Query 003041
Match_columns 854
No_of_seqs 524 out of 2158
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 11:09:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003041.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003041hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3unv_A ADMH; MIO, lyase; HET: 100.0 1E-79 3.6E-84 699.5 -1.8 310 22-343 75-492 (547)
2 1gkm_A Histidase, HAL, histidi 100.0 1.8E-79 6.3E-84 695.6 -6.7 309 22-343 50-450 (507)
3 2qve_A Tyrosine aminomutase; M 100.0 4.3E-78 1.5E-82 687.1 0.6 330 22-384 49-487 (526)
4 2nyn_A Phenylalanine/histidine 100.0 4.3E-78 1.5E-82 688.5 -2.9 340 22-386 75-518 (565)
5 4g85_A Histidine-tRNA ligase, 100.0 9.5E-76 3.2E-80 685.6 14.1 427 426-854 62-515 (517)
6 4g84_A Histidine--tRNA ligase, 100.0 3.4E-75 1.1E-79 673.2 14.8 426 427-854 10-462 (464)
7 2o6y_A Putative histidine ammo 100.0 3.7E-77 1.3E-81 678.8 -2.4 310 22-343 57-472 (521)
8 1w27_A Phenylalanine ammonia-l 100.0 8.6E-76 2.9E-80 680.7 2.2 309 22-344 107-525 (714)
9 2yii_A Phenylalanine ammonia-l 100.0 6E-75 2E-79 672.9 2.2 309 22-344 97-516 (705)
10 1y2m_A Phenylalanine ammonia-l 100.0 6.6E-75 2.3E-79 674.8 0.4 308 23-344 108-539 (716)
11 3net_A Histidyl-tRNA synthetas 100.0 3.6E-72 1.2E-76 646.2 11.9 415 428-852 9-464 (465)
12 3lc0_A Histidyl-tRNA synthetas 100.0 3E-71 1E-75 634.9 11.7 400 429-844 27-446 (456)
13 1wu7_A Histidyl-tRNA synthetas 100.0 3E-67 1E-71 601.7 14.0 406 428-853 3-426 (434)
14 3od1_A ATP phosphoribosyltrans 100.0 6.2E-64 2.1E-68 565.3 9.0 373 429-821 8-394 (400)
15 4e51_A Histidine--tRNA ligase; 100.0 2.2E-62 7.7E-67 564.2 10.6 388 430-852 31-458 (467)
16 1h4v_B Histidyl-tRNA synthetas 100.0 1.5E-60 5.1E-65 544.3 16.9 391 430-852 2-420 (421)
17 1htt_A Histidyl-tRNA synthetas 100.0 8.3E-61 2.8E-65 546.7 10.9 391 430-852 3-422 (423)
18 3rac_A Histidine-tRNA ligase; 100.0 7.7E-58 2.6E-62 511.2 8.9 311 430-751 22-368 (373)
19 1qe0_A Histidyl-tRNA synthetas 100.0 4.9E-56 1.7E-60 506.8 8.4 386 431-849 2-419 (420)
20 1z7m_A ATP phosphoribosyltrans 100.0 1.4E-55 4.8E-60 488.5 8.7 303 429-749 20-337 (344)
21 2j3l_A Prolyl-tRNA synthetase; 100.0 7.3E-45 2.5E-49 430.0 8.7 412 428-853 30-565 (572)
22 1evl_A Threonyl-tRNA synthetas 100.0 3.3E-43 1.1E-47 398.5 12.7 348 430-853 15-392 (401)
23 1usy_A ATP phosphoribosyltrans 100.0 1.5E-44 5.1E-49 388.6 -1.2 255 449-742 4-273 (275)
24 2i4l_A Proline-tRNA ligase; al 100.0 5E-44 1.7E-48 411.3 1.7 390 404-848 33-457 (458)
25 1nyr_A Threonyl-tRNA synthetas 100.0 1.5E-42 5.1E-47 414.8 5.3 358 433-853 259-640 (645)
26 3a32_A Probable threonyl-tRNA 100.0 1.6E-40 5.5E-45 383.4 7.5 359 433-852 37-446 (471)
27 1qf6_A THRRS, threonyl-tRNA sy 100.0 4.1E-39 1.4E-43 383.6 14.3 349 429-853 255-633 (642)
28 1hc7_A Prolyl-tRNA synthetase; 100.0 4E-38 1.4E-42 362.6 8.6 325 432-852 31-385 (477)
29 1nj8_A Proline-tRNA synthetase 100.0 8.8E-38 3E-42 358.6 11.0 325 432-852 25-379 (459)
30 3uh0_A Threonyl-tRNA synthetas 100.0 4.7E-37 1.6E-41 352.0 14.3 351 431-853 50-457 (460)
31 2zt5_A Glycyl-tRNA synthetase; 100.0 1.1E-35 3.9E-40 354.2 12.1 392 433-853 89-657 (693)
32 1nj1_A PROR, proline-tRNA synt 100.0 2.6E-36 8.9E-41 349.5 5.7 325 432-852 58-412 (501)
33 1ati_A Glycyl-tRNA synthetase; 100.0 4.9E-33 1.7E-37 322.4 6.7 350 433-853 27-504 (505)
34 4hvc_A Bifunctional glutamate/ 100.0 7.4E-31 2.5E-35 302.8 9.1 328 432-853 48-413 (519)
35 3ial_A Prolyl-tRNA synthetase; 100.0 2.5E-29 8.5E-34 289.4 6.6 316 432-844 42-398 (518)
36 1g5h_A Mitochondrial DNA polym 99.9 7.2E-25 2.5E-29 250.3 -1.5 328 436-852 52-437 (454)
37 3ikl_A DNA polymerase subunit 99.8 2.4E-22 8.2E-27 226.8 4.8 312 435-853 93-448 (459)
38 2dq3_A Seryl-tRNA synthetase; 99.7 2E-17 6.7E-22 187.5 3.5 149 433-586 160-324 (425)
39 1ses_A Seryl-tRNA synthetase; 99.6 1.6E-16 5.4E-21 179.7 3.3 144 433-581 154-314 (421)
40 2dq0_A Seryl-tRNA synthetase; 99.6 3.9E-16 1.3E-20 177.9 5.7 150 433-587 181-345 (455)
41 2cja_A Seryl-tRNA synthetase; 99.6 1.4E-15 4.6E-20 175.1 5.4 164 404-578 198-407 (522)
42 3dsq_A Pyrrolysyl-tRNA synthet 99.5 8.1E-15 2.8E-19 157.9 4.3 136 446-583 71-210 (288)
43 1nnh_A Asparaginyl-tRNA synthe 99.4 4.8E-14 1.7E-18 152.4 3.1 124 443-576 13-141 (294)
44 3vbb_A Seryl-tRNA synthetase, 99.4 6.3E-14 2.2E-18 160.2 2.6 148 434-583 190-362 (522)
45 1wle_A Seryl-tRNA synthetase; 99.4 1.4E-13 4.9E-18 157.7 3.3 148 433-582 207-371 (501)
46 3lss_A Seryl-tRNA synthetase; 99.3 3.7E-13 1.2E-17 153.1 2.2 147 434-583 197-360 (484)
47 3err_A Fusion protein of micro 99.3 1.3E-12 4.5E-17 151.3 3.3 145 434-583 264-425 (536)
48 3qne_A Seryl-tRNA synthetase, 99.2 1.7E-12 5.7E-17 147.5 1.4 147 434-583 174-337 (485)
49 3qtc_A Pyrrolysyl-tRNA synthet 99.2 8.2E-12 2.8E-16 134.9 6.0 127 448-583 79-213 (290)
50 1v95_A Nuclear receptor coacti 99.0 9.4E-11 3.2E-15 109.9 4.1 94 759-852 6-105 (130)
51 1n9w_A Aspartyl-tRNA synthetas 98.8 8.9E-10 3.1E-14 124.5 2.3 117 442-575 122-241 (422)
52 3mf2_A BLL0957 protein; aminoa 98.8 7.8E-10 2.7E-14 119.8 1.7 148 435-585 54-233 (346)
53 1x54_A Asparaginyl-tRNA synthe 98.8 1.3E-09 4.3E-14 123.8 2.7 117 441-575 131-250 (434)
54 1wyd_A Hypothetical aspartyl-t 98.8 1.7E-09 6E-14 122.3 2.6 116 442-575 131-249 (429)
55 1eov_A ASPRS, aspartyl-tRNA sy 98.6 1.2E-08 4.3E-13 117.2 3.6 116 442-574 175-294 (487)
56 3a74_A Lysyl-tRNA synthetase; 98.3 2.7E-07 9.3E-12 106.1 3.2 116 443-575 172-291 (493)
57 3l4g_A Phenylalanyl-tRNA synth 98.2 1.3E-06 4.4E-11 99.8 6.7 134 449-585 228-408 (508)
58 1e1o_A Lysyl-tRNA synthetase, 98.0 2E-06 7E-11 99.0 3.2 118 443-574 181-299 (504)
59 3a5y_A GENX, putative lysyl-tR 98.0 2.4E-06 8.1E-11 94.0 3.1 118 444-575 35-158 (345)
60 2du3_A O-phosphoseryl-tRNA syn 97.9 4.7E-06 1.6E-10 95.7 3.8 82 499-583 180-265 (534)
61 1b7y_A Phers, protein (phenyla 97.8 1.4E-05 4.7E-10 87.9 5.6 124 449-577 104-247 (350)
62 2xgt_A Asparaginyl-tRNA synthe 97.7 1.4E-05 4.8E-10 90.7 3.4 116 441-574 128-246 (435)
63 3nem_A Aspartyl-tRNA synthetas 97.6 2.3E-05 8E-10 88.7 3.8 102 443-554 135-237 (438)
64 2du7_A O-phosphoseryl-tRNA syn 97.6 4.2E-05 1.4E-09 87.8 5.2 82 499-583 192-277 (549)
65 2rhq_A Phenylalanyl-tRNA synth 97.5 8.2E-05 2.8E-09 80.1 5.2 122 448-577 55-186 (294)
66 3m4p_A Ehasnrs, asparaginyl-tR 97.2 0.00011 3.8E-09 83.6 3.1 101 443-554 154-255 (456)
67 1l0w_A Aspartyl-tRNA synthetas 97.2 0.00017 5.8E-09 84.4 3.9 102 443-554 142-245 (580)
68 3i7f_A Aspartyl-tRNA synthetas 97.1 0.00024 8.2E-09 82.1 4.8 101 443-553 242-344 (548)
69 1c0a_A Aspartyl tRNA synthetas 97.1 0.00018 6.2E-09 84.4 3.7 102 443-554 136-239 (585)
70 3bju_A Lysyl-tRNA synthetase; 97.1 0.00021 7E-09 82.7 3.1 103 443-554 174-277 (521)
71 4ex5_A Lysine--tRNA ligase; st 97.0 0.00022 7.5E-09 82.3 3.1 103 443-554 202-305 (529)
72 2odr_B Phosphoseryl-tRNA synth 97.0 0.00037 1.3E-08 80.6 4.7 81 499-583 199-284 (648)
73 2odr_A Phosphoseryl-tRNA synth 97.0 0.00038 1.3E-08 80.6 4.7 81 499-583 199-284 (665)
74 2odr_D Phosphoseryl-tRNA synth 97.0 0.00039 1.3E-08 80.7 4.7 81 499-583 199-284 (685)
75 2odr_C Phosphoseryl-tRNA synth 96.9 0.00042 1.4E-08 80.5 4.2 81 499-583 199-284 (701)
76 4ah6_A Aspartate--tRNA ligase, 96.8 0.00073 2.5E-08 79.2 4.8 117 443-574 146-264 (617)
77 3pco_A Phenylalanyl-tRNA synth 96.8 0.00056 1.9E-08 74.3 3.5 116 449-575 110-234 (327)
78 3ica_A Phenylalanyl-tRNA synth 96.5 0.0024 8.2E-08 65.3 5.5 135 448-583 6-161 (213)
79 3ig2_A Phenylalanyl-tRNA synth 96.3 0.0025 8.4E-08 65.2 4.6 134 449-583 7-161 (213)
80 3l4g_B Phenylalanyl-tRNA synth 96.3 0.0026 8.9E-08 74.9 5.4 126 449-578 394-525 (589)
81 2rhq_B Phenylalanyl-tRNA synth 95.8 0.0046 1.6E-07 75.1 4.2 128 448-578 495-635 (795)
82 1b7y_B Phers, protein (phenyla 94.8 0.015 5E-07 70.5 4.0 125 448-583 491-627 (785)
83 3cmq_A Phenylalanyl-tRNA synth 93.1 0.051 1.8E-06 61.0 3.9 92 449-548 51-159 (415)
84 3pco_B Phenylalanyl-tRNA synth 90.0 0.16 5.5E-06 61.6 3.9 132 450-583 493-637 (795)
85 1gkm_A Histidase, HAL, histidi 73.3 1 3.6E-05 51.4 1.4 77 8-86 1-86 (507)
86 3unv_A ADMH; MIO, lyase; HET: 67.2 1.1 3.6E-05 51.7 -0.3 78 9-89 27-113 (547)
87 2qve_A Tyrosine aminomutase; M 64.9 1.6 5.6E-05 50.0 0.7 75 10-86 2-85 (526)
88 2nyn_A Phenylalanine/histidine 55.5 2.3 7.7E-05 49.1 -0.3 76 9-86 25-111 (565)
89 2o6y_A Putative histidine ammo 55.0 3.6 0.00012 47.1 1.3 76 10-89 11-95 (521)
90 1x54_A Asparaginyl-tRNA synthe 51.0 4.3 0.00015 45.6 1.1 33 716-748 383-415 (434)
91 1wyd_A Hypothetical aspartyl-t 42.7 8.1 0.00028 43.3 1.6 33 716-748 378-410 (429)
92 1w27_A Phenylalanine ammonia-l 41.3 5.9 0.0002 46.8 0.2 80 8-89 55-144 (714)
93 2yii_A Phenylalanine ammonia-l 30.3 8.4 0.00029 45.5 -0.9 79 8-88 45-133 (705)
94 3bma_A D-alanyl-lipoteichoic a 25.1 43 0.0015 37.1 3.6 68 407-474 271-341 (407)
95 1y2m_A Phenylalanine ammonia-l 23.1 17 0.00057 43.1 -0.2 58 8-68 58-121 (716)
No 1
>3unv_A ADMH; MIO, lyase; HET: KWS SFE PHE; 1.54A {Pantoea agglomerans}
Probab=100.00 E-value=1e-79 Score=699.54 Aligned_cols=310 Identities=17% Similarity=0.127 Sum_probs=282.9
Q ss_pred cceeeeecC---ceeEEecchhhhhhhcCCCCCCCCCcceee-ccCCcccchhhhHHHHHHHHHHHhcCCCcch-hHHHH
Q 003041 22 SSVYAISNG---LAQVRVDSSALDRLSSTLPNQNPPPVTKFQ-IPIPKTLTLEESRAFLTVLLNKLLLGSSIRT-AFAVL 96 (854)
Q Consensus 22 ~~vygi~tG---~a~~~i~~~~~~~lq~~~~~~~~~~~~~~h-~gvg~~l~~~~vRa~m~~rln~l~~G~SG~~-~~~~l 96 (854)
.+||||||| +++++|+++++++||+|++ +|| ||||++||+++|||||++|+|+|++||||++ .+++.
T Consensus 75 ~~vYGvnTGfG~~a~~~i~~~~~~~LQ~nLi--------rsHa~GvG~~l~~~~vRa~mllRlnsL~~G~SGVr~evve~ 146 (547)
T 3unv_A 75 RVIYGVNTSMGGFVNYIVPIAKASELQNNLI--------NAVATNVGKYFDDTTVRATMLARIVSLSRGNSAISIVNFKK 146 (547)
T ss_dssp CCCBTTTBCCGGGTTCBCCGGGHHHHHHHHH--------HHTCCCEEEECCHHHHHHHHHHHHHHHHTSCSCCCHHHHHH
T ss_pred CceeceecCCCCccCCccCHHHHHHHHHHHH--------HHHhcCCCCCCCHHHHHHHHHHHHHHHccCCCCcCHHHHHH
Confidence 369999999 7999999999999999999 999 9999999999999999999999999999944 45555
Q ss_pred H---------HHhhcccccce------ec----------------------------ceeeecccceeeeeccCcchhhh
Q 003041 97 I---------SETLNSQTETL------QF----------------------------ESVDVTEDERIVLEKLSLPSVLS 133 (854)
Q Consensus 97 ~---------~~~~~~g~~~~------~~----------------------------~p~~l~~ke~~~l~~~~~~~~~~ 133 (854)
+ |.+|.+||||+ |+ +|+.|++|||++|.| + |++|+
T Consensus 147 L~~lLN~~i~P~VP~~GSVGADLaPLahial~LiGeg~v~~~G~~~~a~eaL~~aGl~Pl~L~~KEGLALiN-G-T~~~t 224 (547)
T 3unv_A 147 LIEIYNQGIVPCIPEKGSLGXDLGPLAAIALVCTGQWKARYQGEQMSGAMALEKAGISPMELSFKEGLALIN-G-TSAMV 224 (547)
T ss_dssp HHHHHHTTCEECCEEECCCSSCHHHHHHHHHHHTTCSEEEETTEEEEHHHHHHHHTCCCCCCCTTHHHHHHS-S-SHHHH
T ss_pred HHHHHhCCCcccCCCCCCCCccchHHHHHHHHHhCCCceEECCEEeeHHHHHHHcCCCCccCCcchHHHHhc-c-cHHHH
Confidence 5 45677777775 21 699999999744433 3 67999
Q ss_pred chhhhccccchhhhHHHHHHHhhccccccCcccccccccCCCCccccccccccccceeeecCceeee-------------
Q 003041 134 GICAVLDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDGFTAKEEIGVAGDLKVLLNGSKLVG------------- 200 (854)
Q Consensus 134 a~~~l~~~~a~~l~~~a~~~~Als~eal~g~~~~f~~~~~~~~rph~gq~~~A~~~r~lL~gs~~~~------------- 200 (854)
|+++++++++++|+++||+++|||+||++|+++||||++ |++||||||+++|++||.+|+||+++.
T Consensus 225 a~a~lal~~a~~L~~~a~~~~Als~Eal~G~~~~fd~~i-h~~Rph~GQ~~~A~~ir~lL~gS~l~~~~~~~r~~~~~~~ 303 (547)
T 3unv_A 225 GLGVLLYDEVKRLFDTYLTVTSLSIEGLHGKTKPFEPAV-HRMKPHQGQLEVATTIWETLADSSLAVNEHEVEKLIAEEM 303 (547)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBSGGGCHHH-HTTSCCHHHHHHHHHHHHHTTTCSSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhcChHH-HhhCCCchHHHHHHHHHHHhcCCccccccccccccccccc
Confidence 999999999999999999999999999999999999998 599999999999999999999999864
Q ss_pred ----------eeccccccccccccchHHHHHHHhhccceEEeccccee----c---c--ccc---hhhHhhhHHHHHHHH
Q 003041 201 ----------KMKSEDILEIPKINGKLREVVKSVHSSTRVELNSSVKV----G---I--SGT---AKAVGANALALAAAI 258 (854)
Q Consensus 201 ----------~~D~yslRc~Pqv~Ga~~d~l~~~~~~~~~ElNs~~~~----~---~--~~~---~~~~~~~~d~l~~a~ 258 (854)
-||||||||+||||||++|+|+++++++++||||++|. + + ||| |++++++||+|++|+
T Consensus 304 ~~~~~~~~~~vQD~YSlRc~PQv~Ga~~d~l~~a~~~le~ElNS~tDNPli~~~~g~v~sgGNFhg~pva~amD~l~iAl 383 (547)
T 3unv_A 304 DGLVKASNHQIEDAYSIRCTPQILGPVADTLKNIKQTLTNELNSSNDNPLIDQTTEEVFHNGHFHGQYVSMAMDHLNIAL 383 (547)
T ss_dssp SSSCCCCSCCSSCCHHHHTHHHHHHHHHHHHHHHHHHHHHHHTSCCCSSEEETTTTEEECCCTTCTHHHHHHHHHHHHHH
T ss_pred ccccccccCcCcCCccccchhHHhHHHHHHHHHHHHHHHHHHccCCCCCceeCCCCceecCCCccchhHHHHHHHHHHHH
Confidence 36999999999999999999999999999999999983 2 2 665 888899999999999
Q ss_pred HhhcccchhhhcccccccCcccccccccc-c-----------------CCCchhhhh---HHHHhhhccchhhHHHHHHH
Q 003041 259 HNLGESSLYRAKMNLNSINSDGLRSLFEK-D-----------------CSSGDNLRK---TYKLVLDANFEEDYVKFLHE 317 (854)
Q Consensus 259 ~~l~~~serr~~~l~~~~~~~gLp~fL~~-~-----------------~~~~~~l~~---~~~~~~s~~~~edh~s~~~~ 317 (854)
+++|++||||+++|+||.+|+|||+||++ + ++||+.|++ +||+|||++ ||||||||+.
T Consensus 384 a~lg~iserR~~~Lvnp~~s~GLP~fL~~~~~glnsGfmi~Q~taaal~sE~k~La~PaSvds~pts~~-qED~vSmg~~ 462 (547)
T 3unv_A 384 VTMMNLANRRIDRFMDKSNSNGLPPFLCAENAGLRLGLMGGQFMTASITAESRASCMPMSIQSLSTTGD-FQDIVSFGLV 462 (547)
T ss_dssp HHHHHHHHHHHHHHHCTTTTTSCCGGGCCSSBTTBCTTTTHHHHHHHHHHHHHHTCCCSTTCCCCBTTT-TBCSCCCHHH
T ss_pred HHHHHHHHHHHHHhcCccccCCCChhhcCCCCCcccccHHHHHHHHHHHHHHHHhcCCCccCCccccCc-chhhHhhHHH
Confidence 99999999999999999999999999987 2 589999998 899999999 9999999999
Q ss_pred hhhhh----hhHHHHHHHHHHHHHhhcccc
Q 003041 318 ANVLL----GMVWKIVTWEAVLAFVALEGG 343 (854)
Q Consensus 318 ~~~~~----~~~~~ila~E~~~a~~al~~~ 343 (854)
+||++ +|+++|+|||+++|+||+|+|
T Consensus 463 aArk~~~~ven~~~vlAiEll~a~QAidlr 492 (547)
T 3unv_A 463 AARRVREQLKNLKYVFSFELLCACQAVDIR 492 (547)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99997 779999999999999999998
No 2
>1gkm_A Histidase, HAL, histidine ammonia-lyase; histidine degradation; HET: MDO; 1.0A {Pseudomonas putida} SCOP: a.127.1.2 PDB: 1b8f_A* 1gkj_A* 1eb4_A* 1gk3_A 1gk2_A
Probab=100.00 E-value=1.8e-79 Score=695.64 Aligned_cols=309 Identities=21% Similarity=0.179 Sum_probs=280.6
Q ss_pred cceeeeecC---ceeEEecchhhhhhhcCCCCCCCCCcceee-ccCCcccchhhhHHHHHHHHHHHhcCCCcch-hHHHH
Q 003041 22 SSVYAISNG---LAQVRVDSSALDRLSSTLPNQNPPPVTKFQ-IPIPKTLTLEESRAFLTVLLNKLLLGSSIRT-AFAVL 96 (854)
Q Consensus 22 ~~vygi~tG---~a~~~i~~~~~~~lq~~~~~~~~~~~~~~h-~gvg~~l~~~~vRa~m~~rln~l~~G~SG~~-~~~~l 96 (854)
.+||||||| +++++|+++++++||+|++ +|| ||||++||+++|||||++|+|+|++|+||++ .+++.
T Consensus 50 ~~vYGvnTGfG~~~~~~I~~~~~~~lQ~nLi--------~sha~GvG~~l~~~~vRa~m~~RlnsL~~G~SGVr~evv~~ 121 (507)
T 1gkm_A 50 RTAYGINTGFGLLASTRIASHDLENLQRSLV--------LSHAAGIGAPLDDDLVRLIMVLKINSLSRGFSGIRRKVIDA 121 (507)
T ss_dssp CCCTTTTBCSGGGTTCBCCHHHHHHHHHHHH--------HHHCCCEEEECCHHHHHHHHHHHHHHHTTSCSCCCHHHHHH
T ss_pred CceeeeccCCCcccCcccCHHHHHHHHHHHH--------HHHhccCCCCCCHHHHHHHHHHHHHHHccCcCcCcHHHHHH
Confidence 469999999 6999999999999999999 999 9999999999999999999999999999944 46555
Q ss_pred HH---------Hhhcccccce------ec----------------------------ceeeecccceeeeeccCcchhhh
Q 003041 97 IS---------ETLNSQTETL------QF----------------------------ESVDVTEDERIVLEKLSLPSVLS 133 (854)
Q Consensus 97 ~~---------~~~~~g~~~~------~~----------------------------~p~~l~~ke~~~l~~~~~~~~~~ 133 (854)
+. .+|.+||||- |+ +|+.|++|||.+|.| + |++|+
T Consensus 122 l~~~LN~~i~P~VP~~GSvGGDLapLahial~LiGeg~v~~~G~~~~a~eaL~~~Gl~P~~L~~KEGLALiN-G-T~~~t 199 (507)
T 1gkm_A 122 LIALVNAEVYPHIPLKGSVGXDLAPLAHMSLVLLGEGKARYKGQWLSATEALAVAGLEPLTLAAKEGLALLN-G-TQAST 199 (507)
T ss_dssp HHHHHHHTEEECCEEECCCCCSHHHHHHHHHGGGTCSEEEETTEEEEHHHHHHHTTCCCCCCCTTHHHHHHS-B-SHHHH
T ss_pred HHHHHHCCCcccCCCCCCcchhhHHHHHHHHHHcCCCceeECCEEeeHHHHHHHcCCCCCCCCcchhHHhhc-C-cHHHH
Confidence 54 4666666641 21 699999999744333 3 67999
Q ss_pred chhhhccccchhhhHHHHHHHhhccccccCcccccccccCCCCccccccccccccceeee-cCceeeee-------eccc
Q 003041 134 GICAVLDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDGFTAKEEIGVAGDLKVLL-NGSKLVGK-------MKSE 205 (854)
Q Consensus 134 a~~~l~~~~a~~l~~~a~~~~Als~eal~g~~~~f~~~~~~~~rph~gq~~~A~~~r~lL-~gs~~~~~-------~D~y 205 (854)
|+++++++++++|+++||+++|||+||++|+++||||++ |++||||||+++|++||.+| +||+++.+ ||||
T Consensus 200 a~a~lal~~a~~L~~~a~~~~Als~Eal~G~~~~fd~~i-~~~Rph~GQ~~~A~~lr~lL~~gS~l~~~~~~~~~vQD~Y 278 (507)
T 1gkm_A 200 AYALRGLFYAEDLYAAAIACGGLSVEAVLGSRSPFDARI-HEARGQRGQIDTAACFRDLLGDSSEVSLSHKNADKVQDPY 278 (507)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSGGGCHHH-HHHHCCHHHHHHHHHHHHHHCSCCHHHHHTTTGGGSCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhCHHH-HHhccCchHHHHHHHHHHHHHcCChhhhccCCCCcCcCCc
Confidence 999999999999999999999999999999999999998 59999999999999999999 99998764 4999
Q ss_pred cccccccccchHHHHHHHhhccceEEecccce----ec---c--ccc---hhhHhhhHHHHHHHHHhhcccchhhhcccc
Q 003041 206 DILEIPKINGKLREVVKSVHSSTRVELNSSVK----VG---I--SGT---AKAVGANALALAAAIHNLGESSLYRAKMNL 273 (854)
Q Consensus 206 slRc~Pqv~Ga~~d~l~~~~~~~~~ElNs~~~----~~---~--~~~---~~~~~~~~d~l~~a~~~l~~~serr~~~l~ 273 (854)
||||+|||||+++|+++++++++++||||++| |+ + ||| |+++++++|+|++|++++|++||||+++|+
T Consensus 279 SlRc~PQv~Ga~~d~l~~a~~~le~ElNS~tDNPli~~~~~~v~sgGNFhg~~va~a~D~l~iAla~l~~iserR~~~L~ 358 (507)
T 1gkm_A 279 SLRCQPQVMGACLTQLRQAAEVLGIEANAVSDNPLVFAAEGDVISGGNFHAEPVAMAADNLALAIAEIGSLSERRISLMM 358 (507)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHTCCCCSSEEETTTTEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCCccccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999998 32 2 555 888899999999999999999999999999
Q ss_pred cccCccccccccccc-----------------CCCchhhhh---HHHHhhhccchhhHHHHHHHhhhhh----hhHHHHH
Q 003041 274 NSINSDGLRSLFEKD-----------------CSSGDNLRK---TYKLVLDANFEEDYVKFLHEANVLL----GMVWKIV 329 (854)
Q Consensus 274 ~~~~~~gLp~fL~~~-----------------~~~~~~l~~---~~~~~~s~~~~edh~s~~~~~~~~~----~~~~~il 329 (854)
||.+| |||+||+++ ++|||.|++ +||+|||++ ||||||||+.+||++ +|+++|+
T Consensus 359 d~~~s-gLP~fL~~~~glnsGfmi~q~taaal~sE~k~La~PaSvds~pts~~-qED~vSmg~~aArk~~~~v~n~~~vl 436 (507)
T 1gkm_A 359 DKHMS-QLPPFLVENGGVNSGFMIAQVTAAALASENKALSHPHSVDSLPTSAN-QEDHVSMAPAAGKRLWEMAENTRGVL 436 (507)
T ss_dssp CHHHH-SSCGGGCSSTTTCCTTHHHHHHHHHHHHHHHHHTSCSTTCCCCBTTT-TBCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCccc-CCChhhcCCCCcCccchHHHHHHHHHHHHHHHhcCCcccCCccccCc-cccccccHHHHHHHHHHHHHHHHHHH
Confidence 99988 999999972 689999998 899999999 999999999999997 7799999
Q ss_pred HHHHHHHHhhcccc
Q 003041 330 TWEAVLAFVALEGG 343 (854)
Q Consensus 330 a~E~~~a~~al~~~ 343 (854)
|||+++|+||+|++
T Consensus 437 AiEll~a~QAidlr 450 (507)
T 1gkm_A 437 AIEWLGACQGLDLR 450 (507)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999998
No 3
>2qve_A Tyrosine aminomutase; MIO, enediyne, transferase; HET: MDO 247; 2.00A {Streptomyces globisporus} PDB: 2rjr_A* 2rjs_A* 2ohy_A* 3kdz_A* 3kdy_A*
Probab=100.00 E-value=4.3e-78 Score=687.13 Aligned_cols=330 Identities=19% Similarity=0.210 Sum_probs=290.9
Q ss_pred cceeeeecC---ceeEEecchhhhhhhcCCCCCCCCCcceee-ccCCcccchhhhHHHHHHHHHHHhcCCCcch-hHHHH
Q 003041 22 SSVYAISNG---LAQVRVDSSALDRLSSTLPNQNPPPVTKFQ-IPIPKTLTLEESRAFLTVLLNKLLLGSSIRT-AFAVL 96 (854)
Q Consensus 22 ~~vygi~tG---~a~~~i~~~~~~~lq~~~~~~~~~~~~~~h-~gvg~~l~~~~vRa~m~~rln~l~~G~SG~~-~~~~l 96 (854)
.+||||||| +++++|+++++++||+|++ +|| ||||++||+++|||||++|+|+|++|+||++ .+++.
T Consensus 49 ~~vYGvnTGfG~~a~~~i~~~~~~~LQ~nLi--------~sha~GvG~~l~~~~vRa~m~~RlnsL~~G~SGVr~evve~ 120 (526)
T 2qve_A 49 IPIYGVTTGYGEMIYMQVDKSKEVELQTNLV--------RSHSAGVGPLFAEDEARAIVAARLNTLAKGHSAVRPIILER 120 (526)
T ss_dssp CCCTTTSBCSGGGGGEEECGGGHHHHHHHHH--------HHTCCCEEEECCHHHHHHHHHHHHHHHTTSCSCCCHHHHHH
T ss_pred CceeeeccCCCcccCCCcCHHHHHHHHHHHH--------HHHhccCCCCCCHHHHHHHHHHHHHHHccCcCCCcHHHHHH
Confidence 479999999 6999999999999999999 999 9999999999999999999999999999944 45555
Q ss_pred H---------HHhhcccccce------ec----------------------------ceeeecccceeeeeccCcchhhh
Q 003041 97 I---------SETLNSQTETL------QF----------------------------ESVDVTEDERIVLEKLSLPSVLS 133 (854)
Q Consensus 97 ~---------~~~~~~g~~~~------~~----------------------------~p~~l~~ke~~~l~~~~~~~~~~ 133 (854)
+ |.+|.+||||+ |+ +|+.|++|||++|.| + |++|+
T Consensus 121 l~~~LN~~i~P~VP~~GSvGADLaPLahial~LiGeg~v~~~G~~~~a~eaL~~~Gl~P~~L~~KEGLALiN-G-T~~~t 198 (526)
T 2qve_A 121 LAQYLNEGITPAIPEIGSLGXDLAPLSHVASTLIGEGYVLRDGRPVETAQVLAERGIEPLELRFKEGLALIN-G-TSGMT 198 (526)
T ss_dssp HHHHHHTTCEECCEEECCCSSCHHHHHHHHHHHTTCSEEEETTEEEEHHHHHHTTTCCCCCCCTTHHHHHHS-S-SHHHH
T ss_pred HHHHHhCCCccccCCCCCcchhhHHHHHHHHHHcCCCceeECCEeecHHHHHHHcCCCCCCCCchHHHHHhc-C-ChHHH
Confidence 4 45677777765 22 699999999744433 3 67999
Q ss_pred chhhhccccchhhhHHHHHHHhhccccccCcccccccccCCCC-ccccccccccccceeeecCceeeee-----------
Q 003041 134 GICAVLDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDG-FTAKEEIGVAGDLKVLLNGSKLVGK----------- 201 (854)
Q Consensus 134 a~~~l~~~~a~~l~~~a~~~~Als~eal~g~~~~f~~~~~~~~-rph~gq~~~A~~~r~lL~gs~~~~~----------- 201 (854)
|+++++++++++|+++|++++|||+||++|+++||||++ |++ ||||||+++|++||.+|+||+++.+
T Consensus 199 a~a~lal~~a~~L~~~a~~~~Als~Eal~G~~~~fd~~i-h~~~Rph~GQ~~~A~~lr~lL~gS~l~~~~~~~~~~~~~~ 277 (526)
T 2qve_A 199 GLGSLVVGRALEQAQQAEIVTALLIEAVRGSTSPFLAEG-HDIARPHEGQIDTAANMRALMRGSGLTVEHADLRRELQKD 277 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBSGGGCGGG-TTTTCCCHHHHHHHHHHHHHHTTCSSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhCHHH-HhccCCCchHHHHHHHHHHHhccCcccccchhhhcccccc
Confidence 999999999999999999999999999999999999998 599 9999999999999999999998753
Q ss_pred --------------eccccccccccccchHHHHHHHhhccceEEecccceec------c--ccc---hhhHhhhHHHHHH
Q 003041 202 --------------MKSEDILEIPKINGKLREVVKSVHSSTRVELNSSVKVG------I--SGT---AKAVGANALALAA 256 (854)
Q Consensus 202 --------------~D~yslRc~Pqv~Ga~~d~l~~~~~~~~~ElNs~~~~~------~--~~~---~~~~~~~~d~l~~ 256 (854)
||||||||+||||||++|+++++++++++||||++|.| + ||| |++++++||+|++
T Consensus 278 ~~~~~~~~~~~~~vQD~YSlRc~PQv~Ga~~d~l~~a~~~le~ElNS~tDNPli~~~~~v~sgGNFhg~~va~a~D~l~i 357 (526)
T 2qve_A 278 KEAGKDVQRSEIYLQKAYSLRAIPQVVGAVRDTLYHARHKLRIELNSANDNPLFFEGKEIFHGANFHGQPIAFAMDFVTI 357 (526)
T ss_dssp CCSSCSEECCSCCSSCCGGGTSHHHHHHHHHHHHHHHHHHHHHHHTSCCCSSBCCTTSCCBCSCTTCCHHHHHHHHHHHH
T ss_pred cccccccccccCcCcCCeeccchhhhhHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCceecCCCccchhHHHHHHHHHH
Confidence 49999999999999999999999999999999999832 2 555 8888999999999
Q ss_pred HHHhhcccchhhhcccccccCcccccccc-ccc-----------------CCCchhhhh--HHHHhhhccchhhHHHHHH
Q 003041 257 AIHNLGESSLYRAKMNLNSINSDGLRSLF-EKD-----------------CSSGDNLRK--TYKLVLDANFEEDYVKFLH 316 (854)
Q Consensus 257 a~~~l~~~serr~~~l~~~~~~~gLp~fL-~~~-----------------~~~~~~l~~--~~~~~~s~~~~edh~s~~~ 316 (854)
|++++|++||||+++|+||.+|+|||+|| +++ ++||+.|+- +||+|||++ ||||||||+
T Consensus 358 Ala~lg~lserR~~~L~d~~~~~gLP~fL~~~~~glnsGfm~~q~taaal~sE~k~LaPaSvds~pts~~-~ED~vSmg~ 436 (526)
T 2qve_A 358 ALTQLGVLAERQINRVLNRHLSYGLPEFLVSGDPGLHSGFAGAQYPATALVAENRTIGPASTQSVPSNGD-NQDVVSMGL 436 (526)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTSSSCCGGGCSSCBTTBCTTHHHHHHHHHHHHHHTTCCCSTTCCCCBTTT-TBCSCCCHH
T ss_pred HHHHHHHHHHHHHHHhcCcccccCCChhcCCCCCCcCcccHHHHHHHHHHHHHHHHhCCCccCCccccCC-CccccccHH
Confidence 99999999999999999999977999999 652 578888875 799999999 999999999
Q ss_pred Hhhhhh----hhHHHHHHHHHHHHHhhccccccccceecCCcceecchhhhhhccccccCcchhhHHHHHHH
Q 003041 317 EANVLL----GMVWKIVTWEAVLAFVALEGGELLGEKVNGGDVVVDKKSEKKKKKAVLGKGTGVIVQLIKDR 384 (854)
Q Consensus 317 ~~~~~~----~~~~~ila~E~~~a~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 384 (854)
.+||++ +|+++|+|||+++|+||+|++.. ...+|.+++-+...+.+.
T Consensus 437 ~aArk~~~~v~n~~~vlAiEll~a~QAidlr~~---------------------~~~~~~~~~~~~~~vR~~ 487 (526)
T 2qve_A 437 ISARNARRVLSNNNKILAVEYLAAAQAVDISGR---------------------FDGLSPAAKATYEAVRRL 487 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------GGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------------ccCCChhHHHHHHHHHHh
Confidence 999997 77999999999999999999820 001677777777666554
No 4
>2nyn_A Phenylalanine/histidine ammonia-lyase; methylidene imidazolone prosthetic group; HET: MDO; 1.90A {Anabaena variabilis} PDB: 3czo_A* 2nyf_A*
Probab=100.00 E-value=4.3e-78 Score=688.54 Aligned_cols=340 Identities=16% Similarity=0.160 Sum_probs=284.2
Q ss_pred cceeeeecC---ceeEEecchhhhhhhcCCCCCCCCCcceee-ccCCcccchhhhHHHHHHHHHHHhcCCCcch-hHHHH
Q 003041 22 SSVYAISNG---LAQVRVDSSALDRLSSTLPNQNPPPVTKFQ-IPIPKTLTLEESRAFLTVLLNKLLLGSSIRT-AFAVL 96 (854)
Q Consensus 22 ~~vygi~tG---~a~~~i~~~~~~~lq~~~~~~~~~~~~~~h-~gvg~~l~~~~vRa~m~~rln~l~~G~SG~~-~~~~l 96 (854)
.+||||||| +++++|+++++++||+|++ +|| ||||++||+++|||||++|+|+|++||||++ .+++.
T Consensus 75 ~~vYGvnTGfG~~a~~~I~~~~~~~LQ~nLi--------rsHa~GvG~~l~~~~vRa~mllRlnsL~~G~SGVr~evve~ 146 (565)
T 2nyn_A 75 EPIYGVTSGFGGMANVAISREQASELQTNLV--------WFLKTGAGNKLPLADVRAAMLLRANSHMRGASGIRLELIKR 146 (565)
T ss_dssp -----------------CCSHHHHHHHHHHH--------HHTCCCEEEECCHHHHHHHHHHHHHHHTTSCSCCCHHHHHH
T ss_pred CceeeeccCCCcccCcccCHHHHHHHHHHHH--------HHHhccCCCCCCHHHHHHHHHHHHHHHccCcCCCcHHHHHH
Confidence 369999999 7999999999999999999 999 9999999999999999999999999999944 45554
Q ss_pred H---------HHhhcccccce------ec-------------------------------ceeeecccceeeeeccCcch
Q 003041 97 I---------SETLNSQTETL------QF-------------------------------ESVDVTEDERIVLEKLSLPS 130 (854)
Q Consensus 97 ~---------~~~~~~g~~~~------~~-------------------------------~p~~l~~ke~~~l~~~~~~~ 130 (854)
+ |.+|.+||||+ |+ +|+.|++|||++|.| + |+
T Consensus 147 L~~lLN~~i~P~VP~~GSVGADLaPLAhial~LiGeg~~~~v~~~G~~~~a~eaL~~aGl~Pl~L~~KEGLALiN-G-T~ 224 (565)
T 2nyn_A 147 MEIFLNAGVTPYVYEFGSIGXDLVPLSYITGSLIGLDPSFKVDFNGKEMDAPTALRQLNLSPLTLLPKEGLAMMN-G-TS 224 (565)
T ss_dssp HHHHHHHTEEECCEEESCCSSCHHHHHHHHHHHTTCCTTSEEEETTEEEEHHHHHHHTTCCCCCCCTTHHHHHHS-S-SH
T ss_pred HHHHHhCCCccccCCCCCccchHHHHHHHHHHHhCCCCCceEEECCEEeeHHHHHHHcCCCCccCCCchhhhhhc-C-Ch
Confidence 4 46777888875 21 699999999744433 3 67
Q ss_pred hhhchhhhccccchhhhHHHHHHHhhccccccCcccccccccCCCCccccccccccccceeeecCceeeee---------
Q 003041 131 VLSGICAVLDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDGFTAKEEIGVAGDLKVLLNGSKLVGK--------- 201 (854)
Q Consensus 131 ~~~a~~~l~~~~a~~l~~~a~~~~Als~eal~g~~~~f~~~~~~~~rph~gq~~~A~~~r~lL~gs~~~~~--------- 201 (854)
+|+|+++++++++++|+++|++++|||+||++|+++||||++ |++||||||+++|++||.+|+||+++.+
T Consensus 225 ~~ta~a~lal~~a~~L~~~A~~~~Als~Eal~G~~~~fd~~i-h~~Rph~GQ~~~A~~ir~lL~gS~l~~~~~~~~~~~~ 303 (565)
T 2nyn_A 225 VMTGIAANCVYDTQILTAIAMGVHALDIQALNGTNQSFHPFI-HNSKPHPGQLWAADQMISLLANSQLVRDELDGKHDYR 303 (565)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBSGGGCHHH-HHTSCCHHHHHHHHHHHHHHTTCSSSBCCTTCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhCHHH-HHhCCCchHHHHHHHHHHHhccCcccccccccccccc
Confidence 999999999999999999999999999999999999999998 5999999999999999999999999775
Q ss_pred -----eccccccccccccchHHHHHHHhhccceEEecccce----ecc-----ccc---hhhHhhhHHHHHHHHHhhccc
Q 003041 202 -----MKSEDILEIPKINGKLREVVKSVHSSTRVELNSSVK----VGI-----SGT---AKAVGANALALAAAIHNLGES 264 (854)
Q Consensus 202 -----~D~yslRc~Pqv~Ga~~d~l~~~~~~~~~ElNs~~~----~~~-----~~~---~~~~~~~~d~l~~a~~~l~~~ 264 (854)
||||||||+||||||++|+|+++++++++||||++| |++ ||| |+++++++|+|++|++++|++
T Consensus 304 ~~~~vQD~YSlRc~PQv~Ga~~d~l~~a~~~le~ElNS~tDNPlI~~~~g~v~sgGNFhg~~va~a~D~l~iAla~lg~l 383 (565)
T 2nyn_A 304 DHELIQDRYSLRCLPQYLGPIVDGISQIAKQIEIEINSVTDNPLIDVDNQASYHGGNFLGQYVGMGMDHLRYYIGLLAKH 383 (565)
T ss_dssp ----CCSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHTSCCSSSEEEGGGTEEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCcCCcccccchhhhHHHHHHHHHHHHHHHHHHhcCCCCCeEeCCCCeeccCCCccchhHHHHHHHHHHHHHHHHHH
Confidence 499999999999999999999999999999999998 322 555 888899999999999999999
Q ss_pred chhhhcccccccCccccccccccc-------------------CCCchhhhh----HHHHhhhccchhhHHHHHHHhhhh
Q 003041 265 SLYRAKMNLNSINSDGLRSLFEKD-------------------CSSGDNLRK----TYKLVLDANFEEDYVKFLHEANVL 321 (854)
Q Consensus 265 serr~~~l~~~~~~~gLp~fL~~~-------------------~~~~~~l~~----~~~~~~s~~~~edh~s~~~~~~~~ 321 (854)
||||+++|+||.+|+|||+||+++ ++||+.|++ +||+|||++ ||||||||+.+||+
T Consensus 384 serR~~~Lvdp~~s~GLP~fL~~~~~~glnsGfmi~q~taaal~sE~k~La~P~aSvds~pts~~-qED~vSmg~~aArk 462 (565)
T 2nyn_A 384 LDVQIALLASPEFSNGLPPSLLGNRERKVNMGLKGLQICGNSIMPLLTFYGNSIADRFPTHAEQF-NQNINSQGYTSATL 462 (565)
T ss_dssp HHHHHHHHHCTTTTTSCCGGGCSCTTSTTCCTTHHHHHHHHHHHHHHHHHTSCCGGGCCTTTTTT-TCSSCCCHHHHHHH
T ss_pred HHHHHHHhcCCcccCCCChhhcCCCCCCcccchHHHHHHHHHHHHHHHHhcCCCeecccccccCC-CccccccHHHHHHH
Confidence 999999999999988999999863 477888886 789999999 99999999999999
Q ss_pred h----hhHHHHHHHHHHHHHhhccccccccceecCCcceecchhhhhhccccccCcchhhHHHHHHHhc
Q 003041 322 L----GMVWKIVTWEAVLAFVALEGGELLGEKVNGGDVVVDKKSEKKKKKAVLGKGTGVIVQLIKDRLQ 386 (854)
Q Consensus 322 ~----~~~~~ila~E~~~a~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 386 (854)
+ +|+++|+|||+++|+||+|++..+. .++ ++ ++..+|.+++-+...+.+.+-
T Consensus 463 ~~~~v~n~~~vlAiEll~a~QAidlr~~~~---~~~------~~----~~~~~~~~~~~~~~~vR~~vp 518 (565)
T 2nyn_A 463 ARRSVDIFQNYVAIALMFGVQAVDLRTYKK---TGH------YD----ARACLSPATERLYSAVRHVVG 518 (565)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HSS------CC----GGGTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccc---ccc------cc----ccccCChhHHHHHHHHHHhCC
Confidence 7 7799999999999999999983210 011 01 123378888878877776543
No 5
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=100.00 E-value=9.5e-76 Score=685.64 Aligned_cols=427 Identities=57% Similarity=0.941 Sum_probs=376.6
Q ss_pred ccCCCCCCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhhhccCCceeeecc
Q 003041 426 ESRRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYD 505 (854)
Q Consensus 426 ~~~~~~~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D~~G~~l~LRpD 505 (854)
+.+++.|.|+||+||+|.++.+|++|+++++++|++|||++|.||+||+.++|.+++|++.+.||+|.|++|+.++||||
T Consensus 62 ~~~~~l~~P~G~~D~lP~~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~ge~~~~my~f~D~~g~~l~LRPd 141 (517)
T 4g85_A 62 KQKFVLKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQGGELLSLRYD 141 (517)
T ss_dssp CCCCCCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC------CSCBBCCTTSCCEEECSC
T ss_pred ccceeeeCCCCCCccCHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccCcCcceeEEEECCCCCEEEeCCc
Confidence 45788999999999999999999999999999999999999999999999999988998888999999999999999999
Q ss_pred cccchhhhhhhccccchhhhhhhhhhcccCC--CCccccccccccccccccccccCCChhhHHHHHHHhhhcCCCcceee
Q 003041 506 LTVPFARYVAMNGLTSFKRHQIAKVYRRDNP--SKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIGDYEIK 583 (854)
Q Consensus 506 lT~~~aR~~a~~~~~p~K~y~ig~VfR~e~p--~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~Lgl~~~~i~ 583 (854)
+|+|+||++++|+..|+|+||+|+|||+|+| ++||+|||+|+|+||||..++..+|+|+|.++.++|+.||++++.++
T Consensus 142 ~T~~~aR~~~~~~~~p~k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~lgl~~~~i~ 221 (517)
T 4g85_A 142 LTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQIGDFLVK 221 (517)
T ss_dssp SHHHHHHHHHHTTCSCEEEEEEEEEECCCC-------CCEEEEEEEEEESCCCTTHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_pred CcHHHHHHHHhCCCCCceeEEEeceEeccCcccccCccceeeeeceeccCCccchHHHHHHHHHHHHHHHhhcCCccccc
Confidence 9999999999999999999999999999998 56999999999999999866656799999999999999999999999
Q ss_pred echhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHHHHHHHhcCcceeecccccccccccCChHHHHHHHhhhcch
Q 003041 584 LNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSL 663 (854)
Q Consensus 584 Lnh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~gl~~~~~~~L~~l~~~~g~~~~vl~~l~~~~~~ 663 (854)
|||+++++++++.||++++.++.++..++++++..|+++..++....+++++..+.+..+....|++ +.++.+... ..
T Consensus 222 in~~~~l~~~~~~~~~~~~~~~~~~~~ld~ldk~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~-~~~~~~~~~-~~ 299 (517)
T 4g85_A 222 VNDRRILDGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGV-SLVEQLLQD-PK 299 (517)
T ss_dssp EEEHHHHHHHHHHHTCCHHHHHHHHHHHHTTTTSCHHHHHHHHHHHTCCCHHHHHHHHHHHHCCBSH-HHHHHHHHC-HH
T ss_pred ccchhhHHHHHHhhcchHHHHHHHHHHHhhhcchhHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCc-hHHHHHHhc-cc
Confidence 9999999999999999999999999999999999999999999888899988888888888888886 555555432 12
Q ss_pred hhcccccccccchHHHHHHHhhhccccceeeeeccccccCccccc--------------------ccccccCCccccccc
Q 003041 664 FLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG--------------------VGSIAAGGRYDNLIG 723 (854)
Q Consensus 664 ~~~~~~~~~al~~L~~l~~~l~~~gv~~~I~~D~sl~rgl~YYtG--------------------~~~Ia~GGRYD~Li~ 723 (854)
+..+....+++++|+.++++++.+|+..+|.||++++||++|||| .++|++|||||+|++
T Consensus 300 ~~~~~~~~~~l~~l~~l~~~l~~~g~~~~i~~d~~lvrgldYYtG~vFE~~~~~~~~~~~~~~~~~~~i~~GGRYD~Lv~ 379 (517)
T 4g85_A 300 LSQNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAAGGRYDGLVG 379 (517)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHHHTCGGGEEECTTCCCCTTTCSSEEEEEEEC-------------CCSEEEEECHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhCCCcceeeccccccCCcccCCeEEEEEECCcccccccCCcccceecCCCchhHHHH
Confidence 333444567889999999999999998899999999999999999 037999999999999
Q ss_pred cc--CCcccCccceehhhHHHHHHHHHHHHhhhhccccchhhhhhhhcCC-CccchHHHHHHHhhhccceeeeeh--hhH
Q 003041 724 MF--GTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVH--KKV 798 (854)
Q Consensus 724 ~f--g~~~~pAvGfsigieRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~~--~~l 798 (854)
.| +++++|||||++|+|||+.+|.++.......|.+.+++|+|++.++ ...++++++++||++||+|++++. .++
T Consensus 380 ~f~~~G~~~pavGfa~gierl~~~le~~~~~~~~~~~~~~~~V~v~~~~~~~~~~a~~l~~~Lr~~Gi~ve~~~~~~~~l 459 (517)
T 4g85_A 380 MFDPKGRKVPCVGLSIGVERIFSIVEQRLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKKNPKL 459 (517)
T ss_dssp TTSSSCCCCCEEEEEECHHHHHHHHHHHHHHTTCCCCSCCCCEEEEESSSSCHHHHHHHHHHHHHTTCCEEECSSSSCCH
T ss_pred HhccCCCCCCcccccchHHHHHHHHHHhccccCccccCCCCEEEEEeCCHHHHHHHHHHHHHHHHCCCcEEEEeCCCCCH
Confidence 99 4678999999999999999998765433333445689999999987 678899999999999999999873 469
Q ss_pred HHHHhhhhcCCCceEEEeecccccccceeeeccccchhhhcchhhhHHHHHHhhcC
Q 003041 799 MKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 854 (854)
Q Consensus 799 ~k~l~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~~ 854 (854)
++++++|++.|+||+||||++|+++|+|+|||+.+++|.+|+++||+++|++++.|
T Consensus 460 ~~q~k~A~~~g~~~~viiG~~E~~~g~v~vK~l~tgeq~~v~~~elv~~lk~~l~~ 515 (517)
T 4g85_A 460 LNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRRTGQ 515 (517)
T ss_dssp HHHHHHHHHHCCCEEEEECHHHHHTTEEEEEETTTCCEEEEEHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHCCCCEEEEECChhHhCCEEEEEECCCCCeEEeeHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999998864
No 6
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=100.00 E-value=3.4e-75 Score=673.22 Aligned_cols=426 Identities=57% Similarity=0.939 Sum_probs=377.4
Q ss_pred cCCCCCCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhhhccCCceeeeccc
Q 003041 427 SRRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDL 506 (854)
Q Consensus 427 ~~~~~~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D~~G~~l~LRpDl 506 (854)
.+++.+.|+||+||+|.++.++++|+++++++|++|||++|.||+||+.++|.+++|++.++||+|.|++|+.++||||+
T Consensus 10 ~~~~~~~p~G~~D~lP~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g~~~~~~y~f~D~~g~~l~LRPd~ 89 (464)
T 4g84_A 10 RQFVLKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQGGELLSLRYDL 89 (464)
T ss_dssp ---CCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC----CCCBBCCCSSCCEEECSCS
T ss_pred hccceeCCCCcCccCHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccCcCcceeEEEECCCCCEEEeCCcC
Confidence 45778999999999999999999999999999999999999999999999999889988889999999999999999999
Q ss_pred ccchhhhhhhccccchhhhhhhhhhcccCC--CCccccccccccccccccccccCCChhhHHHHHHHhhhcCCCcceeee
Q 003041 507 TVPFARYVAMNGLTSFKRHQIAKVYRRDNP--SKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIGDYEIKL 584 (854)
Q Consensus 507 T~~~aR~~a~~~~~p~K~y~ig~VfR~e~p--~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~Lgl~~~~i~L 584 (854)
|+|++|++++|+..|+|+||+|+|||+|+| ++||+|||+|+|+|+||..++..+|+|+|.++.++|+.||++++.++|
T Consensus 90 T~~~aR~~~~~~~~p~k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~lgl~~~~i~i 169 (464)
T 4g84_A 90 TVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQIGDFLVKV 169 (464)
T ss_dssp HHHHHHHHHHTTCSCEEEEEEEEEECCCC------CCSEEEEEEEEEESCCSTTHHHHHHHHHHHHHHHHHTCCCEEEEE
T ss_pred cHHHHHHHHhcCCCCceeEEEecceeccCCccccCccceeeecceeccCCccchhhHHHHHHHHHHHHHHhCCCCcceee
Confidence 999999999999999999999999999998 568999999999999997666557999999999999999999999999
Q ss_pred chhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHHHHHHHhcCcceeecccccccccccCChHHHHHHHhhhcchh
Q 003041 585 NHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLF 664 (854)
Q Consensus 585 nh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~gl~~~~~~~L~~l~~~~g~~~~vl~~l~~~~~~~ 664 (854)
||+++++++++.|+++++.++.++..++++++..++++..++....+++++..+.+..++...|+. +.++.+... ..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~-~~~~~~~~~-~~~ 247 (464)
T 4g84_A 170 NDRRILDGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGV-SLVEQLLQD-PKL 247 (464)
T ss_dssp EEHHHHHHHHHHHTCCHHHHHHHHHHHGGGGTSCHHHHHHHHHHTTCCCHHHHHHHHHHHTCEESH-HHHHHHTTC-HHH
T ss_pred cchhhHHHHHHhhcCcHHHHHHHHHHHHHhchhhHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCc-hHHHHHHhc-ccc
Confidence 999999999999999999999999999999999999998899888899988888888888888876 555555432 123
Q ss_pred hcccccccccchHHHHHHHhhhccccceeeeeccccccCccccc------------c--------cccccCCcccccccc
Q 003041 665 LENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG------------V--------GSIAAGGRYDNLIGM 724 (854)
Q Consensus 665 ~~~~~~~~al~~L~~l~~~l~~~gv~~~I~~D~sl~rgl~YYtG------------~--------~~Ia~GGRYD~Li~~ 724 (854)
..+....+++++|+.++++++.+|+..+|.||++++||++|||| . ++|++|||||+|++.
T Consensus 248 ~~~~~~~~~l~~l~~l~~~l~~~g~~~~i~~d~~lvrgldYYtG~vFe~~~~~~~~~~~~~~~~~~~i~~GGRYD~L~~~ 327 (464)
T 4g84_A 248 SQNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAAGGRYDGLVGM 327 (464)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHTTCGGGEEEETTCCCCTTTCSSEEEEEEEEECC-------EEEEEEEEEEECCSTGGG
T ss_pred cccHHHHHHHHHHHHHHhHHHhhCCCcceeecccccCCCcCcCCeEEEEEECCcccccccCCcccceeccCCchhHHHHH
Confidence 33444567889999999999999998899999999999999999 0 379999999999999
Q ss_pred cC--CcccCccceehhhHHHHHHHHHHHHhhhhccccchhhhhhhhcCC-CccchHHHHHHHhhhccceeeeeh--hhHH
Q 003041 725 FG--TKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVH--KKVM 799 (854)
Q Consensus 725 fg--~~~~pAvGfsigieRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~~--~~l~ 799 (854)
|+ +++.|||||++|+|||+.+|.++.....+.|.+.+++|+|++.++ ...++++++++||++||+|++++. .+++
T Consensus 328 ~~~~g~~~pavGfaigieRl~~~l~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~a~~l~~~Lr~~Gi~ve~~~~~~~~l~ 407 (464)
T 4g84_A 328 FDPKGRKVPCVGLSIGVERIFSIVEQRLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKKNPKLL 407 (464)
T ss_dssp TSTTCCCCCEEEEEECHHHHHHHHHHHHHTTTCCCCSCCCCEEEECSSSSCHHHHHHHHHHHHHTTCCEECCSCSSCCHH
T ss_pred hccCCCCCCCccccccHHHHHHHHHHhccccCcccccccceEEEEeCCHHHHHHHHHHHHHHHHCCCcEEEEeCCCCCHH
Confidence 94 678999999999999999998866544444566788999999887 678899999999999999999863 4699
Q ss_pred HHHhhhhcCCCceEEEeecccccccceeeeccccchhhhcchhhhHHHHHHhhcC
Q 003041 800 KLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 854 (854)
Q Consensus 800 k~l~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~~ 854 (854)
+++++|++.|++|+||||++|+++|+|+|||+.+++|.+|+++|++++|++++.|
T Consensus 408 ~q~k~A~~~g~~~~viiG~~E~~~g~v~vK~l~tgeq~~v~~~elv~~lk~~l~~ 462 (464)
T 4g84_A 408 NQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRRTGQ 462 (464)
T ss_dssp HHHHHHHHHTCCEEEECCHHHHHHTEEEEEETTTCCEEEEEGGGHHHHHHHHHTC
T ss_pred HHHHHHHHCCCCEEEEECchhhhCCEEEEEECCCCCeEEeeHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999998865
No 7
>2o6y_A Putative histidine ammonia-lyase; methylidene imidazolone prosthetic group; HET: MDO; 1.50A {Rhodobacter sphaeroides} PDB: 2o7b_A* 2o7d_A* 2o7e_A* 2o78_A* 2o7f_A*
Probab=100.00 E-value=3.7e-77 Score=678.79 Aligned_cols=310 Identities=18% Similarity=0.164 Sum_probs=280.1
Q ss_pred cceeeeecC---ceeEEecchhhhhhhcCCCCCCCCCcceee-ccCCcccchhhhHHHHHHHHHHHhcCCCcch-hHHHH
Q 003041 22 SSVYAISNG---LAQVRVDSSALDRLSSTLPNQNPPPVTKFQ-IPIPKTLTLEESRAFLTVLLNKLLLGSSIRT-AFAVL 96 (854)
Q Consensus 22 ~~vygi~tG---~a~~~i~~~~~~~lq~~~~~~~~~~~~~~h-~gvg~~l~~~~vRa~m~~rln~l~~G~SG~~-~~~~l 96 (854)
.+||||||| +++++|+++++++||+|++ +|| ||||++||+++|||||++|+|+|++||||++ .+++.
T Consensus 57 ~~vYGvnTGfG~~~~~~i~~~~~~~lQ~nLi--------~sha~GvG~~l~~~~vRa~m~~RlnsL~~G~SGVr~evve~ 128 (521)
T 2o6y_A 57 RHVYGLTTGFGPLANRLISGENVRTLQANLV--------HHLASGVGPVLDWTTARAMVLARLVSIAQGASGASEGTIAR 128 (521)
T ss_dssp BCCTTTSBCSGGGGGBBCCGGGHHHHHHHHH--------HHHCCCEEEECCHHHHHHHHHHHHHHHTTSCSCCCHHHHHH
T ss_pred CCcceecCCCCcccCccCCHHHHHHHHHHHH--------HHHhccCCCCCCHHHHHHHHHHHHHHHccCCCcCcHHHHHH
Confidence 479999999 7999999999999999999 999 9999999999999999999999999999944 46555
Q ss_pred H---------HHhhcccccce------ec-----------------------------ceeeecccceeeeeccCcchhh
Q 003041 97 I---------SETLNSQTETL------QF-----------------------------ESVDVTEDERIVLEKLSLPSVL 132 (854)
Q Consensus 97 ~---------~~~~~~g~~~~------~~-----------------------------~p~~l~~ke~~~l~~~~~~~~~ 132 (854)
+ |.+|.+||||+ |+ +|+.|++|||++|.| +|++|
T Consensus 129 l~~~LN~~i~P~VP~~GSvGADLaPLahial~LiGeg~v~~~~G~~~~a~eaL~~aGl~P~~L~~KEGLALiN--GT~~~ 206 (521)
T 2o6y_A 129 LIDLLNSELAPAVPSRGTVGXDLTPLAHMVLCLQGRGDFLDRDGTRLDGAEGLRRGRLQPLDLSHRDALALVN--GTSAM 206 (521)
T ss_dssp HHHHHTSSCEECCEEECCCSSCHHHHHHHHHHHTTSSCEECTTCCEECHHHHHHHTTCCCCCCTTSCGGGTSC--TTHHH
T ss_pred HHHHHhCCCcccCCCCCCcccchHHHHHHHHHHcCCCceEeeCCEEecHHHHHHHcCCCCCCCCcchHHHhhc--CChHH
Confidence 5 45666777765 21 699999999744433 36799
Q ss_pred hchhhhccccchhhhHHHHHHHhhccccccCcccccccccCCCCccccccccccccceeeecCceeeee-----------
Q 003041 133 SGICAVLDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDGFTAKEEIGVAGDLKVLLNGSKLVGK----------- 201 (854)
Q Consensus 133 ~a~~~l~~~~a~~l~~~a~~~~Als~eal~g~~~~f~~~~~~~~rph~gq~~~A~~~r~lL~gs~~~~~----------- 201 (854)
+|+++++++++++|+++||+++|||+||++|+++||||++ |++||||||+++|++||.+|+||+++.+
T Consensus 207 ta~a~lal~~a~~L~~~a~~~~Als~Eal~G~~~~fd~~i-h~~Rph~GQ~~~A~~ir~lL~gS~l~~~~~~~~~~~~~~ 285 (521)
T 2o6y_A 207 TGIALVNAHACRHLGNWAVALTALLAECLRGRTEAWAAAL-SDLRPHPGQKDAAARLRARVDGSARVVRHVIAERRLDAG 285 (521)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBGGGGCHHH-HHHSCCHHHHHHHHHHHHHTTTCSSSBCCCGGGCBCCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhCHHH-HhcCCCchHHHHHHHHHHHhccCcccccccccccccccc
Confidence 9999999999999999999999999999999999999998 5999999999999999999999998642
Q ss_pred ---------eccccccccccccchHHHHHHHhhccceEEecccce---e---c--c--ccc---hhhHhhhHHHHHHHHH
Q 003041 202 ---------MKSEDILEIPKINGKLREVVKSVHSSTRVELNSSVK---V---G--I--SGT---AKAVGANALALAAAIH 259 (854)
Q Consensus 202 ---------~D~yslRc~Pqv~Ga~~d~l~~~~~~~~~ElNs~~~---~---~--~--~~~---~~~~~~~~d~l~~a~~ 259 (854)
||||||||+|||||+++|+|+++++++++||||++| | + + ||| |+++++++|+|++|++
T Consensus 286 ~~~~~~~~vQD~YSlRc~PQv~Ga~~d~l~~a~~~l~~ElNS~tDNPl~~~~~~~~v~sgGNFhg~~va~a~D~l~iAla 365 (521)
T 2o6y_A 286 DIGTEPEAGQDAYSLRCAPQVLGAGFDTLAWHDRVLTIELNAVTDNPVFPPDGSVPALHGGNFMGQHVALTSDALATAVT 365 (521)
T ss_dssp GCSBCSSCSSCCHHHHTHHHHHHHHHHHHHHHHHHHHHHHTSCCCSSBCCTTCSSSCBCCCTTCCHHHHHHHHHHHHHHH
T ss_pred ccccccCcCcCcccccchhhhhHHHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCceeccCCCccchhHHHHHHHHHHHHH
Confidence 499999999999999999999999999999999998 3 3 3 444 7888999999999999
Q ss_pred hhcccchhhhcccccccCcccccccc-ccc-----------------CCCchhhhh--HHHHhhhccchhhHHHHHHHhh
Q 003041 260 NLGESSLYRAKMNLNSINSDGLRSLF-EKD-----------------CSSGDNLRK--TYKLVLDANFEEDYVKFLHEAN 319 (854)
Q Consensus 260 ~l~~~serr~~~l~~~~~~~gLp~fL-~~~-----------------~~~~~~l~~--~~~~~~s~~~~edh~s~~~~~~ 319 (854)
++|++||||+++|+||.+|.|||+|| +++ ++||+.|+- +||+|||++ ||||||||+.+|
T Consensus 366 ~l~~iserR~~~L~~~~~~~gLP~fL~~~~~glnsGfm~~q~taaal~sE~k~LaPaS~ds~pts~~-~ED~vSmg~~aA 444 (521)
T 2o6y_A 366 VLAGLAERQIARLTDERLNRGLPPFLHRGPAGLNSGFMGAQVTATALLAEMRATGPASIHSISTNAA-NQDVVSLGTIAA 444 (521)
T ss_dssp HHHHHHHHHHHHHTCTTTTTTCCGGGCCSSBTTBCTTHHHHHHHHHHHHHHHTBCCSGGGCCCBTTT-TBCSCCCHHHHH
T ss_pred HHHHHHHHHHHHhcCcccccCCChhcCCCCCCcccchHHHHHHHHHHHHHHHHhCCCccCcccccCC-ccchhhhHHHHH
Confidence 99999999999999999988999999 652 578888875 899999999 999999999999
Q ss_pred hhh----hhHHHHHHHHHHHHHhhcccc
Q 003041 320 VLL----GMVWKIVTWEAVLAFVALEGG 343 (854)
Q Consensus 320 ~~~----~~~~~ila~E~~~a~~al~~~ 343 (854)
|++ +|+++|+|||+++|+||+|++
T Consensus 445 rk~~~~v~n~~~vlAiell~a~QAidlr 472 (521)
T 2o6y_A 445 RLCREKIDRWAEILAILALCLAQAAELR 472 (521)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 997 779999999999999999998
No 8
>1w27_A Phenylalanine ammonia-lyase 1; phenylpropanoid metabolism, MIO; HET: MDO; 1.7A {Petroselinum crispum} SCOP: a.127.1.2
Probab=100.00 E-value=8.6e-76 Score=680.69 Aligned_cols=309 Identities=19% Similarity=0.168 Sum_probs=275.3
Q ss_pred cceeeeecC---ceeEEecchhhhhhhcCCCCCCCCCcceee-ccC-Cc----ccchhhhHHHHHHHHHHHhcCCCcch-
Q 003041 22 SSVYAISNG---LAQVRVDSSALDRLSSTLPNQNPPPVTKFQ-IPI-PK----TLTLEESRAFLTVLLNKLLLGSSIRT- 91 (854)
Q Consensus 22 ~~vygi~tG---~a~~~i~~~~~~~lq~~~~~~~~~~~~~~h-~gv-g~----~l~~~~vRa~m~~rln~l~~G~SG~~- 91 (854)
.+||||||| ++++++ +++.+||+|++ +|| ||| |+ +||+++|||||++|+|+|++||||++
T Consensus 107 ~~VYGVnTGFG~la~~~~--~~~~~LQ~nLi--------rsHa~Gv~G~~~~~~lp~~~vRA~MllRlnsL~~G~SGVr~ 176 (714)
T 1w27_A 107 TDSYGVTTGFGATSHRRT--KQGGALQKELI--------RFLNAGIFGNGSDNTLPHSATRAAMLVRINTLLQGYSGIRF 176 (714)
T ss_dssp TTSCSCCCSSCTTSCSSS--SSCSHHHHHHH--------HHHCCCCCCSSSTTBCCHHHHHHHHHHHHHTTTTSCSCCCH
T ss_pred CeeccccCCCCCcccccH--HHHHHHHHHHH--------HHHhCCcCCCCCCCCCCHHHHHHHHHHHHHHHccCCCCCCH
Confidence 368999998 677776 77889999999 999 999 98 99999999999999999999999944
Q ss_pred hHHHHH---------HHhhcccccce------ec-------------------------------c--eeeecccceeee
Q 003041 92 AFAVLI---------SETLNSQTETL------QF-------------------------------E--SVDVTEDERIVL 123 (854)
Q Consensus 92 ~~~~l~---------~~~~~~g~~~~------~~-------------------------------~--p~~l~~ke~~~l 123 (854)
.+++.| |.+|.+||||- |+ + |+.|++|||++|
T Consensus 177 evve~L~~lLN~gi~P~VP~~GSVGGDLaPLAhial~LiGeg~~~~v~~~G~~~~a~eAL~~aGl~~~Pl~L~~KEGLAL 256 (714)
T 1w27_A 177 EILEAITKFLNQNITPCLPLRGTITXDLVPLSYIAGLLTGRPNSKAVGPTGVILSPEEAFKLAGVEGGFFELQPKEGLAL 256 (714)
T ss_dssp HHHHHHHHHHHTTCEECCBSSCCCSSCHHHHHHHHHHHTTCTTCCEECTTSCEECHHHHHHHHTCSSSCCCCCTTHHHHH
T ss_pred HHHHHHHHHHhCCCccccCCCCCccccchHHHHHHHHHhCCCcccccccCCccccHHHHHHHcCCCCCCCCCCCcchhhh
Confidence 465555 45666666641 11 4 999999997444
Q ss_pred eccCcchhhhchhhhccccchhhhHHHHHHHhhccccccCcccccccccCCCCccccccccccccceeeecCceeeee--
Q 003041 124 EKLSLPSVLSGICAVLDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDGFTAKEEIGVAGDLKVLLNGSKLVGK-- 201 (854)
Q Consensus 124 ~~~~~~~~~~a~~~l~~~~a~~l~~~a~~~~Als~eal~g~~~~f~~~~~~~~rph~gq~~~A~~~r~lL~gs~~~~~-- 201 (854)
.| + |++|+|++++++++|++|+++|++++|||+||++|+++||||++ |++||||||+++|++||.+|+||+++.+
T Consensus 257 iN-G-Ta~~ta~aalal~~a~~L~~~A~v~~Als~Eal~G~~~~fd~~i-h~~RpHpGQ~~~A~~ir~lL~gS~l~~~~~ 333 (714)
T 1w27_A 257 VN-G-TAVGSGMASMVLFEANILAVLAEVMSAIFAEVMQGKPEFTDHLT-HKLKHHPGQIEAAAIMEHILDGSAYVKAAQ 333 (714)
T ss_dssp HS-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGGCHHH-HHTTCCHHHHHHHHHHHHHHHTCSSCCCCC
T ss_pred hc-C-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhhChHH-HhhCCChhHHHHHHHHHHHhCccchhhhcc
Confidence 33 3 67999999999999999999999999999999999999999998 5999999999999999999999998432
Q ss_pred ------------eccccccccccccchHHHHHHHhhccceEEeccccee----c---c--ccc---hhhHhhhHHHHHHH
Q 003041 202 ------------MKSEDILEIPKINGKLREVVKSVHSSTRVELNSSVKV----G---I--SGT---AKAVGANALALAAA 257 (854)
Q Consensus 202 ------------~D~yslRc~Pqv~Ga~~d~l~~~~~~~~~ElNs~~~~----~---~--~~~---~~~~~~~~d~l~~a 257 (854)
||||||||+||||||++|+|++++++|++||||++|. + + ||| |++++++||+|++|
T Consensus 334 ~~~~~~~~~~rvQD~YSlRc~PQV~Ga~~d~l~~a~~~le~ElNS~tDNPlI~~~~g~v~sGGNFhg~pvA~AmD~L~iA 413 (714)
T 1w27_A 334 KLHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRSSTKMIEREINSVNDNPLIDVSRNKAIHGGNFQGTPIGVSMDNTRLA 413 (714)
T ss_dssp SSCSSCCCCSSSCCCHHHHTHHHHHHHHHHHHHHHHHHHHHHTTSCCCSSEEETTTTEEECCCTTCCHHHHHHHHHHHHH
T ss_pred cccccCcccCcCcCcceecchhhhhHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCCceeeCCCccchHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999983 2 2 555 88889999999999
Q ss_pred HHhhcccchhhhcccccccCcccccccccc----c---------------CCCchhhhh---HHHHhhhccchhhHHHHH
Q 003041 258 IHNLGESSLYRAKMNLNSINSDGLRSLFEK----D---------------CSSGDNLRK---TYKLVLDANFEEDYVKFL 315 (854)
Q Consensus 258 ~~~l~~~serr~~~l~~~~~~~gLp~fL~~----~---------------~~~~~~l~~---~~~~~~s~~~~edh~s~~ 315 (854)
++++|+|||||+++|+||.+|+|||+||++ | ++||+.|++ +|++|||++ ||||||||
T Consensus 414 la~lg~lserR~~~Lvdp~~~~GLP~fL~~~~~~glnsGfmi~Q~taAal~sEnk~LA~PaSvds~pts~~-qEDhvSmg 492 (714)
T 1w27_A 414 IAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQH-NQDVNSLG 492 (714)
T ss_dssp HHHHHHHHHHHHHHHTCTTTSTTCCGGGCCSSCGGGCCTTHHHHHHHHHHHHHHHHHTSCSTTCCCCBTTT-TBSSCCCH
T ss_pred HHHHHHHHHHHHHHhcCcccccCCChhhcCCCCCCcccchHHHHHHHHHHHHHHHHhcCCCccCCccccCC-cccccccH
Confidence 999999999999999999998899999974 2 689999998 899999999 99999999
Q ss_pred HHhhhhh----hhHHHHHHHHHHHHHhhccccc
Q 003041 316 HEANVLL----GMVWKIVTWEAVLAFVALEGGE 344 (854)
Q Consensus 316 ~~~~~~~----~~~~~ila~E~~~a~~al~~~~ 344 (854)
+.+||++ +|+++|+|||+++|+||+|+|.
T Consensus 493 ~~aArk~~~~venl~~vlAiELl~a~QAiDlR~ 525 (714)
T 1w27_A 493 LISSRKTSEAVEILKLMSTTFLVGLCQAIDLRH 525 (714)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999997 7799999999999999999984
No 9
>2yii_A Phenylalanine ammonia-lyase; HET: MDO; 2.18A {Taxus wallichiana var} PDB: 3nz4_A*
Probab=100.00 E-value=6e-75 Score=672.87 Aligned_cols=309 Identities=15% Similarity=0.141 Sum_probs=276.3
Q ss_pred cceeeeecC---ceeEEecchhhhhhhcCCCCCCCCCcceee-ccCC--------cccchhhhHHHHHHHHHHHhcCCCc
Q 003041 22 SSVYAISNG---LAQVRVDSSALDRLSSTLPNQNPPPVTKFQ-IPIP--------KTLTLEESRAFLTVLLNKLLLGSSI 89 (854)
Q Consensus 22 ~~vygi~tG---~a~~~i~~~~~~~lq~~~~~~~~~~~~~~h-~gvg--------~~l~~~~vRa~m~~rln~l~~G~SG 89 (854)
.+||||||| +++++| +++.+||+|++ +|| |||| ++||+++|||||++|+|+|++|+||
T Consensus 97 ~~VYGVnTGFG~la~~~~--~~~~~LQ~nLi--------rsHa~GvG~~G~~~~~~~lp~~~vRa~MllRlnsL~~G~SG 166 (705)
T 2yii_A 97 ADIYGVTTGFGACSSRRT--NRLSELQESLI--------RCLLAGVFTKGCAPSVDELPATATRSAMLLRLNSFTYGCSG 166 (705)
T ss_dssp CCCTTTSBCCGGGTTCBC--SCHHHHHHHHH--------HHHCCCCCCC-----CCCBCHHHHHHHHHHHHHHHTTSCSC
T ss_pred CeeeeeecCCCccccccH--HHHHHHHHHHH--------HHHhcCccCCCCccCCCCCCHHHHHHHHHHHHHHHccCCCC
Confidence 479999999 688887 88999999999 999 9998 9999999999999999999999999
Q ss_pred ch-hHHHHHHH---------hhccccc-c-----eec-------------------------------ceeeecccceee
Q 003041 90 RT-AFAVLISE---------TLNSQTE-T-----LQF-------------------------------ESVDVTEDERIV 122 (854)
Q Consensus 90 ~~-~~~~l~~~---------~~~~g~~-~-----~~~-------------------------------~p~~l~~ke~~~ 122 (854)
++ .+++.|.+ +|.+||| | +|+ +|+.|++|||++
T Consensus 167 Vr~evve~L~~lLN~~I~P~VP~~GSVSGDLaPLAhial~LiGeG~v~~~~~~G~~~~a~eAL~~aGl~Pl~L~~KEGLA 246 (705)
T 2yii_A 167 IRWEVMEALEKLLNSNVSPKVPLRGSVSXDLIPLAYIAGLLIGKPSVIARIGDDVEVPAPEALSRVGLRPFKLQAKEGLA 246 (705)
T ss_dssp CCHHHHHHHHHHHHTTEEECBCSCCCCSSCHHHHHHHHHHHTTCTTCEEEESSSCEEEHHHHHHHTTCCCCCCCTTHHHH
T ss_pred CCHHHHHHHHHHHhCCCccccCCCCCcccchhHHHHHHHHHhCCCCeeeeccCCEEeeHHHHHHHcCCCCccCCcchHHH
Confidence 44 56666544 5556665 0 011 599999999744
Q ss_pred eeccCcchhhhchhhhccccchhhhHHHHHHHhhccccccCcccccccccCCCCccccccccccccceeeecCceeee--
Q 003041 123 LEKLSLPSVLSGICAVLDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDGFTAKEEIGVAGDLKVLLNGSKLVG-- 200 (854)
Q Consensus 123 l~~~~~~~~~~a~~~l~~~~a~~l~~~a~~~~Als~eal~g~~~~f~~~~~~~~rph~gq~~~A~~~r~lL~gs~~~~-- 200 (854)
|.| + |++|+|++++++++|++|+++|++++|||+||++|+++||||++ |++||||||+++|++||.+|+||+++.
T Consensus 247 LiN-G-Ta~~ta~aalal~~a~~L~~~A~~~~Als~Eal~G~~~~fd~~i-h~~RpHpGQ~~~A~~ir~lL~gS~l~~~~ 323 (705)
T 2yii_A 247 LVN-G-TSFATAVASTVMYDANVLLLLVETLCGMFCEVIFGREEFAHPLI-HKVKPHPGQIESAELLEWLLRSSPFQELS 323 (705)
T ss_dssp HHS-S-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGGCHHH-HHTSCCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHc-C-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchHHhhHHH-HhcCCChhHHHHHHHHHHHhCcCcchhhh
Confidence 433 3 67999999999999999999999999999999999999999998 599999999999999999999999842
Q ss_pred ------------eeccccccccccccchHHHHHHHhhccceEEeccccee----cc-----ccc---hhhHhhhHHHHHH
Q 003041 201 ------------KMKSEDILEIPKINGKLREVVKSVHSSTRVELNSSVKV----GI-----SGT---AKAVGANALALAA 256 (854)
Q Consensus 201 ------------~~D~yslRc~Pqv~Ga~~d~l~~~~~~~~~ElNs~~~~----~~-----~~~---~~~~~~~~d~l~~ 256 (854)
-||||||||+||||||++|+|+++++++++||||++|. ++ ||| |++++++||+|++
T Consensus 324 ~~~~~~~~~~~rvQDpYSlRc~PQV~Ga~~d~l~~a~~~le~ElNS~tDNPlI~~~~g~v~sGGNFhg~pvalamD~L~i 403 (705)
T 2yii_A 324 REYYSIDKLKKPKQDRYALRSSPQWLAPLVQTIRDATTTVETEVNSANDNPIIDHANDRALHGANFQGSAVGFYMDYVRI 403 (705)
T ss_dssp HHHHHTTGGGSCSSCCHHHHTHHHHHHHHHHHHHHHHHHHHHHHTSCCCSSEEEGGGTEEECCCTTCCHHHHHHHHHHHH
T ss_pred hhccccccccCcCcCCceeechhhhhHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCCccccCCCccchhHHHHHHHHHH
Confidence 15999999999999999999999999999999999983 22 555 8888999999999
Q ss_pred HHHhhcccchhhhcccccccCcccccccccc----c---------------CCCchhhhh---HHHHhhhccchhhHHHH
Q 003041 257 AIHNLGESSLYRAKMNLNSINSDGLRSLFEK----D---------------CSSGDNLRK---TYKLVLDANFEEDYVKF 314 (854)
Q Consensus 257 a~~~l~~~serr~~~l~~~~~~~gLp~fL~~----~---------------~~~~~~l~~---~~~~~~s~~~~edh~s~ 314 (854)
|++++|+|||||+++|+||.+|+|||+||++ | ++||+.|++ +|++|||++ |||||||
T Consensus 404 Ala~lg~lserR~~~Lvdp~~n~GLP~fL~~~~~~GlnsGfmi~Q~taAal~sEnk~LA~PaSvds~pts~~-qED~vSm 482 (705)
T 2yii_A 404 AVAGLGKLLFAQFTELMIEYYSNGLPGNLSLGPDLSVDYGLKGLDIAMAAYSSELQYLANPVTTHVHSAEQH-NQDINSL 482 (705)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTTTTCCGGGCCCSSGGGCCTTHHHHHHHHHHHHHHHHHTSCSGGGCCCBTTT-TBSSCCC
T ss_pred HHHHHHHHHHHHHHHhcCcccccCCChhhcCCCCCCcccchHHHHHHHHHHHHHHHHhcCCCccCCcccccC-ccccccc
Confidence 9999999999999999999998899999974 2 689999998 899999999 9999999
Q ss_pred HHHhhhhh----hhHHHHHHHHHHHHHhhccccc
Q 003041 315 LHEANVLL----GMVWKIVTWEAVLAFVALEGGE 344 (854)
Q Consensus 315 ~~~~~~~~----~~~~~ila~E~~~a~~al~~~~ 344 (854)
|+.+||++ +|+++|+|||+++|+||+|+|.
T Consensus 483 g~~aArk~~~~venl~~vlAiELl~a~QAidlR~ 516 (705)
T 2yii_A 483 ALISARKTEEALDILKLMIASHLTAMCQAVDLRQ 516 (705)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999997 7799999999999999999984
No 10
>1y2m_A Phenylalanine ammonia-lyase; alpha helices; HET: MSE; 1.60A {Rhodosporidium toruloides} PDB: 1t6j_A* 1t6p_A*
Probab=100.00 E-value=6.6e-75 Score=674.81 Aligned_cols=308 Identities=19% Similarity=0.192 Sum_probs=266.3
Q ss_pred ceeeeecC---ceeEEecchhhhhhhcCCCCCCCCCcceee-ccCCc--------------ccchhhhHHHHHHHHHHHh
Q 003041 23 SVYAISNG---LAQVRVDSSALDRLSSTLPNQNPPPVTKFQ-IPIPK--------------TLTLEESRAFLTVLLNKLL 84 (854)
Q Consensus 23 ~vygi~tG---~a~~~i~~~~~~~lq~~~~~~~~~~~~~~h-~gvg~--------------~l~~~~vRa~m~~rln~l~ 84 (854)
+||||||| +++++| ++..+||+|++ +|| ||||+ +||+++|||||++|+|+|+
T Consensus 108 ~vYGVnTGfG~~a~~~i--~~~~~LQ~nLi--------rsHa~GvG~~~~~~~~~~~~~~~~lp~~~vRa~MllRlnsL~ 177 (716)
T 1y2m_A 108 SVYGVTTGFGGSADTRT--EDAISLQKALL--------EHQLCGVLPSSFDSFRLGRGLENSLPLEVVRGAMTIRVNSLT 177 (716)
T ss_dssp ----------------C--HHHHHHHHHHH--------HHHCCCCCCSCGGGCBTTBSCTTBCCHHHHHHHHHHHHHHHT
T ss_pred CCCccccCCCcccCcch--hHHHHHHHHHH--------HHHhcCCCCCccccccccccccCCCCHHHHHHHHHHHHHHHc
Confidence 79999999 789999 88999999999 999 99999 9999999999999999999
Q ss_pred cCCCcch-hHHHHH---------HHhhcccccce--------ec----------------------------------ce
Q 003041 85 LGSSIRT-AFAVLI---------SETLNSQTETL--------QF----------------------------------ES 112 (854)
Q Consensus 85 ~G~SG~~-~~~~l~---------~~~~~~g~~~~--------~~----------------------------------~p 112 (854)
+||||++ .+++.| |.+|.+||||+ |+ +|
T Consensus 178 ~G~SGVr~evle~L~~lLN~~i~P~VP~~GSVGASGDLaPLAhial~LiGeg~v~~~~~~~~~G~~~~a~eAL~~aGl~P 257 (716)
T 1y2m_A 178 RGHSAVRLVVLEALTNFLNHGITPIVPLRGTISASGDLSPLSYIAAAISGHPDSKVHVVHEGKEKILYAREAMALFNLEP 257 (716)
T ss_dssp TSSSCCCHHHHHHHHHHHHTTCEECCBSSCCCC-CBSHHHHHHHHHHHTTCTTCEEEEEETTEEEEEEHHHHHHHTTCCC
T ss_pred cCCCCCCHHHHHHHHHHHhCCCeeccCCCCCCCccccHHHHHHHHHHHcCCCCeEEecccCCCCeEeeHHHHHHHcCCCC
Confidence 9999944 455554 45666777764 11 59
Q ss_pred eeecccceeeeeccCcchhhhchhhhccccchhhhHHHHHHHhhccccccCcccccccccCCCC-cccccccccccccee
Q 003041 113 VDVTEDERIVLEKLSLPSVLSGICAVLDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDG-FTAKEEIGVAGDLKV 191 (854)
Q Consensus 113 ~~l~~ke~~~l~~~~~~~~~~a~~~l~~~~a~~l~~~a~~~~Als~eal~g~~~~f~~~~~~~~-rph~gq~~~A~~~r~ 191 (854)
+.|++|||++|.| + |++|+|++++++++|++|+++|++++|||+||++|+++||||++ |++ ||||||+++|++||.
T Consensus 258 l~L~~KEGLALiN-G-Ta~~ta~aalal~~a~~L~~~A~~~~Als~Eal~G~~~~fd~~i-h~~~RpHpGQ~~~A~~ir~ 334 (716)
T 1y2m_A 258 VVLGPKEGLGLVN-G-TAVSASMATLALHDAHMLSLLSQSLTAMTVEAMVGHAGSFHPFL-HDVTRPHPTQIEVAGNIRK 334 (716)
T ss_dssp CCCCTTHHHHHHS-B-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBGGGGCGGG-TTTTSCCHHHHHHHHHHHH
T ss_pred ccCCCchhHHhhc-C-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhCHHH-HhccCCCchHHHHHHHHHH
Confidence 9999999744433 3 67999999999999999999999999999999999999999998 599 999999999999999
Q ss_pred eecCceeeee---------------eccccccccccccchHHHHHHHhhccceEEe-ccccee----c---c--ccc---
Q 003041 192 LLNGSKLVGK---------------MKSEDILEIPKINGKLREVVKSVHSSTRVEL-NSSVKV----G---I--SGT--- 243 (854)
Q Consensus 192 lL~gs~~~~~---------------~D~yslRc~Pqv~Ga~~d~l~~~~~~~~~El-Ns~~~~----~---~--~~~--- 243 (854)
+|+||+++.+ ||||||||+||||||++|+|+++++++++|| ||++|. + + |||
T Consensus 335 lL~gS~l~~~~~~~~~~~~~~~~~vQD~YSlRc~PQv~Ga~~d~l~~a~~~le~El~NS~tDNPlI~~~~g~v~sGGNFh 414 (716)
T 1y2m_A 335 LLEGSRFAVHHEEEVKVKDDEGILRQDRYPLRTSPQWLGPLVSDLIHAHAVLTIEAGQSTTDNPLIDVENKTSHHGGNFQ 414 (716)
T ss_dssp HHTTCSSSBCHHHHC----CCCCCCSCCHHHHTHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSSEEETTTTEEECCCTTC
T ss_pred HhccCcchhhhhhhcccccccCCcCcCccchhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCeeeCCCCeeecCCCcc
Confidence 9999998764 4999999999999999999999999999999 999983 2 2 555
Q ss_pred hhhHhhhHHHHHHHHHhhcccchhhhcccccccCccccccccccc------------------CCCchhhhh---HHHHh
Q 003041 244 AKAVGANALALAAAIHNLGESSLYRAKMNLNSINSDGLRSLFEKD------------------CSSGDNLRK---TYKLV 302 (854)
Q Consensus 244 ~~~~~~~~d~l~~a~~~l~~~serr~~~l~~~~~~~gLp~fL~~~------------------~~~~~~l~~---~~~~~ 302 (854)
|++++++||+|++|++++|+|||||+++|+||.+|.|||+||+.+ ++||+.|++ +|++|
T Consensus 415 g~~va~amD~l~iAla~lg~lserR~~~Lvnp~~~~GLP~fL~~~~~glnsG~m~~q~taAal~sE~k~LA~PaSvds~p 494 (716)
T 1y2m_A 415 AAAVANTMEKTRLGLAQIGKLNFTQLTEMLNAGMNRGLPSCLAAEDPSLSYHCKGLDIAAAAYTSELGHLANPVTTHVQP 494 (716)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTSTTCCGGGCSSCGGGCCTTHHHHHHHHHHHHHHHHHTSCSGGGCCC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCChhhCCCCCCcCcchHHHHHHHHHHHHHHHHhcCCCcccccc
Confidence 888899999999999999999999999999999988999999752 688999998 89999
Q ss_pred hhccchhhHHHHHHHhhhhh----hhHHHHHHHHHHHHHhhccccc
Q 003041 303 LDANFEEDYVKFLHEANVLL----GMVWKIVTWEAVLAFVALEGGE 344 (854)
Q Consensus 303 ~s~~~~edh~s~~~~~~~~~----~~~~~ila~E~~~a~~al~~~~ 344 (854)
||++ ||||||||+.+||++ +|+++|+|||+++||||+|+|.
T Consensus 495 ts~~-~ED~vSmg~~aArk~~~~venl~~vlAiEll~a~QAidlR~ 539 (716)
T 1y2m_A 495 AEMA-NQAVNSLALISARRTTESNDVLSLLLATHLYCVLQAIDLRA 539 (716)
T ss_dssp BTTT-TBSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccc-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999 999999999999997 7799999999999999999984
No 11
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=100.00 E-value=3.6e-72 Score=646.17 Aligned_cols=415 Identities=30% Similarity=0.519 Sum_probs=356.3
Q ss_pred CCCCCCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchh-hhhhhhc-----------
Q 003041 428 RRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKL-IYDLADQ----------- 495 (854)
Q Consensus 428 ~~~~~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~-~y~~~D~----------- 495 (854)
+..+++|+||+||+|.++..++++++.++++|++|||++|.||+||+.++|.++ |+..++ ||+|.|+
T Consensus 9 ~~~~~~p~G~~D~lP~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~-G~~~ke~m~~~~d~~~~g~~~~~~~ 87 (465)
T 3net_A 9 KINFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAK-GNQGDNIIYGLEPILPPNRQAEKDK 87 (465)
T ss_dssp CCCCSCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGG-GCC--CBEEEEEEEC----------
T ss_pred cccccCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhcc-CCCCccceEEEeccccccccccccc
Confidence 456899999999999999999999999999999999999999999999999887 765678 9999999
Q ss_pred ----cCCceeeecccccchhhhhhhcc---ccchhhhhhhhhhcccCCCCccccccccccccccccccccCC--ChhhHH
Q 003041 496 ----GGELCSLRYDLTVPFARYVAMNG---LTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGP--DFEVVK 566 (854)
Q Consensus 496 ----~G~~l~LRpDlT~~~aR~~a~~~---~~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~a--DaEvI~ 566 (854)
+|+.++||||+|+|++|+++++. ..|+|+||+|+|||+|+|+.||+|||+|+|+|+||..+ +.+ |+|+|.
T Consensus 88 ~~~~~g~~l~LRpd~T~~~aR~~~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~Ref~Q~g~ei~G~~~-~~a~~DaEvi~ 166 (465)
T 3net_A 88 SGDTGSEARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREK-LSLLYDAQMPA 166 (465)
T ss_dssp ------CCEEECSCSHHHHHHHHHHHGGGSCSSEEEEECCEEECBC------CCEEEEEEEEEECSSC-CCHHHHHHHHH
T ss_pred ccCCCCCEEEeCCCChHHHHHHHHhcccccCCCeEEEEeccEEecCCCCCCCcceeEEeeEEEECCCC-ccchhhHHHHH
Confidence 38999999999999999999864 46999999999999999999999999999999999854 578 999999
Q ss_pred HHHHHhhhcCCCcceeeechhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHHHHHHHhcCcceeecccccccccc
Q 003041 567 ILTELLNELDIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKE 646 (854)
Q Consensus 567 l~~eil~~Lgl~~~~i~Lnh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~gl~~~~~~~L~~l~~~ 646 (854)
++.++|+.||++++.|+|||+++++++++.||++++.+..++.+|+++++..|++++.+|. ..+++.+..+.+..++.+
T Consensus 167 l~~~~l~~lgl~~~~i~in~~~~l~~~l~~~g~~~~~~~~~~~~ld~~~~~~~~~~~~~l~-~~~l~~~~~~~l~~l~~~ 245 (465)
T 3net_A 167 IITEIFEAVNIGDFVIRINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELE-KEGINPEQTQKIIDFVKI 245 (465)
T ss_dssp HHHHHHHHHTCSCEEEEEEEHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCceEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHhccccCHHHHHHHHH-hcCCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999888889999999999999998877765 588998889999999999
Q ss_pred cCChHHHHHHHhhhcchhhcccccccccchHHHHHHHhhhccccce----eeeeccccccCccccc------------cc
Q 003041 647 RGSPLVLLSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDK----VVFDLSLARGLDYYTG------------VG 710 (854)
Q Consensus 647 ~g~~~~vl~~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~gv~~~----I~~D~sl~rgl~YYtG------------~~ 710 (854)
+|++.+++++++........++...+++++|+.++ |+.+ +..+ |+|||+++||++|||| .+
T Consensus 246 ~g~~~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~--l~~~-~~~~~~~~~~~D~~lvrgldYYtG~vFe~~~~~~~~~~ 322 (465)
T 3net_A 246 DGSVDDVLDKLKHLSQTLPESEQFNLGVSELETVI--TGVR-NLGVPDKRFCIDLAIARGLNYYTGTVYETTLIGHEALG 322 (465)
T ss_dssp CSCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH--HHHH-HTTCCGGGEEECTTCCCCSSSEEEEEEEEEETTCGGGC
T ss_pred cCChHHHHHHHHHhhhccccChHHHHHHHHHHHHH--HHHh-cccccCceEEEccCccCCCcccCceEEEEEECCCCccc
Confidence 99987888887642100023334567888999887 5555 4446 9999999999999999 24
Q ss_pred ccccCCccccccccc-CCcccCccceehhhHHHHHHHHHHHHhhhhccccchhhhhhhhcCC-CccchHHHHHHHhhhcc
Q 003041 711 SIAAGGRYDNLIGMF-GTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKV 788 (854)
Q Consensus 711 ~Ia~GGRYD~Li~~f-g~~~~pAvGfsigieRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI 788 (854)
+||+|||||+|++.| |++ .|||||++|+|||+.+|.+++. .+.+..+|++|+|++.++ ...++++++++||++||
T Consensus 323 ~i~~GGRYD~L~~~f~g~~-~pavGfaiGieRli~~L~e~g~--~p~~~~~p~~V~Vi~~~~~~~~~A~~la~~LR~~Gi 399 (465)
T 3net_A 323 SICSGGRYEELVGTFIGEK-MPGVGISIGLTRLISRLLKAGI--LNTLPPTPAQVVVVNMQDELMPTYLKVSQQLRQAGL 399 (465)
T ss_dssp CSSEEEEESSSSGGGTCSC-CCEEEEEEEHHHHHHHHHHTTS--SCCCCSCSCCEEECCSCGGGHHHHHHHHHHHHHTTC
T ss_pred eecccccHHHHhhhhcCCC-CceeeeeccHHHHHHHHHHcCC--CCCcCCCCCeEEEEEcCHHHHHHHHHHHHHHHHCCC
Confidence 899999999999966 765 9999999999999999987532 122123578999998876 56789999999999999
Q ss_pred ceeeeeh-hhHHHHHhhhhcCCCceEEEeeccccccc-ceeeeccccchhhhcchhhhHHHHHHhh
Q 003041 789 KAEYMVH-KKVMKLIDRARESKIPWMVIVGERELNEG-IVKLKNIDTTQEEVISRSNFVEEIQRRL 852 (854)
Q Consensus 789 ~ael~~~-~~l~k~l~~A~~~gi~~iviIg~~e~~~g-~V~Vk~l~~~~e~~v~~~elv~~L~~~l 852 (854)
+|++++. .++++++++|++.|+||+|+||++ +++| +|+||++.++++..|++++++++|++.+
T Consensus 400 ~ve~d~~~~sl~~q~k~A~~~g~p~~iiiG~~-~~~g~~V~vk~~~t~eq~~v~~~el~~~l~~~l 464 (465)
T 3net_A 400 NVITNFEKRQLGKQFQAADKQGIRFCVIIGAD-EAAAQKSSLKDLQSGEQVEVALADLAEEIKRRL 464 (465)
T ss_dssp CEEECCSCCCHHHHHHHHHHHTCCEEEECCHH-HHHTTCCEEEETTTTEEEECC-CCHHHHHHHTC
T ss_pred EEEEEeCCCCHHHHHHHHHHcCCCEEEEECch-hhcCCEEEEEECCCCceEEeeHHHHHHHHHHhc
Confidence 9999884 679999999999999999999999 8889 9999999999999999999999998765
No 12
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=100.00 E-value=3e-71 Score=634.89 Aligned_cols=400 Identities=27% Similarity=0.431 Sum_probs=338.5
Q ss_pred CCCCCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC-chhhhhhhhccCCceeeecccc
Q 003041 429 RLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED-SKLIYDLADQGGELCSLRYDLT 507 (854)
Q Consensus 429 ~~~~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~-~k~~y~~~D~~G~~l~LRpDlT 507 (854)
+..++|+|++||+|.++.+++++++.++++|++|||++|.||+||+.++|.+++|++ .++||+|.|++|+.++||||+|
T Consensus 27 ~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~~~~~my~f~D~~g~~l~LRpd~T 106 (456)
T 3lc0_A 27 VETEPVQGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEEITEQMFNFITKGGHRVALRPEMT 106 (456)
T ss_dssp CCCSCSTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCHHHHTCEEEECSSSCEEEECSCSH
T ss_pred ccccCCCCCcccCHhHHHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccchhhceEEEEcCCCCEEecCCcCH
Confidence 347999999999999999999999999999999999999999999999998877876 5889999999999999999999
Q ss_pred cchhhhhhhcc---ccchhhhhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhhhcCC--Cccee
Q 003041 508 VPFARYVAMNG---LTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDI--GDYEI 582 (854)
Q Consensus 508 ~~~aR~~a~~~---~~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~Lgl--~~~~i 582 (854)
+|++|+++++. ..|+|+||+|+|||+|+|+.||+|||+|+|+|+||..+ +.+|+|+|.++.++|+.||+ +++.|
T Consensus 107 ~~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~~~gR~ReF~Q~g~ei~G~~~-~~~DaEvi~l~~~~l~~lgl~~~~~~i 185 (456)
T 3lc0_A 107 PSLARLLLGKGRSLLLPAKWYSIPQCWRYEAITRGRRREHYQWNMDIVGVKS-VSAEVELVCAACWAMRSLGLSSKDVGI 185 (456)
T ss_dssp HHHHHHHHHSCTTCCSSEEEEECCEEECCCC-----CCEEEEEEEEEESCCS-THHHHHHHHHHHHHHHHTTCCTTTEEE
T ss_pred HHHHHHHHhcCcccCCCEEEEEeccEEecCCCCCCCccceEEEEEEEEcCCC-hHhhHHHHHHHHHHHHHcCCCCCceEE
Confidence 99999999874 35999999999999999999999999999999999864 46899999999999999999 78999
Q ss_pred eechhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHHHHHHHhcCcceeecccccccccccCChHHHHHHHhhhcc
Q 003041 583 KLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGS 662 (854)
Q Consensus 583 ~Lnh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~gl~~~~~~~L~~l~~~~g~~~~vl~~l~~~~~ 662 (854)
+|||+++++++++.||++++++..++..++++++.+|+++++.|. ..+++++.+++|..++.+. .. +++..
T Consensus 186 ~in~~~il~~~l~~~g~~~~~~~~v~~~idkl~~~~~~~~~~~L~-~~~l~~~~~~~l~~~~~~~-~~----~~l~~--- 256 (456)
T 3lc0_A 186 KVNSRKVLQTVVEQAGVTSDKFAPVCVIVDKMEKIPREEVEAQLA-VLGLEPTVVDAITTTLSLK-SI----DEIAQ--- 256 (456)
T ss_dssp EEEEHHHHHHHHHHTTCCGGGHHHHHHHHTTTTTSCHHHHHHHHH-HTTCCHHHHHHHHHHHTCC-SH----HHHHH---
T ss_pred EEcCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCHHHHHHHHH-HcCCCHHHHHHHHHHhccC-CH----HHHHH---
Confidence 999999999999999999999999999999999999999877664 4688888888877766543 22 22221
Q ss_pred hhhcccccccccchHHHHHHHhhhccccceeeeeccccccCccccc-----------ccccccCCcccccccccCCc-cc
Q 003041 663 LFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG-----------VGSIAAGGRYDNLIGMFGTK-QV 730 (854)
Q Consensus 663 ~~~~~~~~~~al~~L~~l~~~l~~~gv~~~I~~D~sl~rgl~YYtG-----------~~~Ia~GGRYD~Li~~fg~~-~~ 730 (854)
+... ..+++++|+.++++++.+|+..++.|||+++||++|||| .++||+|||||+|++.||++ +.
T Consensus 257 -~l~~--~~~~~~~L~~l~~~l~~~gi~~~~~~D~~lvRgldYYTG~vFE~~~~~g~~~~I~~GGRYD~Lv~~fg~~~~~ 333 (456)
T 3lc0_A 257 -RVGE--EHEAVKELRQFFEQVEAYGYGDWVLFDASVVRGLAYYTGIVFEGFDREGKFRALCGGGRYDNLLTTYGSPTPI 333 (456)
T ss_dssp -HHCT--TCHHHHHHHHHHHHHHHHTCGGGEEECTTCCCSCTTCCSEEEEEEETTSCSSCSEEEEECSSHHHHTTCSSCC
T ss_pred -HHhH--HHHHHHHHHHHHHHHHHcCCCceEEEecCccCCccccCCeEEEEEECCCCcceEeecccHHHHHHHhCCCCCC
Confidence 1111 235699999999999999998889999999999999999 24899999999999999987 79
Q ss_pred CccceehhhHHHHHHHHHHHHhhhhccccchhhhhhhhcCC-CccchHHHHHHHhhhccceeeeeh-hhHHHHHhhhhcC
Q 003041 731 PAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVH-KKVMKLIDRARES 808 (854)
Q Consensus 731 pAvGfsigieRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~~-~~l~k~l~~A~~~ 808 (854)
||||||+|+|||+.+|.+.+. ..|.+.+++|+|++.++ ...++++++++||++||+|++++. .++++++++|++.
T Consensus 334 PavGFaig~eRl~~~l~~~~~---~~~~~~~~~v~v~~~~~~~~~~a~~la~~LR~~Gi~ve~~~~~~slkkq~k~A~k~ 410 (456)
T 3lc0_A 334 PCAGFGFGDCVIVELLQEKRL---LPDIPHVVDDVVIPFDESMRPHALAVLRRLRDAGRSADIILDKKKVVQAFNYADRV 410 (456)
T ss_dssp CEEEEEEESSHHHHHHHHTTC---CCCCCCCEEEEEEESSGGGHHHHHHHHHHHHHTTCCEEECCSCCCHHHHHHHHHHT
T ss_pred CEEEEEeEHHHHHHHHHhcCC---CCccCCCCcEEEEEcCHHHHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHc
Confidence 999999999999999976321 12333467899998886 567899999999999999999984 5799999999999
Q ss_pred CCceEEEeecccccccceeeeccccchhhhcchhhh
Q 003041 809 KIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNF 844 (854)
Q Consensus 809 gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~el 844 (854)
|++|+||||++|+++|+|+|||+.+++|..++.++.
T Consensus 411 ga~~vviiGe~E~~~g~v~vK~l~tgeQ~~~~~~~~ 446 (456)
T 3lc0_A 411 GAVRAVLVAPEEWERGEVQVKMLREGTGKEEGGAER 446 (456)
T ss_dssp TEEEEEEECHHHHHTTEEEEEECC------------
T ss_pred CCCEEEEECCchhcCCeEEEEECCCCCeEEeccccc
Confidence 999999999999999999999999999988877654
No 13
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=100.00 E-value=3e-67 Score=601.65 Aligned_cols=406 Identities=25% Similarity=0.420 Sum_probs=357.8
Q ss_pred CCCCCCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC-chhhhhhhhccCCceeeeccc
Q 003041 428 RRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED-SKLIYDLADQGGELCSLRYDL 506 (854)
Q Consensus 428 ~~~~~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~-~k~~y~~~D~~G~~l~LRpDl 506 (854)
++..++|+|++||+|.++.++++|++.++++|++|||+||.||+|||.++|..++|+. .++||+|.|++|+.++||||+
T Consensus 3 ~~~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~~~em~~~~D~~g~~l~LrPd~ 82 (434)
T 1wu7_A 3 RLQIEKIRGFRDFYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDKGGREVTLIPEA 82 (434)
T ss_dssp CCCCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECTTSCEEEECSCS
T ss_pred ccccCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCCccccceEEEECCCCCEEEeCCCC
Confidence 4668999999999999999999999999999999999999999999999998777764 589999999999999999999
Q ss_pred ccchhhhhhhccc--cchhhhhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhhhcCCCc-ceee
Q 003041 507 TVPFARYVAMNGL--TSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIGD-YEIK 583 (854)
Q Consensus 507 T~~~aR~~a~~~~--~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~Lgl~~-~~i~ 583 (854)
|++++|++++++. .|+|+||+|+|||+|+|+.||+|||+|+|+|+||.++. .+|+|+|.++.++|+.||+++ |.++
T Consensus 83 t~~~aR~~~~~~~~~lP~rl~~~g~vfR~erp~~gR~REF~Q~d~ei~g~~~~-~ad~E~i~~~~~~l~~lgl~~~~~i~ 161 (434)
T 1wu7_A 83 TPSTVRMVTSRKDLQRPLRWYSFPKVWRYEEPQAGRYREHYQFNADIFGSDSP-EADAEVIALASSILDRLGLQDIYEIR 161 (434)
T ss_dssp HHHHHHHHTTCTTCCSSEEEEECCEEECCCCSCSSCCSEEEEEEEEEESCCSH-HHHHHHHHHHHHHHHHTTTTTSEEEE
T ss_pred hHHHHHHHHhcCCCCCCeEEEEEcCeecCCCCCCCCccceEEeeEEEEcCCCh-HhhHHHHHHHHHHHHHcCCCCceEEE
Confidence 9999999998753 79999999999999999999999999999999998654 469999999999999999977 9999
Q ss_pred echhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHHHHHHHhcCcceeecccccccccccCChHHHHHHHhhhcch
Q 003041 584 LNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSL 663 (854)
Q Consensus 584 Lnh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~gl~~~~~~~L~~l~~~~g~~~~vl~~l~~~~~~ 663 (854)
|||+++++++++.+| +++.. .++++++++++..|+++...+ +..+++....+.+..|+...|+..+ +++++
T Consensus 162 l~~~g~~~~~~~~~g-~~~~~-~l~~~l~~~~~~~~~~~~~~l-~~~~l~~~~~~~~~~~~~~~~~~~~-l~~~~----- 232 (434)
T 1wu7_A 162 INSRKIMEEIIGGMT-SSDPF-SVFSIIDRYHKISREEFVDQL-RSAGIGEDGVSMIADLCSGTRGIDE-MARIT----- 232 (434)
T ss_dssp EEEHHHHHHHHHTTC-SSCHH-HHHHHHHTTTTSCHHHHHHHH-HHTTCCHHHHHHHHHHHHSCBCHHH-HHHHT-----
T ss_pred ECChhhHHHHHHHhC-cHhHH-HHHHHHHHHhccchHHHHHHH-HhCCCCHHHHHHHHHHHHhCCCHHH-HHHHH-----
Confidence 999999999998777 66655 888899988888888775555 4567776666777777655565444 54443
Q ss_pred hhcccccccccchHHHHHHHhhhccccceeeeeccccccCccccc-----------ccccccCCcccccccccCCcccCc
Q 003041 664 FLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG-----------VGSIAAGGRYDNLIGMFGTKQVPA 732 (854)
Q Consensus 664 ~~~~~~~~~al~~L~~l~~~l~~~gv~~~I~~D~sl~rgl~YYtG-----------~~~Ia~GGRYD~Li~~fg~~~~pA 732 (854)
.....++++++++.++++.+|+. +|+||++++|+++|||| .++|++|||||+|++.|++++.|+
T Consensus 233 ----~~~~~~~~~l~~~~~~l~~~g~~-~i~~D~~l~rgldYYtg~vFe~~~~~g~~~~v~~GGRYD~li~~fgg~~~pa 307 (434)
T 1wu7_A 233 ----GKSSEEIARMAAVEDLLASYGVK-NVRYDFSIVRGLSYYTGIVFEAYDRSGQFRAILGGGRYDNLASLMSGESVPA 307 (434)
T ss_dssp ----TCCCHHHHHHHHHHHHHHHTTCC-CCEECTTCCTTTTTCSSEEEEEEETTSSCSCSSEEEECTTHHHHHHSCCCCE
T ss_pred ----hhHHHHHHHHHHHHHHHHHcCCC-EEEECCCcccCccccCCeEEEEEECCCCcCeeeecccHHHHHHHhCCCCCCe
Confidence 12346788999999999999985 79999999999999999 138999999999999998788999
Q ss_pred cceehhhHHHHHHHHHHHHhhhhcc-ccchhhhhhhhcCC-CccchHHHHHHHhhhccceeeee-hhhHHHHHhhhhcCC
Q 003041 733 VGVSLGIERVFTIMEQIQKERNQII-RATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMV-HKKVMKLIDRARESK 809 (854)
Q Consensus 733 vGfsigieRL~~~L~~~~~~~~~~~-~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~-~~~l~k~l~~A~~~g 809 (854)
+||+||+|||+.++.+++ .| +.+|++|+|++.++ ....+.+++++||++||+|++++ +.++++++++|++.|
T Consensus 308 ~Gf~igveRl~~~l~e~~-----~~~p~~p~~v~v~~~~~~~~~~a~~l~~~Lr~~Gi~v~~d~~~~~~~~~~~~a~~~g 382 (434)
T 1wu7_A 308 VGFGMGDAVISLLLKREN-----VQIPREKKSVYICRVGKINSSIMNEYSRKLRERGMNVTVEIMERGLSAQLKYASAIG 382 (434)
T ss_dssp EEEEEEHHHHHHHHHHTT-----CCCCCSSCEEEEEEESSCCHHHHHHHHHHHHTTTCEEEECCSCCCHHHHHHHHHHTT
T ss_pred EEEEEcHHHHHHHHHhcC-----CccCCCCCcEEEEEcChHHHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHCC
Confidence 999999999999998753 36 55678999999876 66789999999999999999987 468999999999999
Q ss_pred CceEEEeecccccccceeeeccccchhhhcchhhhHHHHHHhhc
Q 003041 810 IPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 853 (854)
Q Consensus 810 i~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~ 853 (854)
+||+|+||++|+++|+|+||++.++++..|+++|++++|+++|+
T Consensus 383 ~~~~iiiG~~e~~~g~v~vk~~~~~~~~~v~~~el~~~l~~~~~ 426 (434)
T 1wu7_A 383 ADFAVIFGERDLERGVVTIRNMYTGSQENVGLDSVVEHLISQAT 426 (434)
T ss_dssp CSEEEEEEHHHHHTTEEEEEETTTCCEEEEEGGGHHHHHHHCCC
T ss_pred CCEEEEECchhhhcCeEEEEECCCCCeEEEcHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999998764
No 14
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=100.00 E-value=6.2e-64 Score=565.35 Aligned_cols=373 Identities=21% Similarity=0.281 Sum_probs=319.0
Q ss_pred CCCCCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhhhccCCceeeeccccc
Q 003041 429 RLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTV 508 (854)
Q Consensus 429 ~~~~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D~~G~~l~LRpDlT~ 508 (854)
+..++|+|++||+|.++.++++++++++++|++|||++|.||+||+.++|....+...++||+|.|++|+.++||||+|+
T Consensus 8 ~~~~~p~G~~d~lP~~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~g~~~~~~my~f~D~~g~~l~LRpd~T~ 87 (400)
T 3od1_A 8 FMFEKPFGMRDTLPEWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVVSAILDQQLFKLLDQQGNTLVLRPDMTA 87 (400)
T ss_dssp CTTCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHHSSSCGGGSCEEECTTSCEEEECSCSHH
T ss_pred hcccCCCcchhcCHHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccceEEEECCCCCEEEECCCCHH
Confidence 45799999999999999999999999999999999999999999999999765333468999999999999999999999
Q ss_pred chhhhhhhc---cccchhhhhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhhhcCCCcceeeec
Q 003041 509 PFARYVAMN---GLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIGDYEIKLN 585 (854)
Q Consensus 509 ~~aR~~a~~---~~~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~Lgl~~~~i~Ln 585 (854)
|++|+++++ ...|+|+||+|+|||+|+|+.||+|||+|+|+|+||..+ +.+|+|+|.++.++|+.||++++.|+||
T Consensus 88 ~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~~~gR~Ref~Q~g~ei~G~~~-~~aDaEvi~l~~~~l~~lgl~~~~i~l~ 166 (400)
T 3od1_A 88 PIARLVASSLKDRAYPLRLAYQSNVYRAQQNEGGKPAEFEQLGVELIGDGT-ASADGEVIALMIAALKRAGLSEFKVAIG 166 (400)
T ss_dssp HHHHHHHHHCSSSCSCEEEEEEEEEECCCC---CCCSEEEEEEEEEESCCS-HHHHHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred HHHHHHHhhcccCCCCeEEEEEcCEEeCCCCCCCCCCccEEeEEEEECCCC-hHhHHHHHHHHHHHHHHCCCCceEEEec
Confidence 999999975 467999999999999999999999999999999999854 4679999999999999999999999999
Q ss_pred hhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHHHHHHHhcCcceeecccccccccccCChHHHHHHHhhhcchhh
Q 003041 586 HRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFL 665 (854)
Q Consensus 586 h~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~gl~~~~~~~L~~l~~~~g~~~~vl~~l~~~~~~~~ 665 (854)
|+++++++++.||++++.+..+++.|+++|+..++++ ++..+++.++.+.|..++.+.|++ ++++++.. +.
T Consensus 167 ~~~i~~~ll~~~~~~~~~~~~l~~~l~~~~~~~~~~~----l~~~~l~~~~~~~l~~l~~~~g~~-~~l~~~~~----l~ 237 (400)
T 3od1_A 167 HVGYVNALLMDVVGNEQRADRLRRFLYEKNYVGYREH----VKSLNLSTIDKSRLMNLLSLRGGR-AAIEEARG----LI 237 (400)
T ss_dssp EHHHHHHHHHHHHCCHHHHHHHHHHHHTTCHHHHHHH----HHHSSSCHHHHHHHHHGGGCEESH-HHHHHHHT----TC
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHHHhcChhHHHHH----HHhcCCCHHHHHHHHHHHhccCCH-HHHHHHHh----hh
Confidence 9999999999999999999999999999987777553 445688888999999998888887 67887763 33
Q ss_pred cccccccccchHHHHHHHhhhccccceeeeeccccccCccccc---------c-cccccCCcccccccccCCcccCccce
Q 003041 666 ENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG---------V-GSIAAGGRYDNLIGMFGTKQVPAVGV 735 (854)
Q Consensus 666 ~~~~~~~al~~L~~l~~~l~~~gv~~~I~~D~sl~rgl~YYtG---------~-~~Ia~GGRYD~Li~~fg~~~~pAvGf 735 (854)
.+..+.+++++|+.++++|+.+|+..++.|||+++||++|||| . .+||+|||||+|++.||+ +.|||||
T Consensus 238 ~~~~~~~~l~~l~~l~~~L~~~gi~~~~~~D~~lvRgldYYTG~vFe~~~~~~g~~i~~GGRYD~L~~~fG~-~~pavGf 316 (400)
T 3od1_A 238 QTEKGKTALAEMTKLYEVLESYGASEYVKFDLTLVLHMSYYTGVVFEGYGNRLGVPLCSGGRYDELLSKFHR-PAQATGF 316 (400)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHTTCGGGEEEETTCCSCSSSCCSEEEEEEETTCSSEEEEEEECTTHHHHTTC-CCCEEEE
T ss_pred cChhhHHHHHHHHHHHHHHHHcCCCceEEEeCCccCCCcccCCeEEEEEECCCCCeeecccccchhhhccCC-CCCEEEE
Confidence 3344577899999999999999998889999999999999999 1 389999999999999987 5999999
Q ss_pred ehhhHHHHHHHHHHHHhhhhccccchhhhhhhhcCC-CccchHHHHHHHhhhccceeeeehhhHHHHHhhhhcCCCceEE
Q 003041 736 SLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMV 814 (854)
Q Consensus 736 sigieRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~~~~l~k~l~~A~~~gi~~iv 814 (854)
++++|||+.++.+.+. +.+ ..+|+|+ .++ ...++++++++||++|++|++......+.. ||...|+.+++
T Consensus 317 aiglerL~~~l~~~~~-----~~~-~~~v~v~-~~~~~~~~a~~~a~~LR~~G~~v~~~~~~~~~~~--~~~~~~~~~~~ 387 (400)
T 3od1_A 317 GVRIDLLVEALNGEII-----SNG-HEQTCIL-FSNERRFEAIELARKKRANGEAVVLQDLAGVTDV--DAMSSNYQDVI 387 (400)
T ss_dssp EEEHHHHHHHHCC------------CCCEEEE-ECGGGHHHHHHHHHHHHTTTCCEEEEEGGGCSCH--HHHHTTSSEEE
T ss_pred EeeHHHHHHHHHhcCC-----CCC-CCeEEEE-ECcHHHHHHHHHHHHHHHCCCEEEEEecCChhHH--HHHHcCCCEEE
Confidence 9999999999865432 111 1346665 444 567899999999999999999874333222 88899999999
Q ss_pred Eeecccc
Q 003041 815 IVGEREL 821 (854)
Q Consensus 815 iIg~~e~ 821 (854)
.+.+++-
T Consensus 388 ~~~~~~~ 394 (400)
T 3od1_A 388 YCIGTAG 394 (400)
T ss_dssp EECSCC-
T ss_pred EEecCCC
Confidence 9987653
No 15
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=100.00 E-value=2.2e-62 Score=564.21 Aligned_cols=388 Identities=22% Similarity=0.334 Sum_probs=308.7
Q ss_pred CCCCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCC-C---chhhhhhhhcc-CCceeeec
Q 003041 430 LPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGE-D---SKLIYDLADQG-GELCSLRY 504 (854)
Q Consensus 430 ~~~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~-~---~k~~y~~~D~~-G~~l~LRp 504 (854)
..++|+|++||+|.++.++++|++.++++|++|||++|.||+||+.++|..++|+ + .++||+|.|++ |+.++|||
T Consensus 31 ~~~~~~G~~d~lP~~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~g~~l~LRP 110 (467)
T 4e51_A 31 KLTGVKGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALNGENLTLRP 110 (467)
T ss_dssp CCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTTCCEEEECS
T ss_pred CCCCCCCceeeCHHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCCCCCEEEeCc
Confidence 5899999999999999999999999999999999999999999999999887687 3 47899999999 99999999
Q ss_pred ccccchhhhhhhcc---ccchhhhhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhhhcCCCcce
Q 003041 505 DLTVPFARYVAMNG---LTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIGDYE 581 (854)
Q Consensus 505 DlT~~~aR~~a~~~---~~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~Lgl~~~~ 581 (854)
|+|+|++|+++++. ..|+|+||+|+|||+|+|+.||+|||+|+|+|+||..++ .+|+|+|.++.++|+.||+++|.
T Consensus 111 d~t~~~ar~~~~~~~~~~lP~r~~~~g~vfR~E~~~~gR~ReF~Q~d~ei~g~~~~-~adaEvi~l~~~~l~~lGl~~~~ 189 (467)
T 4e51_A 111 ENTAAVVRAAIEHNMLYDGPKRLWYIGPMFRHERPQRGRYRQFHQVGVEALGFAGP-DADAEIVMMCQRLWEDLGLTGIK 189 (467)
T ss_dssp CSHHHHHHHHHHTTTTTTSCEEEEEEEEEECCCCC---CCSEEEEEEEEEETCCCS-HHHHHHHHHHHHHHHHHTCCCEE
T ss_pred ccHHHHHHHHHHcccccCCCEEEEEEccEEccCCCCCCCcCceEEEEEEEEeCCCh-HHHHHHHHHHHHHHHHcCCCceE
Confidence 99999999998753 369999999999999999999999999999999998654 47899999999999999999999
Q ss_pred eeechhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHHHHHHHhcCcceeecccccccccccCChHHHHHHHh---
Q 003041 582 IKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLR--- 658 (854)
Q Consensus 582 i~Lnh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~gl~~~~~~~L~~l~~~~g~~~~vl~~l~--- 658 (854)
|+|||++..+..- ..+..+...+.+. ..+++.++.++|. .+|.++++...
T Consensus 190 i~in~~g~~~~~~-------~~~~~l~~~l~~~--------------~~~l~~~~~~~l~------~~~l~~ld~k~~~~ 242 (467)
T 4e51_A 190 LEINSLGLAEERA-------AHRVELIKYLEQH--------------ADKLDDDAQRRLY------TNPLRVLDTKNPAL 242 (467)
T ss_dssp EEEEECCCHHHHH-------HHHHHHHHHHHTT--------------GGGCCHHHHHHHT------TCTHHHHTCCCGGG
T ss_pred EEEeCCCchhhhH-------HHHHHHHHHHHHH--------------HhccCHHHHHHHH------hchHHHhhccchhH
Confidence 9999987543210 0011111111100 0112222222221 12222222110
Q ss_pred ----hhcchhhcccccccccchHHHHHHHhhhccccceeeeeccccccCccccc------------ccccccCCcccccc
Q 003041 659 ----QEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG------------VGSIAAGGRYDNLI 722 (854)
Q Consensus 659 ----~~~~~~~~~~~~~~al~~L~~l~~~l~~~gv~~~I~~D~sl~rgl~YYtG------------~~~Ia~GGRYD~Li 722 (854)
.....+.. ....+++++++.+.++|+.+|+ .+.|||+++||++|||| .++|++|||||+|+
T Consensus 243 ~~~l~~a~~l~~-~l~~~~~~~l~~l~~~L~~~gi--~~~~d~~lvRgl~YYtg~vFe~~~~~~g~~~tI~~GGRYD~Lv 319 (467)
T 4e51_A 243 QEIVRNAPKLID-FLGDVSRAHFEGLQRLLKANNV--PFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLI 319 (467)
T ss_dssp HHHHHTSCCGGG-GCCHHHHHHHHHHHHHHHHTTC--CEEECTTCCCSCTTCCSEEEEEEECC----CEEEEEEECTHHH
T ss_pred HHHHhhhHHHHH-hhhHHHHHHHHHHHHHHHHcCC--eEEEcCccccCccccCCeEEEEEECCCCCcceecCCCcHHHHH
Confidence 00011111 0123456788999999999998 49999999999999999 14899999999999
Q ss_pred cccCCcccCccceehhhHHHHHHHHHHHHhhhhccccchhhhhhhhcCC-CccchHHHHHHHhhhccceeeeeh-----h
Q 003041 723 GMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVH-----K 796 (854)
Q Consensus 723 ~~fg~~~~pAvGfsigieRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~~-----~ 796 (854)
+.||+++.|||||++++|||+.+|.+++. .+..+|++|+|++.++ ...++.+++++||++||+|++++. .
T Consensus 320 ~~~g~~~~PavGfa~gleRl~~~l~~~~~----~~~~~p~~V~Vip~~~~~~~~A~~ia~~LR~~Gi~ve~d~~~~~~~~ 395 (467)
T 4e51_A 320 EQLGGKPTAACGWAMGIERILELLKEEHL----VPEQEGVDVYVVHQGDAAREQAFIVAERLRDTGLDVILHCSADGAGA 395 (467)
T ss_dssp HHTTSSCCCEEEEEEEHHHHHHHHHHTTC----CCCCCCCSEEEEECSHHHHHHHHHHHHHHHHTTCCEEECCCTTSSCC
T ss_pred HHhCCCCCCceeehHHHHHHHHHHHhcCC----cccCCCCeEEEEEcChHHHHHHHHHHHHHHHcCCeEEEEcccccccC
Confidence 99998899999999999999999977421 1223578999999886 567899999999999999999875 5
Q ss_pred hHHHHHhhhhcCCCceEEEeecccccccceeeecccc-c------hhhhcchhhhHHHHHHhh
Q 003041 797 KVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDT-T------QEEVISRSNFVEEIQRRL 852 (854)
Q Consensus 797 ~l~k~l~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~-~------~e~~v~~~elv~~L~~~l 852 (854)
++++++++|++.|+||+|+||++|+++|+|+||++.+ + ++..|++++++++|++++
T Consensus 396 sl~kq~~~A~~~g~~~~iiiG~~E~~~g~V~vk~~~~~~~~~~~~~q~~v~~~elv~~l~~~~ 458 (467)
T 4e51_A 396 SFKSQMKRADASGAAFAVIFGEDEVTNGTASVKPLRGTGDDGEKSVQQSVPVESLTEFLINAM 458 (467)
T ss_dssp CHHHHHHHHHHTTCSEEEEECHHHHHHTEEEEEEC---------CCCEEEEGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCEEEEECcchhhCCeEEEEECCCCCCCCCcccceEEcHHHHHHHHHHHh
Confidence 7999999999999999999999999999999999999 8 899999999999998876
No 16
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=100.00 E-value=1.5e-60 Score=544.25 Aligned_cols=391 Identities=25% Similarity=0.379 Sum_probs=311.5
Q ss_pred CCCCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC----chhhhhhhhccCCceeeecc
Q 003041 430 LPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED----SKLIYDLADQGGELCSLRYD 505 (854)
Q Consensus 430 ~~~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~----~k~~y~~~D~~G~~l~LRpD 505 (854)
..++|+|++||+|.++.++++|+++++++|++|||++|.||+|||.++|..++|++ .++||+|.|++|+.++||||
T Consensus 2 ~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrpd 81 (421)
T 1h4v_B 2 TARAVRGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRGGRSLTLRPE 81 (421)
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEEECCCCCEEeeCCc
Confidence 36899999999999999999999999999999999999999999999998766773 47899999999999999999
Q ss_pred cccchhhhhhhc----cccchhhhhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhhhcCCCcce
Q 003041 506 LTVPFARYVAMN----GLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIGDYE 581 (854)
Q Consensus 506 lT~~~aR~~a~~----~~~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~Lgl~~~~ 581 (854)
+|++++|+++++ +..|+|+||+|+|||+|+|+.||+|||+|+|+|+||.++. .+|+|++.++.++|+.||++++.
T Consensus 82 ~t~~~ar~~~~~~~~~~~lP~rl~~~g~vfR~e~p~~gR~REf~Q~g~e~~g~~~~-~ad~e~i~~~~~~l~~lgl~~~~ 160 (421)
T 1h4v_B 82 GTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKGRYRQFHQVNYEALGSENP-ILDAEAVVLLYECLKELGLRRLK 160 (421)
T ss_pred chHHHHHHHHhccccccCCCeEEEEecCeecCCCCCCCCcccEEEccEEEECCCCh-hhhHHHHHHHHHHHHHcCCCceE
Confidence 999999999865 3579999999999999999999999999999999998554 67999999999999999998899
Q ss_pred eeechhhhhhhhhhhcCCCccchhh-hccchh----hhhhhhHHHHHHHHHHhcCcceeecccccccccccCC-hHHHHH
Q 003041 582 IKLNHRLLLDGMLEICGVPSEKFRT-ICSSID----KLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGS-PLVLLS 655 (854)
Q Consensus 582 i~Lnh~~ll~~il~~~gi~~~~~~~-v~~~l~----kl~k~~~~~i~~~L~~~~gl~~~~~~~L~~l~~~~g~-~~~vl~ 655 (854)
++|||.+..+... .++. +...+. ++++..++.+ .. ..+ .++...+. ..+++.
T Consensus 161 i~i~~~g~~~~~~--------~~~~~l~~~l~~~~~~l~~~~~~~l----~~-~~~---------~~l~~~~~~~~~~~~ 218 (421)
T 1h4v_B 161 VKLSSVGDPEDRA--------RYNAYLREVLSPHREALSEDSKERL----EE-NPM---------RILDSKSERDQALLK 218 (421)
T ss_pred EEEcCCCchhhHH--------HHHHHHHHHHHHHHhhcCHHHHHHH----Hh-cch---------HhhhcccHHHHHHHH
Confidence 9999976332210 1111 111111 1111111111 00 000 00111111 012221
Q ss_pred HHhhhcchhhcccccccccchHHHHHHHhhhccccceeeeeccccccCccccc------------ccccccCCccccccc
Q 003041 656 KLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG------------VGSIAAGGRYDNLIG 723 (854)
Q Consensus 656 ~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~gv~~~I~~D~sl~rgl~YYtG------------~~~Ia~GGRYD~Li~ 723 (854)
.+. ...+. +....+++++++.++++++.+|+ +|+||++++|+++|||| .++|++|||||+|++
T Consensus 219 ~~~--~~~l~-~~l~~~~~~~l~~~~~~l~~~g~--~i~~D~~l~rg~~YYtg~vFe~~~~~~g~~~~v~~GGRYd~l~~ 293 (421)
T 1h4v_B 219 ELG--VRPML-DFLGEEARAHLKEVERHLERLSV--PYELEPALVRGLDYYVRTAFEVHHEEIGAQSALGGGGRYDGLSE 293 (421)
T ss_pred hcC--hHHHH-HHhhHHHHHHHHHHHHHHHHcCC--eEEEecccccchhhhcCeEEEEEecCCCCcCccccCCcHHHHHH
Confidence 000 00111 00113466788999999999886 79999999999999999 138999999999999
Q ss_pred ccCCcccCccceehhhHHHHHHHHHHHHhhhhccccchhhhhhhhcCC-CccchHHHHHHHhhhccceeeee-hhhHHHH
Q 003041 724 MFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMV-HKKVMKL 801 (854)
Q Consensus 724 ~fg~~~~pAvGfsigieRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~-~~~l~k~ 801 (854)
.|++++.|++||++|+|||+.++.+++. .+.| .+|++|+|++.++ ....+.+++++||++ ++|++++ +.+++++
T Consensus 294 ~fgg~~~pa~Gf~igieRl~~~l~e~~~--~~~~-~~p~~v~i~~~~~~~~~~a~~l~~~Lr~~-i~v~~d~~~~~~~~~ 369 (421)
T 1h4v_B 294 LLGGPRVPGVGFAFGVERVALALEAEGF--GLPE-EKGPDLYLIPLTEEAVAEAFYLAEALRPR-LRAEYALAPRKPAKG 369 (421)
T ss_pred HhCCCCCCeEEEeecHHHHHHHHHhcCc--CCCC-CCCCeEEEEECChHHHHHHHHHHHHHHhc-CEEEEecCCCCHHHH
Confidence 9988889999999999999999987532 1123 3688999998875 567899999999999 9999987 4689999
Q ss_pred HhhhhcCCCceEEEeecccccccceeeeccccchhhhcchhhhHHHHHHhh
Q 003041 802 IDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 852 (854)
Q Consensus 802 l~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l 852 (854)
+++|++.|+||+|+||++|+++|+|+||++.++++..++++|++++|++.|
T Consensus 370 ~~~a~~~g~p~~iivG~~e~~~~~v~vk~~~~~~~~~v~~~el~~~l~~~l 420 (421)
T 1h4v_B 370 LEEALKRGAAFAGFLGEDELRAGEVTLKRLATGEQVRLSREEVPGYLLQAL 420 (421)
T ss_pred HHHHHhCCCCEEEEECchHhhcCcEEEEECCCCCceEECHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999998765
No 17
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=100.00 E-value=8.3e-61 Score=546.70 Aligned_cols=391 Identities=21% Similarity=0.319 Sum_probs=306.8
Q ss_pred CCCCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC----chhhhhhhhccCCceeeecc
Q 003041 430 LPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED----SKLIYDLADQGGELCSLRYD 505 (854)
Q Consensus 430 ~~~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~----~k~~y~~~D~~G~~l~LRpD 505 (854)
..++|+|++||+|.++.++++|++.++++|++|||+||.||+|||.++|..++|++ .++||+|.|++|+.++||||
T Consensus 3 ~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrpd 82 (423)
T 1htt_A 3 NIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRPE 82 (423)
T ss_dssp CCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECTTSCEEEECSC
T ss_pred CCCCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcCCCCEEEeCCC
Confidence 36899999999999999999999999999999999999999999999998766873 37899999999999999999
Q ss_pred cccchhhhhhhc---cccchhhhhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhhhcCC-Ccce
Q 003041 506 LTVPFARYVAMN---GLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDI-GDYE 581 (854)
Q Consensus 506 lT~~~aR~~a~~---~~~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~Lgl-~~~~ 581 (854)
+|++++|+++++ +..|+|+||+|+|||+|+|+.||+|||+|+|+|+||.++. .+|+|+|.++.++|+.||+ ++|.
T Consensus 83 ~t~~~aR~~~~~~~~~~~P~rl~~~g~vfR~e~p~~gR~Ref~Q~d~e~~g~~~~-~ad~e~i~~~~~~l~~lgl~~~~~ 161 (423)
T 1htt_A 83 GTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQGP-DIDAELIMLTARWWRALGISEHVT 161 (423)
T ss_dssp SHHHHHHHHHHHTCSTTCCEEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCCSH-HHHHHHHHHHHHHHHHHTCGGGCE
T ss_pred chHHHHHHHHhcccccCCCeEEEEEcCEecCCCCCCCccceeEEeeEEEECCCCc-hhhHHHHHHHHHHHHHCCCCCCcE
Confidence 999999999865 3579999999999999999999999999999999998554 5699999999999999999 8899
Q ss_pred eeechhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHHHHHHHhcCcceeeccccc----ccccccCC-hHHHHHH
Q 003041 582 IKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIG----TFVKERGS-PLVLLSK 656 (854)
Q Consensus 582 i~Lnh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~gl~~~~~~~L~----~l~~~~g~-~~~vl~~ 656 (854)
+++||.+..+....+ +..+...+.......++ ...+.+. +++...+. ..+++..
T Consensus 162 i~i~~~g~~~~~~~~-------~~~l~~~l~~~~~~~~~--------------~~~~~l~~~~l~~l~~~~~~~~~~l~~ 220 (423)
T 1htt_A 162 LELNSIGSLEARANY-------RDALVAFLEQHKEKLDE--------------DCKRRMYTNPLRVLDSKNPEVQALLND 220 (423)
T ss_dssp EEEEECCCHHHHHHC-----------------------------------------------------------------
T ss_pred EEEcCCCChhhHHHH-------HHHHHHHHHHHHhccCH--------------HHHHHHHhchhHhhhcccHHHHHHHhc
Confidence 999997643321100 00111111100000011 1111111 00011110 0011111
Q ss_pred HhhhcchhhcccccccccchHHHHHHHhhhccccceeeeeccccccCccccc------------ccccccCCcccccccc
Q 003041 657 LRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG------------VGSIAAGGRYDNLIGM 724 (854)
Q Consensus 657 l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~gv~~~I~~D~sl~rgl~YYtG------------~~~Ia~GGRYD~Li~~ 724 (854)
. ..+. .....+++++++.++++++.+|+ +|+||++++|+++|||| .++|++|||||+|++.
T Consensus 221 ~----~~l~-~~l~~~~~~~l~~~~~~l~~~g~--~i~~D~~l~rg~~YYtg~vFe~~~~~~g~~~~v~~GGRYD~l~~~ 293 (423)
T 1htt_A 221 A----PALG-DYLDEESREHFAGLCKLLESAGI--AYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQ 293 (423)
T ss_dssp ------------CCHHHHHHHHHHHHHHHTTTC--CCEECTTCCCSSTTCCSEEEEEECC----CCEEEEEEECTTHHHH
T ss_pred c----hHHH-hhhhHHHHHHHHHHHHHHHHcCC--eEEEccccccchHHHcCceEEEEeCCCCCcCCcCCCccHHHHHHH
Confidence 0 0111 00123467889999999999986 79999999999999999 1389999999999999
Q ss_pred cCCcccCccceehhhHHHHHHHHHHHHhhhhccccchhhhhhhhcCC-CccchHHHHHHHhhh--ccceeeee-hhhHHH
Q 003041 725 FGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNA--KVKAEYMV-HKKVMK 800 (854)
Q Consensus 725 fg~~~~pAvGfsigieRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~--GI~ael~~-~~~l~k 800 (854)
|++++.|+|||++|+|||+.++.+++. .+.| .+|++|+|++.++ ....+.+++++||++ ||+|++++ +.++++
T Consensus 294 fgg~~~pavGf~igveRl~~~l~e~~~--~~~~-~~p~~v~i~~~~~~~~~~a~~l~~~Lr~~~~Gi~v~~d~~~~~~~~ 370 (423)
T 1htt_A 294 LGGRATPAVGFAMGLERLVLLVQAVNP--EFKA-DPVVDIYLVASGADTQSAAMALAERLRDELPGVKLMTNHGGGNFKK 370 (423)
T ss_dssp TTSCCCCEEEEEEEHHHHHHHHHHHST--TCCC-CCSCSEEEEECSTTHHHHHHHHHHHHHHHSTTCCEEECCSCCCHHH
T ss_pred hCCCCCCeEEEEecHHHHHHHHHhcCc--CCCC-CCCCcEEEEEcCHHHHHHHHHHHHHHHcCCCCcEEEEeCCCCCHHH
Confidence 988889999999999999999987531 1123 3678999999876 567899999999999 99999987 468999
Q ss_pred HHhhhhcCCCceEEEeecccccccceeeeccccchhhhcchhhhHHHHHHhh
Q 003041 801 LIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 852 (854)
Q Consensus 801 ~l~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l 852 (854)
++++|++.|+||+|+||++|+++|+|+||++.++++..|+++|+++++++.+
T Consensus 371 ~~~~a~~~g~p~~iiiG~~e~~~~~v~vk~~~~~~~~~v~~~el~~~l~~~~ 422 (423)
T 1htt_A 371 QFARADKWGARVAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLRTLL 422 (423)
T ss_dssp HHHHHHHHTCSEEEEECHHHHHHTEEEEEETTTCCEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEECchhhhcCeEEEEECCCCCceEEcHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999998765
No 18
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=100.00 E-value=7.7e-58 Score=511.22 Aligned_cols=311 Identities=27% Similarity=0.390 Sum_probs=270.5
Q ss_pred CCCCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCc-hhhhhhhhccCCceeeeccccc
Q 003041 430 LPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDS-KLIYDLADQGGELCSLRYDLTV 508 (854)
Q Consensus 430 ~~~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~-k~~y~~~D~~G~~l~LRpDlT~ 508 (854)
..++|+|++||+|.++.+++++++.++++|++|||++|.||+||+.++|..+.+... ++||+|.|++|+.++||||+|+
T Consensus 22 ~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~~g~~~~~~~my~~~D~~g~~l~LRpd~T~ 101 (373)
T 3rac_A 22 FADRPPGMQDGYPDFAKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRARSPESSRDWIRLFDGGGDAVALRPEMTP 101 (373)
T ss_dssp CCCCCTTCCCCCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHTTSCTTSCCCCCBCCCCSSSCEEECSSSHH
T ss_pred cCCCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhhcCCccchhceEEEECCCCCEEEECCcCHH
Confidence 468999999999999999999999999999999999999999999999977432335 7899999999999999999999
Q ss_pred chhhhhhhc---cccchhhhhhhhhhcccCC------CCccccccccccccccccccccCCChhhHHHHHHHhhhcCCCc
Q 003041 509 PFARYVAMN---GLTSFKRHQIAKVYRRDNP------SKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIGD 579 (854)
Q Consensus 509 ~~aR~~a~~---~~~p~K~y~ig~VfR~e~p------~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~Lgl~~ 579 (854)
|++|+++++ ...|+|+||+|+|||+|+| +.||+|||+|+|+|+||..+++.+|+|+|.++.++|+.||+++
T Consensus 102 ~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~g~~~~~~~gR~ReF~Q~g~ei~g~~d~~~aDaEvi~l~~~~l~~lgl~~ 181 (373)
T 3rac_A 102 SIARMAAPRVAAGRTPIRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGEEASVDVDMDVLRLLHEASAAAGVRH 181 (373)
T ss_dssp HHHHHHHHHHHTTCCCCEEEEEEEEEECC------------CEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHhccccCCCCeEEEEEcceEccCCCcccccccCCccceeEEeeeEEECCCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 999999975 4679999999999999999 8999999999999999986456789999999999999999999
Q ss_pred ceeeechhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHHHHHHHhcCcceeecccccccccccC-----------
Q 003041 580 YEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERG----------- 648 (854)
Q Consensus 580 ~~i~Lnh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~gl~~~~~~~L~~l~~~~g----------- 648 (854)
+.|+|||+++++++++.||++++.+..+++.|+++|+..|+++.+++ +++..+.|.+++.+.|
T Consensus 182 ~~i~l~~~~i~~~ll~~~g~~~~~~~~l~~~l~k~~~~~~~~~~~~l------~~~~~~~l~~l~~l~g~~~~~~~~~~~ 255 (373)
T 3rac_A 182 HRIVVSHARLVPRLLDALGISASLSRAFLACLTSGNYVQFRELWQLH------AAKDVDLLANLLTWSPAERDAAKRSRE 255 (373)
T ss_dssp CEEEEEETTHHHHHHHHTTCCHHHHHHHHHHHHHTCHHHHHHHHHHH------CSCCSCHHHHHHHBCCCSSCTTSBCHH
T ss_pred eEEEecCHHHHHHHHHHcCCCHHHHHHHHHHHHhcChhhHHHHHHhc------CHHHHHHHHHHHHHhCCcccccccccc
Confidence 99999999999999999999999999999999999988888876555 4566778888888887
Q ss_pred ChHHHHHHHhhhcchhhccccc----ccccchHHHHHHHhhhccc-cceeeeeccccccCccccc---------c-cccc
Q 003041 649 SPLVLLSKLRQEGSLFLENSSA----KLALDDLEILFQALEKSKC-IDKVVFDLSLARGLDYYTG---------V-GSIA 713 (854)
Q Consensus 649 ~~~~vl~~l~~~~~~~~~~~~~----~~al~~L~~l~~~l~~~gv-~~~I~~D~sl~rgl~YYtG---------~-~~Ia 713 (854)
+..++++++.. +..+... .+++++|+.++++|+.+|+ ..+|.|||+++||++|||| . .+|+
T Consensus 256 ~~~~~l~~~~~----l~~~~~~~~~~~~al~~l~~l~~~L~~~gi~~~~i~~D~~lvRgldYYTG~vFe~~~~~~g~~i~ 331 (373)
T 3rac_A 256 ASDRELEALLR----DAVDPRAAADVRDAWRYLCRLAEALHDSGLASDVVTFDLALHRELDYYTGLVFEMFAPGVGAPIA 331 (373)
T ss_dssp HHHHHHHHHHT----TCSCHHHHHHHHHHHHHHHHHHHHHHHHTCCTTTEEECTTCCCSCTTCCSEEEEEECTTCSSCSE
T ss_pred ccHHHHHHHHh----hhcCcccchhHHHHHHHHHHHHHHHHHcCCCCceEEEeCCccCCCCccCCeEEEEEECCCCCeEe
Confidence 13467777753 2223333 6789999999999999998 7799999999999999999 1 3899
Q ss_pred cCCcccccccccCCcccCccceehhhHHHHHHHHHHHH
Q 003041 714 AGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQK 751 (854)
Q Consensus 714 ~GGRYD~Li~~fg~~~~pAvGfsigieRL~~~L~~~~~ 751 (854)
+|||||+|++.||+ +.|||||++++|||+.+|.+++.
T Consensus 332 ~GGRYD~L~~~fG~-~~pAvGFaiglerL~~~l~~~~~ 368 (373)
T 3rac_A 332 QGGRYDELLAQFGA-GAPAVGFAFEVERVMAVLEAQEE 368 (373)
T ss_dssp EEEECTTTTGGGTC-CCCCEEEEEEHHHHHHHHHHHHC
T ss_pred ecccccHHHHhhCC-CCCeEEEEEEHHHHHHHHHhccC
Confidence 99999999999986 59999999999999999987643
No 19
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=100.00 E-value=4.9e-56 Score=506.84 Aligned_cols=386 Identities=20% Similarity=0.325 Sum_probs=293.4
Q ss_pred CCCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCC-C---chhhhhhhhccCCceeeeccc
Q 003041 431 PKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGE-D---SKLIYDLADQGGELCSLRYDL 506 (854)
Q Consensus 431 ~~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~-~---~k~~y~~~D~~G~~l~LRpDl 506 (854)
.++|+|++||+|.++.+++++++.++++|++|||++|.||+|++.++|...+|. + .++||+|.|++|+.++||||+
T Consensus 2 ~~~~~G~~~~~p~~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D~~g~~~~Lrp~~ 81 (420)
T 1qe0_A 2 IKIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGDRSITLRPEG 81 (420)
T ss_dssp CCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHHHHCCEEECSCS
T ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEEEcCCCCEEEeCCCC
Confidence 578999999999999999999999999999999999999999999999775443 2 478999999999999999999
Q ss_pred ccchhhhhhhc-----cccchhhhhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhhhcCCCcce
Q 003041 507 TVPFARYVAMN-----GLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIGDYE 581 (854)
Q Consensus 507 T~~~aR~~a~~-----~~~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~Lgl~~~~ 581 (854)
|++++|+++++ +.+|+|+||+|+|||+|+|+.||+|||+|+|+|+||.++. .+|+|+|.++.++|+.||++++.
T Consensus 82 t~~~~r~~~~~~~~~~~~lP~r~~~~g~vfR~E~~~~gR~reF~q~~~e~~~~~~~-~~d~e~i~~~~~~l~~lgl~~~~ 160 (420)
T 1qe0_A 82 TAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEAIGAENP-SVDAEVLAMVMHIYQSFGLKHLK 160 (420)
T ss_dssp HHHHHHHHHHTTGGGCSSCSEEEEEEEEEECC-------CCEEEEEEEEEESCCCH-HHHHHHHHHHHHHHHHTTCCCEE
T ss_pred hHHHHHHHHhccccccCCCCeEEEEecCEeecCCCcCCCcccEEEeeEEEECCCCc-hhHHHHHHHHHHHHHHcCCCceE
Confidence 99999999853 3579999999999999999999999999999999998654 56899999999999999998899
Q ss_pred eeechhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHHHHHHHhcCcceeeccccc----ccccccCC-hHHHHHH
Q 003041 582 IKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIG----TFVKERGS-PLVLLSK 656 (854)
Q Consensus 582 i~Lnh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~gl~~~~~~~L~----~l~~~~g~-~~~vl~~ 656 (854)
+++||.+....... .+..+...+... . ..++..+.+.+. +++...+. ..++++.
T Consensus 161 i~l~~~g~~~~~~~-------~~~~l~~~~~~~------------~--~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~ 219 (420)
T 1qe0_A 161 LVINSVGDMASRKE-------YNEALVKHFEPV------------I--HEFCSDCQSRLHTDPMRILDCKVDRDKEAIKT 219 (420)
T ss_dssp EEEEECCCHHHHHH-------HHHHHHHHHGGG------------G--GGSCHHHHHTTTTCGGGGC------------C
T ss_pred EEEcccCchhhHHH-------HHHHHHHHHHHH------------H--hhhCHHHHHHHHhcchhhhcccchhHHHHHhh
Confidence 99999753221100 000000011100 0 011111111111 01110100 0011111
Q ss_pred HhhhcchhhcccccccccchHHHHHHHhhhccccceeeeeccccccCccccc---------c---c---ccccCCccccc
Q 003041 657 LRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG---------V---G---SIAAGGRYDNL 721 (854)
Q Consensus 657 l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~gv~~~I~~D~sl~rgl~YYtG---------~---~---~Ia~GGRYD~L 721 (854)
. ..+. +....+++++++.+.++++.+|+ .+.||++++|+++|||| . + +|++|||||+|
T Consensus 220 a----~~l~-~~l~~~~~~~l~~l~~~l~~~gi--~~~~d~~l~rg~~yYtg~vfe~~~~~~~~~g~~~~i~~GgRYd~l 292 (420)
T 1qe0_A 220 A----PRIT-DFLNEESKAYYEQVKAYLDDLGI--PYTEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGL 292 (420)
T ss_dssp C----CCGG-GCCCTTHHHHHHHHHHHHHHHTC--CCEECTTCCCCCTTEEEEEEEEEEECTTSTTSEEEEEEEEEEESH
T ss_pred c----hHHH-HHhhHHHHHHHHHHHHHHHHcCC--eEEECcccccchhhhcCeEEEEEEcCCCCCCCcCccccCccHHHH
Confidence 1 1111 11123466788899999999886 69999999999999999 2 3 78999999999
Q ss_pred ccccCCcccCccceehhhHHHHHHHHHHHHhhhhccc-cchhhhhhhhcCC-CccchHHHHHHHhhhccceeeeeh-hhH
Q 003041 722 IGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIR-ATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVH-KKV 798 (854)
Q Consensus 722 i~~fg~~~~pAvGfsigieRL~~~L~~~~~~~~~~~~-~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~~-~~l 798 (854)
++.||+++.|+|||++|+|||+.++.+ ....|+ .+|++|+|++.++ ....+.+++++||++|++|+++.. .++
T Consensus 293 ~~~~g~~~~P~vg~~igveRl~~~le~----~~~~~p~~~p~~v~i~~~~~~~~~~a~~l~~~Lr~~Gi~v~~d~~~~~~ 368 (420)
T 1qe0_A 293 LELLDGPSETGIGFALSIERLLLALEE----EGIELDIEENLDLFIVTMGDQADRYAVKLLNHLRHNGIKADKDYLQRKI 368 (420)
T ss_dssp HHHTTCCCCEEEEEEEEHHHHHHHHHH----TTCCCCCCCCCSEEEEECHHHHHHHHHHHHHHHHTTTCCEEECCSCCCH
T ss_pred HHHhCCCCCCEEEEEecHHHHHHHHHh----cCCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHHHHCCCEEEEecCCCCH
Confidence 999998889999999999999999843 123465 5788999998875 567899999999999999999874 689
Q ss_pred HHHHhhhhcCCCceEEEeecccccccceeeeccccchhhhcchhhhHHHHH
Q 003041 799 MKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQ 849 (854)
Q Consensus 799 ~k~l~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~ 849 (854)
++++++|++.|+||+|+||++|+++++|+||++.++++..|+++|++++|+
T Consensus 369 ~~~~~~a~~~g~p~~iiig~~e~~~~~v~vk~~~~~~~~~v~~~~l~~~l~ 419 (420)
T 1qe0_A 369 KGQMKQADRLGAKFTIVIGDQELENNKIDVKNMTTGESETIELDALVEYFK 419 (420)
T ss_dssp HHHHHHHHHTTCSEEEEECHHHHHHTCEEEEETTTCCEEEECTTHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEECcchhhcCeEEEEECCCCCeEEEcHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999885
No 20
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=100.00 E-value=1.4e-55 Score=488.50 Aligned_cols=303 Identities=18% Similarity=0.332 Sum_probs=261.1
Q ss_pred CCCCCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhh---ccCC-CchhhhhhhhccCCceeeec
Q 003041 429 RLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMG---KYGE-DSKLIYDLADQGGELCSLRY 504 (854)
Q Consensus 429 ~~~~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~---~~g~-~~k~~y~~~D~~G~~l~LRp 504 (854)
...+.|+|++||+|.++.++++++++++++|++|||++|.||+||+.++|.+ +.++ ..++||+|.|++|+.++|||
T Consensus 20 ~~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D~~g~~l~LRp 99 (344)
T 1z7m_A 20 INYLLPEESAEMTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHEGQSITLRY 99 (344)
T ss_dssp --CCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTTCCEEEECC
T ss_pred ccCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEEECCCCCEEecCC
Confidence 4578999999999999999999999999999999999999999999999976 3232 25789999999999999999
Q ss_pred ccccchhhhhhhcc-ccchhhhhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhhhcCCCcceee
Q 003041 505 DLTVPFARYVAMNG-LTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIGDYEIK 583 (854)
Q Consensus 505 DlT~~~aR~~a~~~-~~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~Lgl~~~~i~ 583 (854)
|+|+|++|+++++. ..|+|+||+|+|||+|+|+.||+|||+|+|+|+||..+ ..+|+|+|.++.++|+.||++++.|+
T Consensus 100 d~T~~~aR~~~~~~~~~P~rl~y~g~vfR~e~p~~gR~REF~Q~g~ei~g~~~-~~aDaEvi~l~~~~l~~lgl~~~~i~ 178 (344)
T 1z7m_A 100 DFTLPLVRLYSQIKDSTSARYSYFGKIFRKEKRHKGRSTENYQIGIELFGESA-DKSELEILSLALQVIEQLGLNKTVFE 178 (344)
T ss_dssp CSHHHHHHHHHTCCSCCCEEEEEEEECCCCCC-------CCEEEEEEEESSCH-HHHHHHHHHHHHHHHHHHTCSSEEEE
T ss_pred CCcHHHHHHHHhcCCCCCeEEEEECcEEccCCCCCCCcceeEEEEEEEEcCCC-cHHHHHHHHHHHHHHHHCCCCcEEEE
Confidence 99999999999874 47999999999999999999999999999999999854 46789999999999999999999999
Q ss_pred echhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHHHHHHHhcCcceeecccccccccccCChHHHHHHHhhhcch
Q 003041 584 LNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSL 663 (854)
Q Consensus 584 Lnh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~gl~~~~~~~L~~l~~~~g~~~~vl~~l~~~~~~ 663 (854)
|||+++++.++ |++++.+..++++++++++..+++ +++..+++++..+.|..++.+ |++ ++++++..
T Consensus 179 l~~~gi~~~~l---g~~~~~~~~l~~~l~~~~~~~~~~----~l~~~~l~~~~~~~l~~l~~~-g~~-~~l~~~~~---- 245 (344)
T 1z7m_A 179 IGSAKFFQRLC---QLADGSTELLTELLLKKDLSGLNA----FIEKNNFSKELRGLLKEIFIT-NEL-SRLENLVT---- 245 (344)
T ss_dssp EEEHHHHHHHH---HHTTTCHHHHHHHHHTTCHHHHHH----HHTTSCCCHHHHHHHHHHTTC-CCH-HHHHHHHH----
T ss_pred ECCHHHHHHHh---CCCHHHHHHHHHHHHhhCHHHHHH----HHHhcCCCHHHHHHHHHHHhc-CCH-HHHHHHHH----
Confidence 99999999988 778888889999999988776654 445578888888889889888 876 78887753
Q ss_pred hhcccccccccchHHHHHHHhhhccccceeeeeccccccCccccc----------ccccccCCcccccccccCCcccCcc
Q 003041 664 FLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG----------VGSIAAGGRYDNLIGMFGTKQVPAV 733 (854)
Q Consensus 664 ~~~~~~~~~al~~L~~l~~~l~~~gv~~~I~~D~sl~rgl~YYtG----------~~~Ia~GGRYD~Li~~fg~~~~pAv 733 (854)
+..+..+.+++++|+.++++|+.+| +|.|||+++||++|||| ..+||+|||||+|++.|| ++.|||
T Consensus 246 l~~~~~~~~~l~~l~~l~~~L~~~g---~~~~D~~lvrgldYYtG~vFe~~~~~~~~~i~~GGRYD~L~~~fg-~~~pav 321 (344)
T 1z7m_A 246 NTKDDVLISSFDQLKEFSEKLSMIK---PIIIDLGMVPKMDYYTDLMFKAYSSAANQPILSGGRYDQLLSNFQ-EEAFAI 321 (344)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTTS---CCEECTTCCCSSTTCCSEEEEEEETTEEEEEEEEEECHHHHHTSS-SCCCCE
T ss_pred hhcchhhHHHHHHHHHHHHHHhhCC---CEEEeCCCCCCCccCCCeEEEEEECCCCCeEeeCccHHHHHHHhC-CCCCeE
Confidence 2223345678999999999999988 89999999999999999 138999999999999999 689999
Q ss_pred ceehhhHHHHHHHHHH
Q 003041 734 GVSLGIERVFTIMEQI 749 (854)
Q Consensus 734 GfsigieRL~~~L~~~ 749 (854)
|||+++|||+.++.++
T Consensus 322 Gfaiglerl~~~l~~~ 337 (344)
T 1z7m_A 322 GFCCHMDTILKALERQ 337 (344)
T ss_dssp EEEEEHHHHHHHHHHH
T ss_pred EEEEEHHHHHHHHHhc
Confidence 9999999999988764
No 21
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=100.00 E-value=7.3e-45 Score=429.98 Aligned_cols=412 Identities=16% Similarity=0.144 Sum_probs=297.1
Q ss_pred CCCCCCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC---chhhhhhhhccCCceeeec
Q 003041 428 RRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRY 504 (854)
Q Consensus 428 ~~~~~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~~G~~l~LRp 504 (854)
++..+.++|++||+|.++.++++|++.++++|+++||++|.||+|++.++|.. +|++ .++||+|.|++|+.++|||
T Consensus 30 g~~~~~~~G~~~~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~-sG~~~~~~~~m~~~~d~~~~~~~LrP 108 (572)
T 2j3l_A 30 GYIRQVAAGIYSYLPLANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKE-SGRYETYGPNLYRLKDRNDRDYILGP 108 (572)
T ss_dssp TSEEEEETTEEEECHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHHH-HSHHHHSCTTSCEEECTTCCEEEECS
T ss_pred CCccccCCCeeeeCCHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHh-cCCccccchheEEEecCCCCeEEEcc
Confidence 34456789999999999999999999999999999999999999999999864 5764 5789999999999999999
Q ss_pred ccccchhhhhhhc----cccchhhhhhhhhhcccCC-CCc--cccccccccccccccccccCCChhh---HHHHHHHhhh
Q 003041 505 DLTVPFARYVAMN----GLTSFKRHQIAKVYRRDNP-SKG--RYREFYQCDFDIAGQYERMGPDFEV---VKILTELLNE 574 (854)
Q Consensus 505 DlT~~~aR~~a~~----~~~p~K~y~ig~VfR~e~p-~~G--r~REf~Q~d~eiig~~~~~~aDaEv---I~l~~eil~~ 574 (854)
+.|++++|+++.+ +.+|+|+||+|+|||+|++ +.| |.|||+|+|+|+||.+. ..+|+|+ +.++.++|+.
T Consensus 109 ~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~Gl~R~ReF~q~d~~~f~~~~-~~~~~e~~~~~~~~~~~~~~ 187 (572)
T 2j3l_A 109 THEETFTELIRDEINSYKRLPLNLYQIQTKYRDEKRSRSGLLRGREFIMKDGYSFHADE-ASLDQSYRDYEKAYSRIFER 187 (572)
T ss_dssp CCHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCCTGGGSCSEEEEEEEEEEESSH-HHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhhccChhhcCHhhheecCeeccCcCcccCccccceeEEeeeEEEcCCH-HHHHHHHHHHHHHHHHHHHH
Confidence 9999999988764 4679999999999999987 577 99999999999999832 2356775 5589999999
Q ss_pred cCCCcceeeechhhhhhhhhhh------------------cCCCccch-hhhcc----------chhhh---hhhhHHHH
Q 003041 575 LDIGDYEIKLNHRLLLDGMLEI------------------CGVPSEKF-RTICS----------SIDKL---DKQSFEQI 622 (854)
Q Consensus 575 Lgl~~~~i~Lnh~~ll~~il~~------------------~gi~~~~~-~~v~~----------~l~kl---~k~~~~~i 622 (854)
||++ |.+.+||++.+...+++ |+...... ...+. .+.+. +..+.+
T Consensus 188 lgl~-~~~~~~~~g~~g~~~s~E~~~~~~~ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~-- 264 (572)
T 2j3l_A 188 CGLE-FRAIIGDGGAMGGKDSKEFMAISEIGEDTICYSTESDYAANLEMATSLYTPKKSHETQLDLEKIATPEVGTIA-- 264 (572)
T ss_dssp TTCC-EEEEECCGGGGTCSSEEEEEEECTTCSEEEEEESSSSCEEETTTCCCCCCCCCCCCCCCCCEEEECTTCCSHH--
T ss_pred cCCc-EEEEecccccCCCcccEEEEEEcCCCcceEEEeCCCCcccchhhhhcccccccccccccccceecCCCCCcHH--
Confidence 9996 99999999988876532 44321100 00000 00000 001122
Q ss_pred HHHHHHhcCcceeeccccccc--------ccccCChHHHHHHHhhhcchhhcc-cccccccchHHHHHH----Hhhhccc
Q 003041 623 KKEMVEEKGLSVETADRIGTF--------VKERGSPLVLLSKLRQEGSLFLEN-SSAKLALDDLEILFQ----ALEKSKC 689 (854)
Q Consensus 623 ~~~L~~~~gl~~~~~~~L~~l--------~~~~g~~~~vl~~l~~~~~~~~~~-~~~~~al~~L~~l~~----~l~~~gv 689 (854)
++.+.++++...+.+...+ +..+|+..--..++.+ .... .......+++..+.. ++..+|+
T Consensus 265 --~l~~~lg~~~~~i~K~l~~~~~~~~~~vli~gd~el~~~kl~~----~l~~~~l~~a~~~el~~~~g~~~g~~~p~gl 338 (572)
T 2j3l_A 265 --EVANFFEVEPQRIIKSVLFIADEEPVMVLVRGDHDVNDVKLKN----FLGADFLDEATEEDARRVLGAGFGSIGPVNV 338 (572)
T ss_dssp --HHHHHHTCCGGGBEEEEEEEETTEEEEEEEETTCCBCHHHHHH----HHTCSCEEECCHHHHHHHHSSCTTSCCSTTC
T ss_pred --HHHHHhCcCHHHeEEEEEEEeCCcEEEEEeeCccccCHHHHHH----hhCCCccccCCHHHHHHhhCCCccccCCccC
Confidence 3344455554332221111 0123332000122221 1111 111223345665554 4444544
Q ss_pred --cceeeeeccccc--------------------cCccccc------------ccccccCCccc-----------ccc--
Q 003041 690 --IDKVVFDLSLAR--------------------GLDYYTG------------VGSIAAGGRYD-----------NLI-- 722 (854)
Q Consensus 690 --~~~I~~D~sl~r--------------------gl~YYtG------------~~~Ia~GGRYD-----------~Li-- 722 (854)
...+.+|+++++ |.+||++ ..++| ||||| +|-
T Consensus 339 ~~~i~~~iD~sl~r~~~~~~ga~~~~~~~~~~~~grd~~~~~~~el~~~~~G~~~~~~-gg~~~~~~~ievg~~f~Lg~~ 417 (572)
T 2j3l_A 339 SEDVKIYADLAVQDLANAIVGANEDGYHLTNVNPDRDFQPISYEDLRFVQEGDPSPDG-NGVLAFTKGIEIGHIFKLGTR 417 (572)
T ss_dssp CTTCEEEEETTTTTCCSEEEECSSTTEEEEEECBTTTBCCSEEECCBCCCTTCBCTTS-SSBEEEEEEEEEEEEEEEETH
T ss_pred CCCCcEEEehhhhcCCceEEccCCCCceeeccccccCcCcCcHHHHHHHhcCCccccc-CCcceeccceEEEEEeccCcc
Confidence 247899999998 5566655 11334 36666 221
Q ss_pred --ccc-------CC-cccCcc-ceehhhHHHHHHHHHHHHhhh-hcccc--chhhhhhhhcC---C-CccchHHHHHHHh
Q 003041 723 --GMF-------GT-KQVPAV-GVSLGIERVFTIMEQIQKERN-QIIRA--TETQVLVGLLG---D-KLPLAAELVSELW 784 (854)
Q Consensus 723 --~~f-------g~-~~~pAv-GfsigieRL~~~L~~~~~~~~-~~~~~--~~~dVlV~~~~---~-~~~~a~~la~~Lr 784 (854)
+.| ++ +..|++ ||+||+||++.+|.+++.+.. ..|++ +|++|+|++++ + ....+.+++++||
T Consensus 418 ys~~~~~~~~~~~g~~~~p~~g~~giGveRli~~l~e~~~d~~g~~~p~~~ap~~v~vi~~~~~~~~~~~~a~~l~~~Lr 497 (572)
T 2j3l_A 418 YSDAMGATVLDENGREKSVIMGCYGIGVSRLLSAIVEQNADERGINWPTGIAPFDLHVVQMNVKDEYQTKLSQEVEAMMT 497 (572)
T ss_dssp HHHHHTCEEECTTSCEEECEEEEEEEEHHHHHHHHHHHHEETTEECCCTTTSSCSEEEEESCTTCHHHHHHHHHHHHHHH
T ss_pred cccccCCEEECCCCcEEeeeeeccccCHHHHHHHHHHhcCcccCcccCCCcCCeEEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 223 44 357888 699999999999887653222 23544 67899999987 3 4678899999999
Q ss_pred hhccceeeeeh-hhHHHHHhhhhcCCCceEEEeecccccccceeeeccccchhhhcchhhhHHHHHHhhc
Q 003041 785 NAKVKAEYMVH-KKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 853 (854)
Q Consensus 785 ~~GI~ael~~~-~~l~k~l~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~ 853 (854)
++||+|++++. .++++++++|++.|+||+|+||++| ++|+|+||++.++++..|++++++++|+ +++
T Consensus 498 ~~gi~v~~d~~~~~~g~k~~~a~~~g~p~~iivG~~e-~~~~v~vk~~~~~~q~~v~~~~l~~~l~-~~~ 565 (572)
T 2j3l_A 498 EAGYEVLVDDRNERAGVKFADADLIGCPIRITVGKKA-VDGVVEVKIKRTGEMLEVRKEELESTLS-ILM 565 (572)
T ss_dssp HTTCCEEEECSSCCHHHHHHHHHHHCCSEEEEECGGG-GGTEEEEEETTTCCEEEEEHHHHHHHHH-HHC
T ss_pred hCCCeEEEeCCCCCHhHHHHHHHhcCCCEEEEEcccc-cCCeEEEEEcCCCcEEEEeHHHHHHHHH-HHh
Confidence 99999999984 6899999999999999999999999 9999999999999999999999999998 764
No 22
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=100.00 E-value=3.3e-43 Score=398.47 Aligned_cols=348 Identities=14% Similarity=0.182 Sum_probs=278.6
Q ss_pred CCCCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC---chhhhhhhhccCCceeeeccc
Q 003041 430 LPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDL 506 (854)
Q Consensus 430 ~~~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~~G~~l~LRpDl 506 (854)
..+.++|++||+|.++.++++|++.++++|+++||++|.||+|++.++|.. +|++ .++||+ .|++|+.++|||+.
T Consensus 15 ~~~~~~G~~d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~-sG~~~~~~~em~~-~d~~~~~~~LrP~~ 92 (401)
T 1evl_A 15 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEK-TGHWDNYKDAMFT-TSSENREYCIKPMN 92 (401)
T ss_dssp CCTTSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHH-HTHHHHSGGGCCE-EEETTEEEEECSCS
T ss_pred ecCCCCcceEECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHh-cCcHhhhchhhEe-EecCCceEEEcCCC
Confidence 356799999999999999999999999999999999999999999999977 7875 578999 89999999999999
Q ss_pred ccchhhhhhhc----cccchhhhhhhhhhcccC--CCCc--cccccccccccccccccccCCCh---hhHHHHHHHhhhc
Q 003041 507 TVPFARYVAMN----GLTSFKRHQIAKVYRRDN--PSKG--RYREFYQCDFDIAGQYERMGPDF---EVVKILTELLNEL 575 (854)
Q Consensus 507 T~~~aR~~a~~----~~~p~K~y~ig~VfR~e~--p~~G--r~REf~Q~d~eiig~~~~~~aDa---EvI~l~~eil~~L 575 (854)
|++++|.++++ +.+|+|+||+|+|||+|. |+.| |.|||+|+|+|+|+.++ .+|+ |++.++.++++.|
T Consensus 93 ~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~p~~Gl~R~reF~q~d~~~f~~~~--~~~~e~~e~i~~~~~~~~~l 170 (401)
T 1evl_A 93 CPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEE--QIRDEVNGCIRLVYDMYSTF 170 (401)
T ss_dssp HHHHHHHHTSSCCBGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGG--GHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHhhhhhhhhCChhhccccceecCCCCcccccccccCcEEecceEEeCCHH--HHHHHHHHHHHHHHHHHHHc
Confidence 99999999864 367999999999999998 4888 99999999999999643 3466 5899999999999
Q ss_pred CCCcceeeechhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHH---HHHHHhcCcceeecccccccccccCChHH
Q 003041 576 DIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIK---KEMVEEKGLSVETADRIGTFVKERGSPLV 652 (854)
Q Consensus 576 gl~~~~i~Lnh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~---~~L~~~~gl~~~~~~~L~~l~~~~g~~~~ 652 (854)
|++++.+++|+.+ -..+|. ...|+... .++++..|++.+.. .+.
T Consensus 171 gl~~~~~~~~~~~-----~~~~~~----------------~~~~~~a~~~~~~~l~~~g~~~~~~---------~~~--- 217 (401)
T 1evl_A 171 GFEKIVVKLSTRP-----EKRIGS----------------DEMWDRAEADLAVALEENNIPFEYQ---------LGE--- 217 (401)
T ss_dssp TCSCCEEEEECCC-----SSCCSC----------------HHHHHHHHHHHHHHHHHTTCCCEEE---------TTC---
T ss_pred CCCceEEEEecCC-----cccCCC----------------HHHHHHHHHHHHHHHHhcCCCceec---------CCC---
Confidence 9988999999864 111221 11233221 12222233321100 000
Q ss_pred HHHHHhhhcchhhcccccccccchHHHHHHHhhhccccceeeeeccccc--cCccccc--c-c---ccccCCcccccccc
Q 003041 653 LLSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLAR--GLDYYTG--V-G---SIAAGGRYDNLIGM 724 (854)
Q Consensus 653 vl~~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~gv~~~I~~D~sl~r--gl~YYtG--~-~---~Ia~GGRYD~Li~~ 724 (854)
. ..+|. .+|+.+++ |.+||+| . + +...|+||+. .
T Consensus 218 ---------~----------------------~~y~~----~~d~~~~~~~G~~~~~gt~~~d~~l~~~~~~~y~~---~ 259 (401)
T 1evl_A 218 ---------G----------------------AFYGP----KIEFTLYDCLDRAWQCGTVQLDFSLPSRLSASYVG---E 259 (401)
T ss_dssp ---------S----------------------BTTBC----EEEEEEECTTCCEEEEEEEEEESSHHHHTTCCEEC---T
T ss_pred ---------c----------------------cccCC----CcCeEEEecCCCeEEeeeeeeccccccccCCEEEC---C
Confidence 0 11221 36777877 9999999 1 1 4567889875 3
Q ss_pred cCCcccCccce-eh--hhHHHHHHHHHHHHhhhhccccchhhhhhhhcCC-CccchHHHHHHHhhhccceeeeeh-hhHH
Q 003041 725 FGTKQVPAVGV-SL--GIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVH-KKVM 799 (854)
Q Consensus 725 fg~~~~pAvGf-si--gieRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~~-~~l~ 799 (854)
.|++..|++|+ ++ |+||++.++.+++.+..+.|. +|++|+|+++++ ....+.++++.||++||+|++++. .+++
T Consensus 260 ~g~~~~p~~~~~~~~GgieRli~~l~e~~~~~~p~~~-ap~~v~vi~~~~~~~~~a~~l~~~Lr~~Gi~v~~d~~~~~~~ 338 (401)
T 1evl_A 260 DNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWL-APVQVVIMNITDSQSEYVNELTQKLSNAGIRVKADLRNEKIG 338 (401)
T ss_dssp TSCEECCEEEEEEEEEEHHHHHHHHHHHHTTCCCTTT-CSSCEEEEESSGGGHHHHHHHHHHHHHTTCCEEEECCSSCHH
T ss_pred CCCCcCcEEEEecCCCcHHHHHHHHHHHhCCcCCCCC-CCeEEEEEecCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHH
Confidence 45567899987 77 999999999886543222232 678999999986 667899999999999999999874 6899
Q ss_pred HHHhhhhcCCCceEEEeecccccccceeeeccccchhhhcchhhhHHHHHHhhc
Q 003041 800 KLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 853 (854)
Q Consensus 800 k~l~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~ 853 (854)
+++++|++.|+||+|+||++|+++|+|+||++.++++..|++++++++|++.++
T Consensus 339 ~k~~~A~~~g~p~~iiiG~~e~~~~~v~vk~~~~~~q~~v~~~el~~~l~~~~~ 392 (401)
T 1evl_A 339 FKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIR 392 (401)
T ss_dssp HHHHHHHHTTCSEEEEECHHHHHHTEEEEEETTSCEEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEECcchhhCCeEEEEECCCCceEEeeHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999987764
No 23
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=100.00 E-value=1.5e-44 Score=388.61 Aligned_cols=255 Identities=22% Similarity=0.245 Sum_probs=215.0
Q ss_pred HHhHHHHH--HHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhhhccCCceeeecccccchhhhhhh-ccc-cchhh
Q 003041 449 EKAFSIIT--EVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAM-NGL-TSFKR 524 (854)
Q Consensus 449 ~~i~~~l~--~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D~~G~~l~LRpDlT~~~aR~~a~-~~~-~p~K~ 524 (854)
+.+++.++ ++|++|||++|.||+||+.++|.. + +|.|++|+.++||||+|+|++ .-.. +.. .|+|+
T Consensus 4 ~~le~~~r~~~~~~~~Gy~eI~tP~le~~~l~~~----d-----~f~d~~g~~l~LRpd~T~~~a-~~~~~~~~~~p~R~ 73 (275)
T 1usy_A 4 LDFEKVFSFYSKATKKGFSPFFVPALEKAEEPAG----N-----FFLDRKGNLFSIREDFTKTVL-NHRKRYSPDSQIKV 73 (275)
T ss_dssp CCHHHHHHHHHHHHHTTCEECCCCSEEECSSCCS----S-----CEEETTSCEEEECCCHHHHHH-HHHTTCTTCCCEEE
T ss_pred HhHHHHHHHHHHHHHCCCEEecCccccchhhhcc----c-----ccCCCCCCEEEeCCcChHHHH-HHHhhcCCCCceEE
Confidence 34566667 999999999999999999999854 1 567999999999999999999 2111 235 79999
Q ss_pred hhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhhhcCCCcceeeechhhhhhhhhhhcCCCccch
Q 003041 525 HQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIGDYEIKLNHRLLLDGMLEICGVPSEKF 604 (854)
Q Consensus 525 y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~Lgl~~~~i~Lnh~~ll~~il~~~gi~~~~~ 604 (854)
||+|+|||+|+|+. |||+|+|+||||..++ .+|+|+|.++.++++.||++++.|+|||+++++.+++. ++++.+
T Consensus 74 ~y~g~vfR~e~~~~---Ref~Q~g~ei~g~~~~-~~DaEvi~l~~~~l~~lgl~~~~i~l~~~~~~~~~~~~--~~~~~~ 147 (275)
T 1usy_A 74 WYADFVYRYSGSDL---VAEYQLGLEKVPRNSL-DDSLEVLEIIVESASEFFEGPVIVEIGHTGVYEDLLKE--IPKDLH 147 (275)
T ss_dssp ECCEEEEEEETTEE---EEEEEEEEEEESCCSH-HHHHHHHHHHHHHHHHHCCSCEEEEEEETTHHHHHHTT--SCGGGH
T ss_pred EEeceEEecCCCCC---CeeeEeCEEEecCCCc-hhHHHHHHHHHHHHHHcCCCCeEEEeCCHHHHHHHHHh--CCHHHH
Confidence 99999999999876 9999999999998654 57999999999999999998999999999999999975 777778
Q ss_pred hhhccchhhhhhhhHHHHHHHHHHhcCcceeecccccccccccCChHHHHHHHhhhcchhhcccccccccchHHHHHHHh
Q 003041 605 RTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLENSSAKLALDDLEILFQAL 684 (854)
Q Consensus 605 ~~v~~~l~kl~k~~~~~i~~~L~~~~gl~~~~~~~L~~l~~~~g~~~~vl~~l~~~~~~~~~~~~~~~al~~L~~l~~~l 684 (854)
..++++++++++..+++ +++..+++....+.+..++.+.|++ ++++++. .+ .+++++|+.++++|
T Consensus 148 ~~l~~~l~~~~~~~~~~----~l~~~~l~~~~~~~l~~l~~~~g~~-~~l~~l~-------~~---~~~l~~l~~l~~~l 212 (275)
T 1usy_A 148 EKVLNLIDTKNLAEIEF----LSHMKKIDLSRVEKIIEDSIYRRSP-EHLKTMD-------LP---LSVREDLLSASSFL 212 (275)
T ss_dssp HHHHHHHHTTCHHHHHH----HHHHTCCCCTHHHHHHHHHHHCCSG-GGGGTSC-------CC---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHH----HHHhcCCCHHHHHHHHHHHHhhCCH-HHHHHHh-------cC---HHHHHHHHHHHHHH
Confidence 88999999988776654 3445788877888888888888876 4544421 11 24689999999999
Q ss_pred h-hccccceeeeeccccccCccccc----------ccccccCCcccccccccCCcccCccceehhhHHH
Q 003041 685 E-KSKCIDKVVFDLSLARGLDYYTG----------VGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERV 742 (854)
Q Consensus 685 ~-~~gv~~~I~~D~sl~rgl~YYtG----------~~~Ia~GGRYD~Li~~fg~~~~pAvGfsigieRL 742 (854)
+ .+| ..++.|||+++||++|||| .++|++|||||++ +.||||||+++||+
T Consensus 213 ~~~~g-~~~~~~D~~lvRgldYYtG~vFe~~~~~~~~~i~~GGRYD~l-------~~pavGfsig~er~ 273 (275)
T 1usy_A 213 QEKFP-TVSVEIDLTLARTIEEYCGLIFTIYDTSSSRLVAAGGEYTVN-------GEKGVGGSIFLEGK 273 (275)
T ss_dssp HHHCS-SSEEEECCCCGGGGGTCSSEEEEEEETTTTEEEEEEEEEEET-------TEEEEEEEEEEEEE
T ss_pred HHhcC-CCeEEEeccccCCCCccCCeEEEEEECCCCCeEeeecCCCCC-------CCCEEEEEEEeecc
Confidence 9 999 5589999999999999999 2489999999996 58999999999986
No 24
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=100.00 E-value=5e-44 Score=411.27 Aligned_cols=390 Identities=17% Similarity=0.150 Sum_probs=287.5
Q ss_pred CCCCCCchHHHHHHHHHHHhhcccCCCCCCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccC
Q 003041 404 FDPRDPEFDGLLTKIREIVESNESRRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYG 483 (854)
Q Consensus 404 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g 483 (854)
.+|.+.+-.......+ .+++.+.|+|++||+|.++.++++|++.++++|+++||+||.||+|++.++|.. +|
T Consensus 33 ~~~~~a~~~~h~ll~r-------~g~i~~~~~G~~d~lP~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el~~~-sg 104 (458)
T 2i4l_A 33 ENPKEAEIVSHRLMLR-------AGMLRQEAAGIYAWLPLGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWRE-SG 104 (458)
T ss_dssp SCCTTCCSHHHHHHHH-------TTCEEEEETTEEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHH-HT
T ss_pred cChhhcCcchHHHHhh-------cCCeeccCCcceEECCCHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcHHHHHh-cC
Confidence 5666655444333222 256678899999999999999999999999999999999999999999999965 56
Q ss_pred CC---chhhhhhhhccCCceeeec---ccccchhhhhhh-ccccchhhhhhhhhhccc-CCCCc--cccccccccccccc
Q 003041 484 ED---SKLIYDLADQGGELCSLRY---DLTVPFARYVAM-NGLTSFKRHQIAKVYRRD-NPSKG--RYREFYQCDFDIAG 553 (854)
Q Consensus 484 ~~---~k~~y~~~D~~G~~l~LRp---DlT~~~aR~~a~-~~~~p~K~y~ig~VfR~e-~p~~G--r~REf~Q~d~eiig 553 (854)
++ .++||+|.|++|+.++||| |+|.+++|...+ ++.+|+|+||+|+|||+| +|+.| |.|||+|+|+|+||
T Consensus 105 ~~d~~~~em~~~~d~~~~~~~LrPt~ee~t~~i~r~~~~s~~~lP~rl~~ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~ 184 (458)
T 2i4l_A 105 RYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRAYIKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFD 184 (458)
T ss_dssp HHHHSCTTSEEEECTTCCEEEECSCCHHHHHHHHHHHCCBGGGCSEEEEEEEEEECCCSSCBTGGGBCSEEEEEEEEEEE
T ss_pred CccccccceEEEEeCCCCeEEECCCChHHHHHHHHHHHhhccccCeeeEEecCEeeCCCCCCCCcccccceEEeEEEEEE
Confidence 53 5789999999999999999 899999998875 467899999999999999 89999 99999999999999
Q ss_pred cccccCCChhhH---HHHHHHhhhcCCCcceeeechhhhhhhhhhhc-----CCCccchhhhccchhhhhhhhHHHHHHH
Q 003041 554 QYERMGPDFEVV---KILTELLNELDIGDYEIKLNHRLLLDGMLEIC-----GVPSEKFRTICSSIDKLDKQSFEQIKKE 625 (854)
Q Consensus 554 ~~~~~~aDaEvI---~l~~eil~~Lgl~~~~i~Lnh~~ll~~il~~~-----gi~~~~~~~v~~~l~kl~k~~~~~i~~~ 625 (854)
..+. .+|+|++ .++.++|++||++ +.+.+||++.+.+.+++. ...++.. ..| -.... .+|+
T Consensus 185 ~~~~-~ad~e~~~~~~~~~~i~~~lGl~-~~~~~~~~g~~gg~~s~e~~~l~~~ged~i-~~~--~~~~~-~n~~----- 253 (458)
T 2i4l_A 185 VDEA-GARKSYNKMFVAYLRTFARMGLK-AIPMRAETGPIGGDLSHEFIVLAETGESGV-YID--RDVLN-LPVP----- 253 (458)
T ss_dssp SSHH-HHHHHHHHHHHHHHHHHHTTTCC-EEEEECCCCSSCSSCEEEEEEECTTCSEEE-EEE--GGGGG-CCCC-----
T ss_pred CCHH-HHHHHHHHHHHHHHHHHHHcCCc-eEEEEccccccCCccchhhhhhhhcCcceE-Eec--ccccc-cCHH-----
Confidence 6332 4577776 4599999999996 999999999888766532 2222110 001 00000 0010
Q ss_pred HHHhcCcceeecccccccccccCChHHHHHHHhhhcchhhcccccccccchHHHHHHHhhhccccceeeeeccccccCcc
Q 003041 626 MVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDY 705 (854)
Q Consensus 626 L~~~~gl~~~~~~~L~~l~~~~g~~~~vl~~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~gv~~~I~~D~sl~rgl~Y 705 (854)
.++.. +..+..++++.... +.. ..... ++....+ | ..+.+|++++||++
T Consensus 254 ----------~~~~~-----~~~~l~~~l~~~~~----~~~---~~~~~-~~g~~~~-----~--~~~~~~l~~~rgl~- 302 (458)
T 2i4l_A 254 ----------DENVD-----YDGDLTPIIKQWTS----VYA---ATEDV-HEPARYE-----S--EVPEANRLNTRGIE- 302 (458)
T ss_dssp ----------CTTCC-----TTSCCHHHHHHHHH----SCE---EETTT-CCTTHHH-----H--HSCTTTEEEEEEEE-
T ss_pred ----------HHhcc-----ccHhHHHHHhcCch----hhh---cChhh-ccccccc-----C--CCCCcCceeeeeec-
Confidence 00000 00011123322210 100 00000 0111110 0 13557888888877
Q ss_pred ccc-------ccccccCCcccccccccCCcccC--ccceehhhHHHHHHHHHHHHhh-hhcccc--chhhhhhhhcC---
Q 003041 706 YTG-------VGSIAAGGRYDNLIGMFGTKQVP--AVGVSLGIERVFTIMEQIQKER-NQIIRA--TETQVLVGLLG--- 770 (854)
Q Consensus 706 YtG-------~~~Ia~GGRYD~Li~~fg~~~~p--AvGfsigieRL~~~L~~~~~~~-~~~~~~--~~~dVlV~~~~--- 770 (854)
+| ..+++.||||++. +| ++.| ++||+||+||++.++.++..+. ...|++ +|++|+|++.+
T Consensus 303 -~G~iFelg~~~s~~~g~ry~~~---~G-~~~p~~~~gfgiGveRli~al~e~~~d~~g~~~p~~~ap~~v~vi~~~~~~ 377 (458)
T 2i4l_A 303 -VGQIFYFGTKYSDSMKANVTGP---DG-TDAPIHGGSYGVGVSRLLGAIIEACHDDNGIIWPEAVAPFRVTILNLKQGD 377 (458)
T ss_dssp -EEEEEEEETHHHHHTTCEEECT---TS-CEEECEEEEEEEEHHHHHHHHHHHSEETTEECCCTTTCSCSEEEEESSTTC
T ss_pred -cCcEEEecccccccCCcEEECC---CC-CEeceEEeeecccHHHHHHHHHHhhccccCCcCCcccCCceEEEEecCCCC
Confidence 66 2378899999764 34 4566 7899999999999987764322 234665 57899999885
Q ss_pred C-CccchHHHHHHHhhhccceeeeeh-hhHHHHHhhhhcCCCceEEEeecccccccceeeeccccchhhhcchhhhHHHH
Q 003041 771 D-KLPLAAELVSELWNAKVKAEYMVH-KKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEI 848 (854)
Q Consensus 771 ~-~~~~a~~la~~Lr~~GI~ael~~~-~~l~k~l~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L 848 (854)
+ ....+.+++++||++|++|++++. .++++++++|++.|+||+|+||++|+++|+|+||++.++++..|++++++++|
T Consensus 378 ~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~~~g~k~~~ad~~g~p~~iivG~~e~~~g~v~vr~r~~~~~~~v~~~~l~~~l 457 (458)
T 2i4l_A 378 AATDAACDQLYRELSAKGVDVLYDDTDQRAGAKFATADLIGIPWQIHVGPRGLAEGKVELKRRSDGARENLALADVVARL 457 (458)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEECSSCCHHHHHHHHHHHTCSEEEEECHHHHTTTEEEEEETTTCCEEEEETTTTTCC-
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEECCCCCHHHHHHHHHhcCCCEEEEECCchhhCCEEEEEECCCCcEEEEeHHHHHHhh
Confidence 2 467899999999999999999984 68999999999999999999999999999999999999999999999998765
No 25
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=100.00 E-value=1.5e-42 Score=414.80 Aligned_cols=358 Identities=20% Similarity=0.233 Sum_probs=282.4
Q ss_pred CCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC---chhhhhhhhccC-Cceeeeccccc
Q 003041 433 LPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGG-ELCSLRYDLTV 508 (854)
Q Consensus 433 ~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~~G-~~l~LRpDlT~ 508 (854)
.++|++||+|.++.++++|++.++++|+++||++|.||+|++.++|.. +|++ .++||+|.|.+| +.++||||.|+
T Consensus 259 ~~~G~~~~lP~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~-sG~~d~~~~~mf~~~d~~~~~~~~LrP~~~~ 337 (645)
T 1nyr_A 259 VGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKT-SGHWDHYQEDMFPPMQLDETESMVLRPMNCP 337 (645)
T ss_dssp TEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHH-HTHHHHCTTSSCCCEEETTTEEEEECSSSHH
T ss_pred CCCceeEECCCHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHhh-CCCccccccCcceeEecCCCeEEEeCCCCCH
Confidence 489999999999999999999999999999999999999999999976 5764 478999999999 99999999999
Q ss_pred chhhhhhhc----cccchhhhhhhhhhcccCCC--Cc--cccccccccccccccccccCCC--hhhHHHHHHHhhhcCCC
Q 003041 509 PFARYVAMN----GLTSFKRHQIAKVYRRDNPS--KG--RYREFYQCDFDIAGQYERMGPD--FEVVKILTELLNELDIG 578 (854)
Q Consensus 509 ~~aR~~a~~----~~~p~K~y~ig~VfR~e~p~--~G--r~REf~Q~d~eiig~~~~~~aD--aEvI~l~~eil~~Lgl~ 578 (854)
+++|+++++ +.+|+|+||+|+|||+|+++ .| |.|||+|+|+|+||.+++ ..| +|++.++.++|+.||++
T Consensus 338 ~~~~~~~~~~~syr~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~Q~d~~~f~~~~~-~~d~~~e~i~~~~~~l~~lGl~ 416 (645)
T 1nyr_A 338 HHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQ-IKEEFKRVVNMIIDVYKDFGFE 416 (645)
T ss_dssp HHHHHHHTSCCBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGG-HHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhhhhhccCCCeEEEEeccEEecCCCccccCcceeeeEEEccEEEEcCHHH-HHHHHHHHHHHHHHHHHHcCCC
Confidence 999999865 36799999999999999886 66 999999999999998665 356 89999999999999998
Q ss_pred cceeeechhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHH---HHHHHhcCcceeecccccccccccCChHHHHH
Q 003041 579 DYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIK---KEMVEEKGLSVETADRIGTFVKERGSPLVLLS 655 (854)
Q Consensus 579 ~~~i~Lnh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~---~~L~~~~gl~~~~~~~L~~l~~~~g~~~~vl~ 655 (854)
+|.+++|++... ..-..+|. ...|++.. ++.++..|++......+.. ++|+..
T Consensus 417 ~~~~~l~~~~~~-~~e~~~g~----------------~e~~~~~~~~l~~~l~~~g~~~~~~~~~~~---~ygpki---- 472 (645)
T 1nyr_A 417 DYSFRLSYRDPE-DKEKYFDD----------------DDMWNKAENMLKEAADELGLSYEEAIGEAA---FYGPKL---- 472 (645)
T ss_dssp CEEEEEEECCCC-CSSSSSCC----------------HHHHHHHHHHHHHHHHHHCCCCCCEESCSB---TTBCEE----
T ss_pred eEEEEEeCCCcc-cchhhcCC----------------hHHHHHHHHHHHHHHHHcCCCeEecCCCCc---eeCCcc----
Confidence 899999997421 00111121 11233221 2233445555433332222 223210
Q ss_pred HHhhhcchhhcccccccccchHHHHHHHhhhccccceeeeeccccccCc-ccccccccccCCcccccccccCCcccCcc-
Q 003041 656 KLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLD-YYTGVGSIAAGGRYDNLIGMFGTKQVPAV- 733 (854)
Q Consensus 656 ~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~gv~~~I~~D~sl~rgl~-YYtG~~~Ia~GGRYD~Li~~fg~~~~pAv- 733 (854)
.+ ....++.+. -.+ .++++|+.+.++++ ||+|.. |+++.|++
T Consensus 473 -------~~----~~~d~lg~~-------~~~---gtiq~D~~l~~~~d~~Y~~~~---------------g~~~~P~~i 516 (645)
T 1nyr_A 473 -------DV----QVKTAMGKE-------ETL---STAQLDFLLPERFDLTYIGQD---------------GEHHRPVVI 516 (645)
T ss_dssp -------EE----EECCTTSCC-------EEE---EEEEEESSHHHHTTCCEECTT---------------SCEECCEEE
T ss_pred -------ce----ehhhhhCch-------hhc---ceEEeecccccccceEEECCC---------------CCccCcEEE
Confidence 00 011122211 012 37999999999999 899831 23467887
Q ss_pred --ceehhhHHHHHHHHHHHHhhhhccccchhhhhhhhcC-C-CccchHHHHHHHhhhccceeeee-hhhHHHHHhhhhcC
Q 003041 734 --GVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLG-D-KLPLAAELVSELWNAKVKAEYMV-HKKVMKLIDRARES 808 (854)
Q Consensus 734 --GfsigieRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~-~-~~~~a~~la~~Lr~~GI~ael~~-~~~l~k~l~~A~~~ 808 (854)
|+..|+||++.+|.++..+..|.|. +|.||+|++++ + ...++.+++++||++||+|+++. +.++++++++|+..
T Consensus 517 h~~~~GgieR~i~~liE~~~~~~P~~l-ap~qv~vip~~~~~~~~~a~~i~~~Lr~~Gi~v~~D~~~~~~g~k~~~a~~~ 595 (645)
T 1nyr_A 517 HRGVVSTMERFVAFLTEETKGAFPTWL-APKQVQIIPVNVDLHYDYARQLQDELKSQGVRVSIDDRNEKMGYKIREAQMQ 595 (645)
T ss_dssp EEEEEEEHHHHHHHHHHHHTTCCCTTT-CSSCEEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred EeccCCcHHHHHHHHHHHhcCCCCCCC-CCceEEEEEcccHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHhc
Confidence 8888999999998876544334443 67999999998 5 67789999999999999999998 46899999999999
Q ss_pred CCceEEEeecccccccceeeeccccchhhhcchhhhHHHHHHhhc
Q 003041 809 KIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 853 (854)
Q Consensus 809 gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~ 853 (854)
|+||+|+||++|+++|+|+||++.++++..|+++++++.|++++.
T Consensus 596 g~p~~iivG~~e~~~~~V~vr~r~~~~~~~v~~~e~~~~l~~~~~ 640 (645)
T 1nyr_A 596 KIPYQIVVGDKEVENNQVNVRQYGSQDQETVEKDEFIWNLVDEIR 640 (645)
T ss_dssp TCSEEEEECHHHHHTTEEEEEETTSSCCCEEEHHHHHHHHHHHHH
T ss_pred CCCEEEEEccchhhCCEEEEEECCCCcEEEEEHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999987764
No 26
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=100.00 E-value=1.6e-40 Score=383.39 Aligned_cols=359 Identities=16% Similarity=0.208 Sum_probs=268.5
Q ss_pred CCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC---chhhhhhhhccCCceeeecccccc
Q 003041 433 LPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDLTVP 509 (854)
Q Consensus 433 ~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~~G~~l~LRpDlT~~ 509 (854)
.|+|++||+|.++.++++|++.++++|+++||++|.||+|++.++|.. +|++ .++||+| |++|+.++||||.|++
T Consensus 37 ~~~G~~d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~-sg~~~~~~~emy~~-d~~~~~l~LRP~~t~~ 114 (471)
T 3a32_A 37 TGAGVPLFSLGGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKV-SGHIEFYRNNMYLF-DIEGHEFAVKPMNCPY 114 (471)
T ss_dssp HCTTCCCBCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHH-TCCCTTGGGGSEEE-EETTEEEEECSCSHHH
T ss_pred cCCEEEEECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHhhh-ccCccccccceEEE-ecCCcEEEEccccHHH
Confidence 589999999999999999999999999999999999999999999976 4543 5889999 9999999999999999
Q ss_pred hhhhhhhc----c---ccchhhhhhhhhhcccCCC--Cc--cccccccccccccccccccCCC--hhhHHHHHHHhhh-c
Q 003041 510 FARYVAMN----G---LTSFKRHQIAKVYRRDNPS--KG--RYREFYQCDFDIAGQYERMGPD--FEVVKILTELLNE-L 575 (854)
Q Consensus 510 ~aR~~a~~----~---~~p~K~y~ig~VfR~e~p~--~G--r~REf~Q~d~eiig~~~~~~aD--aEvI~l~~eil~~-L 575 (854)
++|+++++ + .+|+|+||+|+|||+|.++ .| |.|||+|+|+|+||.++. ..| +|++.++.++|+. |
T Consensus 115 i~~~~~~~~~s~r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~~~~~-~~de~~e~i~~~~~~l~~~l 193 (471)
T 3a32_A 115 HILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIVPGGR-VIDVVYDVFEEMKLVLERLF 193 (471)
T ss_dssp HHHHHHHHHHHHGGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEEEGGG-HHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhhhhhccccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEEcChHH-HHHHHHHHHHHHHHHHHHhh
Confidence 99999864 3 6899999999999999988 88 999999999999998654 356 8999999999999 9
Q ss_pred CC----Ccceeeechhh--hh-hhhhhhcCCCccchhhhccchhhhhhhhHHHHHHHHHHhcCcceeecccccccccccC
Q 003041 576 DI----GDYEIKLNHRL--LL-DGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERG 648 (854)
Q Consensus 576 gl----~~~~i~Lnh~~--ll-~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~gl~~~~~~~L~~l~~~~g 648 (854)
|+ +++.+.+||+. ++ +.++ |... .+++..+...+.+.. .+...+++....+.+..|. |
T Consensus 194 Gl~~~~~~~~l~i~~~~~~~~~e~~~---g~~~--------~~d~~~~~l~~~~~~-~l~~~~~~~~~~~~~~~~~---g 258 (471)
T 3a32_A 194 KLGVSSETFKVRLSMSDKSLIGKEFM---GSKE--------EWEGAEEALREAASR-INEKYGIDIVELEGEAAFY---G 258 (471)
T ss_dssp CCCCSTTTEEEEEECCCGGGBTTTBC---SCHH--------HHHHHHHHHHHHHHH-HHHHHCCEEEEETTCSBTT---B
T ss_pred CCCcCCCCeEEEEecCCCCccccccc---CCHH--------HHHHHHHHHHHHHHH-HHHhcCCceEecccchhhC---C
Confidence 99 78999999984 22 2211 1110 112211112222211 2223455544433333322 2
Q ss_pred ChHHHHHHHhhhcchhhccccccc-ccchHHHHHHHhhhccccceeeeeccccccCc--ccc----ccc-ccccCCcccc
Q 003041 649 SPLVLLSKLRQEGSLFLENSSAKL-ALDDLEILFQALEKSKCIDKVVFDLSLARGLD--YYT----GVG-SIAAGGRYDN 720 (854)
Q Consensus 649 ~~~~vl~~l~~~~~~~~~~~~~~~-al~~L~~l~~~l~~~gv~~~I~~D~sl~rgl~--YYt----G~~-~Ia~GGRYD~ 720 (854)
+. +. ....+ .+ ++.++. .+| ++++|++++|+++ ||| |.- ++..|
T Consensus 259 p~------i~----~~l~d---~~~~l~~~~-------~~g---~~~lD~~l~r~~d~~Yyt~~~~G~~e~~~i~----- 310 (471)
T 3a32_A 259 PK------LD----FIMMV---EESGVSKEW-------QMG---TIQFDFNLPRRFRLYDVVREEFGIEEVYIIH----- 310 (471)
T ss_dssp CE------EE----EEEEE---ESSSCEEEE-------EEE---EEEEESSHHHHTTHHHHHHHHHCCSCEEEEE-----
T ss_pred Cc------cc----eEEec---cHHhhhhhh-------eee---eEEecccccccCCceEeccccCCceeeEEEe-----
Confidence 21 00 00000 00 222221 133 7999999999999 999 621 10000
Q ss_pred cccccCCcccCccceehhhHHHHHHHHHHHHhhhhcccc--chhhhhhhhcC------C-CccchHHHHHHHhhhcccee
Q 003041 721 LIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRA--TETQVLVGLLG------D-KLPLAAELVSELWNAKVKAE 791 (854)
Q Consensus 721 Li~~fg~~~~pAvGfsigieRL~~~L~~~~~~~~~~~~~--~~~dVlV~~~~------~-~~~~a~~la~~Lr~~GI~ae 791 (854)
-+...|+||++.++.+++.. .|++ +|++|+|++.+ + ....+.+++++||++||+|+
T Consensus 311 ------------~~i~GgieRli~~lie~~~g---~~p~~~ap~qv~Iip~~~~~~~~~~~~~~a~~i~~~Lr~~Gi~v~ 375 (471)
T 3a32_A 311 ------------RALLGSIERFLGVYLEHRRG---RMPFTLAPIQFAVIAVKTGGEVDREIEDLASSIAKGLLDKGFRVA 375 (471)
T ss_dssp ------------EEEEEEHHHHHHHHHHHTTT---CCCGGGCSCSEEEEEEECSSTTHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred ------------ccccCcHHHHHHHHHHHhCC---CCCCCcCCceEEEEEccCcccccHHHHHHHHHHHHHHHHCCCEEE
Confidence 01223899999776665332 3443 68899999987 3 46789999999999999999
Q ss_pred eee--hhhHHHHHhhhh-cCCCceEEEeecccccccceeeeccccch--hhhcchh-----hhHHHHHHhh
Q 003041 792 YMV--HKKVMKLIDRAR-ESKIPWMVIVGERELNEGIVKLKNIDTTQ--EEVISRS-----NFVEEIQRRL 852 (854)
Q Consensus 792 l~~--~~~l~k~l~~A~-~~gi~~iviIg~~e~~~g~V~Vk~l~~~~--e~~v~~~-----elv~~L~~~l 852 (854)
++. +.++++++++|+ ..|+||+|+||++|+++|+|+||++.+++ +..|+++ ++++.+++.+
T Consensus 376 ~D~~~~~~~g~k~~~a~~~~gip~~iiiG~~e~~~~~V~vr~r~~~~q~~~~v~~~~~~~~~~~~~~~~~~ 446 (471)
T 3a32_A 376 VKGSSKTGLSSDVRHIESTAKPAVNVFIGAKEVREKVLDVRVFDLESMKRRRLAIAYGDAADAVENLAAVA 446 (471)
T ss_dssp EEEEETTTHHHHHHHHHHTTCCSEEEEECHHHHHHTEEEEEEEETTTTEEEEEEEECSSHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHhcCCCEEEEECchhhhCCEEEEEECCCCccceEEEeecccchhHHHHHHHHHH
Confidence 998 468999999999 99999999999999999999999999988 5788888 8887776654
No 27
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=100.00 E-value=4.1e-39 Score=383.57 Aligned_cols=349 Identities=15% Similarity=0.220 Sum_probs=272.8
Q ss_pred CCCCCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC---chhhhhhhhccCCceeeecc
Q 003041 429 RLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYD 505 (854)
Q Consensus 429 ~~~~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~~G~~l~LRpD 505 (854)
+..+.++|++||+|.++.+++.|++.+++.|+++||++|.||+|++.++|.. +|++ .++||+ .|.+|+.++|||+
T Consensus 255 ~~~~~~~G~~~~lP~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~-sGh~~~~~~~my~-~d~~~~~~~LrP~ 332 (642)
T 1qf6_A 255 HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEK-TGHWDNYKDAMFT-TSSENREYCIKPM 332 (642)
T ss_dssp ECCTTSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHH-HSHHHHHGGGCEE-EEETTEEEEECSS
T ss_pred ccccCCCCcEEECCcHHHHHHHHHHHHHHHHHHcCCEEEECCcCccHHHHhh-cCcccccccccee-eecCCceEEecCC
Confidence 3456799999999999999999999999999999999999999999999976 7875 478999 8999999999999
Q ss_pred cccchhhhhhhc----cccchhhhhhhhhhcccCC--CCc--cccccccccccccccccccCCChh---hHHHHHHHhhh
Q 003041 506 LTVPFARYVAMN----GLTSFKRHQIAKVYRRDNP--SKG--RYREFYQCDFDIAGQYERMGPDFE---VVKILTELLNE 574 (854)
Q Consensus 506 lT~~~aR~~a~~----~~~p~K~y~ig~VfR~e~p--~~G--r~REf~Q~d~eiig~~~~~~aDaE---vI~l~~eil~~ 574 (854)
.|++++|.++.+ +.+|+|+||+|+|||+|.+ +.| |.|||+|+|+|+||.++. +++| ++.++.++++.
T Consensus 333 ~~~~~~~~~~~~~~syr~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~--~~~e~~~~i~~~~~i~~~ 410 (642)
T 1qf6_A 333 NCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQ--IRDEVNGCIRLVYDMYST 410 (642)
T ss_dssp SHHHHHHHHTTSCEEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGG--HHHHHHHHHHHHHHHHGG
T ss_pred CCHHHHHHHHhhhhhccccCeEEEEeccEEecCCCccccCCceeeeEEEccEEEEcCHHH--HHHHHHHHHHHHHHHHHH
Confidence 999999999864 4689999999999999987 678 999999999999997543 4566 68999999999
Q ss_pred cCCCcceeeechhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHH---HHHHHHhcCcceeecccccccccccCChH
Q 003041 575 LDIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQI---KKEMVEEKGLSVETADRIGTFVKERGSPL 651 (854)
Q Consensus 575 Lgl~~~~i~Lnh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i---~~~L~~~~gl~~~~~~~L~~l~~~~g~~~ 651 (854)
||+++|.+++|++. + ..+| +...|+.. ..++++..|++..... |.
T Consensus 411 lGl~~~~v~l~~~~--e---~~~g----------------~~e~w~~a~~~l~~~l~~~g~~~~~~~---------g~-- 458 (642)
T 1qf6_A 411 FGFEKIVVKLSTRP--E---KRIG----------------SDEMWDRAEADLAVALEENNIPFEYQL---------GE-- 458 (642)
T ss_dssp GTCCCCEEEEECCC--S---SCCS----------------CHHHHHHHHHHHHHHHHTTTCCCEEET---------TC--
T ss_pred cCCCceEEEEecCc--c---cccC----------------CHHHHHHHHHHHHHHHHHcCCCcEEcC---------CC--
Confidence 99988999999864 1 1111 11234332 2233344444322100 10
Q ss_pred HHHHHHhhhcchhhcccccccccchHHHHHHHhhhccccceeeeeccc--cccCcccccc---c---ccccCCccccccc
Q 003041 652 VLLSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSL--ARGLDYYTGV---G---SIAAGGRYDNLIG 723 (854)
Q Consensus 652 ~vl~~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~gv~~~I~~D~sl--~rgl~YYtG~---~---~Ia~GGRYD~Li~ 723 (854)
..|+ |. + +|+.+ ..|.+||+|. + +...|+|| +.
T Consensus 459 ----------~afy----------------------gp--k--~d~~~~d~~G~~~~~gti~~df~l~~r~~~~y---~~ 499 (642)
T 1qf6_A 459 ----------GAFY----------------------GP--K--IEFTLYDCLDRAWQCGTVQLDFSLPSRLSASY---VG 499 (642)
T ss_dssp ----------SCTT----------------------CC--E--EEEEEECTTCCEEEEEEEEEESSHHHHTTCCE---EC
T ss_pred ----------cccc----------------------cC--c--ccEEEEccCCceEEeeeEEEeccCCccCCCEE---Ee
Confidence 0122 11 1 23322 2356666661 1 22234455 23
Q ss_pred ccCCcccCccce-eh--hhHHHHHHHHHHHHhhhhccccchhhhhhhhcCC-CccchHHHHHHHhhhccceeeee-hhhH
Q 003041 724 MFGTKQVPAVGV-SL--GIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMV-HKKV 798 (854)
Q Consensus 724 ~fg~~~~pAvGf-si--gieRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~-~~~l 798 (854)
..|++..|++|+ ++ ++||++.+|.++..+..|.|. +|+||+|+++++ ...++.+++++||++||+|+++. +.++
T Consensus 500 ~~g~~~~P~~~hrai~G~ieR~i~~liE~~~~~~P~~l-aP~qv~vipi~~~~~~~a~~v~~~L~~~Gi~v~~D~~~~~~ 578 (642)
T 1qf6_A 500 EDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWL-APVQVVIMNITDSQSEYVNELTQKLSNAGIRVKADLRNEKI 578 (642)
T ss_dssp TTSCEECCEEEEEEEEEEHHHHHHHHHHHHTTCCCTTT-CSSCEEEEESSHHHHHHHHHHHHHHHTTTCCEEEECCSSCH
T ss_pred cCCCCcCcEEEEeccCCCHHHHHHHHHHHhcCCCCccc-CCceEEEEEeCHHHHHHHHHHHHHHHhCCCEEEEECCCCCH
Confidence 345567888876 55 899999999887654334454 589999999986 66789999999999999999998 4689
Q ss_pred HHHHhhhhcCCCceEEEeecccccccceeeeccccchhhhcchhhhHHHHHHhhc
Q 003041 799 MKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 853 (854)
Q Consensus 799 ~k~l~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~ 853 (854)
++++++|+..|+||+|+||++|+++|+|+||++.++++..|+++++++.|+++++
T Consensus 579 g~kir~a~~~g~p~~ivvG~~E~~~~~V~vr~r~~~~~~~v~~~e~~~~l~~~~~ 633 (642)
T 1qf6_A 579 GFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIR 633 (642)
T ss_dssp HHHHHHHHHTTCSEEEEECTTTGGGCCEEEEESSSCEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEECchhhhcCeEEEEECCCCceEEEEHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999987764
No 28
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=100.00 E-value=4e-38 Score=362.60 Aligned_cols=325 Identities=16% Similarity=0.118 Sum_probs=246.4
Q ss_pred CCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC---chhhhhhhhcc----CCceeeec
Q 003041 432 KLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQG----GELCSLRY 504 (854)
Q Consensus 432 ~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~~----G~~l~LRp 504 (854)
+.++|++||+|.++.++++|++.++++|+++||++|.||+|++.++|..++|+. .++||+|.|++ |+.++|||
T Consensus 31 ~~~~G~~d~lP~g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~~~l~~~l~LRP 110 (477)
T 1hc7_A 31 GPVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRP 110 (477)
T ss_dssp CSSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEEEECS
T ss_pred cCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEEEECCCCccCCCeEEEcC
Confidence 468999999999999999999999999999999999999999999997767764 58899999987 89999999
Q ss_pred ccccchhhhhhhc----cccchhhhhhhhhhcccCCCCc--cccccccccccccccccccCCChhhHH---HHHHHh-hh
Q 003041 505 DLTVPFARYVAMN----GLTSFKRHQIAKVYRRDNPSKG--RYREFYQCDFDIAGQYERMGPDFEVVK---ILTELL-NE 574 (854)
Q Consensus 505 DlT~~~aR~~a~~----~~~p~K~y~ig~VfR~e~p~~G--r~REf~Q~d~eiig~~~~~~aDaEvI~---l~~eil-~~ 574 (854)
+.|++++|.++++ +.+|+|+||+|+|||+|.+..| |.|||+|+|+|+|+... ..+|+|++. ++.+++ +.
T Consensus 111 ~~~~~i~~~~~~~~~s~r~LP~rl~qig~vfR~E~~~rGl~R~REF~q~d~~~~~~~~-~~ad~E~~~~l~~~~~i~~~~ 189 (477)
T 1hc7_A 111 TSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATR-EEAEEEVRRMLSIYARLAREY 189 (477)
T ss_dssp CSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESSH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhhhhccccCCeeeEeecCEEeCCCCCCCcceeEEEEEccEEEEeCCH-HHHHHHHHHHHHHHHHHHHHh
Confidence 9999999988753 4689999999999999965558 99999999999987632 246778665 489999 89
Q ss_pred cCCCcceeeechhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHHHHHHHhcCcceeecccccccccccCChHHHH
Q 003041 575 LDIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLL 654 (854)
Q Consensus 575 Lgl~~~~i~Lnh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~gl~~~~~~~L~~l~~~~g~~~~vl 654 (854)
||+. +.+.+|+.. + .+.|... . ..++ .++ . +
T Consensus 190 Lgl~-~~~~~~~~~--e---~~~g~~~----------------~----------------~~ie---~~~--~-d----- 220 (477)
T 1hc7_A 190 AAIP-VIEGLKTEK--E---KFAGAVY----------------T----------------TTIE---ALM--K-D----- 220 (477)
T ss_dssp HCCC-CEEEECCTT--T---SCTTSSE----------------E----------------EEEE---EEC--T-T-----
T ss_pred cCCe-EEEEeCChH--H---hcCCccc----------------c----------------eEEE---EEc--C-C-----
Confidence 9996 888777531 0 0001000 0 0011 100 0 0
Q ss_pred HHHhhhcchhhcccccccccchHHHHHHHhhhccccceeeeeccccccCccccc-ccccccCCcccccccccCC-cccCc
Q 003041 655 SKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG-VGSIAAGGRYDNLIGMFGT-KQVPA 732 (854)
Q Consensus 655 ~~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~gv~~~I~~D~sl~rgl~YYtG-~~~Ia~GGRYD~Li~~fg~-~~~pA 732 (854)
+. . +.+ .++ |+-| ..+.+.|+||++. .|+ +.+|.
T Consensus 221 ------gr----------~-------------~~~-gt~-----------~~lg~~~s~~~g~~y~~~---~G~~~~~~~ 256 (477)
T 1hc7_A 221 ------GK----------A-------------LQA-GTS-----------HYLGENFARAFDIKFQDR---DLQVKYVHT 256 (477)
T ss_dssp ------SC----------E-------------EEE-EEE-----------EEEETHHHHHTTCEEECT---TSCEEECEE
T ss_pred ------Cc----------E-------------EEE-eee-----------EEcccccccccCeEEECC---CCCEEeeeE
Confidence 00 0 000 011 1112 1256678888652 233 23567
Q ss_pred cceehhhHHHHHHHHHHHHhh-hhcccc--chhhhhhhhcCC------CccchHHHHHHHhhhccceeeeeh--hhHHHH
Q 003041 733 VGVSLGIERVFTIMEQIQKER-NQIIRA--TETQVLVGLLGD------KLPLAAELVSELWNAKVKAEYMVH--KKVMKL 801 (854)
Q Consensus 733 vGfsigieRL~~~L~~~~~~~-~~~~~~--~~~dVlV~~~~~------~~~~a~~la~~Lr~~GI~ael~~~--~~l~k~ 801 (854)
+||+++ ||++.+|.+++.+. ...|++ +|+||+|+++++ ....+.+|++.||++||+|+++.. .+++++
T Consensus 257 ~~~Gig-eRli~~lie~~~d~~gl~~P~~laP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~~s~g~k 335 (477)
T 1hc7_A 257 TSWGLS-WRFIGAIIMTHGDDRGLVLPPRLAPIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLDDRDQHTPGYK 335 (477)
T ss_dssp EEEEEE-THHHHHHHHHHCBTTBCCCCTTTCSCSEEEEECCCTTTHHHHHHHHHHHHHHHHHTTCCEEECCCSSSCHHHH
T ss_pred eeccHH-HHHHHHHHHHhCccccccCCcccCCceEEEEEcCCcchHHHHHHHHHHHHHHHHhCCEEEEEeCCCCCCHHHH
Confidence 889999 99999998765432 224554 689999999874 246789999999999999999874 579999
Q ss_pred HhhhhcCCCceEEEeecccccccceeeeccccchhhhcchhhhHHHHHHhh
Q 003041 802 IDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 852 (854)
Q Consensus 802 l~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l 852 (854)
+++|++.|+||+|+||++|+++|+|+||++. +++..|+++++++.|++.+
T Consensus 336 ~~~a~~~G~p~~iiiG~~el~~~~V~vr~r~-~eq~~v~~~el~~~l~~~l 385 (477)
T 1hc7_A 336 FHEWELKGVPFRVELGPKDLEGGQAVLASRL-GGKETLPLAALPEALPGKL 385 (477)
T ss_dssp HHHHHHTTCSEEEEECHHHHHTTEEEEEETT-SCCCEEEGGGHHHHHHHHH
T ss_pred HHHHhhcCCCEEEEECcchhcCCEEEEEEec-CceEEEeHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 9999999999999987765
No 29
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=100.00 E-value=8.8e-38 Score=358.63 Aligned_cols=325 Identities=16% Similarity=0.183 Sum_probs=252.5
Q ss_pred CCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC---chhhhhhhhcc----CCceeeec
Q 003041 432 KLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQG----GELCSLRY 504 (854)
Q Consensus 432 ~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~~----G~~l~LRp 504 (854)
..++|++||+|.++.++++|++.++++|+++||++|.||+|++.++|.+++|+. .++||.|.|++ |+.++|||
T Consensus 25 ~~~~G~~d~lP~g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~g~~~~~~~l~LRP 104 (459)
T 1nj8_A 25 YPIKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRP 104 (459)
T ss_dssp STTSSCCBBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEEEEECS
T ss_pred CCCCceEEECChHHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEEEeccCcccCCCeeEECC
Confidence 378999999999999999999999999999999999999999999997777864 58899999886 89999999
Q ss_pred ccccchhhhhhhc----cccchhhhhhhhhhcccCC-CCc--cccccc-cccccccccccccCCChh---hHHHHHHHhh
Q 003041 505 DLTVPFARYVAMN----GLTSFKRHQIAKVYRRDNP-SKG--RYREFY-QCDFDIAGQYERMGPDFE---VVKILTELLN 573 (854)
Q Consensus 505 DlT~~~aR~~a~~----~~~p~K~y~ig~VfR~e~p-~~G--r~REf~-Q~d~eiig~~~~~~aDaE---vI~l~~eil~ 573 (854)
+.|++++|+++.+ +.+|+|+||+|+|||+|++ +.| |.|||+ |+|+|+|+... ..+|+| ++.++.++++
T Consensus 105 ~~~~~i~~~~~~~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~~~~-~~a~~e~~~~i~~~~~~~~ 183 (459)
T 1nj8_A 105 TSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTK-EEAENQVKEAISIYKKFFD 183 (459)
T ss_dssp SSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSH-HHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHhhhhcccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEEECCH-HHHHHHHHHHHHHHHHHHH
Confidence 9999999999853 4679999999999999999 888 999999 99999987632 235666 8999999999
Q ss_pred hcCCCcceeeechhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHHHHHHHhcCcceeecccccccccccCChHHH
Q 003041 574 ELDIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVL 653 (854)
Q Consensus 574 ~Lgl~~~~i~Lnh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~gl~~~~~~~L~~l~~~~g~~~~v 653 (854)
.||+. +.+.+++.. +++. +-.. .. .+..++ .+
T Consensus 184 ~LGl~-~~~~~~~~~-------------ek~~-------------------------ga~~-~~-~ie~~~--~d----- 215 (459)
T 1nj8_A 184 TLGIP-YLISKRPEW-------------DKFP-------------------------GAEY-TM-AFDTIF--PD----- 215 (459)
T ss_dssp HHTCC-CEEEEECTT-------------SCCT-------------------------TCSE-EE-EEEEEC--TT-----
T ss_pred HCCCc-eEEeecCch-------------hhcC-------------------------Cccc-ce-eEEEEc--CC-----
Confidence 99995 777766320 0000 0000 00 000000 00
Q ss_pred HHHHhhhcchhhcccccccccchHHHHHHHhhhccccceeeeeccccccCccccc-ccccccCCcccccccccCC-cccC
Q 003041 654 LSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG-VGSIAAGGRYDNLIGMFGT-KQVP 731 (854)
Q Consensus 654 l~~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~gv~~~I~~D~sl~rgl~YYtG-~~~Ia~GGRYD~Li~~fg~-~~~p 731 (854)
|- .+++- ..++-| ..+.+.|+||++.- |+ +.+|
T Consensus 216 ----------------------------------g~--~~e~g------t~~~lg~~~s~~~~~~Y~~~~---G~~~~v~ 250 (459)
T 1nj8_A 216 ----------------------------------GR--TMQIA------TVHNLGQNFSKTFEIIFETPT---GDKDYAY 250 (459)
T ss_dssp ----------------------------------SC--EEEEE------EEEEEETHHHHHTTCEEECTT---SSEEECE
T ss_pred ----------------------------------Cc--EEEEE------EEeecccccccccCeEEECCC---CCEeeee
Confidence 00 00000 001111 11456788997621 33 2346
Q ss_pred ccceehhhHHHHHHHHHHHHhh-hhcccc--chhhhhhhhc-C-C----CccchHHHHHHHhhhccceeeee-hhhHHHH
Q 003041 732 AVGVSLGIERVFTIMEQIQKER-NQIIRA--TETQVLVGLL-G-D----KLPLAAELVSELWNAKVKAEYMV-HKKVMKL 801 (854)
Q Consensus 732 AvGfsigieRL~~~L~~~~~~~-~~~~~~--~~~dVlV~~~-~-~----~~~~a~~la~~Lr~~GI~ael~~-~~~l~k~ 801 (854)
.+||+++ ||++.+|.+++.+. ...|++ +|++|+|+++ + + ....+.+|+++||++ |+|+++. +.+++++
T Consensus 251 ~~~~Gig-eRli~alie~~~d~~gl~~P~~laP~qv~Iipi~~~~~~~~~~~~a~~l~~~Lr~~-i~v~~D~~~~~~g~k 328 (459)
T 1nj8_A 251 QTCYGIS-DRVIASIIAIHGDEKGLILPPIVAPIQVVIVPLIFKGKEDIVMEKAKEIYEKLKGK-FRVHIDDRDIRPGRK 328 (459)
T ss_dssp EEEEEEC-THHHHHHHHHHCBTTBCCCCTTSCSSSEEEEECCCSSCHHHHHHHHHHHHHHHHTT-SCEEECCSCSCHHHH
T ss_pred EeeccHH-HHHHHHHHHHhCCCceeEcCCcCCCCcEEEEecccCCcHHHHHHHHHHHHHHHhhh-cEEEEECCCCCHHHH
Confidence 8889999 99999997765432 223554 6899999998 5 2 356789999999999 9999987 4689999
Q ss_pred HhhhhcCCCceEEEeecccccccceeeeccccchhhhcchhhhHHHHHHhh
Q 003041 802 IDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 852 (854)
Q Consensus 802 l~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l 852 (854)
+++|++.|+||+|+||++|+++|+|+||++.++++..|+++++++.|++.+
T Consensus 329 ~~~a~~~G~p~~iiiG~~el~~~~V~vr~r~t~eq~~v~~~el~~~l~~~l 379 (459)
T 1nj8_A 329 FNDWEIKGVPLRIEVGPKDIENKKITLFRRDTMEKFQVDETQLMEVVEKTL 379 (459)
T ss_dssp HHHHHHTTCSEEEEECHHHHHTTEEEEEETTTCCEEEEETTSHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEECcchhcCCEEEEEECCCCceEEEeHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987765
No 30
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=100.00 E-value=4.7e-37 Score=351.95 Aligned_cols=351 Identities=16% Similarity=0.201 Sum_probs=261.4
Q ss_pred CCCCccchhhHHhHHHHHHHhHHHHHHHH-HhcCccccCcchhHhHHhhhhccCCC---chhhhhhhhc--cCCceeeec
Q 003041 431 PKLPKGTRDFAKEQMAVREKAFSIITEVF-KRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQ--GGELCSLRY 504 (854)
Q Consensus 431 ~~~p~G~~D~lp~~~~~~~~i~~~l~~if-~~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~--~G~~l~LRp 504 (854)
.+.++|++||+|.++.+++.|++.+++.+ +++||++|.||+|++.++|.. +|++ .++||.|.|. +|+.++|||
T Consensus 50 ~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~-sGh~~~~~~emy~~~d~~~~~~~l~LrP 128 (460)
T 3uh0_A 50 DPLSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEK-SGHWENYADDMFKVETTDEEKEEYGLKP 128 (460)
T ss_dssp CTTSTTCCEECHHHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHHH-HTCTTTSGGGSCEECC------CEEECS
T ss_pred ccCCCCcEEECccHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHHh-cCCccccccceEEEecCCCCCceEEEcc
Confidence 34589999999999999999999999999 999999999999999999975 6775 4889999987 589999999
Q ss_pred ccccchhhhhhhc----cccchhhhhhhhhhcccCCC--Cc--cccccccccccccccccccCCChh---hHHHHHHHh-
Q 003041 505 DLTVPFARYVAMN----GLTSFKRHQIAKVYRRDNPS--KG--RYREFYQCDFDIAGQYERMGPDFE---VVKILTELL- 572 (854)
Q Consensus 505 DlT~~~aR~~a~~----~~~p~K~y~ig~VfR~e~p~--~G--r~REf~Q~d~eiig~~~~~~aDaE---vI~l~~eil- 572 (854)
+.|++++++++.. +.+|+|+||+|+|||+|.++ .| |.|||+|.|+++|+.++. +++| +|.++.+++
T Consensus 129 t~~~~~~~~~~~~~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~f~~~e~--~~~e~~~~i~~~~~~~~ 206 (460)
T 3uh0_A 129 MNCPGHCLIFGKKDRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHIFCTPSQ--VKSEIFNSLKLIDIVYN 206 (460)
T ss_dssp CSHHHHHHHHTTSCCBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGG--HHHHHHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHhccccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEEEcCHHH--HHHHHHHHHHHHHHHHH
Confidence 9999999998763 56799999999999999885 78 999999999999998643 4555 889999999
Q ss_pred hhcCCC--------cceeeechhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHH---HHHHHhcCcceeeccccc
Q 003041 573 NELDIG--------DYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIK---KEMVEEKGLSVETADRIG 641 (854)
Q Consensus 573 ~~Lgl~--------~~~i~Lnh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~---~~L~~~~gl~~~~~~~L~ 641 (854)
+.||+. ++.++++.+. -++.| +. ..|++.. .+.++..|++...-.
T Consensus 207 ~~lGl~~~~~~~~~~~~~~l~t~p-----e~~~G-~~---------------~~w~~ae~~L~~~l~~~g~~~~~~~--- 262 (460)
T 3uh0_A 207 KIFPFVKGGSGAESNYFINFSTRP-----DHFIG-DL---------------KVWNHAEQVLKEILEESGKPWKLNP--- 262 (460)
T ss_dssp TTSCCC-----CCSSCEEEEECCC-----SSCCS-CH---------------HHHHHHHHHHHHHHHHHTCCEEEET---
T ss_pred HHcCCCCcccccccceEEEEccCC-----cccCC-CH---------------HHHHHHHHHHHHHHHHhCCCeeECC---
Confidence 999998 7999998653 12223 11 2333222 223333444332211
Q ss_pred ccccccCChHHHHHHHhhhcchhhcccccccccchHHHHHHHhhhccc---cceeeeeccccccCcccccccccccCCcc
Q 003041 642 TFVKERGSPLVLLSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKC---IDKVVFDLSLARGLDYYTGVGSIAAGGRY 718 (854)
Q Consensus 642 ~l~~~~g~~~~vl~~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~gv---~~~I~~D~sl~rgl~YYtG~~~Ia~GGRY 718 (854)
|. ..|+........ .+..|. ..+|++|+.+.. ||
T Consensus 263 ------g~------------gafygpkid~~~----------~d~~gr~~q~~Tiqld~~~~~---------------rf 299 (460)
T 3uh0_A 263 ------GD------------GAFYGPKLDIMV----------TDHLRKTHQVATIQLDFQLPE---------------RF 299 (460)
T ss_dssp ------TC------------SCSSCCEEEEEE----------ECTTSCEEEEEEEEEESHHHH---------------HT
T ss_pred ------Cc------------cccccceEEEEE----------EccCCCeeeeccccccccccc---------------cc
Confidence 00 012211000000 111121 124555544432 33
Q ss_pred cccc-cccCCcccCcc----ceehhhHHHHHHHHHHHHhhhhccccchhhhhhhhcCCC----ccchHHHHHHHhhh---
Q 003041 719 DNLI-GMFGTKQVPAV----GVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDK----LPLAAELVSELWNA--- 786 (854)
Q Consensus 719 D~Li-~~fg~~~~pAv----GfsigieRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~~----~~~a~~la~~Lr~~--- 786 (854)
|-.. ..-|++..|++ +|+ ++||++.+|.+++....|.|. +|.||+|+++++. ..++.+++++|+++
T Consensus 300 ~l~y~~~~g~~~~P~~ih~~~~G-g~eRli~~Lie~~~g~~P~~l-aP~qv~Vipi~~~~~~~~~~a~~l~~~Lr~~~~~ 377 (460)
T 3uh0_A 300 DLKFKDQDNSYKRPIMIHRATFG-SIERFMALLIDSNEGRWPFWL-NPYQAVIIPVNTKNVQQLDMCTALQKKLRNELEA 377 (460)
T ss_dssp TCCEECTTSCEECCEEEEEEEEE-EHHHHHHHHHHHHTTCCCGGG-CSCCEEEEESSTTCHHHHHHHHHHHHHHHCCCCT
T ss_pred ceEEECCCCCccCcEEEecCcch-HHHHHHHHHHHHcCCCCCCCC-CCceEEEEEecCCcHHHHHHHHHHHHHHHcCccc
Confidence 3221 11244567777 477 899999999886543334443 6899999999863 46799999999998
Q ss_pred -----------ccceeeee-hhhHHHHHhhhhcCCCceEEEeecccccccceeeeccccch-hhhcchhhhHHHHHHhhc
Q 003041 787 -----------KVKAEYMV-HKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQ-EEVISRSNFVEEIQRRLN 853 (854)
Q Consensus 787 -----------GI~ael~~-~~~l~k~l~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~-e~~v~~~elv~~L~~~l~ 853 (854)
||+|+++. +.++++++++|++.|+||+|+||++|+++|+|+||++.+++ +..++++|++++|+++++
T Consensus 378 ~~~~~~~~~~~Gi~v~~D~~~~~lg~k~r~Ad~~g~p~~ivvG~~E~~~g~Vtvr~r~~~e~q~~v~~~el~~~l~~~~~ 457 (460)
T 3uh0_A 378 DDMEPVPLNDWHFNVDLDIRNEPVGYRIKSAILKNYSYLIIVGDEEVQLQKYNIRERDNRKSFEKLTMSQIWEKFIELEK 457 (460)
T ss_dssp TSSCCCCTTCCCCCEEECCCSSCHHHHHHHHHHHTCSEEEEECHHHHHHTCEEEEEGGGTTSCEEECHHHHHHHHHHHHH
T ss_pred ccccccccCCCCEEEEEECCCCCHHHHHHHHHHcCCCEEEEEcchhhhCCeEEEEECCCCceeEEeeHHHHHHHHHHHHH
Confidence 99999998 47899999999999999999999999999999999999999 999999999999998775
No 31
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=100.00 E-value=1.1e-35 Score=354.24 Aligned_cols=392 Identities=15% Similarity=0.170 Sum_probs=241.9
Q ss_pred CCccchhhHHhHHHHHHHhHHHHHHHHH-hcCccccCcchhHhHHhhhhccCCCc------------hhhhhhhhc----
Q 003041 433 LPKGTRDFAKEQMAVREKAFSIITEVFK-RHGAMALDTPVFEMRETLMGKYGEDS------------KLIYDLADQ---- 495 (854)
Q Consensus 433 ~p~G~~D~lp~~~~~~~~i~~~l~~if~-~~G~~eI~tP~le~~e~~~~~~g~~~------------k~~y~~~D~---- 495 (854)
.++|++||+|.++.++++|++.+++.|. ..||+||.||+|+|.++|.. +|++. +++|++ |+
T Consensus 89 g~~G~~d~lP~G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~~~lwk~-SGH~~~f~d~m~~~~~~~e~yr~-D~l~e~ 166 (693)
T 2zt5_A 89 GVSGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKT-SGHVDKFADFMVKDVKNGECFRA-DHLLKA 166 (693)
T ss_dssp CCTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEHHHHHH-HTHHHHCEEEEEEBSSSCCEEEH-HHHHHH
T ss_pred CCCCeEEECCChHHHHHHHHHHHHHHHHHhcCcEEEEeCCcccHHHHhh-cCCcccccccceeeccCCceeec-cHhHHH
Confidence 3599999999999999999999999998 56999999999999999964 66541 355554 32
Q ss_pred ---------------------------------------------------------------------cCCceeeeccc
Q 003041 496 ---------------------------------------------------------------------GGELCSLRYDL 506 (854)
Q Consensus 496 ---------------------------------------------------------------------~G~~l~LRpDl 506 (854)
+|+.+.|||+.
T Consensus 167 ~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~eel~~li~~~~~~~P~~g~~~~~~~~fnlmf~t~igp~~~~~~~LRPEt 246 (693)
T 2zt5_A 167 HLQKLMSDKKCSVEKKSEMESVLAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLMFKTFIGPGGNMPGYLRPET 246 (693)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHHHTTTTTCCHHHHHHHHHHTTCBCSSSCCBBCCCEEEECCCEEECSSSSSSEEEECSCS
T ss_pred HHHHhhccccccHHHHHHHHHHHhhccCCCHHHHHHHHHHcCCCCCCCCCCCCCcchhheeeeccccCCCCcceeecccc
Confidence 56889999999
Q ss_pred ccch----hhhhhh-ccccchhhhhhhhhhccc-CCCCc--cccccccccccccccccccC-------CChh--------
Q 003041 507 TVPF----ARYVAM-NGLTSFKRHQIAKVYRRD-NPSKG--RYREFYQCDFDIAGQYERMG-------PDFE-------- 563 (854)
Q Consensus 507 T~~~----aR~~a~-~~~~p~K~y~ig~VfR~e-~p~~G--r~REf~Q~d~eiig~~~~~~-------aDaE-------- 563 (854)
|.++ .|.+.. ++.+|+|+||||++||+| +|+.| |.|||+|+|+|+|+.++... .|+|
T Consensus 247 aqg~f~~f~r~~~~~~~~LP~~~aqiG~~fRnEisPr~GLlR~REF~q~d~e~F~~p~~~~~~~y~~v~da~~~~~~~~~ 326 (693)
T 2zt5_A 247 AQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEHFVDPSEKDHPKFQNVADLHLYLYSAKA 326 (693)
T ss_dssp HHHHHTTHHHHHHHTTTCSCEEEEEEEEEECCCSSCCSGGGSCSEEEEEEEEEEECTTCCCCTTGGGTTTCEEEEECHHH
T ss_pred chHHHHHHHHHHHHhCcCCCEEEEeecceecCCCCCCCCCccceeeEEccceEEeCcchhcchhHHHHHHHHHhhhhhhh
Confidence 9988 888876 478999999999999999 89999 99999999999999765432 3434
Q ss_pred ----------------------------hHHHHHHHhhhcCCCcceeeechhhhhhhhhhhcCCCccchh----------
Q 003041 564 ----------------------------VVKILTELLNELDIGDYEIKLNHRLLLDGMLEICGVPSEKFR---------- 605 (854)
Q Consensus 564 ----------------------------vI~l~~eil~~Lgl~~~~i~Lnh~~ll~~il~~~gi~~~~~~---------- 605 (854)
+|.++.+++..||+++..+++... ..+. .+....+.+.
T Consensus 327 ~~~~~~~~~~~~~ea~~~g~i~~e~~~~~i~~~~~f~~~lGi~~~~~~~~~~-~~~e---~a~ya~~~~d~e~~~~~g~~ 402 (693)
T 2zt5_A 327 QVSGQSARKMRLGDAVEQGVINNTVLGYFIGRIYLYLTKVGISPDKLRFRQH-MENE---MAHYACDCWDAESKTSYGWI 402 (693)
T ss_dssp HHTTCCCEEEEHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTCCGGGEEEEEC-CGGG---SCTTCSSEEEEEEEETTEEE
T ss_pred hccccccccchhhhhhhhcccchHHHHHHHHHHHHHHHHcCcCccEEEEecc-Cchh---hccchhhhhhehhhccCChH
Confidence 778899999999997655555321 0011 1111111110
Q ss_pred hhccchhhhhhhhHHHHHHHHHHhcCcc------e-eecccccccccccCChHHHHHHHhhhcchhhcccccccccchHH
Q 003041 606 TICSSIDKLDKQSFEQIKKEMVEEKGLS------V-ETADRIGTFVKERGSPLVLLSKLRQEGSLFLENSSAKLALDDLE 678 (854)
Q Consensus 606 ~v~~~l~kl~k~~~~~i~~~L~~~~gl~------~-~~~~~L~~l~~~~g~~~~vl~~l~~~~~~~~~~~~~~~al~~L~ 678 (854)
.+-..-++.+ ......... ...++. . ..++.... ..+.. .+-.++...+..+. +.......+++.
T Consensus 403 e~~~~a~r~~-~dL~~~~~~--s~~~l~~~~~~~~p~~~~~~~~---~~~~~-~~g~~i~~~Ap~i~-d~L~~~~~~~~~ 474 (693)
T 2zt5_A 403 EIVGCADRSC-YDLSCHARA--TKVPLVAEKPLKEPKTVNVVQF---EPSKG-AIGKAYKKDAKLVM-EYLAICDECYIT 474 (693)
T ss_dssp EEEEEECCCS-HHHHHHHHH--HTCCCCEEEC------------------------------------------------
T ss_pred HHHHHHHHHH-HHHHHHHHH--hccchhhhcccCcccceeeeee---cCChH-HHHHHHHhcccHHH-HHhhhhhHHHHH
Confidence 0000001110 011111100 001111 0 00000000 00000 00000100000000 000112334555
Q ss_pred HHHHHhhhccccceeeee---ccccc---cCcccccccccccCCcccccccccCCcccCcc-ceehhhHHHHHHHHHHHH
Q 003041 679 ILFQALEKSKCIDKVVFD---LSLAR---GLDYYTGVGSIAAGGRYDNLIGMFGTKQVPAV-GVSLGIERVFTIMEQIQK 751 (854)
Q Consensus 679 ~l~~~l~~~gv~~~I~~D---~sl~r---gl~YYtG~~~Ia~GGRYD~Li~~fg~~~~pAv-GfsigieRL~~~L~~~~~ 751 (854)
.+..+|+.+|. ..|.+| +.+.. +.++|.. -..|||| .|+| |+|+|++|++.+|.+++.
T Consensus 475 ~l~~~L~~~g~-i~i~vdGt~Fei~~~~~~~~~y~~---~~~Ggry-----------~P~Vi~~s~GigRli~aLie~~~ 539 (693)
T 2zt5_A 475 EMEMLLNEKGE-FTIETEGKTFQLTKDMINVKRFQK---TLYVEEV-----------VPNVIEPSFGLGRIMYTVFEHTF 539 (693)
T ss_dssp -----------------------------------------CCEEE-----------CCEEEEEEEEHHHHHHHHHHHHE
T ss_pred HHHHHHHhcCC-EEEEECCEEEEecccccceeeEEe---ccCCcEe-----------cCcceeCeehHHHHHHHHHHHhc
Confidence 66667777762 245555 33322 1232322 1246666 6877 999999999999987633
Q ss_pred h-----h---hhcccc--chhhhhhhhcCC---CccchHHHHHHHhhhccceeeee-hhhHHHHHhhhhcCCCceEEEee
Q 003041 752 E-----R---NQIIRA--TETQVLVGLLGD---KLPLAAELVSELWNAKVKAEYMV-HKKVMKLIDRARESKIPWMVIVG 817 (854)
Q Consensus 752 ~-----~---~~~~~~--~~~dVlV~~~~~---~~~~a~~la~~Lr~~GI~ael~~-~~~l~k~l~~A~~~gi~~iviIg 817 (854)
. . ...|++ +|++|+|+++++ ....+.++++.||++||+|++++ +.++++++++|++.|+||+|+||
T Consensus 540 ~~~~~~~~r~g~~~P~~lAP~qV~Vipl~~~~~~~~~A~~l~~~Lr~~Gi~v~~D~~~~sigkk~k~Ad~~G~p~~IiIG 619 (693)
T 2zt5_A 540 HVREGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDSSGSIGRRYARTDEIGVAFGVTID 619 (693)
T ss_dssp EECSSTTCCEEECCCTTTSSCSEEEEESCCSTTTHHHHHHHHHHHHHTTCCEEECCCCSCHHHHHHHHHHTTCCEEEEEC
T ss_pred cccccccccccccCCCCCCCCeEEEEEecCcHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEEc
Confidence 2 1 223554 679999999885 45789999999999999999987 46899999999999999999999
Q ss_pred cccc--cccceeeeccccchhhhcchhhhHHHHHHhhc
Q 003041 818 EREL--NEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 853 (854)
Q Consensus 818 ~~e~--~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~ 853 (854)
++|+ ++|+|+||++.++++..|++++++++|++.+.
T Consensus 620 ~~El~~~~g~Vtvr~r~t~eq~~v~l~el~~~l~~~l~ 657 (693)
T 2zt5_A 620 FDTVNKTPHTATLRDRDSMRQIRAEISELPSIVQDLAN 657 (693)
T ss_dssp HHHHTSSSCEEEEEETTTCCEEEEETTTHHHHHHHHHT
T ss_pred chhhhccCCEEEEEECCCCceEEEeHHHHHHHHHHHHh
Confidence 9999 99999999999999999999999999987664
No 32
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=100.00 E-value=2.6e-36 Score=349.50 Aligned_cols=325 Identities=16% Similarity=0.170 Sum_probs=249.0
Q ss_pred CCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC---chhhhhhhhcc----CCceeeec
Q 003041 432 KLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQG----GELCSLRY 504 (854)
Q Consensus 432 ~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~~----G~~l~LRp 504 (854)
+.++|++||+|.++.+++.|++.++++|++ ||++|.||+|++.++|.+++|+. .++||+|.|.+ |+.++|||
T Consensus 58 ~~~~G~~~~~P~g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~~~~~~~l~LrP 136 (501)
T 1nj1_A 58 YPVKGMHVWMPHGFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRP 136 (501)
T ss_dssp CSSTTCCEECHHHHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEEEECS
T ss_pred CCCCceEEECccHHHHHHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCCcccCCeeEEcc
Confidence 467999999999999999999999999999 99999999999999997767753 47899998875 78999999
Q ss_pred ccccchhhhhhhc----cccchhhhhhhhhhcccCC-CCc--cccccc-cccccccccccccCCChh---hHHHHHHHhh
Q 003041 505 DLTVPFARYVAMN----GLTSFKRHQIAKVYRRDNP-SKG--RYREFY-QCDFDIAGQYERMGPDFE---VVKILTELLN 573 (854)
Q Consensus 505 DlT~~~aR~~a~~----~~~p~K~y~ig~VfR~e~p-~~G--r~REf~-Q~d~eiig~~~~~~aDaE---vI~l~~eil~ 573 (854)
+.|++++|+++.+ +.+|+|+||+|+|||+|.+ ..| |.|||+ |+|+++++... ..+|+| ++.++.++++
T Consensus 137 t~e~~i~~~~~~~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~~-e~a~~e~~~~l~~~~~i~~ 215 (501)
T 1nj1_A 137 TSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATA-SEAEEQVERAVEIYKEFFN 215 (501)
T ss_dssp SSHHHHHHHHHHHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSH-HHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhhcccccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECCH-HHHHHHHHHHHHHHHHHHH
Confidence 9999999999864 3679999999999999998 788 999999 99999876532 234666 5899999999
Q ss_pred hcCCCcceeeechhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHHHHHHHhcCcceeecccccccccccCChHHH
Q 003041 574 ELDIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVL 653 (854)
Q Consensus 574 ~Lgl~~~~i~Lnh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~gl~~~~~~~L~~l~~~~g~~~~v 653 (854)
.||+. |.+.++... + .+. +-+ ... .+..++. .|.
T Consensus 216 ~Lgl~-~~~~~~~~~--e-----~~~-------------------------------~a~-~~~-die~~l~-~g~---- 249 (501)
T 1nj1_A 216 SLGIP-YLITRRPPW--D-----KFP-------------------------------GSE-YTV-AFDTLMP-DGK---- 249 (501)
T ss_dssp HHTCC-CEEEECCTT--T-----SCT-------------------------------TCS-EEE-EEEEECT-TSC----
T ss_pred HCCCe-EEEEeCCch--h-----hcC-------------------------------Ccc-cce-EEEEEcC-CCC----
Confidence 99995 777665321 0 000 000 000 0000000 000
Q ss_pred HHHHhhhcchhhcccccccccchHHHHHHHhhhcccccee-eeeccccccCcccccccccccCCcccccccccCCc-ccC
Q 003041 654 LSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKV-VFDLSLARGLDYYTGVGSIAAGGRYDNLIGMFGTK-QVP 731 (854)
Q Consensus 654 l~~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~gv~~~I-~~D~sl~rgl~YYtG~~~Ia~GGRYD~Li~~fg~~-~~p 731 (854)
.+.+ .++ .++. ..+...|+||++- . |+. ..+
T Consensus 250 --------------------------------~~ei-~t~~~lg~-----------~~a~~~~~ry~~~--~-g~~~~~h 282 (501)
T 1nj1_A 250 --------------------------------TLQI-GTVHNLGQ-----------TFARTFEIKFETP--E-GDHEYVH 282 (501)
T ss_dssp --------------------------------EEEE-EEEEEEET-----------HHHHHHTCEEECT--T-SCEEECE
T ss_pred --------------------------------EEEE-EEEEeccc-----------cchhhcCeEEECC--C-CCEEeee
Confidence 0000 011 0111 1134568899762 2 432 245
Q ss_pred ccceehhhHHHHHHHHHHHHh-hhhcccc--chhhhhhhhc-C-C----CccchHHHHHHHhhhccceeeee-hhhHHHH
Q 003041 732 AVGVSLGIERVFTIMEQIQKE-RNQIIRA--TETQVLVGLL-G-D----KLPLAAELVSELWNAKVKAEYMV-HKKVMKL 801 (854)
Q Consensus 732 AvGfsigieRL~~~L~~~~~~-~~~~~~~--~~~dVlV~~~-~-~----~~~~a~~la~~Lr~~GI~ael~~-~~~l~k~ 801 (854)
.+||+++ +|++.+|.+++.+ .+..|++ +|++|+|+++ + + ....+.+|+++||++||+|+++. +.+++++
T Consensus 283 ~~g~Gig-eRli~aliE~~~d~~Gl~~P~~laP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~s~g~k 361 (501)
T 1nj1_A 283 QTCYGLS-DRVIASVIAIHGDESGLCLPPDVAAHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGRK 361 (501)
T ss_dssp EEEEEEC-THHHHHHHHHTCCSSSEECCTTTSSCSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTCCEEECCCSSCHHHH
T ss_pred eccccHH-HHHHHHHHHHcCcccCccCCccccCceEEEEEeccCCchHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHHH
Confidence 7899999 9999999875432 1223554 6889999998 5 3 35678999999999999999998 4689999
Q ss_pred HhhhhcCCCceEEEeecccccccceeeeccccchhhhcchhhhHHHHHHhh
Q 003041 802 IDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 852 (854)
Q Consensus 802 l~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l 852 (854)
+++|++.|+||+|+||++|+++|+|+||++.++++..|+++++++.|++.+
T Consensus 362 ~~~a~~~G~p~~iiiG~~e~~~~~V~vr~r~t~eq~~v~~~el~~~l~~~l 412 (501)
T 1nj1_A 362 YYEWEMRGVPLRVEIGPRDLEKGAAVISRRDTGEKVTADLQGIEETLRELM 412 (501)
T ss_dssp HHHHHHEECSEEEEECHHHHTTTEEEEEESSSCCEEEEETTTHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEECcchhhCCEEEEEECCCCceEEEeHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987765
No 33
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=99.97 E-value=4.9e-33 Score=322.39 Aligned_cols=350 Identities=17% Similarity=0.125 Sum_probs=243.7
Q ss_pred CCccchhhHHhHHHHHHHhHHHHHHHHH--hcCccccCcchhHhHHhhhhccCCC---chhhhh----------------
Q 003041 433 LPKGTRDFAKEQMAVREKAFSIITEVFK--RHGAMALDTPVFEMRETLMGKYGED---SKLIYD---------------- 491 (854)
Q Consensus 433 ~p~G~~D~lp~~~~~~~~i~~~l~~if~--~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~---------------- 491 (854)
.++|++||+|.++.++++|++.+++.|. ++||+||.||+|++.++|.. +|++ .+.||+
T Consensus 27 ~~~G~~d~~P~G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~~l~~~-SGh~~~f~d~m~~~~~~~~~~r~d~l~~~ 105 (505)
T 1ati_A 27 GLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHY-SGHEATFADPMVDNRITKKRYRLDHLLKE 105 (505)
T ss_dssp CCTTCEEECHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETTHHHH-TSHHHHCEEEEEEC---------------
T ss_pred CCCCcceeCccHHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCHHHHHh-cCChhhcCccceeccccccccchhhhhhh
Confidence 4589999999999999999999999999 99999999999999999965 5654 233433
Q ss_pred ---------------------h------h-----------------hcc-------------------------CCceee
Q 003041 492 ---------------------L------A-----------------DQG-------------------------GELCSL 502 (854)
Q Consensus 492 ---------------------~------~-----------------D~~-------------------------G~~l~L 502 (854)
| . |.+ ++.+.|
T Consensus 106 ~~~~~~~~~~~~~~~~~e~~~~~~~~~i~~p~~~~~~m~~~~~~cp~~~~~~~~~~~~~fnlmf~t~~gpt~ee~~~~~L 185 (505)
T 1ati_A 106 QPEEVLKRLYRAMEVEEENLHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWTPPRYFNMMFQDLRGPRGGRGLLAYL 185 (505)
T ss_dssp -----------------------------------------------------CCCCEEEECBEEEECSSCCCGGGEEEE
T ss_pred hhhhhccccccccccHHHHHHHHHhhccccccccccccccccccCCccCccccccccchhhhhhhcccCCccccccceee
Confidence 2 1 112 457899
Q ss_pred ecccccch----hhhhhhc-cccchhhhhhhhhhccc-CCCCc--cccccccccccccccccccC-CChhhHHHHHHHhh
Q 003041 503 RYDLTVPF----ARYVAMN-GLTSFKRHQIAKVYRRD-NPSKG--RYREFYQCDFDIAGQYERMG-PDFEVVKILTELLN 573 (854)
Q Consensus 503 RpDlT~~~----aR~~a~~-~~~p~K~y~ig~VfR~e-~p~~G--r~REf~Q~d~eiig~~~~~~-aDaEvI~l~~eil~ 573 (854)
||+.|.++ +|.+.++ +.+|+|+|++|++||+| +|+.| |.|||+|.|+|+|+.++... .+++++.++.++++
T Consensus 186 RPE~t~~i~~~~~~~~~sy~r~LP~rl~qig~~FR~E~~pr~GL~R~REF~q~d~~~f~~~e~~~~~~~~~i~~~~~i~~ 265 (505)
T 1ati_A 186 RPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFVRPGEDEYWHRYWVEERLKWWQ 265 (505)
T ss_dssp CSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCSSCCTGGGSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHhcCCCCCEEEEEeeceeeCCCCCCCCCCcccceEEeeEEEEECHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 7888887 88999999999999999 89988 99999999999999865431 25689999999999
Q ss_pred hcCCCcceeeechhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHHHHHHHhcCcceeecccccccccccCChHHH
Q 003041 574 ELDIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVL 653 (854)
Q Consensus 574 ~Lgl~~~~i~Lnh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~gl~~~~~~~L~~l~~~~g~~~~v 653 (854)
.||+..+.+.+... ...-+. ......+. .+++. +..| .....+. .+++. +
T Consensus 266 ~LGl~~~~v~~~~~--~~~~~~--~~~~~~~d--~E~~~---p~~~---------------~e~~g~~----~~~d~-~- 315 (505)
T 1ati_A 266 EMGLSRENLVPYQQ--PPESSA--HYAKATVD--ILYRF---PHGS---------------LELEGIA----QRTDF-D- 315 (505)
T ss_dssp HTTCCGGGEEEEEC--CTTTSC--TTCSEEEE--EEEEE---TTEE---------------EEEEEEE----ECTTH-H-
T ss_pred HcCCCeEEEEECCC--ChHhhh--cccHHHHh--HHhhc---CCCC---------------ccchhhh----cccce-e-
Confidence 99997655443321 111000 01111110 00110 0000 0000010 12221 1
Q ss_pred HHHHhhhcchhhcccccccccchHHHHHHHhhhccccceeeeecccccc--CcccccccccccCCcccccccccCCcccC
Q 003041 654 LSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARG--LDYYTGVGSIAAGGRYDNLIGMFGTKQVP 731 (854)
Q Consensus 654 l~~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~gv~~~I~~D~sl~rg--l~YYtG~~~Ia~GGRYD~Li~~fg~~~~p 731 (854)
+... . ... ...+. .+++|+...++ +.|..+ .+|+|| .|
T Consensus 316 ---L~~~---~-~~~----------------~~~~~--~~~~~~n~~~~~~~~y~d~----~g~~~y-----------~p 355 (505)
T 1ati_A 316 ---LGSH---T-KDQ----------------EALGI--TARVLRNEHSTQRLAYRDP----ETGKWF-----------VP 355 (505)
T ss_dssp ---HHHH---C-SST----------------TTTTC--CSCCCCCSCCCSCCCEECS----SSCCEE-----------CC
T ss_pred ---cchh---h-ccc----------------cccce--eeeecccccceeEEEEEcC----CCCeee-----------cc
Confidence 1100 0 000 00000 11222222222 222211 134566 44
Q ss_pred -ccceehhhHHHHHHHHHHHH----------hhhhcccc--chhhhhhhhcCC----CccchHHHHHHHhhhc-cceeee
Q 003041 732 -AVGVSLGIERVFTIMEQIQK----------ERNQIIRA--TETQVLVGLLGD----KLPLAAELVSELWNAK-VKAEYM 793 (854)
Q Consensus 732 -AvGfsigieRL~~~L~~~~~----------~~~~~~~~--~~~dVlV~~~~~----~~~~a~~la~~Lr~~G-I~ael~ 793 (854)
++|+++|+||++.++.+++. .....|++ +|++|+|+++++ ....+.++++.||++| |+|+++
T Consensus 356 ~vig~s~GieRli~alle~~~~~~~~~~gd~~~gl~~p~~laP~~v~Vip~~~~~~~~~~~a~~l~~~Lr~~G~i~v~~D 435 (505)
T 1ati_A 356 YVIEPSAGVDRGVLALLAEAFTREELPNGEERIVLKLKPQLAPIKVAVIPLVKNRPEITEYAKRLKARLLALGLGRVLYE 435 (505)
T ss_dssp EEEEEEEEHHHHHHHHHHHHEEEEECTTSCEEEEECCCGGGCSCSEEEEESCSSCHHHHHHHHHHHHHHHTTCSSCEEEC
T ss_pred eEEEEeeEHHHHHHHHHHHHhhhcccccccccccccCCcccCCceEEEEEcCCccHHHHHHHHHHHHHHhccCCEEEEEC
Confidence 89999999999999887641 11112432 578999999874 3567899999999999 999988
Q ss_pred ehhhHHHHHhhhhcCCCceEEEeeccccc---------ccceeeeccccchhhhcchhhhHHHHHHhhc
Q 003041 794 VHKKVMKLIDRARESKIPWMVIVGERELN---------EGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 853 (854)
Q Consensus 794 ~~~~l~k~l~~A~~~gi~~iviIg~~e~~---------~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~ 853 (854)
...++++++++|++.|+||+|+||++|++ +|+|+||++.++++..|+++|++++|++.++
T Consensus 436 ~~~sig~k~~~ad~~g~p~~iivG~~el~~~~~~~~~~~g~V~vr~r~t~~q~~v~~~el~~~l~~~l~ 504 (505)
T 1ati_A 436 DTGNIGKAYRRHDEVGTPFAVTVDYDTIGQSKDGTTRLKDTVTVRDRDTMEQIRLHVDELEGFLRERLR 504 (505)
T ss_dssp CCSCHHHHHHHHHHTTCSEEEEECHHHHTCCTTSCCTTTTEEEEEETTTCCEEEEEHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHCCCCEEEEEChHHhhhccccccccCCEEEEEECCCCceEEEEHHHHHHHHHHHhc
Confidence 76679999999999999999999999999 9999999999999999999999999988764
No 34
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=99.96 E-value=7.4e-31 Score=302.83 Aligned_cols=328 Identities=14% Similarity=0.119 Sum_probs=236.3
Q ss_pred CCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC---chhhhhhhhccCC----ceeeec
Q 003041 432 KLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGE----LCSLRY 504 (854)
Q Consensus 432 ~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~~G~----~l~LRp 504 (854)
..++|++||+|.++.+++.|++.+++.++++||++|.||+|++.++|.+.+|+. .++||.|.|.+++ .++|||
T Consensus 48 ~~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~emy~~~d~g~~~l~e~l~LrP 127 (519)
T 4hvc_A 48 HDISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRP 127 (519)
T ss_dssp CSSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCCSCGGGGGGCEEEEEETTEEEEEEEEECS
T ss_pred cCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHhcccCCcccccccceEEeccCCcccccceeeCC
Confidence 367999999999999999999999999999999999999999999998667775 4789999887654 699999
Q ss_pred ccccchhhhhhh----ccccchhhhhhhhhhccc-CCCCc--cccccccccccccc-cccccCCChh---hHHHHHHHhh
Q 003041 505 DLTVPFARYVAM----NGLTSFKRHQIAKVYRRD-NPSKG--RYREFYQCDFDIAG-QYERMGPDFE---VVKILTELLN 573 (854)
Q Consensus 505 DlT~~~aR~~a~----~~~~p~K~y~ig~VfR~e-~p~~G--r~REf~Q~d~eiig-~~~~~~aDaE---vI~l~~eil~ 573 (854)
+.|++++++++. ++.+|+|+|++|+|||+| +++.| |.|||+|.|.++|+ .++ .++.| ++.++.++++
T Consensus 128 tse~~i~~~~~~~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~~~e--~a~~E~~~~l~~~~~i~~ 205 (519)
T 4hvc_A 128 TSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATME--EAAEEVLQILDLYAQVYE 205 (519)
T ss_dssp SSHHHHHHHHHHHCSSGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEESSHH--HHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhhccccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEecCHH--HHHHHHHHHHHHHHHHHH
Confidence 999999998875 346899999999999999 77788 99999999999844 443 24555 4577888998
Q ss_pred hc-CCCcceeeechhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHHHHHHHhcCcceeecccccccccccCChHH
Q 003041 574 EL-DIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLV 652 (854)
Q Consensus 574 ~L-gl~~~~i~Lnh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~gl~~~~~~~L~~l~~~~g~~~~ 652 (854)
.| ++ ++.+...+.. + .+.|-+ ... .+..|..-.|.
T Consensus 206 ~ll~l-p~~~~~~t~~--e---~~~Ga~----------------------------------~t~-~iEa~~p~~gr--- 241 (519)
T 4hvc_A 206 ELLAI-PVVKGRKTEK--E---KFAGGD----------------------------------YTT-TIEAFISASGR--- 241 (519)
T ss_dssp TTSCC-CCEEEECCTT--T---SCTTSS----------------------------------EEE-EEEEEETTTTE---
T ss_pred HhcCC-cceeeecCCc--c---ccCCch----------------------------------hhe-eeeeeeccCCC---
Confidence 87 66 3433222110 0 000100 000 01111100000
Q ss_pred HHHHHhhhcchhhcccccccccchHHHHHHHhhhcccccee-eeeccccc--cCcccccccccccCCcccccccccCCcc
Q 003041 653 LLSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKV-VFDLSLAR--GLDYYTGVGSIAAGGRYDNLIGMFGTKQ 729 (854)
Q Consensus 653 vl~~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~gv~~~I-~~D~sl~r--gl~YYtG~~~Ia~GGRYD~Li~~fg~~~ 729 (854)
. +.+ .++ +++..+.+ ++.|-+-.. .|-+ ..
T Consensus 242 ----------~-----------------------~q~-gT~~~Lg~~~s~~~~i~y~d~~~---~g~~----------~~ 274 (519)
T 4hvc_A 242 ----------A-----------------------IQG-GTSHHLGQNFSKMFEIVFEDPKI---PGEK----------QF 274 (519)
T ss_dssp ----------E-----------------------EEE-EEEEEEETHHHHHHTCEEECTTS---TTCE----------EE
T ss_pred ----------E-----------------------Eee-cccccccchhhhhcCcEEecccc---CCCE----------EE
Confidence 0 000 111 23322222 122211000 0111 01
Q ss_pred cCccceehhhHHHHHHHHHHHHhh-hhcccc--chhhhhhhhcCC-----------CccchHHHHHHHhhhccceeeeeh
Q 003041 730 VPAVGVSLGIERVFTIMEQIQKER-NQIIRA--TETQVLVGLLGD-----------KLPLAAELVSELWNAKVKAEYMVH 795 (854)
Q Consensus 730 ~pAvGfsigieRL~~~L~~~~~~~-~~~~~~--~~~dVlV~~~~~-----------~~~~a~~la~~Lr~~GI~ael~~~ 795 (854)
++-.+|+++ +|++.+|.+++.+. ...|++ +|+||+|++++. ....+.+|++.|+++||+|+++..
T Consensus 275 vh~~~~Gi~-~R~l~aliE~~~d~~gl~~P~~laP~qV~Iipi~~~~~~~~~~~e~~~~~a~~l~~~L~~~Girv~~Ddr 353 (519)
T 4hvc_A 275 AYQNSWGLT-TRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLSVNIRVRADLR 353 (519)
T ss_dssp CEEEEEEEE-THHHHHHHHHHCBTTBCCCCTTTCSCSEEEEECCC---CCHHHHHHHHHHHHHHHHHHHHTTCCEEECCC
T ss_pred EEEccccHH-HHHHHHHHHHhCccccccccccCCCeEEEEEEecCcccccchhhHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 222356666 99999999875432 233443 689999999872 346788999999999999999984
Q ss_pred -h-hHHHHHhhhhcCCCceEEEeecccccccceeeeccccchhhhcchhhhHHHHHHhhc
Q 003041 796 -K-KVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 853 (854)
Q Consensus 796 -~-~l~k~l~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~ 853 (854)
. +++++|++|+..|+||+|+||++|+++|+|+||++.++++..|+++++++.|++.|.
T Consensus 354 ~~~s~G~K~~~ael~GiP~~ivIG~kele~g~V~vr~R~tgeq~~v~~~el~~~l~~ll~ 413 (519)
T 4hvc_A 354 DNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVRRDTGEKLTVAENEAETKLQAILE 413 (519)
T ss_dssp SSSCHHHHHHHHHHTTCSEEEEECHHHHHHTEEEEEETTTCCEEEEEGGGHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCCEEEEECchhhcCCeEEEEECCCCCccceeHHHHHHHHHHHHH
Confidence 3 799999999999999999999999999999999999999999999999999887653
No 35
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=99.95 E-value=2.5e-29 Score=289.39 Aligned_cols=316 Identities=15% Similarity=0.167 Sum_probs=228.7
Q ss_pred CCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC---chhhhhhhhcc----CCceeeec
Q 003041 432 KLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQG----GELCSLRY 504 (854)
Q Consensus 432 ~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~~----G~~l~LRp 504 (854)
++++|+++|+|.++.+++.|++.+++.|+++||++|.||+|++.++|...+|+. .++||.|.|.+ |+.++|||
T Consensus 42 ~~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g~~~~~~~l~LrP 121 (518)
T 3ial_A 42 YPVKGCVVFRPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGLQPLEERLALRP 121 (518)
T ss_dssp SSSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEETTEEEEEEEEECS
T ss_pred CCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCCCcccCcceeECC
Confidence 688999999999999999999999999999999999999999999997656654 47899999875 68999999
Q ss_pred ccccchhhhhhh----ccccchhhhhhhhhhccc-CCCCc--ccccccccccccccc-ccccCCChhh---HHHHHHHh-
Q 003041 505 DLTVPFARYVAM----NGLTSFKRHQIAKVYRRD-NPSKG--RYREFYQCDFDIAGQ-YERMGPDFEV---VKILTELL- 572 (854)
Q Consensus 505 DlT~~~aR~~a~----~~~~p~K~y~ig~VfR~e-~p~~G--r~REf~Q~d~eiig~-~~~~~aDaEv---I~l~~eil- 572 (854)
+.|++++++++. ++.+|+|+|++|+|||+| +|+.| |.|||+|.|.++|+. ++ .++.|+ +.++.+++
T Consensus 122 t~e~~i~~~~~~~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~e--~a~~e~~~~l~~~~~i~~ 199 (518)
T 3ial_A 122 TSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAE--DAVSQLSDYWKVIDTIFS 199 (518)
T ss_dssp SSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSHH--HHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHhhhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCHH--HHHHHHHHHHHHHHHHHH
Confidence 999999998875 357899999999999999 68888 999999999999964 33 245554 45678999
Q ss_pred hhcCCCcceeeechhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHHHHHHHhcCcceeecccccccccccCChHH
Q 003041 573 NELDIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLV 652 (854)
Q Consensus 573 ~~Lgl~~~~i~Lnh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~gl~~~~~~~L~~l~~~~g~~~~ 652 (854)
+.||+. +.+. .. + .|+.. .|-..+ . .+..++ .+.
T Consensus 200 ~~LGlp-~~~~--~~------------~-----------------~~e~~-------~gA~yt-~-~iE~~~--pdg--- 233 (518)
T 3ial_A 200 DELCFK-GQKL--RR------------V-----------------CWDRF-------PGADYS-E-VSDVVM--PCG--- 233 (518)
T ss_dssp TTTCCC-CEEE--EE------------C-----------------GGGCC-------TTCSEE-E-EEEEEC--TTS---
T ss_pred HhcCCc-EEee--ec------------C-----------------hhhcc-------CCCccc-e-EEEEEc--CCC---
Confidence 889984 4321 11 0 01000 000000 0 000000 000
Q ss_pred HHHHHhhhcchhhcccccccccchHHHHHHHhhhccccceee-eeccccccCc-ccccccccccCCcccccccccCCccc
Q 003041 653 LLSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVV-FDLSLARGLD-YYTGVGSIAAGGRYDNLIGMFGTKQV 730 (854)
Q Consensus 653 vl~~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~gv~~~I~-~D~sl~rgl~-YYtG~~~Ia~GGRYD~Li~~fg~~~~ 730 (854)
+.+.+ .+++ +|..+.+.++ -|.+. . |.+..
T Consensus 234 --------------------------------r~ie~-gt~~~Lg~~~s~rf~i~y~d~-----~----------g~~~~ 265 (518)
T 3ial_A 234 --------------------------------RVLQT-AGIHNLGQRFSSTFDILYANK-----A----------NESVH 265 (518)
T ss_dssp --------------------------------CEEEE-EEEEEEETHHHHHTTCCEECT-----T----------CCEEC
T ss_pred --------------------------------CEEEE-eceecccchhhhhcCcEEECC-----C----------CCEee
Confidence 00000 1222 3332222222 12221 0 11122
Q ss_pred Cccc-eehhhHHHHHHHHHHHHhh-hhcccc--chhhhhhhhcCC-----------CccchHHHHHHHhhh-ccceeeee
Q 003041 731 PAVG-VSLGIERVFTIMEQIQKER-NQIIRA--TETQVLVGLLGD-----------KLPLAAELVSELWNA-KVKAEYMV 794 (854)
Q Consensus 731 pAvG-fsigieRL~~~L~~~~~~~-~~~~~~--~~~dVlV~~~~~-----------~~~~a~~la~~Lr~~-GI~ael~~ 794 (854)
|..+ ++++ +|++.+|.+++.+. ...||+ +|+||.|++++. ....+.+|++.|+++ ||+|+++.
T Consensus 266 ~h~~~~G~~-~R~iaaliE~~~de~Gl~lP~~LAP~qV~IiPi~~~~~~~~~~~~~~~~~a~~l~~~L~~~~Girv~~Dd 344 (518)
T 3ial_A 266 PYLTCAGIS-TRVLACALSIHGDSGGLVLPPLIAPIHVVIIPIGCGKKNNQESDQQVLGKVNEIADTLKSKLGLRVSIDD 344 (518)
T ss_dssp CEEEEEEEE-THHHHHHHHHHCBTTBCCCCGGGCSCSEEEEEESCSCTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEECC
T ss_pred eEEeccchH-HHHHHHHHHHhCCCCccccCCccceEEEEEEEeecCccccccchHHHHHHHHHHHHHHHhccCeEEEEEC
Confidence 3222 2333 99999998876542 234554 689999999873 235688899999999 99999997
Q ss_pred h--hhHHHHHhhhhcCCCceEEEeecccccccceeeeccccch--hhhcchhhh
Q 003041 795 H--KKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQ--EEVISRSNF 844 (854)
Q Consensus 795 ~--~~l~k~l~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~--e~~v~~~el 844 (854)
. .++++++++++..|+|++|+||++|+++|+|+||++++++ +..|+++++
T Consensus 345 r~~~s~G~K~~~ael~GvP~~i~vG~ke~e~g~V~vr~Rd~~~~~k~~v~~~el 398 (518)
T 3ial_A 345 DFSKSMGDKLYYYELKGVPLRIEVGQRDLANGQCIVVPRDVGKDQKRVIPITEV 398 (518)
T ss_dssp CTTSCHHHHHHHHHHTTCSEEEEEEHHHHHTTEEEEEETTTCGGGCEEEEHHHH
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEECCCCccceeEeeHHHH
Confidence 4 6899999999999999999999999999999999999998 889999999
No 36
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=99.88 E-value=7.2e-25 Score=250.31 Aligned_cols=328 Identities=15% Similarity=0.090 Sum_probs=212.1
Q ss_pred cch-hhHHhHHHHHHHhHHHHHHH-H-HhcCccccCcchhHhHHhhhhc-cCC---C---c----------hhhhhhh-h
Q 003041 436 GTR-DFAKEQMAVREKAFSIITEV-F-KRHGAMALDTPVFEMRETLMGK-YGE---D---S----------KLIYDLA-D 494 (854)
Q Consensus 436 G~~-D~lp~~~~~~~~i~~~l~~i-f-~~~G~~eI~tP~le~~e~~~~~-~g~---~---~----------k~~y~~~-D 494 (854)
|+. ||+|.++.+++.|++.+++. | .+.||++|.||++.|.++|... .|+ . . ++|+.++ +
T Consensus 52 G~~~~~~P~G~~l~~~i~~~~~~~~~~~~~g~~ev~tp~l~~~~~~~~s~~g~~~r~d~~~e~~~~~g~~~eem~~~~~~ 131 (454)
T 1g5h_A 52 GCHARFGPLGVELRKNLASQWWSSMVVFREQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQLVAFLEN 131 (454)
T ss_dssp CCSCCBCHHHHHHHHHHHHHHHHHHTTTCTTEEECCCCSEECCCCSSCCCCCEEECHHHHHHHHCC---CHHHHHHHHHH
T ss_pred cceeeeCchHHHHHHHHHHHHHHHHhhhcCCeEEEEcCccCChhhccccccCcccHHHHHHHHhhccCCCHHHHHHHHHh
Confidence 666 99999999999999999887 4 5899999999999998876431 133 1 1 2255443 2
Q ss_pred ccCCceeeecccccchhhhhhh----c-cccchhhhhhhhhhc---cc-CCCCc--cccccccccccccccccccCCCh-
Q 003041 495 QGGELCSLRYDLTVPFARYVAM----N-GLTSFKRHQIAKVYR---RD-NPSKG--RYREFYQCDFDIAGQYERMGPDF- 562 (854)
Q Consensus 495 ~~G~~l~LRpDlT~~~aR~~a~----~-~~~p~K~y~ig~VfR---~e-~p~~G--r~REf~Q~d~eiig~~~~~~aDa- 562 (854)
..++.+.|||+.+..+...+.+ + +.+|++++++|++|| +| .|..| |.|||+|.+.++|+.++....+.
T Consensus 132 ~~~~~~~LRPeta~g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s~~~Gl~R~REF~q~E~~~F~~pe~~~e~~~ 211 (454)
T 1g5h_A 132 LLKTSGKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVWFTPTRTSSQWLD 211 (454)
T ss_dssp HHHHSCEECSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEEEEECHHHHHHHHH
T ss_pred hcCcceeecccccHHHHHHHhhhHhhcccCCCEEEEEeeeeccCCcccccCCCCccccCceehhheEEEeCHhhHHHHHH
Confidence 2346789999888777655443 3 478999999999999 57 45444 99999999999998765322122
Q ss_pred hhHHHHHHHhhhcCCCcceeeechhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHHHHHHHhcCcceeecccccc
Q 003041 563 EVVKILTELLNELDIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGT 642 (854)
Q Consensus 563 EvI~l~~eil~~Lgl~~~~i~Lnh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~gl~~~~~~~L~~ 642 (854)
.++..+.++++.||+....++... +. +++ +... .++. ..
T Consensus 212 ~~~~~~~~~~~~lgi~~~~~r~~~----------~~--~~~------a~~~----------------~~ie-------~~ 250 (454)
T 1g5h_A 212 FWLRHRLLWWRKFAMSPSNFSSAD----------CQ--DEL------GRKG----------------SKLY-------YS 250 (454)
T ss_dssp HHHHHHHHHHHTTCSSGGGEEEEE----------EE--CTT------SCEE----------------EEEE-------EE
T ss_pred HHHHHHHHHHHHcCCCceeEEecC----------CH--HHH------HhcC----------------CCcE-------Ee
Confidence 346778888888998654444221 00 000 0000 0000 00
Q ss_pred cccccCChHHHHHHHhhhcchhhcccccccccchHHHHHHHhhhccccceeeeeccccccCcccccccccccCCcccccc
Q 003041 643 FVKERGSPLVLLSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTGVGSIAAGGRYDNLI 722 (854)
Q Consensus 643 l~~~~g~~~~vl~~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~gv~~~I~~D~sl~rgl~YYtG~~~Ia~GGRYD~Li 722 (854)
++ .|.- .+..- ....-.+|.+. ... .+ || +.|.++
T Consensus 251 ~p--~g~~------------e~~g~--~~~td~~l~~~----~~~---s~--~~------l~y~d~-------------- 285 (454)
T 1g5h_A 251 FP--WGKE------------PIETL--WNLGDQELLHT----YPG---NV--ST------IQGRDG-------------- 285 (454)
T ss_dssp ET--TEEE------------EEEEE--EEEESHHHHHH----STT---CG--GG------SCEEET--------------
T ss_pred cC--CCce------------EEEEe--cCCCHHHHHhc----cCC---ce--ee------EEEECC--------------
Confidence 00 0000 00000 00000011100 000 00 11 222111
Q ss_pred cccCCcccCcc-ceehhhHHHHHHHHHHHHhh--------------hhcccc--chhhhhhh-hcC--C-CccchHHHHH
Q 003041 723 GMFGTKQVPAV-GVSLGIERVFTIMEQIQKER--------------NQIIRA--TETQVLVG-LLG--D-KLPLAAELVS 781 (854)
Q Consensus 723 ~~fg~~~~pAv-GfsigieRL~~~L~~~~~~~--------------~~~~~~--~~~dVlV~-~~~--~-~~~~a~~la~ 781 (854)
+.+.+|.| ..++|+||++.++.+++... ...|++ +|+||+|+ +.+ + ....+.++++
T Consensus 286 ---~~~~~P~vi~~s~Gv~R~i~aile~~~~~~~~~~~~g~d~~r~~l~~P~~lAP~qV~Ii~~~~~~e~~~~~A~~l~~ 362 (454)
T 1g5h_A 286 ---RKNVVPCVLSVSGDVDLGTLAYLYDSFQLAENSFARKKSLQRKVLKLHPCLAPIKVALDVGKGPTVELRQVCQGLLN 362 (454)
T ss_dssp ---TEEECCEEEEEEEEHHHHHHHHHHHHEEC------------CCEECCCTTTCSCCEEEEECSSCHHHHHHHHHHHHH
T ss_pred ---CCcEeeEEEeCcccHHHHHHHHHHHhcchhhcccccCCcccceeEecCcccCCCeEEEEEeCCCcHHHHHHHHHHHH
Confidence 11234644 67899999975554433210 123444 68999999 665 3 4678999999
Q ss_pred HHhhhcccee--eee--hhhHHHHHhhhhcCCCceEEEeecccccccceeeeccccchhhhcchhhhHHHHHHhh
Q 003041 782 ELWNAKVKAE--YMV--HKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 852 (854)
Q Consensus 782 ~Lr~~GI~ae--l~~--~~~l~k~l~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l 852 (854)
+||++||+|+ ++. +.++++++++|++.|+||+|+||++|+++|+|+||++.++++..|++++++++|++.+
T Consensus 363 ~Lr~~Gi~v~~~~Ddr~~~sigkk~r~Ad~~GiP~~IiVG~~Ele~g~VtvR~r~t~eq~~v~l~el~~~l~~~l 437 (454)
T 1g5h_A 363 ELLENGISVWPGYSETVHSSLEQLHSKYDEMSVLFSVLVTETTLENGLIQLRSRDTTMKEMMHISKLRDFLVKYL 437 (454)
T ss_dssp HHHHTTCCEEEGGGSCCCSCHHHHHHHHHHTTCSEEEEECHHHHHHCEEEEEETTTCCEEEEETTSHHHHHHHHH
T ss_pred HHHHCCCEEEEEecCCCCCCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEECCCCcEEEEEHHHHHHHHHHHH
Confidence 9999999996 665 4579999999999999999999999999999999999999999999999999998765
No 37
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=99.85 E-value=2.4e-22 Score=226.84 Aligned_cols=312 Identities=14% Similarity=0.114 Sum_probs=201.5
Q ss_pred ccch-hhHHhHHHHHHHhHHHHHHHHHh-cC-ccccCcchhHhHHhhhhccCCCchhhhhhhhccCCceeeecccccchh
Q 003041 435 KGTR-DFAKEQMAVREKAFSIITEVFKR-HG-AMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFA 511 (854)
Q Consensus 435 ~G~~-D~lp~~~~~~~~i~~~l~~if~~-~G-~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D~~G~~l~LRpDlT~~~a 511 (854)
.|.+ ||+|.++.+++.|++.+++.|.. .| +.+|+||..++ | ..+|++. -|+ +.|||+.+..+.
T Consensus 93 ~g~~p~~gP~G~~l~~nl~~~w~~~~~~~~~~~~eV~tp~~~~---~-~~SGH~d--~~~--------~~LRPeTaqg~~ 158 (459)
T 3ikl_A 93 SGCHPGFGPLGVELRKNLAAEWWTSVVVFREQVFPVDALHHKP---G-PLLPGDS--AFR--------GGLRENLLHGAL 158 (459)
T ss_dssp TTCSCCBCHHHHHHHHHHHHHHHHHHTTSSCSCEECCCCSBCC---S-CCCSSCS--CCT--------TB-CSCSHHHHH
T ss_pred cccccccCCcHHHHHHHHHHHHHHHHhhccCceEeeccccccc---c-ccCcchh--hhc--------ceECCCCChhHH
Confidence 3555 99999999999999977777754 66 55599999443 4 3478863 233 899999887765
Q ss_pred hhhh----hc-cccchhhhhhhhhhcccC----CCCc--cccccccccccccccccccCCC-hhhHHHHHHHhhhcCCCc
Q 003041 512 RYVA----MN-GLTSFKRHQIAKVYRRDN----PSKG--RYREFYQCDFDIAGQYERMGPD-FEVVKILTELLNELDIGD 579 (854)
Q Consensus 512 R~~a----~~-~~~p~K~y~ig~VfR~e~----p~~G--r~REf~Q~d~eiig~~~~~~aD-aEvI~l~~eil~~Lgl~~ 579 (854)
-.+. .+ +.+|+|+.++|++||+|. +..| |.|||.|.+.++|..++....+ .+++....++++.||+.+
T Consensus 159 ~nfk~~~~s~r~~LP~~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~F~~Pe~~~e~~~~~~~~~~~~~~~LGi~~ 238 (459)
T 3ikl_A 159 EHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRHRLQWWRKFAMSP 238 (459)
T ss_dssp HHTTTTTGGGTTBSSEEEEEEEEEECCC----------CCCCEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHCSSG
T ss_pred HHHhhhhhhccccCCeEEEEEeeeeecccccccCCCCcccccceeeeeEEEEeChhHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 4433 23 378999999999999993 4444 9999999999999986542222 235677888888999865
Q ss_pred ceeeechhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHHHHHHHhcCcceeecccccccccccCChHHHHHHHhh
Q 003041 580 YEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQ 659 (854)
Q Consensus 580 ~~i~Lnh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~gl~~~~~~~L~~l~~~~g~~~~vl~~l~~ 659 (854)
..+++... +.++ +.+. .+.-..|+. |..
T Consensus 239 ~~~r~~~~------------~~ee------A~~~-----------------------~DiE~~~p~--G~~--------- 266 (459)
T 3ikl_A 239 SNFSSSDC------------QDEE------GRKG-----------------------NKLYYNFPW--GKE--------- 266 (459)
T ss_dssp GGEEEEEE------------CCSS------SSCE-----------------------EEEEEECSS--CEE---------
T ss_pred hhEEEeec------------CchH------HHhh-----------------------cCeEEEcCC--ceE---------
Confidence 44443321 0010 0000 000000100 100
Q ss_pred hcchhhcccccccccchHHHHHHHhhhccccceeeeeccc---cccCcccccccccccCCcccccccccCCcccC-ccce
Q 003041 660 EGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSL---ARGLDYYTGVGSIAAGGRYDNLIGMFGTKQVP-AVGV 735 (854)
Q Consensus 660 ~~~~~~~~~~~~~al~~L~~l~~~l~~~gv~~~I~~D~sl---~rgl~YYtG~~~Ia~GGRYD~Li~~fg~~~~p-AvGf 735 (854)
.+ .|+.+...||+.- ..+.+| ++. .| +.+-+| .+..
T Consensus 267 ---E~----------------------~g~sn~tDfqL~~~~~~~~~~~-~~~-----dg---------~~k~~P~vi~~ 306 (459)
T 3ikl_A 267 ---LI----------------------ETLWNLGDHELLHMYPGNVSKL-HGR-----DG---------RKNVVPCVLSV 306 (459)
T ss_dssp ---EE----------------------EEEEEEETHHHHHHSCSCSSSS-CCB-----SS---------SCBCCCEEEEE
T ss_pred ---EE----------------------eeeeccchhhhhccccccCcee-Ecc-----CC---------CeeeeeEEEEe
Confidence 00 0000011111100 001112 110 01 011234 4468
Q ss_pred ehhhHHHHHHHHHHHHh-hh-------------hcccc--chhhhhhhhcC----C-CccchHHHHHHHhhhcccee--e
Q 003041 736 SLGIERVFTIMEQIQKE-RN-------------QIIRA--TETQVLVGLLG----D-KLPLAAELVSELWNAKVKAE--Y 792 (854)
Q Consensus 736 sigieRL~~~L~~~~~~-~~-------------~~~~~--~~~dVlV~~~~----~-~~~~a~~la~~Lr~~GI~ae--l 792 (854)
++|+||++.++.++..+ .. ..|++ +|++|.|+ .. + ....+.+|+++|+++||+|+ +
T Consensus 307 s~Gv~R~~~AiLe~~~de~~~~~~~~~~~~R~vl~lP~~LAP~qV~Ii-i~~~~~e~~~~~A~~L~~~Lr~~GIrV~~d~ 385 (459)
T 3ikl_A 307 NGDLDRGMLAYLYDSFQLTENSFTRKKNLHRKVLKLHPCLAPIKVALD-VGRGPTLELRQVCQGLFNELLENGISVWPGY 385 (459)
T ss_dssp EEEHHHHHHHHHHTTCC-------------CCCCCCCTTTCSCCEEEE-ESSCCSTTHHHHHHHHHHHHHHTSCCEECGG
T ss_pred cccHHHHHHHHHHHHhhhccccccccccccceEEEeCcccCCceEEEE-eCCCCCHHHHHHHHHHHHHHHHCCCeEEEee
Confidence 89999987665543111 11 34554 68999888 44 2 45679999999999999999 5
Q ss_pred ee--hhhHHHHHhhhhcCCCceEEEeecccccccceeeeccccchhhhcchhhhHHHHHHhhc
Q 003041 793 MV--HKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 853 (854)
Q Consensus 793 ~~--~~~l~k~l~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~ 853 (854)
+. +.+++++|++|++.|+||+|+||++|+++|+|+||++.++++..|+++|++++|+++++
T Consensus 386 Ddr~~~siGkK~r~Ad~iGiPy~IiVG~kEle~g~VtVR~Rdtgeq~~v~ldeli~~l~~~i~ 448 (459)
T 3ikl_A 386 LETMQSSLEQLYSKYDEMSILFTVLVTETTLENGLIHLRSRDTTMKEMMHISKLKDFLIKYIS 448 (459)
T ss_dssp GSSSCCTTHHHHHHHGGGTCSEEEEECTTSTTSSEEEEEETTTCCCCCEETTHHHHHHHHHHH
T ss_pred cCCcCCCHHHHHHHHHHcCCCEEEEECchhhhCCEEEEEECCCCceEEEEHHHHHHHHHHHHh
Confidence 54 36799999999999999999999999999999999999999999999999999988764
No 38
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=99.66 E-value=2e-17 Score=187.47 Aligned_cols=149 Identities=16% Similarity=0.166 Sum_probs=127.0
Q ss_pred CCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC---chhhhhhhhccCCceeeecccccc
Q 003041 433 LPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDLTVP 509 (854)
Q Consensus 433 ~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~~G~~l~LRpDlT~~ 509 (854)
..+|++||+|.++.+++.|++.+++.|.+|||++|.||.|++.++|.. +|++ .++||++. ++.++|||+.|+|
T Consensus 160 ~g~G~~~~~p~ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~-sG~~~~f~~emy~~~---~~~l~LrPt~e~~ 235 (425)
T 2dq3_A 160 SGSRFTVIAGWGARLERALINFMLDLHTKKGYKEICPPHLVKPEILIG-TGQLPKFEEDLYKCE---RDNLYLIPTAEVP 235 (425)
T ss_dssp HCSSCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHH-HSCTTTTGGGSCBCT---TTCCEECSSTHHH
T ss_pred cCCCceEECcHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHh-cCCCCcChhhheEec---CCeEEEcCCCcHH
Confidence 358999999999999999999999999999999999999999999966 6764 47899885 4679999999999
Q ss_pred hhhhhhhc----cccchhhhhhhhhhcccCCCC-----c--cccccccccccccccccccC-CChhhHHHHHHHhhhcCC
Q 003041 510 FARYVAMN----GLTSFKRHQIAKVYRRDNPSK-----G--RYREFYQCDFDIAGQYERMG-PDFEVVKILTELLNELDI 577 (854)
Q Consensus 510 ~aR~~a~~----~~~p~K~y~ig~VfR~e~p~~-----G--r~REf~Q~d~eiig~~~~~~-aDaEvI~l~~eil~~Lgl 577 (854)
++++++.. +.+|+|+||+|+|||+|.++. | |.|||+|.++++|+.++... ...|++.++.++|+.||+
T Consensus 236 i~~~~~~~i~s~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~f~~pe~s~~~~~e~i~~~~~il~~LGL 315 (425)
T 2dq3_A 236 LTNLYREEILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVHPDTSYDELEKLVKDAEEVLQLLGL 315 (425)
T ss_dssp HHGGGTTEEEETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhccccccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEEECCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 99999863 467999999999999998653 3 99999999999999865321 126899999999999999
Q ss_pred Ccce-eeech
Q 003041 578 GDYE-IKLNH 586 (854)
Q Consensus 578 ~~~~-i~Lnh 586 (854)
. |. +.++.
T Consensus 316 ~-~rvv~l~~ 324 (425)
T 2dq3_A 316 P-YRVVELCT 324 (425)
T ss_dssp C-EEEEECCT
T ss_pred c-eEEEEecC
Confidence 5 65 44443
No 39
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=99.60 E-value=1.6e-16 Score=179.69 Aligned_cols=144 Identities=13% Similarity=0.217 Sum_probs=124.9
Q ss_pred CCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC---chhhhhhhhccCCceeeecccccc
Q 003041 433 LPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDLTVP 509 (854)
Q Consensus 433 ~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~~G~~l~LRpDlT~~ 509 (854)
...|+++|+|.++.+++.|++.+++.+.++||++|.||.|++.++|.. +|++ .++||++.| +.++|+|+.|++
T Consensus 154 ~g~G~~~~~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~-sG~~~~f~~emy~~~d---~~l~L~Pt~e~~ 229 (421)
T 1ses_A 154 SGSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLG-TGHFPAYRDQVWAIAE---TDLYLTGTAEVV 229 (421)
T ss_dssp HCSSCCCEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHH-HTCTTTTGGGSCBBTT---SSEEECSSTHHH
T ss_pred cCCCeEEECcHHHHHHHHHHHHHHHHHHHcCCEEEeCCceecHHHHHh-cCCCCcCchhcEEEcC---CeEEEeecCcHH
Confidence 347999999999999999999999999999999999999999999976 6875 478999865 679999999999
Q ss_pred hhhhhhhc----cccchhhhhhhhhhccc-----CCCCc--cccccccccccccccc--cccCCC-hhhHHHHHHHhhhc
Q 003041 510 FARYVAMN----GLTSFKRHQIAKVYRRD-----NPSKG--RYREFYQCDFDIAGQY--ERMGPD-FEVVKILTELLNEL 575 (854)
Q Consensus 510 ~aR~~a~~----~~~p~K~y~ig~VfR~e-----~p~~G--r~REf~Q~d~eiig~~--~~~~aD-aEvI~l~~eil~~L 575 (854)
+++++... +.+|+|+|++|+|||+| +|..| |.|||+|++.++|+.+ +....+ .|++.++.++|+.|
T Consensus 230 ~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~~~~~~il~~L 309 (421)
T 1ses_A 230 LNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLL 309 (421)
T ss_dssp HHHTTTTCEEEGGGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcccccCchhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 99998853 46799999999999999 67778 9999999999999976 332111 37899999999999
Q ss_pred CCCcce
Q 003041 576 DIGDYE 581 (854)
Q Consensus 576 gl~~~~ 581 (854)
|+. |.
T Consensus 310 GL~-~r 314 (421)
T 1ses_A 310 ELP-YR 314 (421)
T ss_dssp TCC-EE
T ss_pred CCc-eE
Confidence 995 54
No 40
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=99.59 E-value=3.9e-16 Score=177.89 Aligned_cols=150 Identities=16% Similarity=0.129 Sum_probs=126.7
Q ss_pred CCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC---chhhhhhhhccCCceeeecccccc
Q 003041 433 LPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDLTVP 509 (854)
Q Consensus 433 ~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~~G~~l~LRpDlT~~ 509 (854)
...|+++|+|.++.+++.|++.+++.++++||++|.||.|++.++|.. +|++ .++||++.| +.++|||+.|++
T Consensus 181 ~g~G~~~~~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~-sG~~~~f~~emy~~~d---~~l~LrPt~e~~ 256 (455)
T 2dq0_A 181 SGSRFYYLLNEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEG-STSFEDFEDVIYKVED---EDLYLIPTAEHP 256 (455)
T ss_dssp TCTTCCEEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHT-TSCTTHHHHTCCBBTT---SSCEECSSTHHH
T ss_pred cCCCeEEECCHHHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHh-cCCCCCChHhhCeecC---CcEEEcCcCcHH
Confidence 457999999999999999999999999999999999999999999976 5875 378999864 679999999999
Q ss_pred hhhhhhhc----cccchhhhhhhhhhcccCCCCc-------cccccccccccccccccccCCC-hhhHHHHHHHhhhcCC
Q 003041 510 FARYVAMN----GLTSFKRHQIAKVYRRDNPSKG-------RYREFYQCDFDIAGQYERMGPD-FEVVKILTELLNELDI 577 (854)
Q Consensus 510 ~aR~~a~~----~~~p~K~y~ig~VfR~e~p~~G-------r~REf~Q~d~eiig~~~~~~aD-aEvI~l~~eil~~Lgl 577 (854)
+++++... +.+|+|+|++|+|||+|.++.| |.|||+|.+.++|+.++....+ .|++.++.++|+.||+
T Consensus 257 ~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~~f~~pe~s~~~~~e~l~~~~~il~~LGL 336 (455)
T 2dq0_A 257 LAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPEESWEWHEKIIRNAEELFQELEI 336 (455)
T ss_dssp HHHTTTTEEEETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEEEECTTTHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCccCchhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEEEecCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99998863 4689999999999999987654 9999999999999875321111 2789999999999999
Q ss_pred Ccceeeechh
Q 003041 578 GDYEIKLNHR 587 (854)
Q Consensus 578 ~~~~i~Lnh~ 587 (854)
. |.+....+
T Consensus 337 ~-yrv~~~~~ 345 (455)
T 2dq0_A 337 P-YRVVNICT 345 (455)
T ss_dssp C-EEEEECCG
T ss_pred c-eEEEECCC
Confidence 4 66555433
No 41
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=99.55 E-value=1.4e-15 Score=175.08 Aligned_cols=164 Identities=19% Similarity=0.179 Sum_probs=132.5
Q ss_pred CCCCCCchHHHHHHHHHHHhhcccCCCCC-CCccchhhHHhHHHHHHHhHHHHHH-HHHhcCccccCcchhHhHHhhhhc
Q 003041 404 FDPRDPEFDGLLTKIREIVESNESRRLPK-LPKGTRDFAKEQMAVREKAFSIITE-VFKRHGAMALDTPVFEMRETLMGK 481 (854)
Q Consensus 404 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~G~~D~lp~~~~~~~~i~~~l~~-if~~~G~~eI~tP~le~~e~~~~~ 481 (854)
.+|.+-.|.+++.+ ++++.+ .++|++||+|.++.+++.|++.+++ ++.++||++|.||.|++.++|..
T Consensus 198 e~~f~~~~~~ll~r---------aG~i~~~~~~G~y~~~P~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~- 267 (522)
T 2cja_A 198 EHPFKEDPTQAMMK---------EGWLKRGSSRGQWIHGPQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMK- 267 (522)
T ss_dssp CCCCCSCHHHHHHH---------TTSEEECSSTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHH-
T ss_pred CCCcchHHHHHHHH---------CCCeeeeCCCCeEEECchHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhh-
Confidence 34555566655432 345545 7899999999999999999999996 58999999999999999999976
Q ss_pred cCCC---chhhhhhh-----h-------------------------ccCCceeeecccccchhhhhhhc----cccchhh
Q 003041 482 YGED---SKLIYDLA-----D-------------------------QGGELCSLRYDLTVPFARYVAMN----GLTSFKR 524 (854)
Q Consensus 482 ~g~~---~k~~y~~~-----D-------------------------~~G~~l~LRpDlT~~~aR~~a~~----~~~p~K~ 524 (854)
+|+. .++||++. | .+++.++|||+.|+++.+++... +.+|+|+
T Consensus 268 SGh~~~F~demy~v~~~~~Rd~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl 347 (522)
T 2cja_A 268 SGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTKLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKV 347 (522)
T ss_dssp HTGGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSCCHHHHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEE
T ss_pred cCCcCccccceeeeecCCccchhhhhhhhhhhhccccccccccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeE
Confidence 6764 47899884 2 14688999999999999988753 4579999
Q ss_pred hh-hhhhhcccCCC--C--ccccccccccccccccccccCCC-hhhH-HHHHHHhhhcCCC
Q 003041 525 HQ-IAKVYRRDNPS--K--GRYREFYQCDFDIAGQYERMGPD-FEVV-KILTELLNELDIG 578 (854)
Q Consensus 525 y~-ig~VfR~e~p~--~--Gr~REf~Q~d~eiig~~~~~~aD-aEvI-~l~~eil~~Lgl~ 578 (854)
|+ +|++||+| |+ . +|.|||+|.++++|+.++....+ .+++ ....++++.||+.
T Consensus 348 ~q~ig~~FR~E-pgs~~GL~R~REF~q~E~~~F~~pe~s~ee~ee~i~~~~~~~l~~LGLp 407 (522)
T 2cja_A 348 FDRSGTSHRYE-SGGIHGIERVDEFHRIEIVWIGTKEEVLKCAEELHDRYMHIFNDILDIE 407 (522)
T ss_dssp EECSSEEECCC-SSSCCCTTSCSEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred EEEcCceEeCC-CCCCCCCeEeEEEEEeeEEEEeChHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99 99999999 76 4 69999999999999986543222 3567 7778888999996
No 42
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.49 E-value=8.1e-15 Score=157.89 Aligned_cols=136 Identities=12% Similarity=0.097 Sum_probs=113.0
Q ss_pred HHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCch-hhhhhhhccCCceeeecccccchhhhhhh---ccccc
Q 003041 446 AVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSK-LIYDLADQGGELCSLRYDLTVPFARYVAM---NGLTS 521 (854)
Q Consensus 446 ~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k-~~y~~~D~~G~~l~LRpDlT~~~aR~~a~---~~~~p 521 (854)
..++++++.++++|..+||.||.||.|++.+.|.. .|...+ +||++.++-++.++|||++++++.+.+.. ++..|
T Consensus 71 h~~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~-~g~~~~~~m~~~~npl~e~~~LRp~l~p~l~~~~r~~~~~~~~P 149 (288)
T 3dsq_A 71 PALLELEEKLAKALHQQGFVQVVTPTIITKSALAK-MTIGEDHPLFSQVFWLDGKKCLRPMLAPNLYTLWRELERLWDKP 149 (288)
T ss_dssp CHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHT-TSSCC--CCTTTSCEEETTEEECSCSHHHHHHHHHHHTTTSCSC
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCeeecHHHHhh-cCCCcccccEEeecccccchhhhhcChHHHHHHHHHHHhCCCCC
Confidence 34588889999999999999999999999998764 555433 68888777667789999999998865543 35679
Q ss_pred hhhhhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhhhcCCCcceee
Q 003041 522 FKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIGDYEIK 583 (854)
Q Consensus 522 ~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~Lgl~~~~i~ 583 (854)
+|+|++|+|||+|.++.+|.+||+|++++++|..+. ...+|++.++.++++.||+++|.+.
T Consensus 150 lrlfeiG~vFR~E~~~~~r~~EF~qle~~i~g~~~~-~~f~elkg~le~ll~~LGl~~~~~~ 210 (288)
T 3dsq_A 150 IRIFEIGTCYRKESQGAQHLNEFTMLNLTELGTPLE-ERHQRLEDMARWVLEAAGIREFELV 210 (288)
T ss_dssp EEEEEEEEEECSCCSSSCCCSEEEEEEEEEETCCGG-GHHHHHHHHHHHHHHHHTCCCCEEE
T ss_pred EEEEEEeeEEecCCCCCCcCccEEEEEEEEEcCCch-hhHHHHHHHHHHHHHHcCCCCcEEe
Confidence 999999999999999889999999999999997433 3468999999999999998665553
No 43
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=99.41 E-value=4.8e-14 Score=152.40 Aligned_cols=124 Identities=19% Similarity=0.219 Sum_probs=92.7
Q ss_pred hHHHHHHHhHHHHHHHHHhcCccccCcchhHhH-Hhhhhc-cCCCchhhhhhhhccCCceeeecccccchhhhhhhcccc
Q 003041 443 EQMAVREKAFSIITEVFKRHGAMALDTPVFEMR-ETLMGK-YGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGLT 520 (854)
Q Consensus 443 ~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~-e~~~~~-~g~~~k~~y~~~D~~G~~l~LRpDlT~~~aR~~a~~~~~ 520 (854)
....++.++.+.++++|.++||.||+||+|++. +++... .++. .++|.+. ..|+.+.||..-....-+.++. .
T Consensus 13 ~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~-a~~f~~~-~~~~~~~L~~Spe~~~~~l~~~---g 87 (294)
T 1nnh_A 13 PTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEG-MEPAEVE-IYGVKMRLTHSMILHKQLAIAM---G 87 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCC-CCCCEEE-ETTEEEEECSCSHHHHHHHHHT---T
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCc-ceeEEEE-cCCCCEEeccChHHHHHHHhhc---C
Confidence 456889999999999999999999999999998 666554 4444 5567642 3345667763222222222221 2
Q ss_pred chhhhhhhhhhcccCCCC--cccc-ccccccccccccccccCCChhhHHHHHHHhhhcC
Q 003041 521 SFKRHQIAKVYRRDNPSK--GRYR-EFYQCDFDIAGQYERMGPDFEVVKILTELLNELD 576 (854)
Q Consensus 521 p~K~y~ig~VfR~e~p~~--Gr~R-Ef~Q~d~eiig~~~~~~aDaEvI~l~~eil~~Lg 576 (854)
+.|+|++|+|||+|+||. +|.+ ||+|+++|+++.. +.|++.++.++++.+.
T Consensus 88 ~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~~-----~~~l~~~~e~l~~~l~ 141 (294)
T 1nnh_A 88 LKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAK-----MEDIMRLIERLVYGLF 141 (294)
T ss_dssp CCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCC-----HHHHHHHHHHHHHHHH
T ss_pred ccceEEEEccEeCCCCCCCCCccccceeEEEEEecCCC-----HHHHHHHHHHHHHHHH
Confidence 679999999999999764 6888 9999999999962 5689999888888774
No 44
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=99.39 E-value=6.3e-14 Score=160.24 Aligned_cols=148 Identities=14% Similarity=0.111 Sum_probs=121.6
Q ss_pred CccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC---chhhhhhhhc--------cCCceee
Q 003041 434 PKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQ--------GGELCSL 502 (854)
Q Consensus 434 p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~--------~G~~l~L 502 (854)
..|++.|.|.++.+++.+++.+++.+.++||++|.||.|.+.++|.. +|++ .++||++.|. .++.++|
T Consensus 190 Gsgfy~l~p~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~el~~~-sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L 268 (522)
T 3vbb_A 190 GSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQE-VAQLSQFDEELYKVIGKGSEKSDDNSYDEKYL 268 (522)
T ss_dssp STTCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHH-HSCCC-CCSCCCEEC------------CCEEE
T ss_pred CcceEEEcCHHHHHHHHHHHHHHHHHHHcCCEEEECCcccchHHHhh-cCCcccCcccceEeecCCccccccccCcceeE
Confidence 36899999999999999999999999999999999999999999865 7765 3789999875 3678999
Q ss_pred ecccccchhhhhhh----ccccchhhhhhhhhhcccCCC-----C--ccccccccccccccccccc--cCCC-hhhHHHH
Q 003041 503 RYDLTVPFARYVAM----NGLTSFKRHQIAKVYRRDNPS-----K--GRYREFYQCDFDIAGQYER--MGPD-FEVVKIL 568 (854)
Q Consensus 503 RpDlT~~~aR~~a~----~~~~p~K~y~ig~VfR~e~p~-----~--Gr~REf~Q~d~eiig~~~~--~~aD-aEvI~l~ 568 (854)
+|..++|++.++.. ++.+|+|+|++++|||+|.+. . -|.|||.|.+..+|+.++. ...+ .+++..+
T Consensus 269 ~PTaE~~l~~l~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~f~~pe~e~s~~e~e~ml~~~ 348 (522)
T 3vbb_A 269 IATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTA 348 (522)
T ss_dssp CSSTHHHHHTTSTTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHhhhecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEEEeCCChHHHHHHHHHHHHHH
Confidence 99999999988764 357899999999999999753 2 3889999999999998542 2111 4678899
Q ss_pred HHHhhhcCCCcceee
Q 003041 569 TELLNELDIGDYEIK 583 (854)
Q Consensus 569 ~eil~~Lgl~~~~i~ 583 (854)
.++|+.||+. |.+.
T Consensus 349 e~il~~LGLp-yrvv 362 (522)
T 3vbb_A 349 EEFYQSLGIP-YHIV 362 (522)
T ss_dssp HHHHHHTTCC-EEEE
T ss_pred HHHHHHcCCc-eEEE
Confidence 9999999994 5443
No 45
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=99.36 E-value=1.4e-13 Score=157.74 Aligned_cols=148 Identities=14% Similarity=0.129 Sum_probs=125.1
Q ss_pred CCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC---ch-hhhhhhhccCCceeeeccccc
Q 003041 433 LPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SK-LIYDLADQGGELCSLRYDLTV 508 (854)
Q Consensus 433 ~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~---~k-~~y~~~D~~G~~l~LRpDlT~ 508 (854)
...|++.|.|.++.+++.|++.+++.+.++||++|.||.|.+.++|.. +|++ .+ +||++.|.+++.++|+|..++
T Consensus 207 ~G~g~~~l~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~-sG~~~~f~e~emf~v~~~~~~~l~L~PTaE~ 285 (501)
T 1wle_A 207 SGHRSYYLRGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEG-CGMTPNAKPSQIYNIDPSRFEDLNLAGTAEV 285 (501)
T ss_dssp TCTTCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHH-HTCCSSSSSCSSCBBCTTTSSSCEECSSHHH
T ss_pred ccCceEEEcChHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHHh-hcCCCccCccccEEEecCCCCeEEECCcCcH
Confidence 457899999999999999999999999999999999999999999865 6764 24 899998877788999999999
Q ss_pred chhhhhhh----ccccchhhhhhhhhhcccCC----CCc--ccccccccccccccccc--ccCCC-hhhHHHHHHHhhhc
Q 003041 509 PFARYVAM----NGLTSFKRHQIAKVYRRDNP----SKG--RYREFYQCDFDIAGQYE--RMGPD-FEVVKILTELLNEL 575 (854)
Q Consensus 509 ~~aR~~a~----~~~~p~K~y~ig~VfR~e~p----~~G--r~REf~Q~d~eiig~~~--~~~aD-aEvI~l~~eil~~L 575 (854)
+++.++.. ++.+|+|+|++++|||+|.. ..| |.|||.|.+.++|+.++ ....+ .+++..+.++|+.|
T Consensus 286 ~~~~l~~~~i~s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s~~~~e~~l~~~~~il~~L 365 (501)
T 1wle_A 286 GLAGYFMDHSVAFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQMEILTEL 365 (501)
T ss_dssp HHHHHHTTEEEEGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhccCCcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHC
Confidence 99998875 35789999999999999954 233 88999999999999862 22222 46789999999999
Q ss_pred CCCccee
Q 003041 576 DIGDYEI 582 (854)
Q Consensus 576 gl~~~~i 582 (854)
|+. |.+
T Consensus 366 gLp-yrv 371 (501)
T 1wle_A 366 GLH-FRV 371 (501)
T ss_dssp TCC-EEE
T ss_pred CCc-EEE
Confidence 994 654
No 46
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=99.30 E-value=3.7e-13 Score=153.07 Aligned_cols=147 Identities=13% Similarity=0.183 Sum_probs=122.3
Q ss_pred CccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC---chhhhhhhhccCCceeeecccccch
Q 003041 434 PKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDLTVPF 510 (854)
Q Consensus 434 p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~~G~~l~LRpDlT~~~ 510 (854)
..|++.|.|.++.+.+.+++.+++.+.++||+||.||.|.+.++|.. +|++ .++||++.|. ++.++|+|..++|+
T Consensus 197 Gsgf~~~~p~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~~~-sG~~~~f~e~mf~v~~~-~~~~~L~PTaE~~l 274 (484)
T 3lss_A 197 GGRSYVLKGGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVMGE-VAQLSQFDEELYQVSGD-GDKKYLIATSEMPI 274 (484)
T ss_dssp CTTCCEEEHHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHH-HSCHHHHHHTCCEEESS-SSCEEECSSTHHHH
T ss_pred CceEEEECCHHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHHh-cCCcccccccceEeecC-CcceEEeccCcHHH
Confidence 45788899999999999999999999999999999999999999865 7876 3689998654 67899999999999
Q ss_pred hhhhhh----ccccchhhhhhhhhhcccCCC-----Cc--cccccccccccccccccc--cCCC-hhhHHHHHHHhhhcC
Q 003041 511 ARYVAM----NGLTSFKRHQIAKVYRRDNPS-----KG--RYREFYQCDFDIAGQYER--MGPD-FEVVKILTELLNELD 576 (854)
Q Consensus 511 aR~~a~----~~~~p~K~y~ig~VfR~e~p~-----~G--r~REf~Q~d~eiig~~~~--~~aD-aEvI~l~~eil~~Lg 576 (854)
+-++.. ++.+|+|+|+++++||+|... .| |.|||+|.+..+|+.++. ...+ .+++..+.++|+.||
T Consensus 275 ~~l~~~~i~sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~f~~pe~~~s~~e~e~~~~~~e~il~~LG 354 (484)
T 3lss_A 275 AAYHRGRWFTELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFVVCSPRQEESWRHLEDMITTSEEFNKSLG 354 (484)
T ss_dssp HHHTTTCEESCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhccccchhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHcC
Confidence 877764 467899999999999999632 23 899999999999998653 2222 357888999999999
Q ss_pred CCcceee
Q 003041 577 IGDYEIK 583 (854)
Q Consensus 577 l~~~~i~ 583 (854)
+. |.+.
T Consensus 355 Lp-yrvv 360 (484)
T 3lss_A 355 LP-YRVV 360 (484)
T ss_dssp CC-EEEE
T ss_pred Cc-EEEE
Confidence 94 5543
No 47
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=99.25 E-value=1.3e-12 Score=151.29 Aligned_cols=145 Identities=12% Similarity=0.205 Sum_probs=121.4
Q ss_pred CccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC---chhhhhhhhccCCceeeecccccch
Q 003041 434 PKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDLTVPF 510 (854)
Q Consensus 434 p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~~G~~l~LRpDlT~~~ 510 (854)
..|++.|.|.++.+.+.+++.+++.+.++||+||.||.|.+.++|.. +|++ .++||++.| +.++|+|..++++
T Consensus 264 G~g~~~~~p~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l~~~-sG~~~~f~e~mf~~~~---~~~~L~PT~E~~~ 339 (536)
T 3err_A 264 GSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLG-TGHFPAYRDQVWAIAE---TDLYLTGTAEVVL 339 (536)
T ss_dssp CSSCCCEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHH-HTCTTTTGGGCCEETT---TTEEECSSTHHHH
T ss_pred CCceeEEcCHHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHHh-cCCcccChhhceEecC---CCEEEccCCcHHH
Confidence 46889999999999999999999999999999999999999999865 7875 378999865 6799999999999
Q ss_pred hhhhhh----ccccchhhhhhhhhhcccCC-----CCc--ccccccccccccccccc--ccCCC-hhhHHHHHHHhhhcC
Q 003041 511 ARYVAM----NGLTSFKRHQIAKVYRRDNP-----SKG--RYREFYQCDFDIAGQYE--RMGPD-FEVVKILTELLNELD 576 (854)
Q Consensus 511 aR~~a~----~~~~p~K~y~ig~VfR~e~p-----~~G--r~REf~Q~d~eiig~~~--~~~aD-aEvI~l~~eil~~Lg 576 (854)
+-++.. ++.+|+|+|++|++||+|.. ..| |.|||+|.+..+|+.++ ....+ .+++..+.++|+.||
T Consensus 340 ~~l~~~~i~s~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~f~~pe~e~s~~~~e~~~~~~~~i~~~Lg 419 (536)
T 3err_A 340 NALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLE 419 (536)
T ss_dssp HHHTTTCEEEGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcccccHhhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEEEECCchHHHHHHHHHHHHHHHHHHHHcC
Confidence 877664 46789999999999999963 223 89999999999999865 32222 357788999999999
Q ss_pred CCcceee
Q 003041 577 IGDYEIK 583 (854)
Q Consensus 577 l~~~~i~ 583 (854)
+. |.+.
T Consensus 420 Lp-yrvv 425 (536)
T 3err_A 420 LP-YRLV 425 (536)
T ss_dssp CC-EEEE
T ss_pred Cc-EEEE
Confidence 95 5443
No 48
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=99.21 E-value=1.7e-12 Score=147.52 Aligned_cols=147 Identities=14% Similarity=0.166 Sum_probs=120.9
Q ss_pred CccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC---chhhhhhhhccCCceeeecccccch
Q 003041 434 PKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDLTVPF 510 (854)
Q Consensus 434 p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~~G~~l~LRpDlT~~~ 510 (854)
..|++.|.|.++.+++.+++.+++.+.++||++|.||.|.+.++|.. +|++ .++||++.|. ++.+.|.|....|+
T Consensus 174 Gsg~~~l~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~-sG~l~~f~eemf~v~~~-~~~~~LipTaE~pl 251 (485)
T 3qne_A 174 GHRGYFLRNYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAK-TAQLSQFDEELYKVIDG-EDEKYLIATSEQPI 251 (485)
T ss_dssp CTTCCEECTHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHH-HSCHHHHTTTCCEEEET-TEEEEECSSTHHHH
T ss_pred cceeEEEecHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhh-cCCccccccceEEEeCC-CCeEEEeccccHHH
Confidence 45888899999999999999999999999999999999999999865 6765 3679999764 56799999999998
Q ss_pred hhhhhh------ccccchhhhhhhhhhcccCCC-----Cc--cccccccccccccccccccCCC-hhhHHHHHHHhhhcC
Q 003041 511 ARYVAM------NGLTSFKRHQIAKVYRRDNPS-----KG--RYREFYQCDFDIAGQYERMGPD-FEVVKILTELLNELD 576 (854)
Q Consensus 511 aR~~a~------~~~~p~K~y~ig~VfR~e~p~-----~G--r~REf~Q~d~eiig~~~~~~aD-aEvI~l~~eil~~Lg 576 (854)
..++.. ++.+|+|+|++++|||+|... .| |.|||.|.+..+|+.++....+ .+++..+.++|+.||
T Consensus 252 ~~l~~~ei~~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~f~~pe~s~~e~e~ml~~~e~il~~Lg 331 (485)
T 3qne_A 252 SAYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFVLTEPEKSWEEFDRMIGCSEEFYQSLG 331 (485)
T ss_dssp HHHTTTCEESSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhccccccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEEEeCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 877653 346799999999999999743 23 8899999999999976532222 357889999999999
Q ss_pred CCcceee
Q 003041 577 IGDYEIK 583 (854)
Q Consensus 577 l~~~~i~ 583 (854)
+. |.+.
T Consensus 332 Lp-yrvv 337 (485)
T 3qne_A 332 LP-YRVV 337 (485)
T ss_dssp CC-EEEE
T ss_pred Cc-EEEE
Confidence 94 5443
No 49
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.20 E-value=8.2e-12 Score=134.90 Aligned_cols=127 Identities=27% Similarity=0.318 Sum_probs=104.7
Q ss_pred HHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC-----chhhhhhhhccCCceeeecccccchhhhhhhc---cc
Q 003041 448 REKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED-----SKLIYDLADQGGELCSLRYDLTVPFARYVAMN---GL 519 (854)
Q Consensus 448 ~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~-----~k~~y~~~D~~G~~l~LRpDlT~~~aR~~a~~---~~ 519 (854)
++++.+.+++.|..+||.||.||.|++.+.+.. .+.. .+.+|.| ++..+|||++++++.+.++++ ..
T Consensus 79 ~~~i~~~ir~~l~~~Gf~EV~Tp~l~~~~~~~~-~~~~~~~p~~~~~~~~----~~~~~LR~slsp~L~~~l~~n~~~~~ 153 (290)
T 3qtc_A 79 LGKLEREITRFFVDRGFLEIKSPILIPLEYIER-MGIDNDTELSKQIFRV----DKNFCLRPMLTPNLYNYLRKLDRALP 153 (290)
T ss_dssp HHHHHHHHHHHHHHTTCEEECCCSEEETHHHHH-TTCCTTSSGGGGCCEE----TTTEEECSCSHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHCCCEEEECCceeeHHHHHh-cCCCcCCchhhhheee----CCCeeEcccChHHHHHHHHHhhccCC
Confidence 578889999999999999999999998876543 3321 2345555 357999999999999988865 36
Q ss_pred cchhhhhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhhhcCCCcceee
Q 003041 520 TSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIGDYEIK 583 (854)
Q Consensus 520 ~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~Lgl~~~~i~ 583 (854)
.|.|+|++|+|||+|.++.+|++||+|++++++|... ..+|+..++.++++.+|+ +|.+.
T Consensus 154 ~p~rlfeiG~vFR~E~~~~~~~~Ef~ql~~~~~g~~~---~f~elkg~le~ll~~lGl-~~~~~ 213 (290)
T 3qtc_A 154 DPIKIFEIGPCYRKESDGKEHLEEFTMLVFWQMGSGC---TRENLESIITDFLNHLGI-DFKIV 213 (290)
T ss_dssp SSEEEEEEEEEECCCSCSSSCCSEEEEEEEEEESTTC---CHHHHHHHHHHHHHHHTC-CCEEE
T ss_pred CCeEEEEEcCEEecCCCCCcCcchheEEEEEEEcCCh---HHHHHHHHHHHHHHHcCC-CcEEe
Confidence 7899999999999998777899999999999999642 467899999999999998 56554
No 50
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=99.03 E-value=9.4e-11 Score=109.91 Aligned_cols=94 Identities=4% Similarity=0.115 Sum_probs=86.3
Q ss_pred cchhhhhhhhcCC-CccchHHHHHHHhhhccceeeee---hhhHHHHHhhhhcCCCceEEEeecccccccceeeecccc-
Q 003041 759 ATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMV---HKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDT- 833 (854)
Q Consensus 759 ~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~---~~~l~k~l~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~- 833 (854)
..|.||.|+++++ ...+|.++.+.|++.||+|+++. +++++++++.|...++||+++||++|.++++|+|+.+..
T Consensus 6 ~~P~Qv~IlpVs~~~~~YA~~V~~~L~~~GiRvevD~~r~~e~Lg~kIR~a~~~kvPy~lVVG~kE~e~~sVsVR~r~~~ 85 (130)
T 1v95_A 6 SGPVDCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQQHQIHRSCTVNIMFGT 85 (130)
T ss_dssp CCCCTEEEEESSSGGGHHHHHHHHHHHTTTCCEEEEECTTSSCHHHHHHHHHHHTCSEEEEECHHHHHHTEEEEEECSSS
T ss_pred CCCCeEEEEEeCcchHHHHHHHHHHHHHCCCEEEEecCCCCCcHHHHHHHHHHcCCCEEEEEechHHhcCeeEEEecCCC
Confidence 3578999999987 78999999999999999999987 368999999999999999999999999999999999887
Q ss_pred -chhhhcchhhhHHHHHHhh
Q 003041 834 -TQEEVISRSNFVEEIQRRL 852 (854)
Q Consensus 834 -~~e~~v~~~elv~~L~~~l 852 (854)
++...++++|+++.|+.++
T Consensus 86 ~~e~~~m~lde~i~~l~~~~ 105 (130)
T 1v95_A 86 PQEHRNMPQADAMVLVARNY 105 (130)
T ss_dssp CCEEEEEEHHHHHHHHHHHH
T ss_pred CCccCccCHHHHHHHHHHHH
Confidence 7788999999999997665
No 51
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=98.81 E-value=8.9e-10 Score=124.48 Aligned_cols=117 Identities=15% Similarity=0.178 Sum_probs=63.3
Q ss_pred HhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhhhccCCceeee--cccccchhhhhhhccc
Q 003041 442 KEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLR--YDLTVPFARYVAMNGL 519 (854)
Q Consensus 442 p~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D~~G~~l~LR--pDlT~~~aR~~a~~~~ 519 (854)
..-..++.++.+.+++.|.++||.||.||+++... ++...++|.+ |..|+.+.|| |+++. +.++ .+
T Consensus 122 ~~~~~~rs~i~~~ir~~f~~~gF~EV~TPil~~~~------~e~~~~~f~~-~~~g~~~~L~~Spel~~---~~l~-~g- 189 (422)
T 1n9w_A 122 RAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAG------AEGGSGLFGV-DYFEKRAYLAQSPQLYK---QIMV-GV- 189 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECCCC-----------------------------------CHHHH---HHHH-HH-
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEeC------CCCCceeEEE-eeCCCcEEeeeCHHHHH---HHHh-hC-
Confidence 44568889999999999999999999999998642 1222357777 5667888999 77763 4444 33
Q ss_pred cchhhhhhhhhhcccCCCCcccc-ccccccccccccccccCCChhhHHHHHHHhhhc
Q 003041 520 TSFKRHQIAKVYRRDNPSKGRYR-EFYQCDFDIAGQYERMGPDFEVVKILTELLNEL 575 (854)
Q Consensus 520 ~p~K~y~ig~VfR~e~p~~Gr~R-Ef~Q~d~eiig~~~~~~aDaEvI~l~~eil~~L 575 (854)
..|+|++|+|||+|+++.+|.+ ||+|+++|..+..+ ..|++.++.++++.+
T Consensus 190 -~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~d----~~dlm~l~e~ll~~l 241 (422)
T 1n9w_A 190 -FERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIAD----EEDLMRLEEALLAEM 241 (422)
T ss_dssp -HSEEEEEEEC-------------CCEEEEEEEESCSS----HHHHHHHHHHHHHHH
T ss_pred -CCceeEEeCceECCCCCCCcccceeEEeeeeeeCCCC----HHHHHHHHHHHHHHH
Confidence 5699999999999999888888 99999999999622 357777777777664
No 52
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=98.81 E-value=7.8e-10 Score=119.78 Aligned_cols=148 Identities=15% Similarity=0.144 Sum_probs=117.6
Q ss_pred ccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCC---chhhhhhhhc----------------
Q 003041 435 KGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQ---------------- 495 (854)
Q Consensus 435 ~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~---~k~~y~~~D~---------------- 495 (854)
+|++-+-+....+++.+++.+++ -..+||++|.||.+.+.++|.+ +|.+ .++||....-
T Consensus 54 ~g~y~~~g~~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e~-SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~~~~ 131 (346)
T 3mf2_A 54 DGVYARTALYESIVERLAALITS-HREAGTEALRFPPVMSRAQLEK-SGYLKSFPNLLGCVCGLHGTEREINAAVSRFDA 131 (346)
T ss_dssp TTEEEEEHHHHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHHHHH-TTHHHHCGGGCEEEEEECSCHHHHHHHHHHHHT
T ss_pred CceEEecchHHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHHHHh-cCCcccChhhcceeecccccchhhhhhhhhhcc
Confidence 56677778899999999999999 8899999999999999999865 6764 3567764321
Q ss_pred --------cCCceeeecccccchhhhhhhc---cccchhhhhhhhhhcccCC-CCccccccccccccccccccccCCCh-
Q 003041 496 --------GGELCSLRYDLTVPFARYVAMN---GLTSFKRHQIAKVYRRDNP-SKGRYREFYQCDFDIAGQYERMGPDF- 562 (854)
Q Consensus 496 --------~G~~l~LRpDlT~~~aR~~a~~---~~~p~K~y~ig~VfR~e~p-~~Gr~REf~Q~d~eiig~~~~~~aDa- 562 (854)
.+..+.|.|..++|+.-++... ...|+|+..+|+|||+|.. +..|.|||+|.++.+|+.++....+.
T Consensus 132 ~~~~~~~l~~~d~~LiPtacvpl~~~~~~eg~i~~~plr~~~~g~CFR~EaS~GL~RvhqF~kvE~v~~~tpEqs~~e~e 211 (346)
T 3mf2_A 132 GGDWTTSLSPADLVLSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREYVCIGTPDDVSDFRE 211 (346)
T ss_dssp TSCGGGGEEEEEEEECSSSSTTHHHHHHTTCSCCTTCEEEEEEEEEECCCCCSSTTSCSEEEEEEEEEEESHHHHHHHHH
T ss_pred ccccccccCCCCEEEcccccHHHHHHHccCCcccccCeEEEEECCccCCcCCCCCeeeeeeEEEEEEEEeCHHHHHHHHH
Confidence 1357999999999999998843 2347888889999999975 33499999999999999876533332
Q ss_pred hhHHHHHHHhhhcCCCcceeeec
Q 003041 563 EVVKILTELLNELDIGDYEIKLN 585 (854)
Q Consensus 563 EvI~l~~eil~~Lgl~~~~i~Ln 585 (854)
+++..+.++++.||+ +|.+.+.
T Consensus 212 ~l~~~ae~il~~LgL-pyrv~~~ 233 (346)
T 3mf2_A 212 RWMVRAQAIARDLGL-TFRVDYA 233 (346)
T ss_dssp HHHHHHHHHHHHTTC-CCEEEEC
T ss_pred HHHHHHHHHHHHCCC-CEEEEEc
Confidence 568899999999999 5766654
No 53
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=98.79 E-value=1.3e-09 Score=123.76 Aligned_cols=117 Identities=17% Similarity=0.214 Sum_probs=92.7
Q ss_pred HHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhhhccCCceeee--cccccchhhhhhhcc
Q 003041 441 AKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLR--YDLTVPFARYVAMNG 518 (854)
Q Consensus 441 lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D~~G~~l~LR--pDlT~~~aR~~a~~~ 518 (854)
...-..++.++.+.+++.|.++||.||+||+|+.. .++...++|.+ |..|+.+.|| |+++... ++.
T Consensus 131 ~~~~~~~rs~i~~~ir~~f~~~gF~eVeTP~l~~~------~~e~~~~~f~~-~~~~~~~~Lr~Spel~~~~---~~~-- 198 (434)
T 1x54_A 131 ASAIMKVKETLIMAAREWLLKDGWHEVFPPILVTG------AVEGGATLFKL-KYFDKYAYLSQSAQLYLEA---AIF-- 198 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESC------CSSCGGGCCEE-EETTEEEEECSCSHHHHHH---HHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEeCcEEEee------cCCCCceeEEE-eecCCcEEeccChHHHHHH---Hhc--
Confidence 34566888999999999999999999999999853 23334567777 5678889999 7776332 222
Q ss_pred ccchhhhhhhhhhcccCCCCcccc-ccccccccccccccccCCChhhHHHHHHHhhhc
Q 003041 519 LTSFKRHQIAKVYRRDNPSKGRYR-EFYQCDFDIAGQYERMGPDFEVVKILTELLNEL 575 (854)
Q Consensus 519 ~~p~K~y~ig~VfR~e~p~~Gr~R-Ef~Q~d~eiig~~~~~~aDaEvI~l~~eil~~L 575 (854)
.+.|+|++|+|||+|+++.+|.+ ||+|+++|..+.. +.|++.++.++++.+
T Consensus 199 -g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~-----~~dlm~~~e~ll~~l 250 (434)
T 1x54_A 199 -GLEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMD-----LWDIMKVEEELVSYM 250 (434)
T ss_dssp -HHSEEEEEEEEECCCCCCCSSCCSEEEEEEEEEETCC-----HHHHHHHHHHHHHHH
T ss_pred -CccceEEEecceecCCCCCcccccEEEEeeEEEcCCC-----HHHHHHHHHHHHHHH
Confidence 27799999999999999888888 9999999999862 468888887777765
No 54
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=98.76 E-value=1.7e-09 Score=122.34 Aligned_cols=116 Identities=16% Similarity=0.189 Sum_probs=91.0
Q ss_pred HhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhhhccCCceeee--cccccchhhhhhhccc
Q 003041 442 KEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLR--YDLTVPFARYVAMNGL 519 (854)
Q Consensus 442 p~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D~~G~~l~LR--pDlT~~~aR~~a~~~~ 519 (854)
..-..++.++.+.+++.|..+||.||.||+|+.. .++...++|.+ +..|+.+.|| |+++ .-| ++..
T Consensus 131 ~~~~~~rs~i~~~ir~ff~~~gF~eV~TP~l~~~------~~e~~~~~f~~-~~~~~~~~L~~Spql~--~~~-~~~g-- 198 (429)
T 1wyd_A 131 QAVIKIQSLALKAFRETLYKEGFIEIFTPKIIAS------ATEGGAQLFPV-IYFGKEAFLAQSPQLY--KEL-MAGV-- 198 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESS------CSSTTCCCCEE-EETTEEEEECSCCHHH--HHH-HHHH--
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCEEEECCEEEee------CCCCCceeEEE-ecCCceEEecCCcHHH--HHH-HHhC--
Confidence 3456888999999999999999999999999853 22333457776 5677889999 7765 344 4432
Q ss_pred cchhhhhhhhhhcccCCCCcccc-ccccccccccccccccCCChhhHHHHHHHhhhc
Q 003041 520 TSFKRHQIAKVYRRDNPSKGRYR-EFYQCDFDIAGQYERMGPDFEVVKILTELLNEL 575 (854)
Q Consensus 520 ~p~K~y~ig~VfR~e~p~~Gr~R-Ef~Q~d~eiig~~~~~~aDaEvI~l~~eil~~L 575 (854)
+.|+|++|+|||+|+++.+|.+ ||+|+++|..+.. ..|++.++.++++.+
T Consensus 199 -~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~-----~~dlm~~~e~ll~~l 249 (429)
T 1wyd_A 199 -VERVFEVAPAWRAEESDTPFHLAEFISMDVEMAFAD-----YNDVMQLLEKILHNI 249 (429)
T ss_dssp -HSEEEEEEEEECCCCCCSSSCCSEEEEEEEEEETCC-----HHHHHHHHHHHHHHH
T ss_pred -cCceEEEcccccccCCccccccceeeEeeeeecCCC-----HHHHHHHHHHHHHHH
Confidence 6799999999999999888888 9999999999862 467777777777664
No 55
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=98.61 E-value=1.2e-08 Score=117.17 Aligned_cols=116 Identities=15% Similarity=0.175 Sum_probs=85.3
Q ss_pred HhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhhhccCCceeee--cccccchhhhhhhccc
Q 003041 442 KEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLR--YDLTVPFARYVAMNGL 519 (854)
Q Consensus 442 p~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D~~G~~l~LR--pDlT~~~aR~~a~~~~ 519 (854)
-.-.++|.++...+++.|..+||.||.||+|+..+ .+. ..++|.+ +..|+.+.|| |++-. -+.++.
T Consensus 175 ~~~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~-----~~~-ga~~f~~-~~~~~~~~L~~Spql~~--k~l~~~--- 242 (487)
T 1eov_A 175 QAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAP-----SEG-GSSVFEV-TYFKGKAYLAQSPQFNK--QQLIVA--- 242 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC-----SSS-SSCCCEE-EETTEEEEECSCTHHHH--HHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEec-----CCC-Cccccee-ccCCccEEcccChHHHH--HHHHhc---
Confidence 44568889999999999999999999999998643 121 2346766 3567889999 77732 233332
Q ss_pred cchhhhhhhhhhcccCCCCcccc-ccccccccc-cccccccCCChhhHHHHHHHhhh
Q 003041 520 TSFKRHQIAKVYRRDNPSKGRYR-EFYQCDFDI-AGQYERMGPDFEVVKILTELLNE 574 (854)
Q Consensus 520 ~p~K~y~ig~VfR~e~p~~Gr~R-Ef~Q~d~ei-ig~~~~~~aDaEvI~l~~eil~~ 574 (854)
.+-|+|+||++||+|+++.+|.+ ||+|+|+|+ |+.. ..|++.++.++++.
T Consensus 243 g~~rvy~ig~~FR~E~~~~~Rh~pEFt~le~e~af~~~-----~~dlm~l~E~ll~~ 294 (487)
T 1eov_A 243 DFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEH-----YHEVLDTLSELFVF 294 (487)
T ss_dssp TCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSSC-----THHHHHHHHHHHHH
T ss_pred CCCceEEEeccEecCCCCCCccchhhhhhhhhhhhhcC-----HHHHHHHHHHHHHH
Confidence 25699999999999999888988 999999997 7641 13555555555443
No 56
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=98.26 E-value=2.7e-07 Score=106.07 Aligned_cols=116 Identities=16% Similarity=0.170 Sum_probs=84.2
Q ss_pred hHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhh-hccCCceeeecccccch---hhhhhhcc
Q 003041 443 EQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLA-DQGGELCSLRYDLTVPF---ARYVAMNG 518 (854)
Q Consensus 443 ~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~-D~~G~~l~LRpDlT~~~---aR~~a~~~ 518 (854)
.-.++|.++...+++.|..+||.||.||+|.+.. .|. ..++|.+. |..|+.+.|| +.|- =|.++
T Consensus 172 ~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~-----~Ga-~a~~F~~~~~~~~~~~yLr---~SpqLylk~l~v--- 239 (493)
T 3a74_A 172 KTFITRSLIIQSMRRYLDSHGYLEVETPMMHAVA-----GGA-AARPFITHHNALDMTLYMR---IAIELHLKRLIV--- 239 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC-----CSS-SSCCCEEEETTTTEEEEEC---SCSHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHhCCeEEEECCeEEecC-----CCC-cccceEecccCCCceeEEe---cCHHHHHHHHhh---
Confidence 4568889999999999999999999999998531 222 22456553 5567788888 2332 12222
Q ss_pred ccchhhhhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhhhc
Q 003041 519 LTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNEL 575 (854)
Q Consensus 519 ~~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~L 575 (854)
.-.-|+|+||++||+|.++..|..||+|+++|..+.. ..+++.++.++++.+
T Consensus 240 ~G~~rVyeig~~FR~E~~~~rH~pEFT~lE~e~af~d-----~~dlm~l~E~ll~~l 291 (493)
T 3a74_A 240 GGLEKVYEIGRVFRNEGISTRHNPEFTMLELYEAYAD-----FRDIMKLTENLIAHI 291 (493)
T ss_dssp TTCCEEEEEEEEECCCCCBTTBCSEEEEEEEEEETCC-----HHHHHHHHHHHHHHH
T ss_pred cccCceEEECccccCCCCCcccCCceeEEEEEecCCC-----HHHHHHHHHHHHHHH
Confidence 1256999999999999998899999999999988752 346666666655543
No 57
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=98.19 E-value=1.3e-06 Score=99.82 Aligned_cols=134 Identities=21% Similarity=0.150 Sum_probs=96.0
Q ss_pred HHhHHHHHHHHHhcCccccCc-chhHhHHhhhhccC----C---Cchhhhhhhhc-------------------------
Q 003041 449 EKAFSIITEVFKRHGAMALDT-PVFEMRETLMGKYG----E---DSKLIYDLADQ------------------------- 495 (854)
Q Consensus 449 ~~i~~~l~~if~~~G~~eI~t-P~le~~e~~~~~~g----~---~~k~~y~~~D~------------------------- 495 (854)
.++.+.++++|...||.|+.+ |.+++...-..... + +....|.+.++
T Consensus 228 ~~v~~~Ir~if~~mGF~Ev~t~~~ves~~~NFDaLn~P~dHPaR~~~Dtfyi~~P~~~~~~~e~~~~~v~~~He~g~~~s 307 (508)
T 3l4g_A 228 LKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHSQGGYGS 307 (508)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCCSEEEHHHHTGGGTCCSSSTTSSTTTSCBBSTTCBCSCCCHHHHHHHHHHHHTCBTTB
T ss_pred HHHHHHHHHHHHHCcCeEeccCCccccHHHHHHhcCCCCCCcccccCceEEEcCccccccccHHHHHhhhhhhhccccCC
Confidence 566777999999999999875 66665321111111 1 11122444332
Q ss_pred ----------cCCceeeecccccchhhhhhhc----cccchhhhhhhhhhcccCCCCccccccccccccccccccccCCC
Q 003041 496 ----------GGELCSLRYDLTVPFARYVAMN----GLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPD 561 (854)
Q Consensus 496 ----------~G~~l~LRpDlT~~~aR~~a~~----~~~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aD 561 (854)
.++..+||+.+|+..+|.+..| +..|+|+|++|+|||+|.....|..+|+|++.-+++.. ..-
T Consensus 308 ~g~~~~~~~~~~~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d~~DatHlpeFhQlegl~~~~~---v~f 384 (508)
T 3l4g_A 308 QGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLDATHLAEFHQIEGVVADHG---LTL 384 (508)
T ss_dssp CCCCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSCCCSSSCSEEEEEEEEEEEES---CCH
T ss_pred ccccccccccccccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEecCCCCCCcCCeEEEEEEEEECCC---CCH
Confidence 1257899999999999999864 34799999999999999888889999999998877642 234
Q ss_pred hhhHHHHHHHhhhcCCCcceeeec
Q 003041 562 FEVVKILTELLNELDIGDYEIKLN 585 (854)
Q Consensus 562 aEvI~l~~eil~~Lgl~~~~i~Ln 585 (854)
+++..++..+++.||+..+.++-.
T Consensus 385 ~dLKg~Le~~l~~lG~~~~rfrps 408 (508)
T 3l4g_A 385 GHLMGVLREFFTKLGITQLRFKPA 408 (508)
T ss_dssp HHHHHHHHHHHHTTTCCCCEEEEC
T ss_pred HHHHHHHHHHHHHcCCcceEeecc
Confidence 688889999999998755555433
No 58
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=97.99 E-value=2e-06 Score=98.96 Aligned_cols=118 Identities=18% Similarity=0.209 Sum_probs=79.9
Q ss_pred hHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhh-hccCCceeeecccccchhhhhhhccccc
Q 003041 443 EQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLA-DQGGELCSLRYDLTVPFARYVAMNGLTS 521 (854)
Q Consensus 443 ~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~-D~~G~~l~LRpDlT~~~aR~~a~~~~~p 521 (854)
.-.++|.+|...+++.|..+||.||+||+|.+.. .|. ..++|.+. +.-|..+.||----...=|.++. -.
T Consensus 181 ~~~r~Rs~i~~~iR~f~~~~gFlEVeTPiL~~~~-----~Ga-~ar~F~t~~~~~~~~~yL~~SpqLylk~L~v~---G~ 251 (504)
T 1e1o_A 181 QTFVVRSKILAAIRQFMVARGFMEVETPMMQVIP-----GGA-SARPFITHHNALDLDMYLRIAPELYLKRLVVG---GF 251 (504)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEECCCCSEESSC-----CSS-CCCCCEEEETTTTEEEEECSCSHHHHHHHHHH---TC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeEEecC-----CCC-cccceEeccCCCCceEEeccCHHHHHHHHhhc---CC
Confidence 4568888999999999999999999999997431 222 12345432 33466777872111111122221 24
Q ss_pred hhhhhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhhh
Q 003041 522 FKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNE 574 (854)
Q Consensus 522 ~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~ 574 (854)
-|+|+||++||+|..+..|..||+|+++|..... ..+++.++.++++.
T Consensus 252 ~rVyeIg~~FR~E~~~~rH~pEFt~lE~e~af~d-----~~dlm~l~E~li~~ 299 (504)
T 1e1o_A 252 ERVFEINRNFRNEGISVRHNPEFTMMELYMAYAD-----YHDLIELTESLFRT 299 (504)
T ss_dssp CEEEEEEEEECCCCCCC-CCSEEEEEEEEEESCC-----HHHHHHHHHHHHHH
T ss_pred CcEEEEcccccCCCCCccccCceeeeeeeecCCC-----HHHHHHHHHHHHHH
Confidence 6999999999999988889999999999988752 23566665555544
No 59
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=97.97 E-value=2.4e-06 Score=94.00 Aligned_cols=118 Identities=13% Similarity=0.185 Sum_probs=77.7
Q ss_pred HHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhhhccC------Cceeeecccccchhhhhhhc
Q 003041 444 QMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGG------ELCSLRYDLTVPFARYVAMN 517 (854)
Q Consensus 444 ~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D~~G------~~l~LRpDlT~~~aR~~a~~ 517 (854)
-.++|.++...+++.|..+||.||+||+|.+.. .++...+.|++ |-.| ..+-|+-.--...-|.++..
T Consensus 35 ~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~-----~~~a~~~~F~~-~~~~~~~~~~~~~yL~~Spql~~k~l~~~g 108 (345)
T 3a5y_A 35 NLLKRAAIMAEIRRFFADRGVLEVETPCMSQAT-----VTDIHLVPFET-RFVGPGHSQGMNLWLMTSPEYHMKRLLVAG 108 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC-----CCCTTCCCCEE-EECCSTTSCCEEEEECSCSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCEEEecC-----CCCCccceEEE-EecCcccccCCCEeecCCHHHHHHHHHHcC
Confidence 458888999999999999999999999987532 11111223433 2111 23334422111223344432
Q ss_pred cccchhhhhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhhhc
Q 003041 518 GLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNEL 575 (854)
Q Consensus 518 ~~~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~L 575 (854)
--|+|+||+|||+|.....|..||+|+++|..+.. ..+++.++.++++.+
T Consensus 109 ---~~rvyqIg~~FR~E~~~~rH~pEFt~lE~e~af~d-----~~d~m~~~E~li~~v 158 (345)
T 3a5y_A 109 ---CGPVFQLCRSFRNEEMGRYHNPEFTMLEWYRPHYD-----MYRLMNEVDDLLQQV 158 (345)
T ss_dssp ---CCSEEEEEEEECCCCCBTTBCSEEEEEEEEEETCC-----HHHHHHHHHHHHHHH
T ss_pred ---CCcEEEEEcceeCCCCcccccchhheeeeeeeCCC-----HHHHHHHHHHHHHHH
Confidence 24999999999999887778999999999988752 236666666666653
No 60
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=97.89 E-value=4.7e-06 Score=95.66 Aligned_cols=82 Identities=12% Similarity=0.208 Sum_probs=64.4
Q ss_pred ceeeecccccchhhhhhh---ccccchhhhhhhhhhcccCC-CCccccccccccccccccccccCCChhhHHHHHHHhhh
Q 003041 499 LCSLRYDLTVPFARYVAM---NGLTSFKRHQIAKVYRRDNP-SKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNE 574 (854)
Q Consensus 499 ~l~LRpDlT~~~aR~~a~---~~~~p~K~y~ig~VfR~e~p-~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~ 574 (854)
..+||+.+++++...+.. ++..|+|+|++|+|||++.+ +.++++||+|+++.++|... .-.++..++..+++.
T Consensus 180 ~svLRTsLlPgLL~~lr~N~~r~~~pvrLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~v---df~dLKgilE~LL~~ 256 (534)
T 2du3_A 180 TLTLRSHMTTGWFITLSHIADKLPLPIKLFSIDRCFRREQGEDATRLYTYFSASCVLVDEEL---SVDDGKAVAEALLRQ 256 (534)
T ss_dssp EEEECSSHHHHHHHHHHTTTTTSCSSEEEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSC---CHHHHHHHHHHHHGG
T ss_pred ccccCccchhhHHHHHHHHHhCCCCCeeEEEEeeEEecCccccccccceeeEEEEEEECCCC---CHHHHHHHHHHHHHH
Confidence 478999999966555543 45678999999999998776 67788999999999999621 235788889999999
Q ss_pred cCCCcceee
Q 003041 575 LDIGDYEIK 583 (854)
Q Consensus 575 Lgl~~~~i~ 583 (854)
||+.++.++
T Consensus 257 LGi~~~r~~ 265 (534)
T 2du3_A 257 FGFENFRFR 265 (534)
T ss_dssp GTCCEEEEE
T ss_pred cCCCeEEEE
Confidence 987545444
No 61
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=97.81 E-value=1.4e-05 Score=87.90 Aligned_cols=124 Identities=18% Similarity=0.126 Sum_probs=89.6
Q ss_pred HHhHHHHHHHHHhcCccccCcchhHhHHh-hhhc-cCCC-----chhhhhhhhccC-----------Cceeeecccccch
Q 003041 449 EKAFSIITEVFKRHGAMALDTPVFEMRET-LMGK-YGED-----SKLIYDLADQGG-----------ELCSLRYDLTVPF 510 (854)
Q Consensus 449 ~~i~~~l~~if~~~G~~eI~tP~le~~e~-~~~~-~g~~-----~k~~y~~~D~~G-----------~~l~LRpDlT~~~ 510 (854)
.++.+.|+++|...||.|+.+|.+++... |..- ...+ ....|.+.++.. +..+||..+++..
T Consensus 104 ~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~s~~~~~~~~~~~~~~vLRt~tsp~l 183 (350)
T 1b7y_A 104 TLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPMQ 183 (350)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCCCBCTTSCBCCSCEEECSSSTHHH
T ss_pred HHHHHHHHHHHHHCCCEEEECcchhcchhHHHhhCCCCCCccccccccEEEcCccccccccccccccccceeeccchHHH
Confidence 55667799999999999999999977432 2110 1111 122355544322 6678999999999
Q ss_pred hhhhhhccccchhhhhhhhhhcccCCCCccccccccccccccccccccCCC-hhhHHHHHHHhhhc-CC
Q 003041 511 ARYVAMNGLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPD-FEVVKILTELLNEL-DI 577 (854)
Q Consensus 511 aR~~a~~~~~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aD-aEvI~l~~eil~~L-gl 577 (854)
+|.++.+ ..|+|+|++|+|||++.....++.||+|++.-++|.. .+ .++..++..+++.+ |.
T Consensus 184 lr~l~~~-~~piriFEiGrVFR~d~~d~tH~pEF~qlegl~~g~~----v~f~dLKg~le~ll~~lfG~ 247 (350)
T 1b7y_A 184 VRYMVAH-TPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVGEG----IAMAHLKGAIYELAQALFGP 247 (350)
T ss_dssp HHHHHHC-CSSEEEEEEEEEECCCCCCSSCCSEEEEEEEEEEETT----CCHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHhc-CCCeeEEEeeeEEECCCCCCCCCChhHEEEEEEECCC----CCHHHHHHHHHHHHHhhcCC
Confidence 9999874 5689999999999987533447789999999999862 23 46667788888876 75
No 62
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=97.69 E-value=1.4e-05 Score=90.65 Aligned_cols=116 Identities=20% Similarity=0.248 Sum_probs=78.0
Q ss_pred HHhHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhhhccCCceeee--cccccchhhhhhhcc
Q 003041 441 AKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLR--YDLTVPFARYVAMNG 518 (854)
Q Consensus 441 lp~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D~~G~~l~LR--pDlT~~~aR~~a~~~ 518 (854)
...-.++|.++...+++.|..+||.||+||+|..... -| ..++|.+ +.-|+.+.|| |.+-.. +.++
T Consensus 128 ~~~~~r~Rs~i~~~iR~ff~~~gFlEVeTPiL~~s~~----eG--~~~~F~~-~~~g~~~~L~~SpqLylq--~l~~--- 195 (435)
T 2xgt_A 128 AAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQV----EG--GSTLFNL-DYFGEQSFLTQSSQLYLE--TCIP--- 195 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCS----SC--TTSCCEE-EETTEEEEECSCSHHHHH--HHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECCeEeeccC----CC--chhceee-ccCCcccccCCChHHHHH--Hhhh---
Confidence 3455688899999999999999999999999865331 11 1124543 3345666676 443222 2221
Q ss_pred ccchhhhhhhhhhcccCCCCcccc-ccccccccccccccccCCChhhHHHHHHHhhh
Q 003041 519 LTSFKRHQIAKVYRRDNPSKGRYR-EFYQCDFDIAGQYERMGPDFEVVKILTELLNE 574 (854)
Q Consensus 519 ~~p~K~y~ig~VfR~e~p~~Gr~R-Ef~Q~d~eiig~~~~~~aDaEvI~l~~eil~~ 574 (854)
..-|+|+||++||+|.....|.. ||+|+++|..+.+ ..+++.++.++++.
T Consensus 196 -g~~rvfeIg~~FR~E~~~t~RH~~EFT~lE~e~af~d-----~~d~m~~~E~li~~ 246 (435)
T 2xgt_A 196 -TLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFIT-----LDDLMEKIEELVCD 246 (435)
T ss_dssp -HHCSEEEEEEEECCCSSCCTTCCSEEEEEEEEEESCC-----HHHHHHHHHHHHHH
T ss_pred -ccCceEEEecceecCCCCccccccceeEEEEEEecCC-----HHHHHHHHHHHHHH
Confidence 14599999999999987766655 9999999988752 23555555555544
No 63
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=97.62 E-value=2.3e-05 Score=88.72 Aligned_cols=102 Identities=18% Similarity=0.225 Sum_probs=71.3
Q ss_pred hHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhhhccCCceeeecccccchhhhhhhccccch
Q 003041 443 EQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGLTSF 522 (854)
Q Consensus 443 ~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D~~G~~l~LRpDlT~~~aR~~a~~~~~p~ 522 (854)
.-.++|..+...+++.|..+||.||.||++..... ..| .++|.+ +.-|+.+.|+..--...-|.++. -.-
T Consensus 135 ~~~~~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~~---eg~---~~~f~~-~~~~~~~yL~~Spql~~q~l~~~---g~~ 204 (438)
T 3nem_A 135 AIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATAT---EGG---TELFPM-KYFEEDAFLAQSPQLYKQIMMAS---GLD 204 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCS---SCS---SSCCEE-EETTEEEEECSCSHHHHHHGGGT---TCC
T ss_pred HHHHHHHHHHHHHHHHHHHCCcEEEeCCEEecCCC---CCC---ccceeE-eeCCccEEEecChHHHHHHHHhc---CCC
Confidence 45678888999999999999999999999975431 112 224544 23356667763332233333332 245
Q ss_pred hhhhhhhhhcccCCCCcc-cccccccccccccc
Q 003041 523 KRHQIAKVYRRDNPSKGR-YREFYQCDFDIAGQ 554 (854)
Q Consensus 523 K~y~ig~VfR~e~p~~Gr-~REf~Q~d~eiig~ 554 (854)
|+|+||++||+|..+..| .-||+|+++|....
T Consensus 205 rvf~i~~~FR~E~~~t~RH~pEFt~le~e~a~~ 237 (438)
T 3nem_A 205 RVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFI 237 (438)
T ss_dssp EEEEEEEEECCCSSCCTTCCSEEEEEEEEEESC
T ss_pred ceEEEcceEECCCCCCcccccceeeeeeeeccC
Confidence 999999999999887654 46999999998775
No 64
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=97.58 E-value=4.2e-05 Score=87.79 Aligned_cols=82 Identities=13% Similarity=0.210 Sum_probs=61.3
Q ss_pred ceeeecccccchhhhhh---hccccchhhhhhhhhhcccCC-CCccccccccccccccccccccCCChhhHHHHHHHhhh
Q 003041 499 LCSLRYDLTVPFARYVA---MNGLTSFKRHQIAKVYRRDNP-SKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNE 574 (854)
Q Consensus 499 ~l~LRpDlT~~~aR~~a---~~~~~p~K~y~ig~VfR~e~p-~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~ 574 (854)
..+||+.+++++...+. .++..|+|+|++|+|||.+.+ ...+++||+|++.-++|.. ..-.++..++..+++.
T Consensus 192 ~svLRTsLlPGLL~~vr~N~~r~~~pvrlFEiGrVFr~D~~~d~th~~ef~qLaglv~G~~---vdF~DLKG~Le~ll~~ 268 (549)
T 2du7_A 192 TLTLRSHMTSGWFITLSSLIKKRKLPLKLFSIDRCFRREQREDRSHLMSYHSASCVVVGED---VSVDDGKVVAEGLLAQ 268 (549)
T ss_dssp EEECCSTTHHHHHHHHHTTTTTSCSSEEEEEEEEECCCCSSCSSSCCSCEEEEEEEEECTT---CCHHHHHHHHHHHHGG
T ss_pred ccccccccchhHHHHHHHHHhcCCCCeEEEEEeeEEecCCcccCcCCCcceEEEEEEECCC---CCHHHHHHHHHHHHHH
Confidence 56899999995554444 345679999999999997653 4457899999999999962 1235777888899998
Q ss_pred cCCCcceee
Q 003041 575 LDIGDYEIK 583 (854)
Q Consensus 575 Lgl~~~~i~ 583 (854)
||+..+.++
T Consensus 269 LGi~~~rfr 277 (549)
T 2du7_A 269 FGFTKFKFK 277 (549)
T ss_dssp GTCCCCCCE
T ss_pred cCCCeEEEE
Confidence 886444443
No 65
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=97.46 E-value=8.2e-05 Score=80.11 Aligned_cols=122 Identities=16% Similarity=0.108 Sum_probs=85.9
Q ss_pred HHHhHHHHHHHHHhcCccccCcchhHhHHh-hhhc-cCCCc-----hhhhhhhhccCCceeeecccccchhhhhhhcc-c
Q 003041 448 REKAFSIITEVFKRHGAMALDTPVFEMRET-LMGK-YGEDS-----KLIYDLADQGGELCSLRYDLTVPFARYVAMNG-L 519 (854)
Q Consensus 448 ~~~i~~~l~~if~~~G~~eI~tP~le~~e~-~~~~-~g~~~-----k~~y~~~D~~G~~l~LRpDlT~~~aR~~a~~~-~ 519 (854)
.+++.+.++++|...||.|+.+|.+.+... |... ...+. ...+.+. +..+||+.+++.+.|.++.|. .
T Consensus 55 ~~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~nf~~l~~~~~~par~~~d~~~l~----e~~vLRtsl~p~ll~~l~~N~~~ 130 (294)
T 2rhq_A 55 LTRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYIT----DEILMRTHTSPVQARTMEKRNGQ 130 (294)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBSS----SSEEECSSSHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHCCCEEEcCcceeeehhhHHhhCCCCCccccccCCcEEEc----CcceeeccCHHHHHHHHHhcCCC
Confidence 355667799999999999999998877532 2111 11110 1134443 457899999999999999873 5
Q ss_pred cchhhhhhhhhhcccCCCCccccccccccccccccccccCCC-hhhHHHHHHHhhhc-CC
Q 003041 520 TSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPD-FEVVKILTELLNEL-DI 577 (854)
Q Consensus 520 ~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aD-aEvI~l~~eil~~L-gl 577 (854)
.+.|+|++|+|||++.....++.||+|++.-+.|.. .| .++..++..+++.+ |+
T Consensus 131 ~~~riFEiG~Vfr~d~~d~~h~~Ef~~Le~~~~g~~----~df~dlKg~le~ll~~l~g~ 186 (294)
T 2rhq_A 131 GPVKIICPGKVYRRDSDDATHSHQFTQIEGLVVDKN----IKMSDLKGTLELVAKKLFGA 186 (294)
T ss_dssp SCEEEEEEEEEECCCCCBTTBCSEEEEEEEEEEESS----CCHHHHHHHHHHHHHHHHCT
T ss_pred CCccEEEEcCEEecCCCCCCCCChhhEEEEEEECCC----CCHHHHHHHHHHHHHHHhCC
Confidence 689999999999975422335569999998888852 34 35556777777776 75
No 66
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=97.23 E-value=0.00011 Score=83.58 Aligned_cols=101 Identities=11% Similarity=0.155 Sum_probs=66.8
Q ss_pred hHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhhhccCCceeeecccccchhhhhhhccccch
Q 003041 443 EQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGLTSF 522 (854)
Q Consensus 443 ~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D~~G~~l~LRpDlT~~~aR~~a~~~~~p~ 522 (854)
.-.++|.++...+++.|..+||.||+||+|..... ..|. ++|.+ |--|+.+.|+-.-....-+.++ .--
T Consensus 154 ~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~s~~---eGg~---~~f~~-~~~~~~~~L~~SpqL~lq~l~~----g~~ 222 (456)
T 3m4p_A 154 QVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQC---EGGS---TLFKL-QYFNEPAYLTQSSQLYLESVIA----SLG 222 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEC---------C---CCCEE-EETTEEEEECSCCHHHHHTTHH----HHS
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEeCCeeecCCC---CCcc---ccccc-cccCCCcccccCHHHHHHHHHh----ccC
Confidence 45688889999999999999999999999854321 1111 23432 2334555555433222223332 146
Q ss_pred hhhhhhhhhcccCCCCc-ccccccccccccccc
Q 003041 523 KRHQIAKVYRRDNPSKG-RYREFYQCDFDIAGQ 554 (854)
Q Consensus 523 K~y~ig~VfR~e~p~~G-r~REf~Q~d~eiig~ 554 (854)
|+|+||++||+|..... |.-||+|+++|....
T Consensus 223 rVyeig~~FR~E~~~t~rH~pEFtmlE~e~af~ 255 (456)
T 3m4p_A 223 KSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFI 255 (456)
T ss_dssp SEEEEEEEECCCSCCCSSCCSEEEEEEEEEESC
T ss_pred cEEEEEhheecCCCCCCcchHHHHHhHHHHhcC
Confidence 99999999999976544 456999999998765
No 67
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=97.17 E-value=0.00017 Score=84.41 Aligned_cols=102 Identities=18% Similarity=0.287 Sum_probs=65.6
Q ss_pred hHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhh--hccCCceeeecccccchhhhhhhcccc
Q 003041 443 EQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLA--DQGGELCSLRYDLTVPFARYVAMNGLT 520 (854)
Q Consensus 443 ~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~--D~~G~~l~LRpDlT~~~aR~~a~~~~~ 520 (854)
.-.++|.++...+++.|..+||.||+||+|.... .+.... |.+- ...|..++||----...=|.++. -
T Consensus 142 ~~l~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~s~------~eGAr~-F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~---G 211 (580)
T 1l0w_A 142 ENLRLRHRVIKAIWDFLDREGFVQVETPFLTKST------PEGARD-FLVPYRHEPGLFYALPQSPQLFKQMLMVA---G 211 (580)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCC------SSSSCC-CEEECTTSTTEEEECCSCSHHHHHHHHHT---T
T ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEeCCEEecCC------CCCCCC-ccccccccCCceeECccCHHHHHHHHHHh---c
Confidence 3468888999999999999999999999986321 111111 2211 12355555652111111122221 1
Q ss_pred chhhhhhhhhhcccCCCCcccccccccccccccc
Q 003041 521 SFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQ 554 (854)
Q Consensus 521 p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~ 554 (854)
--|+|+||+|||+|..+.-|.=||+|+|+|.-..
T Consensus 212 ~~rvfqI~~~FR~E~~~~~r~pEFT~lE~e~af~ 245 (580)
T 1l0w_A 212 LDRYFQIARCFRDEDLRADRQPDFTQLDLEMSFV 245 (580)
T ss_dssp CSEEEEEEEEECCCCCCSSCCSEEEEEEEEEESC
T ss_pred cCCeEEEeceeeCCCCCCCcCCCccceeeeecCC
Confidence 3489999999999987665544999999998764
No 68
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=97.15 E-value=0.00024 Score=82.11 Aligned_cols=101 Identities=13% Similarity=0.155 Sum_probs=59.7
Q ss_pred hHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhhhccCCceeeecccccchhhhhhhccccch
Q 003041 443 EQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGLTSF 522 (854)
Q Consensus 443 ~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D~~G~~l~LRpDlT~~~aR~~a~~~~~p~ 522 (854)
.-.++|..+...+++.|..+||.||.||+|..... +...+.|.+ +.-|..+.|+----...-|.++. -.-
T Consensus 242 ~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~------egga~~F~v-~~~~~~~yL~~Spql~~k~ll~~---g~~ 311 (548)
T 3i7f_A 242 AIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSS------EGGSNIFEV-KYFDRKAYLAQSPQLYKQMAIMG---DFR 311 (548)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSBC--------------------------CCBCSCTHHHHHHHHTT---TCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEeCCEEecccC------CCCcceeEE-ecCCCceEeccCHHHHHHHHHhc---CcC
Confidence 34578888999999999999999999999876431 111234543 22233344442221112233331 235
Q ss_pred hhhhhhhhhcccCCCCc-cccccccccccc-cc
Q 003041 523 KRHQIAKVYRRDNPSKG-RYREFYQCDFDI-AG 553 (854)
Q Consensus 523 K~y~ig~VfR~e~p~~G-r~REf~Q~d~ei-ig 553 (854)
|+|+||++||.|..... |.-||+|+++|. |+
T Consensus 312 rVfeI~~~FR~E~~~t~RHl~EFtmlE~e~af~ 344 (548)
T 3i7f_A 312 KVFEVGPVFRAENSNTRRHLTEFEGLDIEMEIV 344 (548)
T ss_dssp EEEEEEEECCCSCCCSSSCCSCEEEEEEEEECS
T ss_pred cEEEEeeeEecCCCCCCCcchhhhchhhhhhhh
Confidence 99999999999976543 557999999995 54
No 69
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=97.14 E-value=0.00018 Score=84.38 Aligned_cols=102 Identities=20% Similarity=0.274 Sum_probs=65.5
Q ss_pred hHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhh--hccCCceeeecccccchhhhhhhcccc
Q 003041 443 EQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLA--DQGGELCSLRYDLTVPFARYVAMNGLT 520 (854)
Q Consensus 443 ~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~--D~~G~~l~LRpDlT~~~aR~~a~~~~~ 520 (854)
.-.++|.++...+++.|..+||.||+||+|.... .+.... |.+- ...|..+.||----...=|.++. -
T Consensus 136 ~~l~~Rs~i~~~iR~fl~~~gFlEVeTPiL~~s~------~eGAr~-F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~---G 205 (585)
T 1c0a_A 136 QRLKTRAKITSLVRRFMDDHGFLDIETPMLTKAT------PEGARD-YLVPSRVHKGKFYALPQSPQLFKQLLMMS---G 205 (585)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCC------SSSSCC-CEEECSSSTTCEEECCSCSHHHHHHHHHT---T
T ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEeCCEEecCC------CCCCcc-ceecccccCCceEeCccCHHHHHHHHHhc---C
Confidence 3468888999999999999999999999986321 111111 2221 12455555652111111122221 1
Q ss_pred chhhhhhhhhhcccCCCCcccccccccccccccc
Q 003041 521 SFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQ 554 (854)
Q Consensus 521 p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~ 554 (854)
--|+|+||++||+|....-|.=||+|+|+|.-..
T Consensus 206 ~~rvfqI~~~FR~E~~~t~r~pEFT~lE~e~af~ 239 (585)
T 1c0a_A 206 FDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFM 239 (585)
T ss_dssp CCEEEEEEEEECCCCCBTTBCSEEEEEEEEEESC
T ss_pred CCceEEEeceeecCCCCCCcCcccceeeeeecCC
Confidence 3489999999999987665544999999998764
No 70
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=97.06 E-value=0.00021 Score=82.73 Aligned_cols=103 Identities=16% Similarity=0.210 Sum_probs=68.7
Q ss_pred hHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhh-hccCCceeeecccccchhhhhhhccccc
Q 003041 443 EQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLA-DQGGELCSLRYDLTVPFARYVAMNGLTS 521 (854)
Q Consensus 443 ~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~-D~~G~~l~LRpDlT~~~aR~~a~~~~~p 521 (854)
.-.++|..+...+++.|..+||.||.||+|.+.. .|.. .+.|... +.-|..+.||-.--...=|.++. --
T Consensus 174 ~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~-----gGa~-a~~F~t~~~~~~~~~yL~~SpqL~lk~liv~---g~ 244 (521)
T 3bju_A 174 QKFIIRSKIITYIRSFLDELGFLEIETPMMNIIP-----GGAV-AKPFITYHNELDMNLYMRIAPELYHKMLVVG---GI 244 (521)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC-----CSSS-CCCCEEEETTTTEEEEECSCSHHHHHHHHHT---TC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCceeeccC-----CCcc-ccceeeecccCCcceEeeCCHHHHHHHHHhc---Cc
Confidence 3467888899999999999999999999996421 1211 1233221 12345566663222222233331 13
Q ss_pred hhhhhhhhhhcccCCCCcccccccccccccccc
Q 003041 522 FKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQ 554 (854)
Q Consensus 522 ~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~ 554 (854)
-|+|+||++||+|....-|.-||+|+++|.-..
T Consensus 245 ~rVyeig~~FR~E~~~trH~pEFtmlE~e~af~ 277 (521)
T 3bju_A 245 DRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYA 277 (521)
T ss_dssp CEEEEEEEEECCSCCBTTBCSEEEEEEEEEETC
T ss_pred CceEEEEcceeCCCCCCccchhhhhhhhhhhcC
Confidence 589999999999987666788999999997764
No 71
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=97.04 E-value=0.00022 Score=82.26 Aligned_cols=103 Identities=17% Similarity=0.158 Sum_probs=66.9
Q ss_pred hHHHHHHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhh-hhccCCceeeecccccchhhhhhhccccc
Q 003041 443 EQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDL-ADQGGELCSLRYDLTVPFARYVAMNGLTS 521 (854)
Q Consensus 443 ~~~~~~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~-~D~~G~~l~LRpDlT~~~aR~~a~~~~~p 521 (854)
.-.++|.++...+++.|..+||.||.||+|.+.. .|.. .+.|.. .+.-|..+.||----...-|.++. -.
T Consensus 202 ~~fr~Rs~i~~~iR~ff~~~gFlEVeTPiL~~~~-----gGA~-a~pF~t~~n~~~~~~yL~~SpqLylk~L~v~---G~ 272 (529)
T 4ex5_A 202 TTFRARTKAIASIRKFMGDADFMEVETPMLHPIP-----GGAA-AKPFVTHHNALDMEMFLRIAPELYLKRLIVG---GF 272 (529)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC-----CSSS-SCCCEEEETTTTEEEEECSCSHHHHHHHHHT---TC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCeeeccC-----CCCc-ccccccccccCCcceecccCHHHHHHHHHhc---CC
Confidence 3468888999999999999999999999996421 1211 122311 111233444542211111233321 13
Q ss_pred hhhhhhhhhhcccCCCCcccccccccccccccc
Q 003041 522 FKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQ 554 (854)
Q Consensus 522 ~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~ 554 (854)
-|+|+||++||+|....-|.-||+|+++|.-..
T Consensus 273 ~rVyeIg~~FR~E~~~~rH~pEFtmlE~e~af~ 305 (529)
T 4ex5_A 273 ERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYT 305 (529)
T ss_dssp SEEEEEEEEECCSCCBTTBCSEEEEEEEEEETC
T ss_pred CcEEEeehheecCCCCCCcccHhHhhhhhhhcC
Confidence 599999999999987666788999999998654
No 72
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=97.02 E-value=0.00037 Score=80.62 Aligned_cols=81 Identities=21% Similarity=0.291 Sum_probs=59.5
Q ss_pred ceeeecccccchhhhhhh---ccccchhhhhhhhhhcccCC-CCccccccccccccccccccccCCC-hhhHHHHHHHhh
Q 003041 499 LCSLRYDLTVPFARYVAM---NGLTSFKRHQIAKVYRRDNP-SKGRYREFYQCDFDIAGQYERMGPD-FEVVKILTELLN 573 (854)
Q Consensus 499 ~l~LRpDlT~~~aR~~a~---~~~~p~K~y~ig~VfR~e~p-~~Gr~REf~Q~d~eiig~~~~~~aD-aEvI~l~~eil~ 573 (854)
.-+||+.+++++...+.. ++..|+|+|++|+|||++.. ...++.||+|.+.=+.|.. .+ .++..++..+++
T Consensus 199 ~sVLRTsLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~----vdF~DLKGvLE~LL~ 274 (648)
T 2odr_B 199 KLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEG----VDINDGKAIAEGLLS 274 (648)
T ss_dssp SEEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTT----CCHHHHHHHHHHHHH
T ss_pred cCcccccchhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEECCC----CCHHHHHHHHHHHHH
Confidence 568999999965554443 45679999999999997653 3346789999999888862 34 466678888888
Q ss_pred hcCCCcceee
Q 003041 574 ELDIGDYEIK 583 (854)
Q Consensus 574 ~Lgl~~~~i~ 583 (854)
.||+..+.++
T Consensus 275 ~LGi~~vrfr 284 (648)
T 2odr_B 275 QFGFTNFKFI 284 (648)
T ss_dssp TTTCCCEEEE
T ss_pred HcCCCeEEEE
Confidence 8886444444
No 73
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=97.01 E-value=0.00038 Score=80.61 Aligned_cols=81 Identities=21% Similarity=0.291 Sum_probs=59.5
Q ss_pred ceeeecccccchhhhhhh---ccccchhhhhhhhhhcccCC-CCccccccccccccccccccccCCC-hhhHHHHHHHhh
Q 003041 499 LCSLRYDLTVPFARYVAM---NGLTSFKRHQIAKVYRRDNP-SKGRYREFYQCDFDIAGQYERMGPD-FEVVKILTELLN 573 (854)
Q Consensus 499 ~l~LRpDlT~~~aR~~a~---~~~~p~K~y~ig~VfR~e~p-~~Gr~REf~Q~d~eiig~~~~~~aD-aEvI~l~~eil~ 573 (854)
.-+||+.+++++...+.. ++..|+|+|++|+|||++.. ...++.||+|.+.=+.|.. .+ .++..++..+++
T Consensus 199 ~sVLRTSLlPGLL~~lr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~----vdF~DLKGvLE~LL~ 274 (665)
T 2odr_A 199 KLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEG----VDINDGKAIAEGLLS 274 (665)
T ss_dssp SEEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTT----CCHHHHHHHHHHHHH
T ss_pred cCcccccchhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEECCC----CCHHHHHHHHHHHHH
Confidence 568999999965554443 45679999999999997653 3346789999999888862 34 466678888888
Q ss_pred hcCCCcceee
Q 003041 574 ELDIGDYEIK 583 (854)
Q Consensus 574 ~Lgl~~~~i~ 583 (854)
.||+..+.++
T Consensus 275 ~LGi~~vrfr 284 (665)
T 2odr_A 275 QFGFTNFKFI 284 (665)
T ss_dssp TTTCCCEEEE
T ss_pred HcCCCeEEEE
Confidence 8886444444
No 74
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=97.00 E-value=0.00039 Score=80.67 Aligned_cols=81 Identities=21% Similarity=0.291 Sum_probs=59.1
Q ss_pred ceeeecccccchhhhhhh---ccccchhhhhhhhhhcccCC-CCccccccccccccccccccccCCC-hhhHHHHHHHhh
Q 003041 499 LCSLRYDLTVPFARYVAM---NGLTSFKRHQIAKVYRRDNP-SKGRYREFYQCDFDIAGQYERMGPD-FEVVKILTELLN 573 (854)
Q Consensus 499 ~l~LRpDlT~~~aR~~a~---~~~~p~K~y~ig~VfR~e~p-~~Gr~REf~Q~d~eiig~~~~~~aD-aEvI~l~~eil~ 573 (854)
.-+||+.+++++...+.. ++..|+|+|++|+|||++.. ...++.||+|.+.=+.|.. .+ .++..++..+++
T Consensus 199 ~sVLRTSLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~----vDF~DLKGvLE~LL~ 274 (685)
T 2odr_D 199 KLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEG----VDINDGKAIAEGLLS 274 (685)
T ss_dssp SEEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTT----CCHHHHHHHHHHHHH
T ss_pred cCcccccchhhHHHHHHHHHhCCCCCeEEEEeccEEecCccccccCCCcceEEEEEEECCC----CCHHHHHHHHHHHHH
Confidence 568999999965554443 45679999999999997653 3346789999999888862 34 466678888888
Q ss_pred hcCCCcceee
Q 003041 574 ELDIGDYEIK 583 (854)
Q Consensus 574 ~Lgl~~~~i~ 583 (854)
.||+..+.++
T Consensus 275 ~LGi~~vrfr 284 (685)
T 2odr_D 275 QFGFTNFKFI 284 (685)
T ss_dssp TTTCCCEEEE
T ss_pred HcCCCeEEEE
Confidence 8886434443
No 75
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.94 E-value=0.00042 Score=80.54 Aligned_cols=81 Identities=21% Similarity=0.291 Sum_probs=58.9
Q ss_pred ceeeecccccchhhhhhh---ccccchhhhhhhhhhcccCC-CCccccccccccccccccccccCCC-hhhHHHHHHHhh
Q 003041 499 LCSLRYDLTVPFARYVAM---NGLTSFKRHQIAKVYRRDNP-SKGRYREFYQCDFDIAGQYERMGPD-FEVVKILTELLN 573 (854)
Q Consensus 499 ~l~LRpDlT~~~aR~~a~---~~~~p~K~y~ig~VfR~e~p-~~Gr~REf~Q~d~eiig~~~~~~aD-aEvI~l~~eil~ 573 (854)
.-+||+.+++++...+.. ++..|+|+|++|+|||++.. ...++.||+|.+.=+.|.. .+ .++..++..+++
T Consensus 199 ~sVLRTSLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~EfhqLeGlv~G~~----vDF~DLKGvLE~LL~ 274 (701)
T 2odr_C 199 KLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEG----VDINDGKAIAEGLLS 274 (701)
T ss_dssp EEEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTT----CCHHHHHHHHHHHHH
T ss_pred cCcccccchhhHHHHHHHHHhCCCCCeEEEEEeeEEccCccccccCCCcceEEEEEEECCC----CCHHHHHHHHHHHHH
Confidence 468999999965554443 45679999999999997653 3345789999999888862 34 456678888888
Q ss_pred hcCCCcceee
Q 003041 574 ELDIGDYEIK 583 (854)
Q Consensus 574 ~Lgl~~~~i~ 583 (854)
.||+..+.++
T Consensus 275 ~LGi~~vrfr 284 (701)
T 2odr_C 275 QFGFTNFKFI 284 (701)
T ss_dssp TTTCCCEEEE
T ss_pred HcCCCeEEEE
Confidence 8886434443
No 76
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=96.80 E-value=0.00073 Score=79.18 Aligned_cols=117 Identities=19% Similarity=0.229 Sum_probs=72.4
Q ss_pred hHHHHHHHhHHHHHHHHH-hcCccccCcchhHhHHhhhhccCCCchhhhhhhh-ccCCceeeecccccchhhhhhhcccc
Q 003041 443 EQMAVREKAFSIITEVFK-RHGAMALDTPVFEMRETLMGKYGEDSKLIYDLAD-QGGELCSLRYDLTVPFARYVAMNGLT 520 (854)
Q Consensus 443 ~~~~~~~~i~~~l~~if~-~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D-~~G~~l~LRpDlT~~~aR~~a~~~~~ 520 (854)
.-.++|.++...+++.|. .+||.||+||+|.... . .|.. -|.+-. ..|..+.|+----...-+.++. -
T Consensus 146 ~~lr~Rs~i~~~iR~f~~~~~gF~EVeTPiL~~st---~-~GA~---~F~v~~~~~g~~~~L~qSpql~kq~l~v~---g 215 (617)
T 4ah6_A 146 YNLRLRSQMVMKMREYLCNLHGFVDIETPTLFKRT---P-GGAK---EFLVPSREPGKFYSLPQSPQQFKQLLMVG---G 215 (617)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCEECCCCSSBCCC---C-SSSC---CCEEECSSTTCEEECCSSTTHHHHHHHHT---S
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEeCCeeccCC---C-CCCc---CceeccccCCcccccccCHHHHHHHHHhc---c
Confidence 346888899999999996 7999999999986421 1 1211 122211 2355555552111011112221 1
Q ss_pred chhhhhhhhhhcccCCCCccccccccccccccccccccCCChhhHHHHHHHhhh
Q 003041 521 SFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNE 574 (854)
Q Consensus 521 p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI~l~~eil~~ 574 (854)
--|+|+||++||+|.....|.-||+|+++|.-... .-+++.++.++++.
T Consensus 216 ~~rvfqi~~~FR~E~~~t~r~pEFt~lE~e~af~d-----~~d~m~~~E~l~~~ 264 (617)
T 4ah6_A 216 LDRYFQVARCYRDEGSRPDRQPEFTQIDIEMSFVD-----QTGIQSLIEGLLQY 264 (617)
T ss_dssp CSEEEEEEEEECCCSSCSSSCSEEEEEEEEEESCC-----HHHHHHHHHHHHHH
T ss_pred cCcEEEEEhheecccCCCCcCcceecceeeecCCC-----HHHHHHHHHHHHHH
Confidence 34899999999999887778889999999986642 12444444444443
No 77
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=96.79 E-value=0.00056 Score=74.27 Aligned_cols=116 Identities=15% Similarity=0.119 Sum_probs=79.8
Q ss_pred HHhHHHHHHHHHhcCccccCcchhHhHH-hhhhccC--CC--ch---hhhhhhhccCCceeeecccccchhhhhhhcccc
Q 003041 449 EKAFSIITEVFKRHGAMALDTPVFEMRE-TLMGKYG--ED--SK---LIYDLADQGGELCSLRYDLTVPFARYVAMNGLT 520 (854)
Q Consensus 449 ~~i~~~l~~if~~~G~~eI~tP~le~~e-~~~~~~g--~~--~k---~~y~~~D~~G~~l~LRpDlT~~~aR~~a~~~~~ 520 (854)
..+.+.|+++|...||.++.+|.++... .|. ..+ .+ .. ..|.+. +..+||..+++..+|.+..+ ..
T Consensus 110 ~~~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd-~Ln~p~dhpaR~~~dt~~i~----e~~vLRThtsp~~lr~l~~~-~~ 183 (327)
T 3pco_A 110 TRTIDRIESFFGELGFTVATGPEIEDDYHNFD-ALNIPGHHPARADHDTFWFD----TTRLLRTQTSGVQIRTMKAQ-QP 183 (327)
T ss_dssp HHHHHHHHHHHHTTTCBCCCCCSEECTCCCCC-TTTCCSSSHHHHHTTCCBSS----SSCEECSCTHHHHHHHHTTC-CS
T ss_pred HHHHHHHHHHHHHCCCeEEECCCccCCHHHHH-hhCCCCCChhhcccccEEeC----CCceecccCCHHHHHHHHhC-CC
Confidence 5666779999999999999999886432 111 111 11 11 123332 45689999999999999764 56
Q ss_pred chhhhhhhhhhcccCCCCccccccccccccccccccccCCC-hhhHHHHHHHhhhc
Q 003041 521 SFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPD-FEVVKILTELLNEL 575 (854)
Q Consensus 521 p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aD-aEvI~l~~eil~~L 575 (854)
|+|+|++|+|||.+ ....+.-+|+|.+.-+++.. .+ .++-.++..+++.|
T Consensus 184 pirifeiGrVyR~d-~d~th~p~fhqlegl~v~~~----v~f~dLKg~Le~~l~~l 234 (327)
T 3pco_A 184 PIRIIAPGRVYRND-YDQTHTPMFHQMEGLIVDTN----ISFTNLKGTLHDFLRNF 234 (327)
T ss_dssp SCCBCCEECCBCSC-CBTTBCSBCCEEEEEEEETT----CCHHHHHHHHHHHHHHH
T ss_pred CeeEEeeccEEecC-CCcccCCcccEEEEEEECCC----CCHHHHHHHHHHHHHHH
Confidence 99999999999987 34456678999876566531 23 35555666777766
No 78
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=96.47 E-value=0.0024 Score=65.30 Aligned_cols=135 Identities=19% Similarity=0.189 Sum_probs=92.2
Q ss_pred HHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCC-Cchhhhhhhhc-cCCceeeecccccchhhhhhhc---cccch
Q 003041 448 REKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGE-DSKLIYDLADQ-GGELCSLRYDLTVPFARYVAMN---GLTSF 522 (854)
Q Consensus 448 ~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~-~~k~~y~~~D~-~G~~l~LRpDlT~~~aR~~a~~---~~~p~ 522 (854)
.+++++.+++.+...||.|+.|-.|...+.+.. .+. ..+..+++.++ +-+.-+||+.+.+++.+.++.| +..++
T Consensus 6 ~~~~~~~ir~~L~~~G~~Evitysf~s~~~~~~-~~~~~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~~ 84 (213)
T 3ica_A 6 RYKWQTVVSEQLVGAGFNEILNNSLTAGSYYEG-LKSHPREMAVELMNPLSQELNCMRQTLLFGGLETLSHNLRRKHLSL 84 (213)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEEGGGGTT-CSSSCGGGCCBCSSBSCSSEEEECSSSHHHHHHHHHHHHTTTCSEE
T ss_pred HHHHHHHHHHHHHHCCCceeeeccCCCHHHHhh-hcccCcCCeEEecCCccHHHHHHHHHhHHHHHHHHHHHHcCCCCCe
Confidence 356777899999999999999988876664422 221 12345677776 4566789999999999999875 33468
Q ss_pred hhhhhhhhhcccCCC------Ccccccccccccccccccc-------ccCCCh-hhHHHHHHHhhhcCCC--cceee
Q 003041 523 KRHQIAKVYRRDNPS------KGRYREFYQCDFDIAGQYE-------RMGPDF-EVVKILTELLNELDIG--DYEIK 583 (854)
Q Consensus 523 K~y~ig~VfR~e~p~------~Gr~REf~Q~d~eiig~~~-------~~~aDa-EvI~l~~eil~~Lgl~--~~~i~ 583 (854)
|+|++|+||+.+... .+.++|.....+=+.|... ....|. ++-.++..++..+|++ .+.+.
T Consensus 85 ~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~Kg~ve~ll~~lgi~~~~~~~~ 161 (213)
T 3ica_A 85 YLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLCRVGIETGAYTLK 161 (213)
T ss_dssp EEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred eEEEeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHHHHHHHHHHHHhCCCccceEEe
Confidence 999999999865321 1235677777776666411 012354 4556778888889885 35443
No 79
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=96.34 E-value=0.0025 Score=65.23 Aligned_cols=134 Identities=16% Similarity=0.191 Sum_probs=88.0
Q ss_pred HHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCC-Cchhhhhhhhc-cCCceeeecccccchhhhhhhcc---ccchh
Q 003041 449 EKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGE-DSKLIYDLADQ-GGELCSLRYDLTVPFARYVAMNG---LTSFK 523 (854)
Q Consensus 449 ~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~-~~k~~y~~~D~-~G~~l~LRpDlT~~~aR~~a~~~---~~p~K 523 (854)
+++++.+++.+...||.|+.|-.|...+.+.. .+. ..+..+++.++ +-+.-+||+.+.+++.+.++.|. ..++|
T Consensus 7 ~~~~~~ir~~l~~~G~~Evitysf~~~~~~~~-~~~~~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~v~ 85 (213)
T 3ig2_A 7 NKLQNLVAEQLVGCGFNEILNNSLTRAAYYDG-LESYPSKNLVMLLNPLSADLNCMRQTLLFGGLESIAHNANRKNADLK 85 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEECGGGGTT-CSSSCGGGCEEBSSGGGCSCCEECSCSHHHHHHHHHHC------CCE
T ss_pred HHHHHHHHHHHHHCCCeEEeccccCCHHHHHh-hcccCcCCeEEEeCCcchhHHHHHHHhHHHHHHHHHHHhcCCCCCee
Confidence 56777899999999999999988876664422 221 12345666665 44567899999999999998763 34689
Q ss_pred hhhhhhhhcccCCC------Cccccccccccccccccccc-------cCCCh-hhHHHHHHHhhhcCCC--cceee
Q 003041 524 RHQIAKVYRRDNPS------KGRYREFYQCDFDIAGQYER-------MGPDF-EVVKILTELLNELDIG--DYEIK 583 (854)
Q Consensus 524 ~y~ig~VfR~e~p~------~Gr~REf~Q~d~eiig~~~~-------~~aDa-EvI~l~~eil~~Lgl~--~~~i~ 583 (854)
+|++|+||+.+... .+.++|....++=+.|...+ ...|. ++-.++..++..+|++ ++.++
T Consensus 86 lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~dlKg~ve~ll~~lg~~~~~~~~~ 161 (213)
T 3ig2_A 86 FFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFKRLGLDLHSLVVG 161 (213)
T ss_dssp EEEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHHHTTBCGGGCEEE
T ss_pred EEEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCHHHHHHHHHHHHHHhCCCccceEEe
Confidence 99999999865311 12356777777766664110 00133 4455777788888875 35444
No 80
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=96.33 E-value=0.0026 Score=74.85 Aligned_cols=126 Identities=16% Similarity=0.211 Sum_probs=88.6
Q ss_pred HHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCC--Cchhhhhhhhc-cCCceeeecccccchhhhhhhcc--ccchh
Q 003041 449 EKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGE--DSKLIYDLADQ-GGELCSLRYDLTVPFARYVAMNG--LTSFK 523 (854)
Q Consensus 449 ~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~--~~k~~y~~~D~-~G~~l~LRpDlT~~~aR~~a~~~--~~p~K 523 (854)
+++.+.++++|...||+|+.|+.|...+......+. +....+++.++ +.+.-+||+.+.+++.+.++.|. ..|+|
T Consensus 394 ~~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~~~~~v~L~NPis~e~svmRtsLlpgLL~~l~~N~~~~~~vr 473 (589)
T 3l4g_B 394 NKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLK 473 (589)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTTSSCCCBBSSCSSGGGSEECSCSHHHHHHHHHHTTTSCSCEE
T ss_pred HHHHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCCCCCeEEEcCCCchhHhHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 455677999999999999999999776532222221 11235666665 33556899999999999998763 34899
Q ss_pred hhhhhhhhcccCCCCccccccccccccccccccccCCChhhH-HHHHHHhhhcCCC
Q 003041 524 RHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVV-KILTELLNELDIG 578 (854)
Q Consensus 524 ~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~~~aDaEvI-~l~~eil~~Lgl~ 578 (854)
+|++|+|||.+....-..+|+.+...-+.|.. .+.+.+ -++..+++.||++
T Consensus 474 lFEiG~Vf~~d~~~~~~~~e~~~la~~~~g~~----~~f~~lkg~le~ll~~lg~~ 525 (589)
T 3l4g_B 474 LFEISDIVIKDSNTDVGAKNYRHLCAVYYNKN----PGFEIIHGLLDRIMQLLDVP 525 (589)
T ss_dssp EEEEEEEEEECTTSTTSEEEEEEEEEEEESSS----CCHHHHHHHHHHHHHHTTCC
T ss_pred EEEeeeEEecCCccccCCccccEEEEEEECCC----CCHHHHHHHHHHHHHHcCCC
Confidence 99999999976432234678888887666642 355544 4667778888875
No 81
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=95.79 E-value=0.0046 Score=75.10 Aligned_cols=128 Identities=14% Similarity=0.139 Sum_probs=88.3
Q ss_pred HHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchh-hhhhhhc-cCCceeeecccccchhhhhhhc---cccch
Q 003041 448 REKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKL-IYDLADQ-GGELCSLRYDLTVPFARYVAMN---GLTSF 522 (854)
Q Consensus 448 ~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~-~y~~~D~-~G~~l~LRpDlT~~~aR~~a~~---~~~p~ 522 (854)
.+++.+.++++|...||.|+.|..|...+.+ ...+. ... .+++.++ +.+.-+||+.+.+++.+.++.| +..|+
T Consensus 495 ~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~-~~l~~-~~~~~v~L~NPis~e~svLRtsLlpgLL~~l~~N~~r~~~~v 572 (795)
T 2rhq_B 495 RQHKTRTLKETLEGAGLNQAITYSLVSKDHA-KDFAL-QERPTISLLMPMSEAHATLRQSLLPHLIEATAYNVARKNKDV 572 (795)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEECTTTT-TTTCS-SCCCCEECSSCSCTTSSEECSCSHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHHHHHHHHCCCEEEecCCccCHHHH-HhhCC-CCCceEEEcCCCchhhhhhhhccHHHHHHHHHHHhcCCCCCe
Confidence 3556677999999999999998877665533 22322 123 3556655 3345689999999999999875 35789
Q ss_pred hhhhhhhhhcccCCCCcccccccccccccccccc--c-----cCCCh-hhHHHHHHHhhhcCCC
Q 003041 523 KRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYE--R-----MGPDF-EVVKILTELLNELDIG 578 (854)
Q Consensus 523 K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~--~-----~~aDa-EvI~l~~eil~~Lgl~ 578 (854)
|+|++|+|||.+.....+ +|+.|.++=+.|... . ...|. ++-.++..+++.||++
T Consensus 573 rlFEiG~Vf~~d~~~~~~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~dlKg~le~ll~~lG~~ 635 (795)
T 2rhq_B 573 RLYEIGRVFFGNGEGELP-DEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGVVDRVAEKLNLE 635 (795)
T ss_dssp EEEEEEEEEECCCTTSCC-EEEEEEEEEEESEEEEEGGGTEEEECCHHHHHHHHHHHHHHHTCC
T ss_pred EEEEEeeEEecCCcccCc-chhhEEEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHcCCc
Confidence 999999999954321123 799998887777521 0 01354 4555777788888864
No 82
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=94.79 E-value=0.015 Score=70.50 Aligned_cols=125 Identities=18% Similarity=0.151 Sum_probs=85.7
Q ss_pred HHHhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhhhc-cCCceeeecccccchhhhhhhc---c-ccch
Q 003041 448 REKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQ-GGELCSLRYDLTVPFARYVAMN---G-LTSF 522 (854)
Q Consensus 448 ~~~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D~-~G~~l~LRpDlT~~~aR~~a~~---~-~~p~ 522 (854)
.+++.+.++++|...||+|+.|-.|...+.+ ...+.+ ...+++.++ +.+.-+||+.+.+++.+.++.| + ..++
T Consensus 491 ~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~-~~l~~~-~~~v~L~NPis~d~svLRtsLlpgLL~~l~~N~~r~~~~~v 568 (785)
T 1b7y_B 491 PYRKEQRLREVLSGLGFQEVYTYSFMDPEDA-RRFRLD-PPRLLLLNPLAPEKAALRTHLFPGLVRVLKENLDLDRPERA 568 (785)
T ss_dssp HHHHHHHHHHHHHHHTCEECCCCSEECTTHH-HHTTCC-CCSCEESSCSSTTSSEECSCSHHHHHHHHHHHHHHSCCSCE
T ss_pred HHHHHHHHHHHHHHCCCEEEecCcccCHHHH-HhcCCC-CCeEEEcCCCchhhhhhhhhhHHHHHHHHHHHhhcCCCCCe
Confidence 4566777999999999999987766554433 212211 223556555 3345689999999999999876 4 5789
Q ss_pred hhhhhhhhhcccCCCCccccccccccccccccccc------cCCCh-hhHHHHHHHhhhcCCCcceee
Q 003041 523 KRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYER------MGPDF-EVVKILTELLNELDIGDYEIK 583 (854)
Q Consensus 523 K~y~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~~------~~aDa-EvI~l~~eil~~Lgl~~~~i~ 583 (854)
|+|++|+||| + +|+.|.++=+.|.... ...|. ++-.++..+++.||+ ++.++
T Consensus 569 rlFEiG~Vf~-~-------~e~~~lagl~~G~~~~~~w~~~~~vdf~dlKg~le~ll~~lgi-~~~~~ 627 (785)
T 1b7y_B 569 LLFEVGRVFR-E-------REETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARLGL-AFRVE 627 (785)
T ss_dssp EEEEEEEEES-S-------SEEEEEEEEEESSCBSCSSSSCCBCSHHHHHHHHHHHHHHHTC-CCEEE
T ss_pred EEEEEeeeec-c-------ChhhEEEEEEECCCcccccCccCCcCHHHHHHHHHHHHHHcCC-ceEEe
Confidence 9999999999 2 6888888777775210 01354 455677778888886 34443
No 83
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=93.05 E-value=0.051 Score=60.96 Aligned_cols=92 Identities=17% Similarity=0.064 Sum_probs=62.5
Q ss_pred HHhHHHHHHHHHhc--------CccccCc-chhHhHH-hhhhccC--CC-----chhhhhhhhccCCceeeecccccchh
Q 003041 449 EKAFSIITEVFKRH--------GAMALDT-PVFEMRE-TLMGKYG--ED-----SKLIYDLADQGGELCSLRYDLTVPFA 511 (854)
Q Consensus 449 ~~i~~~l~~if~~~--------G~~eI~t-P~le~~e-~~~~~~g--~~-----~k~~y~~~D~~G~~l~LRpDlT~~~a 511 (854)
..+.+.|+++|... ||.++.+ |.++... .|. ..+ .+ ....|.+. ...+||...++..+
T Consensus 51 ~~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd-~L~~p~dHpaR~~~Dtfyi~----~~~vLRThts~~~~ 125 (415)
T 3cmq_A 51 WLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFD-SLLIPADHPSRKKGDNYYLN----RTHMLRAHTSAHQW 125 (415)
T ss_dssp HHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTG-GGTCCTTCGGGCGGGSCBSS----SSEEECSSGGGGHH
T ss_pred HHHHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHH-HhCCCCCCCcccccceEEec----CCeEEcCCCcHHHH
Confidence 44555566666655 8999998 5555433 231 122 11 12234342 34789999999999
Q ss_pred hhhhhccccchhhhhhhhhhcccCCCCcccccccccc
Q 003041 512 RYVAMNGLTSFKRHQIAKVYRRDNPSKGRYREFYQCD 548 (854)
Q Consensus 512 R~~a~~~~~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d 548 (854)
|.+..+. | |++.+|.|||+|.....++-+|+|..
T Consensus 126 ~~l~~~~--~-k~~~~G~VyR~D~~da~h~n~fhQ~e 159 (415)
T 3cmq_A 126 DLLHAGL--D-AFLVVGDVYRRDQIDSQHYPIFHQLE 159 (415)
T ss_dssp HHHHTTC--S-EEEEEEEEECCCCCBTTBCSEEEEEE
T ss_pred HHHHHCC--C-CEEEeeeEEeccchhhhhhHHhcCCC
Confidence 9998753 4 99999999999876677888898876
No 84
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=90.03 E-value=0.16 Score=61.58 Aligned_cols=132 Identities=14% Similarity=0.063 Sum_probs=87.9
Q ss_pred HhHHHHHHHHHhcCccccCcchhHhHHhhhhccCCCchhhhhhhhc-cCCceeeecccccchhhhhhhc---cccchhhh
Q 003041 450 KAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQ-GGELCSLRYDLTVPFARYVAMN---GLTSFKRH 525 (854)
Q Consensus 450 ~i~~~l~~if~~~G~~eI~tP~le~~e~~~~~~g~~~k~~y~~~D~-~G~~l~LRpDlT~~~aR~~a~~---~~~p~K~y 525 (854)
...+.+++.+...||.|+.|-.|...+.+.. .+.. +...++.++ +-+.=+||+.+.+++...++.| +..++|+|
T Consensus 493 ~~~~~~r~~l~~~G~~Evitysf~~~~~~~~-~~~~-~~~v~l~NPis~e~svmRtsLlpgLL~~~~~N~~r~~~~v~lF 570 (795)
T 3pco_B 493 LSLKRVKTLLNDKGYQEVITYSFVDPKVQQM-IHPG-VEALLLPSPISVEMSAMRLSLWTGLLATVVYNQNRQQNRVRIF 570 (795)
T ss_dssp CCHHHHHHHHHHTTCEECCCCSEECHHHHHH-HSSS-CCCCBCSSCSCSTTCEECSSSHHHHHHHHHHHHTSSCCCCEEE
T ss_pred HHHHHHHHHHHHCCCeeeeccCcCCHHHHHh-hCCC-CCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCccEE
Confidence 3456689999999999999988876654322 2321 234566666 4456679999999999988875 34579999
Q ss_pred hhhhhhcccCCCCcccccccccccccccccc-------ccCCChh-hHHHHHHHhhhcCC-Ccceee
Q 003041 526 QIAKVYRRDNPSKGRYREFYQCDFDIAGQYE-------RMGPDFE-VVKILTELLNELDI-GDYEIK 583 (854)
Q Consensus 526 ~ig~VfR~e~p~~Gr~REf~Q~d~eiig~~~-------~~~aDaE-vI~l~~eil~~Lgl-~~~~i~ 583 (854)
++|+||+.+......++|.....+=+.|... ....|.. +-.++..++..+|+ .++.+.
T Consensus 571 EiG~Vf~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~dF~dlKg~ve~ll~~lg~~~~~~~~ 637 (795)
T 3pco_B 571 ESGLRFVPDTQAPLGIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKGDLESVLDLTGKLNEVEFR 637 (795)
T ss_dssp EEEEEEEECTTSSTTEEEEEEEEEEEESBSSCSCSSSCCCBCCHHHHHHHHHHHTTTSSCCSSCCEE
T ss_pred EeeeEEecCCCcccCcchhheEEEEEECCCcccccccCCCCCCHHHHHHHHHHHHHHcCCCcceEEE
Confidence 9999998654322345677666665555321 0123554 44577788888886 345443
No 85
>1gkm_A Histidase, HAL, histidine ammonia-lyase; histidine degradation; HET: MDO; 1.0A {Pseudomonas putida} SCOP: a.127.1.2 PDB: 1b8f_A* 1gkj_A* 1eb4_A* 1gk3_A 1gk2_A
Probab=73.32 E-value=1 Score=51.36 Aligned_cols=77 Identities=12% Similarity=0.135 Sum_probs=56.8
Q ss_pred eEEEecCCCCCCCccceeeeecCceeEEecchhhhhhhcCCCC-----CCCCCcceeeccCCcc----cchhhhHHHHHH
Q 003041 8 AVITVGGKGSSLNSSSVYAISNGLAQVRVDSSALDRLSSTLPN-----QNPPPVTKFQIPIPKT----LTLEESRAFLTV 78 (854)
Q Consensus 8 ~~v~l~g~g~~lt~~~vygi~tG~a~~~i~~~~~~~lq~~~~~-----~~~~~~~~~h~gvg~~----l~~~~vRa~m~~ 78 (854)
++|+|+|+ +||+++|+.|+.+.+++.++++.+++++++... ++..+.|..+.|.|.. ++++.......-
T Consensus 1 ~~v~l~g~--~Lt~~~v~~va~~~~~v~l~~~a~~~i~~s~~~v~~~~~~~~~vYGvnTGfG~~~~~~I~~~~~~~lQ~n 78 (507)
T 1gkm_A 1 TELTLKPG--TLTLAQLRAIHAAPVRLQLDASAAPAIDASVACVEQIIAEDRTAYGINTGFGLLASTRIASHDLENLQRS 78 (507)
T ss_dssp CEEEECTT--CCCHHHHHHHHHSCCEEEECGGGHHHHHHHHHHHHHHHHTTCCCTTTTBCSGGGTTCBCCHHHHHHHHHH
T ss_pred CeEEECCC--CCCHHHHHHHHcCCCceeeCHHHHHHHHHHHHHHHHHHhcCCceeeeccCCCcccCcccCHHHHHHHHHH
Confidence 36899996 899999999999889999999999999887631 2224556667888874 555666665555
Q ss_pred HHHHHhcC
Q 003041 79 LLNKLLLG 86 (854)
Q Consensus 79 rln~l~~G 86 (854)
-+-+.+.|
T Consensus 79 Li~sha~G 86 (507)
T 1gkm_A 79 LVLSHAAG 86 (507)
T ss_dssp HHHHHCCC
T ss_pred HHHHHhcc
Confidence 55555555
No 86
>3unv_A ADMH; MIO, lyase; HET: KWS SFE PHE; 1.54A {Pantoea agglomerans}
Probab=67.17 E-value=1.1 Score=51.65 Aligned_cols=78 Identities=8% Similarity=0.130 Sum_probs=58.4
Q ss_pred EEEecCCCCCCCccceeeeecCceeEEecchhhhhhhcCCCC-----CCCCCcceeeccCCcc----cchhhhHHHHHHH
Q 003041 9 VITVGGKGSSLNSSSVYAISNGLAQVRVDSSALDRLSSTLPN-----QNPPPVTKFQIPIPKT----LTLEESRAFLTVL 79 (854)
Q Consensus 9 ~v~l~g~g~~lt~~~vygi~tG~a~~~i~~~~~~~lq~~~~~-----~~~~~~~~~h~gvg~~----l~~~~vRa~m~~r 79 (854)
.|+|+|+ +||+++|+.|+.+.++|.++++.+++++++... ++..+.|..+.|.|.. ++++.......--
T Consensus 27 ~v~l~g~--~Ltl~~v~~va~~~~~v~ls~~a~~ri~~sr~~v~~~~~~g~~vYGvnTGfG~~a~~~i~~~~~~~LQ~nL 104 (547)
T 3unv_A 27 FHISSGK--DISLEEIARAARDHQPVTLHDEVVNRVTRSRSILESMVSDERVIYGVNTSMGGFVNYIVPIAKASELQNNL 104 (547)
T ss_dssp EEECTTC--CCCHHHHHHHHHHTCCEEECHHHHHHHHHHHHHHHHHHHTTCCCBTTTBCCGGGTTCBCCGGGHHHHHHHH
T ss_pred eEEEcCC--CCCHHHHHHHHhCCCccccCHHHHHHHHHHHHHHHHHHhcCCceeceecCCCCccCCccCHHHHHHHHHHH
Confidence 3899996 899999999998889999999999999887631 2224566677888873 5666666666655
Q ss_pred HHHHhcCCCc
Q 003041 80 LNKLLLGSSI 89 (854)
Q Consensus 80 ln~l~~G~SG 89 (854)
+-+.+.| .|
T Consensus 105 irsHa~G-vG 113 (547)
T 3unv_A 105 INAVATN-VG 113 (547)
T ss_dssp HHHTCCC-EE
T ss_pred HHHHhcC-CC
Confidence 5566555 35
No 87
>2qve_A Tyrosine aminomutase; MIO, enediyne, transferase; HET: MDO 247; 2.00A {Streptomyces globisporus} PDB: 2rjr_A* 2rjs_A* 2ohy_A* 3kdz_A* 3kdy_A*
Probab=64.92 E-value=1.6 Score=49.95 Aligned_cols=75 Identities=15% Similarity=0.209 Sum_probs=55.9
Q ss_pred EEecCCCCCCCccceeeeecCceeEEecchhhhhhhcCCCC-----CCCCCcceeeccCCcc----cchhhhHHHHHHHH
Q 003041 10 ITVGGKGSSLNSSSVYAISNGLAQVRVDSSALDRLSSTLPN-----QNPPPVTKFQIPIPKT----LTLEESRAFLTVLL 80 (854)
Q Consensus 10 v~l~g~g~~lt~~~vygi~tG~a~~~i~~~~~~~lq~~~~~-----~~~~~~~~~h~gvg~~----l~~~~vRa~m~~rl 80 (854)
|+|+|+ +||+++|+.|+.+.++|.++++.+++++++... ++..+.|..+.|.|.. ++++.......--+
T Consensus 2 v~l~g~--~Lt~~~v~~va~~~~~v~l~~~a~~ri~~s~~~v~~~~~~~~~vYGvnTGfG~~a~~~i~~~~~~~LQ~nLi 79 (526)
T 2qve_A 2 VSVDGE--TLTVEAVRRVAEERATVDVPAESIAKAQKSREIFEGIAEQNIPIYGVTTGYGEMIYMQVDKSKEVELQTNLV 79 (526)
T ss_dssp EECCSS--SCCHHHHHHHHHSCCCEECCHHHHHHHHHHHHHHHHHHTTTCCCTTTSBCSGGGGGEEECGGGHHHHHHHHH
T ss_pred eEecCC--CCCHHHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHHHhcCCceeeeccCCCcccCCCcCHHHHHHHHHHHH
Confidence 788996 899999999999889999999999999877531 2334566677888874 55666666655555
Q ss_pred HHHhcC
Q 003041 81 NKLLLG 86 (854)
Q Consensus 81 n~l~~G 86 (854)
-+.+.|
T Consensus 80 ~sha~G 85 (526)
T 2qve_A 80 RSHSAG 85 (526)
T ss_dssp HHTCCC
T ss_pred HHHhcc
Confidence 555555
No 88
>2nyn_A Phenylalanine/histidine ammonia-lyase; methylidene imidazolone prosthetic group; HET: MDO; 1.90A {Anabaena variabilis} PDB: 3czo_A* 2nyf_A*
Probab=55.49 E-value=2.3 Score=49.14 Aligned_cols=76 Identities=13% Similarity=0.194 Sum_probs=47.3
Q ss_pred EEEecCCCCCCCccceeeeecCc--eeEEecchhhhhhhcCCCC-----CCCCCcceeeccCCcc----cchhhhHHHHH
Q 003041 9 VITVGGKGSSLNSSSVYAISNGL--AQVRVDSSALDRLSSTLPN-----QNPPPVTKFQIPIPKT----LTLEESRAFLT 77 (854)
Q Consensus 9 ~v~l~g~g~~lt~~~vygi~tG~--a~~~i~~~~~~~lq~~~~~-----~~~~~~~~~h~gvg~~----l~~~~vRa~m~ 77 (854)
+|+|+|+ +||+++|+.|+.+. ++|.++++.+++++++... ++..+.|..+.|.|.. ++++.......
T Consensus 25 ~v~l~g~--~Lt~~~v~~va~~~~~~~v~l~~~a~~ri~~sr~~v~~~~~~g~~vYGvnTGfG~~a~~~I~~~~~~~LQ~ 102 (565)
T 2nyn_A 25 NVIIGNQ--KLTINDVARVARNGTLVSLTNNTDILQGIQASCDYINNAVESGEPIYGVTSGFGGMANVAISREQASELQT 102 (565)
T ss_dssp CEEESSS--CCCHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHSCC-----------------CCSHHHHHHHH
T ss_pred eEEECCC--CCCHHHHHHHHhCCCCceEeeCHHHHHHHHHHHHHHHHHHhcCCceeeeccCCCcccCcccCHHHHHHHHH
Confidence 5999996 89999999999887 8999999999999887631 2334566677888874 45566666555
Q ss_pred HHHHHHhcC
Q 003041 78 VLLNKLLLG 86 (854)
Q Consensus 78 ~rln~l~~G 86 (854)
--+-+.+.|
T Consensus 103 nLirsHa~G 111 (565)
T 2nyn_A 103 NLVWFLKTG 111 (565)
T ss_dssp HHHHHTCCC
T ss_pred HHHHHHhcc
Confidence 555555555
No 89
>2o6y_A Putative histidine ammonia-lyase; methylidene imidazolone prosthetic group; HET: MDO; 1.50A {Rhodobacter sphaeroides} PDB: 2o7b_A* 2o7d_A* 2o7e_A* 2o78_A* 2o7f_A*
Probab=55.00 E-value=3.6 Score=47.07 Aligned_cols=76 Identities=16% Similarity=0.219 Sum_probs=57.5
Q ss_pred EEecCCCCCCCccceeeeecCceeEEecchhhhhhhcCCCC-----CCCCCcceeeccCCc----ccchhhhHHHHHHHH
Q 003041 10 ITVGGKGSSLNSSSVYAISNGLAQVRVDSSALDRLSSTLPN-----QNPPPVTKFQIPIPK----TLTLEESRAFLTVLL 80 (854)
Q Consensus 10 v~l~g~g~~lt~~~vygi~tG~a~~~i~~~~~~~lq~~~~~-----~~~~~~~~~h~gvg~----~l~~~~vRa~m~~rl 80 (854)
|+|+ + +||+++|+.|+.+.+++.++++.+++++++... ++..+.|..+.|.|. .++++.......--+
T Consensus 11 v~l~-~--~Ltl~~v~~va~~~~~v~l~~~a~~ri~~s~~~v~~~~~~~~~vYGvnTGfG~~~~~~i~~~~~~~lQ~nLi 87 (521)
T 2o6y_A 11 VELD-R--HIDLDQAHAVASGGARIVLAPPARDRCRASEARLGAVIREARHVYGLTTGFGPLANRLISGENVRTLQANLV 87 (521)
T ss_dssp EEES-S--CCCHHHHHHHHTTSSEEEECHHHHHHHHHHHHHHHHHHHTTBCCTTTSBCSGGGGGBBCCGGGHHHHHHHHH
T ss_pred EEeC-C--CCCHHHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHHHhcCCCcceecCCCCcccCccCCHHHHHHHHHHHH
Confidence 8899 4 799999999999889999999999999877531 222445666788887 366677777776666
Q ss_pred HHHhcCCCc
Q 003041 81 NKLLLGSSI 89 (854)
Q Consensus 81 n~l~~G~SG 89 (854)
-+.+.| .|
T Consensus 88 ~sha~G-vG 95 (521)
T 2o6y_A 88 HHLASG-VG 95 (521)
T ss_dssp HHHCCC-EE
T ss_pred HHHhcc-CC
Confidence 666666 36
No 90
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=51.05 E-value=4.3 Score=45.58 Aligned_cols=33 Identities=24% Similarity=0.440 Sum_probs=23.4
Q ss_pred CcccccccccCCcccCccceehhhHHHHHHHHH
Q 003041 716 GRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQ 748 (854)
Q Consensus 716 GRYD~Li~~fg~~~~pAvGfsigieRL~~~L~~ 748 (854)
..|+.++..+.-.-.|+.||++|+|||+.++..
T Consensus 383 ~~~~~yl~al~yG~PP~~G~glGiDRLvmll~g 415 (434)
T 1x54_A 383 KDYEWYLDLRRYGSVPHSGFGLGVERLVAWVLK 415 (434)
T ss_dssp GGGHHHHHTTTSSCCCEEEEEEEHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCCceEEEEcHHHHHHHHcC
Confidence 346666655531135899999999999988864
No 91
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=42.67 E-value=8.1 Score=43.28 Aligned_cols=33 Identities=15% Similarity=0.468 Sum_probs=23.9
Q ss_pred CcccccccccCCcccCccceehhhHHHHHHHHH
Q 003041 716 GRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQ 748 (854)
Q Consensus 716 GRYD~Li~~fg~~~~pAvGfsigieRL~~~L~~ 748 (854)
..|+.++..+.-.-.|+.||++|+|||+.++..
T Consensus 378 ~~~~~yl~al~yG~PP~~G~glGiDRLvmll~g 410 (429)
T 1wyd_A 378 ESFEFFLKWFDYGMPPHAGFGMGLARLMVMLTG 410 (429)
T ss_dssp GGGHHHHGGGGSCCCCEEEEEEEHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCCceEEEEcHHHHHHHHcC
Confidence 456666665521135899999999999998864
No 92
>1w27_A Phenylalanine ammonia-lyase 1; phenylpropanoid metabolism, MIO; HET: MDO; 1.7A {Petroselinum crispum} SCOP: a.127.1.2
Probab=41.27 E-value=5.9 Score=46.82 Aligned_cols=80 Identities=20% Similarity=0.143 Sum_probs=57.6
Q ss_pred eEEEecCCCCCCCccceeeeecC---ceeEEecchhhhhhhcCCCC-----CCCCCcceeeccCCcccc--hhhhHHHHH
Q 003041 8 AVITVGGKGSSLNSSSVYAISNG---LAQVRVDSSALDRLSSTLPN-----QNPPPVTKFQIPIPKTLT--LEESRAFLT 77 (854)
Q Consensus 8 ~~v~l~g~g~~lt~~~vygi~tG---~a~~~i~~~~~~~lq~~~~~-----~~~~~~~~~h~gvg~~l~--~~~vRa~m~ 77 (854)
..|+|+|+ +||+++|+.|+.+ .++|.++++.+++++++... ++..+.|..+.|.|..-+ .+.......
T Consensus 55 ~~v~l~g~--~Ltl~dv~aVa~~~~~~~~v~ls~~a~~rI~~sr~~v~~~~~~g~~VYGVnTGFG~la~~~~~~~~~LQ~ 132 (714)
T 1w27_A 55 PVVKLGGE--TLTISQVAAISARDGSGVTVELSEAARAGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQK 132 (714)
T ss_dssp SEEEECSS--CCCHHHHHHHHCCSCCCCEEEECGGGHHHHHHHHHHHHHHHSTTTTSCSCCCSSCTTSCSSSSSCSHHHH
T ss_pred CeEEECCC--CCCHHHHHHHHhcCCCCCeEeeCHHHHHHHHHHHHHHHHHHhcCCeeccccCCCCCcccccHHHHHHHHH
Confidence 45899996 8999999999987 58999999999999887631 233456667788887422 244455555
Q ss_pred HHHHHHhcCCCc
Q 003041 78 VLLNKLLLGSSI 89 (854)
Q Consensus 78 ~rln~l~~G~SG 89 (854)
--+-+++.|.-|
T Consensus 133 nLirsHa~Gv~G 144 (714)
T 1w27_A 133 ELIRFLNAGIFG 144 (714)
T ss_dssp HHHHHHCCCCCC
T ss_pred HHHHHHhCCcCC
Confidence 566677777634
No 93
>2yii_A Phenylalanine ammonia-lyase; HET: MDO; 2.18A {Taxus wallichiana var} PDB: 3nz4_A*
Probab=30.29 E-value=8.4 Score=45.49 Aligned_cols=79 Identities=15% Similarity=0.167 Sum_probs=55.0
Q ss_pred eEEEecCCCCC-CCccceeeeec-CceeEEec-chhhhhhhcCCCC-----CCCCCcceeeccCCcccch--hhhHHHHH
Q 003041 8 AVITVGGKGSS-LNSSSVYAISN-GLAQVRVD-SSALDRLSSTLPN-----QNPPPVTKFQIPIPKTLTL--EESRAFLT 77 (854)
Q Consensus 8 ~~v~l~g~g~~-lt~~~vygi~t-G~a~~~i~-~~~~~~lq~~~~~-----~~~~~~~~~h~gvg~~l~~--~~vRa~m~ 77 (854)
..|+|+|+ + ||+++|+.|+. |.++|.++ ++.+++++++... ++..+.|.-+.|.|..-+. +.......
T Consensus 45 ~~v~l~g~--~~Ltl~dv~aVa~~~~~~v~ls~~~a~~rI~~sr~~v~~~~~~g~~VYGVnTGFG~la~~~~~~~~~LQ~ 122 (705)
T 2yii_A 45 KKITVDGT--TPITVAHVAALARRHDVKVALEAEQCRARVETCSSWVQRKAEDGADIYGVTTGFGACSSRRTNRLSELQE 122 (705)
T ss_dssp CEEEESSS--SCCCHHHHHHHHHCTTCEEEECHHHHHHHHHHHHHHHHHHHHTTCCCTTTSBCCGGGTTCBCSCHHHHHH
T ss_pred CeEEECCC--CCCCHHHHHHHHhcCCCeEeeChHHHHHHHHHHHHHHHHHHhcCCeeeeeecCCCccccccHHHHHHHHH
Confidence 45899996 8 99999999995 67999999 9999999887531 2224566667888864322 44444555
Q ss_pred HHHHHHhcCCC
Q 003041 78 VLLNKLLLGSS 88 (854)
Q Consensus 78 ~rln~l~~G~S 88 (854)
--+-+++.|.-
T Consensus 123 nLirsHa~GvG 133 (705)
T 2yii_A 123 SLIRCLLAGVF 133 (705)
T ss_dssp HHHHHHCCCCC
T ss_pred HHHHHHhcCcc
Confidence 55555556643
No 94
>3bma_A D-alanyl-lipoteichoic acid synthetase; structural genomics, D-alanyl-lipoteichoic acid biosynthesis structure initiative, PSI-2; 2.24A {Streptococcus pneumoniae}
Probab=25.13 E-value=43 Score=37.08 Aligned_cols=68 Identities=13% Similarity=0.105 Sum_probs=53.9
Q ss_pred CCCchHHHHHHHHHHHhhc-ccCCCCCCCcc-chhhHHhHHHHHHHhHHHHHHHHHhcCc-cccCcchhHh
Q 003041 407 RDPEFDGLLTKIREIVESN-ESRRLPKLPKG-TRDFAKEQMAVREKAFSIITEVFKRHGA-MALDTPVFEM 474 (854)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~G-~~D~lp~~~~~~~~i~~~l~~if~~~G~-~eI~tP~le~ 474 (854)
+||||+.+...|..+...+ +.-++..+..| -+|+.+.....++..-++|+..++++|| ..++..--++
T Consensus 271 ~SpEy~Dlql~L~~~k~~~~~vlfVi~PVNgkWydytGl~~e~r~~~~~KIk~~l~s~Gf~~i~D~s~~~y 341 (407)
T 3bma_A 271 KSPEYNDLQLVLTQFSKSKVNPIFIIPPVNKKWMDYAGLREDMYQQTVQKIRYQLESQGFTNIADFSKDGG 341 (407)
T ss_dssp SCTHHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHTTCCHHHHHHHHHHHHHHHHTTTCCCEEECTTCTT
T ss_pred cCccHHHHHHHHHHHHHcCCceEEEEeCCchHHHHhcCCCHHHHHHHHHHHHHHHHHCCCcceeeccccCC
Confidence 7999999877776555544 44577888888 7999888889999999999999999999 6666544443
No 95
>1y2m_A Phenylalanine ammonia-lyase; alpha helices; HET: MSE; 1.60A {Rhodosporidium toruloides} PDB: 1t6j_A* 1t6p_A*
Probab=23.07 E-value=17 Score=43.10 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=34.9
Q ss_pred eEEEecCCCCCCCccceeeeecCceeEEec--chhhhhhhcCCCC----CCCCCcceeeccCCcccc
Q 003041 8 AVITVGGKGSSLNSSSVYAISNGLAQVRVD--SSALDRLSSTLPN----QNPPPVTKFQIPIPKTLT 68 (854)
Q Consensus 8 ~~v~l~g~g~~lt~~~vygi~tG~a~~~i~--~~~~~~lq~~~~~----~~~~~~~~~h~gvg~~l~ 68 (854)
..|+|+|+ +||+++|+.|+.+.++|.|+ ++.+++++++... -.. +.|..+.|.|..-+
T Consensus 58 ~~v~l~g~--~Ltl~dv~aVa~~~~~v~l~~~~~a~~ri~~s~~~v~~~~~~-~vYGVnTGfG~~a~ 121 (716)
T 1y2m_A 58 STLELDGY--SLNLGDVVSAARKGRPVRVKDSDEIRSKIDKSVEFLRSQLSM-SVYGVTTGFGGSAD 121 (716)
T ss_dssp SCEEECSS--CCCHHHHHHHHHSCCCEEECCCHHHHHHHHHHHHHHC--------------------
T ss_pred CeEEECCC--CCCHHHHHHHHcCCCeeeeCCCHHHHHHHHHHHHHHHHHhhc-CCCccccCCCcccC
Confidence 34899996 89999999999988999999 9999888776531 111 56666778886433
Done!