Query 003043
Match_columns 854
No_of_seqs 119 out of 136
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 11:14:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003043.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003043hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wj7_A Hypothetical protein (R 99.0 1.4E-10 4.7E-15 106.7 5.1 56 22-77 37-96 (104)
2 2dhy_A CUE domain-containing p 97.4 0.0002 7E-09 61.4 6.0 42 21-62 15-57 (67)
3 1wgl_A TOLL-interacting protei 97.4 0.00017 5.7E-09 60.4 5.0 43 20-62 5-48 (59)
4 1z96_A DNA-damage, UBA-domain 97.2 0.00033 1.1E-08 52.9 4.6 39 22-61 2-40 (40)
5 1vg5_A RSGI RUH-014, rhomboid 97.1 0.00058 2E-08 59.4 5.6 44 19-63 24-67 (73)
6 1otr_A Protein CUE2; protein-p 97.1 0.00038 1.3E-08 56.5 3.9 40 23-62 3-43 (49)
7 1ify_A HHR23A, UV excision rep 97.1 0.0004 1.4E-08 55.8 3.8 41 22-63 6-46 (49)
8 2cp9_A EF-TS, EF-TSMT, elongat 97.0 0.00064 2.2E-08 57.9 5.1 43 17-62 5-47 (64)
9 2g3q_A Protein YBL047C; endocy 97.0 0.00074 2.5E-08 52.3 4.5 37 25-62 5-41 (43)
10 2knz_A Ubiquilin-4; cytoplasm, 96.9 0.00074 2.5E-08 55.0 4.2 41 22-63 9-50 (53)
11 2jy5_A Ubiquilin-1; UBA, alter 96.8 0.002 6.7E-08 52.4 5.7 40 22-62 10-50 (52)
12 1wr1_B Ubiquitin-like protein 96.8 0.00089 3.1E-08 55.9 3.6 40 22-62 15-55 (58)
13 2bwb_A Ubiquitin-like protein 96.7 0.0014 4.6E-08 52.2 4.4 39 23-62 6-45 (46)
14 2dah_A Ubiquilin-3; UBA domain 96.7 0.0013 4.4E-08 54.0 4.4 40 22-62 7-47 (54)
15 1wji_A Tudor domain containing 96.5 0.0022 7.4E-08 54.2 4.3 38 24-62 9-46 (63)
16 2di0_A Activating signal coint 96.5 0.0038 1.3E-07 54.3 5.7 45 19-63 7-53 (71)
17 1vej_A Riken cDNA 4931431F19; 96.3 0.0038 1.3E-07 54.5 4.7 41 22-63 27-68 (74)
18 2dna_A Unnamed protein product 96.0 0.0059 2E-07 52.5 4.3 41 22-63 17-58 (67)
19 2dak_A Ubiquitin carboxyl-term 95.8 0.0059 2E-07 51.1 3.8 38 24-62 9-46 (63)
20 2ekk_A UBA domain from E3 ubiq 95.7 0.0099 3.4E-07 46.9 4.4 40 21-62 6-45 (47)
21 2cwb_A Chimera of immunoglobul 95.6 0.0089 3.1E-07 55.6 4.1 41 22-63 64-105 (108)
22 1veg_A NEDD8 ultimate buster-1 95.5 0.01 3.6E-07 52.9 4.2 38 24-62 29-66 (83)
23 1wiv_A UBP14, ubiquitin-specif 95.5 0.011 3.7E-07 51.2 4.1 39 23-62 28-66 (73)
24 1dv0_A DNA repair protein HHR2 95.2 0.017 5.7E-07 46.1 3.9 40 23-63 3-42 (47)
25 2cpw_A CBL-interacting protein 95.1 0.038 1.3E-06 46.6 6.1 37 25-62 20-57 (64)
26 2qsf_X RAD23, UV excision repa 95.0 0.019 6.4E-07 57.3 4.5 46 17-63 123-168 (171)
27 2ooa_A E3 ubiquitin-protein li 94.6 0.03 1E-06 46.1 4.1 41 21-62 8-48 (52)
28 2dag_A Ubiquitin carboxyl-term 94.5 0.03 1E-06 48.6 4.1 40 22-62 7-47 (74)
29 2dai_A Ubadc1, ubiquitin assoc 94.4 0.031 1.1E-06 49.6 4.1 39 23-62 28-66 (83)
30 1whc_A RSGI RUH-027, UBA/UBX 3 94.4 0.019 6.5E-07 48.4 2.5 37 25-62 10-47 (64)
31 2dkl_A Trinucleotide repeat co 94.1 0.046 1.6E-06 48.7 4.5 37 25-62 22-58 (85)
32 2d9s_A CBL E3 ubiquitin protei 93.5 0.071 2.4E-06 44.0 4.3 40 22-62 7-46 (53)
33 2qho_B E3 ubiquitin-protein li 93.4 0.089 3.1E-06 42.9 4.6 45 17-64 5-50 (53)
34 2ejs_A Autocrine motility fact 93.0 0.084 2.9E-06 44.3 4.1 42 22-64 11-53 (58)
35 2ekf_A Ancient ubiquitous prot 92.7 0.13 4.5E-06 43.6 4.8 42 22-64 11-53 (61)
36 1vdl_A Ubiquitin carboxyl-term 92.7 0.12 4E-06 45.5 4.7 41 22-62 22-63 (80)
37 3k9o_A Ubiquitin-conjugating e 92.6 0.077 2.6E-06 53.2 4.1 40 22-62 161-200 (201)
38 2lva_A Ubiquitin carboxyl-term 91.7 0.023 7.8E-07 54.0 0.0 46 17-62 11-57 (129)
39 2lbc_A Ubiquitin carboxyl-term 92.5 0.1 3.5E-06 48.7 4.4 39 23-62 77-115 (126)
40 2juj_A E3 ubiquitin-protein li 92.3 0.13 4.4E-06 42.8 4.1 41 21-62 4-44 (56)
41 4g3o_A E3 ubiquitin-protein li 92.1 0.091 3.1E-06 44.1 3.1 44 19-63 12-56 (58)
42 1p3q_Q VPS9P, vacuolar protein 91.9 0.069 2.3E-06 44.3 2.2 40 23-62 11-51 (54)
43 2crn_A Ubash3A protein; compac 91.8 0.062 2.1E-06 45.5 1.9 37 25-62 10-47 (64)
44 2dal_A Protein KIAA0794; FAS a 91.6 0.28 9.4E-06 41.1 5.6 47 16-62 7-53 (62)
45 1aip_C EF-TS, elongation facto 91.5 0.14 4.8E-06 52.0 4.4 39 24-62 3-41 (196)
46 1oqy_A HHR23A, UV excision rep 91.4 0.13 4.3E-06 56.5 4.2 42 21-63 165-206 (368)
47 1oqy_A HHR23A, UV excision rep 91.2 0.17 5.9E-06 55.4 5.0 45 17-62 318-362 (368)
48 1xb2_B EF-TS, elongation facto 91.1 0.14 4.7E-06 54.8 4.1 39 24-62 4-42 (291)
49 3e46_A Ubiquitin-conjugating e 90.9 0.15 5.2E-06 53.3 4.0 41 21-62 212-252 (253)
50 4ae4_A Ubiquitin-associated pr 90.7 0.23 7.8E-06 46.6 4.6 38 24-62 76-113 (118)
51 3e21_A HFAF1, FAS-associated f 89.6 0.27 9.2E-06 39.3 3.6 40 23-62 4-44 (45)
52 1vek_A UBP14, ubiquitin-specif 89.2 0.4 1.4E-05 42.5 4.7 40 22-62 27-67 (84)
53 1v92_A NSFL1 cofactor P47; 3-h 89.0 0.41 1.4E-05 37.0 4.1 40 23-62 4-43 (46)
54 1tr8_A Conserved protein (MTH1 88.9 0.32 1.1E-05 44.7 4.0 36 25-60 66-101 (102)
55 1wgn_A UBAP1, ubiquitin associ 88.2 0.36 1.2E-05 41.1 3.5 44 18-62 13-56 (63)
56 2dam_A ETEA protein; KIAA0887, 87.0 0.88 3E-05 38.7 5.3 45 18-62 12-57 (67)
57 2oo9_A E3 ubiquitin-protein li 86.9 0.65 2.2E-05 37.4 4.1 38 24-62 4-41 (46)
58 4ae4_A Ubiquitin-associated pr 84.0 0.95 3.2E-05 42.5 4.5 43 19-62 3-45 (118)
59 2lbc_A Ubiquitin carboxyl-term 79.7 1.1 3.8E-05 41.7 3.3 37 25-62 4-41 (126)
60 3avx_A Elongation factor TS, e 78.7 0.34 1.2E-05 60.5 -0.7 36 26-61 7-42 (1289)
61 2cp8_A NEXT to BRCA1 gene 1 pr 78.2 3.3 0.00011 34.3 5.2 39 23-62 8-47 (54)
62 1ufz_A Hypothetical protein BA 72.7 2.2 7.6E-05 38.1 3.0 38 26-63 36-75 (83)
63 2l3n_A DNA-binding protein RAP 67.2 13 0.00043 33.2 6.6 42 21-62 8-52 (104)
64 2pwq_A Ubiquitin conjugating e 61.1 1.7 5.9E-05 44.3 0.0 39 23-62 176-214 (216)
65 2dzl_A Protein FAM100B; UBA-li 60.7 9.1 0.00031 32.4 4.4 37 26-62 19-55 (66)
66 2gpi_A Conserved hypothetical 52.6 5.4 0.00018 36.1 1.7 39 30-68 40-81 (91)
67 2jz1_A Protein doublesex; sex 42.6 12 0.00042 33.1 2.3 39 24-62 9-50 (80)
68 1tte_A Ubiquitin-conjugating e 40.2 17 0.00059 37.0 3.4 38 24-62 169-211 (215)
69 2cos_A Serine/threonine protei 33.0 34 0.0012 28.5 3.3 40 22-62 7-47 (54)
70 1nri_A Hypothetical protein HI 32.2 15 0.00051 38.6 1.5 46 25-70 245-290 (306)
71 1zv1_A Doublesex protein; UBA 31.9 24 0.00081 30.2 2.3 39 24-62 9-50 (65)
72 1x4c_A Splicing factor, argini 30.1 46 0.0016 28.9 4.0 15 36-50 26-40 (108)
73 2dk8_A DNA-directed RNA polyme 30.0 18 0.00062 32.1 1.4 52 18-71 9-65 (81)
74 1aua_A Phosphatidylinositol tr 27.3 50 0.0017 33.9 4.3 45 18-62 24-75 (296)
75 1oai_A Nuclear RNA export fact 26.2 65 0.0022 26.7 4.0 39 22-60 5-43 (59)
76 1olm_A SEC14-like protein 2; l 25.6 61 0.0021 34.8 4.8 45 18-62 6-58 (403)
77 3q8g_A CRAL-TRIO domain-contai 20.9 80 0.0027 33.3 4.5 45 18-62 33-84 (320)
78 3izq_1 HBS1P, elongation facto 20.2 34 0.0012 39.5 1.5 32 31-62 45-76 (611)
No 1
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.03 E-value=1.4e-10 Score=106.74 Aligned_cols=56 Identities=29% Similarity=0.373 Sum_probs=50.1
Q ss_pred cchHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHhhhcCC----Ccceeeccccccc
Q 003043 22 AGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQD----PFHEVKSKRDKRK 77 (854)
Q Consensus 22 ~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~av~rLl~q~----~~~EVkkKr~kkK 77 (854)
++++++|+.|+|++|++++++..||.+||+|+++||.+|+++. .|++|+|||.+.+
T Consensus 37 ~d~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~~~~~~W~~~~kKk~~~~ 96 (104)
T 1wj7_A 37 ADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKKKGVSG 96 (104)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCSSSCSSCSSCCCCCCSSS
T ss_pred ccHHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCcCCceeeecccccccC
Confidence 5789999999999999999999999999999999999999874 6999997664433
No 2
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.41 E-value=0.0002 Score=61.41 Aligned_cols=42 Identities=14% Similarity=0.198 Sum_probs=40.1
Q ss_pred CcchHHHHHhhhhcc-CCChHHHHHHHhhcCCCHHHHHHhhhc
Q 003043 21 PAGSRKIVQSLKEIV-NCPESEIYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 21 p~~~rk~V~~ikEi~-~~seedi~~aL~ecn~D~n~av~rLl~ 62 (854)
-.++++.|+.||||| +...+.|.++|+.|++|++.||+.||.
T Consensus 15 ~~~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ 57 (67)
T 2dhy_A 15 RLEFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQ 57 (67)
T ss_dssp CCCSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 368999999999999 999999999999999999999999996
No 3
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=97.38 E-value=0.00017 Score=60.40 Aligned_cols=43 Identities=19% Similarity=0.303 Sum_probs=41.4
Q ss_pred CCcchHHHHHhhhhcc-CCChHHHHHHHhhcCCCHHHHHHhhhc
Q 003043 20 IPAGSRKIVQSLKEIV-NCPESEIYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 20 ip~~~rk~V~~ikEi~-~~seedi~~aL~ecn~D~n~av~rLl~ 62 (854)
.|.-+++.|+.|||+| +.+++-|-.+|+.|++|++.||+.||+
T Consensus 5 ~~~~~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 5 SSGCSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp SSSSCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 6778899999999999 999999999999999999999999998
No 4
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=97.22 E-value=0.00033 Score=52.87 Aligned_cols=39 Identities=23% Similarity=0.202 Sum_probs=35.8
Q ss_pred cchHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHhhh
Q 003043 22 AGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLL 61 (854)
Q Consensus 22 ~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~av~rLl 61 (854)
++.+++|++|.++ |.+++++..||+.|++|++.|++.|+
T Consensus 2 ~~~~~~i~~L~~m-Gf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 2 PGLNSKIAQLVSM-GFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp -CHHHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred chHHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 4678899999999 99999999999999999999999875
No 5
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=97.11 E-value=0.00058 Score=59.44 Aligned_cols=44 Identities=25% Similarity=0.262 Sum_probs=40.3
Q ss_pred cCCcchHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHhhhcC
Q 003043 19 SIPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQ 63 (854)
Q Consensus 19 ~ip~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~av~rLl~q 63 (854)
......+++|++|.|| |++++++..||+.|++|++.|++.|+..
T Consensus 24 ~~~~~~ee~I~~L~eM-GF~r~~a~~AL~~~~~nve~Ave~Ll~~ 67 (73)
T 1vg5_A 24 GRVAASEEQIQKLVAM-GFDRTQVEVALAAADDDLTVAVEILMSQ 67 (73)
T ss_dssp CCSCCCHHHHHHHHTT-TCCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred cCCcccHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 3556789999999998 9999999999999999999999999973
No 6
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=97.08 E-value=0.00038 Score=56.48 Aligned_cols=40 Identities=20% Similarity=0.227 Sum_probs=38.3
Q ss_pred chHHHHHhhhhcc-CCChHHHHHHHhhcCCCHHHHHHhhhc
Q 003043 23 GSRKIVQSLKEIV-NCPESEIYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 23 ~~rk~V~~ikEi~-~~seedi~~aL~ecn~D~n~av~rLl~ 62 (854)
+.+++|+.|.||| .++.++|-.+|+.|+||.++||+-||+
T Consensus 3 ~~e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~ 43 (49)
T 1otr_A 3 DHESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLK 43 (49)
T ss_dssp SHHHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 5689999999999 999999999999999999999999997
No 7
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.05 E-value=0.0004 Score=55.77 Aligned_cols=41 Identities=17% Similarity=0.323 Sum_probs=37.8
Q ss_pred cchHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHhhhcC
Q 003043 22 AGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQ 63 (854)
Q Consensus 22 ~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~av~rLl~q 63 (854)
...+++|++|.+| |++++++..||+.|++|++.|++.|+++
T Consensus 6 ~~~~~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~e~L~~g 46 (49)
T 1ify_A 6 SEYETMLTEIMSM-GYERERVVAALRASYNNPHRAVEYLLTG 46 (49)
T ss_dssp HHHHHHHHHHHHT-TCCHHHHHHHHHTTTSCSHHHHHHHHHC
T ss_pred ccCHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 3578899999999 9999999999999999999999999973
No 8
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=97.04 E-value=0.00064 Score=57.95 Aligned_cols=43 Identities=16% Similarity=0.139 Sum_probs=37.7
Q ss_pred cccCCcchHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHhhhc
Q 003043 17 ISSIPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 17 ~~~ip~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~av~rLl~ 62 (854)
...|+. +.|+.|||.+|.+..||..||.|||+|.++||..|-+
T Consensus 5 ~~~it~---~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr~ 47 (64)
T 2cp9_A 5 SSGSSK---ELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHK 47 (64)
T ss_dssp SSCCCC---HHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred cccCCH---HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 445654 7899999999999999999999999999999997744
No 9
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=96.97 E-value=0.00074 Score=52.34 Aligned_cols=37 Identities=32% Similarity=0.421 Sum_probs=35.1
Q ss_pred HHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHhhhc
Q 003043 25 RKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 25 rk~V~~ikEi~~~seedi~~aL~ecn~D~n~av~rLl~ 62 (854)
+++|++|.+| |.+++++..||+.|++|++.|++.|++
T Consensus 5 e~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 5 SLAVEELSGM-GFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHHTT-TSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 6889999998 999999999999999999999999987
No 10
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=96.90 E-value=0.00074 Score=55.01 Aligned_cols=41 Identities=20% Similarity=0.230 Sum_probs=37.3
Q ss_pred cchHHHHHhhhhccCC-ChHHHHHHHhhcCCCHHHHHHhhhcC
Q 003043 22 AGSRKIVQSLKEIVNC-PESEIYAMLKECNMDPNEAVNRLLSQ 63 (854)
Q Consensus 22 ~~~rk~V~~ikEi~~~-seedi~~aL~ecn~D~n~av~rLl~q 63 (854)
..++++|++|+|| |+ .++.+..||+.|++|++.||+.|++.
T Consensus 9 ~~~~~~l~~L~~M-GF~~~~~~~~AL~~t~gnve~Ave~L~~~ 50 (53)
T 2knz_A 9 VRFQQQLEQLNSM-GFINREANLQALIATGGDINAAIERLLGS 50 (53)
T ss_dssp HHHHHHHHHHHTT-TCCCHHHHHHHHHHHTSCHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 4678899999999 99 88899999999999999999999973
No 11
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=96.77 E-value=0.002 Score=52.39 Aligned_cols=40 Identities=20% Similarity=0.227 Sum_probs=36.8
Q ss_pred cchHHHHHhhhhccCC-ChHHHHHHHhhcCCCHHHHHHhhhc
Q 003043 22 AGSRKIVQSLKEIVNC-PESEIYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 22 ~~~rk~V~~ikEi~~~-seedi~~aL~ecn~D~n~av~rLl~ 62 (854)
..++++|++|+|| |+ .++.+..||+.|++|++.||+.|+.
T Consensus 10 ~~~~~~l~~L~~M-GF~~~~~~~~AL~~t~gn~e~A~e~L~~ 50 (52)
T 2jy5_A 10 VRFQQQLEQLSAM-GFLNREANLQALIATGGDINAAIERLLG 50 (52)
T ss_dssp TTTHHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred hHHHHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4568999999999 99 7888999999999999999999987
No 12
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=96.76 E-value=0.00089 Score=55.86 Aligned_cols=40 Identities=15% Similarity=0.153 Sum_probs=35.5
Q ss_pred cchHHHHHhhhhccCCC-hHHHHHHHhhcCCCHHHHHHhhhc
Q 003043 22 AGSRKIVQSLKEIVNCP-ESEIYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 22 ~~~rk~V~~ikEi~~~s-eedi~~aL~ecn~D~n~av~rLl~ 62 (854)
..++++|++|++| |.+ ++.+..||+.|++|++.||++|++
T Consensus 15 ~~~~~qi~~L~~M-GF~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 15 ERYEHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHTHHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4578899999999 865 667799999999999999999987
No 13
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=96.73 E-value=0.0014 Score=52.25 Aligned_cols=39 Identities=15% Similarity=0.157 Sum_probs=34.5
Q ss_pred chHHHHHhhhhccCCC-hHHHHHHHhhcCCCHHHHHHhhhc
Q 003043 23 GSRKIVQSLKEIVNCP-ESEIYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 23 ~~rk~V~~ikEi~~~s-eedi~~aL~ecn~D~n~av~rLl~ 62 (854)
.++++|++|++| |.+ ++.+..||+.|++|++.||+.|++
T Consensus 6 ~~~~~i~~L~~M-GF~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 6 RYEHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp HTHHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 467899999999 876 455899999999999999999986
No 14
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.73 E-value=0.0013 Score=54.04 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=36.6
Q ss_pred cchHHHHHhhhhccCCChHH-HHHHHhhcCCCHHHHHHhhhc
Q 003043 22 AGSRKIVQSLKEIVNCPESE-IYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 22 ~~~rk~V~~ikEi~~~seed-i~~aL~ecn~D~n~av~rLl~ 62 (854)
..++++|++|++| |.++++ ++.||+.|++|++.||++|+.
T Consensus 7 ~~~~~~l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~~ 47 (54)
T 2dah_A 7 GHFQVQLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQ 47 (54)
T ss_dssp CSSHHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4679999999999 998876 699999999999999999996
No 15
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.49 E-value=0.0022 Score=54.20 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=35.7
Q ss_pred hHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHhhhc
Q 003043 24 SRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 24 ~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~av~rLl~ 62 (854)
-+++|++|.+| |++++++..||+.|++|++.|++.|++
T Consensus 9 ~~~~I~~L~~M-GF~~~~a~~AL~~~~~nve~A~e~L~~ 46 (63)
T 1wji_A 9 DEKALKHITEM-GFSKEASRQALMDNGNNLEAALNVLLT 46 (63)
T ss_dssp CHHHHHHHHTT-TCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 36889999998 999999999999999999999999997
No 16
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=96.46 E-value=0.0038 Score=54.29 Aligned_cols=45 Identities=20% Similarity=0.401 Sum_probs=41.9
Q ss_pred cCC-cchHHHHHhhhhcc-CCChHHHHHHHhhcCCCHHHHHHhhhcC
Q 003043 19 SIP-AGSRKIVQSLKEIV-NCPESEIYAMLKECNMDPNEAVNRLLSQ 63 (854)
Q Consensus 19 ~ip-~~~rk~V~~ikEi~-~~seedi~~aL~ecn~D~n~av~rLl~q 63 (854)
.|+ ++.+.+|.+|||+| ++.+.=|.+.|+.+|.|++.+|+.||+.
T Consensus 7 ~~~~~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~ 53 (71)
T 2di0_A 7 GMCGVELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEE 53 (71)
T ss_dssp CCSSHHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 344 68899999999999 9999999999999999999999999994
No 17
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.27 E-value=0.0038 Score=54.53 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=36.5
Q ss_pred cchHHHHHhhhhccCC-ChHHHHHHHhhcCCCHHHHHHhhhcC
Q 003043 22 AGSRKIVQSLKEIVNC-PESEIYAMLKECNMDPNEAVNRLLSQ 63 (854)
Q Consensus 22 ~~~rk~V~~ikEi~~~-seedi~~aL~ecn~D~n~av~rLl~q 63 (854)
..++++|++|+|| |. .++.++.||+.|++|++.||++|+..
T Consensus 27 ~~ye~qi~qL~eM-GF~dr~~~~~AL~~t~Gnve~Ave~L~~~ 68 (74)
T 1vej_A 27 GRYQQELEELKAL-GFANRDANLQALVATDGDIHAAIEMLLGA 68 (74)
T ss_dssp TTSHHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 4578999999999 86 46888999999999999999999973
No 18
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.98 E-value=0.0059 Score=52.50 Aligned_cols=41 Identities=20% Similarity=0.165 Sum_probs=35.0
Q ss_pred cchHHHHHhhhhccCCC-hHHHHHHHhhcCCCHHHHHHhhhcC
Q 003043 22 AGSRKIVQSLKEIVNCP-ESEIYAMLKECNMDPNEAVNRLLSQ 63 (854)
Q Consensus 22 ~~~rk~V~~ikEi~~~s-eedi~~aL~ecn~D~n~av~rLl~q 63 (854)
..++++|++|++| |.+ ++.++.||+.|++|++.||++|++.
T Consensus 17 ~~y~~ql~qL~~M-GF~d~~an~~AL~at~Gnve~Ave~L~~~ 58 (67)
T 2dna_A 17 VRFSKEMECLQAM-GFVNYNANLQALIATDGDTNAAIYKLKSS 58 (67)
T ss_dssp HHTHHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 3578899999998 765 5566999999999999999999973
No 19
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.85 E-value=0.0059 Score=51.14 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=35.9
Q ss_pred hHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHhhhc
Q 003043 24 SRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 24 ~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~av~rLl~ 62 (854)
.+++|++|.+| |++++++..||+.|++|++.|++.|++
T Consensus 9 ~~~~v~~L~~M-GF~~~~a~~AL~~t~~nve~A~e~L~~ 46 (63)
T 2dak_A 9 PEDCVTTIVSM-GFSRDQALKALRATNNSLERAVDWIFS 46 (63)
T ss_dssp CHHHHHHHHHH-TCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred CHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 57889999998 999999999999999999999999997
No 20
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.74 E-value=0.0099 Score=46.94 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=36.1
Q ss_pred CcchHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHhhhc
Q 003043 21 PAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 21 p~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~av~rLl~ 62 (854)
|.-.+++|++|.+| |++++.+..||+.|+ |++.|++.|++
T Consensus 6 ~~~~~~~v~~L~~M-GF~~~~a~~AL~~~~-n~e~A~~~L~~ 45 (47)
T 2ekk_A 6 SGVNQQQLQQLMDM-GFTREHAMEALLNTS-TMEQATEYLLT 45 (47)
T ss_dssp CSSCHHHHHHHHHH-HCCHHHHHHHHHHSC-SHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHc-CCCHHHHHHHHHHcC-CHHHHHHHHHc
Confidence 44568899999998 999999999999997 99999999986
No 21
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=95.57 E-value=0.0089 Score=55.60 Aligned_cols=41 Identities=12% Similarity=0.173 Sum_probs=36.3
Q ss_pred cchHHHHHhhhhccCCC-hHHHHHHHhhcCCCHHHHHHhhhcC
Q 003043 22 AGSRKIVQSLKEIVNCP-ESEIYAMLKECNMDPNEAVNRLLSQ 63 (854)
Q Consensus 22 ~~~rk~V~~ikEi~~~s-eedi~~aL~ecn~D~n~av~rLl~q 63 (854)
..++++|++|+|| |.+ ++.++.||+.|++|++.||++|++.
T Consensus 64 ~~~~~qL~qL~eM-GF~d~~~ni~AL~~t~Gdve~AVe~L~~~ 105 (108)
T 2cwb_A 64 SQWQPQLQQLRDM-GIQDDELSLRALQATGGDIQAALELIFAG 105 (108)
T ss_dssp CTTHHHHHHHHTT-TCCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred cchHHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 3568999999998 875 4799999999999999999999974
No 22
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.51 E-value=0.01 Score=52.87 Aligned_cols=38 Identities=16% Similarity=0.073 Sum_probs=36.3
Q ss_pred hHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHhhhc
Q 003043 24 SRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 24 ~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~av~rLl~ 62 (854)
.+++|++|.+| |++++.+..||+.|++|++.|++.|+.
T Consensus 29 ~ee~I~~Lv~M-GF~~~~A~~AL~~t~gdve~A~e~L~s 66 (83)
T 1veg_A 29 SQESINQLVYM-GFDTVVAEAALRVFGGNVQLAAQTLAH 66 (83)
T ss_dssp CHHHHHHHHHH-SCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 57899999999 999999999999999999999999997
No 23
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=95.48 E-value=0.011 Score=51.21 Aligned_cols=39 Identities=18% Similarity=0.166 Sum_probs=36.4
Q ss_pred chHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHhhhc
Q 003043 23 GSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 23 ~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~av~rLl~ 62 (854)
-.+++|++|.+| |++++.+..||+.|++|++.|++.|++
T Consensus 28 ~~~~~v~~L~~M-GF~~~~a~~AL~~t~~nve~Ave~L~~ 66 (73)
T 1wiv_A 28 IDQSSVDTLLSF-GFAEDVARKALKASGGDIEKATDWVFN 66 (73)
T ss_dssp SCHHHHHHHHHH-TCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 457889999998 999999999999999999999999997
No 24
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=95.17 E-value=0.017 Score=46.13 Aligned_cols=40 Identities=33% Similarity=0.459 Sum_probs=36.5
Q ss_pred chHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHhhhcC
Q 003043 23 GSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQ 63 (854)
Q Consensus 23 ~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~av~rLl~q 63 (854)
.-++.|++|+++ |.++..++.||..|+.|++.|++.|++.
T Consensus 3 ~e~eaI~rL~~m-GF~~~~a~~Al~a~~~n~e~A~~~Lf~~ 42 (47)
T 1dv0_A 3 QEKEAIERLKAL-GFPESLVIQAYFACEKNENLAANFLLSQ 42 (47)
T ss_dssp CCHHHHTTTTTT-TCCHHHHHHHHTTTTSCHHHHHHHTTSC
T ss_pred chHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 457889999888 9999999999999999999999999973
No 25
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.07 E-value=0.038 Score=46.65 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=34.5
Q ss_pred HHHHHhhhhccCCChHHHHHHHhhcCC-CHHHHHHhhhc
Q 003043 25 RKIVQSLKEIVNCPESEIYAMLKECNM-DPNEAVNRLLS 62 (854)
Q Consensus 25 rk~V~~ikEi~~~seedi~~aL~ecn~-D~n~av~rLl~ 62 (854)
+++|++|.+| |++++.+..||+.|++ |++.|++.|++
T Consensus 20 e~~i~~L~~M-GF~~~~a~~AL~~t~~~nve~A~ewL~~ 57 (64)
T 2cpw_A 20 GSALDVLLSM-GFPRARAQKALASTGGRSVQTACDWLFS 57 (64)
T ss_dssp CCHHHHHHHH-TCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4678999887 9999999999999998 99999999997
No 26
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=94.96 E-value=0.019 Score=57.27 Aligned_cols=46 Identities=15% Similarity=0.246 Sum_probs=42.1
Q ss_pred cccCCcchHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHhhhcC
Q 003043 17 ISSIPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQ 63 (854)
Q Consensus 17 ~~~ip~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~av~rLl~q 63 (854)
...+.+.-|++|+.|+++ |++++.++.||..|+.|++.|++.||+.
T Consensus 123 ~i~~tpee~eaI~rL~~m-GF~r~~viqA~~ac~knee~Aan~L~~~ 168 (171)
T 2qsf_X 123 QVDYTPEDDQAISRLCEL-GFERDLVIQVYFACDKNEEAAANILFSD 168 (171)
T ss_dssp CCCCCHHHHHHHHHHHTT-TCCHHHHHHHHHHTTTCHHHHHHHHTTC
T ss_pred cCCCCccHHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 456778889999999998 9999999999999999999999999983
No 27
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=94.62 E-value=0.03 Score=46.06 Aligned_cols=41 Identities=12% Similarity=-0.014 Sum_probs=35.6
Q ss_pred CcchHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHhhhc
Q 003043 21 PAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 21 p~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~av~rLl~ 62 (854)
|....+.|++|.++ |.+.+|+..||+-|++|++.|.+.||+
T Consensus 8 ~~~~~~~Ia~Lm~m-GFsr~~ai~AL~~a~nnve~AaniLle 48 (52)
T 2ooa_A 8 LENVDAKIAKLMGE-GYAFEEVKRALEIAQNNVEVARSILRE 48 (52)
T ss_dssp ---CHHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 45566899999888 999999999999999999999999987
No 28
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.49 E-value=0.03 Score=48.60 Aligned_cols=40 Identities=15% Similarity=0.175 Sum_probs=36.5
Q ss_pred cchHHHHHhhhhccCCChHHHHHHHhhcCC-CHHHHHHhhhc
Q 003043 22 AGSRKIVQSLKEIVNCPESEIYAMLKECNM-DPNEAVNRLLS 62 (854)
Q Consensus 22 ~~~rk~V~~ikEi~~~seedi~~aL~ecn~-D~n~av~rLl~ 62 (854)
.--+++|++|.+| |++++.+..||+.|++ |++.|++.|++
T Consensus 7 ~~~e~~v~~L~~M-GF~~~~a~~AL~~t~n~~ve~A~ewL~~ 47 (74)
T 2dag_A 7 GLDESVIIQLVEM-GFPMDACRKAVYYTGNSGAEAAMNWVMS 47 (74)
T ss_dssp SSCHHHHHHHHHH-SCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHc-CCCHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 3467889999998 9999999999999996 99999999997
No 29
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.43 E-value=0.031 Score=49.61 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=36.3
Q ss_pred chHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHhhhc
Q 003043 23 GSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 23 ~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~av~rLl~ 62 (854)
-.+++|++|.+| |++++.+..||+.|++|++.|++.|++
T Consensus 28 ~~e~~i~~L~~M-GF~~~~a~~AL~~t~~nve~A~ewL~~ 66 (83)
T 2dai_A 28 VDEAALRQLTEM-GFPENRATKALQLNHMSVPQAMEWLIE 66 (83)
T ss_dssp CCHHHHHHHHHH-TCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 357889999998 999999999999999999999999997
No 30
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=94.37 E-value=0.019 Score=48.43 Aligned_cols=37 Identities=22% Similarity=0.251 Sum_probs=34.2
Q ss_pred HHHHHhhhhccCCChHHHHHHHhhc-CCCHHHHHHhhhc
Q 003043 25 RKIVQSLKEIVNCPESEIYAMLKEC-NMDPNEAVNRLLS 62 (854)
Q Consensus 25 rk~V~~ikEi~~~seedi~~aL~ec-n~D~n~av~rLl~ 62 (854)
+++|++|.+| |++++.+..||+.| ++|++.|++.|++
T Consensus 10 ~~~v~~L~~M-GF~~~~a~~AL~~t~~~nve~A~ewLl~ 47 (64)
T 1whc_A 10 LTALESLIEM-GFPRGRAEKALALTGNQGIEAAMDWLME 47 (64)
T ss_dssp CCHHHHHHTT-TCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 4678999887 99999999999999 7999999999997
No 31
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.07 E-value=0.046 Score=48.74 Aligned_cols=37 Identities=24% Similarity=0.474 Sum_probs=35.3
Q ss_pred HHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHhhhc
Q 003043 25 RKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 25 rk~V~~ikEi~~~seedi~~aL~ecn~D~n~av~rLl~ 62 (854)
+++|++|.+| |++++.+..||+.|++|++.|++.|++
T Consensus 22 ~~~I~qL~~M-GF~~~~a~~AL~~~n~n~e~A~ewL~~ 58 (85)
T 2dkl_A 22 SRLIKQLTDM-GFPREPAEEALKSNNMNLDQAMSALLE 58 (85)
T ss_dssp HHHHHHHHHH-TCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 7889999888 999999999999999999999999998
No 32
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=93.55 E-value=0.071 Score=44.05 Aligned_cols=40 Identities=15% Similarity=0.032 Sum_probs=35.0
Q ss_pred cchHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHhhhc
Q 003043 22 AGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 22 ~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~av~rLl~ 62 (854)
...+..|++|.++ |.+.+|+..||.-|++|++.|.+.|++
T Consensus 7 ~~~e~~I~~L~~l-GF~r~~ai~AL~~a~nnve~Aa~iL~e 46 (53)
T 2d9s_A 7 GQLSSEIERLMSQ-GYSYQDIQKALVIAHNNIEMAKNILRE 46 (53)
T ss_dssp SCSHHHHHHHHHH-TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHc-CCCHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3445668888777 999999999999999999999999987
No 33
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=93.42 E-value=0.089 Score=42.91 Aligned_cols=45 Identities=36% Similarity=0.478 Sum_probs=35.4
Q ss_pred cccCCcchHHHHHhhhhcc-CCChHHHHHHHhhcCCCHHHHHHhhhcCC
Q 003043 17 ISSIPAGSRKIVQSLKEIV-NCPESEIYAMLKECNMDPNEAVNRLLSQD 64 (854)
Q Consensus 17 ~~~ip~~~rk~V~~ikEi~-~~seedi~~aL~ecn~D~n~av~rLl~q~ 64 (854)
+..||. +.|.+...++ |.|.+-|+.-|+-+|.|+|+||+-||+.|
T Consensus 5 ~~~vPe---~li~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsRD 50 (53)
T 2qho_B 5 ASVIPE---ELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLSRD 50 (53)
T ss_dssp GGGSCH---HHHHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHHC--
T ss_pred cccCcH---HHHHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHhccc
Confidence 345564 4555555566 99999999999999999999999999854
No 34
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.01 E-value=0.084 Score=44.30 Aligned_cols=42 Identities=10% Similarity=0.185 Sum_probs=38.7
Q ss_pred cchHHHHHhhhhcc-CCChHHHHHHHhhcCCCHHHHHHhhhcCC
Q 003043 22 AGSRKIVQSLKEIV-NCPESEIYAMLKECNMDPNEAVNRLLSQD 64 (854)
Q Consensus 22 ~~~rk~V~~ikEi~-~~seedi~~aL~ecn~D~n~av~rLl~q~ 64 (854)
.....+|.+|+||| ..+.+.|..-|+.++ .++.+++|||++.
T Consensus 11 ~q~~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienILeGr 53 (58)
T 2ejs_A 11 SQLNAMAHQIQEMFPQVPYHLVLQDLQLTR-SVEITTDNILEGR 53 (58)
T ss_dssp CHHHHHHHHHHHHCCSSCHHHHHHHHHHHC-SHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHHhcC
Confidence 46778999999999 999999999999998 9999999999954
No 35
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.72 E-value=0.13 Score=43.59 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=38.6
Q ss_pred cchHHHHHhhhhcc-CCChHHHHHHHhhcCCCHHHHHHhhhcCC
Q 003043 22 AGSRKIVQSLKEIV-NCPESEIYAMLKECNMDPNEAVNRLLSQD 64 (854)
Q Consensus 22 ~~~rk~V~~ikEi~-~~seedi~~aL~ecn~D~n~av~rLl~q~ 64 (854)
.....+|.+|+||| ..+.+.|..-|+.++ .++.+++|||++.
T Consensus 11 ~ql~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienILeGr 53 (61)
T 2ekf_A 11 VQLATLAQRVKEVLPHVPLGVIQRDLAKTG-CVDLTITNLLEGA 53 (61)
T ss_dssp CCHHHHHHHHHHHCSSSCHHHHHHHHHTSC-CHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHHcCC
Confidence 46788999999999 999999999998887 9999999999954
No 36
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=92.68 E-value=0.12 Score=45.50 Aligned_cols=41 Identities=24% Similarity=0.322 Sum_probs=37.0
Q ss_pred cchHHHHHhhhhccCCChHHHH-HHHhhcCCCHHHHHHhhhc
Q 003043 22 AGSRKIVQSLKEIVNCPESEIY-AMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 22 ~~~rk~V~~ikEi~~~seedi~-~aL~ecn~D~n~av~rLl~ 62 (854)
...+..+.+||||+|..|..|+ .||+..++|..+||-.|.+
T Consensus 22 ~~~q~lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~ 63 (80)
T 1vdl_A 22 KHQQTFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTA 63 (80)
T ss_dssp SCHHHHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhc
Confidence 4567799999999999998876 6999999999999999988
No 37
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=92.64 E-value=0.077 Score=53.17 Aligned_cols=40 Identities=20% Similarity=0.221 Sum_probs=37.6
Q ss_pred cchHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHhhhc
Q 003043 22 AGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 22 ~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~av~rLl~ 62 (854)
.+++++|+.|.|| |..++++..||..|+.|++.|+++|++
T Consensus 161 ~~~eekV~~l~~M-Gf~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 161 PEYTKKIENLCAM-GFDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp HHHHHHHHHHHTT-TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 4679999999999 999999999999999999999999986
No 38
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=91.70 E-value=0.023 Score=54.04 Aligned_cols=46 Identities=22% Similarity=0.272 Sum_probs=40.3
Q ss_pred cccCCcchHHHHHhhhhccCCChHH-HHHHHhhcCCCHHHHHHhhhc
Q 003043 17 ISSIPAGSRKIVQSLKEIVNCPESE-IYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 17 ~~~ip~~~rk~V~~ikEi~~~seed-i~~aL~ecn~D~n~av~rLl~ 62 (854)
+-..|...+..+.+||||+|..|.+ +..||+.|+||+.+||..|.+
T Consensus 11 ~~~~~~~~Q~lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~ 57 (129)
T 2lva_A 11 RENLYFQGQMLLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTD 57 (129)
Confidence 4557778889999999999999655 568999999999999999988
No 39
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=92.49 E-value=0.1 Score=48.71 Aligned_cols=39 Identities=15% Similarity=0.277 Sum_probs=36.0
Q ss_pred chHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHhhhc
Q 003043 23 GSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 23 ~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~av~rLl~ 62 (854)
..+++|++|.+| |++++.+..||+.|++|++.|++.|+.
T Consensus 77 ~~e~~v~~L~~M-GF~~~~a~~AL~~~~~~~e~A~e~L~~ 115 (126)
T 2lbc_A 77 PPEEIVAIITSM-GFQRNQAIQALRATNNNLERALDWIFS 115 (126)
T ss_dssp CCHHHHHHHHHH-TSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred cCHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 357889999887 999999999999999999999999987
No 40
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=92.27 E-value=0.13 Score=42.84 Aligned_cols=41 Identities=15% Similarity=0.037 Sum_probs=37.7
Q ss_pred CcchHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHhhhc
Q 003043 21 PAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 21 p~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~av~rLl~ 62 (854)
|+-.++.|..|.++ |.+.+|+..||.-|+.|++.|.+.|||
T Consensus 4 ~~p~e~~Ia~L~sm-Gfsr~da~~AL~ia~Ndv~~AtNiLlE 44 (56)
T 2juj_A 4 SPQLSSEIENLMSQ-GYSYQDIQKALVIAQNNIEMAKNILRE 44 (56)
T ss_dssp CHHHHHHHHHHHTT-TCCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred CCCChHHHHHHHHc-CCCHHHHHHHHHHhcccHHHHHHHHHH
Confidence 45677889999888 999999999999999999999999998
No 41
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=92.08 E-value=0.091 Score=44.14 Aligned_cols=44 Identities=9% Similarity=0.151 Sum_probs=40.0
Q ss_pred cCCcchHHHHHhhhhcc-CCChHHHHHHHhhcCCCHHHHHHhhhcC
Q 003043 19 SIPAGSRKIVQSLKEIV-NCPESEIYAMLKECNMDPNEAVNRLLSQ 63 (854)
Q Consensus 19 ~ip~~~rk~V~~ikEi~-~~seedi~~aL~ecn~D~n~av~rLl~q 63 (854)
.++.....+|.+|++|| ..+.+.|..-|+.+ +.++.||+|||++
T Consensus 12 ~~~sql~~Mve~V~~mFPqv~~~~I~~DL~rT-gSVe~TienILeG 56 (58)
T 4g3o_A 12 YFQGQLNAMAHQIQEMFPQVPYHLVLQDLQLT-RSVEITTDNILEG 56 (58)
T ss_dssp HHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHH-CCHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHh-CCHHHHHHHHHcc
Confidence 35667789999999999 99999999999988 8999999999984
No 42
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=91.95 E-value=0.069 Score=44.28 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=32.7
Q ss_pred chHHHHHhhhhcc-CCChHHHHHHHhhcCCCHHHHHHhhhc
Q 003043 23 GSRKIVQSLKEIV-NCPESEIYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 23 ~~rk~V~~ikEi~-~~seedi~~aL~ecn~D~n~av~rLl~ 62 (854)
.+++.|+.||+|| +...|=|-.+|..++++.+.||+.||.
T Consensus 11 e~~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 11 ERKDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC----
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 5789999999999 999999999999999999999999986
No 43
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=91.85 E-value=0.062 Score=45.45 Aligned_cols=37 Identities=16% Similarity=0.226 Sum_probs=33.5
Q ss_pred HHHHHhhhhccCCChHHHHHHHhhcCC-CHHHHHHhhhc
Q 003043 25 RKIVQSLKEIVNCPESEIYAMLKECNM-DPNEAVNRLLS 62 (854)
Q Consensus 25 rk~V~~ikEi~~~seedi~~aL~ecn~-D~n~av~rLl~ 62 (854)
++.|++|.+| |++++.+..||+.|++ |++.|++.|++
T Consensus 10 e~~v~~L~~M-GF~~~~a~~AL~~t~n~~~e~A~~wL~~ 47 (64)
T 2crn_A 10 PSLLEPLLAM-GFPVHTALKALAATGRKTAEEALAWLHD 47 (64)
T ss_dssp CSSHHHHHHT-SCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 4478888887 9999999999999976 99999999997
No 44
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.60 E-value=0.28 Score=41.05 Aligned_cols=47 Identities=28% Similarity=0.364 Sum_probs=42.9
Q ss_pred CcccCCcchHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHhhhc
Q 003043 16 GISSIPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 16 ~~~~ip~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~av~rLl~ 62 (854)
+....+...+++|++..+|++++++...+.|+.|+.|++.||....+
T Consensus 7 ~~~~~s~~~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~ 53 (62)
T 2dal_A 7 GGSAASSALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLD 53 (62)
T ss_dssp CCCSSCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred chhhcCccHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 46678888999999999999999999999999999999999987765
No 45
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=91.52 E-value=0.14 Score=52.04 Aligned_cols=39 Identities=18% Similarity=0.304 Sum_probs=35.3
Q ss_pred hHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHhhhc
Q 003043 24 SRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 24 ~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~av~rLl~ 62 (854)
.-+.|+.|||.||..--||..||.||++|.+.|++.|-+
T Consensus 3 ~a~~VKeLRe~TGagmmdCKkAL~e~~GD~ekAie~LR~ 41 (196)
T 1aip_C 3 QMELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRE 41 (196)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 346899999999999999999999999999999997654
No 46
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=91.39 E-value=0.13 Score=56.52 Aligned_cols=42 Identities=17% Similarity=0.303 Sum_probs=38.9
Q ss_pred CcchHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHhhhcC
Q 003043 21 PAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQ 63 (854)
Q Consensus 21 p~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~av~rLl~q 63 (854)
....+++|++|.+| ||++++|.+||+-|++|++.||+.|+++
T Consensus 165 g~~~~~~i~~l~~M-Gf~~~~~~~AL~a~~nn~~~A~e~L~~g 206 (368)
T 1oqy_A 165 GSEYETMLTEIMSM-GYERERVVAALRASYNNPHRAVEYLLTG 206 (368)
T ss_dssp TTTHHHHHHHHHTT-TCCSHHHHHHHHHSCSSTTHHHHTTTTS
T ss_pred CcchHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 45689999999998 9999999999999999999999999984
No 47
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=91.16 E-value=0.17 Score=55.42 Aligned_cols=45 Identities=27% Similarity=0.397 Sum_probs=40.8
Q ss_pred cccCCcchHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHhhhc
Q 003043 17 ISSIPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 17 ~~~ip~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~av~rLl~ 62 (854)
...+-..-++.|..|.+| |++++.++.||..|+.|++.|++.|++
T Consensus 318 ~i~~t~ee~eaI~rL~~m-GF~~~~a~~al~a~~~n~e~A~~~L~~ 362 (368)
T 1oqy_A 318 YIQVTPQEKEAIERLKAL-GFPESLVIQAYFACEKNENLAANFLLS 362 (368)
T ss_dssp SCCCCTTTHHHHHHHHHH-TCCSHHHHHHTSSSSSCSSHHHHHHHH
T ss_pred cccCCCcCHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHhh
Confidence 345667889999999888 999999999999999999999999997
No 48
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=91.13 E-value=0.14 Score=54.75 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=35.5
Q ss_pred hHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHhhhc
Q 003043 24 SRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 24 ~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~av~rLl~ 62 (854)
.-+.|+.|||.||..--||.+||.||++|.+.|++.|-+
T Consensus 4 ta~~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~LR~ 42 (291)
T 1xb2_B 4 SKELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHK 42 (291)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 357899999999999999999999999999999997654
No 49
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=90.87 E-value=0.15 Score=53.31 Aligned_cols=41 Identities=20% Similarity=0.192 Sum_probs=38.2
Q ss_pred CcchHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHhhhc
Q 003043 21 PAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 21 p~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~av~rLl~ 62 (854)
..+++++|+.|+|+ |..++++..||..||.|++.|+++|++
T Consensus 212 ~~~~~~~v~~l~~m-gf~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 212 SPEYTKKIENLCAA-GFDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp CHHHHHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 34789999999999 999999999999999999999999986
No 50
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=90.68 E-value=0.23 Score=46.64 Aligned_cols=38 Identities=21% Similarity=0.307 Sum_probs=34.6
Q ss_pred hHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHhhhc
Q 003043 24 SRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 24 ~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~av~rLl~ 62 (854)
+.+.|.+|+|| |.+++.|.+||+.|++|++.|++-|+.
T Consensus 76 ~~~~v~~L~eM-GF~~~~a~~AL~~~~nd~erAlewL~~ 113 (118)
T 4ae4_A 76 FLQLMSKFKEM-GFELKDIKEVLLLHNNDQDNALEDLMA 113 (118)
T ss_dssp HHHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 55678899888 999999999999999999999998875
No 51
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=89.63 E-value=0.27 Score=39.25 Aligned_cols=40 Identities=18% Similarity=0.289 Sum_probs=35.6
Q ss_pred chHHHHHhhhhccCCCh-HHHHHHHhhcCCCHHHHHHhhhc
Q 003043 23 GSRKIVQSLKEIVNCPE-SEIYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 23 ~~rk~V~~ikEi~~~se-edi~~aL~ecn~D~n~av~rLl~ 62 (854)
+..++|.+..+|+|.++ ++..+.|..||.|.+.||...+-
T Consensus 4 d~de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f~~ 44 (45)
T 3e21_A 4 DREMILADFQACTGIENIDEAITLLEQNNWDLVAAINGVIP 44 (45)
T ss_dssp CHHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC--
T ss_pred cHHHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHHcC
Confidence 67899999999999998 99999999999999999986543
No 52
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=89.17 E-value=0.4 Score=42.52 Aligned_cols=40 Identities=23% Similarity=0.236 Sum_probs=36.0
Q ss_pred cchHHHHHhhhhccCCChHHHHHHHhhcC-CCHHHHHHhhhc
Q 003043 22 AGSRKIVQSLKEIVNCPESEIYAMLKECN-MDPNEAVNRLLS 62 (854)
Q Consensus 22 ~~~rk~V~~ikEi~~~seedi~~aL~ecn-~D~n~av~rLl~ 62 (854)
.-.+++|++|.+| |++++.+..||+.|+ +|++.|++.|++
T Consensus 27 ~~~e~~v~~L~~M-GF~~~~a~~AL~~t~n~n~e~A~ewL~~ 67 (84)
T 1vek_A 27 VANEEIVAQLVSM-GFSQLHCQKAAINTSNAGVEEAMNWLLS 67 (84)
T ss_dssp CCCHHHHHHHHHH-TCCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHc-CCCHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3468899999998 999999999999885 899999999997
No 53
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=88.95 E-value=0.41 Score=37.00 Aligned_cols=40 Identities=10% Similarity=0.171 Sum_probs=36.3
Q ss_pred chHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHhhhc
Q 003043 23 GSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 23 ~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~av~rLl~ 62 (854)
+.+++|++..+|++++++.....|+.|+.|++.||....+
T Consensus 4 ~~~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~ 43 (46)
T 1v92_A 4 ERQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYE 43 (46)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 4678999999999999999999999999999999987654
No 54
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=88.86 E-value=0.32 Score=44.73 Aligned_cols=36 Identities=19% Similarity=0.215 Sum_probs=33.0
Q ss_pred HHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHhh
Q 003043 25 RKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRL 60 (854)
Q Consensus 25 rk~V~~ikEi~~~seedi~~aL~ecn~D~n~av~rL 60 (854)
.|.|..|++-+++|.++-..||++|++|+-+||-.|
T Consensus 66 ~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 66 EDDIELVMNQTGASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 577899999999999999999999999999998765
No 55
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=88.16 E-value=0.36 Score=41.13 Aligned_cols=44 Identities=9% Similarity=0.216 Sum_probs=38.3
Q ss_pred ccCCcchHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHhhhc
Q 003043 18 SSIPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 18 ~~ip~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~av~rLl~ 62 (854)
..+.+.-++.|.+|-.| |.+++-..+||+.|++|++.|++-|.+
T Consensus 13 ~~ls~se~e~V~~LvsM-GFs~~qA~kALKat~~NvErAaDWLFS 56 (63)
T 1wgn_A 13 QMLSPSERQCVETVVNM-GYSYECVLRAMKKKGENIEQILDYLFA 56 (63)
T ss_dssp HTCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HhhCcchHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 34566778888888776 999999999999999999999998875
No 56
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.03 E-value=0.88 Score=38.68 Aligned_cols=45 Identities=11% Similarity=0.166 Sum_probs=40.9
Q ss_pred ccCCcchHHHHHhhhhccC-CChHHHHHHHhhcCCCHHHHHHhhhc
Q 003043 18 SSIPAGSRKIVQSLKEIVN-CPESEIYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 18 ~~ip~~~rk~V~~ikEi~~-~seedi~~aL~ecn~D~n~av~rLl~ 62 (854)
..+..+.+++|++..+|++ .+++...+.|+.|+.|++.||....+
T Consensus 12 ~~Ls~~~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~ 57 (67)
T 2dam_A 12 RDLTQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLN 57 (67)
T ss_dssp CCCCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hhcChhHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4678889999999999999 88889999999999999999997765
No 57
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=86.88 E-value=0.65 Score=37.39 Aligned_cols=38 Identities=16% Similarity=0.043 Sum_probs=33.4
Q ss_pred hHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHhhhc
Q 003043 24 SRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 24 ~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~av~rLl~ 62 (854)
.+..|..|.++ |.+.+|+..||.-|++|++.|.+.|++
T Consensus 4 ~e~~I~~L~s~-Gf~~~~~~rAL~ia~Nnie~A~nIL~e 41 (46)
T 2oo9_A 4 LSSEIENLMSQ-GYSYQDIQKALVIAQNNIEMAKNILRE 41 (46)
T ss_dssp HHHHHHHHHHT-TBCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHc-CCCHHHHHHHHHHhhccHHHHHHHHHH
Confidence 45667777666 999999999999999999999999986
No 58
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=84.03 E-value=0.95 Score=42.45 Aligned_cols=43 Identities=9% Similarity=0.252 Sum_probs=39.6
Q ss_pred cCCcchHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHhhhc
Q 003043 19 SIPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 19 ~ip~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~av~rLl~ 62 (854)
.+.+.-|+.|++|-+| |.+++.+..||+.|++|++.|++.|+.
T Consensus 3 ~l~~~e~~~v~~l~~M-GFp~~~~~kAl~~~g~~~e~amewL~~ 45 (118)
T 4ae4_A 3 HMSPSERQCVETVVNM-GYSYECVLRAMKAAGANIEQILDYLFA 45 (118)
T ss_dssp CSCHHHHHHHHHHHHT-TCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc-CCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 3677789999999888 999999999999999999999999986
No 59
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=79.65 E-value=1.1 Score=41.70 Aligned_cols=37 Identities=19% Similarity=0.185 Sum_probs=32.9
Q ss_pred HHHHHhhhhccCCChHHHHHHHhhcC-CCHHHHHHhhhc
Q 003043 25 RKIVQSLKEIVNCPESEIYAMLKECN-MDPNEAVNRLLS 62 (854)
Q Consensus 25 rk~V~~ikEi~~~seedi~~aL~ecn-~D~n~av~rLl~ 62 (854)
.++|++|.+| |.+++.+..||+.|+ +|+++|++.|++
T Consensus 4 ~~~l~~L~~M-GF~~~~a~~AL~~t~n~~~e~A~~wL~~ 41 (126)
T 2lbc_A 4 ESSVMQLAEM-GFPLEACRKAVYFTGNMGAEVAFNWIIV 41 (126)
T ss_dssp THHHHHHHTT-SSCCHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3578888886 999999999999995 599999999997
No 60
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=78.68 E-value=0.34 Score=60.51 Aligned_cols=36 Identities=22% Similarity=0.244 Sum_probs=33.2
Q ss_pred HHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHhhh
Q 003043 26 KIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLL 61 (854)
Q Consensus 26 k~V~~ikEi~~~seedi~~aL~ecn~D~n~av~rLl 61 (854)
+.|+.|||.+|..--||.+||.|||+|.+.|++-|-
T Consensus 7 ~~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~LR 42 (1289)
T 3avx_A 7 SLVKELRERTGAGMMDCKKALTEANGDIELAIENMR 42 (1289)
T ss_dssp SCTHHHHTTTCCCTTTTTTTTTTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 468999999999999999999999999999999664
No 61
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=78.23 E-value=3.3 Score=34.34 Aligned_cols=39 Identities=21% Similarity=0.241 Sum_probs=33.5
Q ss_pred chHHHHHhhhhccCC-ChHHHHHHHhhcCCCHHHHHHhhhc
Q 003043 23 GSRKIVQSLKEIVNC-PESEIYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 23 ~~rk~V~~ikEi~~~-seedi~~aL~ecn~D~n~av~rLl~ 62 (854)
-+..++++|.|| |. .++.-+.+|+.|++|++.||++||.
T Consensus 8 ~~a~~L~~L~eM-GF~D~~~N~~aL~~~~gnv~~aI~~Ll~ 47 (54)
T 2cp8_A 8 QTAALMAHLFEM-GFCDRQLNLRLLKKHNYNILQVVTELLQ 47 (54)
T ss_dssp THHHHHHHHHHH-TCCCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 355678899998 65 6778899999999999999999995
No 62
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=72.67 E-value=2.2 Score=38.14 Aligned_cols=38 Identities=16% Similarity=0.379 Sum_probs=34.1
Q ss_pred HHHHhhhhcc--CCChHHHHHHHhhcCCCHHHHHHhhhcC
Q 003043 26 KIVQSLKEIV--NCPESEIYAMLKECNMDPNEAVNRLLSQ 63 (854)
Q Consensus 26 k~V~~ikEi~--~~seedi~~aL~ecn~D~n~av~rLl~q 63 (854)
.-+.+||+|+ ..+|..++-|--.|++|++.|++.||++
T Consensus 36 SCLd~iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 36 SCLDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHHHHHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 3467899999 4899999999999999999999999974
No 63
>2l3n_A DNA-binding protein RAP1, telomere length regulat; TAZ1; NMR {Schizosaccharomyces pombe}
Probab=67.17 E-value=13 Score=33.24 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=34.2
Q ss_pred CcchHHHH---HhhhhccCCChHHHHHHHhhcCCCHHHHHHhhhc
Q 003043 21 PAGSRKIV---QSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 21 p~~~rk~V---~~ikEi~~~seedi~~aL~ecn~D~n~av~rLl~ 62 (854)
...+|++- ..|-..++.+|...+.|++.+++-+..||-+||+
T Consensus 8 svnhrevdeaidnilrytnsteqqfleamestggrvriaiaklls 52 (104)
T 2l3n_A 8 SVNHREVDEAIDNILRYTNSTEQQFLEAMESTGGRVRIAIAKLLS 52 (104)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred hcchhHHHHHHHHHHHhccchHHHHHHHHHhcCCeeehHHHHHHh
Confidence 34566654 4444455999999999999999999999999998
No 64
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=61.13 E-value=1.7 Score=44.33 Aligned_cols=39 Identities=23% Similarity=0.329 Sum_probs=0.0
Q ss_pred chHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHhhhc
Q 003043 23 GSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 23 ~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~av~rLl~ 62 (854)
..+++|+.+.|+ |..++++..||..|+.|++.|+++||+
T Consensus 176 ~~~~~v~~~~~m-gf~~~~~~~al~~~~~~~~~~~~~l~~ 214 (216)
T 2pwq_A 176 PREVIIKKITEM-GFSEDQAKNALIKANWNETLALNTLLE 214 (216)
T ss_dssp ----------------------------------------
T ss_pred chhhHHHHHHHc-CCCHHHHHHHHHHcCCchHHHHHHHhc
Confidence 346788888777 999999999999999999999999997
No 65
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.67 E-value=9.1 Score=32.44 Aligned_cols=37 Identities=8% Similarity=0.262 Sum_probs=34.4
Q ss_pred HHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHhhhc
Q 003043 26 KIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 26 k~V~~ikEi~~~seedi~~aL~ecn~D~n~av~rLl~ 62 (854)
++|++..+|++++++.-.+.|+.++.|.+.||....+
T Consensus 19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~ 55 (66)
T 2dzl_A 19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQ 55 (66)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 6899999999999999999999999999999997765
No 66
>2gpi_A Conserved hypothetical protein; transcriptional regulation of the shikimate pathway, structu genomics, joint center for structural genomics; HET: MSE; 1.60A {Shewanella loihica} SCOP: d.354.1.1
Probab=52.63 E-value=5.4 Score=36.07 Aligned_cols=39 Identities=15% Similarity=0.377 Sum_probs=32.9
Q ss_pred hhhhccC---CChHHHHHHHhhcCCCHHHHHHhhhcCCCcce
Q 003043 30 SLKEIVN---CPESEIYAMLKECNMDPNEAVNRLLSQDPFHE 68 (854)
Q Consensus 30 ~ikEi~~---~seedi~~aL~ecn~D~n~av~rLl~q~~~~E 68 (854)
.|.+.+| ..++|++++++++..|.++.+++||+...|.+
T Consensus 40 ~Le~~~g~~~~~~~~~l~~F~~~R~diEe~Ae~lIe~e~~d~ 81 (91)
T 2gpi_A 40 VLEHLAAEKINNSEQALSLFEQFRFDIEEQAEKLIEQEAFDV 81 (91)
T ss_dssp HHHHHHTSCCCSHHHHHHHHHHTHHHHHHHHHHHHHTTCCCT
T ss_pred HHHHHhCccCCCHHHHHHHHHHcchhHHHHHHHHHHcccccc
Confidence 4555666 78999999999999999999999999866544
No 67
>2jz1_A Protein doublesex; sex determination, development, gene regulation, ubiquitin, transcription; NMR {Drosophila melanogaster}
Probab=42.56 E-value=12 Score=33.14 Aligned_cols=39 Identities=26% Similarity=0.320 Sum_probs=30.2
Q ss_pred hHHHHHhhhhccCCCh---HHHHHHHhhcCCCHHHHHHhhhc
Q 003043 24 SRKIVQSLKEIVNCPE---SEIYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 24 ~rk~V~~ikEi~~~se---edi~~aL~ecn~D~n~av~rLl~ 62 (854)
+-|--+.|-|-|+.+= .=+|.+|++.+.|++||..||-+
T Consensus 9 ll~~c~kLLEkF~YpWEMMpLMyVILK~a~~d~eeAsrrI~e 50 (80)
T 2jz1_A 9 FLDYCQKLLEKFRYPWELMPLMYVILKDADANIEEASRRIEE 50 (80)
T ss_dssp HHHHHHHHHHHTTCCGGGHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 3455567778886553 35789999999999999999866
No 68
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=40.23 E-value=17 Score=36.97 Aligned_cols=38 Identities=13% Similarity=0.394 Sum_probs=31.5
Q ss_pred hHHHHHhhhhccCCChHHHHHHHhhcCCCH-----HHHHHhhhc
Q 003043 24 SRKIVQSLKEIVNCPESEIYAMLKECNMDP-----NEAVNRLLS 62 (854)
Q Consensus 24 ~rk~V~~ikEi~~~seedi~~aL~ecn~D~-----n~av~rLl~ 62 (854)
-+++|+.+.|| |..++.++.||..|+.|. .+..+++|+
T Consensus 169 ~~~~v~~~~~m-g~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 211 (215)
T 1tte_A 169 DHDLIDEFESQ-GFEKDKIVEVLRRLGVKSLDPNDNNTANRIIE 211 (215)
T ss_dssp SHHHHHHHHHH-TCCHHHHHHHHHHSCCSSCCSSCCHHHHHHHH
T ss_pred cHHHHHHHHHc-CCCHHHHHHHHHHcCCCcccchhhhhHHHHHH
Confidence 37899999888 899999999999999998 555566654
No 69
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=32.98 E-value=34 Score=28.48 Aligned_cols=40 Identities=18% Similarity=0.245 Sum_probs=35.1
Q ss_pred cchHHHHHhhhhccCCChHHHHHHHhhcCC-CHHHHHHhhhc
Q 003043 22 AGSRKIVQSLKEIVNCPESEIYAMLKECNM-DPNEAVNRLLS 62 (854)
Q Consensus 22 ~~~rk~V~~ikEi~~~seedi~~aL~ecn~-D~n~av~rLl~ 62 (854)
...|+++++|-|+ |+.++-...||+.++. .++.|++.|+.
T Consensus 7 ~vn~qmlq~L~eM-GFd~erae~Alk~Tg~~Gle~AmewL~k 47 (54)
T 2cos_A 7 GVNRQMLQELVNA-GCDQEMAGRALKQTGSRSIEAALEYISK 47 (54)
T ss_dssp SCCHHHHHHHHHH-HCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHc-CCCHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 6789999999888 9999999999999998 68888887764
No 70
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=32.25 E-value=15 Score=38.56 Aligned_cols=46 Identities=20% Similarity=0.235 Sum_probs=11.7
Q ss_pred HHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHhhhcCCCcceee
Q 003043 25 RKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQDPFHEVK 70 (854)
Q Consensus 25 rk~V~~ikEi~~~seedi~~aL~ecn~D~n~av~rLl~q~~~~EVk 70 (854)
++-...|+++++++++++-.+|++|++++-.||--++.+-...|-+
T Consensus 245 ~r~~~~i~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~a~ 290 (306)
T 1nri_A 245 ARAVRIVMQATDCNKTLAEQTLLEADQNAKLAIMMILSTLSKSEAK 290 (306)
T ss_dssp HHHHHHHHHHSCCCC-------------------------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCChHHHHHHHHhCCCHHHHH
Confidence 3446778888899999999999999999999998776643444443
No 71
>1zv1_A Doublesex protein; UBA domain, dimerization, sex determination, transcription factor, protein binding; 1.60A {Drosophila melanogaster} PDB: 2jz0_A
Probab=31.87 E-value=24 Score=30.24 Aligned_cols=39 Identities=26% Similarity=0.320 Sum_probs=29.9
Q ss_pred hHHHHHhhhhccCCCh---HHHHHHHhhcCCCHHHHHHhhhc
Q 003043 24 SRKIVQSLKEIVNCPE---SEIYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 24 ~rk~V~~ikEi~~~se---edi~~aL~ecn~D~n~av~rLl~ 62 (854)
+-|--+.|-|-|+.+= .=.|.+|++.+.|++||..||-+
T Consensus 9 Ll~~c~kLLEkf~YpWEmMpLMYVILK~A~~d~eeAsrrI~E 50 (65)
T 1zv1_A 9 FLDYCQKLLEKFRYPWELMPLMYVILKDADANIEEASRRIEE 50 (65)
T ss_dssp HHHHHHHHHHHTTCCGGGHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHhHHHHHHHhccCCCHHHHHHHHHH
Confidence 3445566778885553 34688999999999999999977
No 72
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=30.12 E-value=46 Score=28.86 Aligned_cols=15 Identities=7% Similarity=0.158 Sum_probs=12.6
Q ss_pred CCChHHHHHHHhhcC
Q 003043 36 NCPESEIYAMLKECN 50 (854)
Q Consensus 36 ~~seedi~~aL~ecn 50 (854)
+++++||..+|..|+
T Consensus 26 ~~t~~~l~~~F~~~G 40 (108)
T 1x4c_A 26 SGSWQDLKDHMREAG 40 (108)
T ss_dssp SCCHHHHHHHHGGGS
T ss_pred CCCHHHHHHHHHhcC
Confidence 788888888888886
No 73
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=29.99 E-value=18 Score=32.07 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=35.4
Q ss_pred ccCCcchHHHH-Hhhhhcc-CCChHHHHHHHhhcCCCHH---HHHHhhhcCCCcceeec
Q 003043 18 SSIPAGSRKIV-QSLKEIV-NCPESEIYAMLKECNMDPN---EAVNRLLSQDPFHEVKS 71 (854)
Q Consensus 18 ~~ip~~~rk~V-~~ikEi~-~~seedi~~aL~ecn~D~n---~av~rLl~q~~~~EVkk 71 (854)
...+.+.+.+| ..||... |.+++||..+| -+++++ +||++||.++-..-.|+
T Consensus 9 ~~~~~~ie~~IL~l~~~~P~GItd~~L~~~~--p~~~~~~r~~aIN~LL~~gkiel~K~ 65 (81)
T 2dk8_A 9 DADPVEIENRIIELCHQFPHGITDQVIQNEM--PHIEAQQRAVAINRLLSMGQLDLLRS 65 (81)
T ss_dssp SSCHHHHHHHHHHHHHHCSSCEEHHHHHHHC--TTSCHHHHHHHHHHHHHHTSEEEEEC
T ss_pred cccHHHHHHHHHHHHHhCCCCCCHHHHHHHC--CCCCHHHHHHHHHHHHHcCCeEEEec
Confidence 33445555554 4444445 99999999999 455554 57799999888775554
No 74
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=27.26 E-value=50 Score=33.85 Aligned_cols=45 Identities=13% Similarity=0.273 Sum_probs=38.2
Q ss_pred ccCCcchHHHHHhhhhcc-------CCChHHHHHHHhhcCCCHHHHHHhhhc
Q 003043 18 SSIPAGSRKIVQSLKEIV-------NCPESEIYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 18 ~~ip~~~rk~V~~ikEi~-------~~seedi~~aL~ecn~D~n~av~rLl~ 62 (854)
..++..-++.|+.||+.+ .++|.-++.-|+-|++|+++|..+|..
T Consensus 24 ~~l~~~q~~~l~~lr~~l~~~~~~~~~dd~~LlRFLrarkfdv~~A~~~l~~ 75 (296)
T 1aua_A 24 GNLDSAQEKALAELRKLLEDAGFIERLDDSTLLRFLRARKFDVQLAKEMFEN 75 (296)
T ss_dssp TTCCTTHHHHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHcCCCHHHHHHHHHH
Confidence 457778888999998865 257889999999999999999998865
No 75
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=26.22 E-value=65 Score=26.74 Aligned_cols=39 Identities=10% Similarity=0.101 Sum_probs=34.6
Q ss_pred cchHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHhh
Q 003043 22 AGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRL 60 (854)
Q Consensus 22 ~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~av~rL 60 (854)
..-+++|..+.+.++..-+=....|+||+-|.+.|+...
T Consensus 5 ~~q~~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F 43 (59)
T 1oai_A 5 PEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAF 43 (59)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 356788999999999999999999999999999999743
No 76
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=25.61 E-value=61 Score=34.84 Aligned_cols=45 Identities=13% Similarity=0.193 Sum_probs=36.5
Q ss_pred ccCCcchHHHHHhhhhcc--------CCChHHHHHHHhhcCCCHHHHHHhhhc
Q 003043 18 SSIPAGSRKIVQSLKEIV--------NCPESEIYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 18 ~~ip~~~rk~V~~ikEi~--------~~seedi~~aL~ecn~D~n~av~rLl~ 62 (854)
..++..-++.|+.||+.+ .++|.-++.-|+-|++|+++|..+|..
T Consensus 6 ~~l~~~q~~~l~~lr~~l~~~~~~l~~~dD~~LlRFLrarkfdv~~A~~~l~~ 58 (403)
T 1olm_A 6 GDLSPRQKEALAKFRENVQDVLPALPNPDDYFLLRWLRARSFDLQKSEAMLRK 58 (403)
T ss_dssp TBCCHHHHHHHHHHHHHHGGGGGGSSCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhhccCCCCCChhHHHHHHHhcCCCHHHHHHHHHH
Confidence 356777777788887754 357888999999999999999998876
No 77
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=20.92 E-value=80 Score=33.35 Aligned_cols=45 Identities=13% Similarity=0.315 Sum_probs=37.8
Q ss_pred ccCCcchHHHHHhhhhcc-------CCChHHHHHHHhhcCCCHHHHHHhhhc
Q 003043 18 SSIPAGSRKIVQSLKEIV-------NCPESEIYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 18 ~~ip~~~rk~V~~ikEi~-------~~seedi~~aL~ecn~D~n~av~rLl~ 62 (854)
..+..+-++.|++|||.+ .++|+-++.-|+-|++|+++|+.+|..
T Consensus 33 ~~lt~~q~~~l~~lR~~l~~~~~~~~~dD~~LLRFLRArkfdv~kA~~mL~~ 84 (320)
T 3q8g_A 33 GNLTKEQEEALLQFRSILLEKNYKERLDDSTLLRFLRARKFDINASVEMFVE 84 (320)
T ss_dssp TCCCHHHHHHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 457777888888888865 367889999999999999999998865
No 78
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=20.17 E-value=34 Score=39.52 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=26.5
Q ss_pred hhhccCCChHHHHHHHhhcCCCHHHHHHhhhc
Q 003043 31 LKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (854)
Q Consensus 31 ikEi~~~seedi~~aL~ecn~D~n~av~rLl~ 62 (854)
+|+..+|.+.|+..+|-|-.+|++++++.|-.
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (611)
T 3izq_1 45 LQDYQGWDNLSLKLALFDNNFDLESTLAELKK 76 (611)
T ss_dssp HHHHHCCCSSHHHHHHHHTTTCSSHHHHHHHH
T ss_pred HHHhcCcchhHHHHHHHHhhccHHHHHHHHHH
Confidence 34434899999999999999999999886654
Done!