BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003042
(854 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UQU|A Chain A, Trehalose-6-Phosphate From E. Coli Bound With Udp-Glucose.
pdb|1UQU|B Chain B, Trehalose-6-Phosphate From E. Coli Bound With Udp-Glucose.
pdb|1UQT|A Chain A, Trehalose-6-Phosphate From E. Coli Bound With Udp-2-Fluoro
Glucose.
pdb|1UQT|B Chain B, Trehalose-6-Phosphate From E. Coli Bound With Udp-2-Fluoro
Glucose
Length = 482
Score = 206 bits (523), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 127/405 (31%), Positives = 205/405 (50%), Gaps = 26/405 (6%)
Query: 136 KYYHGFCKHYLWPLFHYMLPLTASHGARFDRGEWQAYLSANKVFADKVMEVINPDEDYVW 195
+YY+ F LWP FHY L L +F R W YL N + ADK++ ++ D+D +W
Sbjct: 75 EYYNQFSNAVLWPAFHYRLDLV-----QFQRPAWDGYLRVNALLADKLLPLLQ-DDDIIW 128
Query: 196 IHDYHLMVLPSFLRKRFHRVKVGFFLHSPFPSSEIYRTLPVRDEILKSLLNSDLIGFHTF 255
IHDYHL+ LRKR ++GFFLH PFP+ EI+ LP D +L+ L + DL+GF T
Sbjct: 129 IHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLGFQTE 188
Query: 256 DYARHFLSSCSRMLGLNYESKRGYIGLDYFGRTVSIKILPVGIHMGQFESIMSLDVTGQK 315
+ FL S + + S + + +G+ ++ P+GI + + K
Sbjct: 189 NDRLAFLDCLSNLTRVTTRSAKSHTA---WGKAFRTEVYPIGIEPKEIAK-QAAGPLPPK 244
Query: 316 VKELKEKFDGKIVILGVDDMDLFKGISLKFLAMGQLLEQHPDLRGKVVLVQITNPARSSG 375
+ +LK + I V+ +D KG+ +FLA LLE++P GK+ QI +R
Sbjct: 245 LAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDV 304
Query: 376 KDVQDLLSDTNRIAEEINLNFGKPGYEPIVIIKEPLSTQDKVPYYAIAECCVVNCVRDGM 435
+ QD+ A IN +G+ G+ P+ + + + + + ++ +V +RDGM
Sbjct: 305 QAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGM 364
Query: 436 NLVPYKYTVSRQGSPVLDRALGVDEKNPPQKKSVIIVSEFIGCSPSLSGAIRVNPWNVDA 495
NLV +Y ++ D NP V+++S+F G + L+ A+ VNP++ D
Sbjct: 365 NLVAKEYVAAQ------------DPANP----GVLVLSQFAGAANELTSALIVNPYDRDE 408
Query: 496 VADAMDSALQMENQEKILRHEKHYKYISSHDVAYWAKSIDQDLER 540
VA A+D AL M E+I RH + I +D+ +W + DL++
Sbjct: 409 VAAALDRALTMSLAERISRHAEMLDVIVKNDINHWQECFISDLKQ 453
>pdb|2WTX|A Chain A, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|B Chain B, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|C Chain C, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|D Chain D, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
Length = 474
Score = 205 bits (522), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 127/405 (31%), Positives = 205/405 (50%), Gaps = 26/405 (6%)
Query: 136 KYYHGFCKHYLWPLFHYMLPLTASHGARFDRGEWQAYLSANKVFADKVMEVINPDEDYVW 195
+YY+ F LWP FHY L L +F R W YL N + ADK++ ++ D+D +W
Sbjct: 75 EYYNQFSNAVLWPAFHYRLDLV-----QFQRPAWDGYLRVNALLADKLLPLLQ-DDDIIW 128
Query: 196 IHDYHLMVLPSFLRKRFHRVKVGFFLHSPFPSSEIYRTLPVRDEILKSLLNSDLIGFHTF 255
IHDYHL+ LRKR ++GFFLH PFP+ EI+ LP D +L+ L + DL+GF T
Sbjct: 129 IHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLGFQTE 188
Query: 256 DYARHFLSSCSRMLGLNYESKRGYIGLDYFGRTVSIKILPVGIHMGQFESIMSLDVTGQK 315
+ FL S + + S + + +G+ ++ P+GI + + K
Sbjct: 189 NDRLAFLDCLSNLTRVTTRSAKSHTA---WGKAFRTEVYPIGIEPKEIAK-QAAGPLPPK 244
Query: 316 VKELKEKFDGKIVILGVDDMDLFKGISLKFLAMGQLLEQHPDLRGKVVLVQITNPARSSG 375
+ +LK + I V+ +D KG+ +FLA LLE++P GK+ QI +R
Sbjct: 245 LAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDV 304
Query: 376 KDVQDLLSDTNRIAEEINLNFGKPGYEPIVIIKEPLSTQDKVPYYAIAECCVVNCVRDGM 435
+ QD+ A IN +G+ G+ P+ + + + + + ++ +V +RDGM
Sbjct: 305 QAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGM 364
Query: 436 NLVPYKYTVSRQGSPVLDRALGVDEKNPPQKKSVIIVSEFIGCSPSLSGAIRVNPWNVDA 495
NLV +Y ++ D NP V+++S+F G + L+ A+ VNP++ D
Sbjct: 365 NLVAKEYVAAQ------------DPANP----GVLVLSQFAGAANELTSALIVNPYDRDE 408
Query: 496 VADAMDSALQMENQEKILRHEKHYKYISSHDVAYWAKSIDQDLER 540
VA A+D AL M E+I RH + I +D+ +W + DL++
Sbjct: 409 VAAALDRALTMSLAERISRHAEMLDVIVKNDINHWQECFISDLKQ 453
>pdb|1GZ5|A Chain A, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|B Chain B, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|C Chain C, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|D Chain D, Trehalose-6-Phosphate Synthase. Otsa
Length = 456
Score = 200 bits (508), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 125/405 (30%), Positives = 202/405 (49%), Gaps = 26/405 (6%)
Query: 136 KYYHGFCKHYLWPLFHYMLPLTASHGARFDRGEWQAYLSANKVFADKVMEVINPDEDYVW 195
+YY+ F LWP FHY L L +F R W YL N + ADK++ ++ D+D +W
Sbjct: 74 EYYNQFSNAVLWPAFHYRLDLV-----QFQRPAWDGYLRVNALLADKLLPLLQ-DDDIIW 127
Query: 196 IHDYHLMVLPSFLRKRFHRVKVGFFLHSPFPSSEIYRTLPVRDEILKSLLNSDLIGFHTF 255
IHDYHL+ LRKR ++GFFLH PFP+ EI+ LP D +L+ L + DL+GF T
Sbjct: 128 IHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLGFQTE 187
Query: 256 DYARHFLSSCSRMLGLNYESKRGYIGLDYFGRTVSIKILPVGIHMGQFESIMSLDVTGQK 315
+ FL S + + S + + +G+ ++ P+GI + + K
Sbjct: 188 NDRLAFLDCLSNLTRVTTRSAKSHTA---WGKAFRTEVYPIGIEPKEIAK-QAAGPLPPK 243
Query: 316 VKELKEKFDGKIVILGVDDMDLFKGISLKFLAMGQLLEQHPDLRGKVVLVQITNPARSSG 375
+ +LK + I V+ +D KG+ +FLA LLE++P GK+ QI +R
Sbjct: 244 LAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDV 303
Query: 376 KDVQDLLSDTNRIAEEINLNFGKPGYEPIVIIKEPLSTQDKVPYYAIAECCVVNCVRDGM 435
+ QD+ A IN +G+ G+ P+ + + + + ++ +V +RDG
Sbjct: 304 QAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLXKIFRYSDVGLVTPLRDGX 363
Query: 436 NLVPYKYTVSRQGSPVLDRALGVDEKNPPQKKSVIIVSEFIGCSPSLSGAIRVNPWNVDA 495
NLV +Y ++ D NP V+++S+F G + L+ A+ VNP++ D
Sbjct: 364 NLVAKEYVAAQ------------DPANP----GVLVLSQFAGAANELTSALIVNPYDRDE 407
Query: 496 VADAMDSALQMENQEKILRHEKHYKYISSHDVAYWAKSIDQDLER 540
VA A+D AL E+I RH + I +D+ +W + DL++
Sbjct: 408 VAAALDRALTXSLAERISRHAEXLDVIVKNDINHWQECFISDLKQ 452
>pdb|4F96|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp
pdb|4F96|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp
pdb|4F97|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Validoxylamine A 7'-Phosphate
pdb|4F97|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Validoxylamine A 7'-Phosphate
pdb|4F9F|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|C Chain C, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|D Chain D, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|E Chain E, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|F Chain F, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|3VDM|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase
Which Catalyzes Non-Glycosidic C-N Coupling In
Validamycin A Biosynthesis
pdb|3VDM|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase
Which Catalyzes Non-Glycosidic C-N Coupling In
Validamycin A Biosynthesis
pdb|3VDN|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp
Length = 497
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/333 (23%), Positives = 144/333 (43%), Gaps = 36/333 (10%)
Query: 166 RGEWQAYLSANKVFADKVMEVINPDEDYVW-IHDYHLMVLPSFLRKRFHRVKVGFFLHSP 224
R W + + FAD +++ D V+ +HDY L+ +P+ LR++ + F+H P
Sbjct: 125 REGWADFGRFTRDFADAILKSSAQSADPVYLVHDYQLVGVPALLREQRPDAPILLFVHIP 184
Query: 225 FPSSEIYRTLP--VRDEILKSLLNSDLIGFHTFDYARHFLSSCSRMLGLNYESKRGYIGL 282
+PS++ +R LP +R IL +L + IGF + R+FL S + +L + R + +
Sbjct: 185 WPSADYWRILPKEIRTGILHGMLPATTIGFFADRWCRNFLESVADLLP-DARIDREAMTV 243
Query: 283 DYFGRTVSIKILPVGIHMGQFESIMSLDVTGQKVKE-LKEKFDGKIVILGVDDMDLFKGI 341
++ G ++ +P+G S ++LD ++ E ++E DG +++ D K
Sbjct: 244 EWRGHRTRLRTMPLGY------SPLTLDGRNPQLPEGIEEWADGHRLVVHSGRTDPIKNA 297
Query: 342 SLKFLAMGQLLEQHPDLRGKVVLVQITNPARSSGKDVQDLLSDTNRIAEEINLNFGKPGY 401
A L + L +LV++ NP R D + E N G
Sbjct: 298 ERAVRAF-VLAARGGGLEKTRMLVRM-NPNRLYVPANADYVHRVETAVAEANAELGS--- 352
Query: 402 EPIVIIKEPLSTQDKVPYYAIAECCVVNCVRDGMNLVPYKYTVSRQGSPVLDRALGVDEK 461
V I + + A+ + N DG NL ++ +P+++
Sbjct: 353 -DTVRIDNDNDVNHTIACFRRADLLIFNSTVDGQNLSTFE-------APLVN-------- 396
Query: 462 NPPQKKSVIIVSEFIGCSPSLSGAIR-VNPWNV 493
++ + +I+SE G + L R VNP+++
Sbjct: 397 ---ERDADVILSETCGAAEVLGEYCRSVNPFDL 426
>pdb|3T5T|A Chain A, Vall From Streptomyces Hygroscopicus In Apo Form
pdb|3T5T|B Chain B, Vall From Streptomyces Hygroscopicus In Apo Form
Length = 496
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/333 (23%), Positives = 144/333 (43%), Gaps = 36/333 (10%)
Query: 166 RGEWQAYLSANKVFADKVMEVINPDEDYVW-IHDYHLMVLPSFLRKRFHRVKVGFFLHSP 224
R W + + FAD +++ D V+ +HDY L+ +P+ LR++ + F+H P
Sbjct: 124 REGWADFGRFTRDFADAILKSSAQSADPVYLVHDYQLVGVPALLREQRPDAPILLFVHIP 183
Query: 225 FPSSEIYRTLP--VRDEILKSLLNSDLIGFHTFDYARHFLSSCSRMLGLNYESKRGYIGL 282
+PS++ +R LP +R IL +L + IGF + R+FL S + +L + R + +
Sbjct: 184 WPSADYWRILPKEIRTGILHGMLPATTIGFFADRWCRNFLESVADLLP-DARIDREAMTV 242
Query: 283 DYFGRTVSIKILPVGIHMGQFESIMSLDVTGQKVKE-LKEKFDGKIVILGVDDMDLFKGI 341
++ G ++ +P+G S ++LD ++ E ++E DG +++ D K
Sbjct: 243 EWRGHRTRLRTMPLGY------SPLTLDGRNPQLPEGIEEWADGHRLVVHSGRTDPIKNA 296
Query: 342 SLKFLAMGQLLEQHPDLRGKVVLVQITNPARSSGKDVQDLLSDTNRIAEEINLNFGKPGY 401
A L + L +LV++ NP R D + E N G
Sbjct: 297 ERAVRAF-VLAARGGGLEKTRMLVRM-NPNRLYVPANADYVHRVETAVAEANAELGS--- 351
Query: 402 EPIVIIKEPLSTQDKVPYYAIAECCVVNCVRDGMNLVPYKYTVSRQGSPVLDRALGVDEK 461
V I + + A+ + N DG NL ++ +P+++
Sbjct: 352 -DTVRIDNDNDVNHTIACFRRADLLIFNSTVDGQNLSTFE-------APLVN-------- 395
Query: 462 NPPQKKSVIIVSEFIGCSPSLSGAIR-VNPWNV 493
++ + +I+SE G + L R VNP+++
Sbjct: 396 ---ERDADVILSETCGAAEVLGEYCRSVNPFDL 425
>pdb|3T7D|A Chain A, Vall From Streptomyces Hygroscopicus In Complex With
Trehalose
pdb|3T7D|B Chain B, Vall From Streptomyces Hygroscopicus In Complex With
Trehalose
Length = 497
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 77/333 (23%), Positives = 139/333 (41%), Gaps = 36/333 (10%)
Query: 166 RGEWQAYLSANKVFADKVMEVINPDEDYVW-IHDYHLMVLPSFLRKRFHRVKVGFFLHSP 224
R W + + FAD +++ D V+ +HDY L+ +P+ LR++ + F+H P
Sbjct: 125 REGWADFGRFTRDFADAILKSSAQSADPVYLVHDYQLVGVPALLREQRPDAPILLFVHIP 184
Query: 225 FPSSEIYRTLP--VRDEILKSLLNSDLIGFHTFDYARHFLSSCSRMLGLNYESKRGYIGL 282
+PS++ +R LP +R IL L + IGF + R+FL S + +L + R +
Sbjct: 185 WPSADYWRILPKEIRTGILHGXLPATTIGFFADRWCRNFLESVADLLP-DARIDREAXTV 243
Query: 283 DYFGRTVSIKILPVGIHMGQFESIMSLDVTGQKVKE-LKEKFDGKIVILGVDDMDLFKGI 341
++ G ++ P+G S ++LD ++ E ++E DG +++ D K
Sbjct: 244 EWRGHRTRLRTXPLGY------SPLTLDGRNPQLPEGIEEWADGHRLVVHSGRTDPIKNA 297
Query: 342 SLKFLAMGQLLEQHPDLRGKVVLVQITNPARSSGKDVQDLLSDTNRIAEEINLNFGKPGY 401
A L + L LV+ NP R D + E N G
Sbjct: 298 ERAVRAF-VLAARGGGLEKTRXLVR-XNPNRLYVPANADYVHRVETAVAEANAELGS--- 352
Query: 402 EPIVIIKEPLSTQDKVPYYAIAECCVVNCVRDGMNLVPYKYTVSRQGSPVLDRALGVDEK 461
V I + + A+ + N DG NL ++ +P+++
Sbjct: 353 -DTVRIDNDNDVNHTIACFRRADLLIFNSTVDGQNLSTFE-------APLVN-------- 396
Query: 462 NPPQKKSVIIVSEFIGCSPSLSGAIR-VNPWNV 493
++ + +I+SE G + L R VNP+++
Sbjct: 397 ---ERDADVILSETCGAAEVLGEYCRSVNPFDL 426
>pdb|1U02|A Chain A, Crystal Structure Of Trehalose-6-Phosphate Phosphatase
Related Protein
Length = 239
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 110/257 (42%), Gaps = 31/257 (12%)
Query: 587 LILLDYDGTVMP--QTSEDKRPSTEVLSILNDLCNDPKNAVFIVSGRGKDSLGNWFSGVE 644
LI LDYDGT++P E+ +LS+++DL + +IV+GR + + +
Sbjct: 3 LIFLDYDGTLVPIIXNPEESYADAGLLSLISDL--KERFDTYIVTGRSPEEISRFLP--L 58
Query: 645 KLGLSAEHGYFTRWSKNSAWEICSLTRDFDWKEIAEPVMKLYTETTDGSFIEDKETAIVW 704
+ HG ++ + + S + I E + + G I K A+++
Sbjct: 59 DINXICYHGACSKINGQIVYNNGSDRFLGVFDRIYEDT-RSWVSDFPGLRIYRKNLAVLY 117
Query: 705 HHQHADPHFGSCQAKELLDHLENVLANEPVVVKRGQHIVEVKPQGVSKGIVVKNLISTMR 764
H G+ +L +E + V G+ I+E++ GV+KG ++++
Sbjct: 118 HLGLX----GADXKPKLRSRIEEIARIFGVETYYGKXIIELRVPGVNKGSAIRSV----- 168
Query: 765 SRGKSPDFVLCIGDDRSDEDMFESIEQAVADPSVPGIAEVFACTVGQKPSMAKYYLDDTA 824
RG+ P + GDD +DE FE+ + A+ VG+ + AK+++ D
Sbjct: 169 -RGERP--AIIAGDDATDEAAFEANDDAL------------TIKVGEGETHAKFHVADYI 213
Query: 825 EVINLLEGLATESVHSK 841
E +L+ + V K
Sbjct: 214 EXRKILKFIEXLGVQKK 230
>pdb|4A3H|A Chain A, 2',4' Dinitrophenyl-2-Deoxy-2-Fluro-B-D-Cellobioside
Complex Of The Endoglucanase Cel5a From Bacillus
Agaradhaerens At 1.6 A Resolution
pdb|5A3H|A Chain A, 2-Deoxy-2-Fluro-B-D-CellobiosylENZYME INTERMEDIATE COMPLEX
Of The Endoglucanase Cel5a From Bacillus Agaradhearans
At 1.8 Angstroms Resolution
pdb|6A3H|A Chain A, 2-Deoxy-2-Fluro-B-D-CellotriosylENZYME INTERMEDIATE
COMPLEX OF THE Endoglucanase Cel5a From Bacillus
Agaradhearans At 1.6 Angstrom Resolution
pdb|7A3H|A Chain A, Native Endoglucanase Cel5a Catalytic Core Domain At 0.95
Angstroms Resolution
pdb|8A3H|A Chain A, Cellobiose-derived Imidazole Complex Of The Endoglucanase
Cel5a From Bacillus Agaradhaerens At 0.97 A Resolution
pdb|1HF6|A Chain A, Endoglucanase Cel5a From Bacillus Agaradhaerens In The
Orthorhombic Crystal Form In Complex With Cellotriose
pdb|1H11|A Chain A, 2-Deoxy-2-Fluro-B-D-CellotriosylENZYME INTERMEDIATE
Complex Of The Endoglucanase Cel5a From Bacillus
Agaradhearans At 1.08 Angstrom Resolution
pdb|1H2J|A Chain A, Endoglucanase Cel5a In Complex With Unhydrolysed And
Covalently Linked 2,4-Dinitrophenyl-2-Deoxy-2-
Fluoro-Cellobioside At 1.15 A Resolution
pdb|1OCQ|A Chain A, Complex Of The Endoglucanase Cel5a From Bacillus
Agaradhearans At 1.08 Angstrom Resolution With
Cellobio-Derived Isofagomine
pdb|1W3K|A Chain A, Endoglucanase Cel5a From Bacillus Agaradhaerens In Complex
With Cellobio Derived-tetrahydrooxazine
pdb|1W3L|A Chain A, Endoglucanase Cel5a From Bacillus Agaradhaerens In Complex
With Cellotri Derived-Tetrahydrooxazine
Length = 303
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 10/132 (7%)
Query: 702 IVWH-HQHADPHFGSCQAKELLDHLENVLANEPVVVKRGQHIVEVKPQG--VSKGIVVKN 758
I WH DP+ +AK+ D + + + P V+ + +P G V+ G +K
Sbjct: 98 IDWHILSDNDPNIYKEEAKDFFDEMSELYGDYPNVIYE----IANEPNGSDVTWGNQIKP 153
Query: 759 LISTMRS--RGKSPDFVLCIGDDRSDEDMFESIEQAVADPSVPGIAEVFACTVGQK-PSM 815
+ R P+ ++ +G +D+ + + +ADP+V +A T GQ
Sbjct: 154 YAEEVIPIIRNNDPNNIIIVGTGTWSQDVHHAADNQLADPNVMYAFHFYAGTHGQNLRDQ 213
Query: 816 AKYYLDDTAEVI 827
Y LD A +
Sbjct: 214 VDYALDQGAAIF 225
>pdb|1H5V|A Chain A, Thiopentasaccharide Complex Of The Endoglucanase Cel5a
From Bacillus Agaradharens At 1.1 A Resolution In The
Tetragonal Crystal Form
Length = 304
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 10/132 (7%)
Query: 702 IVWH-HQHADPHFGSCQAKELLDHLENVLANEPVVVKRGQHIVEVKPQG--VSKGIVVKN 758
I WH DP+ +AK+ D + + + P V+ + +P G V+ G +K
Sbjct: 98 IDWHILSDNDPNIYKEEAKDFFDEMSELYGDYPNVIYE----IANEPNGSDVTWGNQIKP 153
Query: 759 LISTMRS--RGKSPDFVLCIGDDRSDEDMFESIEQAVADPSVPGIAEVFACTVGQK-PSM 815
+ R P+ ++ +G +D+ + + +ADP+V +A T GQ
Sbjct: 154 YAEEVIPIIRNNDPNNIIIVGTGTWSQDVHHAADNQLADPNVMYAFHFYAGTHGQNLRDQ 213
Query: 816 AKYYLDDTAEVI 827
Y LD A +
Sbjct: 214 VDYALDQGAAIF 225
>pdb|1A3H|A Chain A, Endoglucanase Cel5a From Bacillus Agaradherans At 1.6a
Resolution
pdb|2A3H|A Chain A, Cellobiose Complex Of The Endoglucanase Cel5a From
Bacillus Agaradherans At 2.0 A Resolution
pdb|3A3H|A Chain A, Cellotriose Complex Of The Endoglucanase Cel5a From
Bacillus Agaradherans At 1.6 A Resolution
Length = 300
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 10/132 (7%)
Query: 702 IVWH-HQHADPHFGSCQAKELLDHLENVLANEPVVVKRGQHIVEVKPQG--VSKGIVVKN 758
I WH DP+ +AK+ D + + + P V+ + +P G V+ G +K
Sbjct: 95 IDWHILSDNDPNIYKEEAKDFFDEMSELYGDYPNVIYE----IANEPNGSDVTWGNQIKP 150
Query: 759 LISTMRS--RGKSPDFVLCIGDDRSDEDMFESIEQAVADPSVPGIAEVFACTVGQK-PSM 815
+ R P+ ++ +G +D+ + + +ADP+V +A T GQ
Sbjct: 151 YAEEVIPIIRNNDPNNIIIVGTGTWSQDVHHAADNQLADPNVMYAFHFYAGTHGQNLRDQ 210
Query: 816 AKYYLDDTAEVI 827
Y LD A +
Sbjct: 211 VDYALDQGAAIF 222
>pdb|1QHZ|A Chain A, Native Tetragonal Structure Of The Endoglucanase Cel5a
From Bacillus Agaradhaerens
pdb|1QI0|A Chain A, Endoglucanase Cel5a From Bacillus Agaradhaerens In The
Tetragonal Crystal Form In Complex With Cellobiose
pdb|1QI2|A Chain A, Endoglucanase Cel5a From Bacillus Agaradhaerens In The
Tetragonal Crystal Form In Complex With
2',4'-Dinitrophenyl 2-Deoxy-2-Fluoro-B- D-Cellotrioside
pdb|1E5J|A Chain A, Endoglucanase Cel5a From Bacillus Agaradhaerens In The
Tetragonal Crystal Form In Complex With
Methyl-4ii-S-Alpha-Cellobiosyl-4ii-Thio
Beta-Cellobioside
pdb|2V38|A Chain A, Family 5 Endoglucanase Cel5a From Bacillus Agaradhaerens
In Complex With Cellobio-Derived Noeuromycin
Length = 305
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 10/132 (7%)
Query: 702 IVWH-HQHADPHFGSCQAKELLDHLENVLANEPVVVKRGQHIVEVKPQG--VSKGIVVKN 758
I WH DP+ +AK+ D + + + P V+ + +P G V+ G +K
Sbjct: 98 IDWHILSDNDPNIYKEEAKDFFDEMSELYGDYPNVIYE----IANEPNGSDVTWGNQIKP 153
Query: 759 LISTMRS--RGKSPDFVLCIGDDRSDEDMFESIEQAVADPSVPGIAEVFACTVGQK-PSM 815
+ R P+ ++ +G +D+ + + +ADP+V +A T GQ
Sbjct: 154 YAEEVIPIIRNNDPNNIIIVGTGTWSQDVHHAADNQLADPNVMYAFHFYAGTHGQNLRDQ 213
Query: 816 AKYYLDDTAEVI 827
Y LD A +
Sbjct: 214 VDYALDQGAAIF 225
>pdb|1LF1|A Chain A, Crystal Structure Of Cel5 From Alkalophilic Bacillus Sp
Length = 308
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 63/172 (36%), Gaps = 32/172 (18%)
Query: 682 VMKLYTETTDGSFIED-------KETA-----------IVWH-HQHADPHFGSCQAKELL 722
V + T+ G +I+D KET I WH DP+ +AK+
Sbjct: 60 VFRAAMYTSSGGYIDDPSVKEKVKETVEAAIDLGIYVIIDWHILSDNDPNIYKEEAKDFF 119
Query: 723 DHLENVLANEPVVVKRGQHIVEVKPQGVSKGIVVKNLISTMRS------RGKSPDFVLCI 776
D + + + P V I E+ + + N I R P+ ++ +
Sbjct: 120 DEMSELYGDYPNV------IYEIANEPNGSDVTWDNQIKPYAEEVIPVIRDNDPNNIVIV 173
Query: 777 GDDRSDEDMFESIEQAVADPSVPGIAEVFACTVGQK-PSMAKYYLDDTAEVI 827
G +D+ + + +ADP+V +A T GQ Y LD A +
Sbjct: 174 GTGTWSQDVHHAADNQLADPNVMYAFHFYAGTHGQNLRDQVDYALDQGAAIF 225
>pdb|3S4L|A Chain A, The Crispr-Associated Cas3 Hd Domain Protein Mj0384 From
Methanocaldococcus Jannaschii
Length = 244
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 11/101 (10%)
Query: 238 DEILKSLLNSDLIGFHTFDYARHFLSSCSRMLGLNYESKRGY----IGLDYFG--RTVSI 291
DE +K L+ IG + Y R ++ +++G +E Y I L FG I
Sbjct: 56 DEFMKILIKLHDIGKASKIYQRAIINDQEKLMGFRHELVSAYYTYHILLKKFGDKNLAFI 115
Query: 292 KILPVGIH-----MGQFESIMSLDVTGQKVKELKEKFDGKI 327
L V +H MGQ ++ ++T + V + +KFDG I
Sbjct: 116 GALTVMLHHEPIIMGQIRNLKKKELTAEVVLDKLKKFDGMI 156
>pdb|3TUU|A Chain A, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
pdb|3TUU|B Chain B, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
pdb|3TUU|C Chain C, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
pdb|3TUU|D Chain D, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
pdb|3TUU|E Chain E, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
pdb|3TUU|F Chain F, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
pdb|3TUU|G Chain G, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
pdb|3TUU|H Chain H, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
Length = 346
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 18/78 (23%)
Query: 708 HADPHFGSCQAKELLDHLENVLANEPVVV-----KRGQHIVEVKPQGVSKGIVVKNLIST 762
H +P++G + L+ H E+VL P V+ + GQ I P GV I T
Sbjct: 146 HINPYYGKTSLEGLVSHFESVLPMGPTVIYNVPSRTGQDI----PPGV---------IHT 192
Query: 763 MRSRGKSPDFVLCIGDDR 780
+ C+G+DR
Sbjct: 193 VAQSANLAGVXECVGNDR 210
>pdb|4AH6|A Chain A, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|B Chain B, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|C Chain C, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|D Chain D, Human Mitochondrial Aspartyl-Trna Synthetase
Length = 617
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 580 YNKTNSRLILLDYDGTVMPQTSEDKRPSTEVLSILNDLCNDPKNAVFIVSG 630
Y + N+ L+L D+DG V +D+ + S+ LC P +V VSG
Sbjct: 35 YRRQNTFLVLRDFDGLVQVIIPQDESAA----SVKKILCEAPVESVVQVSG 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,060,342
Number of Sequences: 62578
Number of extensions: 1193737
Number of successful extensions: 3279
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3253
Number of HSP's gapped (non-prelim): 19
length of query: 854
length of database: 14,973,337
effective HSP length: 107
effective length of query: 747
effective length of database: 8,277,491
effective search space: 6183285777
effective search space used: 6183285777
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)