIR-A-TETQVLVGLLGD 771 (854)
Q Consensus 706 Yt--G--~~-~Ia~GGRYD~Li~~-f---g~~~--~pAvGfsigieRL~~~L~~~~~~-~~~~~~-~-~~~dVlV~~~~~ 771 (854)
|. | .+ .|--|-||..-... + .++. ...+-++++++|++..+.++.++ .+..|+ . +|+++.|+..+.
T Consensus 337 ~~~e~ieVghif~lG~kyse~~~a~v~~r~g~~~~~~mg~ygigvsr~v~a~ieq~~d~~gi~w~~a~apf~~~iv~~n~ 416 (500)
T COG0442 337 NIWEGIEVGHIFELGTKYSEAMNATVLDRDGKEQPKTMGCYGIGVSRLVAALLEQIHDENGIIWPKAIAPFDVHIVPVNT 416 (500)
T ss_pred eeeeccccCEEEEECchhhhhCeeEEEecCCCccceEEEehhhhhhhHHHHHHHHhcccccCccccccCcceeEEEEcCc
Confidence 43 3 33 46688999775322 1 2233 23445889999977666665543 446677 3 588999988875
Q ss_pred -C---ccchHHHHHHHhhhc-cceeeee-hhhHHHHHhhhhcCCCceEEEeecccccccceeeeccccchhhhcchhhhH
Q 003041 772 -K---LPLAAELVSELWNAK-VKAEYMV-HKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFV 845 (854)
Q Consensus 772 -~---~~~a~~la~~Lr~~G-I~ael~~-~~~l~k~l~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv 845 (854)
. ...+.++..+|...| +.|+++. +++++-.+..|+..|+||-+++|++ .+.|.|.+|++.+++...++..+++
T Consensus 417 ~~~~~~~~~~~~~~~l~~~G~~e~~~ddr~er~g~k~~~a~liGiP~~~~~g~~-~~~g~~e~k~r~~ge~~~~~~~~l~ 495 (500)
T COG0442 417 KDFKQAEAAEKLYVELPWCGTVEVLLDDRDERPGVKFADADLIGIPLRIVVGKR-LAEGEVEVKCRKCGEKEAVTIEALF 495 (500)
T ss_pred hhHHHHHHhhhHHHHHHhCCchhhhhhhhccccCccccCCeEecccceeeeccc-ccCCceeEEecCCCchhhccHHHHH
Confidence 2 223445677777888 8888776 5789999999999999999999987 6678999999999998888888887
Q ss_pred HHH
Q 003041 846 EEI 848 (854)
Q Consensus 846 ~~L 848 (854)
+++
T Consensus 496 ~~~ 498 (500)
T COG0442 496 ARL 498 (500)
T ss_pred HHh
Confidence 765
No 48
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=99.82 E-value=8.5e-20 Score=210.34 Aligned_cols=122 Identities=18% Similarity=0.256 Sum_probs=102.1
Q ss_pred cC-ccceehhhHHHHHHHHHHHHhh---------hhcccc--chhhhhhhhcCC---CccchHHHHHHHhhhccceeeee
Q 003041 730 VP-AVGVSLGIERVFTIMEQIQKER---------NQIIRA--TETQVLVGLLGD---KLPLAAELVSELWNAKVKAEYMV 794 (854)
Q Consensus 730 ~p-AvGfsigieRL~~~L~~~~~~~---------~~~~~~--~~~dVlV~~~~~---~~~~a~~la~~Lr~~GI~ael~~ 794 (854)
+| .+=-|+|+||++.++.++.... ...|++ +|.+|+|++.++ ....+.++++.||+.||+|+++.
T Consensus 414 ~P~VIepS~GIdRIi~ALle~~~~e~~~~~~~r~vL~lp~~lAP~kV~VIpl~~~~el~~~A~eIa~~LR~~GI~VeiD~ 493 (551)
T TIGR00389 414 IPHVIEPSFGIDRIIYALLEHSYQEEVLDGEEREVLRLPPHLAPIKVAVLPLVNKEELKEIAKEIFQALRKTGIRIKYDD 493 (551)
T ss_pred cceEEEcccCHHHHHHHHHHhhCccccccccccceeccCCccCCceEEEEEecCcHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 44 3346678999998887654321 013455 689999999874 45679999999999999999988
Q ss_pred hhhHHHHHhhhhcCCCceEEEeecccccccceeeeccccchhhhcchhhhHHHHHHh
Q 003041 795 HKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRR 851 (854)
Q Consensus 795 ~~~l~k~l~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~ 851 (854)
..++++++++|++.|+||+|+||++++++++|+||++.++++..+++++++++|++.
T Consensus 494 s~sIGKq~rrADeiGiPf~IIIG~~EledgtVTIRdRdT~eQ~~I~ldeL~~~L~e~ 550 (551)
T TIGR00389 494 SGTIGKRYRRADEIGTPFCVTIDFETLEDETVTIRERDSMKQVRVKIKELPSYIKKL 550 (551)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCchhhCCEEEEEECCCCceEEeeHHHHHHHHHhh
Confidence 656999999999999999999999999999999999999999999999999998764
No 49
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=99.78 E-value=1.1e-19 Score=191.82 Aligned_cols=143 Identities=17% Similarity=0.235 Sum_probs=125.9
Q ss_pred HHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCC--C-chhhhhhhhcc----CCceeeecccccchhhhhhhc
Q 003041 445 MAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGE--D-SKLIYDLADQG----GELCSLRYDLTVPFARYVAMN 517 (854)
Q Consensus 445 ~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~--~-~k~~y~~~D~~----G~~l~LRpDlT~~~aR~~a~~ 517 (854)
+.++++|++.+++.|.++||++|.||+|++.++|.. .|+ . .++||++.|.+ |+.++||||.|+|++|+++.+
T Consensus 2 ~~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~ 80 (235)
T cd00670 2 TALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFK-GGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGE 80 (235)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCeEcCHHHHhh-cCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhcc
Confidence 578899999999999999999999999999999965 442 2 47899999988 899999999999999999864
Q ss_pred ----cccchhhhhhhhhhcccCCC---Ccccccccccccccccccc-ccCCChhhHHHHHHHhhhcCCCcceeeechhhh
Q 003041 518 ----GLTSFKRHQIAKVYRRDNPS---KGRYREFYQCDFDIAGQYE-RMGPDFEVVKILTELLNELDIGDYEIKLNHRLL 589 (854)
Q Consensus 518 ----~~~p~K~y~ig~VfR~e~p~---~Gr~REf~Q~d~eiig~~~-~~~aDaEvI~l~~eil~~Lgl~~~~i~Lnh~~l 589 (854)
..+|+|+||+|+|||+|.++ .+|.|||+|.|+|+||.++ ....+.|++.++.++++.||+ ++.+.+++.+.
T Consensus 81 ~~~~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~~~~~~~~~e~~~~~~~~l~~lgl-~~~i~~~~~~~ 159 (235)
T cd00670 81 ILSYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEPEEAEEERREWLELAEEIARELGL-PVRVVVADDPF 159 (235)
T ss_pred CccchhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCHHHHHHHHHHHHHHHHHHHHHcCC-cEEEEEccChh
Confidence 35799999999999999876 6799999999999999863 334678999999999999998 69999998864
No 50
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=99.76 E-value=2.7e-19 Score=192.09 Aligned_cols=158 Identities=24% Similarity=0.226 Sum_probs=131.3
Q ss_pred CCCCCC-CccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC---c-hhhhhhhhccC----C
Q 003041 428 RRLPKL-PKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---S-KLIYDLADQGG----E 498 (854)
Q Consensus 428 ~~~~~~-p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~---~-k~~y~~~D~~G----~ 498 (854)
+++.+. ++|++||+|.+..++++|++.+++.++++||++|.||.|++.++|. ++|+. . +++|.+.|.+| +
T Consensus 14 g~~~~~~~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~-~~g~~~~~~~~e~~~~~~~~~~~~~~ 92 (264)
T cd00772 14 ELADQGPGRGIINFLPLAKAILDKIENVLDKMFKEHGAQNALFPFFILASFLE-KEAEHDEGFSKELAVFKDAGDEELEE 92 (264)
T ss_pred CCccccCCCCEEEECCcHHHHHHHHHHHHHHHHHHcCCeEEECCeeccHHHHh-hcCCcccccCccceEEEeCCCCccCc
Confidence 444444 8999999999999999999999999999999999999999999985 57765 2 67999998887 8
Q ss_pred ceeeecccccchhhhhhhc----cccchhhhhhhhhhccc-CCCCc--cccccccccccccccccccCCChhh---HHHH
Q 003041 499 LCSLRYDLTVPFARYVAMN----GLTSFKRHQIAKVYRRD-NPSKG--RYREFYQCDFDIAGQYERMGPDFEV---VKIL 568 (854)
Q Consensus 499 ~l~LRpDlT~~~aR~~a~~----~~~p~K~y~ig~VfR~e-~p~~G--r~REf~Q~d~eiig~~~~~~aDaEv---I~l~ 568 (854)
.++|||+.|++++++++.. +.+|+|+|++++|||+| +|..| |.|||+|+|.++|+... ..++.|+ +..+
T Consensus 93 ~l~LrPt~e~~~~~~~~~~i~s~~~LPlrl~~~~~~fR~E~r~~~Gl~R~reF~~~e~~~~~~~~-e~a~~e~~~~~~~~ 171 (264)
T cd00772 93 DFALRPTLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEIRPRFGFLRAREFIMKDGHSAHADA-EEADEEFLNMLSAY 171 (264)
T ss_pred eEEECCCCCHHHHHHHHhhhhhhhccCeeEEEEeCeEeCcCCCCCCcceeeEEEEeeeEEecCCH-HHHHHHHHHHHHHH
Confidence 9999999999999988753 56899999999999999 78788 99999999999996422 2345555 4556
Q ss_pred HHHhhhcCCCcceeeechh
Q 003041 569 TELLNELDIGDYEIKLNHR 587 (854)
Q Consensus 569 ~eil~~Lgl~~~~i~Lnh~ 587 (854)
.++++.||.-++.+....+
T Consensus 172 ~~i~~~l~~lp~~~~~~~~ 190 (264)
T cd00772 172 AEIARDLAAIDFIEGEADE 190 (264)
T ss_pred HHHHHhcCCccEEEEEcCC
Confidence 9999999932566655444
No 51
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=99.75 E-value=7.8e-19 Score=187.75 Aligned_cols=140 Identities=20% Similarity=0.239 Sum_probs=117.3
Q ss_pred CCCccchhhHHhHHHHHHHhHHHHHHHHHhcC--ccccCcchhHhHHhhhhccCCCchhhhhhhhccCCceeeecccc--
Q 003041 432 KLPKGTRDFAKEQMAVREKAFSIITEVFKRHG--AMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLT-- 507 (854)
Q Consensus 432 ~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G--~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D~~G~~l~LRpDlT-- 507 (854)
..++|++||+|.++.++++|++.+++.|.++| |++|.||++++.+.|..+.|+. |.+++.+.||||+|
T Consensus 19 ~~~~G~~d~~P~g~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~~mf~~~~g~~--------d~~~~~~~Lrp~~~~~ 90 (254)
T cd00774 19 GGVAGFYDYGPLGVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPELMFKTSIGPV--------ESGGNLGYLRPETAQG 90 (254)
T ss_pred cChhcccccCchHHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCHHHheeeeccc--------CCCCcccccCCcccch
Confidence 34899999999999999999999999999996 9999999999987665444442 45667899999999
Q ss_pred --cchhhhhhhc-cccchhhhhhhhhhcccCCCC---ccccccccccccccccccccCCC-hhhHHHHHHHhhhcCCCc
Q 003041 508 --VPFARYVAMN-GLTSFKRHQIAKVYRRDNPSK---GRYREFYQCDFDIAGQYERMGPD-FEVVKILTELLNELDIGD 579 (854)
Q Consensus 508 --~~~aR~~a~~-~~~p~K~y~ig~VfR~e~p~~---Gr~REf~Q~d~eiig~~~~~~aD-aEvI~l~~eil~~Lgl~~ 579 (854)
++++|.+..+ +.+|+|+||+|+|||+|.++. +|.|||+|+|+|+|+.++....+ ..++....+++.++|+.+
T Consensus 91 ~~~~~~~~~~~~~~~lP~~~~qig~~fR~E~~~~~gl~R~ReF~q~d~~~f~~~~~~~e~~~~v~~~~~~~l~~~G~~~ 169 (254)
T cd00774 91 IFVNFKNLLEFNRRKLPFGVAQIGKSFRNEISPRNGLFRVREFTQAEIEFFVDPEKSHPWFDYWADQRLKWLPKFAQSP 169 (254)
T ss_pred HHHHHHHHHHHhCCCCCchhhhhchhhccccCcccceeeeccchhhheeeeECCCCchHHHHHHHHHHHHHHHHcCCCc
Confidence 6888988865 489999999999999997554 79999999999999986542222 246788899999998754
No 52
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=99.73 E-value=1.1e-17 Score=187.50 Aligned_cols=94 Identities=21% Similarity=0.234 Sum_probs=86.3
Q ss_pred chhhhhhhhcCC-Cc---cchHHHHHHHhhhcc-ceeeeehhhHHHHHhhhhcCCCceEEEe-------eccccccccee
Q 003041 760 TETQVLVGLLGD-KL---PLAAELVSELWNAKV-KAEYMVHKKVMKLIDRARESKIPWMVIV-------GERELNEGIVK 827 (854)
Q Consensus 760 ~~~dVlV~~~~~-~~---~~a~~la~~Lr~~GI-~ael~~~~~l~k~l~~A~~~gi~~iviI-------g~~e~~~g~V~ 827 (854)
+|.+|.|+++.+ .. ..+.+|.+.|+++|| +++++.+++++++++.++..|+||+|+| |++|.++++|+
T Consensus 433 APvQVaVLPLs~~~~~l~eyAkeI~~~L~~~Gi~rv~~DdsesIGKKyRraDeiGiPy~ITVD~~Tl~dGdkE~e~gTVT 512 (539)
T PRK14894 433 APIKVAVFPLKRNHEGLVATAKAVRRQLQVGGRMRTVYDDTGAIGKLYRRQDEIGTPFCITVDFDTIGQGKDPALAGTVT 512 (539)
T ss_pred CCceEEEEeccccccchHHHHHHHHHHHHHCCCceEEEcCCCCHhHHHHhhhccCCCEEEEEeccccccccchhhcCeEE
Confidence 689999999885 33 779999999999998 9999987899999999999999999999 88888889999
Q ss_pred eeccccchhhhcchhhhHHHHHHhhc
Q 003041 828 LKNIDTTQEEVISRSNFVEEIQRRLN 853 (854)
Q Consensus 828 Vk~l~~~~e~~v~~~elv~~L~~~l~ 853 (854)
||++++.++..|++++++++|++.+.
T Consensus 513 VR~RDs~eQ~rV~ideli~~L~~~~~ 538 (539)
T PRK14894 513 VRDRDTMAQERVPISELEAYLRDRVS 538 (539)
T ss_pred EEEeCCCeEEEEEHHHHHHHHHHHhc
Confidence 99999999999999999999988764
No 53
>PLN02734 glycyl-tRNA synthetase
Probab=99.72 E-value=2.8e-18 Score=200.48 Aligned_cols=120 Identities=17% Similarity=0.204 Sum_probs=100.5
Q ss_pred cC-ccceehhhHHHHHHHHHHHH-----h---hhhcccc--chhhhhhhhcCC---CccchHHHHHHHhhhccceeeeeh
Q 003041 730 VP-AVGVSLGIERVFTIMEQIQK-----E---RNQIIRA--TETQVLVGLLGD---KLPLAAELVSELWNAKVKAEYMVH 795 (854)
Q Consensus 730 ~p-AvGfsigieRL~~~L~~~~~-----~---~~~~~~~--~~~dVlV~~~~~---~~~~a~~la~~Lr~~GI~ael~~~ 795 (854)
+| .|=-|+|++||+.++.++.. + ....||+ +|++|.|+++.. ....+.++++.||++||+|+++..
T Consensus 528 iP~VIEPS~GIgRIl~AilE~s~~~~~~De~R~~L~~Pp~IAP~qVaIlPL~~~ee~~~~A~eLa~~LR~~GIrVelDd~ 607 (684)
T PLN02734 528 TPSVIEPSFGIGRIIYCLFEHSFYTRPGDEQLNVFRFPPLVAPIKCTVFPLVQNQQLNAVAKVISKELTAAGISHKIDIT 607 (684)
T ss_pred cCceEecCccHHHHHHHHHHHHhccccCCCcceEEecCcccCCcEEEEEEecCChHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 45 44577889999999888654 2 1234555 688999887764 457899999999999999999874
Q ss_pred -hhHHHHHhhhhcCCCceEEEeecccccccceeeeccccchhhhcchhhhHHHHHHhhc
Q 003041 796 -KKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 853 (854)
Q Consensus 796 -~~l~k~l~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~ 853 (854)
.++++++++|++.|+||+|+||. +++|+||++.++++..|+++++++.+++.++
T Consensus 608 ~~SIGKRyrrADeiGIPf~ItIG~----dgtVTIRdRdsgeQ~rV~ldeLv~~I~~li~ 662 (684)
T PLN02734 608 GTSIGKRYARTDELGVPFAVTVDS----DGSVTIRERDSKDQVRVPVEEVASVVKDLTD 662 (684)
T ss_pred CCCHhHHHHHHHHcCCCEEEEECC----CCeEEEEECCCCceEEeeHHHHHHHHHHHHc
Confidence 58999999999999999999996 6999999999999999999999999987664
No 54
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=99.72 E-value=3.5e-18 Score=183.46 Aligned_cols=147 Identities=18% Similarity=0.188 Sum_probs=124.2
Q ss_pred CCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC---chhhhhhhhccCC----ceeeec
Q 003041 432 KLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGE----LCSLRY 504 (854)
Q Consensus 432 ~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~~G~----~l~LRp 504 (854)
++++|+++|+|.+..+++.|++.+++.++++||++|.||.+++.++|..++|++ .++||++.|.+++ .++|||
T Consensus 19 ~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~~~~~~~~~~~~~L~P 98 (261)
T cd00778 19 GPVKGCMVFRPYGYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHGGLEELEEPLALRP 98 (261)
T ss_pred CCCCCeEEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceEEEEecCCcccCCcEEEcC
Confidence 468899999999999999999999999999999999999999999986557776 5789999987754 799999
Q ss_pred c----cccchhhhhhhccccchhhhhhhhhhcccCCC---Cccccccccccccc-cccccccCCC-hhhHHHHHHHhhhc
Q 003041 505 D----LTVPFARYVAMNGLTSFKRHQIAKVYRRDNPS---KGRYREFYQCDFDI-AGQYERMGPD-FEVVKILTELLNEL 575 (854)
Q Consensus 505 D----lT~~~aR~~a~~~~~p~K~y~ig~VfR~e~p~---~Gr~REf~Q~d~ei-ig~~~~~~aD-aEvI~l~~eil~~L 575 (854)
+ +|..+++.+.+++.+|+|+|+++++||+|.++ .+|.|||+|.|.++ ++.++....+ .+++.++.++++.|
T Consensus 99 t~e~~~~~~~~~~i~s~r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~~e~~~~~~~~~~~~~~~i~~~l 178 (261)
T cd00778 99 TSETAIYPMFSKWIRSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATEEEAEEEVLQILDLYKEFYEDL 178 (261)
T ss_pred CCCHHHHHHHHhhccchhhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9 66666777777778999999999999999764 45999999999985 6665433223 35678899999998
Q ss_pred -CCC
Q 003041 576 -DIG 578 (854)
Q Consensus 576 -gl~ 578 (854)
|+.
T Consensus 179 lgl~ 182 (261)
T cd00778 179 LAIP 182 (261)
T ss_pred CCCe
Confidence 985
No 55
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=6.5e-17 Score=180.33 Aligned_cols=123 Identities=17% Similarity=0.255 Sum_probs=104.1
Q ss_pred cC-ccceehhhHHHHHHHHHHHHh--hh---------hccccchhhhhhhhcCC---CccchHHHHHHHhhhccceeeee
Q 003041 730 VP-AVGVSLGIERVFTIMEQIQKE--RN---------QIIRATETQVLVGLLGD---KLPLAAELVSELWNAKVKAEYMV 794 (854)
Q Consensus 730 ~p-AvGfsigieRL~~~L~~~~~~--~~---------~~~~~~~~dVlV~~~~~---~~~~a~~la~~Lr~~GI~ael~~ 794 (854)
+| .|=-|+|+||++.++.++.-. .. +.+ -+|++|.|.|+-. .-..+.++.+.|++.|+.++++.
T Consensus 415 iP~VIEPSfGidRi~y~~l~~ay~~ee~~e~R~vLrl~p~-lAPikvaVlPL~~k~~l~~~a~~i~~~L~~~~~~v~yDd 493 (558)
T COG0423 415 IPHVIEPSFGIDRIFYALLEHAYTEEEVEEKRIVLRLPPD-LAPIKVAVLPLVKKDELVEIAKEIFEKLRELGFNVDYDD 493 (558)
T ss_pred cCceeccCCCchHHHHHHHHHhhcccccccceeEEecCcc-cCceEEEEEeeecccchhHHHHHHHHHHHhcCceEEecC
Confidence 45 446788999999887664211 11 111 2688999998875 44678899999999999999998
Q ss_pred hhhHHHHHhhhhcCCCceEEEeecccccccceeeeccccchhhhcchhhhHHHHHHhhc
Q 003041 795 HKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 853 (854)
Q Consensus 795 ~~~l~k~l~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~ 853 (854)
..++++.++.+++.|.||.|.|.-+.+++++|+||++++-+|..|+++||+++|+..++
T Consensus 494 sGsIGrRYrR~DEIGtPfcVTvD~eTleD~tVTiReRDs~~QvRv~i~el~~~l~~~~~ 552 (558)
T COG0423 494 SGSIGRRYRRQDEIGTPFCVTVDFETLEDNTVTIRERDSMEQVRVKIEELADYLRELIK 552 (558)
T ss_pred CCcHhhhhhhccccCCceEEEecCCcccCCcEEEeecCchheeeeeHHHHHHHHHHHhc
Confidence 88999999999999999999999999999999999999999999999999999998875
No 56
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=99.66 E-value=1.1e-17 Score=168.68 Aligned_cols=147 Identities=24% Similarity=0.272 Sum_probs=122.5
Q ss_pred HHHHhHHHHHHHHH-hcCccccCcchhHhHHhhhhccCCC---chhhhhhhhccCCceeeecccccchhhhhhh-----c
Q 003041 447 VREKAFSIITEVFK-RHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDLTVPFARYVAM-----N 517 (854)
Q Consensus 447 ~~~~i~~~l~~if~-~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~~G~~l~LRpDlT~~~aR~~a~-----~ 517 (854)
++++|++.+++.+. ++||++|.||.|.+.++|.. +|+. .++||++.|.+++.++|||+.++++++++.. +
T Consensus 1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~-sg~~~~~~~~~~~~~~~~~~~~~L~pt~~~~~~~~~~~~~~~~~ 79 (173)
T PF00587_consen 1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWEK-SGHWDNFSDEMFKVKDRGDEEYCLRPTSEPGIYSLFKNEIRSSY 79 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHH-HSHHHHHGGGSEEEEETTTEEEEE-SSSHHHHHHHHHHHEEBHG
T ss_pred CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhhh-ccccccccCCeeeeeecccccEEeccccccceeeeecceeeecc
Confidence 46889999999999 99999999999999999976 7764 4779999999889999999999999998885 3
Q ss_pred cccchhhhhhhhhhccc-CCC--Ccccccccccccccccccccc-CCChhhHHHHHHHhhhcCCCcceeeechhhhhhhh
Q 003041 518 GLTSFKRHQIAKVYRRD-NPS--KGRYREFYQCDFDIAGQYERM-GPDFEVVKILTELLNELDIGDYEIKLNHRLLLDGM 593 (854)
Q Consensus 518 ~~~p~K~y~ig~VfR~e-~p~--~Gr~REf~Q~d~eiig~~~~~-~aDaEvI~l~~eil~~Lgl~~~~i~Lnh~~ll~~i 593 (854)
+.+|+|+|++|++||+| ++. ..|.|||+|.|+++||.++.. ....+++..+.++++.||++++.+..++++-+...
T Consensus 80 ~~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~~~~~~~~~~~~~~~~~i~~~lgl~~~~~~~~~~~~~~~~ 159 (173)
T PF00587_consen 80 RDLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTPEQSEEEFEELLELYKEILEKLGLEPYRIVLSSSGELGAY 159 (173)
T ss_dssp GGSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTSGCEEEEEEETCTSCTT
T ss_pred ccCCeEEeecccccccccccccccceeeEeeeeceEEEeCCcccHHHHHHHHHHHHHHHHHcCCceEEEEEcCCCccCCC
Confidence 45799999999999999 554 569999999999999986322 23468899999999999998899999998765543
Q ss_pred h
Q 003041 594 L 594 (854)
Q Consensus 594 l 594 (854)
.
T Consensus 160 ~ 160 (173)
T PF00587_consen 160 A 160 (173)
T ss_dssp S
T ss_pred H
Confidence 3
No 57
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=99.51 E-value=9.7e-15 Score=162.40 Aligned_cols=133 Identities=23% Similarity=0.284 Sum_probs=105.4
Q ss_pred HHHHHHhHHHHHHHHHhcCccccCcchhHhHHhh---hhccCCC-chhhhhhhhccCCceeeecccccchhhhhhhc---
Q 003041 445 MAVREKAFSIITEVFKRHGAMALDTPVFEMRETL---MGKYGED-SKLIYDLADQGGELCSLRYDLTVPFARYVAMN--- 517 (854)
Q Consensus 445 ~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~---~~~~g~~-~k~~y~~~D~~G~~l~LRpDlT~~~aR~~a~~--- 517 (854)
-.-++++++.++++|..+||+||.||+|+..+.+ ....+.. .+++|++. +.++||||+|++++|+++.+
T Consensus 239 ~~~~~~Led~IRevfvg~GFqEV~TPtLt~eE~~E~m~~~~g~eI~n~Iyk~e----e~lvLRPdLTPsLaR~La~N~~~ 314 (453)
T TIGR02367 239 EDYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRVD----KNFCLRPMLAPNLYNYLRKLDRA 314 (453)
T ss_pred ccHHHHHHHHHHHHHHHCCCEEEECCeecchHHHHhhcCccCCcccccceEec----CceEecccCHHHHHHHHHHhhhh
Confidence 3456888999999999999999999999644433 2211211 35687763 36899999999999999864
Q ss_pred cccchhhhhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhhhcCCCcceeeech
Q 003041 518 GLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIGDYEIKLNH 586 (854)
Q Consensus 518 ~~~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~Lgl~~~~i~Lnh 586 (854)
...|+|+||+|+|||+|.++.+|.|||+|++++++|.... ..|+..++.++|+.||+ +|.+. +|
T Consensus 315 l~~PqKIFEIGkVFR~E~~~~thlREF~QL~~eIaG~~at---faDlealL~e~Lr~LGI-dfeit-E~ 378 (453)
T TIGR02367 315 LPDPIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGCT---RENLEAIIKDFLDHLEI-DFEIV-GD 378 (453)
T ss_pred ccCCeeEEEEcCeEecCCCCCCCcCeEEEEEEEEECCCCC---HHHHHHHHHHHHHHCCC-ceEEe-CC
Confidence 2569999999999999999999999999999999997432 34666799999999998 46663 44
No 58
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=99.49 E-value=7.9e-15 Score=170.72 Aligned_cols=143 Identities=21% Similarity=0.270 Sum_probs=120.1
Q ss_pred hhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhH-------------------HhhhhccCC--C--chh------
Q 003041 438 RDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMR-------------------ETLMGKYGE--D--SKL------ 488 (854)
Q Consensus 438 ~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~-------------------e~~~~~~g~--~--~k~------ 488 (854)
+|++|.+...+.++++.++++|..+||.||.+|.+|.. |+|.-+.+. . .+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~~v~~ 304 (489)
T PRK04172 225 PKIYPGKKHPYREFIDEVRDILVEMGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVERVKE 304 (489)
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHCCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCcccccCcHHHHHHHHH
Confidence 89999999999999999999999999999999999943 554333221 0 111
Q ss_pred -------------hhhhhhccCCceeeecccccchhhhhhhccccchhhhhhhhhhcccCCCCccccccccccccccccc
Q 003041 489 -------------IYDLADQGGELCSLRYDLTVPFARYVAMNGLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQY 555 (854)
Q Consensus 489 -------------~y~~~D~~G~~l~LRpDlT~~~aR~~a~~~~~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~ 555 (854)
+|.+.|+.++.++|||++|++++|+++.+...|+|+|++|+|||+|+++.+|.|||+|+++.++|..
T Consensus 305 ~he~g~~~~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~~~~~p~rlFeiGrVFR~e~~d~~~l~Ef~ql~~~i~G~~ 384 (489)
T PRK04172 305 VHEHGGDTGSRGWGYKWDEDIAKRLVLRTHTTALSARYLASRPEPPQKYFSIGRVFRPDTIDATHLPEFYQLEGIVMGED 384 (489)
T ss_pred HHhccCCCCCccccCCcchhhhhccccccCChHHHHHHHHhcCCCCeEEEEecceEcCCCCCcccCCchheEEEEEEeCC
Confidence 4666666778999999999999999998888899999999999999988889999999999999963
Q ss_pred cccCCChhhHHHHHHHhhhcCCCcceee
Q 003041 556 ERMGPDFEVVKILTELLNELDIGDYEIK 583 (854)
Q Consensus 556 ~~~~aDaEvI~l~~eil~~Lgl~~~~i~ 583 (854)
...+|++.++.+++..+|+.++.++
T Consensus 385 ---~~f~elkg~l~~ll~~lGi~~~~~~ 409 (489)
T PRK04172 385 ---VSFRDLLGILKEFYKRLGFEEVKFR 409 (489)
T ss_pred ---CCHHHHHHHHHHHHHHhCCceEEEc
Confidence 2368999999999999998655553
No 59
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [].; GO: 0000049 tRNA binding
Probab=99.40 E-value=1.8e-13 Score=146.66 Aligned_cols=97 Identities=27% Similarity=0.466 Sum_probs=87.5
Q ss_pred cccchhhhhhhhcCC--CccchHHHHHHHhhhccceeeeeh--hhHHHHHhhhhcCCCceEEEeeccc------ccccce
Q 003041 757 IRATETQVLVGLLGD--KLPLAAELVSELWNAKVKAEYMVH--KKVMKLIDRARESKIPWMVIVGERE------LNEGIV 826 (854)
Q Consensus 757 ~~~~~~dVlV~~~~~--~~~~a~~la~~Lr~~GI~ael~~~--~~l~k~l~~A~~~gi~~iviIg~~e------~~~g~V 826 (854)
|.+.+|||+||+++. .+..+++|+++||++||+||+.++ .++++.+.+|+..||+|+|+|++.+ -..+.|
T Consensus 1 W~~~RCDVLV~S~~~~~L~~~~~~iv~~LW~~gIsAd~~~~~~~S~Eel~~~~~~~gi~wiViikq~~~~~~~~~~~k~l 80 (273)
T PF12745_consen 1 WKPSRCDVLVCSFGPSSLRTEGIEIVQELWAAGISADLMYDASPSQEELQSYCREDGISWIVIIKQKEKSSSSKSKYKPL 80 (273)
T ss_pred CCCCcceEEEEeCChhHHHHHHHHHHHHHHHCCCceEeccccCCCHHHHHHHHHHCCCCEEEEEecccccccCCCccCce
Confidence 788999999999997 458999999999999999999764 4799999999999999999999975 223459
Q ss_pred eeeccccchhhhcchhhhHHHHHHhhc
Q 003041 827 KLKNIDTTQEEVISRSNFVEEIQRRLN 853 (854)
Q Consensus 827 ~Vk~l~~~~e~~v~~~elv~~L~~~l~ 853 (854)
|||++.++.+.+|+++||++||+++++
T Consensus 81 KVK~l~~~~e~dv~~~eLv~~l~~ei~ 107 (273)
T PF12745_consen 81 KVKSLEKKKETDVDRDELVDWLQQEIR 107 (273)
T ss_pred EEeccCCCcccccCHHHHHHHHHHHHH
Confidence 999999999999999999999999885
No 60
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=99.40 E-value=1.6e-13 Score=150.15 Aligned_cols=147 Identities=15% Similarity=0.196 Sum_probs=122.2
Q ss_pred CCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC---chhhhhhhhccCCceeeecccccc
Q 003041 433 LPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDLTVP 509 (854)
Q Consensus 433 ~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~~G~~l~LRpDlT~~ 509 (854)
...|+..|+|.++.+++.|++.+++.+.++||++|.||.|.+.++|.. +|++ .++||++.| +.++|+|+.+++
T Consensus 40 ~G~g~~~~~p~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l~~~-sg~~~~~~~~~f~v~~---~~~~L~pt~e~~ 115 (297)
T cd00770 40 SGSRFYYLKGDGALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEG-TGQLPKFDEQLYKVEG---EDLYLIATAEVP 115 (297)
T ss_pred CCCceeEECCHHHHHHHHHHHHHHHHHHHCCCEEEECcccccHHHHhh-cCcCccChhcccEecC---CCEEEeecCCHH
Confidence 345688899999999999999999999999999999999999999964 7764 368999965 679999999999
Q ss_pred hhhhhhh----ccccchhhhhhhhhhcccCC-C----Cc--cccccccccccccccccccCCC-hhhHHHHHHHhhhcCC
Q 003041 510 FARYVAM----NGLTSFKRHQIAKVYRRDNP-S----KG--RYREFYQCDFDIAGQYERMGPD-FEVVKILTELLNELDI 577 (854)
Q Consensus 510 ~aR~~a~----~~~~p~K~y~ig~VfR~e~p-~----~G--r~REf~Q~d~eiig~~~~~~aD-aEvI~l~~eil~~Lgl 577 (854)
++.+++. ++.+|+|+|++|++||+|.. . .| |.|||.|.+..+|+.++....+ .+++..+.++++.||+
T Consensus 116 ~~~l~~~~~~s~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~~f~~~e~~~~~~~~~l~~~~~i~~~lgl 195 (297)
T cd00770 116 LAALHRDEILEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFVFTKPEESWEELEELISNAEEILQELGL 195 (297)
T ss_pred HHHHHhcccCCHhhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEEEEECchHHHHHHHHHHHHHHHHHHHcCC
Confidence 9988875 35689999999999999954 2 34 8999999999999976432222 3678999999999999
Q ss_pred Ccceee
Q 003041 578 GDYEIK 583 (854)
Q Consensus 578 ~~~~i~ 583 (854)
.-..+.
T Consensus 196 ~~~~~~ 201 (297)
T cd00770 196 PYRVVN 201 (297)
T ss_pred cEEEEE
Confidence 633333
No 61
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=99.28 E-value=3.4e-12 Score=145.45 Aligned_cols=151 Identities=17% Similarity=0.193 Sum_probs=115.1
Q ss_pred HHHhHHHHHHHHHhcCccccCcc-hhHhH----H-hhhhc--cCCCchhhhhhhhc------------------------
Q 003041 448 REKAFSIITEVFKRHGAMALDTP-VFEMR----E-TLMGK--YGEDSKLIYDLADQ------------------------ 495 (854)
Q Consensus 448 ~~~i~~~l~~if~~~G~~eI~tP-~le~~----e-~~~~~--~g~~~k~~y~~~D~------------------------ 495 (854)
...+.+.++++|..-||.++.+| .+|.. | ++.+. -..+....|-+.++
T Consensus 231 l~~~~~~i~~if~~mGF~e~~~~~~ves~f~NFDaL~~PqdHPARd~~DTFyl~~~~~~~~~~~p~~~~~~Vk~~He~G~ 310 (494)
T PTZ00326 231 LLKVRREFREILLEMGFEEMPTNRYVESSFWNFDALFQPQQHPARDAQDTFFLSKPETSKVNDLDDDYVERVKKVHEVGG 310 (494)
T ss_pred HHHHHHHHHHHHHhCCCEEecCCCCccccchhhhhhcCCCCCCCCCcCceEEEcCccccccccCcHHHHHHHHHHhccCC
Confidence 36677779999999999999876 55542 1 22221 11111222333211
Q ss_pred -------------cCCceeeecccccchhhhhhhc-------cc-cchhhhhhhhhhcccCCCCcccccccccccccccc
Q 003041 496 -------------GGELCSLRYDLTVPFARYVAMN-------GL-TSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQ 554 (854)
Q Consensus 496 -------------~G~~l~LRpDlT~~~aR~~a~~-------~~-~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~ 554 (854)
..+.++||++.|++.+|+++++ .. .|.|+|++|+|||+|.++.+|++||+|++.+++|.
T Consensus 311 ~gS~Gw~y~W~~e~a~~~vLRtHtTa~~aR~l~~~~~~~~~~~~~~P~k~fsigrVfR~d~~DatH~~eFhQ~Eg~vi~~ 390 (494)
T PTZ00326 311 YGSIGWRYDWKLEEARKNILRTHTTAVSARMLYKLAQEYKKTGPFKPKKYFSIDRVFRNETLDATHLAEFHQVEGFVIDR 390 (494)
T ss_pred cCCcccccccccchhccccccCCCCHHHHHHHHhhccccccccCCCCceEEecCCEecCCCCCCCcCceeEEEEEEEEeC
Confidence 1246899999999999999975 22 48999999999999999999999999999999997
Q ss_pred ccccCCChhhHHHHHHHhhhcCCCc--ce-----------------------eeechhhhhh-hhhhhcCCCc
Q 003041 555 YERMGPDFEVVKILTELLNELDIGD--YE-----------------------IKLNHRLLLD-GMLEICGVPS 601 (854)
Q Consensus 555 ~~~~~aDaEvI~l~~eil~~Lgl~~--~~-----------------------i~Lnh~~ll~-~il~~~gi~~ 601 (854)
. .++++++.++.++++++|+.+ |. |+|++.++++ .+++.+|+++
T Consensus 391 ~---~s~~~L~~~l~~f~~~lG~~~~RfrP~yfPfTEPS~Ev~v~~~~~gkWIEIgg~Gm~rpevL~~~Gi~~ 460 (494)
T PTZ00326 391 N---LTLGDLIGTIREFFRRIGITKLRFKPAFNPYTEPSMEIFGYHPGLKKWVEVGNSGIFRPEMLRPMGFPE 460 (494)
T ss_pred C---CCHHHHHHHHHHHHHhcCCCceEEecCCCCCCCCeeEEEEEecCCCcEEEEeCcCccCHHHHHhcCCCC
Confidence 4 268999999999999998765 54 8889999998 8888888864
No 62
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=99.24 E-value=4.1e-12 Score=142.22 Aligned_cols=128 Identities=26% Similarity=0.331 Sum_probs=104.3
Q ss_pred HHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC-----chhhhhhhhccCCceeeecccccchhhhhhhc---c
Q 003041 447 VREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED-----SKLIYDLADQGGELCSLRYDLTVPFARYVAMN---G 518 (854)
Q Consensus 447 ~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~-----~k~~y~~~D~~G~~l~LRpDlT~~~aR~~a~~---~ 518 (854)
-..++++.|+++|..+||.||.||.|...+.|.. .+.. .+.+|.+ ++.++|||++|++++|+++.+ .
T Consensus 205 ~~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~-~g~~~g~~i~~~my~i----deel~LRpsLtPsLlr~la~n~k~~ 279 (417)
T PRK09537 205 YLGKLERDITKFFVDRGFLEIKSPILIPAEYIER-MGIDNDTELSKQIFRV----DKNFCLRPMLAPGLYNYLRKLDRIL 279 (417)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCeeecHHHHHH-hCCCCcccchhhheee----CCceEehhhhHHHHHHHHHhhhhcc
Confidence 3578889999999999999999999977665532 3322 2456664 246899999999999998854 3
Q ss_pred ccchhhhhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhhhcCCCcceee
Q 003041 519 LTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIGDYEIK 583 (854)
Q Consensus 519 ~~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~Lgl~~~~i~ 583 (854)
..|+|+|++|+|||+|.++.++.|||+|++++++|.... -.|+..++.++|+.||+ +|.+.
T Consensus 280 ~~P~RIFEIG~VFR~E~~g~~hlrEf~Ql~~~iiGs~~~---f~dL~~lleeLL~~LGI-~f~i~ 340 (417)
T PRK09537 280 PDPIKIFEIGPCYRKESDGKEHLEEFTMVNFCQMGSGCT---RENLENIIDDFLKHLGI-DYEII 340 (417)
T ss_pred cCCeeEEEEeceEecCCCCCCCcceEEEEEEEEeCCchH---HHHHHHHHHHHHHHCCC-CcEEe
Confidence 579999999999999988888999999999999986422 35788999999999998 46666
No 63
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=99.24 E-value=4.2e-12 Score=114.73 Aligned_cols=88 Identities=32% Similarity=0.502 Sum_probs=81.0
Q ss_pred hhhhhhcCC----CccchHHHHHHHhhhccceeeee-hhhHHHHHhhhhcCCCceEEEeecccccccceeeeccccchhh
Q 003041 763 QVLVGLLGD----KLPLAAELVSELWNAKVKAEYMV-HKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEE 837 (854)
Q Consensus 763 dVlV~~~~~----~~~~a~~la~~Lr~~GI~ael~~-~~~l~k~l~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~ 837 (854)
||+|++++. ....+.++++.||++||++++++ +.++++++++|...|+||+++||++|.++++|+||++.++++.
T Consensus 1 qv~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~~~~~~~k~~~~a~~~g~p~~iiiG~~e~~~~~v~vk~~~~~~~~ 80 (94)
T PF03129_consen 1 QVVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDDSDKSLGKQIKYADKLGIPFIIIIGEKELENGTVTVKDRDTGEQE 80 (94)
T ss_dssp SEEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEESSSSTHHHHHHHHHHTTESEEEEEEHHHHHTTEEEEEETTTTEEE
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCchhHHHHHHhhcCCeEEEEECchhHhCCEEEEEECCCCcEE
Confidence 467777776 35789999999999999999997 5689999999999999999999999999999999999999999
Q ss_pred hcchhhhHHHHHH
Q 003041 838 VISRSNFVEEIQR 850 (854)
Q Consensus 838 ~v~~~elv~~L~~ 850 (854)
.|+++|++++|++
T Consensus 81 ~v~~~el~~~l~~ 93 (94)
T PF03129_consen 81 TVSLEELIEYLKE 93 (94)
T ss_dssp EEECCHHHHHHHH
T ss_pred EEEHHHHHHHHhh
Confidence 9999999999986
No 64
>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=2e-10 Score=126.14 Aligned_cols=121 Identities=19% Similarity=0.211 Sum_probs=99.7
Q ss_pred ccceehhhHHHHHHHHHHHHh----hh---hcccc--chhhhhhhhcCC---CccchHHHHHHHhhhccceeeee-hhhH
Q 003041 732 AVGVSLGIERVFTIMEQIQKE----RN---QIIRA--TETQVLVGLLGD---KLPLAAELVSELWNAKVKAEYMV-HKKV 798 (854)
Q Consensus 732 AvGfsigieRL~~~L~~~~~~----~~---~~~~~--~~~dVlV~~~~~---~~~~a~~la~~Lr~~GI~ael~~-~~~l 798 (854)
.+--|+|+-||+-.|.++.-. .. -.++| +|++|.|.+... .......+.+.|+++||++.++. ..++
T Consensus 459 VIEPSfGiGRI~Y~l~EHsF~R~~de~R~~~sfpp~vAPiK~~v~pls~n~ef~pv~~~ls~~L~~~gis~kvdds~~SI 538 (599)
T KOG2298|consen 459 VIEPSFGIGRISYQLTEHSFTRKGDEQRKVLSFPPLVAPIKVALDPLSPNLEFRPVCQGLSNELTENGISVKVDDSSSSI 538 (599)
T ss_pred cccccchhhHHHHHHHhhhhccCcccccceeccCccccceEEEEEeccCchhHHHHHHHHHHHHHhCCCeEEecCCCCcH
Confidence 345788999999998875211 00 01222 678888887775 45678899999999999999987 4689
Q ss_pred HHHHhhhhcCCCceEEEeecccccccceeeeccccchhhhcchhhhHHHHHHhh
Q 003041 799 MKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 852 (854)
Q Consensus 799 ~k~l~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l 852 (854)
++.+...++.|+||-|.|..+.+++++|++|++++-.|..+..+++...+.+.+
T Consensus 539 GrrYAr~DElgipFgiTvDfdtlk~~tVTlReRdS~~QvR~~i~e~~s~v~~~~ 592 (599)
T KOG2298|consen 539 GRRYARTDELGIPFGVTVDFDTLKNGTVTLRERDSTMQVRMHISKLKSFLIKYI 592 (599)
T ss_pred hhhhhccccccCceEEEEchhhhcCceEEEeecccHHHHHhhHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999887765
No 65
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.17 E-value=1.8e-11 Score=116.19 Aligned_cols=97 Identities=19% Similarity=0.218 Sum_probs=87.4
Q ss_pred ccccchhhhhhhhcC--C-CccchHHHHHHHhhhccceeeeehhhHHHHHhhhhcCCCceEEEeecccccccceeeeccc
Q 003041 756 IIRATETQVLVGLLG--D-KLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNID 832 (854)
Q Consensus 756 ~~~~~~~dVlV~~~~--~-~~~~a~~la~~Lr~~GI~ael~~~~~l~k~l~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~ 832 (854)
.|. +|.+|+|++.+ + ....++++++.||++|++|++++..++++++++|++.|++|+++||++|.++++|+||++.
T Consensus 22 ~~l-ap~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~~~sl~kqlk~A~k~g~~~~iiiG~~e~~~~~v~lk~l~ 100 (121)
T cd00858 22 PAL-APIKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDDSGSIGRRYARQDEIGTPFCVTVDFDTLEDGTVTIRERD 100 (121)
T ss_pred CCc-CCcEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeCCCCHHHHHHHhHhcCCCEEEEECcCchhCCEEEEEECC
Confidence 344 47899999988 5 5678999999999999999997665599999999999999999999999999999999999
Q ss_pred cchhhhcchhhhHHHHHHhhc
Q 003041 833 TTQEEVISRSNFVEEIQRRLN 853 (854)
Q Consensus 833 ~~~e~~v~~~elv~~L~~~l~ 853 (854)
++++..++++++++.+...+|
T Consensus 101 ~~~~~~v~l~~l~~~l~~~~~ 121 (121)
T cd00858 101 SMRQVRVKIEELPSYLRELIR 121 (121)
T ss_pred CCceEEEEHHHHHHHHHHHhC
Confidence 999999999999999987765
No 66
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.15 E-value=1.8e-11 Score=126.40 Aligned_cols=129 Identities=22% Similarity=0.280 Sum_probs=104.0
Q ss_pred HHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhhhccCCceeeecccccchhhhhhhcc-ccchhhhh
Q 003041 448 REKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNG-LTSFKRHQ 526 (854)
Q Consensus 448 ~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D~~G~~l~LRpDlT~~~aR~~a~~~-~~p~K~y~ 526 (854)
++.+++.+++.|..+||+||.||.|++.+.+.. .+...+.++.+.+.+++..+|||++|+++++.++.|. ..|.|+|+
T Consensus 2 ~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~~~~~~~lfe 80 (211)
T cd00768 2 RSKIEQKLRRFMAELGFQEVETPIVEREPLLEK-AGHEPKDLLPVGAENEEDLYLRPTLEPGLVRLFVSHIRKLPLRLAE 80 (211)
T ss_pred HHHHHHHHHHHHHHcCCEEeEcceecHHHHHHH-cCccHhheeeeecCCCCEEEECCCCcHHHHHHHHhhcccCCEEEEE
Confidence 577888999999999999999999999876643 3433334555566788999999999999999998763 56899999
Q ss_pred hhhhhcccCCCC--ccccccccccccccccccc-cCCChhhHHHHHHHhhhcCC
Q 003041 527 IAKVYRRDNPSK--GRYREFYQCDFDIAGQYER-MGPDFEVVKILTELLNELDI 577 (854)
Q Consensus 527 ig~VfR~e~p~~--Gr~REf~Q~d~eiig~~~~-~~aDaEvI~l~~eil~~Lgl 577 (854)
+|+|||.|.... .|.+||.|.+++++|.... .....|++.++.++++.+|+
T Consensus 81 ig~vfr~e~~~~~~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~~lg~ 134 (211)
T cd00768 81 IGPAFRNEGGRRGLRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLRALGI 134 (211)
T ss_pred EcceeecCCCccccccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHHHcCC
Confidence 999999876543 5789999999999996431 01246889999999999986
No 67
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.11 E-value=2.6e-11 Score=109.37 Aligned_cols=89 Identities=27% Similarity=0.296 Sum_probs=79.4
Q ss_pred hhhhhhhhcCC----CccchHHHHHHHhhhccceeeee-hhhHHHHHhhhhcCCCceEEEeecccccccceeeeccccch
Q 003041 761 ETQVLVGLLGD----KLPLAAELVSELWNAKVKAEYMV-HKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQ 835 (854)
Q Consensus 761 ~~dVlV~~~~~----~~~~a~~la~~Lr~~GI~ael~~-~~~l~k~l~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~ 835 (854)
|.+|.|++..+ ...++.++++.||++|+++++++ ..++++++++|++.|++|+++||++|+++++|+||++.+++
T Consensus 1 P~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~~~~l~k~i~~a~~~g~~~~iiiG~~e~~~~~v~vk~~~~~~ 80 (94)
T cd00861 1 PFDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDRNERPGVKFADADLIGIPYRIVVGKKSAAEGIVEIKVRKTGE 80 (94)
T ss_pred CeEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCCcccchhHHHhcCCCEEEEECCchhhCCEEEEEECCCCc
Confidence 45777877764 45689999999999999999987 45799999999999999999999999999999999999999
Q ss_pred hhhcchhhhHHHHH
Q 003041 836 EEVISRSNFVEEIQ 849 (854)
Q Consensus 836 e~~v~~~elv~~L~ 849 (854)
+..+++++++++|+
T Consensus 81 ~~~~~~~~~~~~l~ 94 (94)
T cd00861 81 KEEISIDELLEFLQ 94 (94)
T ss_pred ceEEeHHHHHHhhC
Confidence 99999999988763
No 68
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=99.11 E-value=4.1e-11 Score=136.76 Aligned_cols=148 Identities=17% Similarity=0.219 Sum_probs=120.2
Q ss_pred CCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC---chhhhhhhhccCCceeeecccccc
Q 003041 433 LPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDLTVP 509 (854)
Q Consensus 433 ~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~~G~~l~LRpDlT~~ 509 (854)
...|++-|.|.++.+++.+++.+.+.+.++||++|.+|.|.+.++|.. +|++ .++||++.| +.++|+|....|
T Consensus 161 ~G~g~~~~~p~g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~~-~G~~~~f~~~~y~i~~---~~~~L~pTsE~~ 236 (418)
T TIGR00414 161 TGSRFYYLKNDGAKLERALINFMLDLLEKNGYQEIYPPYLVNEESLDG-TGQLPKFEEDIFKLED---TDLYLIPTAEVP 236 (418)
T ss_pred CCCCeeeeccHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhh-cCccccccccceEecC---CCEEEEeCCcHH
Confidence 345688899999999999999999999999999999999999998854 7765 368998854 458999999999
Q ss_pred hhhhhhh----ccccchhhhhhhhhhcccCCC-----Cc--cccccccccccccccccccCCC-hhhHHHHHHHhhhcCC
Q 003041 510 FARYVAM----NGLTSFKRHQIAKVYRRDNPS-----KG--RYREFYQCDFDIAGQYERMGPD-FEVVKILTELLNELDI 577 (854)
Q Consensus 510 ~aR~~a~----~~~~p~K~y~ig~VfR~e~p~-----~G--r~REf~Q~d~eiig~~~~~~aD-aEvI~l~~eil~~Lgl 577 (854)
++-+++. ++.+|+|+|+++++||+|... .| |.|||.+.+..+|+.++....+ .+++..+.++++.||+
T Consensus 237 ~~~~~~~~i~s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~~~f~~~e~s~~~~~~~~~~~~~i~~~Lgl 316 (418)
T TIGR00414 237 LTNLHRNEILEEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELVKFCKPEESAEELEEMTSDAEQILQELEL 316 (418)
T ss_pred HHHHHhCcCCChHhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeEEEEcCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9877764 346899999999999999632 23 9999999999999986543223 3578899999999999
Q ss_pred Ccceeee
Q 003041 578 GDYEIKL 584 (854)
Q Consensus 578 ~~~~i~L 584 (854)
.-..+.+
T Consensus 317 p~r~v~~ 323 (418)
T TIGR00414 317 PYRVVNL 323 (418)
T ss_pred ceEEEec
Confidence 5233344
No 69
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.09 E-value=6.4e-11 Score=105.93 Aligned_cols=88 Identities=30% Similarity=0.472 Sum_probs=79.6
Q ss_pred hhhhhhhhcCC-CccchHHHHHHHhhhccceeeee-hhhHHHHHhhhhcCCCceEEEeecccccccceeeeccccchhhh
Q 003041 761 ETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMV-HKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEV 838 (854)
Q Consensus 761 ~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~-~~~l~k~l~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~ 838 (854)
|.+|+|++.++ ....++++++.||+.|++|+++. ..++++++++|++.|+++++++|++|..++.+++|++.++++..
T Consensus 1 p~~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~d~~~~~~~~~~~~a~~~g~~~~iiig~~e~~~~~v~lk~~~~~~~~~ 80 (91)
T cd00860 1 PVQVVVIPVTDEHLDYAKEVAKKLSDAGIRVEVDLRNEKLGKKIREAQLQKIPYILVVGDKEVETGTVSVRTRDGGDLGS 80 (91)
T ss_pred CeEEEEEeeCchHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEECCCCccce
Confidence 45778887776 67789999999999999999987 46799999999999999999999999999999999999999999
Q ss_pred cchhhhHHHH
Q 003041 839 ISRSNFVEEI 848 (854)
Q Consensus 839 v~~~elv~~L 848 (854)
++++++++.|
T Consensus 81 ~~~~~~~~~~ 90 (91)
T cd00860 81 MSLDEFIEKL 90 (91)
T ss_pred EcHHHHHHHh
Confidence 9999988765
No 70
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=99.02 E-value=1.5e-10 Score=132.54 Aligned_cols=146 Identities=15% Similarity=0.219 Sum_probs=120.5
Q ss_pred CCCccchhhHHhHHHHHHHhHHHHHHHHH-hcCccccCcchhHhHHhhhhccCCC---chhhhhhhhccCCceeeecccc
Q 003041 432 KLPKGTRDFAKEQMAVREKAFSIITEVFK-RHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDLT 507 (854)
Q Consensus 432 ~~p~G~~D~lp~~~~~~~~i~~~l~~if~-~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~~G~~l~LRpDlT 507 (854)
....|++.|.|.++.+++.+.+.+.+... ++||++|.||.|.+.++|.. +|++ .++||++. ++.+.|+|...
T Consensus 157 ~~G~g~~~l~p~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~-~G~~~~f~~~ly~i~---~~~~~L~pTsE 232 (425)
T PRK05431 157 VSGSRFYVLKGDGARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESMYG-TGQLPKFEEDLYKIE---DDDLYLIPTAE 232 (425)
T ss_pred cCCceeEEECcHHHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHHhh-cCccccchhhceEec---CCCEEEEeCCc
Confidence 34567888999999999999999988887 99999999999999998865 6765 36799885 36789999999
Q ss_pred cchhhhhhh----ccccchhhhhhhhhhcccCCC-----Cc--cccccccccccccccccccCCC-hhhHHHHHHHhhhc
Q 003041 508 VPFARYVAM----NGLTSFKRHQIAKVYRRDNPS-----KG--RYREFYQCDFDIAGQYERMGPD-FEVVKILTELLNEL 575 (854)
Q Consensus 508 ~~~aR~~a~----~~~~p~K~y~ig~VfR~e~p~-----~G--r~REf~Q~d~eiig~~~~~~aD-aEvI~l~~eil~~L 575 (854)
.+++.+++. ++.+|+|+|+++++||+|... .| |.|||++.+.++|+.++....+ .+++.++.++++.|
T Consensus 233 ~~l~~l~~~~~~s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~~f~~~e~s~~~~~~~l~~~~~i~~~L 312 (425)
T PRK05431 233 VPLTNLHRDEILDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELVKFTKPEDSYAELEELTANAEEILQKL 312 (425)
T ss_pred HHHHHHHhcccCCHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEEEEECHHHHHHHHHHHHHHHHHHHHHc
Confidence 999887774 356899999999999999632 34 8999999999999986543223 35788999999999
Q ss_pred CCCccee
Q 003041 576 DIGDYEI 582 (854)
Q Consensus 576 gl~~~~i 582 (854)
|+. |.+
T Consensus 313 glp-yr~ 318 (425)
T PRK05431 313 ELP-YRV 318 (425)
T ss_pred CCc-EEE
Confidence 995 554
No 71
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=98.99 E-value=2.9e-10 Score=117.51 Aligned_cols=94 Identities=20% Similarity=0.255 Sum_probs=85.1
Q ss_pred chhhhhhhhcCC-------CccchHHHHHHHhhhccceeeee-hh-hHHHHHhhhhcCCCceEEEeecccccccceeeec
Q 003041 760 TETQVLVGLLGD-------KLPLAAELVSELWNAKVKAEYMV-HK-KVMKLIDRARESKIPWMVIVGERELNEGIVKLKN 830 (854)
Q Consensus 760 ~~~dVlV~~~~~-------~~~~a~~la~~Lr~~GI~ael~~-~~-~l~k~l~~A~~~gi~~iviIg~~e~~~g~V~Vk~ 830 (854)
+|.||+|++++. ...++.++++.||++||+|+++. +. +++++|+++...|+|++|+||++|+++|+|+|++
T Consensus 9 AP~qVvIipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~r~~~s~g~K~~~ae~~GvP~~I~IG~~Ele~g~V~v~~ 88 (202)
T cd00862 9 APIQVVIVPIGIKDEKREEVLEAADELAERLKAAGIRVHVDDRDNYTPGWKFNDWELKGVPLRIEIGPRDLEKNTVVIVR 88 (202)
T ss_pred cCceEEEEEecCCccchHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHhHHHHHHHhCCCCEEEEECcchhhCCEEEEEE
Confidence 689999999864 24578999999999999999988 55 8999999999999999999999999999999999
Q ss_pred cccchhhhcchhhhHHHHHHhhc
Q 003041 831 IDTTQEEVISRSNFVEEIQRRLN 853 (854)
Q Consensus 831 l~~~~e~~v~~~elv~~L~~~l~ 853 (854)
+.++++..++++++++.+.+.+.
T Consensus 89 Rd~~ek~~v~~~el~~~i~~ll~ 111 (202)
T cd00862 89 RDTGEKKTVPLAELVEKVPELLD 111 (202)
T ss_pred ecCCcceEEEHHHHHHHHHHHHH
Confidence 99999999999999988876653
No 72
>PRK14938 Ser-tRNA(Thr) hydrolase; Provisional
Probab=98.99 E-value=4.1e-10 Score=123.82 Aligned_cols=116 Identities=16% Similarity=0.256 Sum_probs=96.9
Q ss_pred ehhhHHHHHHHHH-HHHhhhhcccc--chhhhhhhhcCC-CccchHHHHHHHhhhccceeeee-hhhHHHHHhhhhcCCC
Q 003041 736 SLGIERVFTIMEQ-IQKERNQIIRA--TETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMV-HKKVMKLIDRARESKI 810 (854)
Q Consensus 736 sigieRL~~~L~~-~~~~~~~~~~~--~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~-~~~l~k~l~~A~~~gi 810 (854)
-+.+||++.++.. ...+..+.||+ +|.+|+|++.++ ....++++++.||++||+|+++. ..++++++++|++.|+
T Consensus 246 ~~~~~r~~~~~L~~a~~e~~~~LPpwLAP~qV~IIpl~eel~e~AlkLA~eLR~aGIrVeiDl~srSLgKQiK~AdK~Ga 325 (387)
T PRK14938 246 YVDVGLLVYYFLLESIRKQPPTLPDWLNPIQVRILPVKKDFLDFSIQVAERLRKEGIRVNVDDLDDSLGNKIRRAGTEWI 325 (387)
T ss_pred EEEecHHHHHHHHHhhhHHhCcCCCccCcceEEEEEeChHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCC
Confidence 3567888766533 22222333443 588999999886 56789999999999999999987 5679999999999999
Q ss_pred ceEEEeecccccccceeeeccccchhhhcchhhhHHHHHHh
Q 003041 811 PWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRR 851 (854)
Q Consensus 811 ~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~ 851 (854)
+|+++||++|+++++|+||++.++++..+++++++++++++
T Consensus 326 PfvIIIGedEle~gtVtIKdrdTgEQ~~IsLdELie~Lkk~ 366 (387)
T PRK14938 326 PFVIIIGEREVKTSTLTVKIRANNEQKSMTVEELVKEIKRA 366 (387)
T ss_pred CEEEEECchhhhCCeEEEEECCCCceEEEeHHHHHHHHHhC
Confidence 99999999999999999999999999999999999988753
No 73
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity. Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase.
Probab=98.90 E-value=9e-10 Score=105.48 Aligned_cols=101 Identities=20% Similarity=0.260 Sum_probs=88.1
Q ss_pred hhhcccc--chhhhhhhhcCC----CccchHHHHHHHhhhccceeeee-hh---hHHHHHhhhhcCCCceEEEeeccccc
Q 003041 753 RNQIIRA--TETQVLVGLLGD----KLPLAAELVSELWNAKVKAEYMV-HK---KVMKLIDRARESKIPWMVIVGERELN 822 (854)
Q Consensus 753 ~~~~~~~--~~~dVlV~~~~~----~~~~a~~la~~Lr~~GI~ael~~-~~---~l~k~l~~A~~~gi~~iviIg~~e~~ 822 (854)
....||+ +|++|.|++.+. ....+.++++.|+++||++.++. +. +++++|+.++..|+||.|+||++.++
T Consensus 17 ~Gl~~P~~iAP~qV~Iipi~~~~~~~~~~a~~l~~~L~~~gi~v~~D~r~~~~~~~G~k~~~~dliGiP~~I~IG~~~l~ 96 (128)
T cd02426 17 QVLKLHPCLAPYKVAIDCGKGDTAELRDLCQGLKNELREAGLSVWPGYLETQHSSLEQLLDKYDEMGVLFTLLISEQTLE 96 (128)
T ss_pred cEEECCCCCCCeEEEEEeccCChHHHHHHHHHHHHHHHHcCCEEEeccCcccccCHHHHHHhhhhcCCCEEEEECCCccc
Confidence 4456777 699999998842 34668889999999999998876 33 79999999999999999999999999
Q ss_pred ccceeeeccccchhhhcchhhhHHHHHHhhc
Q 003041 823 EGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 853 (854)
Q Consensus 823 ~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~ 853 (854)
+|+|+++++.++++..|+.+++++++.+.+.
T Consensus 97 ~g~vei~~Rdt~~k~~v~~~~l~~~i~~~~~ 127 (128)
T cd02426 97 NGLLQLRSRDTTLKETIHISDLPDYLLRYIA 127 (128)
T ss_pred CCEEEEEECCCCceEEEeHHHHHHHHHHHhh
Confidence 9999999999999999999999999987653
No 74
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=98.86 E-value=1.4e-09 Score=97.68 Aligned_cols=88 Identities=27% Similarity=0.371 Sum_probs=77.3
Q ss_pred hhhhhhhhcCC----CccchHHHHHHHhhhccceeeeeh-hhHHHHHhhhhcCCCceEEEeecccccccceeeeccccch
Q 003041 761 ETQVLVGLLGD----KLPLAAELVSELWNAKVKAEYMVH-KKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQ 835 (854)
Q Consensus 761 ~~dVlV~~~~~----~~~~a~~la~~Lr~~GI~ael~~~-~~l~k~l~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~ 835 (854)
|.+|+|++.++ ....++++++.||+.|++++++.. .++++++++|++.|++|++++|++|+.++++.+|++.+++
T Consensus 1 p~~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~~~~~~~k~~~~a~~~g~~~~iiig~~e~~~~~v~i~~~~~~~ 80 (94)
T cd00738 1 PIDVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDDRERKIGKKFREADLRGVPFAVVVGEDELENGKVTVKSRDTGE 80 (94)
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecCCCcCHhHHHHHHHhCCCCEEEEECCChhhCCEEEEEECCCCc
Confidence 34677776654 457889999999999999999874 6799999999999999999999999999999999999999
Q ss_pred hhhcchhhhHHHH
Q 003041 836 EEVISRSNFVEEI 848 (854)
Q Consensus 836 e~~v~~~elv~~L 848 (854)
+..++++++++.+
T Consensus 81 ~~~~~~~~~~~~i 93 (94)
T cd00738 81 SETLHVDELPEFL 93 (94)
T ss_pred eeEEEHHHHHhhc
Confidence 9999999987654
No 75
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=98.82 E-value=2.3e-09 Score=123.69 Aligned_cols=150 Identities=15% Similarity=0.089 Sum_probs=116.8
Q ss_pred CCCccchhhHHhHHHHHHHhHHHHHHH-HHhcCccccCcchhHhHHhhhhccCCC---chhhhhhhhc------------
Q 003041 432 KLPKGTRDFAKEQMAVREKAFSIITEV-FKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQ------------ 495 (854)
Q Consensus 432 ~~p~G~~D~lp~~~~~~~~i~~~l~~i-f~~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~------------ 495 (854)
-..+|++-|.|.++.+++.+++.+++. ++++||+++.+|.|.+.++|.. +|+. .++||.+...
T Consensus 210 ~~G~G~~~~~p~Ga~L~~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~k-sGhl~~F~e~my~V~~~~~d~e~~~~~~~ 288 (517)
T PRK00960 210 FPGRGQWFYTPPMTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYK-MRYLEGLPEGMYYVCPPKRDPEYFEEFVD 288 (517)
T ss_pred cCCCceEEEEChHHHHHHHHHHHHHHhhHhhcCCeEEECCcccCHHHHhh-cCCccCChhhceEeeccccccccccchhh
Confidence 347899999999999999999999875 7889999999999999999865 5764 3678866311
Q ss_pred -----------------cCCceeeecccccchhhhhhh----ccccchhhhh-hhhhhcccCC-CC--cccccccccccc
Q 003041 496 -----------------GGELCSLRYDLTVPFARYVAM----NGLTSFKRHQ-IAKVYRRDNP-SK--GRYREFYQCDFD 550 (854)
Q Consensus 496 -----------------~G~~l~LRpDlT~~~aR~~a~----~~~~p~K~y~-ig~VfR~e~p-~~--Gr~REf~Q~d~e 550 (854)
....++|||..|+++.-+++. +..+|+|+|. .|+|||+|.. -. -|.|||+|.+..
T Consensus 289 ~l~~T~Evpl~~~~~~L~~~~yvLrPa~Cp~~y~~~~~~ils~rdLPLrl~e~sG~cFR~EsGs~~GL~RV~eF~kvE~h 368 (517)
T PRK00960 289 EMMVKKEVPIEKLKEKLRDPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGWTYRWEGGGAHGLERVNEFHRIEIV 368 (517)
T ss_pred hccccccccccccccccccccccccccCcHHHHHHHhCCcCChhhCCHHHhhccCCceeCCCCCCCCCcccceeEEEEEE
Confidence 134679999999999766653 3567999998 6799999952 12 399999999999
Q ss_pred ccccccccCCCh-hhHHHHHHHhhhcCCCccee
Q 003041 551 IAGQYERMGPDF-EVVKILTELLNELDIGDYEI 582 (854)
Q Consensus 551 iig~~~~~~aDa-EvI~l~~eil~~Lgl~~~~i 582 (854)
+||.++....+. +++..+.++++.||+.-+.+
T Consensus 369 ~f~tpEqs~ee~e~ll~~~e~i~~~LgLp~~r~ 401 (517)
T PRK00960 369 WLGTPEQVEEIRDELLKYAHILAEKLDLEYWRE 401 (517)
T ss_pred EEeCHHHHHHHHHHHHHHHHHHHHHcCCCceEE
Confidence 999876533332 45677888889999842333
No 76
>PRK09350 poxB regulator PoxA; Provisional
Probab=98.82 E-value=1.9e-09 Score=118.43 Aligned_cols=142 Identities=18% Similarity=0.241 Sum_probs=96.9
Q ss_pred HHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhhh-ccCCceeee--cccccchhhhhhhcccc
Q 003041 444 QMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLAD-QGGELCSLR--YDLTVPFARYVAMNGLT 520 (854)
Q Consensus 444 ~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D-~~G~~l~LR--pDlT~~~aR~~a~~~~~ 520 (854)
-.+++..+.+.+++.|.++||.||.||+|++........ ..-+.-|.+.| ..|+.+.|| |+++ +.|.++..
T Consensus 4 ~l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~~~~~-~~f~~~y~~~~~~~~~~~~L~~SPe~~--~kr~la~~--- 77 (306)
T PRK09350 4 NLLKRAKIIAEIRRFFADRGVLEVETPILSQATVTDIHL-VPFETRFVGPGASQGKTLWLMTSPEYH--MKRLLAAG--- 77 (306)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeEecccCCCccC-CceeeeeccccccCCcceEEecCHHHH--HHHHhhcc---
Confidence 457889999999999999999999999998654321100 00111155555 568999999 9998 77777654
Q ss_pred chhhhhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhhhc-CCCcceeeechhhhhhhhhhhcCC
Q 003041 521 SFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNEL-DIGDYEIKLNHRLLLDGMLEICGV 599 (854)
Q Consensus 521 p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~L-gl~~~~i~Lnh~~ll~~il~~~gi 599 (854)
.-|+||+|+|||+|.+..+|..||+|++++..+. + --+++.++.+++..+ ...++. +++. -+++..++|+
T Consensus 78 ~~rvf~i~~~FR~e~~~~~H~~EFt~lE~y~~~~-d----~~dlm~~~E~li~~i~~~~~~~-~i~~---~eaf~~~~g~ 148 (306)
T PRK09350 78 SGPIFQICKSFRNEEAGRYHNPEFTMLEWYRPHY-D----MYRLMNEVDDLLQQVLDCEPAE-SLSY---QQAFLRYLGI 148 (306)
T ss_pred ccceEEecceeecCCCCCCCCcHHHhhhhhhhCC-C----HHHHHHHHHHHHHHHHhcCCce-EEEH---HHHHHHHhCC
Confidence 2399999999999988888999999999998875 2 135555555555432 223342 2332 2344455555
Q ss_pred C
Q 003041 600 P 600 (854)
Q Consensus 600 ~ 600 (854)
+
T Consensus 149 ~ 149 (306)
T PRK09350 149 D 149 (306)
T ss_pred C
Confidence 3
No 77
>cd01594 Lyase_I_like Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions. Lyase class I_like superfamily of enzymes that catalyze beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. This superfamily contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase. The lyase class I family comprises proteins similar to class II fumarase, aspartase, adenylosuccinate lyase, argininosuccinate lyase, and 3-carboxy-cis, cis-muconate lactonizing enzyme which, for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. Histidine or phenylalanine ammonia-lyase catalyze a beta-elimination of ammonia from histidine and phenylalanine, respective
Probab=98.79 E-value=7.5e-09 Score=109.10 Aligned_cols=199 Identities=16% Similarity=-0.028 Sum_probs=141.0
Q ss_pred hHHHHHHHHHHHhcCCCcchhHHHHHHHhhcccccceecceeeecccceeeeeccCcchhhhchhhhccccchhhhHHHH
Q 003041 72 SRAFLTVLLNKLLLGSSIRTAFAVLISETLNSQTETLQFESVDVTEDERIVLEKLSLPSVLSGICAVLDHKSSALSAIID 151 (854)
Q Consensus 72 vRa~m~~rln~l~~G~SG~~~~~~l~~~~~~~g~~~~~~~p~~l~~ke~~~l~~~~~~~~~~a~~~l~~~~a~~l~~~a~ 151 (854)
+|++|.+|+|.+..| ....+....... .-+.+..+ +..+++... ...++.+.+.+..++.++.+++....
T Consensus 1 ~~~~~~i~~a~~~~~-----i~~~L~~~~~~~-~~~~~~~~--~~h~g~s~~--d~~~t~~~~~~~~~l~~l~~~l~~~~ 70 (231)
T cd01594 1 VRADLLVELAAALAL-----VEEVLAGRAGEL-AGGLHGSA--LVHKGRSSN--DIGTTALRLALRDALDDLLPLLKALI 70 (231)
T ss_pred CHHHHHHHHHHHHHH-----HHHHHHHHHHHH-hccccCCC--CCCCCCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999 212222221110 11112211 556775322 23356777788888889999999999
Q ss_pred HHHhhccccccCcccccccccCCCCccccccccccccceeeecCceeeeeeccccccccccccchHHHHHHHhhccceEE
Q 003041 152 AVAALSCEASGADVAAFNSIDSGDGFTAKEEIGVAGDLKVLLNGSKLVGKMKSEDILEIPKINGKLREVVKSVHSSTRVE 231 (854)
Q Consensus 152 ~~~Als~eal~g~~~~f~~~~~~~~rph~gq~~~A~~~r~lL~gs~~~~~~D~yslRc~Pqv~Ga~~d~l~~~~~~~~~E 231 (854)
.+.+...|+.++++.|+.+... .+.| .+|+|+|||.||++|..+|.+..+
T Consensus 71 ~~l~~~a~~~~~~~~~~~th~q-~A~p----------------------~t~g~~~~~~~~~l~~~~~rL~~~------- 120 (231)
T cd01594 71 DALALKAEAHKGTVMPGRTHLQ-DAQP----------------------VTLGYELRAWAQVLGRDLERLEEA------- 120 (231)
T ss_pred HHHHHHHHHhcCCEeecccccc-cCcc----------------------ccHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 9999999999999999998532 2223 148999999999999999999999
Q ss_pred ecccceeccccchhhHhhhHHHHHHHHHhhcccchhhhcccccccCcccccccc--cccC---------------CCchh
Q 003041 232 LNSSVKVGISGTAKAVGANALALAAAIHNLGESSLYRAKMNLNSINSDGLRSLF--EKDC---------------SSGDN 294 (854)
Q Consensus 232 lNs~~~~~~~~~~~~~~~~~d~l~~a~~~l~~~serr~~~l~~~~~~~gLp~fL--~~~~---------------~~~~~ 294 (854)
++...+|.|+++++.+++++++++.++.++... ..|+|+ .+|+ .++..
T Consensus 121 --------------~~~~~~~~l~~~~~~l~r~a~d~~~~~~~~~~~-~~~~~~~~~~gSS~mp~k~Np~~~e~~~~~~~ 185 (231)
T cd01594 121 --------------AVAEALDALALAAAHLSKIAEDLRLLLSGEFGE-LGEPFLPGQPGSSIMPQKVNPVAAELVRGLAG 185 (231)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCe-eeCccCCCCCCCcCCCCCCCCHHHHHHHHHHH
Confidence 578889999999999999999999999998776 557776 2331 11111
Q ss_pred hhh---HHHHhhhc----cchhhHHHHHHHhhhhhhhH
Q 003041 295 LRK---TYKLVLDA----NFEEDYVKFLHEANVLLGMV 325 (854)
Q Consensus 295 l~~---~~~~~~s~----~~~edh~s~~~~~~~~~~~~ 325 (854)
++. ....+++. +..+|+.++....++.+..+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 223 (231)
T cd01594 186 LVIGNLVAVLTALKGGPERDNEDSPSMREILADSLLLL 223 (231)
T ss_pred HHHhhHHHHHHHHhcccccccccCHHHHHHHHHHHHHH
Confidence 111 12333331 34799999999887776554
No 78
>PLN02678 seryl-tRNA synthetase
Probab=98.76 E-value=4.1e-09 Score=120.32 Aligned_cols=144 Identities=13% Similarity=0.178 Sum_probs=108.1
Q ss_pred hhHH-hHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC---chhhhhhhhccCCceeeec---ccccchh
Q 003041 439 DFAK-EQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRY---DLTVPFA 511 (854)
Q Consensus 439 D~lp-~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~~G~~l~LRp---DlT~~~a 511 (854)
.|++ .++.+.+.+.+.+.+...++||++|.||.|...++|.. +|++ .++||++.+.+...+.+++ .+|..++
T Consensus 167 y~l~g~ga~L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~~~~~-sG~~~~f~e~my~i~~~~~~~yLi~TaE~~l~~~h~ 245 (448)
T PLN02678 167 YYLKGAGVLLNQALINFGLAFLRKRGYTPLQTPFFMRKDVMAK-CAQLAQFDEELYKVTGEGDDKYLIATSEQPLCAYHR 245 (448)
T ss_pred EEECCHHHHHHHHHHHHHHHHHHHcCCEEEECcccccHHHHhh-cCCcccchhcCceecCCCCceeeecccccccChHHh
Confidence 3444 88999999999999999999999999999999998865 6765 3689998654345555553 3454444
Q ss_pred hhhhhccccchhhhhhhhhhcccCCC-----Cc--cccccccccccccccccc--cCCC-hhhHHHHHHHhhhcCCCcce
Q 003041 512 RYVAMNGLTSFKRHQIAKVYRRDNPS-----KG--RYREFYQCDFDIAGQYER--MGPD-FEVVKILTELLNELDIGDYE 581 (854)
Q Consensus 512 R~~a~~~~~p~K~y~ig~VfR~e~p~-----~G--r~REf~Q~d~eiig~~~~--~~aD-aEvI~l~~eil~~Lgl~~~~ 581 (854)
..+.....+|+|++.++++||+|... .| |.|+|++++.-.|+.++. ...+ -|++..+.++|+.||+ +|.
T Consensus 246 ~~~~s~~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f~~~~pe~~~s~~~~e~~l~~~~~i~~~L~l-pyr 324 (448)
T PLN02678 246 GDWIDPKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNESWEMHEEMLKNSEDFYQSLGI-PYQ 324 (448)
T ss_pred cccCCHHhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEEEEECCCchhHHHHHHHHHHHHHHHHHHcCC-CeE
Confidence 33334567899999999999999753 23 889999999988876542 1122 3678999999999999 466
Q ss_pred eee
Q 003041 582 IKL 584 (854)
Q Consensus 582 i~L 584 (854)
+..
T Consensus 325 vv~ 327 (448)
T PLN02678 325 VVS 327 (448)
T ss_pred EEe
Confidence 643
No 79
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=98.70 E-value=8.7e-09 Score=91.30 Aligned_cols=87 Identities=36% Similarity=0.504 Sum_probs=77.3
Q ss_pred hhhhhhhcCC-CccchHHHHHHHhhhccceeeeeh-hhHHHHHhhhhcCCCceEEEeecccccccceeeeccccchhhhc
Q 003041 762 TQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVH-KKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVI 839 (854)
Q Consensus 762 ~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~~-~~l~k~l~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v 839 (854)
++|+|++.++ .+..+++++..||+.|++|+++.. .++++++++|.+.|++|++++|+++..+++++++++.++++..+
T Consensus 2 ~~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~~~~~~~~~~a~~~~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~ 81 (91)
T cd00859 2 VDVYVVPLGEGALSEALELAEQLRDAGIKAEIDYGGRKLKKQFKYADRSGARFAVILGEDELAAGVVTVKDLETGEQETV 81 (91)
T ss_pred CcEEEEEcChHHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHcCCCEEEEEcHHHHhCCcEEEEECCCCCcEEE
Confidence 4678888776 667899999999999999999874 47999999999999999999999888889999999999988889
Q ss_pred chhhhHHHH
Q 003041 840 SRSNFVEEI 848 (854)
Q Consensus 840 ~~~elv~~L 848 (854)
+++++++.+
T Consensus 82 ~~~~~~~~~ 90 (91)
T cd00859 82 ALDELVEEL 90 (91)
T ss_pred eHHHHHHHh
Confidence 998887765
No 80
>PLN02320 seryl-tRNA synthetase
Probab=98.64 E-value=1.6e-08 Score=116.21 Aligned_cols=150 Identities=14% Similarity=0.212 Sum_probs=112.7
Q ss_pred ccchh-hHHhHHHHH-HHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCc---h-hhhhhhhccCCceeeeccccc
Q 003041 435 KGTRD-FAKEQMAVR-EKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDS---K-LIYDLADQGGELCSLRYDLTV 508 (854)
Q Consensus 435 ~G~~D-~lp~~~~~~-~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~---k-~~y~~~D~~G~~l~LRpDlT~ 508 (854)
.|.+. |+|.+.... +.+++.+.+...++||++|.||.|...++|.. +|+.. + .+|++ +++.++|-|..-.
T Consensus 221 sG~~f~~L~g~~a~Le~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~~~-sG~~p~~e~~~~y~i---e~ed~~Li~TaE~ 296 (502)
T PLN02320 221 SGSKFYYLKNEAVLLEMALVNWTLSEVMKKGFTPLTTPEIVRSSVVEK-CGFQPRGDNTQVYSI---DGSDQCLIGTAEI 296 (502)
T ss_pred CCCeeEEeCCHHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHHh-cCCCcccccCceeEE---CCCceEEeecccc
Confidence 48888 478767644 78999999999999999999999999999865 77642 2 45655 3466888655444
Q ss_pred chhhhhh----hccccchhhhhhhhhhcccCCCC-----c--cccccccccccccccccccCCCh-hhHHHHHHHhhhcC
Q 003041 509 PFARYVA----MNGLTSFKRHQIAKVYRRDNPSK-----G--RYREFYQCDFDIAGQYERMGPDF-EVVKILTELLNELD 576 (854)
Q Consensus 509 ~~aR~~a----~~~~~p~K~y~ig~VfR~e~p~~-----G--r~REf~Q~d~eiig~~~~~~aDa-EvI~l~~eil~~Lg 576 (854)
|+.-... ....+|+|++.+++|||+|.... | |.++|.+.+..+|+.++....+. |++..+.++++.||
T Consensus 297 Pl~~~~~~~ils~~dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~if~~peqs~~e~e~ll~~~e~i~~~Lg 376 (502)
T PLN02320 297 PVGGIHMDSILLESALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFVICRPEESESFHEELIQIEEDLFTSLG 376 (502)
T ss_pred cccccccccccCHhhCCceeEEeccccccccccCCCcCCCceeeeeeecccEEEEECHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4332222 34568999999999999997632 3 89999999999999866433343 57899999999999
Q ss_pred CCcceeeechhh
Q 003041 577 IGDYEIKLNHRL 588 (854)
Q Consensus 577 l~~~~i~Lnh~~ 588 (854)
+....+.+...+
T Consensus 377 Lpyrvv~l~tgD 388 (502)
T PLN02320 377 LHFKTLDMATAD 388 (502)
T ss_pred CCeEEEEecCCc
Confidence 965666666554
No 81
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=98.50 E-value=5.1e-08 Score=105.18 Aligned_cols=112 Identities=19% Similarity=0.243 Sum_probs=81.5
Q ss_pred HHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhhh-ccCCceeee--cccccchhhhhhhccccch
Q 003041 446 AVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLAD-QGGELCSLR--YDLTVPFARYVAMNGLTSF 522 (854)
Q Consensus 446 ~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D-~~G~~l~LR--pDlT~~~aR~~a~~~~~p~ 522 (854)
+++..+.+.+++.|.++||.||.||+++... .+... +.|.+.. ..|+.+.|+ |+++ ..|.++.+ .-
T Consensus 2 ~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~-----~~~~~-~~f~~~~~~~g~~~~L~~Spql~--~~~~~~~~---~~ 70 (269)
T cd00669 2 KVRSKIIKAIRDFMDDRGFLEVETPMLQKIT-----GGAGA-RPFLVKYNALGLDYYLRISPQLF--KKRLMVGG---LD 70 (269)
T ss_pred cHHHHHHHHHHHHHHHCCCEEEECCEEeccC-----Ccccc-ceEEeeecCCCCcEEeecCHHHH--HHHHHhcC---CC
Confidence 4678899999999999999999999998532 22222 3565521 258888999 8886 45555442 23
Q ss_pred hhhhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhh
Q 003041 523 KRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLN 573 (854)
Q Consensus 523 K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~ 573 (854)
|+|+||+|||+|.+..+|.+||+|+++|.... + --|++.++.+++.
T Consensus 71 ~vf~i~~~fR~e~~~~~hl~EF~~le~e~~~~-~----~~dvm~~~e~lv~ 116 (269)
T cd00669 71 RVFEINRNFRNEDLRARHQPEFTMMDLEMAFA-D----YEDVIELTERLVR 116 (269)
T ss_pred cEEEEecceeCCCCCCCcccceeEEEEEEecC-C----HHHHHHHHHHHHH
Confidence 99999999999988889999999999997754 2 1255555555544
No 82
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=4.5e-07 Score=99.19 Aligned_cols=351 Identities=19% Similarity=0.194 Sum_probs=209.6
Q ss_pred cccccCCCCCCchHHHHHHHHHHHhhcccCCCCCCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhh
Q 003041 399 DLFSFFDPRDPEFDGLLTKIREIVESNESRRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETL 478 (854)
Q Consensus 399 ~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~ 478 (854)
.+.+|.-+.+-+|..--+.+-.-.++-+ ....+|++-+=|-...+|+.|...+...+++-|-+....|+|-+...+
T Consensus 56 ~~~gl~~~k~~df~~WY~qVitk~emie----YydvsGcyilRP~s~aIWe~Iq~wfd~~ik~lGv~ncYFPmfVs~~~L 131 (551)
T KOG4163|consen 56 TLLGLTAKKEEDFPEWYSQVITKGEMIE----YYDVSGCYILRPWSYAIWEAIQDWFDAEIKKLGVKNCYFPMFVSKSVL 131 (551)
T ss_pred hhcccccccccchHHHHHHHhhhhhhhe----eecccceEEecchHHHHHHHHHHHHHHHHHHhccccceeeeecCHHHH
Confidence 3445555555555544333321112211 356789999999999999999999999999999999999999998877
Q ss_pred hhccCCC---chhhhhhhhccC-----Cceeeeccc----ccchhhhhhhccccchhhhhhhhhhcccC--CC-Cccccc
Q 003041 479 MGKYGED---SKLIYDLADQGG-----ELCSLRYDL----TVPFARYVAMNGLTSFKRHQIAKVYRRDN--PS-KGRYRE 543 (854)
Q Consensus 479 ~~~~g~~---~k~~y~~~D~~G-----~~l~LRpDl----T~~~aR~~a~~~~~p~K~y~ig~VfR~e~--p~-~Gr~RE 543 (854)
...-.+- ..++- ...+.| +.+++||.. -+.++.|+-+++.+|+|+=+-.+|-|.|- |+ .-|.||
T Consensus 132 EkEk~Hve~FaPEvA-wVTr~G~seLeepiaiRPTSETvmyp~yakWi~ShRDLPlkLNQW~nVvRWEfk~p~PFlRtrE 210 (551)
T KOG4163|consen 132 EKEKDHVEGFAPEVA-WVTRAGNSELEEPIAIRPTSETVMYPYYAKWIQSHRDLPLKLNQWCNVVRWEFKHPQPFLRTRE 210 (551)
T ss_pred hhhhhhhccCCcceE-EEEecCCcccccceeeccCccceecHHHHHHHHhhccCchhhhhhhhheeeeccCCCcchhhhH
Confidence 5432221 12222 234444 368999963 45678899899999999999999999983 44 358999
Q ss_pred c-ccccccccccccccCCChhhHHHH---HHHhhhcCCCcceeeechhhhhhhhhhhcCCCccchhhhccchhhhhhhhH
Q 003041 544 F-YQCDFDIAGQYERMGPDFEVVKIL---TELLNELDIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSF 619 (854)
Q Consensus 544 f-~Q~d~eiig~~~~~~aDaEvI~l~---~eil~~Lgl~~~~i~Lnh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~ 619 (854)
| ||-|--.|-... .+|-|++.++ .+++..+ +-+|.-+- .|..-
T Consensus 211 FLWQEGHTAfat~~--eA~eEvlqiLdlYa~vy~el---------------------lAiPVvkG----------rKse~ 257 (551)
T KOG4163|consen 211 FLWQEGHTAFATPE--EAEEEVLQILDLYARVYEEL---------------------LAIPVVKG----------RKSEK 257 (551)
T ss_pred HHHhcCcchhCCHh--HHHHHHHHHHHHHHHHHHhh---------------------hccccccC----------ccchh
Confidence 9 787765555432 3566765543 3333322 11111000 00001
Q ss_pred HHHHHHHHHhcCcceeecccccccccccCChHHHHHHHhhhcchhhcccccccccchHHHHHHHhhhccccceeeeeccc
Q 003041 620 EQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSL 699 (854)
Q Consensus 620 ~~i~~~L~~~~gl~~~~~~~L~~l~~~~g~~~~vl~~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~gv~~~I~~D~sl 699 (854)
+++ .|=+.+ ..+..|+--+|.- + +. ..-++|.+-+ |-
T Consensus 258 EkF-------aGgd~T--ttvEa~i~~~Grg------i--------Qg----aTSH~LGQNF----------------Sk 294 (551)
T KOG4163|consen 258 EKF-------AGGDYT--TTVEAFIPCSGRG------I--------QG----ATSHHLGQNF----------------SK 294 (551)
T ss_pred hhc-------cCCcce--EEEeeeecccccc------c--------cc----cchhhhhHHH----------------HH
Confidence 110 011110 0112222111110 0 00 0112222211 11
Q ss_pred cccCcccccccccccCCcccccc---cccC-----CcccCccceehhhHHHHHHHHHHHHhhhhcccc--chhhhhhhhc
Q 003041 700 ARGLDYYTGVGSIAAGGRYDNLI---GMFG-----TKQVPAVGVSLGIERVFTIMEQIQKERNQIIRA--TETQVLVGLL 769 (854)
Q Consensus 700 ~rgl~YYtG~~~Ia~GGRYD~Li---~~fg-----~~~~pAvGfsigieRL~~~L~~~~~~~~~~~~~--~~~dVlV~~~ 769 (854)
..+..| ++.. ..|- +-..-.+|..+- -++.+.+...|| +++||+|+++
T Consensus 295 mF~i~~-------------ed~~~g~~~fv~QnSWg~sTRtiGvmiM---------~HgDdkGLvLPPrVA~vQvVvvP~ 352 (551)
T KOG4163|consen 295 MFEIVF-------------EDPGEGEKEFVWQNSWGLSTRTIGVMIM---------THGDDKGLVLPPRVAPVQVVVVPV 352 (551)
T ss_pred hhceee-------------cCCCccchhheeecccccccceeeEEEE---------EecCCcccccCCcccceEEEEEec
Confidence 111122 2210 0110 001112332211 122222222233 5789999988
Q ss_pred CC-----------CccchHHHHHHHhhhccceeeeeh--hhHHHHHhhhhcCCCceEEEeecccccccceeeeccccchh
Q 003041 770 GD-----------KLPLAAELVSELWNAKVKAEYMVH--KKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQE 836 (854)
Q Consensus 770 ~~-----------~~~~a~~la~~Lr~~GI~ael~~~--~~l~k~l~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e 836 (854)
+- .+..+-.+...|-..||||+.++. -+++=+|.+....|+|..+-||+++++++.|.+-.+++++.
T Consensus 353 git~~~s~~~~~~l~~a~~~v~~~L~~~giR~~~D~rDnytpGwKfnhwElkGVPlRiEiGPrD~~~~qv~~VrRd~~~K 432 (551)
T KOG4163|consen 353 GITDATSEEDKQELLDACSAVESRLLGAGIRAEADLRDNYTPGWKFNHWELKGVPLRIEIGPRDLASNQVVAVRRDTGEK 432 (551)
T ss_pred cccccCchHHHHHHHHHHHHHHHHHhccCceEeecccccCCCCccccceeecCceeEEEeccchhhhCeEEEEEccCCcc
Confidence 73 134566788999999999999983 35888999999999999999999999999999988999999
Q ss_pred hhcchhhhHHHHHHhh
Q 003041 837 EVISRSNFVEEIQRRL 852 (854)
Q Consensus 837 ~~v~~~elv~~L~~~l 852 (854)
.+|++++|+..++++|
T Consensus 433 ~~v~~~~l~~~v~elL 448 (551)
T KOG4163|consen 433 KDVSLGDLEKTVKELL 448 (551)
T ss_pred cccCHHHHHHHHHHHH
Confidence 9999999999988776
No 83
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=98.41 E-value=1.6e-07 Score=107.24 Aligned_cols=168 Identities=13% Similarity=0.090 Sum_probs=124.4
Q ss_pred CchHHHHHHHHHHHhhcccCCCCCCCccchhhHHhHHHHHHHhHHHHH-HHHHhcCccccCcchhHhHHhhhhccCCC--
Q 003041 409 PEFDGLLTKIREIVESNESRRLPKLPKGTRDFAKEQMAVREKAFSIIT-EVFKRHGAMALDTPVFEMRETLMGKYGED-- 485 (854)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~p~G~~D~lp~~~~~~~~i~~~l~-~if~~~G~~eI~tP~le~~e~~~~~~g~~-- 485 (854)
-.|.++..++. .. -.-+.+|+.-|.|.++.+++.+.+.+. ..++++||+++.+|.|-+.+.+.+ .|+.
T Consensus 195 ~~h~el~~k~g-li-------dk~~G~G~~vl~p~ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k-~ghl~g 265 (520)
T TIGR00415 195 GDPTDEAEKLG-WV-------KKFPGRGQWFYGPKITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNK-MRYLEG 265 (520)
T ss_pred CCHHHHHHHCC-Ce-------eEEcccCEEEEeCHHHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHcc-cCCCCC
Confidence 45666666542 11 124568999999999999999999995 678899999999999999998865 4543
Q ss_pred -chhhhhhhhc-----------------------------cCCceeeecccccchhhhhhh----ccccchhhhh-hhhh
Q 003041 486 -SKLIYDLADQ-----------------------------GGELCSLRYDLTVPFARYVAM----NGLTSFKRHQ-IAKV 530 (854)
Q Consensus 486 -~k~~y~~~D~-----------------------------~G~~l~LRpDlT~~~aR~~a~----~~~~p~K~y~-ig~V 530 (854)
..+||.+... ....++|+|..+.|+.-+++. ...+|+|+|+ .++|
T Consensus 266 F~~e~y~Vt~~~~d~d~~~~f~~~~~~~~eipi~~L~~~le~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~C 345 (520)
T TIGR00415 266 LPEGMYYCCAPKRDPELFEEFKNELIIKKEIPIDKLKNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWT 345 (520)
T ss_pred CchhheEEecCCCCcchhhccccccccccccccccccccccCCceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCe
Confidence 3668866211 123689999999999766653 3467999998 5689
Q ss_pred hcccCC-CC--ccccccccccccccccccccCCC-hhhHHHHHHHhhhcCCCcceeeech
Q 003041 531 YRRDNP-SK--GRYREFYQCDFDIAGQYERMGPD-FEVVKILTELLNELDIGDYEIKLNH 586 (854)
Q Consensus 531 fR~e~p-~~--Gr~REf~Q~d~eiig~~~~~~aD-aEvI~l~~eil~~Lgl~~~~i~Lnh 586 (854)
||+|.. .. -|.+||.+..+..+++++..... -+.+..+.++++.|++ +|.+..++
T Consensus 346 FR~EaGstrGL~RvhEF~kvE~v~~~tpEea~e~~e~mle~~~~~l~~L~L-pyrv~~ad 404 (520)
T TIGR00415 346 YRWEAGGAKGLDRVHEFLRVECVWIAEPEETEEIRDKTLELAEDAADELDL-EWWTEVGD 404 (520)
T ss_pred EeCCCCCCCCCceeeEEEEEEEEEEeCHHHHHHHHHHHHHHHHHHHHHcCC-CeEEeecC
Confidence 999963 23 48999999999999986532222 2467888999999998 57776554
No 84
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=98.13 E-value=1.8e-06 Score=91.95 Aligned_cols=128 Identities=22% Similarity=0.222 Sum_probs=95.8
Q ss_pred HHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccC--CC-----chhhhhhhhcc---CCceeeecccccchhhhhhhc
Q 003041 448 REKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYG--ED-----SKLIYDLADQG---GELCSLRYDLTVPFARYVAMN 517 (854)
Q Consensus 448 ~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g--~~-----~k~~y~~~D~~---G~~l~LRpDlT~~~aR~~a~~ 517 (854)
.+.+.+.++++|...||+++..|.++.........+ .+ ....|.+.++. .+..+||.-+|+..+|++..+
T Consensus 19 ~~~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~~~~~~~~vLRThts~~~~~~l~~~ 98 (247)
T PF01409_consen 19 ITKFIREIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNPYSAEEDYSVLRTHTSPGQLRTLNKH 98 (247)
T ss_dssp HHHHHHHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSSBCECSSEEE-SSTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeeccccccchhhhhhhhhhHHHHHHHHHh
Confidence 366777899999999999999999965432212222 11 23345554554 478899999999999999666
Q ss_pred cccchhhhhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhhhc-CCC
Q 003041 518 GLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNEL-DIG 578 (854)
Q Consensus 518 ~~~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~L-gl~ 578 (854)
...|.|+|++|+|||+|.....+..+|+|.++=+++..- .=.++..++.++++.| |.+
T Consensus 99 ~~~p~kif~iG~VyR~D~~D~th~~~f~Qleg~~~~~~~---~f~~Lk~~l~~l~~~lfG~~ 157 (247)
T PF01409_consen 99 RPPPIKIFEIGKVYRRDEIDATHLPEFHQLEGLVVDKNV---TFEDLKGTLEELLKELFGID 157 (247)
T ss_dssp SHSSEEEEEEEEEESSSCSBSSBESEEEEEEEEEEETTE----HHHHHHHHHHHHHHHHTTT
T ss_pred cCCCeEEEecCceEecCCcccccCccceeEeeEEEeccc---chhHHHHHHHHHHHHHhhcc
Confidence 778999999999999998777788899999998777521 1246777888889988 875
No 85
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=98.01 E-value=5.8e-06 Score=86.73 Aligned_cols=121 Identities=20% Similarity=0.176 Sum_probs=89.2
Q ss_pred HHhHHHHHHHHHhcCccccCcchhHhHH-hhhhccCCCch-------hhhhhhhccCCceeeecccccchhhhhhhcccc
Q 003041 449 EKAFSIITEVFKRHGAMALDTPVFEMRE-TLMGKYGEDSK-------LIYDLADQGGELCSLRYDLTVPFARYVAMNGLT 520 (854)
Q Consensus 449 ~~i~~~l~~if~~~G~~eI~tP~le~~e-~~~~~~g~~~k-------~~y~~~D~~G~~l~LRpDlT~~~aR~~a~~~~~ 520 (854)
+++++.+++++..+||.|+.|+.|...+ .+. ..+.... ..+++.++- .-+||+.+++++.+.++.| ..
T Consensus 4 ~~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~~-~~~~~~~~~~~~~~~~v~l~NP~--~~~LR~sLlp~LL~~l~~N-~~ 79 (218)
T cd00496 4 NKVIEEIEDIFVSMGFTEVEGPEVETDFYNFD-ALNIPQDHPARDMQDTFYINDPA--RLLLRTHTSAVQARALAKL-KP 79 (218)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCcccccchhhh-hcCCCCCCcccccCceEEECCCc--eEEEeccCcHHHHHHHHhc-CC
Confidence 5667779999999999999999997662 222 1221110 123444433 5689999999999999998 77
Q ss_pred chhhhhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhhhcC
Q 003041 521 SFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELD 576 (854)
Q Consensus 521 p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~Lg 576 (854)
+.|+|++|+|||.++....+..||.+.++.+.|.. ....|+..++..+++.+|
T Consensus 80 ~~~lFEiG~Vf~~~~~~~~~~~E~~~l~~~~~g~~---~df~dlkg~ve~ll~~l~ 132 (218)
T cd00496 80 PIRIFSIGRVYRNDEIDATHLPEFHQIEGLVVDKG---LTFADLKGTLEEFAKELF 132 (218)
T ss_pred CeeEEEEcCeEECCCCCCCcCCccEEEEEEEECCC---CCHHHHHHHHHHHHHHhc
Confidence 99999999999987543344459999999988842 124577788888888888
No 86
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=97.96 E-value=4.7e-06 Score=90.61 Aligned_cols=113 Identities=17% Similarity=0.300 Sum_probs=70.6
Q ss_pred HHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhh--hccCCceeeecccccchhhhhhhccccchh
Q 003041 446 AVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLA--DQGGELCSLRYDLTVPFARYVAMNGLTSFK 523 (854)
Q Consensus 446 ~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~--D~~G~~l~LRpDlT~~~aR~~a~~~~~p~K 523 (854)
++|.++...+++.|.++||.||.||++..... .|. .. |... +..|..+.|+-.--...=|.++. .--|
T Consensus 2 ~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~----~g~--~~-f~~~~~~~~~~~~~L~~Spql~lk~ll~~---g~~~ 71 (280)
T cd00777 2 RLRSRVIKAIRNFLDEQGFVEIETPILTKSTP----EGA--RD-FLVPSRLHPGKFYALPQSPQLFKQLLMVS---GFDR 71 (280)
T ss_pred chHHHHHHHHHHHHHHCCCEEEeCCeeecCCC----CCC--CC-ceeccccCCCceeecccCHHHHHHHHHhc---CcCc
Confidence 46788899999999999999999999864321 111 11 2211 11233333332111111112211 1359
Q ss_pred hhhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhh
Q 003041 524 RHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLN 573 (854)
Q Consensus 524 ~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~ 573 (854)
+|++|++||+|+++.+|..||+|+++|.... + --+++.++.+++.
T Consensus 72 v~~i~~~fR~e~~~~~r~~Ef~~~e~e~~~~-~----~~dlm~~~e~li~ 116 (280)
T cd00777 72 YFQIARCFRDEDLRADRQPEFTQIDIEMSFV-D----QEDIMSLIEGLLK 116 (280)
T ss_pred EEEeccceeCCCCCCCccceeEEeEeeeccC-C----HHHHHHHHHHHHH
Confidence 9999999999999999999999999998865 2 1255555555544
No 87
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=97.94 E-value=8.2e-06 Score=90.59 Aligned_cols=119 Identities=16% Similarity=0.256 Sum_probs=78.9
Q ss_pred HHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhhhccCCceeeecccccchhhhhhhcccc
Q 003041 441 AKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGLT 520 (854)
Q Consensus 441 lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D~~G~~l~LRpDlT~~~aR~~a~~~~~ 520 (854)
.-.-..++.++.+.+++.|.++||.+|.||+++... ++...+.|.+ +--|+.+-|+.-.-...=+.++ .
T Consensus 20 ~~~~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~------~e~~~~~f~~-~~~~~~~yL~~Spql~lk~l~~--~-- 88 (322)
T cd00776 20 VQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTD------TEGGAELFKV-SYFGKPAYLAQSPQLYKEMLIA--A-- 88 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEeeCCceecCC------CCccCCcccc-ccCCCcceecCCHHHHHHHHHH--h--
Confidence 344568889999999999999999999999998632 1111223443 2344555555333222223332 1
Q ss_pred chhhhhhhhhhcccCCCC-ccccccccccccccccccccCCChhhHHHHHHHhhh
Q 003041 521 SFKRHQIAKVYRRDNPSK-GRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNE 574 (854)
Q Consensus 521 p~K~y~ig~VfR~e~p~~-Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~ 574 (854)
.-|+|+||+|||.|.... -|.-||+|+++|..+..+ -.+++.++.++++.
T Consensus 89 ~~~vf~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~~~----~~dlm~~~e~ll~~ 139 (322)
T cd00776 89 LERVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIED----YNEVMDLIEELIKY 139 (322)
T ss_pred hhhhEEeccccccCCCCcCCCcceeeccceeeeccCC----HHHHHHHHHHHHHH
Confidence 468999999999998654 467999999999887522 13566655555543
No 88
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=2.8e-05 Score=81.87 Aligned_cols=100 Identities=20% Similarity=0.302 Sum_probs=65.7
Q ss_pred HHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhh----hhhhcc---CCceeeecccccchhhhhhhc
Q 003041 445 MAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIY----DLADQG---GELCSLRYDLTVPFARYVAMN 517 (854)
Q Consensus 445 ~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y----~~~D~~---G~~l~LRpDlT~~~aR~~a~~ 517 (854)
...|..+...||..|..+||.||+||.+.-.-. .+ ..+. .++.++ +..+-|.+.=-.++-|.++..
T Consensus 16 ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~v------td-~hL~~F~Te~~~~~~~~~~~l~L~TSPEy~mKrLLAag 88 (322)
T COG2269 16 LLKRAAIIAAIRRFFAERGVLEVETPALSVAPV------TD-IHLHPFETEFLGPGGAKGKPLWLHTSPEYHMKRLLAAG 88 (322)
T ss_pred HHHHHHHHHHHHHHHHHcCceEecchHhhcCCC------Cc-cceeeeeeEEeccCccccceeeeecCcHHHHHHHHHcc
Confidence 567888999999999999999999999864321 11 1111 122333 334444443333455666543
Q ss_pred cccchhhhhhhhhhcccCCCCcccccccccccccccc
Q 003041 518 GLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQ 554 (854)
Q Consensus 518 ~~~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~ 554 (854)
.-+.|++|+|||++.-+.-+.=||+|...+-+|.
T Consensus 89 ---~~~ifql~kvfRN~E~G~~H~PEFTMLEWYrv~~ 122 (322)
T COG2269 89 ---SGPIFQLGKVFRNEEMGRLHNPEFTMLEWYRVGC 122 (322)
T ss_pred ---CCcchhhhHHHhcccccccCCCceeEeeeeccCC
Confidence 3478999999999875444556999988777765
No 89
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=97.83 E-value=1.7e-05 Score=86.89 Aligned_cols=123 Identities=16% Similarity=0.139 Sum_probs=89.3
Q ss_pred HHHhHHHHHHHHHhcCccccCcchhHhH-HhhhhccC--C-----CchhhhhhhhccCCceeeecccccchhhhhhhccc
Q 003041 448 REKAFSIITEVFKRHGAMALDTPVFEMR-ETLMGKYG--E-----DSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGL 519 (854)
Q Consensus 448 ~~~i~~~l~~if~~~G~~eI~tP~le~~-e~~~~~~g--~-----~~k~~y~~~D~~G~~l~LRpDlT~~~aR~~a~~~~ 519 (854)
.+.+.+.++++|...||.|+.+|.|+.. ..+.. .+ . +....+.+. +..+||+.+++...|.+..|..
T Consensus 74 ~~~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~-l~~~~~hpar~~~d~~~l~----d~~vLRtsl~p~ll~~l~~N~~ 148 (294)
T TIGR00468 74 LTRVIDEIRDIFLGLGFTEEKGPEVETDFWNFDA-LNIPQDHPARDMQDTFYIK----DRLLLRTHTTAVQLRTMEENEK 148 (294)
T ss_pred HHHHHHHHHHHHHHCCCEEeeCCceeccHHHHHH-hCCCCCCcchhhccceeec----CCcceecccHHHHHHHHHhcCC
Confidence 4566777999999999999999999865 22221 21 1 011234443 4568999999999999998755
Q ss_pred cchhhhhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhhhcCCC
Q 003041 520 TSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIG 578 (854)
Q Consensus 520 ~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~Lgl~ 578 (854)
.|+|+|++|+|||++.....+..||+|+++-+++.. ..-.++..++..+++.++++
T Consensus 149 ~pirlFEiGrVfr~d~~d~~~~pef~ql~gl~~~~~---~~f~dLKg~le~ll~~l~~~ 204 (294)
T TIGR00468 149 PPIRIFSPGRVFRNDTVDATHLPEFHQVEGLVIDKN---VSFTNLKGFLEEFLKKMFGE 204 (294)
T ss_pred CCceEEEecceEEcCCCCCccCChhhEEEEEEECCC---CCHHHHHHHHHHHHHHhCCC
Confidence 889999999999987644344459999988877631 12357777888888888864
No 90
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=97.78 E-value=2.8e-05 Score=85.59 Aligned_cols=128 Identities=15% Similarity=0.150 Sum_probs=95.0
Q ss_pred HHHHhHHHHHHHHHhcCccccCcchhHhHHh-hhhccC----C---CchhhhhhhhccCCceeeecccccchhhhhhhcc
Q 003041 447 VREKAFSIITEVFKRHGAMALDTPVFEMRET-LMGKYG----E---DSKLIYDLADQGGELCSLRYDLTVPFARYVAMNG 518 (854)
Q Consensus 447 ~~~~i~~~l~~if~~~G~~eI~tP~le~~e~-~~~~~g----~---~~k~~y~~~D~~G~~l~LRpDlT~~~aR~~a~~~ 518 (854)
-...+.+.|+++|...||+++.+|.++.... |.. .+ + +....|.+ .+..+||.-.++..+|.+.. .
T Consensus 109 Pl~~~~~~Ir~if~~mGF~ev~gpeIes~~~NFda-Ln~P~dHPaR~~~DTfyI----~~~~lLRThTSp~qir~L~~-~ 182 (339)
T PRK00488 109 PITQTIEEIEDIFVGMGFEVAEGPEIETDYYNFEA-LNIPKDHPARDMQDTFYI----DDGLLLRTHTSPVQIRTMEK-Q 182 (339)
T ss_pred HHHHHHHHHHHHHHhCCCEEEeCCccccHHHHHHH-hCCCCCCcccccCceEEE----cCCceeeccCcHHHHHHHHh-c
Confidence 3467788899999999999999999986432 211 11 1 11234445 24578999999999999876 5
Q ss_pred ccchhhhhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhhhc-CCCcceeee
Q 003041 519 LTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNEL-DIGDYEIKL 584 (854)
Q Consensus 519 ~~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~L-gl~~~~i~L 584 (854)
..|+|++++|+|||++....-|..+|+|.+.=+++.. ..-+++..++..+++.+ | ++..+++
T Consensus 183 ~~Pirif~~G~VyR~D~~DatH~~~FhQleglvvd~~---vtf~dLK~~L~~fl~~~fg-~~~~~R~ 245 (339)
T PRK00488 183 KPPIRIIAPGRVYRNDSDDATHSPMFHQVEGLVVDKN---ISFADLKGTLEDFLKAFFG-EDVKIRF 245 (339)
T ss_pred CCCeEEEEeeeEEEcCCCCcccCcceeeEEEEEEeCC---CCHHHHHHHHHHHHHHHcC-CCCeEEe
Confidence 6799999999999998767778999999998888863 23467788888888886 5 3344443
No 91
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=5.7e-05 Score=85.37 Aligned_cols=145 Identities=17% Similarity=0.259 Sum_probs=111.3
Q ss_pred CccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC---chhhhhhhhccCCceeeecccccch
Q 003041 434 PKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDLTVPF 510 (854)
Q Consensus 434 p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~~G~~l~LRpDlT~~~ 510 (854)
..+++.+.+..+.+.+.+.+...+...+|||.++.+|.+-..++..+ .|.. .+.+|++.|. .+.|=|....|+
T Consensus 163 Gsrf~~~~~~~a~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e~m~g-tgqlpkf~e~~y~v~~~---~~~LipTaEvpl 238 (429)
T COG0172 163 GSRFYFYKGKGARLERALIQFMLDLHTKHGFTEVLPPYLVNLESMFG-TGQLPKFEEDLYKVEDP---DLYLIPTAEVPL 238 (429)
T ss_pred CCceEEEcCHHHHHHHHHHHHHHHHHHHcCceEeeCceeecHHHhhc-cCCCCCCcccceEecCC---CEEEEecchhhh
Confidence 45566667888999999999999999999999999999999997643 5654 3578988654 789999999999
Q ss_pred hhhhhhc----cccchhhhhhhhhhcccCCCC-----c--cccccccccccccccccccCCCh-hhHHHHHHHhhhcCCC
Q 003041 511 ARYVAMN----GLTSFKRHQIAKVYRRDNPSK-----G--RYREFYQCDFDIAGQYERMGPDF-EVVKILTELLNELDIG 578 (854)
Q Consensus 511 aR~~a~~----~~~p~K~y~ig~VfR~e~p~~-----G--r~REf~Q~d~eiig~~~~~~aDa-EvI~l~~eil~~Lgl~ 578 (854)
+-+++.. ..+|+|++-+.+|||.|.... | |.-||..+..-.|+.++....+- |++..+-++++.|++.
T Consensus 239 ~~l~~~Eil~~~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v~~~~Pe~S~~~~E~m~~~ae~il~~LeLP 318 (429)
T COG0172 239 TNLHRDEILDEEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVVITKPEESEEELEEMLGNAEEVLQELELP 318 (429)
T ss_pred HHhhcccccccccCCeeeEEEChhhhcccccccccccceeeeeeeeeEEEEEEeCcchhHHHHHHHHHHHHHHHHHhCCC
Confidence 9888753 457999999999999996542 3 55677776666666654322222 5788999999999995
Q ss_pred cceee
Q 003041 579 DYEIK 583 (854)
Q Consensus 579 ~~~i~ 583 (854)
|.+.
T Consensus 319 -yRvv 322 (429)
T COG0172 319 -YRVV 322 (429)
T ss_pred -ceEe
Confidence 5443
No 92
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=97.59 E-value=3.6e-05 Score=84.77 Aligned_cols=115 Identities=18% Similarity=0.279 Sum_probs=71.4
Q ss_pred HHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhh--h--ccCCceeeecccccchhhhhhhccccc
Q 003041 446 AVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLA--D--QGGELCSLRYDLTVPFARYVAMNGLTS 521 (854)
Q Consensus 446 ~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~--D--~~G~~l~LRpDlT~~~aR~~a~~~~~p 521 (854)
.+|.++.+.+++.|.++||.||.||+|+.... ++...+.|++. + ..++...|+-.--...=|.++.. -
T Consensus 2 ~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~-----~e~~~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~g---~ 73 (304)
T TIGR00462 2 RARARLLAAIRAFFAERGVLEVETPLLSPAPV-----TDPHLDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAAG---S 73 (304)
T ss_pred hHHHHHHHHHHHHHHHCCCEEEECCeEecCCC-----CCcCCcceeeeccCCCCCCcceeeecCHHHHHHHHHhcc---C
Confidence 56889999999999999999999999986421 11111233321 1 11223333322211222333321 3
Q ss_pred hhhhhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhh
Q 003041 522 FKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLN 573 (854)
Q Consensus 522 ~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~ 573 (854)
-|+|+||++||.|....-|.-||+|++++..+. + --+++.++.+++.
T Consensus 74 ~rVfeigp~FRaE~~~~rHl~EFtmLE~e~~~~-d----~~d~m~~~e~li~ 120 (304)
T TIGR00462 74 GPIFQICKVFRNGERGRRHNPEFTMLEWYRPGF-D----YHDLMDEVEALLQ 120 (304)
T ss_pred CCEEEEcCceeCCCCCCCcccHHHhHHHHHHcC-C----HHHHHHHHHHHHH
Confidence 699999999999987555778999999987664 1 1355555555554
No 93
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=97.44 E-value=0.00018 Score=79.01 Aligned_cols=129 Identities=19% Similarity=0.162 Sum_probs=96.5
Q ss_pred HHHHHHHhHHHHHHHHHhcCccccCcchhHhHH-----hhhhcc--CCCchhhhhhhhccCCceeeecccccchhhhhhh
Q 003041 444 QMAVREKAFSIITEVFKRHGAMALDTPVFEMRE-----TLMGKY--GEDSKLIYDLADQGGELCSLRYDLTVPFARYVAM 516 (854)
Q Consensus 444 ~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e-----~~~~~~--g~~~k~~y~~~D~~G~~l~LRpDlT~~~aR~~a~ 516 (854)
..-....+.+.++++|...||.++..|.+|..- ++.++. ..+-...|-+.+ +.+.+.||-..|+--+|++..
T Consensus 109 ~~Hpl~~~~e~i~~iF~~mGF~~~~gp~IE~d~~NFDaLn~P~dHPARdmqDTFy~~~-~~~~~lLRTHTs~vq~R~l~~ 187 (335)
T COG0016 109 SLHPLTQTIEEIEDIFLGMGFTEVEGPEIETDFYNFDALNIPQDHPARDMQDTFYLKD-DREKLLLRTHTSPVQARTLAE 187 (335)
T ss_pred CcChHHHHHHHHHHHHHHcCceeccCCcccccccchhhhcCCCCCCcccccceEEEcC-CCCceeecccCcHhhHHHHHh
Confidence 344456777889999999999999999887532 111111 111123455543 222678999999999999998
Q ss_pred ccccchhhhhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhhhcC
Q 003041 517 NGLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELD 576 (854)
Q Consensus 517 ~~~~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~Lg 576 (854)
+...|+|.+.+|+|||+|....-|.-+|+|++.=+++.. ..=+.+.-++.++++.++
T Consensus 188 ~~~~P~k~~~~grvyR~D~~DaTHs~~FhQiEGlvvd~~---~s~~~Lkg~L~~f~~~~f 244 (335)
T COG0016 188 NAKIPIKIFSPGRVYRNDTVDATHSPEFHQIEGLVVDKN---ISFADLKGTLEEFAKKFF 244 (335)
T ss_pred CCCCCceEecccceecCCCCCcccchheeeeEEEEEeCC---ccHHHHHHHHHHHHHHhc
Confidence 877799999999999999777778889999998777652 123678889999999986
No 94
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=97.42 E-value=0.00018 Score=82.57 Aligned_cols=132 Identities=16% Similarity=0.176 Sum_probs=94.4
Q ss_pred HHhHHHHHHHHHhcCcccc-CcchhHhHH-----hhhhc--cCCCchhhhhhhh-------------------ccC----
Q 003041 449 EKAFSIITEVFKRHGAMAL-DTPVFEMRE-----TLMGK--YGEDSKLIYDLAD-------------------QGG---- 497 (854)
Q Consensus 449 ~~i~~~l~~if~~~G~~eI-~tP~le~~e-----~~~~~--~g~~~k~~y~~~D-------------------~~G---- 497 (854)
..+.+.++++|..-||.++ ..|.+|..- ++.+. -..+....|-+.+ ..|
T Consensus 224 ~~~~~ei~~if~~mGF~e~~~g~~ves~f~NFDaL~~PqdHPARd~qDTFyl~~~~~~~~~p~~~~erVk~~He~G~~gS 303 (492)
T PLN02853 224 LKVRQQFRKIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLKAPATTRQLPEDYVERVKTVHESGGYGS 303 (492)
T ss_pred HHHHHHHHHHHHhCCCEEecCCCCeechhhhhhhhcCCCCCCCCCccceEEEcCccccccCcHHHHHHHHHHHhcCCCCc
Confidence 5666778999999999999 467776532 22221 1111122333321 111
Q ss_pred ------------Cceeeecccccchhhhhhhcc---ccchhhhhhhhhhcccCCCCccccccccccccccccccccCCCh
Q 003041 498 ------------ELCSLRYDLTVPFARYVAMNG---LTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDF 562 (854)
Q Consensus 498 ------------~~l~LRpDlT~~~aR~~a~~~---~~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDa 562 (854)
+.++||.-.|+--+|++.... ..|.|+|++|+|||+|....-|.-||+|++.=+++.. ..-.
T Consensus 304 ~Gw~y~W~~~~a~~~vLRTHTTa~s~r~L~~~~~~~~~p~k~fsigrVfR~d~iDatH~~eFhQ~EG~vvd~~---~t~~ 380 (492)
T PLN02853 304 IGYGYDWKREEANKNLLRTHTTAVSSRMLYKLAQKGFKPKRYFSIDRVFRNEAVDRTHLAEFHQVEGLVCDRG---LTLG 380 (492)
T ss_pred cccccccccchhcccccCCCCCHHHHHHHHHhhccCCCCcEEEeccceecCCCCCcccCccceeEEEEEEeCC---CCHH
Confidence 568999999999999998532 3689999999999999888889999999998888752 2346
Q ss_pred hhHHHHHHHhhhcCCCcceee
Q 003041 563 EVVKILTELLNELDIGDYEIK 583 (854)
Q Consensus 563 EvI~l~~eil~~Lgl~~~~i~ 583 (854)
.++.++.++++.+|..++.++
T Consensus 381 ~L~g~l~~f~~~lg~~~~Rfr 401 (492)
T PLN02853 381 DLIGVLEDFFSRLGMTKLRFK 401 (492)
T ss_pred HHHHHHHHHHHHcCCceEEEe
Confidence 788999999999886555554
No 95
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=97.42 E-value=0.00011 Score=86.97 Aligned_cols=103 Identities=18% Similarity=0.300 Sum_probs=67.0
Q ss_pred HhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhh--hccCCceeeecccccchhhhhhhccc
Q 003041 442 KEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLA--DQGGELCSLRYDLTVPFARYVAMNGL 519 (854)
Q Consensus 442 p~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~--D~~G~~l~LRpDlT~~~aR~~a~~~~ 519 (854)
-.-.++|.++...+++.|...||.||+||+|.... .+.... |.+- ...|..+.|+----...=+.++.
T Consensus 135 ~~~lr~Rs~i~~~iR~ff~~~gFiEVeTP~L~~s~------~eGar~-f~vp~~~~~~~~y~L~qSpQlykq~l~v~--- 204 (583)
T TIGR00459 135 QQRLKLRHKVTKAVRNFLDQQGFLEIETPMLTKST------PEGARD-YLVPSRVHKGEFYALPQSPQLFKQLLMVS--- 204 (583)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEECCeeccCC------CCCCcc-eeeeeecCCCceeecCCCHHHHHHHHHhc---
Confidence 34568888999999999999999999999987422 111111 2111 11344444442111111111111
Q ss_pred cchhhhhhhhhhcccCCCCcccccccccccccccc
Q 003041 520 TSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQ 554 (854)
Q Consensus 520 ~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~ 554 (854)
---|+|+||++||+|..+..|.-||+|+|+|....
T Consensus 205 G~ervfqI~~~FR~E~~~t~r~pEFT~le~E~af~ 239 (583)
T TIGR00459 205 GVDRYYQIARCFRDEDLRADRQPEFTQIDMEMSFM 239 (583)
T ss_pred ccCcEEEEcceeeCCCCCCCCCcccCcceeeecCC
Confidence 13599999999999988888889999999997764
No 96
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=97.41 E-value=0.00026 Score=80.62 Aligned_cols=99 Identities=17% Similarity=0.193 Sum_probs=66.7
Q ss_pred HHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhhhc---cCCceeeecccccchhhhhhhcccc
Q 003041 444 QMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQ---GGELCSLRYDLTVPFARYVAMNGLT 520 (854)
Q Consensus 444 ~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D~---~G~~l~LRpDlT~~~aR~~a~~~~~ 520 (854)
....|-+|.+.||+.+...||.||+||++.+- +|....+ .|... -.-.+.||=-....+-|.+.-.
T Consensus 179 ~f~~Rs~ii~~iR~fl~~~gFlEVETP~lq~i------~GGA~Ar--PF~ThhNald~dlyLRIApELyLKRliVGG--- 247 (502)
T COG1190 179 TFIKRSKIIRAIREFLDDRGFLEVETPMLQPI------PGGAAAR--PFITHHNALDMDLYLRIAPELYLKRLIVGG--- 247 (502)
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEecccccccc------CCCcccc--cceeeecccCCceEEeeccHHHHHHHHhcC---
Confidence 35677788899999999999999999998652 2322111 12222 1223556655555555655521
Q ss_pred chhhhhhhhhhcccCCCCccccccccccccccc
Q 003041 521 SFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAG 553 (854)
Q Consensus 521 p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig 553 (854)
--|.|+||++||+|.-..-|.=||+++.++..-
T Consensus 248 ~erVfEIgr~FRNEGid~tHNPEFTmlE~Y~AY 280 (502)
T COG1190 248 FERVFEIGRNFRNEGIDTTHNPEFTMLEFYQAY 280 (502)
T ss_pred chhheeeccccccCCCccccCcchhhHHHHHHH
Confidence 259999999999997666666689988876543
No 97
>PRK06462 asparagine synthetase A; Reviewed
Probab=97.28 E-value=0.0002 Score=79.97 Aligned_cols=121 Identities=20% Similarity=0.275 Sum_probs=77.1
Q ss_pred HhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHh-hhhccCCC-chhhhhhhhccCCceeeecccccchhhhhhhccc
Q 003041 442 KEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRET-LMGKYGED-SKLIYDLADQGGELCSLRYDLTVPFARYVAMNGL 519 (854)
Q Consensus 442 p~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~-~~~~~g~~-~k~~y~~~D~~G~~l~LRpDlT~~~aR~~a~~~~ 519 (854)
-.-.+++..+...+++.|.++||.||.||++..... ... .|.+ .-..+.+ |-.|+.+-|+...-.. -|.++..
T Consensus 27 ~~il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~-~g~~~~~~~~~~-~~~~~~~yL~~Spql~-k~ll~~g-- 101 (335)
T PRK06462 27 RKVLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLMG-LGSDLPVKQISI-DFYGVEYYLADSMILH-KQLALRM-- 101 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCC-ccccCCcccccc-ccCCCceeeccCHHHH-HHHHHhh--
Confidence 345678888999999999999999999999875421 000 1111 0011222 2235556665543222 4444422
Q ss_pred cchhhhhhhhhhcccCCCC---ccccccccccccccccccccCCChhhHHHHHHHhh
Q 003041 520 TSFKRHQIAKVYRRDNPSK---GRYREFYQCDFDIAGQYERMGPDFEVVKILTELLN 573 (854)
Q Consensus 520 ~p~K~y~ig~VfR~e~p~~---Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~ 573 (854)
--|+|+||++||.|..+. -|.-||+|+++|..+. + -.+++.++.+++.
T Consensus 102 -~~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~-d----~~dlm~~~e~lv~ 152 (335)
T PRK06462 102 -LGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGA-D----LDEVMDLIEDLIK 152 (335)
T ss_pred -cCcEEEEeccccCCCCCCCCCCCCCchheeeehhhcC-C----HHHHHHHHHHHHH
Confidence 369999999999998766 5788999999998774 2 1255555555544
No 98
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=97.23 E-value=0.00024 Score=84.62 Aligned_cols=104 Identities=19% Similarity=0.293 Sum_probs=66.6
Q ss_pred HHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhhh--ccCCceeeecccccchhhhhhhcc
Q 003041 441 AKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLAD--QGGELCSLRYDLTVPFARYVAMNG 518 (854)
Q Consensus 441 lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D--~~G~~l~LRpDlT~~~aR~~a~~~ 518 (854)
.-.-.++|..+...+++.|.+.||.||+||+|.... .+...+ |.... ..|..+.|+-.--...-+.++.
T Consensus 137 ~~~~l~~Rs~i~~~iR~ff~~~gFiEV~TP~L~~s~------~ega~~-f~v~~~~~~~~~~~L~qSpql~kq~l~~~-- 207 (588)
T PRK00476 137 MQKNLKLRSKVTSAIRNFLDDNGFLEIETPILTKST------PEGARD-YLVPSRVHPGKFYALPQSPQLFKQLLMVA-- 207 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECCeeecCC------CCCCcc-ceecccccCCceeecCCCHHHHHHHHHhc--
Confidence 445568889999999999999999999999987532 111111 21111 2344444431111111111111
Q ss_pred ccchhhhhhhhhhcccCCCCcccccccccccccccc
Q 003041 519 LTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQ 554 (854)
Q Consensus 519 ~~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~ 554 (854)
---|+|+||+|||+|.....|.-||+|+|+|....
T Consensus 208 -g~~rvfqi~~~FR~E~~~~~r~~EFt~le~e~af~ 242 (588)
T PRK00476 208 -GFDRYYQIARCFRDEDLRADRQPEFTQIDIEMSFV 242 (588)
T ss_pred -ccCceEEEeceeecCCCCCCcCcccccceeeecCC
Confidence 13599999999999987666655999999997765
No 99
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=97.20 E-value=0.00028 Score=78.62 Aligned_cols=116 Identities=16% Similarity=0.190 Sum_probs=71.9
Q ss_pred HHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhh-hccCCceeeecccccchhhhhhhccccch
Q 003041 444 QMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLA-DQGGELCSLRYDLTVPFARYVAMNGLTSF 522 (854)
Q Consensus 444 ~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~-D~~G~~l~LRpDlT~~~aR~~a~~~~~p~ 522 (854)
-.+++..+...+++.|..+||.||.||+|.+.. .|.. .+.|... +..|+...|+-.--...=+.++. ..-
T Consensus 7 ~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~-----~~~~-~~~f~~~~~~~~~~~yL~~Spql~~k~ll~~---g~~ 77 (329)
T cd00775 7 TFIVRSKIISYIRKFLDDRGFLEVETPMLQPIA-----GGAA-ARPFITHHNALDMDLYLRIAPELYLKRLIVG---GFE 77 (329)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCccccCC-----CCcc-ceeEEeccCCCCcceeeccCHHHHHHHHHhc---CCC
Confidence 356788888999999999999999999986432 1111 1123221 22344444542221111222222 136
Q ss_pred hhhhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhh
Q 003041 523 KRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLN 573 (854)
Q Consensus 523 K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~ 573 (854)
|+|+||++||.|....-|.-||+|+++|..+. + --|++.++.+++.
T Consensus 78 ~vf~i~~~FR~E~~~~rHl~EFt~le~e~~~~-~----~~~~m~~~e~li~ 123 (329)
T cd00775 78 RVYEIGRNFRNEGIDLTHNPEFTMIEFYEAYA-D----YNDMMDLTEDLFS 123 (329)
T ss_pred cEEEEeccccCCCCCCCCCCceEEEEEeeecC-C----HHHHHHHHHHHHH
Confidence 99999999999987666788999999997664 2 1245555444443
No 100
>PLN02850 aspartate-tRNA ligase
Probab=97.14 E-value=0.00036 Score=82.21 Aligned_cols=116 Identities=16% Similarity=0.247 Sum_probs=73.8
Q ss_pred hHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhhhccCCceeeecccccchhhhhhhccccch
Q 003041 443 EQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGLTSF 522 (854)
Q Consensus 443 ~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D~~G~~l~LRpDlT~~~aR~~a~~~~~p~ 522 (854)
.-.+++..+...+++.|..+||.||.||+|..... +...+.|.+ +..|+.+.|+----...=+.++. .--
T Consensus 223 aifrirs~i~~~~R~fl~~~gF~EV~TP~L~~~~~------egga~~F~v-~yf~~~~~L~qSpql~kq~li~~---g~~ 292 (530)
T PLN02850 223 AIFRIQSQVCNLFREFLLSKGFVEIHTPKLIAGAS------EGGSAVFRL-DYKGQPACLAQSPQLHKQMAICG---DFR 292 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHCCcEEEeCCccccCCC------ccccceeee-ccCCcceecCCCHHHHHHHHHHh---cCC
Confidence 34578888999999999999999999999843221 111224544 34566666653332222222221 135
Q ss_pred hhhhhhhhhcccCCCCc-ccccccccccc-ccccccccCCChhhHHHHHHHhh
Q 003041 523 KRHQIAKVYRRDNPSKG-RYREFYQCDFD-IAGQYERMGPDFEVVKILTELLN 573 (854)
Q Consensus 523 K~y~ig~VfR~e~p~~G-r~REf~Q~d~e-iig~~~~~~aDaEvI~l~~eil~ 573 (854)
|.|+||+|||.|..... |.-||+|.|+| -|+.. .-|++.++.+++.
T Consensus 293 rVfeIgp~FRaE~s~t~RHl~EFt~Le~Em~~~~~-----y~evm~~~E~ll~ 340 (530)
T PLN02850 293 RVFEIGPVFRAEDSFTHRHLCEFTGLDLEMEIKEH-----YSEVLDVVDELFV 340 (530)
T ss_pred ceEEEecccccCCCCCCccchhhccchhhhhhhcC-----HHHHHHHHHHHHH
Confidence 99999999999985443 45799999999 45531 1255555555554
No 101
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=97.13 E-value=0.00025 Score=79.38 Aligned_cols=102 Identities=19% Similarity=0.308 Sum_probs=62.8
Q ss_pred HHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhh----hccCCceeeecccccchhhhhhhccc
Q 003041 444 QMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLA----DQGGELCSLRYDLTVPFARYVAMNGL 519 (854)
Q Consensus 444 ~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~----D~~G~~l~LRpDlT~~~aR~~a~~~~ 519 (854)
-.+++..+.+.+++.|...||.||.||++.... .+...+.|.+. +.-|+.+-|+.-.-...=+.++..
T Consensus 21 ~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~------~~~~~~~F~v~~~~~~~~~~~~~L~~Spql~~k~ll~~g-- 92 (335)
T PF00152_consen 21 ILRIRSAILQAIREFFDKRGFIEVDTPILTSST------CEGGAEPFSVDSEPGKYFGEPAYLTQSPQLYLKRLLAAG-- 92 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-EEE---SEESSS------SSSSSCSEEEEESTTEETTEEEEE-SSSHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEcCceeeccc------cCccccccccccchhhhcccceecCcChHHHHhhhcccc--
Confidence 567888899999999999999999999986543 11112344443 123344444433322222333321
Q ss_pred cchhhhhhhhhhcccCCCCc-ccccccccccccccc
Q 003041 520 TSFKRHQIAKVYRRDNPSKG-RYREFYQCDFDIAGQ 554 (854)
Q Consensus 520 ~p~K~y~ig~VfR~e~p~~G-r~REf~Q~d~eiig~ 554 (854)
--|+|+||++||.|..... |.-||+|+++|..+.
T Consensus 93 -~~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~~ 127 (335)
T PF00152_consen 93 -LERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAFA 127 (335)
T ss_dssp -HSEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEETS
T ss_pred -chhhhheecceeccCcccccchhhhhhhhhccccC
Confidence 3589999999999987444 566999999998764
No 102
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=97.09 E-value=0.00044 Score=81.06 Aligned_cols=101 Identities=19% Similarity=0.220 Sum_probs=67.6
Q ss_pred hHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhh---hccCCceeeecccccchhhhhhhccc
Q 003041 443 EQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLA---DQGGELCSLRYDLTVPFARYVAMNGL 519 (854)
Q Consensus 443 ~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~---D~~G~~l~LRpDlT~~~aR~~a~~~~ 519 (854)
.-.++|..+...+++.|...||.||.||+|.+.. .|.. ...|. +.-+..+.||----...=|.++..
T Consensus 182 ~~~r~Rs~i~~~iR~f~~~~gFiEVeTPiL~~~~-----gGa~---a~pF~t~~~~~~~~~yL~~SpELylKrlivgG-- 251 (505)
T PRK12445 182 QTFVVRSKILAAIRQFMVARGFMEVETPMMQVIP-----GGAS---ARPFITHHNALDLDMYLRIAPELYLKRLVVGG-- 251 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEeeCCeeEecC-----CCCc---ccceecccccCCcceeeecCHHHHHHHHHhcc--
Confidence 3567888999999999999999999999996421 1222 22222 112333334433222333433321
Q ss_pred cchhhhhhhhhhcccCCCCcccccccccccccccc
Q 003041 520 TSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQ 554 (854)
Q Consensus 520 ~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~ 554 (854)
--|+|+||++||+|....-|.=||+|+++|....
T Consensus 252 -~~rVfeIg~~FRnE~~~~rH~pEFTmlE~y~a~~ 285 (505)
T PRK12445 252 -FERVFEINRNFRNEGISVRHNPEFTMMELYMAYA 285 (505)
T ss_pred -CCcEEEEehhccCCCCCCCcCcccceeeeeeecC
Confidence 3599999999999987556778999999998764
No 103
>PLN02903 aminoacyl-tRNA ligase
Probab=97.06 E-value=0.00041 Score=82.72 Aligned_cols=105 Identities=19% Similarity=0.275 Sum_probs=66.1
Q ss_pred HHhHHHHHHHhHHHHHHHHHh-cCccccCcchhHhHHhhhhccCCCchhhhhhh-hccCCceeeecccccchhhhhhhcc
Q 003041 441 AKEQMAVREKAFSIITEVFKR-HGAMALDTPVFEMRETLMGKYGEDSKLIYDLA-DQGGELCSLRYDLTVPFARYVAMNG 518 (854)
Q Consensus 441 lp~~~~~~~~i~~~l~~if~~-~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~-D~~G~~l~LRpDlT~~~aR~~a~~~ 518 (854)
+-.-.++|..+...+++.|.. +||.||+||+|..... +...+.+... ...|..+.|+----...=+.++.
T Consensus 199 ~q~~lr~Rs~i~~~iR~fl~~~~gFiEVeTPiL~~st~------eGardf~v~~~~~~g~~y~L~qSPQlykQ~Lm~~-- 270 (652)
T PLN02903 199 MNANLRLRHRVVKLIRRYLEDVHGFVEIETPILSRSTP------EGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVS-- 270 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEECCeeccCCC------CCCcccEEeeecCCCcccccCCCHHHHHHHHHhc--
Confidence 345568888999999999996 9999999999864321 1111111100 01244444442111100111111
Q ss_pred ccchhhhhhhhhhcccCCCCcccccccccccccccc
Q 003041 519 LTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQ 554 (854)
Q Consensus 519 ~~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~ 554 (854)
.--|+|+||+|||+|..+..|.-||+|+|+|....
T Consensus 271 -G~~RvFqIa~~FR~E~~~t~RhpEFTqLE~E~sf~ 305 (652)
T PLN02903 271 -GFDRYYQIARCFRDEDLRADRQPEFTQLDMELAFT 305 (652)
T ss_pred -cCCcEEEEehhhccCCCCCCcccceeeeeeeecCC
Confidence 13589999999999988777888999999997664
No 104
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=97.03 E-value=0.00055 Score=78.96 Aligned_cols=118 Identities=15% Similarity=0.221 Sum_probs=73.9
Q ss_pred HHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhhhccCCceeeecccccchhhhhhhcccc
Q 003041 441 AKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGLT 520 (854)
Q Consensus 441 lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D~~G~~l~LRpDlT~~~aR~~a~~~~~ 520 (854)
.-.-.+++..+...+++.|.++||.||.||++.... .+...+.|.+ +.-|+.+-|+-..-...=+.++. .
T Consensus 129 ~~~~~r~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~------~eg~~~~f~v-~~~~~~~yL~~Spql~~q~li~~---g 198 (428)
T TIGR00458 129 VQAIFRIRSGVLESVREFLAEEGFIEVHTPKLVASA------TEGGTELFPI-TYFEREAFLGQSPQLYKQQLMAA---G 198 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEeCCceecCC------CCCCcceeee-EecCCcEEECcCHHHHHHHHHhc---c
Confidence 345578889999999999999999999999985322 1111223443 22234444543222221122221 1
Q ss_pred chhhhhhhhhhcccCCCCc-cccccccccccccccccccCCChhhHHHHHHHhh
Q 003041 521 SFKRHQIAKVYRRDNPSKG-RYREFYQCDFDIAGQYERMGPDFEVVKILTELLN 573 (854)
Q Consensus 521 p~K~y~ig~VfR~e~p~~G-r~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~ 573 (854)
--|.|+||++||.|..... |.-||+|+++|.... +. -+++.++.+++.
T Consensus 199 ~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~-~~----~dlm~~~e~li~ 247 (428)
T TIGR00458 199 FERVYEIGPIFRAEEHNTHRHLNEATSIDIEMAFE-DH----HDVMDILEELVV 247 (428)
T ss_pred cCcEEEEecccccCCCCCccchheeeEeeeeeccC-CH----HHHHHHHHHHHH
Confidence 3599999999999987654 557999999997764 21 245555544443
No 105
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=97.02 E-value=0.00053 Score=82.55 Aligned_cols=105 Identities=15% Similarity=0.216 Sum_probs=65.7
Q ss_pred HHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchh-hhhhhhccCCceeeecccccchhhhhhhccc
Q 003041 441 AKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKL-IYDLADQGGELCSLRYDLTVPFARYVAMNGL 519 (854)
Q Consensus 441 lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~-~y~~~D~~G~~l~LRpDlT~~~aR~~a~~~~ 519 (854)
.-.-.++|..+...+++.|..+||.||.||+|.... .+.... ++...-..|..+.|+-.--...=+.++ .
T Consensus 152 ~~~~lr~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~------~eGAr~~~~p~~~~~~~~y~L~qSPQlykq~lm~---~ 222 (706)
T PRK12820 152 MQDHLAKRHRIIKCARDFLDSRGFLEIETPILTKST------PEGARDYLVPSRIHPKEFYALPQSPQLFKQLLMI---A 222 (706)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEeCCccccCC------CCCCcceEEeeecCCCcceecCCCHHHHHHHHHh---c
Confidence 345568889999999999999999999999986422 111111 111100123334443111000001111 1
Q ss_pred cchhhhhhhhhhcccCCCCcccccccccccccccc
Q 003041 520 TSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQ 554 (854)
Q Consensus 520 ~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~ 554 (854)
---|+|+|+++||.|....-|.-||+|+|+|....
T Consensus 223 G~~rvfqI~~~FR~E~~~t~r~pEFT~LE~E~af~ 257 (706)
T PRK12820 223 GFERYFQLARCFRDEDLRPNRQPEFTQLDIEASFI 257 (706)
T ss_pred cCCcEEEEechhcCCCCCCCcCccccccceeeccC
Confidence 13589999999999987777778999999997664
No 106
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=97.00 E-value=0.00061 Score=79.13 Aligned_cols=118 Identities=19% Similarity=0.250 Sum_probs=75.0
Q ss_pred HhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhh--------hccCCceeeecccccchhhh
Q 003041 442 KEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLA--------DQGGELCSLRYDLTVPFARY 513 (854)
Q Consensus 442 p~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~--------D~~G~~l~LRpDlT~~~aR~ 513 (854)
-.-.+++..+...+++.|..+||.||.||++.... ++...+.|.+. +--|..+.|+.-..... +.
T Consensus 130 ~~~l~~Rs~i~~~iR~f~~~~gf~EV~TP~L~~~~------~eg~~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~l-q~ 202 (450)
T PRK03932 130 GAVMRIRNTLAQAIHEFFNENGFVWVDTPIITASD------CEGAGELFRVTTLDLDFSKDFFGKEAYLTVSGQLYA-EA 202 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEecCCceeccC------CCCCCCceEeecccccccccccCCCcccccCHHHHH-HH
Confidence 34567888899999999999999999999987532 11112244431 11234444443332222 33
Q ss_pred hhhccccchhhhhhhhhhcccCCCCc-cccccccccccccccccccCCChhhHHHHHHHhhh
Q 003041 514 VAMNGLTSFKRHQIAKVYRRDNPSKG-RYREFYQCDFDIAGQYERMGPDFEVVKILTELLNE 574 (854)
Q Consensus 514 ~a~~~~~p~K~y~ig~VfR~e~p~~G-r~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~ 574 (854)
++. .--|.|+|+++||.|..... |.-||+|+++|.... +. .|++.++.+++..
T Consensus 203 l~~---g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~~~~-~~----~~~m~~~e~li~~ 256 (450)
T PRK03932 203 YAM---ALGKVYTFGPTFRAENSNTRRHLAEFWMIEPEMAFA-DL----EDNMDLAEEMLKY 256 (450)
T ss_pred HHh---ccCCeEEeeeccccCCCCCccccccccccceEEecc-CH----HHHHHHHHHHHHH
Confidence 331 23699999999999976443 557999999997754 21 3566555555543
No 107
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=96.99 E-value=0.00059 Score=80.92 Aligned_cols=101 Identities=19% Similarity=0.279 Sum_probs=67.5
Q ss_pred hHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhhhc---cCCceeeecccccchhhhhhhccc
Q 003041 443 EQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQ---GGELCSLRYDLTVPFARYVAMNGL 519 (854)
Q Consensus 443 ~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D~---~G~~l~LRpDlT~~~aR~~a~~~~ 519 (854)
.-.++|.++...+++.|..+||.||+||+|.+.. .|.. ...|..+ -+..+-||----...=|.++..
T Consensus 251 ~ifr~RS~Ii~aiR~Ff~~rGFlEVeTPiL~~~~-----GGA~---a~PF~T~~n~~d~~lYLriSpEL~lKrLlvgG-- 320 (585)
T PTZ00417 251 STFITRTKIINYLRNFLNDRGFIEVETPTMNLVA-----GGAN---ARPFITHHNDLDLDLYLRIATELPLKMLIVGG-- 320 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHCCeEEEeCCeeeccC-----Cccc---ceeEEecccCCCcceEEeecHHHHHHHHHHhC--
Confidence 3567888999999999999999999999997531 1222 1222211 1233445422222333443321
Q ss_pred cchhhhhhhhhhcccCCCCcccccccccccccccc
Q 003041 520 TSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQ 554 (854)
Q Consensus 520 ~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~ 554 (854)
--|+|+||++||+|....-|.=||+|++++....
T Consensus 321 -~~rVfeIgp~FRnE~~~~rHnpEFTmlE~y~ay~ 354 (585)
T PTZ00417 321 -IDKVYEIGKVFRNEGIDNTHNPEFTSCEFYWAYA 354 (585)
T ss_pred -CCCEEEEcccccCCCCCCCccceeeeeeeeeecC
Confidence 3599999999999987666777999999997653
No 108
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.97 E-value=0.0011 Score=76.22 Aligned_cols=100 Identities=19% Similarity=0.318 Sum_probs=67.4
Q ss_pred hHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCc-hhhhhhhhccCCceeeecccccchhhhhhhccccc
Q 003041 443 EQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDS-KLIYDLADQGGELCSLRYDLTVPFARYVAMNGLTS 521 (854)
Q Consensus 443 ~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~-k~~y~~~D~~G~~l~LRpDlT~~~aR~~a~~~~~p 521 (854)
.....|.++...+|+.|..+||.||+||+|... +.|.. +-++.---+.|+-++||-. +++-..+-+- .--
T Consensus 139 ~~l~lR~kv~~~iR~~ld~~gF~EiETPiLtkS------TPEGARDfLVPSRv~~G~FYALPQS--PQlfKQLLMv-sGf 209 (585)
T COG0173 139 KNLKLRSKVTKAIRNFLDDQGFLEIETPILTKS------TPEGARDFLVPSRVHPGKFYALPQS--PQLFKQLLMV-AGF 209 (585)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCeEeecCccccC------CCccccccccccccCCCceeecCCC--HHHHHHHHHH-hcc
Confidence 455778888899999999999999999998532 22211 1112112246778888632 2222222111 013
Q ss_pred hhhhhhhhhhcccCCCCccccccccccccc
Q 003041 522 FKRHQIAKVYRRDNPSKGRYREFYQCDFDI 551 (854)
Q Consensus 522 ~K~y~ig~VfR~e~p~~Gr~REf~Q~d~ei 551 (854)
-|+|+|.+|||+|-.+.-|.=||+|.|+|.
T Consensus 210 dRYyQIarCFRDEDlRaDRQPEFTQiD~Em 239 (585)
T COG0173 210 DRYYQIARCFRDEDLRADRQPEFTQIDLEM 239 (585)
T ss_pred cceeeeeeeecccccccccCCcceeEeEEe
Confidence 488999999999988888888999999995
No 109
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=96.95 E-value=0.00059 Score=79.92 Aligned_cols=117 Identities=17% Similarity=0.193 Sum_probs=73.0
Q ss_pred hHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhh-hhccCCceeeecccccchhhhhhhccccc
Q 003041 443 EQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDL-ADQGGELCSLRYDLTVPFARYVAMNGLTS 521 (854)
Q Consensus 443 ~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~-~D~~G~~l~LRpDlT~~~aR~~a~~~~~p 521 (854)
.-.++|..+...+++.|..+||.||.||++.+.. .|.. .+.|.. .+.-+..+.|+----...=|.++. -.
T Consensus 170 ~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~-----~Ga~-a~pF~t~~~~~~~~~yL~~Spql~lk~l~v~---g~ 240 (491)
T PRK00484 170 ETFRKRSKIISAIRRFLDNRGFLEVETPMLQPIA-----GGAA-ARPFITHHNALDIDLYLRIAPELYLKRLIVG---GF 240 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCceeccC-----CCcc-ceeeeeccccCCCceEeccCHHHHHHHHHhc---cC
Confidence 4568888999999999999999999999996421 2221 112321 122233333542221122233322 13
Q ss_pred hhhhhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhh
Q 003041 522 FKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLN 573 (854)
Q Consensus 522 ~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~ 573 (854)
-|.|+||++||+|....-|.=||+|+++|.... + -.+++.++.+++.
T Consensus 241 ~rVfei~~~FR~E~~~~rH~pEFt~lE~e~a~~-d----~~d~m~~~E~li~ 287 (491)
T PRK00484 241 ERVYEIGRNFRNEGIDTRHNPEFTMLEFYQAYA-D----YNDMMDLTEELIR 287 (491)
T ss_pred CcEEEEecceecCCCCCCcCCceEEEEEEEecC-C----HHHHHHHHHHHHH
Confidence 599999999999987766788999999996653 2 1245555444443
No 110
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=96.94 E-value=0.00065 Score=78.69 Aligned_cols=104 Identities=14% Similarity=0.178 Sum_probs=68.1
Q ss_pred HHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhhhccCCceeeecccccchhhhhhhcccc
Q 003041 441 AKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGLT 520 (854)
Q Consensus 441 lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D~~G~~l~LRpDlT~~~aR~~a~~~~~ 520 (854)
.-.-.+++..+...+++.|.++||.||.||++..... ..| .+.|.+ +.-|+.+.|+-..-...=+.++. -
T Consensus 132 ~~~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~---eg~---~~~f~~-~~~~~~~~L~~Spql~~q~l~~~---g 201 (437)
T PRK05159 132 VRAIFKIRSEVLRAFREFLYENGFTEIFTPKIVASGT---EGG---AELFPI-DYFEKEAYLAQSPQLYKQMMVGA---G 201 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEeCCcccccCC---CCC---cceEeE-EecCCceEecCCHHHHHHHHHhc---C
Confidence 4456788899999999999999999999999843211 111 123443 22344454543322221122211 1
Q ss_pred chhhhhhhhhhcccCCCCc-ccccccccccccccc
Q 003041 521 SFKRHQIAKVYRRDNPSKG-RYREFYQCDFDIAGQ 554 (854)
Q Consensus 521 p~K~y~ig~VfR~e~p~~G-r~REf~Q~d~eiig~ 554 (854)
--|.|+||++||+|..... |.-||+|+++|....
T Consensus 202 ~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~ 236 (437)
T PRK05159 202 FERVFEIGPVFRAEEHNTSRHLNEYTSIDVEMGFI 236 (437)
T ss_pred CCcEEEEeceeeCCCCCCcccchhhheeeeeeeec
Confidence 3599999999999987654 557999999997654
No 111
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.91 E-value=0.0011 Score=74.00 Aligned_cols=147 Identities=18% Similarity=0.230 Sum_probs=103.1
Q ss_pred CCccchhhH--HhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC---chhhhhhhhccCCceeeecccc
Q 003041 433 LPKGTRDFA--KEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDLT 507 (854)
Q Consensus 433 ~p~G~~D~l--p~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~~G~~l~LRpDlT 507 (854)
...|.+-|+ ...+.+-+.+.++-.+....+||.++.||.|...++... .|.. ..+.|..+|.. ....|--..-
T Consensus 171 ~vsG~r~Yyl~g~~a~LeqALi~yal~~l~~kGy~pl~~P~i~rkeVm~~-cg~~~~~d~~~~y~ld~~-~~~~LiaTaE 248 (455)
T KOG2509|consen 171 KVSGHRGYYLKGAGAFLEQALINYALDFLNAKGYTPLTTPDILRKEVMQK-CGQLPRFDEEQYYVLDGG-DEKYLIATAE 248 (455)
T ss_pred hcccccceEEcCHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHHH-hccCcCCCcceEEeecCC-ccceeEeecc
Confidence 345776664 455667777888889999999999999999999998753 5543 34567777755 4556777777
Q ss_pred cchhhhhhhc----cccchhhhhhhhhhcccCCCC-----c--cccccccccccccccccccCCC-hhhHHHHHHHhhhc
Q 003041 508 VPFARYVAMN----GLTSFKRHQIAKVYRRDNPSK-----G--RYREFYQCDFDIAGQYERMGPD-FEVVKILTELLNEL 575 (854)
Q Consensus 508 ~~~aR~~a~~----~~~p~K~y~ig~VfR~e~p~~-----G--r~REf~Q~d~eiig~~~~~~aD-aEvI~l~~eil~~L 575 (854)
.|+|-+.... ..+|+|+.-+.+|||.|.... | |.-||.-+..-+++.++..... -|+|....+++++|
T Consensus 249 ~plAa~~~~e~~~~~~lPiK~vg~S~CfR~EaGs~G~d~~GlyRVHqF~KVE~Fvit~Pe~S~~~~eEmi~~~eef~qsL 328 (455)
T KOG2509|consen 249 QPLAAYHRDEWLEEDQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFEKVEQFVITGPEDSWEMLEEMINNQEEFYQSL 328 (455)
T ss_pred chhhhhhcccccccccCceeeeehhHHHHHHhhhcccccccceeeeeeeeeEEEEecCcchhHHHHHHHHHHHHHHHHHh
Confidence 7888776642 467999999999999986322 3 4456765554444443321112 37899999999999
Q ss_pred CCCccee
Q 003041 576 DIGDYEI 582 (854)
Q Consensus 576 gl~~~~i 582 (854)
|+ +|.+
T Consensus 329 gi-p~rv 334 (455)
T KOG2509|consen 329 GL-PYRV 334 (455)
T ss_pred CC-ceeE
Confidence 98 3544
No 112
>PLN02502 lysyl-tRNA synthetase
Probab=96.90 E-value=0.00072 Score=79.90 Aligned_cols=103 Identities=20% Similarity=0.261 Sum_probs=67.3
Q ss_pred hHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhh-hccCCceeeecccccchhhhhhhccccc
Q 003041 443 EQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLA-DQGGELCSLRYDLTVPFARYVAMNGLTS 521 (854)
Q Consensus 443 ~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~-D~~G~~l~LRpDlT~~~aR~~a~~~~~p 521 (854)
.-.++|..|...+++.|...||.||.||+|.+.. .|... ..|... +.-+..+.||----...=|.++. .-
T Consensus 227 ~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~-----gGA~a-~pF~t~~n~~~~~~yL~~Spel~lK~L~v~---g~ 297 (553)
T PLN02502 227 DIFRTRAKIISYIRRFLDDRGFLEVETPMLNMIA-----GGAAA-RPFVTHHNDLNMDLYLRIATELHLKRLVVG---GF 297 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeeeccC-----CCccc-cceeeecccCCcceeeecCHHHHHHHHHHh---cc
Confidence 4567888899999999999999999999986422 12211 122111 11233344443222222233332 13
Q ss_pred hhhhhhhhhhcccCCCCcccccccccccccccc
Q 003041 522 FKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQ 554 (854)
Q Consensus 522 ~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~ 554 (854)
-|+|+||++||+|....-|.=||+|+++|....
T Consensus 298 ~rVfeIg~~FRnE~~~~rH~pEFtmlE~y~a~~ 330 (553)
T PLN02502 298 ERVYEIGRQFRNEGISTRHNPEFTTCEFYQAYA 330 (553)
T ss_pred CCEEEEcCeeeCCCCCCccccceeehhhhhhcC
Confidence 699999999999987766788999999997654
No 113
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=96.89 E-value=0.00076 Score=80.47 Aligned_cols=118 Identities=14% Similarity=0.256 Sum_probs=73.2
Q ss_pred hHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhh-hccCCceeeecccccchhhhhhhccccc
Q 003041 443 EQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLA-DQGGELCSLRYDLTVPFARYVAMNGLTS 521 (854)
Q Consensus 443 ~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~-D~~G~~l~LRpDlT~~~aR~~a~~~~~p 521 (854)
.-.++|..+...+++.|...||.||+||+|.+. .++...+.|... +..+..+.||----...=|.++. --
T Consensus 231 ~ifr~Rs~I~~aiR~ff~~~gFlEVeTPiL~~~------~~ga~a~pF~t~~n~~~~~~yL~~SPELylKrLivg---G~ 301 (659)
T PTZ00385 231 ETIKKRHVMLQALRDYFNERNFVEVETPVLHTV------ASGANAKSFVTHHNANAMDLFLRVAPELHLKQCIVG---GM 301 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEeeCCEeecc------CCCCCccceEeecccCCCCEEecCChHHHHHHHhhc---cc
Confidence 356788889999999999999999999999532 122111233221 11123333432222222233321 13
Q ss_pred hhhhhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhhh
Q 003041 522 FKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNE 574 (854)
Q Consensus 522 ~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~ 574 (854)
-|+|+||++||+|....-|.=||+|+++|.... + .-+++.++.+++..
T Consensus 302 erVyeIg~~FRnE~~~~rH~pEFTmlE~y~a~~-d----~~d~m~l~E~li~~ 349 (659)
T PTZ00385 302 ERIYEIGKVFRNEDADRSHNPEFTSCEFYAAYH-T----YEDLMPMTEDIFRQ 349 (659)
T ss_pred CCEEEEeceecCCCCCCCccccccceeeeeecC-C----HHHHHHHHHHHHHH
Confidence 699999999999987666788999999997654 1 12455555555443
No 114
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=96.88 E-value=0.0007 Score=79.36 Aligned_cols=103 Identities=17% Similarity=0.200 Sum_probs=67.7
Q ss_pred hHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhh-hccCCceeeecccccchhhhhhhccccc
Q 003041 443 EQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLA-DQGGELCSLRYDLTVPFARYVAMNGLTS 521 (854)
Q Consensus 443 ~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~-D~~G~~l~LRpDlT~~~aR~~a~~~~~p 521 (854)
.-.++|..|...+++.|..+||.||.||+|.+.. .|.. -+.|... +.-|..+.||----...=|.++.. -
T Consensus 170 ~~~r~Rs~i~~~iR~fl~~~gF~EVeTP~L~~~~-----gga~-a~pF~t~~~~~~~~~yLriSpELylKrlivgG---~ 240 (496)
T TIGR00499 170 QTFLVRSKIIKAIRRFLDDRGFIEVETPMLQVIP-----GGAN-ARPFITHHNALDMDLYLRIAPELYLKRLIVGG---F 240 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHCcCEEEeCCeeecCC-----CCcc-ceeEEeecccCCCceEEecCHHHHHHHHHhCC---C
Confidence 4567888899999999999999999999986432 1221 1122211 112333335433222233443321 3
Q ss_pred hhhhhhhhhhcccCCCCcccccccccccccccc
Q 003041 522 FKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQ 554 (854)
Q Consensus 522 ~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~ 554 (854)
-|+|+||++||+|....-|.=||+|+++|....
T Consensus 241 ~rVfeIg~~FRnE~~~~rH~pEFTmlE~y~a~~ 273 (496)
T TIGR00499 241 EKVYEIGRNFRNEGVDTTHNPEFTMIEFYQAYA 273 (496)
T ss_pred CceEEEecceecCCCCCcccchhheeehhhhcC
Confidence 599999999999987666778999999997654
No 115
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=96.84 E-value=0.0011 Score=78.14 Aligned_cols=116 Identities=13% Similarity=0.232 Sum_probs=71.5
Q ss_pred hHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhhhccCCceeeecccccchhhhhhhccccch
Q 003041 443 EQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGLTSF 522 (854)
Q Consensus 443 ~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D~~G~~l~LRpDlT~~~aR~~a~~~~~p~ 522 (854)
.-.+++..+...+++.|..+||.||.||.|.... .+...+.|.+ +.-|+.+.|+-.--.. -+.++.. ---
T Consensus 211 ~i~r~rs~i~~~~R~fl~~~gFiEV~TP~L~~~~------~egga~~F~v-~yf~~~~~L~qSpql~-kq~li~~--g~~ 280 (550)
T PTZ00401 211 AIFRLQSRVCQYFRQFLIDSDFCEIHSPKIINAP------SEGGANVFKL-EYFNRFAYLAQSPQLY-KQMVLQG--DVP 280 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCccccCC------CCcccccccc-ccCCCCeecCCCHHHH-HHHHHhc--CCC
Confidence 3457788899999999999999999999986432 1111224544 2234445454322111 2222211 135
Q ss_pred hhhhhhhhhcccCCCCc-cccccccccccc-cccccccCCChhhHHHHHHHhh
Q 003041 523 KRHQIAKVYRRDNPSKG-RYREFYQCDFDI-AGQYERMGPDFEVVKILTELLN 573 (854)
Q Consensus 523 K~y~ig~VfR~e~p~~G-r~REf~Q~d~ei-ig~~~~~~aDaEvI~l~~eil~ 573 (854)
|+|+||+|||.|..... |.-||+|+|+|. |+.. .-|++.++.+++.
T Consensus 281 rVfeI~p~FRaE~s~T~RHl~EFt~Le~E~~~~~~-----y~evm~~~e~l~~ 328 (550)
T PTZ00401 281 RVFEVGPVFRSENSNTHRHLTEFVGLDVEMRINEH-----YYEVLDLAESLFN 328 (550)
T ss_pred CEEEEeCeEeCCCCCCCCCccchhhhhhhhHhcCC-----HHHHHHHHHHHHH
Confidence 99999999999987543 456999999985 4421 1255555544443
No 116
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=96.75 E-value=0.0014 Score=76.25 Aligned_cols=101 Identities=17% Similarity=0.240 Sum_probs=64.3
Q ss_pred HHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhhh--------ccCCceeeecccccchhhhhh
Q 003041 444 QMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLAD--------QGGELCSLRYDLTVPFARYVA 515 (854)
Q Consensus 444 ~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D--------~~G~~l~LRpDlT~~~aR~~a 515 (854)
-.+++..+...+++.|..+||.||.||++.... ++...+.|.+.. --|+.+.|+-.... +.+.++
T Consensus 135 ~lr~Rs~i~~~~r~~~~~~gf~eV~TP~l~~~~------~eg~~~~F~v~~~~~~~~~~~~~~~~yL~~Spql-~lq~l~ 207 (453)
T TIGR00457 135 VMRVRNALSQAIHRYFQENGFTWVSPPILTSND------CEGAGELFRVSTDGIDFSQDFFGKEAYLTVSGQL-YLETYA 207 (453)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEecCCeEeecC------CCCCCCceEecccccccchhccCCccccccCHHH-HHHHHh
Confidence 458889999999999999999999999986432 111122343321 11233333322111 111222
Q ss_pred hccccchhhhhhhhhhcccCCCC-cccccccccccccccc
Q 003041 516 MNGLTSFKRHQIAKVYRRDNPSK-GRYREFYQCDFDIAGQ 554 (854)
Q Consensus 516 ~~~~~p~K~y~ig~VfR~e~p~~-Gr~REf~Q~d~eiig~ 554 (854)
..--|.|+||++||.|.... -|.-||+|+++|....
T Consensus 208 ---~g~~rVf~i~~~FR~E~~~t~rHl~EFt~le~e~~~~ 244 (453)
T TIGR00457 208 ---LALSKVYTFGPTFRAEKSNTSRHLSEFWMIEPEMAFA 244 (453)
T ss_pred ---hcccCceEeeeccccCCCCCCcCcchhccceeeeecC
Confidence 12369999999999997764 3557999999997754
No 117
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=96.57 E-value=0.0017 Score=76.72 Aligned_cols=35 Identities=14% Similarity=0.264 Sum_probs=30.2
Q ss_pred HHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhH
Q 003041 441 AKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMR 475 (854)
Q Consensus 441 lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~ 475 (854)
+-.-+++|..+...+++.|..+||.+|.||+|...
T Consensus 211 ~~avlRiRs~l~~a~r~ff~~~gF~eI~TPiit~s 245 (586)
T PTZ00425 211 ISSVIRIRNALAIATHLFFQSRGFLYIHTPLITTS 245 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEeeCCeeccc
Confidence 44567889999999999999999999999998643
No 118
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis]
Probab=96.36 E-value=0.006 Score=68.83 Aligned_cols=101 Identities=21% Similarity=0.307 Sum_probs=61.3
Q ss_pred HHHHHHhHHHHHHHH-HhcCccccCcchhHhHHhhhhccCCCchhhhhhhhccCCceeeecccccchhhhhhhccccchh
Q 003041 445 MAVREKAFSIITEVF-KRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGLTSFK 523 (854)
Q Consensus 445 ~~~~~~i~~~l~~if-~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D~~G~~l~LRpDlT~~~aR~~a~~~~~p~K 523 (854)
.+.|..+...+++.| .+|||.||+||++..+. -|...+-++.--.+.|.-++|+-. ++--..+-+- .---|
T Consensus 178 LrlRS~~v~~iR~yl~n~~GFvevETPtLFkrT-----PgGA~EFvVPtr~~~g~FYaLpQS--PQQfKQlLMv-sGidr 249 (628)
T KOG2411|consen 178 LRLRSNVVKKIRRYLNNRHGFVEVETPTLFKRT-----PGGAREFVVPTRTPRGKFYALPQS--PQQFKQLLMV-SGIDR 249 (628)
T ss_pred HHHHHHHHHHHHHHHhhhcCeeeccCcchhccC-----CCccceeecccCCCCCceeecCCC--HHHHHHHHHH-hchhh
Confidence 356666777788877 58999999999975432 111111111112234666766532 1111111110 01248
Q ss_pred hhhhhhhhcccCCCCccccccccccccccc
Q 003041 524 RHQIAKVYRRDNPSKGRYREFYQCDFDIAG 553 (854)
Q Consensus 524 ~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig 553 (854)
+|++++|||+|-.+.-|.=||+|.|+|.-=
T Consensus 250 YyQiARCfRDEdlR~DRQPEFTQvD~EMsF 279 (628)
T KOG2411|consen 250 YYQIARCFRDEDLRADRQPEFTQVDMEMSF 279 (628)
T ss_pred HHhHHhhhcccccCcccCCcceeeeeEEec
Confidence 899999999997777788899999999643
No 119
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=96.36 E-value=0.0021 Score=81.84 Aligned_cols=103 Identities=13% Similarity=0.151 Sum_probs=64.9
Q ss_pred hHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhh-hhccCCceeeecccccchhhhhhhccccc
Q 003041 443 EQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDL-ADQGGELCSLRYDLTVPFARYVAMNGLTS 521 (854)
Q Consensus 443 ~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~-~D~~G~~l~LRpDlT~~~aR~~a~~~~~p 521 (854)
.-.++|.++...+++.|..+||.||+||+|...+ .|.. -+.|.. .+.-+..+.||----...=|.++. --
T Consensus 768 ~~~r~Rs~i~~~iR~fl~~~gFlEVeTPiL~~~~-----gGa~-a~pF~t~~~~~~~~~yLriSPELylKrLivg---G~ 838 (1094)
T PRK02983 768 DLLRARSAVVRAVRETLVARGFLEVETPILQQVH-----GGAN-ARPFVTHINAYDMDLYLRIAPELYLKRLCVG---GV 838 (1094)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCEeeccC-----CCcc-cceeEeeecCCCccchhhcChHHHHHHHHhc---cc
Confidence 3457888899999999999999999999996322 1221 112321 011122222221111111222221 13
Q ss_pred hhhhhhhhhhcccCCCCcccccccccccccccc
Q 003041 522 FKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQ 554 (854)
Q Consensus 522 ~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~ 554 (854)
-|.|+||++||+|....-|.=||+|+++|....
T Consensus 839 erVFEIg~~FRnE~~~~rHnpEFTmLE~y~a~~ 871 (1094)
T PRK02983 839 ERVFELGRNFRNEGVDATHNPEFTLLEAYQAHA 871 (1094)
T ss_pred CceEEEcceecCCCCCCCccccccchhhhhhcC
Confidence 699999999999987666788999999997754
No 120
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=96.29 E-value=0.0025 Score=69.30 Aligned_cols=81 Identities=25% Similarity=0.264 Sum_probs=63.2
Q ss_pred eeeecccccchhhhhhh---ccccchhhhhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhhhcC
Q 003041 500 CSLRYDLTVPFARYVAM---NGLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELD 576 (854)
Q Consensus 500 l~LRpDlT~~~aR~~a~---~~~~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~Lg 576 (854)
..||-..|.--||.+-+ ....|.|+|.|.+|||+|.....+.-||+|+.--|.+.. ..-..+|.++.+++..+|
T Consensus 309 nvLRTHTTavSArmLy~LAk~~f~p~K~FSIDrVFRNEtvDaTHLAEFHQVEGviad~g---ltLgdLig~l~~ff~~lg 385 (483)
T KOG2784|consen 309 NVLRTHTTAVSARMLYRLAKKGFKPAKYFSIDRVFRNETVDATHLAEFHQVEGVIADKG---LTLGDLIGILMEFFTKLG 385 (483)
T ss_pred HHHhhhhHHhhHHHHHHHHhCCCCcccccchhhhhhccccchHHHHHHhhhceeeecCC---CcHHHHHHHHHHHHhccC
Confidence 46777777777886643 456799999999999999988889999999987666652 234678999999999998
Q ss_pred CCcceee
Q 003041 577 IGDYEIK 583 (854)
Q Consensus 577 l~~~~i~ 583 (854)
+++..++
T Consensus 386 ~tnlrfK 392 (483)
T KOG2784|consen 386 ATNLRFK 392 (483)
T ss_pred Ccccccc
Confidence 8654443
No 121
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=96.25 E-value=0.0062 Score=69.15 Aligned_cols=88 Identities=10% Similarity=0.175 Sum_probs=69.8
Q ss_pred ccCCceeeecccccchhhhhhh---ccccchhhhhhhhhhcccC-CCCccccccccccccccccccccCCChhhHHHHHH
Q 003041 495 QGGELCSLRYDLTVPFARYVAM---NGLTSFKRHQIAKVYRRDN-PSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTE 570 (854)
Q Consensus 495 ~~G~~l~LRpDlT~~~aR~~a~---~~~~p~K~y~ig~VfR~e~-p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~e 570 (854)
+.-..+.||.-+|+...|.+.. +...|+|+|++|+|||+|. ...-|.++|+|+++=+++..- .=.++..++..
T Consensus 178 p~s~~~lLRTHTTpgqirtL~~L~~~~~~PiRIFsIGRVfRrD~~~DaTHl~eFhQlEGLVVdedV---Sf~DLKgvLe~ 254 (533)
T TIGR00470 178 PESTTLTLRSHMTSGWFITLSSIIDKRKLPLKLFSIDRCFRREQREDRSHLMTYHSASCVVVDEEV---SVDDGKAVAEG 254 (533)
T ss_pred hHhhCcccccCChhHHHHHHHHHhhcCCCCeEEEeeeeEEecCCCCCCccCceeeeEEEEEECCCC---CHHHHHHHHHH
Confidence 3445678999999988887764 5678999999999999985 455789999999999998632 34688899999
Q ss_pred HhhhcCCCcceeeec
Q 003041 571 LLNELDIGDYEIKLN 585 (854)
Q Consensus 571 il~~Lgl~~~~i~Ln 585 (854)
+++.||..++.++=+
T Consensus 255 LLr~LG~~~vRFRPs 269 (533)
T TIGR00470 255 LLAQFGFTKFRFRPD 269 (533)
T ss_pred HHHHhCCceEEeccC
Confidence 999998754555533
No 122
>PLN02603 asparaginyl-tRNA synthetase
Probab=96.23 E-value=0.0047 Score=73.18 Aligned_cols=105 Identities=14% Similarity=0.295 Sum_probs=63.6
Q ss_pred hHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhhh------c-cCC-ceeeec--ccccchhh
Q 003041 443 EQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLAD------Q-GGE-LCSLRY--DLTVPFAR 512 (854)
Q Consensus 443 ~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D------~-~G~-~l~LRp--DlT~~~aR 512 (854)
.-.++|..+...+++.|..+||.+|.||+|...+ .+...++|.+.. + .|. ...|+- +..+.+..
T Consensus 224 ai~RiRS~i~~air~ff~~~gF~eV~TPiLt~s~------~EGA~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~~~ 297 (565)
T PLN02603 224 AVARVRNALAYATHKFFQENGFVWVSSPIITASD------CEGAGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQ 297 (565)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeecccC------CCccccCceeeeccccccccccccccccccCcccccccch
Confidence 3458889999999999999999999999986432 122233554421 1 111 112221 11110100
Q ss_pred -------hhhhcc--------ccchhhhhhhhhhcccCCCCc-cccccccccccccc
Q 003041 513 -------YVAMNG--------LTSFKRHQIAKVYRRDNPSKG-RYREFYQCDFDIAG 553 (854)
Q Consensus 513 -------~~a~~~--------~~p~K~y~ig~VfR~e~p~~G-r~REf~Q~d~eiig 553 (854)
++.... ..--|.|+||++||.|+.... |.-||+|+++|+-.
T Consensus 298 dyF~~~~~LtvS~QL~~E~~~~~l~rVy~igp~FRaE~s~T~RHL~EF~mlE~E~af 354 (565)
T PLN02603 298 DFFGKPAFLTVSGQLNGETYATALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAF 354 (565)
T ss_pred hhhCcceeeccCchHHHHHHHhcccceEEEecceeCCCCCCccccccceeeeeeeec
Confidence 111000 012589999999999987654 55799999999754
No 123
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=95.92 E-value=0.0083 Score=71.67 Aligned_cols=126 Identities=17% Similarity=0.172 Sum_probs=90.3
Q ss_pred HHHhHHHHHHHHHhcCccccCcchhHhHHh-hhhccCCCch-hhhhhhhc-cCCceeeecccccchhhhhhhcc--ccch
Q 003041 448 REKAFSIITEVFKRHGAMALDTPVFEMRET-LMGKYGEDSK-LIYDLADQ-GGELCSLRYDLTVPFARYVAMNG--LTSF 522 (854)
Q Consensus 448 ~~~i~~~l~~if~~~G~~eI~tP~le~~e~-~~~~~g~~~k-~~y~~~D~-~G~~l~LRpDlT~~~aR~~a~~~--~~p~ 522 (854)
.+++.+.+++.+...||.|+.|..|...+. +.. .+-... ..+++..+ +.+.-.||+.+++++.+.++.|. ..++
T Consensus 361 ~~~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~-~~~~~~~~~i~l~NPls~e~svLRtsLlpgLL~~~~~N~~~~~~~ 439 (552)
T PRK09616 361 IEKLERAIRDLMVGLGFQEVMNFTLTSEEVLFEK-MNLEPEEDYVEVLNPISEDYTVVRTSLLPSLLEFLSNNKHREYPQ 439 (552)
T ss_pred HHHHHHHHHHHHHhCCcceeccceEechHHHHHH-hCCCCCCCeEEEcCCCccchheEeccchHHHHHHHHhccCCCCCe
Confidence 456677789999999999999999877654 332 322211 24566655 55677899999999999998763 4579
Q ss_pred hhhhhhhhhcccCCCCccccccccccccccccccccCCCh-hhHHHHHHHhhhcCCC
Q 003041 523 KRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDF-EVVKILTELLNELDIG 578 (854)
Q Consensus 523 K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDa-EvI~l~~eil~~Lgl~ 578 (854)
|+|++|+||+.+..+...++|+.+.++=+.|. ..|. ++-.++..++..+|++
T Consensus 440 ~lFEiG~Vf~~~~~~~~~~~e~~~l~~~~~g~----~~df~dlKg~ve~ll~~lgi~ 492 (552)
T PRK09616 440 KIFEIGDVVLIDESTETGTRTERKLAAAIAHS----EASFTEIKSVVQALLRELGIE 492 (552)
T ss_pred eEEEeeEEEecCCccccCcchhhEEEEEEECC----CCCHHHHHHHHHHHHHHcCCe
Confidence 99999999986532222467888888777774 1343 5556777778888863
No 124
>PLN02221 asparaginyl-tRNA synthetase
Probab=95.90 E-value=0.0077 Score=71.41 Aligned_cols=33 Identities=15% Similarity=0.283 Sum_probs=28.9
Q ss_pred hHHHHHHHhHHHHHHHHHhcCccccCcchhHhH
Q 003041 443 EQMAVREKAFSIITEVFKRHGAMALDTPVFEMR 475 (854)
Q Consensus 443 ~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~ 475 (854)
.-++++..+...+++.|..+||.+|.||.|...
T Consensus 169 Ai~RiRS~i~~aiR~ff~~~gFiEI~TP~Lt~s 201 (572)
T PLN02221 169 AVARIRNALAFATHSFFQEHSFLYIHTPIITTS 201 (572)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCeeccc
Confidence 346888999999999999999999999998654
No 125
>PLN02532 asparagine-tRNA synthetase
Probab=95.84 E-value=0.0081 Score=71.59 Aligned_cols=33 Identities=18% Similarity=0.332 Sum_probs=29.1
Q ss_pred hHHHHHHHhHHHHHHHHHhcCccccCcchhHhH
Q 003041 443 EQMAVREKAFSIITEVFKRHGAMALDTPVFEMR 475 (854)
Q Consensus 443 ~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~ 475 (854)
.-+++|..+...+++.|..+||.+|.||+|...
T Consensus 233 ailRiRS~i~~aiR~ff~~~GFiEV~TPiLT~s 265 (633)
T PLN02532 233 SVTRVRSALTHATHTFFQDHGFLYVQVPIITTT 265 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEeeCCeeccc
Confidence 456889999999999999999999999998543
No 126
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=95.63 E-value=0.0069 Score=68.80 Aligned_cols=113 Identities=18% Similarity=0.254 Sum_probs=70.8
Q ss_pred HHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhhhccCCceeeecccccchhhhhhhc-cccch
Q 003041 444 QMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMN-GLTSF 522 (854)
Q Consensus 444 ~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D~~G~~l~LRpDlT~~~aR~~a~~-~~~p~ 522 (854)
-++++..+...+++.|...||.+|.||.+-.... +...++|++. .-++..- ||.+ ...+..- -..--
T Consensus 133 v~kirs~i~~a~~eff~~~gF~eV~tP~i~~~~~------EGg~elF~v~-yf~~~a~----LtqS-~QLyke~~~~al~ 200 (435)
T COG0017 133 VFKIRSSILRAIREFFYENGFTEVHTPIITASAT------EGGGELFKVD-YFDKEAY----LTQS-PQLYKEALAAALE 200 (435)
T ss_pred HHhHHHHHHHHHHHHHHhCCcEEecCceEeccCC------CCCceeEEEe-ecCcceE----EecC-HHHHHHHHHHHhC
Confidence 4688888999999999999999999999865432 2223455542 1111110 1111 0001100 01145
Q ss_pred hhhhhhhhhcccCCCCc-cccccccccccccccccccCCChhhHHHHHHHhh
Q 003041 523 KRHQIAKVYRRDNPSKG-RYREFYQCDFDIAGQYERMGPDFEVVKILTELLN 573 (854)
Q Consensus 523 K~y~ig~VfR~e~p~~G-r~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~ 573 (854)
|.|+||++||-|++..- |.-||||.|+|+-... ..|++.++-+.++
T Consensus 201 rVf~igP~FRAE~s~T~RHL~EF~~ld~Emaf~~-----~~d~m~l~E~~i~ 247 (435)
T COG0017 201 RVFTIGPTFRAEKSNTRRHLSEFWMLDPEMAFAD-----LNDVMDLAEELIK 247 (435)
T ss_pred ceEEecCceecCCCCCcchhhhHheecceeccCc-----HHHHHHHHHHHHH
Confidence 99999999999987655 5889999999987652 2355555544443
No 127
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=95.35 E-value=0.014 Score=65.58 Aligned_cols=115 Identities=23% Similarity=0.401 Sum_probs=69.2
Q ss_pred HHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhhhccCCceeeecccccchhh--hhhhcc-cc
Q 003041 444 QMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFAR--YVAMNG-LT 520 (854)
Q Consensus 444 ~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D~~G~~l~LRpDlT~~~aR--~~a~~~-~~ 520 (854)
...+|.+|++.||+.|...||.||+||++..- .|..... .|+..... |-.|+.+-+|= |+.+-- --
T Consensus 224 ~f~~RakII~~iRkfld~rgFlEVETPmmn~i------aGGA~Ak--PFIT~hnd---ldm~LylRiAPEL~lK~LvVGG 292 (560)
T KOG1885|consen 224 RFRIRAKIISYIRKFLDSRGFLEVETPMMNMI------AGGATAK--PFITHHND---LDMDLYLRIAPELYLKMLVVGG 292 (560)
T ss_pred HHHHHHHHHHHHHHHhhhcCceEecchhhccc------cCccccC--ceeecccc---cCcceeeeechHHHHHHHHhcc
Confidence 45788889999999999999999999998531 2222111 23322211 23334333331 111100 11
Q ss_pred chhhhhhhhhhcccCCCCccccccccccccccccccccCCCh-hhHHHHHHHhhhc
Q 003041 521 SFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDF-EVVKILTELLNEL 575 (854)
Q Consensus 521 p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDa-EvI~l~~eil~~L 575 (854)
--|.|+||+.||+|--...+.=||+-|.|+.-- +|. .++.+.-++++.+
T Consensus 293 ldrVYEIGr~FRNEGIDlTHNPEFTTcEfY~AY------ady~dlm~~TE~l~s~m 342 (560)
T KOG1885|consen 293 LDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAY------ADYEDLMDMTEELLSGM 342 (560)
T ss_pred HHHHHHHHHHhhhcCcccccCCCcchHHHHHHH------hhHHHHHHHHHHHHHHH
Confidence 359999999999997666677789888875432 232 3445555555443
No 128
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=94.88 E-value=0.016 Score=59.90 Aligned_cols=125 Identities=20% Similarity=0.185 Sum_probs=81.9
Q ss_pred HHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhhhc-cCCceeeecccccchhhhhhhc---cccchhh
Q 003041 449 EKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQ-GGELCSLRYDLTVPFARYVAMN---GLTSFKR 524 (854)
Q Consensus 449 ~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D~-~G~~l~LRpDlT~~~aR~~a~~---~~~p~K~ 524 (854)
+.+++.+++.+...||.|+.|..|...+.+.. .+...+..+++.++ +.+.=+||+.+.+++.+.++.| +..++|+
T Consensus 3 ~~~~~~ir~~L~~~G~~E~~tys~~~~~~~~~-~~~~~~~~i~l~NPis~e~~~lR~sLlp~LL~~~~~N~~~~~~~~~l 81 (198)
T cd00769 3 QKLERKLRRLLAGLGFQEVITYSLTSPEEAEL-FDGGLDEAVELSNPLSEEYSVLRTSLLPGLLDALARNLNRKNKPLRL 81 (198)
T ss_pred hHHHHHHHHHHHHCCCceeecccCCCHHHHHh-ccCCCCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHhcCCCCCEeE
Confidence 45566789999999999999999876643322 22122234666666 5566689999999999999875 3468999
Q ss_pred hhhhhhhcccCCCCccccccccccccccccccc-------cCCCh-hhHHHHHHHhhhcCC
Q 003041 525 HQIAKVYRRDNPSKGRYREFYQCDFDIAGQYER-------MGPDF-EVVKILTELLNELDI 577 (854)
Q Consensus 525 y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~-------~~aDa-EvI~l~~eil~~Lgl 577 (854)
|++|+||..+.. .++|..-..+-+.|.... -..|. ++-.++..+++.+|+
T Consensus 82 FEiG~vf~~~~~---~~~e~~~l~~~~~g~~~~~~w~~~~~~~~f~~~Kg~ve~ll~~l~~ 139 (198)
T cd00769 82 FEIGRVFLKDED---GPEEEEHLAALLSGNREPESWQGKGRPVDFYDAKGILEALLRALGI 139 (198)
T ss_pred EEeEeEEecCCC---CCcchheEEEEEECCCccccccCCCCccCHhhHHHHHHHHHHHcCC
Confidence 999999965421 234555555555553210 01243 344566667777775
No 129
>PLN02788 phenylalanine-tRNA synthetase
Probab=94.01 E-value=0.079 Score=60.24 Aligned_cols=99 Identities=17% Similarity=0.164 Sum_probs=68.8
Q ss_pred HHhHHHHHHHHHhc---CccccC--cchhHhHHhhhh------ccCCCchhhhhhhhccCCceeeecccccchhhhhhhc
Q 003041 449 EKAFSIITEVFKRH---GAMALD--TPVFEMRETLMG------KYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMN 517 (854)
Q Consensus 449 ~~i~~~l~~if~~~---G~~eI~--tP~le~~e~~~~------~~g~~~k~~y~~~D~~G~~l~LRpDlT~~~aR~~a~~ 517 (854)
..+.+.|+++|... ||.+++ .|+......|.. +-+.+....|-+ + ...+||.-.|+.-+|++.++
T Consensus 71 ~~~~~~i~~~f~~~~~~gf~~~~~~~~iv~~~~NFD~L~~P~dHPaR~~~DTfy~-~---~~~lLRTHTSa~q~~~l~~~ 146 (402)
T PLN02788 71 GILKNAIYDYFDENYSNKFKKFDDLSPIVSTKQNFDDVLVPPDHVSRSYNDTYYV-D---AQTVLRCHTSAHQAELLRAG 146 (402)
T ss_pred HHHHHHHHHHHhhcccCCcEEecCCCCccchhhhhhhhCCCCCCCccCccceEEe-c---CCccccCCCcHHHHHHHHhC
Confidence 44556678888776 899988 565443332211 111112334544 2 34789999999999999864
Q ss_pred cccchhhhhhhhhhcccCCCCcccccccccccccccc
Q 003041 518 GLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQ 554 (854)
Q Consensus 518 ~~~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~ 554 (854)
. .|++..|+|||+|....-|+-+|+|.+.=++..
T Consensus 147 ~---~~~~~~g~VyRrD~iD~tH~p~FhQ~EG~~v~~ 180 (402)
T PLN02788 147 H---THFLVTGDVYRRDSIDATHYPVFHQMEGVRVFS 180 (402)
T ss_pred C---CcEEEEeeEeecCCCCcccCccceeEEEEEEec
Confidence 3 388999999999988888999999999877763
No 130
>PRK07080 hypothetical protein; Validated
Probab=92.26 E-value=0.41 Score=52.41 Aligned_cols=154 Identities=18% Similarity=0.213 Sum_probs=99.7
Q ss_pred CCccchhhHHhHHHHHHHhHHHHHHHHHhcC----ccccCcchhHhHHhhhhccCC--C---------------ch--hh
Q 003041 433 LPKGTRDFAKEQMAVREKAFSIITEVFKRHG----AMALDTPVFEMRETLMGKYGE--D---------------SK--LI 489 (854)
Q Consensus 433 ~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G----~~eI~tP~le~~e~~~~~~g~--~---------------~k--~~ 489 (854)
.|.|..-.+.. ....+.+.+.+..++.++| +.++.-|-+.+.+.|.+ ++- + .+ ++
T Consensus 32 ~~~g~~g~ygr-s~~fe~v~~~ld~~i~~lg~~~~~e~~~FPpl~~~~~~ek-~~Y~ksFP~l~~~V~~~~g~~~e~~~l 109 (317)
T PRK07080 32 IPTGVDGLYGR-SGLFEDVVEALDALITRLGADQGAEVLRFPPVMSRAEFER-SGYLKSFPQLAGTVHSFCGNEAEHRRL 109 (317)
T ss_pred eccCCCccccc-cHHHHHHHHHHHHHHHHhccccCCceeeCCCCCCHHHHHh-cChhhhCcccceeecCCCCCCHHHHHH
Confidence 34444444432 3445666667777777777 99999999999887754 221 1 01 12
Q ss_pred hhhhh--------ccCCceeeecccccchhhhhhhccccc--hhhhh-hhhhhcccCCC-Cccccccccccccccccccc
Q 003041 490 YDLAD--------QGGELCSLRYDLTVPFARYVAMNGLTS--FKRHQ-IAKVYRRDNPS-KGRYREFYQCDFDIAGQYER 557 (854)
Q Consensus 490 y~~~D--------~~G~~l~LRpDlT~~~aR~~a~~~~~p--~K~y~-ig~VfR~e~p~-~Gr~REf~Q~d~eiig~~~~ 557 (854)
+.=.+ ..-..++|.|-.|.|+-=.++..+..| -++|. .|.+||+|... .-|..+|.|-.+=.+|+++.
T Consensus 110 l~~~~~~~~~~~~l~~~~~vL~pAaCyP~Yp~l~~~g~lp~~g~~~dv~g~CFR~E~s~dl~Rl~~F~mrE~V~iGt~e~ 189 (317)
T PRK07080 110 LACLDRGEDWTESQKPTDVVLTPAACYPVYPVLARRGALPADGRLVDVASYCFRHEPSLDPARMQLFRMREYVRIGTPEQ 189 (317)
T ss_pred HHHHHhcCchhhhcCCCcceecccccccchhhhccCcccCCCCcEEEeeeeeeccCCCCCcHHHhheeeeEEEEecCHHH
Confidence 21111 133468899999999977777554333 36665 58999998642 34889999999999998653
Q ss_pred cCCCh--hhHHHHHHHhhhcCCCcceeeechhhhh
Q 003041 558 MGPDF--EVVKILTELLNELDIGDYEIKLNHRLLL 590 (854)
Q Consensus 558 ~~aDa--EvI~l~~eil~~Lgl~~~~i~Lnh~~ll 590 (854)
. .+. .-+....++.+.||+ ++.+.+.+=.++
T Consensus 190 v-~~~r~~w~e~~~~l~~~LgL-~~~ve~AnDPFF 222 (317)
T PRK07080 190 I-VAFRQSWIERGTAMADALGL-PVEIDLANDPFF 222 (317)
T ss_pred H-HHHHHHHHHHHHHHHHHhCC-ceeEeecCCccc
Confidence 2 121 236677788888998 477777665443
No 131
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=91.21 E-value=0.093 Score=58.28 Aligned_cols=109 Identities=14% Similarity=0.166 Sum_probs=68.3
Q ss_pred hhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhhhc---cCCceeeecc-cccchhhhh
Q 003041 439 DFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQ---GGELCSLRYD-LTVPFARYV 514 (854)
Q Consensus 439 D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D~---~G~~l~LRpD-lT~~~aR~~ 514 (854)
++....+++|..+.....+.|..|+|..|.||++...|- ... .+||++... ++.-+ =||. +|++=--.+
T Consensus 126 ~~~~av~RvRs~~~~a~h~ffq~~~F~~i~tPiiTt~DC--EGa----GE~F~vtt~~d~~~~fF-g~p~fLTVSgQLhl 198 (446)
T KOG0554|consen 126 AKVGAVLRVRSALAFATHSFFQSHDFTYINTPIITTNDC--EGA----GEVFQVTTLTDYSKDFF-GRPAFLTVSGQLHL 198 (446)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCceEecCcEeeccCC--CCC----cceEEEEecCccccccc-CCceEEEEeceehH
Confidence 345677899999999999999999999999999865431 112 235554321 11111 1111 122110000
Q ss_pred hhccccchhhhhhhhhhcccCCCCc-ccccccccccccccc
Q 003041 515 AMNGLTSFKRHQIAKVYRRDNPSKG-RYREFYQCDFDIAGQ 554 (854)
Q Consensus 515 a~~~~~p~K~y~ig~VfR~e~p~~G-r~REf~Q~d~eiig~ 554 (854)
-.+-..--|.|.+|+.||.|+.+.- +.-|||+...|+--.
T Consensus 199 E~~a~~LsrvyTfgP~FRAEnS~tsRHLAEFwMlEaE~AF~ 239 (446)
T KOG0554|consen 199 EAMACALSRVYTFGPTFRAENSHTSRHLAEFWMLEAELAFA 239 (446)
T ss_pred HHHHhhhcceEeeccceecccCCchhHHhhhhhhhhHHHHH
Confidence 0011123589999999999988754 568999999997654
No 132
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=90.95 E-value=0.22 Score=59.64 Aligned_cols=127 Identities=20% Similarity=0.187 Sum_probs=82.0
Q ss_pred HHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhhhc-cCCceeeecccccchhhhhhhc--cccchhh
Q 003041 448 REKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQ-GGELCSLRYDLTVPFARYVAMN--GLTSFKR 524 (854)
Q Consensus 448 ~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D~-~G~~l~LRpDlT~~~aR~~a~~--~~~p~K~ 524 (854)
.+.+.+.+++.+...||.|+.|-.|...+.+....+-..+..+++.++ +.+.=.||+.+.+++.+.++.| +..++|+
T Consensus 364 ~~~~~~~ir~~L~~~Gf~E~itysf~s~~~~~~~~~~~~~~~v~l~NPis~e~s~lR~SLlp~LL~~~~~N~~~~~~~~l 443 (551)
T TIGR00471 364 LNKVSDIIREIMVGLGFQEVIPLTLTSEEVNFKRMRIEDNNDVKVANPKTLEYTIVRTSLLPGLLETLSENKHHELPQKI 443 (551)
T ss_pred HHHHHHHHHHHHHhCCceeeccceEccHHHHHHHhccCCCCcEEeCCCCchhhhHhHhhhHHHHHHHHHhcccCCCCeeE
Confidence 356667789999999999999988876643211122211124556665 4556689999999999999876 3557899
Q ss_pred hhhhhhhcccCCCCccccccccccccccccccccCCCh-hhHHHHHHHhhhcCCC
Q 003041 525 HQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDF-EVVKILTELLNELDIG 578 (854)
Q Consensus 525 y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDa-EvI~l~~eil~~Lgl~ 578 (854)
|++|+||..+....-+-+++....+-+.|. ..|. ++-.++..++..||++
T Consensus 444 FEiG~Vf~~~~~~~~~e~~~~~l~~~~~g~----~~df~d~Kg~ve~ll~~l~i~ 494 (551)
T TIGR00471 444 FEIGDVVVKDDKSETRSRVVTKLAVGITHS----EANFNEIKSIVAALARELGIE 494 (551)
T ss_pred EEEEEEEEcCCccccccceeeEEEEEEECC----CCCHHHHHHHHHHHHHHcCCc
Confidence 999999954211100222334555544443 2354 4555777777888764
No 133
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=90.57 E-value=0.26 Score=54.27 Aligned_cols=84 Identities=12% Similarity=0.171 Sum_probs=56.2
Q ss_pred Cceeeecccccchhhh---hhhccccchhhhhhhhhhcccCC-CCccccccccccccccccccccCCChhhHHHHHHHhh
Q 003041 498 ELCSLRYDLTVPFARY---VAMNGLTSFKRHQIAKVYRRDNP-SKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLN 573 (854)
Q Consensus 498 ~~l~LRpDlT~~~aR~---~a~~~~~p~K~y~ig~VfR~e~p-~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~ 573 (854)
..+.||..||.+..=. +..+...|+|+|.|.+|||+|+. ...|.-.++-+.+-+++..=+ ..+- -.++--+|+
T Consensus 181 ~tlTLRSHMTsGWFItLs~i~~r~~~PlklFSIDRCFRREQ~ED~shLmtYhSASCVvvde~vt-vD~G--KaVAEglL~ 257 (536)
T COG2024 181 STLTLRSHMTSGWFITLSEILKREDPPLKLFSIDRCFRREQREDASHLMTYHSASCVVVDEDVT-VDDG--KAVAEGLLR 257 (536)
T ss_pred CceehhhhcccceeeeHHHHHhccCCCceeeehhHHhhhhhhcchhhhhhhccceEEEEcCccc-cccc--HHHHHHHHH
Confidence 3467777777775322 22345679999999999999864 345777788888777775211 1111 235666788
Q ss_pred hcCCCcceeee
Q 003041 574 ELDIGDYEIKL 584 (854)
Q Consensus 574 ~Lgl~~~~i~L 584 (854)
.||.++|.++=
T Consensus 258 qfGFe~F~Frp 268 (536)
T COG2024 258 QFGFEKFRFRP 268 (536)
T ss_pred HhCccceeecc
Confidence 89998888763
No 134
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=88.97 E-value=0.38 Score=56.00 Aligned_cols=83 Identities=13% Similarity=0.193 Sum_probs=50.9
Q ss_pred CCceeeecccccchhhhhhhc---cccchhhhhhhhhhcccCC-CCccccccccccccccccccccCCCh-hhHHHHHHH
Q 003041 497 GELCSLRYDLTVPFARYVAMN---GLTSFKRHQIAKVYRRDNP-SKGRYREFYQCDFDIAGQYERMGPDF-EVVKILTEL 571 (854)
Q Consensus 497 G~~l~LRpDlT~~~aR~~a~~---~~~p~K~y~ig~VfR~e~p-~~Gr~REf~Q~d~eiig~~~~~~aDa-EvI~l~~ei 571 (854)
...-+||+.+++++...++.| +..|+|+|++|+|||.+.. ...+...+.+. ..+.... ..+. ++-.++..+
T Consensus 181 ~~~svLRtSLlPGLL~tLs~Nl~Rg~~piRLFEIGRVFr~d~~eE~t~La~llsG--s~W~~~e--~vDFfDlKGiLE~L 256 (529)
T PRK06253 181 SSRLTLRSHMTSGWFITLSSLLEKRPLPIKLFSIDRCFRREQREDASRLMTYHSA--SCVIADE--DVTVDDGKAVAEGL 256 (529)
T ss_pred cccCccccchHHHHHHHHHHHHhCCCCCEEEEEEeeEEecCCccchhheeEEEEc--cccccCC--CCCHHHHHHHHHHH
Confidence 445579999999988877754 5679999999999986431 11122223222 1111111 1243 566678888
Q ss_pred hhhcCCCcceee
Q 003041 572 LNELDIGDYEIK 583 (854)
Q Consensus 572 l~~Lgl~~~~i~ 583 (854)
++.||++++.+.
T Consensus 257 L~~LGI~~i~f~ 268 (529)
T PRK06253 257 LSQFGFTKFKFR 268 (529)
T ss_pred HHHcCCCeEEEe
Confidence 888887544443
No 135
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=87.35 E-value=0.3 Score=54.35 Aligned_cols=112 Identities=16% Similarity=0.201 Sum_probs=63.0
Q ss_pred HHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhhhccCC-ceeeecccccchhhhhhhccccchhh
Q 003041 446 AVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGE-LCSLRYDLTVPFARYVAMNGLTSFKR 524 (854)
Q Consensus 446 ~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D~~G~-~l~LRpDlT~~~aR~~a~~~~~p~K~ 524 (854)
++..-+...+++.++..||.||.||-+.-.. .+...++|++.=-.+. -++=.|-+--+. +- -...-|.
T Consensus 229 riq~gvc~~FRe~L~~kgF~EIhTpKli~as------SEGGanvF~v~Yfk~~A~LAQSPQLyKQM----aI-~gdf~rV 297 (533)
T KOG0556|consen 229 RIQAGVCFAFREYLRSKGFVEIHTPKLIGAS------SEGGANVFRVSYFKQKAYLAQSPQLYKQM----AI-CGDFERV 297 (533)
T ss_pred ehHHHHHHHHHHHHHhcCcceeccccccccc------CCCCceeEEEEeccCcchhhcChHHHHHH----HH-hcchhhe
Confidence 3445566778999999999999999875432 2333446654211111 111122211111 00 0123589
Q ss_pred hhhhhhhcccCCCC-ccccccccccccccccccccCCChhhHHHHHHHh
Q 003041 525 HQIAKVYRRDNPSK-GRYREFYQCDFDIAGQYERMGPDFEVVKILTELL 572 (854)
Q Consensus 525 y~ig~VfR~e~p~~-Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil 572 (854)
|+||+|||.|.... -+.-||.-.|+|.-=.. ..-||+..+.+.|
T Consensus 298 yeIGpVfRAEdSnthRhltEFvGLD~EMaf~~----hYhEVm~~i~~lf 342 (533)
T KOG0556|consen 298 YEIGPVFRAEDSNTHRHLTEFVGLDLEMAFNE----HYHEVMDTIGELF 342 (533)
T ss_pred eeecceeeccccchhhhhHHhhCcchhhHHHH----HHHHHHHHHHHHH
Confidence 99999999986643 35678888887754321 1246665555544
No 136
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=85.69 E-value=0.62 Score=56.30 Aligned_cols=125 Identities=12% Similarity=0.119 Sum_probs=82.5
Q ss_pred HHHhHHHHHHHHHhcCccccCcchhHhHHh-hhhccCCCc--hhhhhhhhc-cCCceeeecccccchhhhhhhcc--ccc
Q 003041 448 REKAFSIITEVFKRHGAMALDTPVFEMRET-LMGKYGEDS--KLIYDLADQ-GGELCSLRYDLTVPFARYVAMNG--LTS 521 (854)
Q Consensus 448 ~~~i~~~l~~if~~~G~~eI~tP~le~~e~-~~~~~g~~~--k~~y~~~D~-~G~~l~LRpDlT~~~aR~~a~~~--~~p 521 (854)
.+++.+.+++.+...||+|+.|-.|...+. +.. .+... +..+++.++ +.+.=+||+.+.+++...++.|. ..|
T Consensus 399 ~~~~~~~iR~~l~~~Gf~Ev~t~sl~s~~~~~~~-~~~~~~~~~~v~I~NP~s~e~~vlRtSLlPgLL~~l~~N~~~~~p 477 (597)
T PLN02265 399 LNQFSDLLRAEVAMAGFTEVLTWILCSHKENFAM-LNREDDGNSAVIIGNPRSADFEVVRTSLLPGLLKTLGHNKDAPKP 477 (597)
T ss_pred HHHHHHHHHHHHHHCCceeeeceeeCChHHHHHh-hcCCccCCceEEECCCcchhHHHHHHhhHHHHHHHHHHhhcCCCC
Confidence 466677789999999999999988876543 322 22111 134556655 44556799999999999998763 449
Q ss_pred hhhhhhhhhhcccCCCCccc-cccccccccccccccccCCChh-hHHHHHHHhhhcCCC
Q 003041 522 FKRHQIAKVYRRDNPSKGRY-REFYQCDFDIAGQYERMGPDFE-VVKILTELLNELDIG 578 (854)
Q Consensus 522 ~K~y~ig~VfR~e~p~~Gr~-REf~Q~d~eiig~~~~~~aDaE-vI~l~~eil~~Lgl~ 578 (854)
+|+|++|+||-.+.. .... ||..-.++=+.|. .++.+ +-.++..++..||+.
T Consensus 478 ~klFEiG~V~~~~~~-~~~~~~e~~~la~~~~g~----~~~f~~ikg~le~ll~~l~i~ 531 (597)
T PLN02265 478 IKLFEVSDVVLLDES-KDVGARNSRRLAALYCGT----TSGFEVIHGLVDRIMEVLGIP 531 (597)
T ss_pred eeEEEeEeEEecCCc-ccCCcchhhEEEEEEECC----CCCHhhHHHHHHHHHHHcCCc
Confidence 999999999954321 1111 4554455545553 13554 445777888888874
No 137
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=84.57 E-value=0.95 Score=52.21 Aligned_cols=100 Identities=23% Similarity=0.172 Sum_probs=65.5
Q ss_pred HhHHHHHHHHHhc--------CccccCc--chhHhHHhhhh------ccCCCchhhhhhhhccCCceeeecccccchhhh
Q 003041 450 KAFSIITEVFKRH--------GAMALDT--PVFEMRETLMG------KYGEDSKLIYDLADQGGELCSLRYDLTVPFARY 513 (854)
Q Consensus 450 ~i~~~l~~if~~~--------G~~eI~t--P~le~~e~~~~------~~g~~~k~~y~~~D~~G~~l~LRpDlT~~~aR~ 513 (854)
.+.+.|.++|.+. ||..++. |+..-...|.. +-+.+....|-+ + +..+||.-.++.-.|.
T Consensus 46 ~~~~~I~~~F~~~~~~~~~~~gf~v~~~~~Pvvt~~~NFD~Ln~P~dHPaR~~~DT~Yi-~---~~~lLRTHTSa~q~~~ 121 (460)
T TIGR00469 46 IIRDLIEKKFNGADNNQRGNPLFKIFDNFKPVVTTMENFDNLGFPADHPGRQKSDCYYI-N---EQHLLRAHTSAHELEC 121 (460)
T ss_pred HHHHHHHHHHHhhhcccccCCCeEEeeCCCCccchhhhhhhcCCCCCCcccCcccceEe-c---CCceeCCCCcHHHHHH
Confidence 3445567777766 7877766 74433333321 111112334544 2 3478999998888998
Q ss_pred hhhccc--cchh--hhhhhhhhcccCCCCccccccccccccccc
Q 003041 514 VAMNGL--TSFK--RHQIAKVYRRDNPSKGRYREFYQCDFDIAG 553 (854)
Q Consensus 514 ~a~~~~--~p~K--~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig 553 (854)
+.++.. .|.| +...|.|||++....-++-.|+|.+.=.+.
T Consensus 122 ~~~~~~~~~~~~~~~i~~G~VYRrD~iDatH~p~FHQ~EG~~v~ 165 (460)
T TIGR00469 122 FQGGLDDSDNIKSGFLISADVYRRDEIDKTHYPVFHQADGAAIR 165 (460)
T ss_pred HHhccccCCCcceeeEeecceeeCCCCccccCccceeeEEEEEe
Confidence 876542 5777 778899999998778889999999944444
No 138
>PF00221 Lyase_aromatic: Aromatic amino acid lyase; InterPro: IPR001106 This entry represents phenylalanine ammonia-lyase (PAL; 4.3.1.24 from EC) and the mechanistically related protein histidine ammonia lyase (HAL; 4.3.1.3 from EC). Both contain a catalytic Ala-Ser-Gly triad that is post-translationally cyclised []. PAL is a key biosynthetic catalyst in phenylpropanoid assembly in plants and fungi, and is involved in the biosynthesis of a wide variety of secondary metabolites such as flavanoids, furanocoumarin phytoalexins and cell wall components. These compounds are important for normal growth and in responses to environmental stress. HAL catalyses the first step in histidine degradation, the removal of an ammonia group from histidine to produce urocanic acid. The core domain in PAL and Hal share about 30% sequence identity, with PAL containing an additional approximately 160 residues extending from the common fold [].; GO: 0016841 ammonia-lyase activity, 0009058 biosynthetic process; PDB: 2RJR_A 2RJS_A 2OHY_B 3KDZ_B 2QVE_A 3KDY_A 2NYF_A 2YII_B 1Y2M_B 1T6P_B ....
Probab=82.07 E-value=0.51 Score=55.21 Aligned_cols=75 Identities=23% Similarity=0.300 Sum_probs=51.2
Q ss_pred EEecCCCCCCCccceeeeecCceeEEecchhhhhhhcCCCC-----CCCCCcceeeccCCc----ccchhhhHHHHHHHH
Q 003041 10 ITVGGKGSSLNSSSVYAISNGLAQVRVDSSALDRLSSTLPN-----QNPPPVTKFQIPIPK----TLTLEESRAFLTVLL 80 (854)
Q Consensus 10 v~l~g~g~~lt~~~vygi~tG~a~~~i~~~~~~~lq~~~~~-----~~~~~~~~~h~gvg~----~l~~~~vRa~m~~rl 80 (854)
|+|||+ +||+++|+.|+.+.++|.|+|+.+++++++... +...|.|..+.|+|. .+++++......--+
T Consensus 1 i~l~g~--~Lti~~v~~va~~~~~v~l~~~a~~ri~~sr~~l~~~~~~~~~iYGvnTG~G~~~~~~i~~~~~~~~q~nll 78 (473)
T PF00221_consen 1 IVLDGE--SLTIDDVVAVARGGAKVELSPEARERIEASRAFLEDILASGKPIYGVNTGFGALKDVRIPPEELAELQRNLL 78 (473)
T ss_dssp EEESSS--S--HHHHHHHHHSTSEEEE-HHHHHHHHHHHHHHHHHHHTTCTCTTTSBSSGGGTTSBC-GHHHHHHHHHHH
T ss_pred CeeCCC--CCCHHHHHHHHcCCCcEEECHHHHHHHHHHHHHHHHHHhcCCceeccccCCccccCCcCCHHHHHHHHHHHH
Confidence 789996 999999999999889999999999999888641 222456777888887 455666666555444
Q ss_pred HHHhcC
Q 003041 81 NKLLLG 86 (854)
Q Consensus 81 n~l~~G 86 (854)
-+.+.|
T Consensus 79 ~~h~~g 84 (473)
T PF00221_consen 79 RSHAAG 84 (473)
T ss_dssp HHH---
T ss_pred Hhhccc
Confidence 444444
No 139
>TIGR01225 hutH histidine ammonia-lyase. This enzyme deaminates histidine to urocanic acid, the first step in histidine degradation. It is closely related to phenylalanine ammonia-lyase.
Probab=81.01 E-value=0.74 Score=54.19 Aligned_cols=75 Identities=19% Similarity=0.220 Sum_probs=55.9
Q ss_pred EEecCCCCCCCccceeeeecCceeEEecchhhhhhhcCCCC-----CCCCCcceeeccCCcc----cchhhhHHHHHHHH
Q 003041 10 ITVGGKGSSLNSSSVYAISNGLAQVRVDSSALDRLSSTLPN-----QNPPPVTKFQIPIPKT----LTLEESRAFLTVLL 80 (854)
Q Consensus 10 v~l~g~g~~lt~~~vygi~tG~a~~~i~~~~~~~lq~~~~~-----~~~~~~~~~h~gvg~~----l~~~~vRa~m~~rl 80 (854)
|+|||+ +||+++|+.|+.|.++|.++++.+++++++... +...+.|..+.|+|.. ++++..+....--+
T Consensus 1 v~l~g~--~Lt~~~v~~va~~~~~v~ls~~a~~~i~~s~~~l~~~~~~g~~iYGvnTGfG~~~d~~i~~~~~~~lq~nLi 78 (506)
T TIGR01225 1 VTLDGG--SLTLEDVVAVARHGARVSLSAAAREAVAKSRAAIEQIIAGDETVYGINTGFGKLASTRIDSEDLAELQRNLV 78 (506)
T ss_pred CEeCCC--CCCHHHHHHHHhCCCceeeCHHHHHHHHHHHHHHHHHHhcCCceeeecCCCCCccCcccCHHHHHHHHHHHH
Confidence 578986 999999999999889999999999999988641 3334567778898884 56666655554444
Q ss_pred HHHhcC
Q 003041 81 NKLLLG 86 (854)
Q Consensus 81 n~l~~G 86 (854)
-+.+.|
T Consensus 79 ~sha~G 84 (506)
T TIGR01225 79 RSHAAG 84 (506)
T ss_pred HHHhcC
Confidence 455444
No 140
>PRK09367 histidine ammonia-lyase; Provisional
Probab=76.92 E-value=1.4 Score=52.00 Aligned_cols=78 Identities=19% Similarity=0.171 Sum_probs=56.4
Q ss_pred EEEecCCCCCCCccceeeeecCceeEEecchhhhhhhcCCCC-----CCCCCcceeeccCCcc----cchhhhHHHHHHH
Q 003041 9 VITVGGKGSSLNSSSVYAISNGLAQVRVDSSALDRLSSTLPN-----QNPPPVTKFQIPIPKT----LTLEESRAFLTVL 79 (854)
Q Consensus 9 ~v~l~g~g~~lt~~~vygi~tG~a~~~i~~~~~~~lq~~~~~-----~~~~~~~~~h~gvg~~----l~~~~vRa~m~~r 79 (854)
.|+|||+ +||+++|+.|+.|.++|.++++.+++++++... ++..|.|..+.|+|.. ++++.......--
T Consensus 3 ~v~l~g~--~Lt~~~v~~va~~~~~v~ls~~~~~ri~~sr~~l~~~~~~~~~iYGvnTG~G~~~~~~i~~~~~~~lq~nL 80 (500)
T PRK09367 3 TITLTPG--TLTLEDLRAVAREGAKVELDPSARAAIAASRAVVERIVAEGRPVYGINTGFGKLASVRIAPEDLEQLQRNL 80 (500)
T ss_pred eEEECCC--CCCHHHHHHHHhCCCceeeCHHHHHHHHHHHHHHHHHHhcCCcccccccCCccccCcccCHHHHHHHHHHH
Confidence 5899996 999999999999889999999999999988641 2335567778888885 4455544444333
Q ss_pred HHHHhcCCCc
Q 003041 80 LNKLLLGSSI 89 (854)
Q Consensus 80 ln~l~~G~SG 89 (854)
+-+.+.| .|
T Consensus 81 i~sha~G-vG 89 (500)
T PRK09367 81 VLSHAAG-VG 89 (500)
T ss_pred HHHHHcC-CC
Confidence 4444444 45
No 141
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=72.00 E-value=3.1 Score=52.26 Aligned_cols=122 Identities=19% Similarity=0.215 Sum_probs=76.3
Q ss_pred HHHHHHHHhcCccccCcchhHhHHhhhhccCCCch-hhhhhhhc-cCCceeeecccccchhhhhhhc---cccchhhhhh
Q 003041 453 SIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSK-LIYDLADQ-GGELCSLRYDLTVPFARYVAMN---GLTSFKRHQI 527 (854)
Q Consensus 453 ~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k-~~y~~~D~-~G~~l~LRpDlT~~~aR~~a~~---~~~p~K~y~i 527 (854)
..+++.+..+||.|+.|-.|...+.+.. .+...+ ..+++.++ +-+.=.||+.+.+++.+.++.| +..++|+|++
T Consensus 498 ~~~r~~L~~~Gf~Ev~tysl~s~~~~~~-~~~~~~~~~i~l~NPis~e~s~lR~SLlpgLL~~~~~N~~~~~~~~~lFEi 576 (798)
T TIGR00472 498 RKLRTLLVGLGLNEVITYSLVSSEKAEK-FNFPKLENLVEIKNPLSNERSVLRTSLLPSLLEVLAYNQNRKNKDVKIFEI 576 (798)
T ss_pred HHHHHHHHHCCCcEEeccccCCHHHHHh-hcCCCCCceEEEeCCCchHHHHHHHhhHHHHHHHHHHHHhCCCCCEeEEee
Confidence 4678999999999999998876643321 322211 13555555 3345579999999999998875 3567999999
Q ss_pred hhhhcccCCCCcccccccccccccccccc-------ccCCCh-hhHHHHHHHhhhcCCC
Q 003041 528 AKVYRRDNPSKGRYREFYQCDFDIAGQYE-------RMGPDF-EVVKILTELLNELDIG 578 (854)
Q Consensus 528 g~VfR~e~p~~Gr~REf~Q~d~eiig~~~-------~~~aDa-EvI~l~~eil~~Lgl~ 578 (854)
|.||..+.. . ++|.....+=+.|... ....|. ++-.++..++..+++.
T Consensus 577 G~V~~~~~~--~-~~e~~~La~~~~g~~~~~~~~~~~~~~df~d~Kg~le~ll~~l~~~ 632 (798)
T TIGR00472 577 GKVFAKDGL--G-VKEQLRLAILISGEKNPSSWNHKEEKVDFYDLKGDVESLLELLGLS 632 (798)
T ss_pred ecccCCCCC--C-cchhhEEEEEEECCCCcccccCCCCcCChHHHHHHHHHHHHHcCCC
Confidence 999953221 1 4455555544444310 001243 3445666666767663
No 142
>TIGR03832 Tyr_2_3_mutase tyrosine 2,3-aminomutase. Members of this protein family are tyrosine 2,3-aminomutase. It is variable from member to member as to whether the (R)-beta-Tyr or (S)-beta-Tyr is the preferred product from L-Tyr. This enzyme tends to occur in secondary metabolite biosynthesis systems, as in the production of chondramides in Chondromyces crocatus.
Probab=66.27 E-value=2.7 Score=49.63 Aligned_cols=73 Identities=16% Similarity=0.228 Sum_probs=52.1
Q ss_pred ecCCCCCCCccceeeeecCceeEEecchhhhhhhcCCCC-----CCCCCcceeeccCCcc----cchhhhHHHHHHHHHH
Q 003041 12 VGGKGSSLNSSSVYAISNGLAQVRVDSSALDRLSSTLPN-----QNPPPVTKFQIPIPKT----LTLEESRAFLTVLLNK 82 (854)
Q Consensus 12 l~g~g~~lt~~~vygi~tG~a~~~i~~~~~~~lq~~~~~-----~~~~~~~~~h~gvg~~----l~~~~vRa~m~~rln~ 82 (854)
|||+ +||+++|+.|+.|.++|.++++.+++++++... ....|.|..+.|+|.. ++++.......--+-+
T Consensus 1 l~g~--~Lt~~dv~~va~~~~~v~ls~~a~~ri~~sr~~l~~~~~~g~~iYGvnTGfG~~~d~~i~~~~~~~lQ~nLi~s 78 (507)
T TIGR03832 1 IDGE--TLTVDAVRRVAEQRAPCRVPAESLAKAAKSRAIFEGIAEQNVPIYGVTTGYGEMIYMLVDKEHEVELQTNLVRS 78 (507)
T ss_pred CCCC--CCCHHHHHHHHhCCCCeeeCHHHHHHHHHHHHHHHHHHhcCCceeeecCCCCCccCccCCHHHHHHHHHHHHHH
Confidence 4564 999999999999889999999999999988641 2335677778899984 4555555444433444
Q ss_pred HhcC
Q 003041 83 LLLG 86 (854)
Q Consensus 83 l~~G 86 (854)
.+.|
T Consensus 79 ha~G 82 (507)
T TIGR03832 79 HSAG 82 (507)
T ss_pred HhcC
Confidence 4444
No 143
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=61.09 E-value=3 Score=52.29 Aligned_cols=84 Identities=19% Similarity=0.186 Sum_probs=60.8
Q ss_pred HHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhhhc-cCCceeeecccccchhhhhhhc---cccchh
Q 003041 448 REKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQ-GGELCSLRYDLTVPFARYVAMN---GLTSFK 523 (854)
Q Consensus 448 ~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D~-~G~~l~LRpDlT~~~aR~~a~~---~~~p~K 523 (854)
.+...+++++.+...||.|+.|-.|...+.... .+... ..+++.++ +.+.=.||+.+.+++.+.+..| +..++|
T Consensus 489 ~~~~~~~ir~~L~~~Gf~Ev~tysf~~~~~~~~-~~~~~-~~i~l~NPis~e~~~lR~SLlp~LL~~~~~N~~~~~~~i~ 566 (791)
T PRK00629 489 AQRLLRRLRRALAALGYQEVITYSFVSPEDAKL-FGLNP-EPLLLLNPISEELSVMRTSLLPGLLEAVAYNLNRGNKDVA 566 (791)
T ss_pred HHHHHHHHHHHHHHCCCcEEeccccCCHHHHHh-cCCCC-CeEEEeCCCchHHHHHHHhhHHHHHHHHHHHHhCCCCCEe
Confidence 355566789999999999999988876643321 33211 23445555 4455679999999999998875 356899
Q ss_pred hhhhhhhhcc
Q 003041 524 RHQIAKVYRR 533 (854)
Q Consensus 524 ~y~ig~VfR~ 533 (854)
+|++|+||..
T Consensus 567 lFEiG~Vf~~ 576 (791)
T PRK00629 567 LFEIGRVFLP 576 (791)
T ss_pred EEeeeeeeCC
Confidence 9999999964
No 144
>COG2986 HutH Histidine ammonia-lyase [Amino acid transport and metabolism]
Probab=54.84 E-value=5.5 Score=45.96 Aligned_cols=80 Identities=24% Similarity=0.249 Sum_probs=58.0
Q ss_pred eEEEecCCCCCCCccceeeeecCceeEEecchhhhhhhcCCCC-----CCCCCcceeeccCCcccchhhhHHHHHHHHHH
Q 003041 8 AVITVGGKGSSLNSSSVYAISNGLAQVRVDSSALDRLSSTLPN-----QNPPPVTKFQIPIPKTLTLEESRAFLTVLLNK 82 (854)
Q Consensus 8 ~~v~l~g~g~~lt~~~vygi~tG~a~~~i~~~~~~~lq~~~~~-----~~~~~~~~~h~gvg~~l~~~~vRa~m~~rln~ 82 (854)
..|+|+|+ +||+++|+.|..-.+.+.|+++.++++.+.... .+..+.|.-+.|+|...+....++-...-=-+
T Consensus 2 ~~i~l~~~--~lt~~dv~~Var~g~~v~l~~~a~~rI~~sra~v~~iv~~g~~vYGInTGfG~l~~v~I~~~d~~~Lqrn 79 (498)
T COG2986 2 MTIILDPG--SLTLEDLAAIAREGAPVRLDPAAWARIEKARARVAEIVAGGAPVYGINTGFGKLADVRIAAADLATLQRN 79 (498)
T ss_pred ceEEeCCC--CCCHHHHHHHHhcCCceeeCHHHHHHHHHHHHHHHHHHhCCCeeeeeccccccccccccCHHHHHHHHHh
Confidence 46899985 999999999999669999999999988887531 22234566678999876666666544444445
Q ss_pred HhcCCCc
Q 003041 83 LLLGSSI 89 (854)
Q Consensus 83 l~~G~SG 89 (854)
|...||.
T Consensus 80 li~SHa~ 86 (498)
T COG2986 80 LILSHAC 86 (498)
T ss_pred hHHHhhc
Confidence 5555554
No 145
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=52.16 E-value=4.4 Score=50.13 Aligned_cols=78 Identities=17% Similarity=0.137 Sum_probs=59.8
Q ss_pred HHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhhhc-cCCceeeecccccchhhhhhhcc---ccchh
Q 003041 448 REKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQ-GGELCSLRYDLTVPFARYVAMNG---LTSFK 523 (854)
Q Consensus 448 ~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D~-~G~~l~LRpDlT~~~aR~~a~~~---~~p~K 523 (854)
.+.+.+.+++.+...||.|+.|-.|...+.+ . +..+++.++ +-+.=+||+.+.+++.+.++.|. ..++|
T Consensus 400 ~~~~~~~ir~~L~~~Gf~Evitysf~s~~~~---~----~~~i~l~NPiS~e~s~lR~SLlpgLL~~~~~N~~r~~~~~r 472 (704)
T CHL00192 400 DYNTRDKIRSYLRNLGLTELIHYSLVKQESF---S----KNEIKLKNPLIKDYSTLRSSLLPGLIEAVQENLKQGNSTLE 472 (704)
T ss_pred HHHHHHHHHHHHHhCCCceEecccccChhhc---C----CCcEEEeCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCEe
Confidence 4566777899999999999999888665432 1 124556665 44566799999999999998763 46899
Q ss_pred hhhhhhhhc
Q 003041 524 RHQIAKVYR 532 (854)
Q Consensus 524 ~y~ig~VfR 532 (854)
+|++|.||-
T Consensus 473 lFEiG~Vf~ 481 (704)
T CHL00192 473 GFEIGHVFN 481 (704)
T ss_pred EEEeeeeEc
Confidence 999999994
No 146
>TIGR01226 phe_am_lyase phenylalanine ammonia-lyase. Members of this family are found, so far, in plants and fungi. From phenylalanine, this enzyme yields cinnaminic acid, a precursor of many important plant compounds. This protein shows extensive homology to histidine ammonia-lyase, the first enzyme of a histidine degradation pathway.
Probab=51.13 E-value=4.6 Score=49.06 Aligned_cols=60 Identities=22% Similarity=0.177 Sum_probs=46.9
Q ss_pred eEEEecCCCCCCCccceeeeecCceeEEecchhh-hhhhcCCCC-----CCCCCcceeeccCCcccch
Q 003041 8 AVITVGGKGSSLNSSSVYAISNGLAQVRVDSSAL-DRLSSTLPN-----QNPPPVTKFQIPIPKTLTL 69 (854)
Q Consensus 8 ~~v~l~g~g~~lt~~~vygi~tG~a~~~i~~~~~-~~lq~~~~~-----~~~~~~~~~h~gvg~~l~~ 69 (854)
..|+|||+ +||+++|+.|+.+.++|.|+++.+ ++++++... ....+.|..+.|+|..-+.
T Consensus 31 ~~v~l~G~--~Lti~~v~aVA~~~~~V~Ls~~a~~~rv~~S~~~l~~~i~~g~~IYGVnTGfG~~~d~ 96 (680)
T TIGR01226 31 PLIKLDGA--TLTISQVAAAARRGVAVELDESARVERVKASSEWVMTQMSKGTDVYGVTTGFGGTSHR 96 (680)
T ss_pred CeEEECCC--CCCHHHHHHHHhCCCCeeECHHHHHHHHHHHHHHHHHHHhcCCeeeeecCCCCCccCc
Confidence 45999996 999999999998889999999999 898887641 2224567777888875433
No 147
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=49.27 E-value=10 Score=44.75 Aligned_cols=93 Identities=9% Similarity=-0.019 Sum_probs=71.5
Q ss_pred chhhhhhhhcCC--------CccchHHHHHHHhhhccceeee-eh-hhHHHHHhhhhcCCCceEEEeecccccccceeee
Q 003041 760 TETQVLVGLLGD--------KLPLAAELVSELWNAKVKAEYM-VH-KKVMKLIDRARESKIPWMVIVGERELNEGIVKLK 829 (854)
Q Consensus 760 ~~~dVlV~~~~~--------~~~~a~~la~~Lr~~GI~ael~-~~-~~l~k~l~~A~~~gi~~iviIg~~e~~~g~V~Vk 829 (854)
++.+|.+++... ....+.++...|...+++++.+ .+ ...+.++..++-.++++++-+|.+..++.+++|.
T Consensus 284 A~~qV~~~~~~~~ga~~h~~~~~~~rd~~~~l~~~~~~~~~D~~~~~~~G~kl~~~e~ieVghif~lG~kyse~~~a~v~ 363 (500)
T COG0442 284 ADIQVVIVPIFIKGANEHYKVVNYGRDVAEPLEKLGIRVEGDDRSPDGPGFKLNIWEGIEVGHIFELGTKYSEAMNATVL 363 (500)
T ss_pred ccceEEEEeccccCcchhhhhhhhhhhhhhhhhhcceEEeccccCCCCCCceeeeeeccccCEEEEECchhhhhCeeEEE
Confidence 566777665431 2345667777788888999998 43 4588899999999999999999999999999999
Q ss_pred ccccch--hhhcchhhhHHH-HHHhh
Q 003041 830 NIDTTQ--EEVISRSNFVEE-IQRRL 852 (854)
Q Consensus 830 ~l~~~~--e~~v~~~elv~~-L~~~l 852 (854)
+..+++ -..++....+.. +...+
T Consensus 364 ~r~g~~~~~~mg~ygigvsr~v~a~i 389 (500)
T COG0442 364 DRDGKEQPKTMGCYGIGVSRLVAALL 389 (500)
T ss_pred ecCCCccceEEEehhhhhhhHHHHHH
Confidence 988887 556777777766 44444
No 148
>cd00332 PAL-HAL Phenylalanine ammonia-lyase (PAL) and histidine ammonia-lyase (HAL). PAL and HAL are members of the Lyase class I_like superfamily of enzymes that, catalyze similar beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. PAL, present in plants and fungi, catalyzes the conversion of L-phenylalanine to E-cinnamic acid. HAL, found in several bacteria and animals, catalyzes the conversion of L-histidine to E-urocanic acid. Both PAL and HAL contain the cofactor 3, 5-dihydro-5-methylidene-4H-imidazol-4-one (MIO) which is formed by autocatalytic excision/cyclization of the internal tripeptide, Ala-Ser-Gly. PAL is being explored as enzyme substitution therapy for Phenylketonuria (PKU), a disorder which involves an inability to metabolize phenylalanine. HAL failure in humans results in the disease histidinemia.
Probab=48.48 E-value=8.2 Score=44.94 Aligned_cols=69 Identities=22% Similarity=0.259 Sum_probs=51.0
Q ss_pred CCCccceeeeecCceeEEecchhhhhhhcCCCC-----CCCCCcceeeccCCcc----cchhhhHHHHHHHHHHHhcC
Q 003041 18 SLNSSSVYAISNGLAQVRVDSSALDRLSSTLPN-----QNPPPVTKFQIPIPKT----LTLEESRAFLTVLLNKLLLG 86 (854)
Q Consensus 18 ~lt~~~vygi~tG~a~~~i~~~~~~~lq~~~~~-----~~~~~~~~~h~gvg~~----l~~~~vRa~m~~rln~l~~G 86 (854)
+||+++|+.|+.|.++|+++++.+++++++... ++..+.|..+.|+|.. ++++..+..-.--+-+.+.|
T Consensus 2 ~Lt~~~v~~va~~~~~v~ls~~a~~ri~~s~~~l~~~~~~~~~iYGvnTG~G~~~d~~i~~~~~~~~q~nLi~sha~G 79 (444)
T cd00332 2 SLTLEDVVAVARGGEKVELSPEARERVDASRAALEEAAAEGKPVYGVNTGFGALADVRIDDADLRALQRNLLRSHAAG 79 (444)
T ss_pred CCCHHHHHHHHhCCCceeeCHHHHHHHHHHHHHHHHHHhcCCceeeeCCCCCCcCCcccCHHHHHHHHHHHHHHHhcC
Confidence 699999999999989999999999999988641 3335677888999985 45555555554444444444
No 149
>PLN02457 phenylalanine ammonia-lyase
Probab=45.20 E-value=13 Score=45.55 Aligned_cols=77 Identities=18% Similarity=0.168 Sum_probs=52.4
Q ss_pred eEEEecCCCCCCCccceeeeecC---ceeEEecchhhhhhhcCCCC-----CCCCCcceeeccCCcccch--hhhHHHHH
Q 003041 8 AVITVGGKGSSLNSSSVYAISNG---LAQVRVDSSALDRLSSTLPN-----QNPPPVTKFQIPIPKTLTL--EESRAFLT 77 (854)
Q Consensus 8 ~~v~l~g~g~~lt~~~vygi~tG---~a~~~i~~~~~~~lq~~~~~-----~~~~~~~~~h~gvg~~l~~--~~vRa~m~ 77 (854)
..|+|||+ +||+++|+.|+.+ .+.|.++++.+++++++... ....+.|.-+.|+|..-+. +.......
T Consensus 44 ~~v~l~G~--~Lti~~V~aVA~~~~~~~~V~ls~~a~~ri~~S~~~l~~~~~~g~~iYGVtTGfG~~~d~ri~~~~~LQ~ 121 (706)
T PLN02457 44 PVVKLEGE--TLTIAQVAAVARRGAGGVRVELSESARARVKASSDWVMESMMKGTDSYGVTTGFGATSHRRTKQGGALQR 121 (706)
T ss_pred ceEEECCC--CCCHHHHHHHHhcCCCCCeeeeCHHHHHHHHHHHHHHHHHHhcCCeeeeecCCCCCccCCchhHHHHHHH
Confidence 45999996 9999999999986 47899999999999888631 2224556667888875433 23333333
Q ss_pred HHHHHHhcC
Q 003041 78 VLLNKLLLG 86 (854)
Q Consensus 78 ~rln~l~~G 86 (854)
--+-+++.|
T Consensus 122 nLirshaaG 130 (706)
T PLN02457 122 ELIRFLNAG 130 (706)
T ss_pred HHHHHHhcC
Confidence 333444444
No 150
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=41.86 E-value=26 Score=33.83 Aligned_cols=70 Identities=19% Similarity=0.209 Sum_probs=44.2
Q ss_pred CCCCchHHHHHHHHHHHhhc-ccCCCCCCCccc-hhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhH
Q 003041 406 PRDPEFDGLLTKIREIVESN-ESRRLPKLPKGT-RDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMR 475 (854)
Q Consensus 406 p~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~G~-~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~ 475 (854)
-.||||+.+..-|.-+...+ +.-++..|..|- .|+.+.....++..-++|+...+++||.-++..--++.
T Consensus 30 ~~SpEy~Dl~l~L~~~k~~g~~~lfVi~PvNg~wydytG~~~~~r~~~y~kI~~~~~~~gf~v~D~s~~~y~ 101 (130)
T PF04914_consen 30 TKSPEYDDLQLLLDVCKELGIDVLFVIQPVNGKWYDYTGLSKEMRQEYYKKIKYQLKSQGFNVADFSDDEYE 101 (130)
T ss_dssp SS-THHHHHHHHHHHHHHTT-EEEEEE----HHHHHHTT--HHHHHHHHHHHHHHHHTTT--EEE-TTGTTS
T ss_pred cCCccHHHHHHHHHHHHHcCCceEEEecCCcHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEecccCCCC
Confidence 35899999866665555544 334667777774 88888888899999999999999999977765544443
No 151
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=40.38 E-value=11 Score=46.12 Aligned_cols=88 Identities=17% Similarity=0.169 Sum_probs=61.9
Q ss_pred HHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhhhc-cCCceeeecccccchhhhhhhcc--ccc-h
Q 003041 447 VREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQ-GGELCSLRYDLTVPFARYVAMNG--LTS-F 522 (854)
Q Consensus 447 ~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D~-~G~~l~LRpDlT~~~aR~~a~~~--~~p-~ 522 (854)
..+.....+++.+...||+|+.|-.|.+.+.... .+....+..++..+ +-+.-+||+.+-+++.+.++.|. ..| .
T Consensus 352 ~~~~~~r~vr~~l~~~G~~Evitysl~s~e~~~~-~~~~~~~~~~l~NPiS~e~s~mR~sLlp~LL~~~~~N~~r~~~~~ 430 (650)
T COG0072 352 PLQKFRRKVRRALVGLGFQEVITYSLTSPEEAKL-FGLENDEALELANPISEEYSVLRTSLLPGLLEALSYNKNRKNPDV 430 (650)
T ss_pred hHHHHHHHHHHHHHhCCcceEeeeccCCHHHHHH-hccCCCcceEecCCcchhHHHHHHHHHHHHHHHHHHhhccCCCCe
Confidence 3355566689999999999999998887775433 22211113444444 33455789999999999998763 456 8
Q ss_pred hhhhhhhhhcccC
Q 003041 523 KRHQIAKVYRRDN 535 (854)
Q Consensus 523 K~y~ig~VfR~e~ 535 (854)
|+|++|.||-.+.
T Consensus 431 ~iFEiG~v~~~~~ 443 (650)
T COG0072 431 RIFEIGDVFVKDE 443 (650)
T ss_pred eEEEeeeeEecCC
Confidence 9999999998653
No 152
>COG4038 Predicted membrane protein [Function unknown]
Probab=34.52 E-value=16 Score=31.25 Aligned_cols=32 Identities=38% Similarity=0.684 Sum_probs=26.4
Q ss_pred cccc--------ccccccCCcccccccccCCcccCccceeh
Q 003041 705 YYTG--------VGSIAAGGRYDNLIGMFGTKQVPAVGVSL 737 (854)
Q Consensus 705 YYtG--------~~~Ia~GGRYD~Li~~fg~~~~pAvGfsi 737 (854)
+|+| .+..++-||-|-.++.++- ++|+||.|+
T Consensus 8 ~y~ga~~ii~gs~~~~~gp~~~dpiv~~LN~-EiPtvGVSL 47 (87)
T COG4038 8 LYTGAFMIILGTLGAAIGPARSDPVVKSLNL-ELPTVGVSL 47 (87)
T ss_pred hhhccHHHHHhHHHhhcCCcccCcHHHHhcc-ccccceeee
Confidence 7888 3467788999999988874 799999874
No 153
>KOG0222 consensus Phenylalanine and histidine ammonia-lyase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=33.17 E-value=19 Score=41.60 Aligned_cols=38 Identities=21% Similarity=0.388 Sum_probs=35.5
Q ss_pred EEecCCCCCCCccceeeeecCceeEEecchhhhhhhcCCC
Q 003041 10 ITVGGKGSSLNSSSVYAISNGLAQVRVDSSALDRLSSTLP 49 (854)
Q Consensus 10 v~l~g~g~~lt~~~vygi~tG~a~~~i~~~~~~~lq~~~~ 49 (854)
|.|||+ .||+.++..+.+|.+.|.+++++.++++.+..
T Consensus 66 v~L~Ge--tLt~~qva~~~kg~~~veLs~ea~~~V~as~~ 103 (715)
T KOG0222|consen 66 VNLGGE--TLTIGQVAAVAKGGVKVELSEEARAGVKASSD 103 (715)
T ss_pred eeeCCc--cccHHHHHHhccCceeEEeCHHHHhhhhhhHH
Confidence 889997 89999999999999999999999999998864
No 154
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=32.94 E-value=13 Score=42.33 Aligned_cols=53 Identities=40% Similarity=0.728 Sum_probs=41.9
Q ss_pred eeeeeccccccCccccc-------ccccccCCcccccccccCC-cccCccceehhhHHHHH
Q 003041 692 KVVFDLSLARGLDYYTG-------VGSIAAGGRYDNLIGMFGT-KQVPAVGVSLGIERVFT 744 (854)
Q Consensus 692 ~I~~D~sl~rgl~YYtG-------~~~Ia~GGRYD~Li~~fg~-~~~pAvGfsigieRL~~ 744 (854)
+...|..+.+..+||+| .....+|||||.+...++. ..++++||++..+|...
T Consensus 323 ~~~~~~~f~~~~~~~~~~~~e~~~~~r~~g~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~ 383 (390)
T COG3705 323 ERRYAALFGRELDYYTGAAFEAAQALRLAGGGRYDRLLTGLGASEEIPGVGFSLWLDRGVA 383 (390)
T ss_pred cchhhhccCccchhhHHHHHHHHHHhcccCCeEEEecccccchHhhhcccceeEeecccce
Confidence 55666677788999999 2357899999999887764 45789999999998743
No 155
>KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=24.96 E-value=30 Score=39.10 Aligned_cols=97 Identities=16% Similarity=0.228 Sum_probs=58.7
Q ss_pred HHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhhhccCCceeeecccccchhhhhhhccccchhh
Q 003041 445 MAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGLTSFKR 524 (854)
Q Consensus 445 ~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D~~G~~l~LRpDlT~~~aR~~a~~~~~p~K~ 524 (854)
..+|..+...+++.|...||.||.+|.+--..+ +....+|++ |--|+.--| |.+---|+-+-....-..
T Consensus 243 LK~Ra~~lr~~Rd~y~~~~ytEVtPPtmVQTQV------EGGsTLFkl-dYyGEeAyL----TQSSQLYLEtclpAlgdv 311 (545)
T KOG0555|consen 243 LKARAALLRAMRDHYFERGYTEVTPPTMVQTQV------EGGSTLFKL-DYYGEEAYL----TQSSQLYLETCLPALGDV 311 (545)
T ss_pred HHHHHHHHHHHHHHHHhcCceecCCCceEEEEe------cCcceEEee-cccCchhhc----cchhHHHHHHhhhhcCce
Confidence 466777778889999999999999998753221 111224554 443433222 222222222211223478
Q ss_pred hhhhhhhcccCCCC-cccccccccccccc
Q 003041 525 HQIAKVYRRDNPSK-GRYREFYQCDFDIA 552 (854)
Q Consensus 525 y~ig~VfR~e~p~~-Gr~REf~Q~d~eii 552 (854)
|+|.+.||.|+++. -+.-||+-+.+|+-
T Consensus 312 y~I~~SyRAEkSrTRRHLsEytHVEaE~a 340 (545)
T KOG0555|consen 312 YCIQQSYRAEKSRTRRHLSEYTHVEAECA 340 (545)
T ss_pred eEecHhhhhhhhhhhhhhhhheeeeeecc
Confidence 99999999997654 35668877777654
No 156
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=24.26 E-value=33 Score=37.33 Aligned_cols=32 Identities=19% Similarity=0.435 Sum_probs=21.9
Q ss_pred cccccccccCCcccCccceehhhHHHHHHHHH
Q 003041 717 RYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQ 748 (854)
Q Consensus 717 RYD~Li~~fg~~~~pAvGfsigieRL~~~L~~ 748 (854)
-|+..++.+.....|+-||++|+|||+..+..
T Consensus 223 ~~~~yl~a~~~G~pp~~G~glGieRL~m~~~g 254 (269)
T cd00669 223 YFEFYLKALEYGLPPHGGLGIGIDRLIMLMTN 254 (269)
T ss_pred cHHHHHHHHHcCCCCCceEeeHHHHHHHHHhC
Confidence 34445544322245789999999999988864
No 157
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=21.83 E-value=90 Score=32.50 Aligned_cols=36 Identities=22% Similarity=0.171 Sum_probs=22.9
Q ss_pred ccccCCccccccccc--------CCc-ccCccceehhhHHHHHHH
Q 003041 711 SIAAGGRYDNLIGMF--------GTK-QVPAVGVSLGIERVFTIM 746 (854)
Q Consensus 711 ~Ia~GGRYD~Li~~f--------g~~-~~pAvGfsigieRL~~~L 746 (854)
.++++++|+++-..+ ++. ..+.+++++++||++.++
T Consensus 190 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eR~l~al 234 (235)
T cd00670 190 ETAVGSANVHLDHFGASFKIDEDGGGRAHTGCGGAGGEERLVLAL 234 (235)
T ss_pred eeeEEEeecchhhhhccEEEccCCCceeeEEEeCccHHHHHHHHH
Confidence 455666666654432 222 244777889999998876
No 158
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=20.01 E-value=44 Score=36.55 Aligned_cols=20 Identities=25% Similarity=0.649 Sum_probs=16.9
Q ss_pred ccCccceehhhHHHHHHHHH
Q 003041 729 QVPAVGVSLGIERVFTIMEQ 748 (854)
Q Consensus 729 ~~pAvGfsigieRL~~~L~~ 748 (854)
-.|+-||++|+|||+..+..
T Consensus 246 ~pP~~G~giGidRL~m~~~g 265 (280)
T cd00777 246 APPHGGIALGLDRLVMLLTG 265 (280)
T ss_pred CCCCCeEeEhHHHHHHHHcC
Confidence 35888999999999988764
Done!