Query 003044
Match_columns 854
No_of_seqs 345 out of 1886
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 15:55:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003044.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003044hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 1E-215 3E-220 1872.6 77.8 834 4-841 6-840 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 2E-151 5E-156 1282.4 42.3 629 25-737 17-648 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 6.1E-88 1.3E-92 739.8 20.5 297 34-339 1-318 (319)
4 COG1874 LacA Beta-galactosidas 100.0 3.3E-36 7.2E-41 351.9 13.7 289 28-325 1-332 (673)
5 PF02449 Glyco_hydro_42: Beta- 99.8 2E-19 4.3E-24 202.7 16.3 263 49-342 2-373 (374)
6 KOG4729 Galactoside-binding le 99.8 6.8E-20 1.5E-24 189.7 8.1 87 757-844 42-133 (265)
7 PF02140 Gal_Lectin: Galactose 99.8 4.9E-20 1.1E-24 163.1 5.0 76 763-840 1-80 (80)
8 PF02836 Glyco_hydro_2_C: Glyc 99.2 2.8E-10 6.1E-15 124.6 19.6 192 28-260 1-212 (298)
9 PRK10150 beta-D-glucuronidase; 99.1 2.1E-08 4.6E-13 120.3 26.0 159 26-219 276-448 (604)
10 PRK10340 ebgA cryptic beta-D-g 98.8 7E-08 1.5E-12 121.7 19.3 259 26-340 318-602 (1021)
11 PF13364 BetaGal_dom4_5: Beta- 98.8 8.6E-09 1.9E-13 97.1 7.6 69 618-711 33-104 (111)
12 PRK09525 lacZ beta-D-galactosi 98.8 1.3E-07 2.8E-12 119.2 19.3 149 26-219 334-488 (1027)
13 PF00150 Cellulase: Cellulase 98.7 1.2E-07 2.6E-12 101.7 14.6 159 38-218 4-170 (281)
14 COG3250 LacZ Beta-galactosidas 98.6 3.5E-07 7.6E-12 111.7 15.7 120 26-187 284-409 (808)
15 PF13364 BetaGal_dom4_5: Beta- 98.4 1.5E-06 3.2E-11 82.0 9.2 84 459-549 24-110 (111)
16 PF02837 Glyco_hydro_2_N: Glyc 98.0 1.9E-05 4.1E-10 78.9 9.3 99 466-570 64-164 (167)
17 PF03198 Glyco_hydro_72: Gluca 97.9 0.00016 3.4E-09 79.1 14.5 155 24-216 7-179 (314)
18 smart00633 Glyco_10 Glycosyl h 97.9 3.5E-05 7.5E-10 82.9 9.3 116 80-220 3-125 (254)
19 PLN02705 beta-amylase 97.8 6.4E-05 1.4E-09 87.2 9.5 80 55-140 266-357 (681)
20 PLN02905 beta-amylase 97.8 9.1E-05 2E-09 86.3 9.7 81 55-141 284-376 (702)
21 PLN02801 beta-amylase 97.7 0.00011 2.4E-09 84.2 9.7 80 55-140 35-126 (517)
22 PLN00197 beta-amylase; Provisi 97.7 0.00014 3.1E-09 83.9 9.7 81 55-141 125-217 (573)
23 TIGR03356 BGL beta-galactosida 97.6 6.6E-05 1.4E-09 86.7 5.9 97 57-165 54-151 (427)
24 PLN02803 beta-amylase 97.6 0.00023 5.1E-09 82.0 9.7 81 55-141 105-197 (548)
25 PLN02161 beta-amylase 97.5 0.00032 6.8E-09 80.6 9.9 81 55-141 115-207 (531)
26 PF13204 DUF4038: Protein of u 97.4 0.00098 2.1E-08 73.3 11.7 225 32-286 2-274 (289)
27 PF01373 Glyco_hydro_14: Glyco 97.3 0.00027 5.9E-09 79.7 5.9 114 58-181 17-152 (402)
28 PF00331 Glyco_hydro_10: Glyco 97.0 0.002 4.2E-08 71.9 8.0 158 44-221 11-179 (320)
29 COG3693 XynA Beta-1,4-xylanase 96.8 0.011 2.4E-07 64.9 12.0 133 66-221 55-194 (345)
30 PF00232 Glyco_hydro_1: Glycos 96.6 0.0027 5.9E-08 74.1 5.8 98 56-165 57-156 (455)
31 PF02837 Glyco_hydro_2_N: Glyc 96.5 0.0065 1.4E-07 60.6 6.8 66 619-711 67-136 (167)
32 PRK10150 beta-D-glucuronidase; 96.4 0.014 2.9E-07 70.7 10.8 100 467-572 62-179 (604)
33 PF14488 DUF4434: Domain of un 96.2 0.083 1.8E-06 53.5 13.1 134 52-216 15-157 (166)
34 PLN02849 beta-glucosidase 96.0 0.013 2.8E-07 69.2 7.2 100 57-164 79-180 (503)
35 COG2730 BglC Endoglucanase [Ca 96.0 0.02 4.4E-07 66.0 8.6 115 55-187 66-193 (407)
36 PRK09852 cryptic 6-phospho-bet 96.0 0.0072 1.6E-07 70.9 4.9 96 57-164 71-169 (474)
37 PRK15014 6-phospho-beta-glucos 96.0 0.0079 1.7E-07 70.6 5.1 95 58-164 70-167 (477)
38 PF07745 Glyco_hydro_53: Glyco 95.9 0.024 5.2E-07 63.5 8.2 103 60-186 27-136 (332)
39 PLN02998 beta-glucosidase 95.8 0.0093 2E-07 70.3 5.0 100 57-164 82-183 (497)
40 PRK10340 ebgA cryptic beta-D-g 95.8 0.031 6.7E-07 71.5 9.9 95 469-572 108-206 (1021)
41 PRK09593 arb 6-phospho-beta-gl 95.7 0.016 3.4E-07 68.2 6.0 100 57-164 73-175 (478)
42 PLN02814 beta-glucosidase 95.6 0.012 2.7E-07 69.4 4.9 97 56-164 76-174 (504)
43 PRK13511 6-phospho-beta-galact 95.6 0.016 3.4E-07 68.1 5.5 96 57-164 54-150 (469)
44 PRK09589 celA 6-phospho-beta-g 95.5 0.018 3.9E-07 67.7 5.6 100 57-164 67-169 (476)
45 TIGR01233 lacG 6-phospho-beta- 95.4 0.021 4.5E-07 67.0 5.7 96 57-164 53-149 (467)
46 PRK09525 lacZ beta-D-galactosi 95.3 0.062 1.3E-06 68.8 9.9 94 469-571 119-217 (1027)
47 COG3867 Arabinogalactan endo-1 94.6 0.16 3.4E-06 55.3 9.1 116 59-187 65-183 (403)
48 PF02055 Glyco_hydro_30: O-Gly 94.4 0.35 7.6E-06 57.2 12.3 322 40-391 74-472 (496)
49 PF14871 GHL6: Hypothetical gl 93.5 0.38 8.3E-06 47.0 8.8 98 61-163 4-123 (132)
50 COG2723 BglB Beta-glucosidase/ 92.8 0.16 3.4E-06 59.0 5.7 96 57-164 59-157 (460)
51 PRK09936 hypothetical protein; 92.6 0.44 9.5E-06 52.1 8.3 58 52-115 33-91 (296)
52 PF02638 DUF187: Glycosyl hydr 91.7 0.84 1.8E-05 50.9 9.7 116 55-183 17-162 (311)
53 smart00642 Aamy Alpha-amylase 88.5 1.2 2.6E-05 45.1 6.8 68 56-123 18-97 (166)
54 TIGR00542 hxl6Piso_put hexulos 88.3 5.4 0.00012 43.2 12.3 131 56-214 15-149 (279)
55 PF11875 DUF3395: Domain of un 87.8 0.65 1.4E-05 46.4 4.3 71 774-846 55-139 (151)
56 KOG2230 Predicted beta-mannosi 87.6 1.9 4.2E-05 50.7 8.3 150 32-221 327-494 (867)
57 TIGR01515 branching_enzym alph 87.4 6.2 0.00013 48.2 13.2 57 60-116 159-226 (613)
58 PRK13210 putative L-xylulose 5 86.2 5.8 0.00012 42.9 11.0 131 57-214 16-149 (284)
59 PRK14706 glycogen branching en 84.3 13 0.00027 45.8 13.7 53 64-116 175-237 (639)
60 COG1649 Uncharacterized protei 83.5 8.1 0.00018 44.8 10.9 123 54-186 61-210 (418)
61 PF05913 DUF871: Bacterial pro 83.3 2.3 4.9E-05 48.4 6.4 71 45-121 2-72 (357)
62 PF01229 Glyco_hydro_39: Glyco 83.3 3.1 6.7E-05 49.3 7.8 125 47-187 29-167 (486)
63 COG3934 Endo-beta-mannanase [C 82.0 1.2 2.6E-05 51.6 3.4 157 34-208 3-168 (587)
64 PRK05402 glycogen branching en 81.7 15 0.00032 45.9 13.1 54 63-116 272-335 (726)
65 smart00812 Alpha_L_fucos Alpha 81.7 1.1E+02 0.0023 35.4 25.0 250 49-352 76-342 (384)
66 PRK09441 cytoplasmic alpha-amy 81.7 2.2 4.8E-05 50.4 5.7 61 56-116 18-101 (479)
67 PRK01060 endonuclease IV; Prov 80.9 29 0.00064 37.4 13.8 93 59-180 14-109 (281)
68 PF01261 AP_endonuc_2: Xylose 80.5 3.3 7.1E-05 41.9 5.9 126 63-216 1-130 (213)
69 PF13200 DUF4015: Putative gly 80.1 6.5 0.00014 44.0 8.4 112 55-167 11-137 (316)
70 PRK13209 L-xylulose 5-phosphat 78.2 16 0.00034 39.6 10.6 125 58-214 22-154 (283)
71 PRK12568 glycogen branching en 78.0 38 0.00082 42.2 14.7 55 62-118 275-341 (730)
72 cd00019 AP2Ec AP endonuclease 77.5 19 0.00041 39.0 10.9 54 57-114 10-64 (279)
73 PF00128 Alpha-amylase: Alpha 76.9 2.7 5.9E-05 45.2 4.2 57 60-116 7-72 (316)
74 PLN02447 1,4-alpha-glucan-bran 76.1 5.5 0.00012 49.5 6.9 60 56-116 250-320 (758)
75 PRK14705 glycogen branching en 75.9 44 0.00096 44.0 15.1 55 62-116 771-835 (1224)
76 TIGR01531 glyc_debranch glycog 75.1 13 0.00028 49.0 9.9 98 51-154 124-238 (1464)
77 TIGR03234 OH-pyruv-isom hydrox 75.0 39 0.00084 36.0 12.4 43 58-114 15-57 (254)
78 PRK09997 hydroxypyruvate isome 73.3 53 0.0012 35.1 13.0 49 49-114 10-58 (258)
79 TIGR02402 trehalose_TreZ malto 71.5 6.6 0.00014 47.2 6.0 57 60-116 114-180 (542)
80 PRK09856 fructoselysine 3-epim 69.8 61 0.0013 34.8 12.5 129 58-214 14-145 (275)
81 PF14307 Glyco_tran_WbsX: Glyc 67.4 71 0.0015 36.2 12.8 137 54-218 55-195 (345)
82 TIGR02631 xylA_Arthro xylose i 67.0 55 0.0012 37.7 11.9 90 56-164 31-125 (382)
83 PRK09989 hypothetical protein; 66.4 60 0.0013 34.7 11.6 42 59-114 17-58 (258)
84 PLN02960 alpha-amylase 65.4 12 0.00026 47.1 6.5 57 60-116 420-486 (897)
85 PF06832 BiPBP_C: Penicillin-B 64.9 11 0.00025 33.7 4.7 50 493-550 34-84 (89)
86 PF02679 ComA: (2R)-phospho-3- 64.7 8.9 0.00019 41.4 4.6 52 56-117 83-134 (244)
87 PRK12313 glycogen branching en 64.5 12 0.00026 45.9 6.3 54 63-116 177-240 (633)
88 PF02065 Melibiase: Melibiase; 64.3 93 0.002 36.1 13.1 164 50-222 51-236 (394)
89 PRK09505 malS alpha-amylase; R 63.6 13 0.00028 46.0 6.3 58 59-116 232-312 (683)
90 COG0296 GlgB 1,4-alpha-glucan 63.3 13 0.00028 45.3 6.1 57 55-115 163-233 (628)
91 TIGR02403 trehalose_treC alpha 62.6 12 0.00025 45.1 5.7 59 56-116 26-95 (543)
92 COG3623 SgaU Putative L-xylulo 62.0 80 0.0017 34.0 10.8 23 56-78 17-39 (287)
93 cd06593 GH31_xylosidase_YicI Y 61.3 18 0.00039 40.0 6.5 68 54-121 21-91 (308)
94 cd04908 ACT_Bt0572_1 N-termina 61.1 26 0.00057 29.3 6.0 55 56-114 12-66 (66)
95 PF14683 CBM-like: Polysacchar 60.9 9.7 0.00021 38.8 3.9 62 644-716 92-154 (167)
96 PLN00196 alpha-amylase; Provis 60.7 37 0.0008 39.7 9.1 57 60-116 47-112 (428)
97 TIGR02104 pulA_typeI pullulana 60.5 14 0.00031 44.9 6.0 56 61-116 168-249 (605)
98 PRK10785 maltodextrin glucosid 60.2 17 0.00037 44.3 6.5 57 60-116 182-246 (598)
99 TIGR02456 treS_nterm trehalose 59.7 18 0.00038 43.5 6.5 59 56-116 27-96 (539)
100 PRK13398 3-deoxy-7-phosphohept 59.6 59 0.0013 35.6 9.9 83 25-116 13-98 (266)
101 PF13199 Glyco_hydro_66: Glyco 57.5 17 0.00037 43.9 5.7 80 55-134 116-210 (559)
102 COG3589 Uncharacterized conser 57.5 22 0.00047 40.0 6.1 72 45-123 4-76 (360)
103 PRK10933 trehalose-6-phosphate 57.3 21 0.00047 43.0 6.7 56 58-116 34-101 (551)
104 KOG0626 Beta-glucosidase, lact 56.7 21 0.00045 42.5 6.1 113 58-180 92-208 (524)
105 PF03659 Glyco_hydro_71: Glyco 55.9 41 0.00089 38.9 8.3 54 54-116 14-67 (386)
106 PF08308 PEGA: PEGA domain; I 55.9 11 0.00024 32.2 2.9 44 494-549 3-46 (71)
107 smart00518 AP2Ec AP endonuclea 55.3 80 0.0017 33.9 10.1 101 47-180 3-104 (273)
108 TIGR03849 arch_ComA phosphosul 54.5 26 0.00056 37.8 5.9 54 55-118 69-122 (237)
109 PF01261 AP_endonuc_2: Xylose 54.4 80 0.0017 31.7 9.5 104 57-188 27-137 (213)
110 KOG2024 Beta-Glucuronidase GUS 54.1 20 0.00043 39.0 5.0 57 458-515 73-132 (297)
111 PF01791 DeoC: DeoC/LacD famil 54.1 5.3 0.00011 42.5 0.7 53 60-115 79-131 (236)
112 PRK08673 3-deoxy-7-phosphohept 51.4 64 0.0014 36.6 8.8 82 26-116 80-164 (335)
113 PF11324 DUF3126: Protein of u 50.7 44 0.00096 28.7 5.5 31 499-529 25-57 (63)
114 PF14587 Glyco_hydr_30_2: O-Gl 50.4 1.2E+02 0.0027 35.0 10.8 139 67-221 57-227 (384)
115 PRK09875 putative hydrolase; P 50.0 1.7E+02 0.0036 32.6 11.6 89 27-135 7-95 (292)
116 cd06592 GH31_glucosidase_KIAA1 49.3 52 0.0011 36.5 7.7 68 52-122 25-96 (303)
117 KOG4729 Galactoside-binding le 49.0 20 0.00043 38.8 4.0 82 760-843 144-233 (265)
118 TIGR02401 trehalose_TreY malto 48.8 37 0.0008 42.9 6.8 64 55-118 14-87 (825)
119 PLN02361 alpha-amylase 47.8 38 0.00082 39.3 6.4 57 60-116 32-96 (401)
120 cd06547 GH85_ENGase Endo-beta- 46.3 38 0.00083 38.4 6.0 114 73-218 32-148 (339)
121 cd06589 GH31 The enzymes of gl 46.2 67 0.0015 34.8 7.8 65 55-120 22-90 (265)
122 PRK14582 pgaB outer membrane N 46.0 92 0.002 38.6 9.5 125 41-184 313-467 (671)
123 TIGR02100 glgX_debranch glycog 45.6 30 0.00065 43.0 5.5 55 62-116 189-265 (688)
124 PRK14510 putative bifunctional 43.6 34 0.00074 45.3 5.8 56 61-116 191-267 (1221)
125 PRK14507 putative bifunctional 43.4 46 0.001 45.2 6.9 60 55-118 756-829 (1693)
126 PRK14511 maltooligosyl trehalo 43.3 50 0.0011 41.9 6.9 63 54-120 17-93 (879)
127 PF14701 hDGE_amylase: glucano 43.2 96 0.0021 36.3 8.6 94 55-154 20-130 (423)
128 cd06591 GH31_xylosidase_XylS X 43.0 49 0.0011 37.0 6.2 65 55-120 22-90 (319)
129 PRK12677 xylose isomerase; Pro 41.8 1.4E+02 0.0031 34.4 9.8 88 58-164 32-124 (384)
130 cd06565 GH20_GcnA-like Glycosy 41.8 1.3E+02 0.0028 33.4 9.3 59 55-116 15-80 (301)
131 cd06416 GH25_Lys1-like Lys-1 i 41.6 55 0.0012 33.7 6.0 89 45-136 54-157 (196)
132 TIGR02455 TreS_stutzeri trehal 41.0 57 0.0012 40.0 6.6 76 55-134 76-176 (688)
133 PF07691 PA14: PA14 domain; I 40.5 1.2E+02 0.0026 28.9 7.8 70 471-548 47-122 (145)
134 COG1306 Uncharacterized conser 40.4 66 0.0014 35.7 6.3 59 55-116 75-144 (400)
135 cd06603 GH31_GANC_GANAB_alpha 39.6 64 0.0014 36.4 6.5 68 55-123 22-91 (339)
136 cd06545 GH18_3CO4_chitinase Th 39.3 1.4E+02 0.0031 31.9 8.9 96 87-211 36-132 (253)
137 TIGR00677 fadh2_euk methylenet 39.2 1.1E+02 0.0023 33.9 8.0 108 43-164 130-250 (281)
138 cd06598 GH31_transferase_CtsZ 38.7 66 0.0014 35.9 6.4 67 55-121 22-95 (317)
139 PF08531 Bac_rhamnosid_N: Alph 38.7 38 0.00082 34.4 4.1 22 638-659 7-28 (172)
140 PRK03705 glycogen debranching 38.3 48 0.001 41.0 5.6 55 62-116 184-262 (658)
141 KOG3833 Uncharacterized conser 38.1 33 0.00071 38.2 3.6 53 58-116 444-499 (505)
142 PF08531 Bac_rhamnosid_N: Alph 38.1 79 0.0017 32.1 6.3 55 493-548 6-67 (172)
143 cd06602 GH31_MGAM_SI_GAA This 38.0 66 0.0014 36.3 6.3 74 49-123 13-93 (339)
144 TIGR02102 pullulan_Gpos pullul 37.7 56 0.0012 42.7 6.3 21 96-116 555-575 (1111)
145 cd06568 GH20_SpHex_like A subg 37.7 71 0.0015 36.0 6.5 59 55-116 16-95 (329)
146 KOG0718 Molecular chaperone (D 36.4 48 0.001 38.8 4.8 21 825-845 504-524 (546)
147 PLN02877 alpha-amylase/limit d 36.3 62 0.0013 41.6 6.2 21 96-116 466-486 (970)
148 COG2884 FtsE Predicted ATPase 36.2 31 0.00068 36.2 3.0 23 760-783 135-157 (223)
149 PRK13209 L-xylulose 5-phosphat 35.8 2E+02 0.0044 31.0 9.5 105 53-186 53-161 (283)
150 cd06601 GH31_lyase_GLase GLase 34.7 1.9E+02 0.0041 32.7 9.2 72 49-121 13-89 (332)
151 COG3915 Uncharacterized protei 34.7 1.6E+02 0.0034 29.2 7.2 48 62-115 39-88 (155)
152 cd06599 GH31_glycosidase_Aec37 34.5 93 0.002 34.7 6.7 66 56-121 28-98 (317)
153 PF01055 Glyco_hydro_31: Glyco 33.9 79 0.0017 36.7 6.3 68 55-123 41-110 (441)
154 COG5309 Exo-beta-1,3-glucanase 33.8 3.5E+02 0.0077 29.9 10.4 119 55-221 61-179 (305)
155 cd06600 GH31_MGAM-like This fa 33.7 85 0.0018 35.1 6.3 72 49-121 13-89 (317)
156 cd02742 GH20_hexosaminidase Be 33.6 91 0.002 34.6 6.4 60 54-116 13-92 (303)
157 PRK00042 tpiA triosephosphate 33.5 67 0.0015 34.9 5.2 50 62-117 78-127 (250)
158 COG5520 O-Glycosyl hydrolase [ 33.0 8.2E+02 0.018 28.3 13.7 114 68-211 77-206 (433)
159 PRK09856 fructoselysine 3-epim 32.8 64 0.0014 34.6 5.0 58 58-119 91-153 (275)
160 KOG0683 Glutamine synthetase [ 32.7 49 0.0011 37.6 4.0 46 83-129 202-259 (380)
161 cd06604 GH31_glucosidase_II_Ma 32.6 99 0.0022 34.8 6.6 73 49-122 13-90 (339)
162 PF02228 Gag_p19: Major core p 32.1 21 0.00045 31.7 0.8 37 55-108 20-56 (92)
163 TIGR02103 pullul_strch alpha-1 31.9 70 0.0015 40.9 5.7 21 96-116 404-424 (898)
164 PF12876 Cellulase-like: Sugar 31.5 75 0.0016 28.4 4.4 47 172-218 7-62 (88)
165 PLN03036 glutamine synthetase; 31.3 1.3E+02 0.0028 35.4 7.3 67 57-129 230-308 (432)
166 cd06595 GH31_xylosidase_XylS-l 30.7 1.2E+02 0.0026 33.5 6.7 65 55-119 23-97 (292)
167 PF10566 Glyco_hydro_97: Glyco 30.7 1.7E+02 0.0037 32.3 7.7 115 54-176 29-159 (273)
168 cd00311 TIM Triosephosphate is 30.1 94 0.002 33.6 5.6 49 63-117 77-125 (242)
169 cd06597 GH31_transferase_CtsY 30.1 1.2E+02 0.0025 34.4 6.6 73 49-121 13-110 (340)
170 COG1735 Php Predicted metal-de 28.7 2.4E+02 0.0051 31.7 8.3 153 26-221 16-173 (316)
171 PF00728 Glyco_hydro_20: Glyco 28.0 98 0.0021 34.6 5.6 60 54-116 15-93 (351)
172 smart00481 POLIIIAc DNA polyme 27.8 1.7E+02 0.0037 24.4 5.7 43 59-114 17-59 (67)
173 TIGR00676 fadh2 5,10-methylene 27.8 2.3E+02 0.0049 31.0 8.2 108 42-164 125-246 (272)
174 PRK09267 flavodoxin FldA; Vali 27.8 4.3E+02 0.0093 26.2 9.7 74 37-113 44-117 (169)
175 cd01299 Met_dep_hydrolase_A Me 27.7 1.4E+02 0.0031 33.0 6.8 59 55-116 118-180 (342)
176 PF00120 Gln-synt_C: Glutamine 27.7 1.2E+02 0.0026 32.8 5.9 61 55-120 67-139 (259)
177 PRK08645 bifunctional homocyst 27.6 2.1E+02 0.0044 35.2 8.6 110 39-164 460-578 (612)
178 PRK13210 putative L-xylulose 5 27.3 1E+02 0.0022 33.2 5.3 60 57-117 94-154 (284)
179 TIGR00419 tim triosephosphate 27.2 1.2E+02 0.0025 32.1 5.6 44 63-116 74-117 (205)
180 TIGR00433 bioB biotin syntheta 27.0 96 0.0021 33.8 5.2 52 60-114 123-176 (296)
181 PRK10076 pyruvate formate lyas 26.6 3E+02 0.0065 29.1 8.5 126 55-214 52-209 (213)
182 KOG0496 Beta-galactosidase [Ca 26.2 23 0.00049 43.0 0.1 58 765-822 332-389 (649)
183 PRK11024 colicin uptake protei 26.1 4.4E+02 0.0096 25.7 9.1 52 54-115 85-137 (141)
184 COG1891 Uncharacterized protei 26.0 23 0.00049 36.4 0.0 67 41-115 115-186 (235)
185 TIGR02804 ExbD_2 TonB system t 26.0 5.1E+02 0.011 24.6 9.3 15 97-111 99-113 (121)
186 COG0366 AmyA Glycosidases [Car 26.0 85 0.0018 36.6 4.8 56 61-116 33-97 (505)
187 TIGR01361 DAHP_synth_Bsub phos 25.8 2.1E+02 0.0046 31.2 7.4 83 25-116 11-96 (260)
188 PRK12331 oxaloacetate decarbox 25.3 1.4E+02 0.0031 35.2 6.4 55 49-115 88-142 (448)
189 cd06570 GH20_chitobiase-like_1 25.2 2.9E+02 0.0063 31.0 8.6 60 54-116 15-88 (311)
190 PRK15492 triosephosphate isome 25.1 1.3E+02 0.0029 32.8 5.7 49 63-117 87-135 (260)
191 COG1523 PulA Type II secretory 25.0 1E+02 0.0022 38.4 5.2 55 62-116 205-285 (697)
192 PRK09997 hydroxypyruvate isome 24.9 1.1E+02 0.0024 32.7 5.1 60 57-116 85-144 (258)
193 KOG0259 Tyrosine aminotransfer 24.8 83 0.0018 36.2 4.1 86 26-115 151-238 (447)
194 PF08306 Glyco_hydro_98M: Glyc 24.7 57 0.0012 36.5 2.8 59 43-112 104-169 (324)
195 cd06563 GH20_chitobiase-like T 24.6 2.8E+02 0.006 31.6 8.5 60 54-116 15-106 (357)
196 cd06418 GH25_BacA-like BacA is 24.5 2.4E+02 0.0052 29.9 7.3 90 55-166 50-140 (212)
197 cd04882 ACT_Bt0572_2 C-termina 24.2 1.4E+02 0.0029 24.2 4.4 55 56-112 10-64 (65)
198 TIGR02801 tolR TolR protein. T 24.0 5.2E+02 0.011 24.6 9.0 15 97-111 108-122 (129)
199 TIGR01698 PUNP purine nucleoti 23.9 1.2E+02 0.0025 32.8 4.9 40 36-75 47-87 (237)
200 PTZ00372 endonuclease 4-like p 23.0 4.9E+02 0.011 30.6 10.0 115 37-183 153-275 (413)
201 PRK09432 metF 5,10-methylenete 22.9 1.6E+02 0.0036 32.7 6.0 88 62-165 168-266 (296)
202 PRK12858 tagatose 1,6-diphosph 22.9 93 0.002 35.4 4.1 62 53-116 102-163 (340)
203 cd00537 MTHFR Methylenetetrahy 22.5 2.5E+02 0.0054 30.5 7.3 103 48-164 138-249 (274)
204 TIGR00542 hxl6Piso_put hexulos 22.5 4.2E+02 0.0092 28.5 9.1 101 55-184 50-154 (279)
205 cd06569 GH20_Sm-chitobiase-lik 22.5 1.9E+02 0.0041 34.1 6.7 59 55-116 20-117 (445)
206 PRK14581 hmsF outer membrane N 22.4 2.7E+02 0.0059 34.7 8.2 62 53-114 68-137 (672)
207 PRK11267 biopolymer transport 22.2 5.8E+02 0.013 25.0 9.1 50 54-114 81-132 (141)
208 PF14307 Glyco_tran_WbsX: Glyc 22.0 1.6E+02 0.0034 33.4 5.7 43 31-76 150-194 (345)
209 PRK14567 triosephosphate isome 22.0 1.7E+02 0.0036 32.0 5.7 49 63-117 78-126 (253)
210 PLN03059 beta-galactosidase; P 21.8 4.1E+02 0.009 33.9 9.6 43 618-660 468-517 (840)
211 PRK14565 triosephosphate isome 21.8 1.5E+02 0.0032 32.1 5.2 49 63-117 78-126 (237)
212 cd06562 GH20_HexA_HexB-like Be 21.6 3.8E+02 0.0082 30.4 8.7 63 54-116 15-90 (348)
213 PLN02429 triosephosphate isome 21.6 1.4E+02 0.0031 33.5 5.2 49 63-117 140-188 (315)
214 cd07937 DRE_TIM_PC_TC_5S Pyruv 21.6 2.1E+02 0.0047 31.2 6.6 49 54-114 88-136 (275)
215 PF08924 DUF1906: Domain of un 21.6 2E+02 0.0044 28.1 5.7 92 55-166 36-128 (136)
216 PTZ00333 triosephosphate isome 21.5 1.8E+02 0.0038 31.8 5.8 48 64-117 83-130 (255)
217 PLN02784 alpha-amylase 21.4 1.9E+02 0.004 37.0 6.5 57 60-116 524-588 (894)
218 TIGR00587 nfo apurinic endonuc 21.3 5.9E+02 0.013 27.6 9.9 83 60-164 14-98 (274)
219 PRK14566 triosephosphate isome 21.3 1.8E+02 0.0039 31.9 5.7 49 63-117 88-136 (260)
220 smart00854 PGA_cap Bacterial c 21.2 9.8E+02 0.021 25.2 12.2 50 51-113 58-107 (239)
221 PF01075 Glyco_transf_9: Glyco 21.0 79 0.0017 33.2 3.0 76 40-118 106-194 (247)
222 cd06564 GH20_DspB_LnbB-like Gl 21.0 2.7E+02 0.0057 31.3 7.3 59 55-116 15-102 (326)
223 TIGR03234 OH-pyruv-isom hydrox 20.7 1.4E+02 0.0031 31.6 4.9 59 57-116 84-143 (254)
224 PF00282 Pyridoxal_deC: Pyrido 20.5 1.6E+02 0.0036 33.6 5.6 71 38-115 139-230 (373)
225 PRK07534 methionine synthase I 20.3 1E+03 0.022 27.0 11.7 73 99-209 221-295 (336)
226 smart00758 PA14 domain in bact 20.2 3.6E+02 0.0079 25.5 7.2 67 471-546 45-112 (136)
227 PRK14040 oxaloacetate decarbox 20.2 1.8E+02 0.0039 35.7 6.0 54 49-114 89-142 (593)
228 KOG3698 Hyaluronoglucosaminida 20.1 4.3E+02 0.0093 32.1 8.6 70 38-117 12-95 (891)
229 KOG0622 Ornithine decarboxylas 20.0 1.9E+02 0.0041 33.7 5.7 63 54-117 190-253 (448)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=1.4e-215 Score=1872.57 Aligned_cols=834 Identities=65% Similarity=1.208 Sum_probs=766.2
Q ss_pred hhhHHHHHHHHHHHhhhccccceeEEEecCcEEECCEEeEEEEEEeeCCCCCHhHHHHHHHHHHHCCCCEEEeccccCcc
Q 003044 4 LFVYRMLIVFCLSLCLCCHHIHCSVTYDRKALLINGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVH 83 (854)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~idG~~~~~~sg~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~h 83 (854)
|.|..+|.+++|+.+.+.++...+|++|+++|+|||+|++|+||+|||||+||++|+|+|+||||+|+|||+||||||+|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~H 85 (840)
T PLN03059 6 LVVFLLLFLLFLLSSSWVSHGSASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGH 85 (840)
T ss_pred eehhhHHHHHHHhhhhhhccceeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEeccccc
Confidence 33444443333444446677778999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCeEeecCChhHHHHHHHHHHHHHHHH
Q 003044 84 EPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLM 163 (854)
Q Consensus 84 Ep~~G~ydf~g~~dl~~fl~la~~~gL~vilrpGPyi~aEw~~GGlP~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l 163 (854)
||+||+|||+|++||++||++|+|+||+|||||||||||||++||||.||+++|+|++|++||+|+++|++|+++|+++|
T Consensus 86 Ep~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l 165 (840)
T PLN03059 86 EPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMM 165 (840)
T ss_pred CCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccCCceEEecccccccccccccCcccHHHHHHHHHHHHHcCCCcceeecCCCCCCCccccCCCCcccCcCCCC
Q 003044 164 KSENLFESQGGPIILSQIENEYGAQSKLLGAAGHNYMTWAAKMAVEMGTGVPWVMCKEEDAPDPVINSCNGFYCDAFTPN 243 (854)
Q Consensus 164 ~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~vi~~~ng~~~~~~~~~ 243 (854)
+++++++++||||||+|||||||++...++.+|++||+||++|++++|++|||+||++.++++++++||||.+|+.|.+.
T Consensus 166 ~~~~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg~~~~~~v~~t~Ng~~~~~f~~~ 245 (840)
T PLN03059 166 KSEKLFEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYCENFKPN 245 (840)
T ss_pred hhcceeecCCCcEEEEEecccccceecccCcchHHHHHHHHHHHHHcCCCcceEECCCCCCCccceecCCCchhhhcccC
Confidence 98899999999999999999999987777778999999999999999999999999998788899999999999999888
Q ss_pred CCCCCeEEeeeCcccccccCCCCCcCCHHHHHHHHHHHHHhCCeeeeeeEeeccCCCCCCCCCCcccccccCCCCCCCCC
Q 003044 244 QPYKPTIWTEAWSGWFTEFGGPIHQRPVQDLAFAAARFIQKGGSFINYYMYHGGTNFGRSAGGPFITTSYDYDAPIDEYG 323 (854)
Q Consensus 244 ~p~~P~~~tE~~~Gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~tSYDY~Api~E~G 323 (854)
++.+|+|+||||+|||++||++++.|+++|++..++++|++|+|++||||||||||||||||+++++|||||||||+|+|
T Consensus 246 ~~~~P~m~tE~w~GWf~~wG~~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL~E~G 325 (840)
T PLN03059 246 KDYKPKMWTEAWTGWYTEFGGAVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYG 325 (840)
T ss_pred CCCCCcEEeccCchhHhhcCCCCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCCccccccccCCcccccc
Confidence 88899999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHhhhccccCCCCccccCCCccceeeeccCCCceeeEeeecCCccceEEEecceeeccCCccee
Q 003044 324 LIRQPKYGHLKELHRAIKMCERALVSADPIVTSLGGFQQAHVYSSESGDCAAFLSNYDTKSAARVLFNNMHYNLPPWSIS 403 (854)
Q Consensus 324 ~~~t~ky~~lr~l~~~i~~~~~~l~~~~p~~~~~~~~~~~~~y~~~~~~~~~fl~n~~~~~~~~v~~~~~~~~~~~~s~~ 403 (854)
++++|||.+||++|++++.++++|+..+|....+++.+++.+|...+ .|++|+.|.+.+...+|+|+|.+|.||+||||
T Consensus 326 ~~t~pKy~~lr~l~~~~~~~~~~l~~~~p~~~~lg~~~ea~~y~~~~-~caaFl~n~~~~~~~~v~f~g~~y~lp~~Svs 404 (840)
T PLN03059 326 LPREPKWGHLRDLHKAIKLCEPALVSVDPTVTSLGSNQEAHVFKSKS-ACAAFLANYDTKYSVKVTFGNGQYDLPPWSVS 404 (840)
T ss_pred CcchhHHHHHHHHHHHHHhcCccccCCCCceeccCCceeEEEccCcc-chhhheeccCCCCceeEEECCcccccCcccee
Confidence 99668999999999999999898988888888899999999998666 79999999998899999999999999999999
Q ss_pred ecCCCcceeeccceeccccccccccccccccccccccccccccCCCCCccccccchhcccCCCCCccEEEEEEEecCCCC
Q 003044 404 VLPDCRNVVFNTAKVGVQTSQMEMLPANAEMFSWESYFEDISSLDDSSTFTTQGLLEQINVTRDASDYLWYITSVDIGSS 483 (854)
Q Consensus 404 i~~~~~~~~~~t~~v~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Eql~~t~d~~GYl~Y~t~i~~~~~ 483 (854)
|+|||+.++|+|++++.|++.++..+. ...+.|+++.|++.+...+.++++..++||+++|+|.+||+||+|+|....+
T Consensus 405 ilpd~~~~lfnta~v~~q~~~~~~~~~-~~~~~w~~~~e~~~~~~~~~~~~~e~l~e~~n~t~d~~dYlwY~t~i~~~~~ 483 (840)
T PLN03059 405 ILPDCKTAVFNTARLGAQSSQMKMNPV-GSTFSWQSYNEETASAYTDDTTTMDGLWEQINVTRDATDYLWYMTEVHIDPD 483 (840)
T ss_pred ecccccceeeeccccccccceeecccc-cccccceeecccccccccCCCcchhhHHHhhcccCCCCceEEEEEEEeecCC
Confidence 999999999999999988877755433 2456899999995542124678888899999999999999999999988766
Q ss_pred cccccCCCCceEEeCCcceEEEEEECCEEEEEEEcccccceeEEEeeeeccCCCCEEEEEEeccCCccccCCCCcccccc
Q 003044 484 ESFLHGGELPTLIVQSTGHALHIFINGQLSGSAFGTREARRFMYTGKVNLRAGRNKIALLSVAVGLPNVGGHYETWNTGI 563 (854)
Q Consensus 484 ~~~~~~g~~~~L~i~~~~D~~~VfVng~~~G~~~~~~~~~~~~~~~~i~l~~g~n~L~ILven~GrvN~G~~~~~~~KGI 563 (854)
+...+++.+++|+|.+++|++||||||+++|++++......++++.+++++.|.|+|+||||||||+|||++|+++.|||
T Consensus 484 ~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~~~~~~~~~~~~~~v~l~~g~n~L~iLse~vG~~NyG~~le~~~kGI 563 (840)
T PLN03059 484 EGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVYGELSNPKLTFSQNVKLTVGINKISLLSVAVGLPNVGLHFETWNAGV 563 (840)
T ss_pred ccccccCCCceEEEcccCcEEEEEECCEEEEEEEeecCCcceEEecccccCCCceEEEEEEEeCCCCccCcccccccccc
Confidence 54456778889999999999999999999999998776677888888889999999999999999999999999999999
Q ss_pred cccEEEecccCCcccCccCCceEecCCccccccccCCCCCCCccccccccccccCCCceEEEEEEECCCCCCCeEEeeCC
Q 003044 564 LGPVALHGLDQGKWDLSWQKWTYQVGLRGEAMNLVSPNGISSVEWMQASLAVQRQQPLMWHKAYFNAPEGDEPLALDMEG 643 (854)
Q Consensus 564 ~g~V~l~g~~~~~~~L~~~~W~~~~~L~ge~~~~~~~~~~~~~~w~~~~~~~~~~~~~~wyk~~F~~p~~~dpt~Ld~~g 643 (854)
+|+|+|+|+++++.+|+++.|.|+++|+||.++|+..++...+.|.+.+..+. .+||+|||++|++|++.|||||||+|
T Consensus 564 ~g~V~i~g~~~g~~dls~~~W~y~lgL~GE~~~i~~~~~~~~~~W~~~~~~~~-~~p~twYK~~Fd~p~g~Dpv~LDm~g 642 (840)
T PLN03059 564 LGPVTLKGLNEGTRDLSGWKWSYKIGLKGEALSLHTITGSSSVEWVEGSLLAQ-KQPLTWYKTTFDAPGGNDPLALDMSS 642 (840)
T ss_pred cccEEEecccCCceecccCccccccCccceeccccccCCCCCccccccccccC-CCCceEEEEEEeCCCCCCCEEEeccc
Confidence 99999999989999999889999999999999998876566788976543333 45799999999999999999999999
Q ss_pred CccEEEEECCeeeeeeecccc-cCCCCCccccCCcCCCcccCCCCCCceeEEecCcccccCCcceEEEEEeeCCCCCcce
Q 003044 644 MGKGQIWINGQSVGRYWTAYA-KGDCNGCNYVGGYRPTKCQLGCGQPTQRWYHVPRSWLKPTQNFLVVFEELGGNPSRIS 722 (854)
Q Consensus 644 ~gKG~vwVNG~nLGRYW~~~~-~g~~~~~~~~G~~~~~~~~~~~~~PQqtlYhVP~~~Lk~g~N~lvifEe~g~~p~~i~ 722 (854)
||||+|||||+||||||+.++ .+.|+.|+|+|.|++.||+||||+|||||||||++|||+|+|+||||||+|++|..|+
T Consensus 643 mGKG~aWVNG~nIGRYW~~~a~~~gC~~c~y~g~~~~~kc~~~cggP~q~lYHVPr~~Lk~g~N~lViFEe~gg~p~~I~ 722 (840)
T PLN03059 643 MGKGQIWINGQSIGRHWPAYTAHGSCNGCNYAGTFDDKKCRTNCGEPSQRWYHVPRSWLKPSGNLLIVFEEWGGNPAGIS 722 (840)
T ss_pred CCCeeEEECCcccccccccccccCCCccccccccccchhhhccCCCceeEEEeCcHHHhccCCceEEEEEecCCCCCceE
Confidence 999999999999999997643 3345899999999999999999999999999999999999999999999999999999
Q ss_pred eeecccccccccccccCcCccccccccCCCCcccCCCceEEecCCCCeEeeEeeeccCCCCCCCCCCCCCCccCCChhhh
Q 003044 723 LVKRSVTSVCAEVAEYHPTIKNWHIESYGKPEEFHSPKVHLRCSPGHTISSIKFASFGTPLGTCGSYQQGPCHSPTSYDI 802 (854)
Q Consensus 723 ~~~~~~~~vc~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~L~C~~g~~Is~I~~A~YGR~~~~C~~~~~~~C~~~~s~~~ 802 (854)
|.+++.++||..++|.||++++|.+.+..+ .+.....++|+|+.|++||+|.+|+|||+.++|++++.++|++++++++
T Consensus 723 ~~~~~~~~~c~~~~e~~p~~~~w~~~~~~~-~~~~~~~~~L~C~~G~~Is~I~fAsYGrp~gtC~~~~~g~C~a~~S~~v 801 (840)
T PLN03059 723 LVKRTTDSVCADIFEGQPALKNWQIIASGK-VNSLQPKAHLWCPPGQKISKIKFASFGVPQGTCGSFREGSCHAHKSYDA 801 (840)
T ss_pred EEEeecCcccccccccCCcccccccccccc-ccccCCcEEEECCCCceEEEEEEecCCCCCCCCCCCCCCCEeCCcHHHH
Confidence 999999999999999998899999944433 3457888999999999997899999999889999999999999999999
Q ss_pred HhhhcCCCCceeEEecCCCccCCCCCCCcceEEEEEEee
Q 003044 803 LEKKCVGKQRCAVTISNSNFGVDPCPNVLKRLSVEAICS 841 (854)
Q Consensus 803 V~~~C~Gk~~C~i~a~~~~Fg~DPCpgt~KYL~V~Y~C~ 841 (854)
|+++|+||++|+|.+++.+||.|||+||+|||+|+|.|+
T Consensus 802 V~kaC~Gk~~CsV~asn~~FggDPC~gt~KyL~V~~~Cs 840 (840)
T PLN03059 802 FERNCIGKQSCSVTVAPEVFGGDPCPDSMKKLSVEAVCS 840 (840)
T ss_pred HHHHCCCCCceEEEeccceecCCCCCCceeEEEEEEEeC
Confidence 999999999999999999996699999999999999994
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.4e-151 Score=1282.38 Aligned_cols=629 Identities=61% Similarity=1.125 Sum_probs=579.5
Q ss_pred ceeEEEecCcEEECCEEeEEEEEEeeCCCCCHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHH
Q 003044 25 HCSVTYDRKALLINGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKT 104 (854)
Q Consensus 25 ~~~v~~d~~~~~idG~~~~~~sg~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~l 104 (854)
.+.|++|+++|+|||+|++++||++||||++|++|+|+|+|||++|+|+|+||||||.|||+||+|||+|+.||++||++
T Consensus 17 ~~~v~yd~~~~~idG~r~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFikl 96 (649)
T KOG0496|consen 17 SFNVTYDKRSLLIDGQRFILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFIKL 96 (649)
T ss_pred eeEEeccccceeecCCeeEEEEeccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEecCceeeeecCCCCCCcccccCCCeEeecCChhHHHHHHHHHHHHHHHHhhcccccccCCceEEeccccc
Q 003044 105 IQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENE 184 (854)
Q Consensus 105 a~~~gL~vilrpGPyi~aEw~~GGlP~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENE 184 (854)
|++.||+|+||+||||||||++||+|.||..+|++.+||+|++|+++|++|+++|++++| +|+++|||||||+|||||
T Consensus 97 ~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk--~L~~~qGGPIIl~QIENE 174 (649)
T KOG0496|consen 97 IHKAGLYVILRIGPYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMK--KLFASQGGPIILVQIENE 174 (649)
T ss_pred HHHCCeEEEecCCCeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHH--HHHhhcCCCEEEEEeech
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred ccccccccCcccHHHHHHHHHHHHHcCCCcceeecCCCCCCCccccCCCCccc-CcCC-CCCCCCCeEEeeeCccccccc
Q 003044 185 YGAQSKLLGAAGHNYMTWAAKMAVEMGTGVPWVMCKEEDAPDPVINSCNGFYC-DAFT-PNQPYKPTIWTEAWSGWFTEF 262 (854)
Q Consensus 185 yg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~vi~~~ng~~~-~~~~-~~~p~~P~~~tE~~~Gwf~~w 262 (854)
||.+...|++..++|++|-..|+...+.+|||+||.+.++|++++++|||.+| +.|. +++|++|+||||+|+|||++|
T Consensus 175 YG~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd~~in~cng~~c~~~f~~pn~~~kP~~wtE~wtgwf~~w 254 (649)
T KOG0496|consen 175 YGNYLRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPDPGINTCNGFYCGDTFKRPNSPNKPLVWTENWTGWFTHW 254 (649)
T ss_pred hhHHHHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCCccccccCCccchhhhccCCCCCCCceecccccchhhhh
Confidence 99887778888999999999999999999999999999999999999999999 8998 999999999999999999999
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhCCeeeeeeEeeccCCCCCCCCCCcccccccCCCCCCCCCCCCchhHHHHHHHHHHHHh
Q 003044 263 GGPIHQRPVQDLAFAAARFIQKGGSFINYYMYHGGTNFGRSAGGPFITTSYDYDAPIDEYGLIRQPKYGHLKELHRAIKM 342 (854)
Q Consensus 263 G~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~tSYDY~Api~E~G~~~t~ky~~lr~l~~~i~~ 342 (854)
|++++.|++++++..+++++++|+|++||||||||||||++|| ++.+|||||||||| |..++|||.|+|.+|..++.
T Consensus 255 Gg~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~G-~~~atsy~~dap~d--gl~~~pk~ghlk~~hts~d~ 331 (649)
T KOG0496|consen 255 GGPHPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTNG-PFIATSYDYDAPLD--GLLRQPKYGHLKPLHTSYDY 331 (649)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCcccC-cccccccccccccc--hhhcCCCccccccchhhhhh
Confidence 9999999999999999999999999999999999999999998 99999999999999 99999999999999999999
Q ss_pred hhccccCCCCccccCCCccceeeeccCCCceeeEeeecCCccceEEEecceeeccCCcceeecCCCcceeeccceecccc
Q 003044 343 CERALVSADPIVTSLGGFQQAHVYSSESGDCAAFLSNYDTKSAARVLFNNMHYNLPPWSISVLPDCRNVVFNTAKVGVQT 422 (854)
Q Consensus 343 ~~~~l~~~~p~~~~~~~~~~~~~y~~~~~~~~~fl~n~~~~~~~~v~~~~~~~~~~~~s~~i~~~~~~~~~~t~~v~~~~ 422 (854)
+++.+..+++...++++ ..+.|..|+.|++......+.|++.++.+|+|+++|++||++++|+|+++.++
T Consensus 332 ~ep~lv~gd~~~~kyg~---------~~~~C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck~~~~nta~~~~~- 401 (649)
T KOG0496|consen 332 CEPALVAGDITTAKYGN---------LREACAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCKTVVYNTAKVMAQ- 401 (649)
T ss_pred cCccccccCcccccccc---------hhhHHHHHHhcCCCCCCCccccCCCccccCceeEEechhhcchhhhccccccc-
Confidence 99998888765544433 33458999999998888999999999999999999999999999999977431
Q ss_pred ccccccccccccccccccccccccCCCCCccccccchhcccCCCCCccEEEEEEEecCCCCcccccCCCCceEEeC-Ccc
Q 003044 423 SQMEMLPANAEMFSWESYFEDISSLDDSSTFTTQGLLEQINVTRDASDYLWYITSVDIGSSESFLHGGELPTLIVQ-STG 501 (854)
Q Consensus 423 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Eql~~t~d~~GYl~Y~t~i~~~~~~~~~~~g~~~~L~i~-~~~ 501 (854)
|....||++ +|..++ .+||++|++.++.+.+++ +.|+|. +++
T Consensus 402 --------------~~~~~e~~~-------------~~~~~~---~~~~ll~~~~~t~d~sd~-------t~~~i~ls~g 444 (649)
T KOG0496|consen 402 --------------WISFTEPIP-------------SEAVGQ---SFGGLLEQTNLTKDKSDT-------TSLKIPLSLG 444 (649)
T ss_pred --------------cccccCCCc-------------cccccC---cceEEEEEEeeccccCCC-------ceEeeccccc
Confidence 443334333 566655 788999999998765552 468888 999
Q ss_pred eEEEEEECCEEEEEEEcccccceeEEEeeeeccCCCCEEEEEEeccCCccccCCCCcccccccccEEEecccCCcccCcc
Q 003044 502 HALHIFINGQLSGSAFGTREARRFMYTGKVNLRAGRNKIALLSVAVGLPNVGGHYETWNTGILGPVALHGLDQGKWDLSW 581 (854)
Q Consensus 502 D~~~VfVng~~~G~~~~~~~~~~~~~~~~i~l~~g~n~L~ILven~GrvN~G~~~~~~~KGI~g~V~l~g~~~~~~~L~~ 581 (854)
|++||||||+++|+++++.....+.+..++.|..|.|+|+|||||+||+||| +++++.|||+|+|+|+|. +++++
T Consensus 445 ~~~hVfvNg~~~G~~~g~~~~~~~~~~~~~~l~~g~n~l~iL~~~~G~~n~G-~~e~~~~Gi~g~v~l~g~----~~l~~ 519 (649)
T KOG0496|consen 445 HALHVFVNGEFAGSLHGNNEKIKLNLSQPVGLKAGENKLALLSENVGLPNYG-HFENDFKGILGPVYLNGL----IDLTW 519 (649)
T ss_pred ceEEEEECCEEeeeEeccccceeEEeecccccccCcceEEEEEEecCCCCcC-cccccccccccceEEeee----eccce
Confidence 9999999999999999976666778888888999999999999999999999 889999999999999997 57877
Q ss_pred CCceEecCCccccccccCCCCCCCccccccccccccCCCceEEEEEEECCCCCCCeEEeeCCCccEEEEECCeeeeeeec
Q 003044 582 QKWTYQVGLRGEAMNLVSPNGISSVEWMQASLAVQRQQPLMWHKAYFNAPEGDEPLALDMEGMGKGQIWINGQSVGRYWT 661 (854)
Q Consensus 582 ~~W~~~~~L~ge~~~~~~~~~~~~~~w~~~~~~~~~~~~~~wyk~~F~~p~~~dpt~Ld~~g~gKG~vwVNG~nLGRYW~ 661 (854)
+.|.|+++|.+|.+.++.+++.++++|......+. .+|.+||+ +|++|++.+||||||.|||||+|||||+|||||||
T Consensus 520 ~~w~~~~gl~ge~~~~~~~~~~~~v~w~~~~~~~~-k~P~~w~k-~f~~p~g~~~t~Ldm~g~GKG~vwVNG~niGRYW~ 597 (649)
T KOG0496|consen 520 TKWPYKVGLKGEKLGLHTEEGSSKVKWKKLSNTAT-KQPLTWYK-TFDIPSGSEPTALDMNGWGKGQVWVNGQNIGRYWP 597 (649)
T ss_pred eecceecccccchhhccccccccccceeeccCccc-CCCeEEEE-EecCCCCCCCeEEecCCCcceEEEECCcccccccC
Confidence 78899999999999999988888899987755444 37889999 99999999999999999999999999999999998
Q ss_pred ccccCCCCCccccCCcCCCcccCCCCCCceeEEecCcccccCCcceEEEEEeeCCCCCcceeeecccccccccccc
Q 003044 662 AYAKGDCNGCNYVGGYRPTKCQLGCGQPTQRWYHVPRSWLKPTQNFLVVFEELGGNPSRISLVKRSVTSVCAEVAE 737 (854)
Q Consensus 662 ~~~~g~~~~~~~~G~~~~~~~~~~~~~PQqtlYhVP~~~Lk~g~N~lvifEe~g~~p~~i~~~~~~~~~vc~~~~e 737 (854)
++ | ||++|| ||++|||++.|.||||||+|++|..|+|+++.+..+|..+.|
T Consensus 598 ~~-----------G-------------~Q~~yh-vPr~~Lk~~~N~lvvfEee~~~p~~i~~~~~~~~~~~~~v~~ 648 (649)
T KOG0496|consen 598 SF-----------G-------------PQRTYH-VPRSWLKPSGNLLVVFEEEGGDPNGISFVTRPVLSTCAYVRE 648 (649)
T ss_pred CC-----------C-------------CceEEE-CcHHHhCcCCceEEEEEeccCCCccceEEEeEeeeEeeeccc
Confidence 75 5 866555 999999999999999999999999999999988899998876
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=6.1e-88 Score=739.80 Aligned_cols=297 Identities=43% Similarity=0.838 Sum_probs=231.2
Q ss_pred cEEECCEEeEEEEEEeeCCCCCHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCEEE
Q 003044 34 ALLINGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAH 113 (854)
Q Consensus 34 ~~~idG~~~~~~sg~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vi 113 (854)
+|+|||||++++|||+||||+||++|+|+|+||||+|+|||++|||||+|||+||+|||+|++||++||++|+|+||+||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCceeeeecCCCCCCcccccCCCeEeecCChhHHHHHHHHHHHHHHHHhhcccccccCCceEEecccccccccccccC
Q 003044 114 LRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLLG 193 (854)
Q Consensus 114 lrpGPyi~aEw~~GGlP~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~ 193 (854)
|||||||||||++||+|.||.+++++++|++||.|+++|++|+++|+++++ ++++++||||||+|||||||..
T Consensus 81 lrpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~GGpII~vQvENEyg~~----- 153 (319)
T PF01301_consen 81 LRPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIK--PLQYTNGGPIIMVQVENEYGSY----- 153 (319)
T ss_dssp EEEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHG--GGBGGGTSSEEEEEESSSGGCT-----
T ss_pred ecccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHH--hhhhcCCCceehhhhhhhhCCC-----
Confidence 999999999999999999999999999999999999999999999999999 8899999999999999999953
Q ss_pred cccHHHHHHHHHHHHHcCCC-cceeecCCC--------CCCCccccCCCCcccCc--------CCCCCCCCCeEEeeeCc
Q 003044 194 AAGHNYMTWAAKMAVEMGTG-VPWVMCKEE--------DAPDPVINSCNGFYCDA--------FTPNQPYKPTIWTEAWS 256 (854)
Q Consensus 194 ~~~~~y~~~l~~~~~~~g~~-vp~~~~~~~--------~~~~~vi~~~ng~~~~~--------~~~~~p~~P~~~tE~~~ 256 (854)
.++++||+.|++++++.+++ ++.++++.. +.++..+.+++++.|.. ..+.+|++|+|++|||+
T Consensus 154 ~~~~~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~~ 233 (319)
T PF01301_consen 154 GTDRAYMEALKDAYRDWGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFWG 233 (319)
T ss_dssp SS-HHHHHHHHHHHHHTT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEES
T ss_pred cccHhHHHHHHHHHHHhhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEecc
Confidence 37899999999999999998 667777652 12332344444444421 12557899999999999
Q ss_pred ccccccCCCCCcCCHHHHHHHHHHHHHhCCeeeeeeEeeccCCCCCCCCCCcc----cccccCCCCCCCCCCCCchhHHH
Q 003044 257 GWFTEFGGPIHQRPVQDLAFAAARFIQKGGSFINYYMYHGGTNFGRSAGGPFI----TTSYDYDAPIDEYGLIRQPKYGH 332 (854)
Q Consensus 257 Gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~----~tSYDY~Api~E~G~~~t~ky~~ 332 (854)
|||++||++++.+++++++..+++++++|.+ +||||||||||||+++|++.. +|||||+|||+|+|++ +|||++
T Consensus 234 Gwf~~WG~~~~~~~~~~~~~~l~~~l~~g~~-~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~E~G~~-~~Ky~~ 311 (319)
T PF01301_consen 234 GWFDHWGGPHYTRPAEDVAADLARMLSKGNS-LNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPIDEYGQL-TPKYYE 311 (319)
T ss_dssp S---BTTS--HHHHHHHHHHHHHHHHHHCSE-EEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-TTS-B--HHHHH
T ss_pred ccccccCCCCccCCHHHHHHHHHHHHHhhcc-cceeeccccCCccccccCCCCCCCCcccCCcCCccCcCCCc-CHHHHH
Confidence 9999999999999999999999999999966 799999999999999887654 5999999999999999 599999
Q ss_pred HHHHHHH
Q 003044 333 LKELHRA 339 (854)
Q Consensus 333 lr~l~~~ 339 (854)
||+||++
T Consensus 312 lr~l~~~ 318 (319)
T PF01301_consen 312 LRRLHQK 318 (319)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9999874
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.3e-36 Score=351.87 Aligned_cols=289 Identities=22% Similarity=0.339 Sum_probs=212.8
Q ss_pred EEEecCcEEECCEEeEEEEEEeeCCCCCHhHHHHHHHHHHHCCCCEEEe-ccccCccCCCCCceeecccchHHHHHHHHH
Q 003044 28 VTYDRKALLINGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIET-YVFWNVHEPSPGNYNFEGRYDLVRFIKTIQ 106 (854)
Q Consensus 28 v~~d~~~~~idG~~~~~~sg~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~-yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~ 106 (854)
|.+++..+++||+|++++||.+||+|+|++.|.|||++||++|+|+|++ |+.|+.|||++|+|||+ .+|+. ||++|+
T Consensus 1 ~~~~~~~~~~dg~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~ 78 (673)
T COG1874 1 VSYDGYSFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAY 78 (673)
T ss_pred CcccccceeeCCceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHH
Confidence 3567889999999999999999999999999999999999999999999 99999999999999999 78888 999999
Q ss_pred HcCCEEEEecCc-eeeeecCCCCCCcccccCCCeEee---------cCChhHHHHHHHHHHHHHHHHhhcccccccCCce
Q 003044 107 KAGLYAHLRIGP-YVCAEWNFGGFPVWLKYVPGISFR---------TDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPI 176 (854)
Q Consensus 107 ~~gL~vilrpGP-yi~aEw~~GGlP~WL~~~p~~~~R---------t~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpI 176 (854)
+.||+||||||| ..|.+|..+++|+||..++.-..| .+++.|++++++.+.+|.+++ +++|++|
T Consensus 79 ~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~------~~~~~~v 152 (673)
T COG1874 79 KAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERL------YGNGPAV 152 (673)
T ss_pred hcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHH------hccCCce
Confidence 999999999999 999999999999999876542232 345678888877554444443 4789999
Q ss_pred EEecccccccccccccCcccHHHHHHHHHHHHHc-CCCcceeecCCC-CCCC-ccccCCC-----Cccc--CcCCCCCCC
Q 003044 177 ILSQIENEYGAQSKLLGAAGHNYMTWAAKMAVEM-GTGVPWVMCKEE-DAPD-PVINSCN-----GFYC--DAFTPNQPY 246 (854)
Q Consensus 177 I~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~-g~~vp~~~~~~~-~~~~-~vi~~~n-----g~~~--~~~~~~~p~ 246 (854)
|+||++||||++.+.+..|.+.+..||++.+-.. .+.-+|=+.-.+ +..+ ..|.+.+ +... -+|......
T Consensus 153 ~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e~~~~~~~ld~~~f~~e 232 (673)
T COG1874 153 ITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLNEAWGTSFWSHTYKDFDEIMSPNPFGELPLPGLYLDYRRFESE 232 (673)
T ss_pred eEEEccCccCCccccccccHHHHHHHHHhCcchHHhhhhhhhhhhcccccccHHhhcCCCCccccCCccchhhHhhhhhh
Confidence 9999999999966666678889999999877211 111222111100 0000 0011111 0000 022222223
Q ss_pred C----CeEEeeeCcccc-cccCCCCCcCC-HHHHHHHHHHHHHhCCeeeeeeEeeccCCCC------CCCCCC---c---
Q 003044 247 K----PTIWTEAWSGWF-TEFGGPIHQRP-VQDLAFAAARFIQKGGSFINYYMYHGGTNFG------RSAGGP---F--- 308 (854)
Q Consensus 247 ~----P~~~tE~~~Gwf-~~wG~~~~~~~-~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG------~~~G~~---~--- 308 (854)
+ +....|.+-+|| +.|..++-... .+.-++.+.+.|..+.. -||||||+|++|+ +.+|+. +
T Consensus 233 ~~~~~~~~~~~~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~~sw-dny~~~~~~~~~~~~~h~l~r~~~~~~~~~~m 311 (673)
T COG1874 233 QILEFVREEGEAIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDFASW-DNYPAWHRGRDFTKFIHDLFRNGKQGQPFWLM 311 (673)
T ss_pred hhHHHHHHHHHHHHHhCCCCCCChhHhhhhhhcchHHHHHhcChhhh-hhhhhhccccchhhhhHHHHHhhccCCceeec
Confidence 2 445566777888 76766554443 33345566677777766 6999999999999 776654 2
Q ss_pred ----ccccccCCCCCCCCCCC
Q 003044 309 ----ITTSYDYDAPIDEYGLI 325 (854)
Q Consensus 309 ----~~tSYDY~Api~E~G~~ 325 (854)
..|+|++++.+.+.|..
T Consensus 312 e~~P~~vn~~~~n~~~~~G~~ 332 (673)
T COG1874 312 EQLPSVVNWALYNKLKRPGAL 332 (673)
T ss_pred cCCcchhhhhhccCCCCCccc
Confidence 47999999999999984
No 5
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.81 E-value=2e-19 Score=202.70 Aligned_cols=263 Identities=21% Similarity=0.281 Sum_probs=160.2
Q ss_pred eeCCCCCHhHHHHHHHHHHHCCCCEEEe-ccccCccCCCCCceeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCC
Q 003044 49 IHYPRSTPDMWEDLIQKAKDGGLDVIET-YVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFG 127 (854)
Q Consensus 49 ~Hy~r~~~~~W~~~l~k~ka~G~N~V~~-yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vilrpGPyi~aEw~~G 127 (854)
+++..+|++.|+++|++||++|+|+|++ .+.|...||+||+|||+ .|+++|++|+++||+|||+.. .+
T Consensus 2 y~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~---~lD~~l~~a~~~Gi~viL~~~--------~~ 70 (374)
T PF02449_consen 2 YYPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFS---WLDRVLDLAAKHGIKVILGTP--------TA 70 (374)
T ss_dssp --GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---H---HHHHHHHHHHCTT-EEEEEEC--------TT
T ss_pred CCcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecH---HHHHHHHHHHhccCeEEEEec--------cc
Confidence 4567789999999999999999999996 67899999999999999 799999999999999999964 67
Q ss_pred CCCccccc-CCCeEe----------------ecCChhHHHHHHHHHHHHHHHHhhcccccccCCceEEeccccccccccc
Q 003044 128 GFPVWLKY-VPGISF----------------RTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSK 190 (854)
Q Consensus 128 GlP~WL~~-~p~~~~----------------Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~ 190 (854)
..|.||.+ .|++.. ..++|.|++++++++++|+++++++| .||+|||+||++...+
T Consensus 71 ~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p-------~vi~~~i~NE~~~~~~ 143 (374)
T PF02449_consen 71 APPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHP-------AVIGWQIDNEPGYHRC 143 (374)
T ss_dssp TS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTT-------TEEEEEECCSTTCTS-
T ss_pred ccccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccc-------eEEEEEeccccCcCcC
Confidence 79999975 576532 13468899999999999999988554 8999999999987422
Q ss_pred ccCcccHHHHHHHHHHHHHc-------CC-------------CcceeecCCC----------------------------
Q 003044 191 LLGAAGHNYMTWAAKMAVEM-------GT-------------GVPWVMCKEE---------------------------- 222 (854)
Q Consensus 191 ~~~~~~~~y~~~l~~~~~~~-------g~-------------~vp~~~~~~~---------------------------- 222 (854)
....+.++|.+||++++... |. ..|..+....
T Consensus 144 ~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ir 223 (374)
T PF02449_consen 144 YSPACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADIIR 223 (374)
T ss_dssp -SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22236788999999987421 11 1122221000
Q ss_pred -CCCCccccCCC--C-----cc-------cC-----cC-------C---------------CCCCCCCeEEeeeCccccc
Q 003044 223 -DAPDPVINSCN--G-----FY-------CD-----AF-------T---------------PNQPYKPTIWTEAWSGWFT 260 (854)
Q Consensus 223 -~~~~~vi~~~n--g-----~~-------~~-----~~-------~---------------~~~p~~P~~~tE~~~Gwf~ 260 (854)
..|+- .-+.| + .+ +| .+ . ...+++|.+++|..+| -.
T Consensus 224 ~~~p~~-~vt~n~~~~~~~~~d~~~~a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~kpf~v~E~~~g-~~ 301 (374)
T PF02449_consen 224 EYDPDH-PVTTNFMGSWFNGIDYFKWAKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSLAKGKPFWVMEQQPG-PV 301 (374)
T ss_dssp HHSTT--EEE-EE-TT---SS-HHHHGGGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHHTTT--EEEEEE--S---
T ss_pred HhCCCc-eEEeCccccccCcCCHHHHHhhCCcceeccccCcccCCCCCCHHHHHHHHHHHHhhcCCCceEeecCCCC-CC
Confidence 00110 00101 0 00 00 00 0 1147899999999998 56
Q ss_pred ccCCCCCcCCHHHHHHHHHHHHHhCCeeeeeeEeeccCCCCCCCCCCcccccccCCCCCCCCC-CCCchhHHHHHHHHHH
Q 003044 261 EFGGPIHQRPVQDLAFAAARFIQKGGSFINYYMYHGGTNFGRSAGGPFITTSYDYDAPIDEYG-LIRQPKYGHLKELHRA 339 (854)
Q Consensus 261 ~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~tSYDY~Api~E~G-~~~t~ky~~lr~l~~~ 339 (854)
.|+.......++.+....-.-++.|+..+.|+-+ ..-.+|.-.. ..+.|+-+| .+ +++|.+++++.+.
T Consensus 302 ~~~~~~~~~~pg~~~~~~~~~~A~Ga~~i~~~~w-r~~~~g~E~~---------~~g~~~~dg~~~-~~~~~e~~~~~~~ 370 (374)
T PF02449_consen 302 NWRPYNRPPRPGELRLWSWQAIAHGADGILFWQW-RQSRFGAEQF---------HGGLVDHDGREP-TRRYREVAQLGRE 370 (374)
T ss_dssp SSSSS-----TTHHHHHHHHHHHTT-S-EEEC-S-B--SSSTTTT---------S--SB-TTS--B--HHHHHHHHHHHH
T ss_pred CCccCCCCCCCCHHHHHHHHHHHHhCCeeEeeec-cCCCCCchhh---------hcccCCccCCCC-CcHHHHHHHHHHH
Confidence 6766555555566666666678999998887755 3333332210 136788889 65 7999999999877
Q ss_pred HHh
Q 003044 340 IKM 342 (854)
Q Consensus 340 i~~ 342 (854)
|+.
T Consensus 371 l~~ 373 (374)
T PF02449_consen 371 LKK 373 (374)
T ss_dssp HHT
T ss_pred Hhc
Confidence 653
No 6
>KOG4729 consensus Galactoside-binding lectin [General function prediction only]
Probab=99.80 E-value=6.8e-20 Score=189.68 Aligned_cols=87 Identities=31% Similarity=0.679 Sum_probs=81.6
Q ss_pred CCCceEEecCCCCeEeeEeeeccCCCC-CCCCCC----CCCCccCCChhhhHhhhcCCCCceeEEecCCCccCCCCCCCc
Q 003044 757 HSPKVHLRCSPGHTISSIKFASFGTPL-GTCGSY----QQGPCHSPTSYDILEKKCVGKQRCAVTISNSNFGVDPCPNVL 831 (854)
Q Consensus 757 ~~~~~~L~C~~g~~Is~I~~A~YGR~~-~~C~~~----~~~~C~~~~s~~~V~~~C~Gk~~C~i~a~~~~Fg~DPCpgt~ 831 (854)
+|+.++|+||.|.+| +|++|+|||.+ .+|.+. .+.+|..++++.++.++|++++.|.|.|+.++|++||||||+
T Consensus 42 dG~~i~L~CP~~dvI-sv~sanYGR~~~~iC~pd~~~~~Si~C~~p~s~~i~~~rCnnr~~C~vvv~s~~F~~DPCPgT~ 120 (265)
T KOG4729|consen 42 DGERITLSCPRGDVI-SVQSANYGRFSDKICDPDPGREESINCYLPKSFSILSSRCNNRRQCTVVVDSDVFGDDPCPGTS 120 (265)
T ss_pred cCceEEEEcCCCCEE-EEEecccCcccccccCCccccccchhccChHHHHHHHHhcCCCceEEEEecCCccCCCCCCCch
Confidence 489999999999999 59999999998 799753 368999999999999999999999999999999999999999
Q ss_pred ceEEEEEEeeCCC
Q 003044 832 KRLSVEAICSPTT 844 (854)
Q Consensus 832 KYL~V~Y~C~~~~ 844 (854)
|||+|+|.|+|..
T Consensus 121 KYLev~Y~Cvp~~ 133 (265)
T KOG4729|consen 121 KYLEVQYGCVPYA 133 (265)
T ss_pred hheEEEeccCccc
Confidence 9999999999974
No 7
>PF02140 Gal_Lectin: Galactose binding lectin domain; InterPro: IPR000922 The D-galactoside binding lectin purified from sea urchin (Anthocidaris crassispina) eggs exists as a disulphide-linked homodimer of two subunits; the dimeric form is essential for hemagglutination activity []. The sea urchin egg lectin (SUEL) forms a new class of lectins. Although SUEL was first isolated as a D-galactoside binding lectin, it was latter shown that it bind to L-rhamnose preferentially [, ]. L-rhamnose and D-galactose share the same hydroxyl group orientation at C2 and C4 of the pyranose ring structure. A cysteine-rich domain homologous to the SUEL protein has been identified in the following proteins [, , ]: Plant beta-galactosidases (3.2.1.23 from EC) (lactases). Mammalian latrophilin, the calcium independent receptor of alpha-latrotoxin (CIRL). The galactose-binding lectin domain is not required for alpha-latratoxin binding []. Human lectomedin-1. Rhamnose-binding lectin (SAL) from catfish (Silurus asotus, Namazu) eggs. This protein is composed of three tandem repeat domains homologous to the SUEL lectin domain. All cysteine positions of each domain are completely conserved []. The hypothetical B0457.1, F32A7.3A and F32A7.3B proteins from Caenorhabditis elegans. The human KIAA0821 protein. ; GO: 0005529 sugar binding; PDB: 2JXA_A 2JX9_A 2ZX2_A 2ZX3_B 2ZX0_B 2ZX1_B 2ZX4_B.
Probab=99.79 E-value=4.9e-20 Score=163.06 Aligned_cols=76 Identities=42% Similarity=0.837 Sum_probs=62.4
Q ss_pred EecCCCCeEeeEeeeccCCCC-CCCCCC---CCCCccCCChhhhHhhhcCCCCceeEEecCCCccCCCCCCCcceEEEEE
Q 003044 763 LRCSPGHTISSIKFASFGTPL-GTCGSY---QQGPCHSPTSYDILEKKCVGKQRCAVTISNSNFGVDPCPNVLKRLSVEA 838 (854)
Q Consensus 763 L~C~~g~~Is~I~~A~YGR~~-~~C~~~---~~~~C~~~~s~~~V~~~C~Gk~~C~i~a~~~~Fg~DPCpgt~KYL~V~Y 838 (854)
|+||+|++| .|.+|+|||++ .+|+.. ...+|.+++++.+|+++|+||++|.|.+++.+|| ||||++.|||+|+|
T Consensus 1 L~C~~g~~I-~I~~A~YGR~~~~~C~~~~~~~~~~C~~~~~~~~v~~~C~g~~~C~v~~~~~~f~-dpC~~~~KyL~V~Y 78 (80)
T PF02140_consen 1 LSCPPGKVI-SIDSAFYGRTSSSICPSSSSGSNTNCSAPDALSIVKERCNGKQSCSVPADNSVFG-DPCPGTSKYLEVTY 78 (80)
T ss_dssp EE-STTEEE-EEEEEEEEBSSSSTT--GGGCS-TTB--TTHHHHHHHHHTTBSEEEEESSHHHH---SSTTS--EEEEEE
T ss_pred CCCcCCCEE-EEEEeecCCCCCCCCcCCCcCCCCccccccccchhHHhCCCCCccEEEeccCccC-CCCCCCCeEEEEEE
Confidence 799999988 79999999998 699843 3678999999999999999999999999999998 99999999999999
Q ss_pred Ee
Q 003044 839 IC 840 (854)
Q Consensus 839 ~C 840 (854)
+|
T Consensus 79 ~C 80 (80)
T PF02140_consen 79 TC 80 (80)
T ss_dssp EE
T ss_pred EC
Confidence 99
No 8
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.25 E-value=2.8e-10 Score=124.64 Aligned_cols=192 Identities=19% Similarity=0.268 Sum_probs=124.7
Q ss_pred EEEecCcEEECCEEeEEEEEEeeCCC------CCHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHH
Q 003044 28 VTYDRKALLINGQRRILFSGSIHYPR------STPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRF 101 (854)
Q Consensus 28 v~~d~~~~~idG~~~~~~sg~~Hy~r------~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~f 101 (854)
|.+.++.|+|||||+++-+...|... ++++.|+.+|++||++|+|+|++ .|-|. -.+|
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~-----~h~p~-----------~~~~ 64 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRT-----HHYPP-----------SPRF 64 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEE-----TTS-------------SHHH
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEc-----ccccC-----------cHHH
Confidence 67889999999999999999999633 58999999999999999999999 56654 3688
Q ss_pred HHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCeEeecCChhHHHHHHHHHHHHHHHHhhcccccccCCceEEecc
Q 003044 102 IKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQI 181 (854)
Q Consensus 102 l~la~~~gL~vilrpGPyi~aEw~~GGlP~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi 181 (854)
+++|.++||.|+..+.=.-++.|..-|. ......||.+.+.+.+-+++++.+.+.|| .||+|=+
T Consensus 65 ~~~cD~~GilV~~e~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~NHP-------SIi~W~~ 128 (298)
T PF02836_consen 65 YDLCDELGILVWQEIPLEGHGSWQDFGN---------CNYDADDPEFRENAEQELREMVRRDRNHP-------SIIMWSL 128 (298)
T ss_dssp HHHHHHHT-EEEEE-S-BSCTSSSSTSC---------TSCTTTSGGHHHHHHHHHHHHHHHHTT-T-------TEEEEEE
T ss_pred HHHHhhcCCEEEEeccccccCccccCCc---------cccCCCCHHHHHHHHHHHHHHHHcCcCcC-------chheeec
Confidence 9999999999997752101112221110 12456789999998888888888888766 8999999
Q ss_pred cccccccccccCcccHHHHHHHHHHHHHcCCCcceeecCCC--CCCCccc-cCCCCccc-----CcCC----C--CCCCC
Q 003044 182 ENEYGAQSKLLGAAGHNYMTWAAKMAVEMGTGVPWVMCKEE--DAPDPVI-NSCNGFYC-----DAFT----P--NQPYK 247 (854)
Q Consensus 182 ENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~--~~~~~vi-~~~ng~~~-----~~~~----~--~~p~~ 247 (854)
-||-. ...+++.|.+++++..-+-|+....+. ...+... +...+.+. +.+. . ..+++
T Consensus 129 gNE~~---------~~~~~~~l~~~~k~~DptRpv~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~k 199 (298)
T PF02836_consen 129 GNESD---------YREFLKELYDLVKKLDPTRPVTYASNGWDPYVDDIIFDIYSGWYNGYGDPEDFEKYLEDWYKYPDK 199 (298)
T ss_dssp EESSH---------HHHHHHHHHHHHHHH-TTSEEEEETGTSGGSTSSCEECSETTTSSSCCHHHHHHHHHHHHHHHCTS
T ss_pred CccCc---------cccchhHHHHHHHhcCCCCceeecccccccccccccccccccccCCcccHHHHHHHHHhccccCCC
Confidence 99982 346788899999988777776543331 0111111 10001110 1111 1 35889
Q ss_pred CeEEeeeCccccc
Q 003044 248 PTIWTEAWSGWFT 260 (854)
Q Consensus 248 P~~~tE~~~Gwf~ 260 (854)
|++.+||....+.
T Consensus 200 P~i~sEyg~~~~~ 212 (298)
T PF02836_consen 200 PIIISEYGADAYN 212 (298)
T ss_dssp -EEEEEESEBBSS
T ss_pred CeEehhccccccc
Confidence 9999999765554
No 9
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.07 E-value=2.1e-08 Score=120.27 Aligned_cols=159 Identities=15% Similarity=0.085 Sum_probs=113.3
Q ss_pred eeEEEecCcEEECCEEeEEEEEEeeCCC------CCHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHH
Q 003044 26 CSVTYDRKALLINGQRRILFSGSIHYPR------STPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLV 99 (854)
Q Consensus 26 ~~v~~d~~~~~idG~~~~~~sg~~Hy~r------~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~ 99 (854)
++|++++..|+|||+|+++-+...|... ++++.|+.+|+.||++|+|+|++ .|-|. =.
T Consensus 276 R~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~-----sh~p~-----------~~ 339 (604)
T PRK10150 276 RSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRT-----SHYPY-----------SE 339 (604)
T ss_pred EEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEe-----ccCCC-----------CH
Confidence 5688999999999999999999888532 57889999999999999999999 35553 25
Q ss_pred HHHHHHHHcCCEEEEecCceeeeecCCCCCCcccc-------c-CCCeEeecCChhHHHHHHHHHHHHHHHHhhcccccc
Q 003044 100 RFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLK-------Y-VPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFES 171 (854)
Q Consensus 100 ~fl~la~~~gL~vilrpGPyi~aEw~~GGlP~WL~-------~-~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~ 171 (854)
+|+++|.++||+|+.... .-|+..|+. + .+....-..+|.+.++..+-+++++.+.++|
T Consensus 340 ~~~~~cD~~GllV~~E~p--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NH----- 406 (604)
T PRK10150 340 EMLDLADRHGIVVIDETP--------AVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIRELIARDKNH----- 406 (604)
T ss_pred HHHHHHHhcCcEEEEecc--------cccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhccCC-----
Confidence 799999999999997742 111222221 1 1111112345677776666666666666655
Q ss_pred cCCceEEecccccccccccccCcccHHHHHHHHHHHHHcCCCcceeec
Q 003044 172 QGGPIILSQIENEYGAQSKLLGAAGHNYMTWAAKMAVEMGTGVPWVMC 219 (854)
Q Consensus 172 ~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~ 219 (854)
..||||-|-||.... ......+++.|.+.+++..-+-|+..+
T Consensus 407 --PSIi~Ws~gNE~~~~----~~~~~~~~~~l~~~~k~~DptR~vt~~ 448 (604)
T PRK10150 407 --PSVVMWSIANEPASR----EQGAREYFAPLAELTRKLDPTRPVTCV 448 (604)
T ss_pred --ceEEEEeeccCCCcc----chhHHHHHHHHHHHHHhhCCCCceEEE
Confidence 489999999997542 113457788888888888777665543
No 10
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=98.85 E-value=7e-08 Score=121.66 Aligned_cols=259 Identities=19% Similarity=0.165 Sum_probs=150.6
Q ss_pred eeEEEecCcEEECCEEeEEEEEEeeCCC------CCHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHH
Q 003044 26 CSVTYDRKALLINGQRRILFSGSIHYPR------STPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLV 99 (854)
Q Consensus 26 ~~v~~d~~~~~idG~~~~~~sg~~Hy~r------~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~ 99 (854)
++|+++++.|+|||+|+++-+...|... ++++.|+.+|+.||++|+|+|++ .|-|. -.
T Consensus 318 R~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~-----sHyP~-----------~~ 381 (1021)
T PRK10340 318 RDIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRT-----AHYPN-----------DP 381 (1021)
T ss_pred EEEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCC-----------CH
Confidence 5678889999999999999999988422 47899999999999999999998 35443 35
Q ss_pred HHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCeEeecCChhHHHHHHHHHHHHHHHHhhcccccccCCceEEe
Q 003044 100 RFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILS 179 (854)
Q Consensus 100 ~fl~la~~~gL~vilrpGPyi~aEw~~GGlP~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~ 179 (854)
+|+++|.|+||+|+-.. |..|. |++ .. .+...-+++|.|.++..+=+++++.+.++ ...||||
T Consensus 382 ~fydlcDe~GllV~dE~-~~e~~-----g~~--~~--~~~~~~~~~p~~~~~~~~~~~~mV~RdrN-------HPSIi~W 444 (1021)
T PRK10340 382 RFYELCDIYGLFVMAET-DVESH-----GFA--NV--GDISRITDDPQWEKVYVDRIVRHIHAQKN-------HPSIIIW 444 (1021)
T ss_pred HHHHHHHHCCCEEEECC-ccccc-----Ccc--cc--cccccccCCHHHHHHHHHHHHHHHHhCCC-------CCEEEEE
Confidence 89999999999999875 22221 221 00 01111246677765544445555555554 4599999
Q ss_pred cccccccccccccCcccHHHHHHHHHHHHHcCCCcceeecCCCCC--CCccccCCCCcc--cCcCCCCCCCCCeEEeeeC
Q 003044 180 QIENEYGAQSKLLGAAGHNYMTWAAKMAVEMGTGVPWVMCKEEDA--PDPVINSCNGFY--CDAFTPNQPYKPTIWTEAW 255 (854)
Q Consensus 180 QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~--~~~vi~~~ng~~--~~~~~~~~p~~P~~~tE~~ 255 (854)
=+-||-+. | . .++.+.+.+++..-.-|+ +..+... ..+++...-+.. ...+....+++|++.+|+-
T Consensus 445 slGNE~~~-----g---~-~~~~~~~~~k~~DptR~v-~~~~~~~~~~~Dv~~~~Y~~~~~~~~~~~~~~~kP~i~~Ey~ 514 (1021)
T PRK10340 445 SLGNESGY-----G---C-NIRAMYHAAKALDDTRLV-HYEEDRDAEVVDVISTMYTRVELMNEFGEYPHPKPRILCEYA 514 (1021)
T ss_pred ECccCccc-----c---H-HHHHHHHHHHHhCCCceE-EeCCCcCccccceeccccCCHHHHHHHHhCCCCCcEEEEchH
Confidence 99999753 2 1 235677777777766654 3332111 112222111111 1122233467999999984
Q ss_pred cccccccCCCCCcCCHHHHHHHHHHH-----------HHhC-----CeeeeeeEeeccCCCCCCCCCCcccccccCCCCC
Q 003044 256 SGWFTEFGGPIHQRPVQDLAFAAARF-----------IQKG-----GSFINYYMYHGGTNFGRSAGGPFITTSYDYDAPI 319 (854)
Q Consensus 256 ~Gwf~~wG~~~~~~~~~~~~~~~~~~-----------l~~g-----~s~~n~YM~hGGTNfG~~~G~~~~~tSYDY~Api 319 (854)
-+ .|.. ....++.-..+.+. +..| ..- .-|+.+||- ||-+. -..++--+.-+
T Consensus 515 ha----mgn~--~g~~~~yw~~~~~~p~l~GgfiW~~~D~~~~~~~~~G-~~~~~ygGd-~g~~p----~~~~f~~~Glv 582 (1021)
T PRK10340 515 HA----MGNG--PGGLTEYQNVFYKHDCIQGHYVWEWCDHGIQAQDDNG-NVWYKYGGD-YGDYP----NNYNFCIDGLI 582 (1021)
T ss_pred hc----cCCC--CCCHHHHHHHHHhCCceeEEeeeecCcccccccCCCC-CEEEEECCC-CCCCC----CCcCcccceeE
Confidence 21 2210 00122222222110 0100 000 124455653 54321 01222234678
Q ss_pred CCCCCCCchhHHHHHHHHHHH
Q 003044 320 DEYGLIRQPKYGHLKELHRAI 340 (854)
Q Consensus 320 ~E~G~~~t~ky~~lr~l~~~i 340 (854)
+-+|.+ .|.|.+.|.+.+-+
T Consensus 583 ~~dr~p-~p~~~e~k~~~~pv 602 (1021)
T PRK10340 583 YPDQTP-GPGLKEYKQVIAPV 602 (1021)
T ss_pred CCCCCC-ChhHHHHHHhcceE
Confidence 889998 69999999886543
No 11
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.82 E-value=8.6e-09 Score=97.12 Aligned_cols=69 Identities=30% Similarity=0.696 Sum_probs=49.5
Q ss_pred CCCceEEEEEEECCCCCCCeE-EeeC--CCccEEEEECCeeeeeeecccccCCCCCccccCCcCCCcccCCCCCCceeEE
Q 003044 618 QQPLMWHKAYFNAPEGDEPLA-LDME--GMGKGQIWINGQSVGRYWTAYAKGDCNGCNYVGGYRPTKCQLGCGQPTQRWY 694 (854)
Q Consensus 618 ~~~~~wyk~~F~~p~~~dpt~-Ld~~--g~gKG~vwVNG~nLGRYW~~~~~g~~~~~~~~G~~~~~~~~~~~~~PQqtlY 694 (854)
..+..|||++|+.......+. |+.. ...+.+|||||++|||||+. +| ||++++
T Consensus 33 ~~g~~~Yrg~F~~~~~~~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~-----------~g-------------~q~tf~ 88 (111)
T PF13364_consen 33 HAGYLWYRGTFTGTGQDTSLTPLNIQGGNAFRASVWVNGWFLGSYWPG-----------IG-------------PQTTFS 88 (111)
T ss_dssp SSCEEEEEEEEETTTEEEEEE-EEECSSTTEEEEEEETTEEEEEEETT-----------TE-------------CCEEEE
T ss_pred CCCCEEEEEEEeCCCcceeEEEEeccCCCceEEEEEECCEEeeeecCC-----------CC-------------ccEEEE
Confidence 346899999996422111233 3433 56789999999999999954 35 999998
Q ss_pred ecCcccccCCcceEEEE
Q 003044 695 HVPRSWLKPTQNFLVVF 711 (854)
Q Consensus 695 hVP~~~Lk~g~N~lvif 711 (854)
||..+|+.++|.|+|+
T Consensus 89 -~p~~il~~~n~v~~vl 104 (111)
T PF13364_consen 89 -VPAGILKYGNNVLVVL 104 (111)
T ss_dssp -E-BTTBTTCEEEEEEE
T ss_pred -eCceeecCCCEEEEEE
Confidence 9999999875555554
No 12
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=98.80 E-value=1.3e-07 Score=119.18 Aligned_cols=149 Identities=17% Similarity=0.166 Sum_probs=105.9
Q ss_pred eeEEEecCcEEECCEEeEEEEEEeeCC------CCCHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHH
Q 003044 26 CSVTYDRKALLINGQRRILFSGSIHYP------RSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLV 99 (854)
Q Consensus 26 ~~v~~d~~~~~idG~~~~~~sg~~Hy~------r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~ 99 (854)
++|+++++.|+|||+|+++-+...|.. +++++.++++|+.||++|+|+|++ .|-|. -.
T Consensus 334 R~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~-----sHyP~-----------~p 397 (1027)
T PRK09525 334 RKVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRC-----SHYPN-----------HP 397 (1027)
T ss_pred EEEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCC-----------CH
Confidence 567888899999999999999999842 368999999999999999999999 35443 36
Q ss_pred HHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCeEeecCChhHHHHHHHHHHHHHHHHhhcccccccCCceEEe
Q 003044 100 RFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILS 179 (854)
Q Consensus 100 ~fl~la~~~gL~vilrpGPyi~aEw~~GGlP~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~ 179 (854)
+|+++|.|+||+|+-... . | ..|-.|.. .-.+||.|.+++..=+++++.+.++ ...||||
T Consensus 398 ~fydlcDe~GilV~dE~~-~---e-~hg~~~~~--------~~~~dp~~~~~~~~~~~~mV~RdrN-------HPSIi~W 457 (1027)
T PRK09525 398 LWYELCDRYGLYVVDEAN-I---E-THGMVPMN--------RLSDDPRWLPAMSERVTRMVQRDRN-------HPSIIIW 457 (1027)
T ss_pred HHHHHHHHcCCEEEEecC-c---c-ccCCcccc--------CCCCCHHHHHHHHHHHHHHHHhCCC-------CCEEEEE
Confidence 789999999999998752 1 1 11111210 0135677877665555555555554 4599999
Q ss_pred cccccccccccccCcccHHHHHHHHHHHHHcCCCcceeec
Q 003044 180 QIENEYGAQSKLLGAAGHNYMTWAAKMAVEMGTGVPWVMC 219 (854)
Q Consensus 180 QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~ 219 (854)
=+-||-+. + ...+.+.+.+++..-.-|....
T Consensus 458 SlgNE~~~-----g----~~~~~l~~~~k~~DptRpV~y~ 488 (1027)
T PRK09525 458 SLGNESGH-----G----ANHDALYRWIKSNDPSRPVQYE 488 (1027)
T ss_pred eCccCCCc-----C----hhHHHHHHHHHhhCCCCcEEEC
Confidence 99999753 2 1235566667776666665543
No 13
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.75 E-value=1.2e-07 Score=101.65 Aligned_cols=159 Identities=19% Similarity=0.254 Sum_probs=108.4
Q ss_pred CCEEeEEEEEEeeCCCCCHhHHHHHHHHHHHCCCCEEEeccccCccC-CCCCc-eeecccchHHHHHHHHHHcCCEEEEe
Q 003044 38 NGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHE-PSPGN-YNFEGRYDLVRFIKTIQKAGLYAHLR 115 (854)
Q Consensus 38 dG~~~~~~sg~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hE-p~~G~-ydf~g~~dl~~fl~la~~~gL~vilr 115 (854)
+|+++.+.+-+.|+.. +..-++.+++||++|+|+||+.|.|...+ +.++. ++=+.-..|+++|+.|+++||+|||.
T Consensus 4 ~G~~v~~~G~n~~w~~--~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild 81 (281)
T PF00150_consen 4 NGKPVNWRGFNTHWYN--PSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILD 81 (281)
T ss_dssp TSEBEEEEEEEETTSG--GGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCeEEeeeeecccCC--CCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 7999999999999322 12678899999999999999999995554 67664 66666679999999999999999987
Q ss_pred cCceeeeecCCCCCCcccccCCCeEeecCChhHHHHHHHHHHHHHHHHhhcccccccCCceEEecccccccccccc--cC
Q 003044 116 IGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKL--LG 193 (854)
Q Consensus 116 pGPyi~aEw~~GGlP~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~--~~ 193 (854)
+- + .|.|....... ...+...+...++.+.|++++++ ..+|++++|=||....... ..
T Consensus 82 ~h----~------~~~w~~~~~~~---~~~~~~~~~~~~~~~~la~~y~~-------~~~v~~~el~NEP~~~~~~~~w~ 141 (281)
T PF00150_consen 82 LH----N------APGWANGGDGY---GNNDTAQAWFKSFWRALAKRYKD-------NPPVVGWELWNEPNGGNDDANWN 141 (281)
T ss_dssp EE----E------STTCSSSTSTT---TTHHHHHHHHHHHHHHHHHHHTT-------TTTTEEEESSSSGCSTTSTTTTS
T ss_pred ec----c------Ccccccccccc---ccchhhHHHHHhhhhhhccccCC-------CCcEEEEEecCCccccCCccccc
Confidence 42 1 27774332111 11222334444556666666653 3479999999999864211 00
Q ss_pred ----cccHHHHHHHHHHHHHcCCCcceee
Q 003044 194 ----AAGHNYMTWAAKMAVEMGTGVPWVM 218 (854)
Q Consensus 194 ----~~~~~y~~~l~~~~~~~g~~vp~~~ 218 (854)
..-.++++.+.+.+|+.+.+.+++.
T Consensus 142 ~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~ 170 (281)
T PF00150_consen 142 AQNPADWQDWYQRAIDAIRAADPNHLIIV 170 (281)
T ss_dssp HHHTHHHHHHHHHHHHHHHHTTSSSEEEE
T ss_pred cccchhhhhHHHHHHHHHHhcCCcceeec
Confidence 1124556667777788888776654
No 14
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=98.64 E-value=3.5e-07 Score=111.66 Aligned_cols=120 Identities=21% Similarity=0.276 Sum_probs=98.7
Q ss_pred eeEEEecCcEEECCEEeEEEEEEeeCCC-----C-CHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHH
Q 003044 26 CSVTYDRKALLINGQRRILFSGSIHYPR-----S-TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLV 99 (854)
Q Consensus 26 ~~v~~d~~~~~idG~~~~~~sg~~Hy~r-----~-~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~ 99 (854)
++|++++..|.|||||+++-+...|.+- . ..+.-+++|++||++|+|+|+|- |-|. =.
T Consensus 284 R~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~-----------~~ 347 (808)
T COG3250 284 RTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRTS-----HYPN-----------SE 347 (808)
T ss_pred EEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEec-----CCCC-----------CH
Confidence 6789999999999999999999999744 3 45558999999999999999993 6665 57
Q ss_pred HHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCeEeecCChhHHHHHHHHHHHHHHHHhhcccccccCCceEEe
Q 003044 100 RFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILS 179 (854)
Q Consensus 100 ~fl~la~~~gL~vilrpGPyi~aEw~~GGlP~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~ 179 (854)
+|++||.++||+||-.+ ..||.. +| +|+.|++.+..=+++|+.+.+.|| .||||
T Consensus 348 ~~ydLcDelGllV~~Ea----~~~~~~--~~-------------~~~~~~k~~~~~i~~mver~knHP-------SIiiW 401 (808)
T COG3250 348 EFYDLCDELGLLVIDEA----MIETHG--MP-------------DDPEWRKEVSEEVRRMVERDRNHP-------SIIIW 401 (808)
T ss_pred HHHHHHHHhCcEEEEec----chhhcC--CC-------------CCcchhHHHHHHHHHHHHhccCCC-------cEEEE
Confidence 89999999999999884 223322 22 788899888877778777777665 89999
Q ss_pred cccccccc
Q 003044 180 QIENEYGA 187 (854)
Q Consensus 180 QiENEyg~ 187 (854)
=+.||-|.
T Consensus 402 s~gNE~~~ 409 (808)
T COG3250 402 SLGNESGH 409 (808)
T ss_pred eccccccC
Confidence 99999874
No 15
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.38 E-value=1.5e-06 Score=82.00 Aligned_cols=84 Identities=18% Similarity=0.261 Sum_probs=58.3
Q ss_pred hhcccCCCCCccEEEEEEEecCCCCcccccCCCCce-EEe-CCcceEEEEEECCEEEEEEEcccccceeEEEeeee-ccC
Q 003044 459 LEQINVTRDASDYLWYITSVDIGSSESFLHGGELPT-LIV-QSTGHALHIFINGQLSGSAFGTREARRFMYTGKVN-LRA 535 (854)
Q Consensus 459 ~Eql~~t~d~~GYl~Y~t~i~~~~~~~~~~~g~~~~-L~i-~~~~D~~~VfVng~~~G~~~~~~~~~~~~~~~~i~-l~~ 535 (854)
.+..+..++..|++|||++|+....+. ... |.+ .+.+++++|||||+++|+..... ..+.+|++|.. |+.
T Consensus 24 ~l~~~~~g~~~g~~~Yrg~F~~~~~~~------~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~-g~q~tf~~p~~il~~ 96 (111)
T PF13364_consen 24 VLYASDYGFHAGYLWYRGTFTGTGQDT------SLTPLNIQGGNAFRASVWVNGWFLGSYWPGI-GPQTTFSVPAGILKY 96 (111)
T ss_dssp STCCGCGTSSSCEEEEEEEEETTTEEE------EEE-EEECSSTTEEEEEEETTEEEEEEETTT-ECCEEEEE-BTTBTT
T ss_pred eeccCccccCCCCEEEEEEEeCCCcce------eEEEEeccCCCceEEEEEECCEEeeeecCCC-CccEEEEeCceeecC
Confidence 456666677999999999997533221 123 444 36899999999999999987322 23355666653 555
Q ss_pred CCCEEEEEEeccCC
Q 003044 536 GRNKIALLSVAVGL 549 (854)
Q Consensus 536 g~n~L~ILven~Gr 549 (854)
+.|+|.+|+.+||+
T Consensus 97 ~n~v~~vl~~~~g~ 110 (111)
T PF13364_consen 97 GNNVLVVLWDNMGH 110 (111)
T ss_dssp CEEEEEEEEE-STT
T ss_pred CCEEEEEEEeCCCC
Confidence 67788999999995
No 16
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=98.04 E-value=1.9e-05 Score=78.90 Aligned_cols=99 Identities=24% Similarity=0.309 Sum_probs=70.3
Q ss_pred CCCccEEEEEEEecCCCCcccccCCCCceEEeCCcceEEEEEECCEEEEEEEcccccceeEEEeeeeccCCC-CEEEEEE
Q 003044 466 RDASDYLWYITSVDIGSSESFLHGGELPTLIVQSTGHALHIFINGQLSGSAFGTREARRFMYTGKVNLRAGR-NKIALLS 544 (854)
Q Consensus 466 ~d~~GYl~Y~t~i~~~~~~~~~~~g~~~~L~i~~~~D~~~VfVng~~~G~~~~~~~~~~~~~~~~i~l~~g~-n~L~ILv 544 (854)
....|+.|||++|+++... .+....|.+.++.+.+.|||||+++|...+.. ..+.++++-.|+.|. |+|.|.|
T Consensus 64 ~~~~~~~wYr~~f~lp~~~----~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~--~~~~~dIt~~l~~g~~N~l~V~v 137 (167)
T PF02837_consen 64 WDYSGYAWYRRTFTLPADW----KGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGY--TPFEFDITDYLKPGEENTLAVRV 137 (167)
T ss_dssp STCCSEEEEEEEEEESGGG----TTSEEEEEESEEESEEEEEETTEEEEEEESTT--S-EEEECGGGSSSEEEEEEEEEE
T ss_pred cccCceEEEEEEEEeCchh----cCceEEEEeccceEeeEEEeCCeEEeeeCCCc--CCeEEeChhhccCCCCEEEEEEE
Confidence 4478999999999886432 24556899999999999999999999987532 345556555678887 9999999
Q ss_pred eccCCccccCCCC-cccccccccEEEe
Q 003044 545 VAVGLPNVGGHYE-TWNTGILGPVALH 570 (854)
Q Consensus 545 en~GrvN~G~~~~-~~~KGI~g~V~l~ 570 (854)
.+...-.+-+.+. ....||.++|.|-
T Consensus 138 ~~~~~~~~~~~~~~~~~~GI~r~V~L~ 164 (167)
T PF02837_consen 138 DNWPDGSTIPGFDYFNYAGIWRPVWLE 164 (167)
T ss_dssp ESSSGGGCGBSSSEEE--EEESEEEEE
T ss_pred eecCCCceeecCcCCccCccccEEEEE
Confidence 8655433211111 3578999988873
No 17
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=97.93 E-value=0.00016 Score=79.12 Aligned_cols=155 Identities=12% Similarity=0.131 Sum_probs=86.5
Q ss_pred cceeEEEecCcEE--ECCEEeEEEEEEeeCCC-----------CCHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCce
Q 003044 24 IHCSVTYDRKALL--INGQRRILFSGSIHYPR-----------STPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNY 90 (854)
Q Consensus 24 ~~~~v~~d~~~~~--idG~~~~~~sg~~Hy~r-----------~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~y 90 (854)
+-..|++.++.|+ .+|++|+|.+-.+.+.- ..++.|+.++..||++|+|||++|-
T Consensus 7 ~~~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~------------ 74 (314)
T PF03198_consen 7 AVPPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYS------------ 74 (314)
T ss_dssp TS--EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES-------------
T ss_pred cCCCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEE------------
Confidence 3467899999999 79999999988776522 2578899999999999999999973
Q ss_pred eecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCeEeecCCh--hHHHHHHHHHHHHHHHHhhccc
Q 003044 91 NFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNE--PFKRAMQGFTEKIVNLMKSENL 168 (854)
Q Consensus 91 df~g~~dl~~fl~la~~~gL~vilrpGPyi~aEw~~GGlP~WL~~~p~~~~Rt~d~--~y~~~~~~~~~~l~~~l~~~~~ 168 (854)
-.-..|=++++++.++.|+|||+..+. |...+-..+| .|-...-.-+.+++..++.++
T Consensus 75 -vdp~~nHd~CM~~~~~aGIYvi~Dl~~------------------p~~sI~r~~P~~sw~~~l~~~~~~vid~fa~Y~- 134 (314)
T PF03198_consen 75 -VDPSKNHDECMSAFADAGIYVILDLNT------------------PNGSINRSDPAPSWNTDLLDRYFAVIDAFAKYD- 134 (314)
T ss_dssp ---TTS--HHHHHHHHHTT-EEEEES-B------------------TTBS--TTS------HHHHHHHHHHHHHHTT-T-
T ss_pred -eCCCCCHHHHHHHHHhCCCEEEEecCC------------------CCccccCCCCcCCCCHHHHHHHHHHHHHhccCC-
Confidence 223357899999999999999999642 2333444445 443333333345567777555
Q ss_pred ccccCCceEEeccccccccccccc--CcccHHHHHHHHHHHHHcCC-Ccce
Q 003044 169 FESQGGPIILSQIENEYGAQSKLL--GAAGHNYMTWAAKMAVEMGT-GVPW 216 (854)
Q Consensus 169 ~~~~gGpII~~QiENEyg~~~~~~--~~~~~~y~~~l~~~~~~~g~-~vp~ 216 (854)
+++++=+-||--.....- .+.-|+..+-+|+-+++.+. .+|+
T Consensus 135 ------N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~IPV 179 (314)
T PF03198_consen 135 ------NTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRSIPV 179 (314)
T ss_dssp ------TEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----E
T ss_pred ------ceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 899999999986432110 01234444555555555555 4454
No 18
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.92 E-value=3.5e-05 Score=82.93 Aligned_cols=116 Identities=22% Similarity=0.374 Sum_probs=86.9
Q ss_pred cCccCCCCCceeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCeEeecCChhHHHHHHHHHHHH
Q 003044 80 WNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKI 159 (854)
Q Consensus 80 Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vilrpGPyi~aEw~~GGlP~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l 159 (854)
|...||++|+|||+ .++++++.|+++||.| |..+-+ |.. ..|.|+...+ .+..++++++|++++
T Consensus 3 W~~~ep~~G~~n~~---~~D~~~~~a~~~gi~v--~gH~l~---W~~-~~P~W~~~~~-------~~~~~~~~~~~i~~v 66 (254)
T smart00633 3 WDSTEPSRGQFNFS---GADAIVNFAKENGIKV--RGHTLV---WHS-QTPDWVFNLS-------KETLLARLENHIKTV 66 (254)
T ss_pred cccccCCCCccChH---HHHHHHHHHHHCCCEE--EEEEEe---ecc-cCCHhhhcCC-------HHHHHHHHHHHHHHH
Confidence 88999999999999 8999999999999998 433332 433 6899997533 245678888888888
Q ss_pred HHHHhhcccccccCCceEEeccccccccccc------cc-CcccHHHHHHHHHHHHHcCCCcceeecC
Q 003044 160 VNLMKSENLFESQGGPIILSQIENEYGAQSK------LL-GAAGHNYMTWAAKMAVEMGTGVPWVMCK 220 (854)
Q Consensus 160 ~~~l~~~~~~~~~gGpII~~QiENEyg~~~~------~~-~~~~~~y~~~l~~~~~~~g~~vp~~~~~ 220 (854)
+.+++ |.|..|+|=||.-.... .+ ...+.+|+...-+.+++..-++.++.++
T Consensus 67 ~~ry~---------g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Nd 125 (254)
T smart00633 67 VGRYK---------GKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYND 125 (254)
T ss_pred HHHhC---------CcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEec
Confidence 88776 46889999999543210 11 1134578888888888888888888765
No 19
>PLN02705 beta-amylase
Probab=97.81 E-value=6.4e-05 Score=87.25 Aligned_cols=80 Identities=18% Similarity=0.314 Sum_probs=64.1
Q ss_pred CHhHHHHHHHHHHHCCCCEEEeccccCccCC-CCCceeecccchHHHHHHHHHHcCCEE--EEecCceeeeecCCC----
Q 003044 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEP-SPGNYNFEGRYDLVRFIKTIQKAGLYA--HLRIGPYVCAEWNFG---- 127 (854)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~ydf~g~~dl~~fl~la~~~gL~v--ilrpGPyi~aEw~~G---- 127 (854)
.++..+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..++++|+++.||++ ||.+ .-|+- +-|
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSF--HqCGG-NVGD~~~ 339 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAF--HEYGG-NASGNVM 339 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--eccCC-CCCCccc
Confidence 4677889999999999999999999999998 599999996 777899999999995 4553 22433 112
Q ss_pred -CCCccccc----CCCeE
Q 003044 128 -GFPVWLKY----VPGIS 140 (854)
Q Consensus 128 -GlP~WL~~----~p~~~ 140 (854)
-||.|+.+ +|+|.
T Consensus 340 IPLP~WV~e~g~~nPDif 357 (681)
T PLN02705 340 ISLPQWVLEIGKDNQDIF 357 (681)
T ss_pred ccCCHHHHHhcccCCCce
Confidence 38999985 47764
No 20
>PLN02905 beta-amylase
Probab=97.76 E-value=9.1e-05 Score=86.28 Aligned_cols=81 Identities=25% Similarity=0.523 Sum_probs=63.9
Q ss_pred CHhHHHHHHHHHHHCCCCEEEeccccCccCC-CCCceeecccchHHHHHHHHHHcCCEE--EEecCceeeeecCCC----
Q 003044 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEP-SPGNYNFEGRYDLVRFIKTIQKAGLYA--HLRIGPYVCAEWNFG---- 127 (854)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~ydf~g~~dl~~fl~la~~~gL~v--ilrpGPyi~aEw~~G---- 127 (854)
.++..+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..++++|+++.||++ ||.+ .-|+- +-|
T Consensus 284 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSF--HqCGG-NVGD~~~ 357 (702)
T PLN02905 284 DPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSF--HECGG-NVGDDVC 357 (702)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 4556788999999999999999999999998 699999996 777899999999995 4553 22333 112
Q ss_pred -CCCccccc----CCCeEe
Q 003044 128 -GFPVWLKY----VPGISF 141 (854)
Q Consensus 128 -GlP~WL~~----~p~~~~ 141 (854)
-||.|+.+ +|+|.+
T Consensus 358 IPLP~WV~e~g~~nPDiff 376 (702)
T PLN02905 358 IPLPHWVAEIGRSNPDIFF 376 (702)
T ss_pred ccCCHHHHHhhhcCCCceE
Confidence 38999975 577643
No 21
>PLN02801 beta-amylase
Probab=97.73 E-value=0.00011 Score=84.19 Aligned_cols=80 Identities=24% Similarity=0.535 Sum_probs=63.9
Q ss_pred CHhHHHHHHHHHHHCCCCEEEeccccCccCC-CCCceeecccchHHHHHHHHHHcCCEE--EEecCceeeeecCCC----
Q 003044 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEP-SPGNYNFEGRYDLVRFIKTIQKAGLYA--HLRIGPYVCAEWNFG---- 127 (854)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~ydf~g~~dl~~fl~la~~~gL~v--ilrpGPyi~aEw~~G---- 127 (854)
.++.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..++.++++++||++ ||.+ .-|+- +-|
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~ 108 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSF--HQCGG-NVGDAVN 108 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 5677889999999999999999999999998 599999996 777899999999996 4553 22332 111
Q ss_pred -CCCccccc----CCCeE
Q 003044 128 -GFPVWLKY----VPGIS 140 (854)
Q Consensus 128 -GlP~WL~~----~p~~~ 140 (854)
-||.|+.+ +|++.
T Consensus 109 IpLP~WV~~~g~~~pDi~ 126 (517)
T PLN02801 109 IPIPQWVRDVGDSDPDIF 126 (517)
T ss_pred ccCCHHHHHhhccCCCce
Confidence 38999985 57763
No 22
>PLN00197 beta-amylase; Provisional
Probab=97.68 E-value=0.00014 Score=83.93 Aligned_cols=81 Identities=26% Similarity=0.562 Sum_probs=64.6
Q ss_pred CHhHHHHHHHHHHHCCCCEEEeccccCccCC-CCCceeecccchHHHHHHHHHHcCCEE--EEecCceeeeecCCC----
Q 003044 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEP-SPGNYNFEGRYDLVRFIKTIQKAGLYA--HLRIGPYVCAEWNFG---- 127 (854)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~ydf~g~~dl~~fl~la~~~gL~v--ilrpGPyi~aEw~~G---- 127 (854)
.++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..++++++++.||++ ||.+ .-|+- +-|
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSF--HqCGG-NVGD~~~ 198 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSF--HQCGG-NVGDSCT 198 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 5667889999999999999999999999998 699999996 777899999999996 4553 22333 112
Q ss_pred -CCCccccc----CCCeEe
Q 003044 128 -GFPVWLKY----VPGISF 141 (854)
Q Consensus 128 -GlP~WL~~----~p~~~~ 141 (854)
-||.|+.+ +|++.+
T Consensus 199 IpLP~WV~~~g~~dpDiff 217 (573)
T PLN00197 199 IPLPKWVVEEVDKDPDLAY 217 (573)
T ss_pred ccCCHHHHHhhccCCCcee
Confidence 38999975 577643
No 23
>TIGR03356 BGL beta-galactosidase.
Probab=97.62 E-value=6.6e-05 Score=86.75 Aligned_cols=97 Identities=16% Similarity=0.202 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHCCCCEEEeccccCccCCC-CCceeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccccc
Q 003044 57 DMWEDLIQKAKDGGLDVIETYVFWNVHEPS-PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKY 135 (854)
Q Consensus 57 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~ydf~g~~dl~~fl~la~~~gL~vilrpGPyi~aEw~~GGlP~WL~~ 135 (854)
..|+++|+.||++|+|++++-|.|...+|. +|++|.+|-...+++|+.|.++||.+|+--= .=.+|.||.+
T Consensus 54 ~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~--------Hfd~P~~l~~ 125 (427)
T TIGR03356 54 HRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLY--------HWDLPQALED 125 (427)
T ss_pred HhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeec--------cCCccHHHHh
Confidence 468999999999999999999999999999 7899998888999999999999999887632 2358999986
Q ss_pred CCCeEeecCChhHHHHHHHHHHHHHHHHhh
Q 003044 136 VPGISFRTDNEPFKRAMQGFTEKIVNLMKS 165 (854)
Q Consensus 136 ~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~ 165 (854)
..+- .++...++..+|.+.+++++++
T Consensus 126 ~gGw----~~~~~~~~f~~ya~~~~~~~~d 151 (427)
T TIGR03356 126 RGGW----LNRDTAEWFAEYAAVVAERLGD 151 (427)
T ss_pred cCCC----CChHHHHHHHHHHHHHHHHhCC
Confidence 5442 2466667777777777777763
No 24
>PLN02803 beta-amylase
Probab=97.59 E-value=0.00023 Score=82.01 Aligned_cols=81 Identities=23% Similarity=0.566 Sum_probs=63.8
Q ss_pred CHhHHHHHHHHHHHCCCCEEEeccccCccCCC-CCceeecccchHHHHHHHHHHcCCEE--EEecCceeeeecCCC----
Q 003044 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPS-PGNYNFEGRYDLVRFIKTIQKAGLYA--HLRIGPYVCAEWNFG---- 127 (854)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~ydf~g~~dl~~fl~la~~~gL~v--ilrpGPyi~aEw~~G---- 127 (854)
.++.-+..|+++|++|++.|.+-|.|.+.|.. |++|||+| ..++++++++.||++ ||.+ .-|+- +-|
T Consensus 105 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~ 178 (548)
T PLN02803 105 KPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSF--HQCGG-NVGDSCS 178 (548)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 45667889999999999999999999999985 99999996 777899999999996 4553 22332 112
Q ss_pred -CCCccccc----CCCeEe
Q 003044 128 -GFPVWLKY----VPGISF 141 (854)
Q Consensus 128 -GlP~WL~~----~p~~~~ 141 (854)
-||.|+.+ +|+|.+
T Consensus 179 IpLP~WV~e~~~~~pDi~f 197 (548)
T PLN02803 179 IPLPPWVLEEMSKNPDLVY 197 (548)
T ss_pred ccCCHHHHHhhhcCCCceE
Confidence 38999975 577643
No 25
>PLN02161 beta-amylase
Probab=97.55 E-value=0.00032 Score=80.57 Aligned_cols=81 Identities=23% Similarity=0.425 Sum_probs=63.5
Q ss_pred CHhHHHHHHHHHHHCCCCEEEeccccCccCC-CCCceeecccchHHHHHHHHHHcCCEEE--EecCceeeeecCCC----
Q 003044 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEP-SPGNYNFEGRYDLVRFIKTIQKAGLYAH--LRIGPYVCAEWNFG---- 127 (854)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~ydf~g~~dl~~fl~la~~~gL~vi--lrpGPyi~aEw~~G---- 127 (854)
.++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..++++++++.||++. |.+ .-|+- +-|
T Consensus 115 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NvGd~~~ 188 (531)
T PLN02161 115 RLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCF--HSNMH-LFGGKGG 188 (531)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccC
Confidence 4556788999999999999999999999998 699999996 7788999999999964 543 22322 111
Q ss_pred -CCCccccc----CCCeEe
Q 003044 128 -GFPVWLKY----VPGISF 141 (854)
Q Consensus 128 -GlP~WL~~----~p~~~~ 141 (854)
-||.|+.+ +|+|..
T Consensus 189 IpLP~WV~~~g~~~pDi~f 207 (531)
T PLN02161 189 ISLPLWIREIGDVNKDIYY 207 (531)
T ss_pred ccCCHHHHhhhccCCCceE
Confidence 28999985 577644
No 26
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.43 E-value=0.00098 Score=73.27 Aligned_cols=225 Identities=22% Similarity=0.319 Sum_probs=111.7
Q ss_pred cCcEE-ECCEEeEEEEEEeeC---CCCCHhHHHHHHHHHHHCCCCEEEeccc--cCcc--------CC----CCCceeec
Q 003044 32 RKALL-INGQRRILFSGSIHY---PRSTPDMWEDLIQKAKDGGLDVIETYVF--WNVH--------EP----SPGNYNFE 93 (854)
Q Consensus 32 ~~~~~-idG~~~~~~sg~~Hy---~r~~~~~W~~~l~k~ka~G~N~V~~yv~--Wn~h--------Ep----~~G~ydf~ 93 (854)
++.|. -||+||+.++ .-.+ .|...+.|+.-|+..|+.|||+|++=++ |..+ .| .++.+||+
T Consensus 2 ~r~f~~~dG~Pff~lg-dT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~ 80 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLG-DTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFT 80 (289)
T ss_dssp SSSEEETTS-B--EEE-EE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------T
T ss_pred CceEecCCCCEEeehh-HHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCC
Confidence 45666 7999999997 5555 3568899999999999999999998765 3322 11 12237776
Q ss_pred cc-----chHHHHHHHHHHcCCEEEEec---CceeeeecCCCCCCcccccCCCeEeecCChhHHHHHHHHHHHHHHHHhh
Q 003044 94 GR-----YDLVRFIKTIQKAGLYAHLRI---GPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKS 165 (854)
Q Consensus 94 g~-----~dl~~fl~la~~~gL~vilrp---GPyi~aEw~~GGlP~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~ 165 (854)
.- ..+++.|+.|.++||.+.|-| +||.-+-|-.| | ..| =.+.+++|.+.|+++++.
T Consensus 81 ~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~--~------~~m--------~~e~~~~Y~~yv~~Ry~~ 144 (289)
T PF13204_consen 81 RPNPAYFDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG--P------NIM--------PPENAERYGRYVVARYGA 144 (289)
T ss_dssp T----HHHHHHHHHHHHHHTT-EEEEESS-HHHHH---------T------TSS---------HHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc--c------cCC--------CHHHHHHHHHHHHHHHhc
Confidence 43 489999999999999975543 34433444333 1 111 136788999999999996
Q ss_pred cccccccCCceEEecccccccccccccCcccHHHHHHHHHHHHHcCCCcc-eeecCCC-CCCC-----cc--ccCC-CCc
Q 003044 166 ENLFESQGGPIILSQIENEYGAQSKLLGAAGHNYMTWAAKMAVEMGTGVP-WVMCKEE-DAPD-----PV--INSC-NGF 235 (854)
Q Consensus 166 ~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp-~~~~~~~-~~~~-----~v--i~~~-ng~ 235 (854)
++ +|| |=|-||+ . ......++.+.+.+.+++..-.-+ .++..+. ..++ +- +... .|-
T Consensus 145 ~~-------Nvi-W~l~gd~-~----~~~~~~~~w~~~~~~i~~~dp~~L~T~H~~~~~~~~~~~~~~~Wldf~~~Qsgh 211 (289)
T PF13204_consen 145 YP-------NVI-WILGGDY-F----DTEKTRADWDAMARGIKENDPYQLITIHPCGRTSSPDWFHDEPWLDFNMYQSGH 211 (289)
T ss_dssp -S-------SEE-EEEESSS-------TTSSHHHHHHHHHHHHHH--SS-EEEEE-BTEBTHHHHTT-TT--SEEEB--S
T ss_pred CC-------CCE-EEecCcc-C----CCCcCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCcchhhcCCCcceEEEeecCC
Confidence 64 455 5688999 1 223567777778777777543222 2222211 1110 00 1111 111
Q ss_pred cc---Cc-------CC-CCCCCCCeEEeee-CcccccccCCCCCcCCHHHHHHHHHHHHHhCC
Q 003044 236 YC---DA-------FT-PNQPYKPTIWTEA-WSGWFTEFGGPIHQRPVQDLAFAAARFIQKGG 286 (854)
Q Consensus 236 ~~---~~-------~~-~~~p~~P~~~tE~-~~Gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~ 286 (854)
.. +. .. ...|.+|.+..|- |.|.-..+.+.....+++++-..+=..+-+|+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~p~KPvin~Ep~YEg~~~~~~~~~~~~~~~dvrr~aw~svlaGa 274 (289)
T PF13204_consen 212 NRYDQDNWYYLPEEFDYRRKPVKPVINGEPCYEGIPYSRWGYNGRFSAEDVRRRAWWSVLAGA 274 (289)
T ss_dssp --TT--THHHH--HHHHTSSS---EEESS---BT-BTTSS-TS-B--HHHHHHHHHHHHHCT-
T ss_pred CcccchHHHHHhhhhhhhhCCCCCEEcCcccccCCCCCcCcccCCCCHHHHHHHHHHHHhcCC
Confidence 11 11 11 4568999999994 55554443332334567777655444555666
No 27
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.33 E-value=0.00027 Score=79.75 Aligned_cols=114 Identities=18% Similarity=0.352 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHCCCCEEEeccccCccCCC-CCceeecccchHHHHHHHHHHcCCEEEEecCceeeee----cCCCCCCcc
Q 003044 58 MWEDLIQKAKDGGLDVIETYVFWNVHEPS-PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAE----WNFGGFPVW 132 (854)
Q Consensus 58 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~ydf~g~~dl~~fl~la~~~gL~vilrpGPyi~aE----w~~GGlP~W 132 (854)
.-+..|+++|++|+..|.+.|.|.+.|.. |++|||+| ..++.+++++.||++.+-..=.-|+- .-+=-||.|
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~---Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP~W 93 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSG---YRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLPSW 93 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HH---HHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-HH
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCCHH
Confidence 46788999999999999999999999997 99999996 78889999999999654321122221 111138999
Q ss_pred ccc---CCCeEeec--------------CChhHHHHHHHHHHHHHHHHhhcccccccCCceEEecc
Q 003044 133 LKY---VPGISFRT--------------DNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQI 181 (854)
Q Consensus 133 L~~---~p~~~~Rt--------------~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi 181 (854)
+.+ ..+|.... .... ++.-+.|++.....++ ++. +.|..|||
T Consensus 94 v~~~~~~~di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~f~--~~~----~~I~~I~v 152 (402)
T PF01373_consen 94 VWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDNFS--DYL----STITEIQV 152 (402)
T ss_dssp HHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHHCH--HHH----TGEEEEEE
T ss_pred HHhccccCCcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHHHH--HHH----hhheEEEe
Confidence 974 12553211 1122 4444566666666666 332 67888886
No 28
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=96.96 E-value=0.002 Score=71.90 Aligned_cols=158 Identities=18% Similarity=0.292 Sum_probs=108.3
Q ss_pred EEEEEeeCCCCCHhHHHHHHHHHHHCCCCEEEec--cccCccCCCCCceeecccchHHHHHHHHHHcCCEEEEecCceee
Q 003044 44 LFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETY--VFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVC 121 (854)
Q Consensus 44 ~~sg~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~y--v~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vilrpGPyi~ 121 (854)
.++..++..++..+. ..+.+-..-||.|..- .-|...||++|+|||+ ..+++++.|+++||.|---+ -+
T Consensus 11 ~~G~av~~~~~~~~~---~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~---~~D~~~~~a~~~g~~vrGH~--Lv- 81 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDP---RYRELFAKHFNSVTPENEMKWGSIEPEPGRFNFE---SADAILDWARENGIKVRGHT--LV- 81 (320)
T ss_dssp EEEEEEBGGGHTHHH---HHHHHHHHH-SEEEESSTTSHHHHESBTTBEE-H---HHHHHHHHHHHTT-EEEEEE--EE-
T ss_pred CEEEEechhHcCCcH---HHHHHHHHhCCeeeeccccchhhhcCCCCccCcc---chhHHHHHHHhcCcceeeee--EE-
Confidence 688889988776542 3444445668888874 6699999999999999 89999999999999874221 11
Q ss_pred eecCCCCCCcccccCCCeEeecCChhHHHHHHHHHHHHHHHHhhcccccccCCceEEeccccccccccc---------cc
Q 003044 122 AEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSK---------LL 192 (854)
Q Consensus 122 aEw~~GGlP~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~---------~~ 192 (854)
|.. ..|.|+...+... ....+...++++++++.++.++++. |.|..|-|=||--.... .+
T Consensus 82 --W~~-~~P~w~~~~~~~~-~~~~~~~~~~l~~~I~~v~~~y~~~-------g~i~~WDVvNE~i~~~~~~~~~r~~~~~ 150 (320)
T PF00331_consen 82 --WHS-QTPDWVFNLANGS-PDEKEELRARLENHIKTVVTRYKDK-------GRIYAWDVVNEAIDDDGNPGGLRDSPWY 150 (320)
T ss_dssp --ESS-SS-HHHHTSTTSS-BHHHHHHHHHHHHHHHHHHHHTTTT-------TTESEEEEEES-B-TTSSSSSBCTSHHH
T ss_pred --Ecc-cccceeeeccCCC-cccHHHHHHHHHHHHHHHHhHhccc-------cceEEEEEeeecccCCCccccccCChhh
Confidence 433 7899998751110 0001247888999999998888721 89999999999643221 12
Q ss_pred CcccHHHHHHHHHHHHHcCCCcceeecCC
Q 003044 193 GAAGHNYMTWAAKMAVEMGTGVPWVMCKE 221 (854)
Q Consensus 193 ~~~~~~y~~~l~~~~~~~g~~vp~~~~~~ 221 (854)
...+.+|+...-+.+++...++.+|.++-
T Consensus 151 ~~lG~~yi~~aF~~A~~~~P~a~L~~NDy 179 (320)
T PF00331_consen 151 DALGPDYIADAFRAAREADPNAKLFYNDY 179 (320)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTSEEEEEES
T ss_pred hcccHhHHHHHHHHHHHhCCCcEEEeccc
Confidence 12346788888888888877888888774
No 29
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=96.82 E-value=0.011 Score=64.86 Aligned_cols=133 Identities=21% Similarity=0.311 Sum_probs=100.1
Q ss_pred HHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCeEeecCC
Q 003044 66 AKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDN 145 (854)
Q Consensus 66 ~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vilrpGPyi~aEw~~GGlP~WL~~~p~~~~Rt~d 145 (854)
.|+.+.=|-+.-.=|+..||++|.|+|+ --++..+.|+++||.+ |-=+-| |-+ -.|.|+..+. -+-
T Consensus 55 ~re~n~iTpenemKwe~i~p~~G~f~Fe---~AD~ia~FAr~h~m~l--hGHtLv---W~~-q~P~W~~~~e-----~~~ 120 (345)
T COG3693 55 ARECNQITPENEMKWEAIEPERGRFNFE---AADAIANFARKHNMPL--HGHTLV---WHS-QVPDWLFGDE-----LSK 120 (345)
T ss_pred HhhhcccccccccccccccCCCCccCcc---chHHHHHHHHHcCCee--ccceee---ecc-cCCchhhccc-----cCh
Confidence 5566655555667799999999999999 5899999999999954 332333 433 6899998633 234
Q ss_pred hhHHHHHHHHHHHHHHHHhhcccccccCCceEEeccccccccc----cc---ccCcccHHHHHHHHHHHHHcCCCcceee
Q 003044 146 EPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQ----SK---LLGAAGHNYMTWAAKMAVEMGTGVPWVM 218 (854)
Q Consensus 146 ~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~----~~---~~~~~~~~y~~~l~~~~~~~g~~vp~~~ 218 (854)
++.++.+++++..++.+.+ |-|+.|-|=||--.- .. ..+..+.+|+++.-+.+++.+-+--++.
T Consensus 121 ~~~~~~~e~hI~tV~~rYk---------g~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~ 191 (345)
T COG3693 121 EALAKMVEEHIKTVVGRYK---------GSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVI 191 (345)
T ss_pred HHHHHHHHHHHHHHHHhcc---------CceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEe
Confidence 7789999999999999998 358999999997432 11 1223578999999999999887777777
Q ss_pred cCC
Q 003044 219 CKE 221 (854)
Q Consensus 219 ~~~ 221 (854)
++-
T Consensus 192 NDY 194 (345)
T COG3693 192 NDY 194 (345)
T ss_pred ecc
Confidence 663
No 30
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=96.59 E-value=0.0027 Score=74.12 Aligned_cols=98 Identities=17% Similarity=0.241 Sum_probs=74.1
Q ss_pred HhHHHHHHHHHHHCCCCEEEeccccCccCCC--CCceeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccc
Q 003044 56 PDMWEDLIQKAKDGGLDVIETYVFWNVHEPS--PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWL 133 (854)
Q Consensus 56 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~ydf~g~~dl~~fl~la~~~gL~vilrpGPyi~aEw~~GGlP~WL 133 (854)
-..|+++|+.||++|+|+-++-+.|...+|. +|++|-+|....+++|+.+.++||..++-- -.-.+|.||
T Consensus 57 y~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL--------~H~~~P~~l 128 (455)
T PF00232_consen 57 YHRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTL--------YHFDLPLWL 128 (455)
T ss_dssp HHHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEE--------ESS--BHHH
T ss_pred hhhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeee--------eecccccce
Confidence 3568999999999999999999999999999 699999999999999999999999976652 255699999
Q ss_pred ccCCCeEeecCChhHHHHHHHHHHHHHHHHhh
Q 003044 134 KYVPGISFRTDNEPFKRAMQGFTEKIVNLMKS 165 (854)
Q Consensus 134 ~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~ 165 (854)
.+.-+- .++...+...+|.+.+++.+.+
T Consensus 129 ~~~ggw----~~~~~~~~F~~Ya~~~~~~~gd 156 (455)
T PF00232_consen 129 EDYGGW----LNRETVDWFARYAEFVFERFGD 156 (455)
T ss_dssp HHHTGG----GSTHHHHHHHHHHHHHHHHHTT
T ss_pred eecccc----cCHHHHHHHHHHHHHHHHHhCC
Confidence 874332 2356667777777777777773
No 31
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=96.46 E-value=0.0065 Score=60.64 Aligned_cols=66 Identities=26% Similarity=0.459 Sum_probs=50.0
Q ss_pred CCceEEEEEEECCCCC--CCeEEeeCCC-ccEEEEECCeeeeeeecccccCCCCCccccCCcCCCcccCCCCCCceeEEe
Q 003044 619 QPLMWHKAYFNAPEGD--EPLALDMEGM-GKGQIWINGQSVGRYWTAYAKGDCNGCNYVGGYRPTKCQLGCGQPTQRWYH 695 (854)
Q Consensus 619 ~~~~wyk~~F~~p~~~--dpt~Ld~~g~-gKG~vwVNG~nLGRYW~~~~~g~~~~~~~~G~~~~~~~~~~~~~PQqtlYh 695 (854)
....|||.+|++|... ..++|.+.|. ....|||||+-||+-... | .. .-|-
T Consensus 67 ~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~--------------~-----------~~-~~~d 120 (167)
T PF02837_consen 67 SGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEGG--------------Y-----------TP-FEFD 120 (167)
T ss_dssp CSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEEST--------------T-----------S--EEEE
T ss_pred CceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCCC--------------c-----------CC-eEEe
Confidence 4679999999999743 3589999987 589999999999997611 1 22 3355
Q ss_pred cCcccccCCc-ceEEEE
Q 003044 696 VPRSWLKPTQ-NFLVVF 711 (854)
Q Consensus 696 VP~~~Lk~g~-N~lvif 711 (854)
|+. .|++|. |+|.|.
T Consensus 121 It~-~l~~g~~N~l~V~ 136 (167)
T PF02837_consen 121 ITD-YLKPGEENTLAVR 136 (167)
T ss_dssp CGG-GSSSEEEEEEEEE
T ss_pred Chh-hccCCCCEEEEEE
Confidence 875 789888 988763
No 32
>PRK10150 beta-D-glucuronidase; Provisional
Probab=96.44 E-value=0.014 Score=70.70 Aligned_cols=100 Identities=22% Similarity=0.174 Sum_probs=69.0
Q ss_pred CCccEEEEEEEecCCCCcccccCCCCceEEeCCcceEEEEEECCEEEEEEEcccccceeEEEeeeeccCCCC-EEEEEEe
Q 003044 467 DASDYLWYITSVDIGSSESFLHGGELPTLIVQSTGHALHIFINGQLSGSAFGTREARRFMYTGKVNLRAGRN-KIALLSV 545 (854)
Q Consensus 467 d~~GYl~Y~t~i~~~~~~~~~~~g~~~~L~i~~~~D~~~VfVng~~~G~~~~~~~~~~~~~~~~i~l~~g~n-~L~ILve 545 (854)
+..|..||+++|.++... .+....|.+.++...+.|||||+++|...+.. ..+.+++.--|+.|.+ +|.|.|.
T Consensus 62 ~~~G~~WYrr~f~lp~~~----~gk~v~L~Fegv~~~a~V~lNG~~vg~~~~~~--~~f~~DIT~~l~~G~~n~L~V~v~ 135 (604)
T PRK10150 62 NYVGDVWYQREVFIPKGW----AGQRIVLRFGSVTHYAKVWVNGQEVMEHKGGY--TPFEADITPYVYAGKSVRITVCVN 135 (604)
T ss_pred CCcccEEEEEEEECCccc----CCCEEEEEECcccceEEEEECCEEeeeEcCCc--cceEEeCchhccCCCceEEEEEEe
Confidence 467899999999886432 24457899999999999999999999976532 3455555544677754 9999997
Q ss_pred ccCCc---cccCCC-------------C-cccccccccEEEecc
Q 003044 546 AVGLP---NVGGHY-------------E-TWNTGILGPVALHGL 572 (854)
Q Consensus 546 n~Grv---N~G~~~-------------~-~~~KGI~g~V~l~g~ 572 (854)
|.-+. ..|... + ....||..+|.|.-.
T Consensus 136 n~~~~~~~p~g~~~~~~~~~~k~~~~~d~~~~~GI~r~V~L~~~ 179 (604)
T PRK10150 136 NELNWQTLPPGNVIEDGNGKKKQKYNFDFFNYAGIHRPVMLYTT 179 (604)
T ss_pred cCCCcccCCCCccccCCccccccccccccccccCCCceEEEEEc
Confidence 74211 011100 0 136799999998543
No 33
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.18 E-value=0.083 Score=53.54 Aligned_cols=134 Identities=15% Similarity=0.191 Sum_probs=78.8
Q ss_pred CCCCHhHHHHHHHHHHHCCCCEEEeccccCccC-----CC---CCceeecccchHHHHHHHHHHcCCEEEEecCceeeee
Q 003044 52 PRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHE-----PS---PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAE 123 (854)
Q Consensus 52 ~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hE-----p~---~G~ydf~g~~dl~~fl~la~~~gL~vilrpGPyi~aE 123 (854)
-.++++.|+..++.||++|+++|=+- |...+ |. ++.|.-....-|+.+|++|++.||+|.+..+.
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~----- 87 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF----- 87 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC-----
Confidence 46899999999999999999998431 22211 11 22233334458999999999999999987531
Q ss_pred cCCCCCCcccccCCCeEeecCChhH-HHHHHHHHHHHHHHHhhcccccccCCceEEecccccccccccccCcccHHHHHH
Q 003044 124 WNFGGFPVWLKYVPGISFRTDNEPF-KRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLLGAAGHNYMTW 202 (854)
Q Consensus 124 w~~GGlP~WL~~~p~~~~Rt~d~~y-~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~ 202 (854)
-|.|-.+ .|+.. .+..++..++|..... +....=+|=|=.|..... ....++.+.
T Consensus 88 -----~~~~w~~--------~~~~~~~~~~~~v~~el~~~yg-------~h~sf~GWYip~E~~~~~----~~~~~~~~~ 143 (166)
T PF14488_consen 88 -----DPDYWDQ--------GDLDWEAERNKQVADELWQRYG-------HHPSFYGWYIPYEIDDYN----WNAPERFAL 143 (166)
T ss_pred -----Cchhhhc--------cCHHHHHHHHHHHHHHHHHHHc-------CCCCCceEEEecccCCcc----cchHHHHHH
Confidence 1333331 22222 1222233444444333 333667788888887642 234556666
Q ss_pred HHHHHHHcCCCcce
Q 003044 203 AAKMAVEMGTGVPW 216 (854)
Q Consensus 203 l~~~~~~~g~~vp~ 216 (854)
|.+.+++.--+-|+
T Consensus 144 l~~~lk~~s~~~Pv 157 (166)
T PF14488_consen 144 LGKYLKQISPGKPV 157 (166)
T ss_pred HHHHHHHhCCCCCe
Confidence 66666554223343
No 34
>PLN02849 beta-glucosidase
Probab=96.00 E-value=0.013 Score=69.21 Aligned_cols=100 Identities=20% Similarity=0.252 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHCCCCEEEeccccCccCCC-CCceeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccccc
Q 003044 57 DMWEDLIQKAKDGGLDVIETYVFWNVHEPS-PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKY 135 (854)
Q Consensus 57 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~ydf~g~~dl~~fl~la~~~gL~vilrpGPyi~aEw~~GGlP~WL~~ 135 (854)
..|+++++.||++|+|+-++-|-|.-.+|. .|.+|=+|....+++|+.+.++||.-++-- -.=-+|.||.+
T Consensus 79 hrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 150 (503)
T PLN02849 79 HKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTL--------FHYDHPQYLED 150 (503)
T ss_pred HhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEee--------cCCCCcHHHHH
Confidence 458999999999999999999999999996 477888899999999999999999966542 12248999987
Q ss_pred C-CCeEeecCChhHHHHHHHHHHHHHHHHh
Q 003044 136 V-PGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (854)
Q Consensus 136 ~-p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 164 (854)
. -|-.=|..=..|.++++..++++..+++
T Consensus 151 ~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk 180 (503)
T PLN02849 151 DYGGWINRRIIKDFTAYADVCFREFGNHVK 180 (503)
T ss_pred hcCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 4 4421121123344444444444444444
No 35
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=95.99 E-value=0.02 Score=65.97 Aligned_cols=115 Identities=16% Similarity=0.109 Sum_probs=72.5
Q ss_pred CHhHH-----HHHHHHHHHCCCCEEEeccccCccCCCC----CceeecccchHHHHHHHHHHcCCEEEEec----Cceee
Q 003044 55 TPDMW-----EDLIQKAKDGGLDVIETYVFWNVHEPSP----GNYNFEGRYDLVRFIKTIQKAGLYAHLRI----GPYVC 121 (854)
Q Consensus 55 ~~~~W-----~~~l~k~ka~G~N~V~~yv~Wn~hEp~~----G~ydf~g~~dl~~fl~la~~~gL~vilrp----GPyi~ 121 (854)
...-| ++.+..||.+|||+||+++.|..+++.. ...+=+--..|++.|+.|++.||+|++-. |.-.|
T Consensus 66 ~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~ 145 (407)
T COG2730 66 LESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNG 145 (407)
T ss_pred chhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCC
Confidence 45568 8999999999999999999954446543 22211212378999999999999999983 22221
Q ss_pred eecCCCCCCcccccCCCeEeecCChhHHHHHHHHHHHHHHHHhhcccccccCCceEEecccccccc
Q 003044 122 AEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGA 187 (854)
Q Consensus 122 aEw~~GGlP~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~ 187 (854)
-| ..|....-. .....+++..+..+.|+.+.+ +.-.||++|+=||.-.
T Consensus 146 ~~------~s~~~~~~~-----~~~~~~~~~~~~w~~ia~~f~-------~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 146 HE------HSGYTSDYK-----EENENVEATIDIWKFIANRFK-------NYDTVIGFELINEPNG 193 (407)
T ss_pred cC------ccccccccc-----ccchhHHHHHHHHHHHHHhcc-------CCCceeeeeeecCCcc
Confidence 11 222221100 022233444445555555555 3458999999999874
No 36
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=95.98 E-value=0.0072 Score=70.88 Aligned_cols=96 Identities=14% Similarity=0.151 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHCCCCEEEeccccCccCCC--CCceeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccc
Q 003044 57 DMWEDLIQKAKDGGLDVIETYVFWNVHEPS--PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLK 134 (854)
Q Consensus 57 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~ydf~g~~dl~~fl~la~~~gL~vilrpGPyi~aEw~~GGlP~WL~ 134 (854)
..|+++++.||++|+|+.++-+-|...+|. ++++|=+|....+++|+.+.++||..++-- ..=.+|.||.
T Consensus 71 hry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL--------~H~~~P~~l~ 142 (474)
T PRK09852 71 HRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTL--------CHFDVPMHLV 142 (474)
T ss_pred hhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 447899999999999999999999999997 556787888899999999999999987653 1336899997
Q ss_pred cC-CCeEeecCChhHHHHHHHHHHHHHHHHh
Q 003044 135 YV-PGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (854)
Q Consensus 135 ~~-p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 164 (854)
.. -+- .++...++..+|.+.+++.+.
T Consensus 143 ~~~GGW----~~~~~~~~F~~ya~~~~~~fg 169 (474)
T PRK09852 143 TEYGSW----RNRKMVEFFSRYARTCFEAFD 169 (474)
T ss_pred HhcCCC----CCHHHHHHHHHHHHHHHHHhc
Confidence 63 332 234455555555555555555
No 37
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=95.95 E-value=0.0079 Score=70.64 Aligned_cols=95 Identities=16% Similarity=0.170 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHCCCCEEEeccccCccCCC--CCceeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccccc
Q 003044 58 MWEDLIQKAKDGGLDVIETYVFWNVHEPS--PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKY 135 (854)
Q Consensus 58 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~ydf~g~~dl~~fl~la~~~gL~vilrpGPyi~aEw~~GGlP~WL~~ 135 (854)
.|+++++.||++|+|+-++-|-|....|. +|++|-+|....+++|+.+.++||..++-- -.=.+|.||.+
T Consensus 70 ry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL--------~H~dlP~~L~~ 141 (477)
T PRK15014 70 HYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITL--------SHFEMPLHLVQ 141 (477)
T ss_pred ccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHHH
Confidence 47899999999999999999999999997 567888898999999999999999977663 13358999976
Q ss_pred C-CCeEeecCChhHHHHHHHHHHHHHHHHh
Q 003044 136 V-PGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (854)
Q Consensus 136 ~-p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 164 (854)
. -+- .++...++-.+|.+.+++.+.
T Consensus 142 ~yGGW----~n~~~~~~F~~Ya~~~f~~fg 167 (477)
T PRK15014 142 QYGSW----TNRKVVDFFVRFAEVVFERYK 167 (477)
T ss_pred hcCCC----CChHHHHHHHHHHHHHHHHhc
Confidence 4 442 245556666666666666666
No 38
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=95.86 E-value=0.024 Score=63.46 Aligned_cols=103 Identities=26% Similarity=0.480 Sum_probs=65.7
Q ss_pred HHHHHHHHHCCCCEEEeccccCccCCCC-CceeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCC
Q 003044 60 EDLIQKAKDGGLDVIETYVFWNVHEPSP-GNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPG 138 (854)
Q Consensus 60 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~-G~ydf~g~~dl~~fl~la~~~gL~vilrpGPyi~aEw~~GGlP~WL~~~p~ 138 (854)
+|.|+-+|+.|+|.||.=| |+ .|.. |..|.+ +..+..+-|+++||.|+|.+- |. -.|- +|+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv--~P~~~g~~~~~---~~~~~akrak~~Gm~vlldfH-YS---------D~Wa--DPg 88 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WV--NPYDGGYNDLE---DVIALAKRAKAAGMKVLLDFH-YS---------DFWA--DPG 88 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--S--S-TTTTTTSHH---HHHHHHHHHHHTT-EEEEEE--SS---------SS----BTT
T ss_pred CCHHHHHHhcCCCeEEEEe-cc--CCcccccCCHH---HHHHHHHHHHHCCCeEEEeec-cc---------CCCC--CCC
Confidence 5789999999999999987 54 4544 666655 666777778899999999863 21 1222 232
Q ss_pred eEe------ecCChhHHHHHHHHHHHHHHHHhhcccccccCCceEEeccccccc
Q 003044 139 ISF------RTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYG 186 (854)
Q Consensus 139 ~~~------Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg 186 (854)
-.. -.+-..-.++|..|.+.++..|++ +|=.+=||||-||..
T Consensus 89 ~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~------~G~~pd~VQVGNEin 136 (332)
T PF07745_consen 89 KQNKPAAWANLSFDQLAKAVYDYTKDVLQALKA------AGVTPDMVQVGNEIN 136 (332)
T ss_dssp B-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHH------TT--ESEEEESSSGG
T ss_pred CCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHH------CCCCccEEEeCcccc
Confidence 111 112345678899999999999994 455788999999975
No 39
>PLN02998 beta-glucosidase
Probab=95.84 E-value=0.0093 Score=70.35 Aligned_cols=100 Identities=16% Similarity=0.217 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHCCCCEEEeccccCccCCC-CCceeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccccc
Q 003044 57 DMWEDLIQKAKDGGLDVIETYVFWNVHEPS-PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKY 135 (854)
Q Consensus 57 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~ydf~g~~dl~~fl~la~~~gL~vilrpGPyi~aEw~~GGlP~WL~~ 135 (854)
..|+++++.||++|+|+-++-|-|.-.+|. .|.+|-+|...-+++|+.+.++||..++--= =| -+|.||.+
T Consensus 82 hry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~-----H~---dlP~~L~~ 153 (497)
T PLN02998 82 HKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLH-----HF---DLPQALED 153 (497)
T ss_pred HhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEec-----CC---CCCHHHHH
Confidence 458999999999999999999999999996 6788888999999999999999998665421 13 48999986
Q ss_pred C-CCeEeecCChhHHHHHHHHHHHHHHHHh
Q 003044 136 V-PGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (854)
Q Consensus 136 ~-p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 164 (854)
. -|-.=|..=..|.++++..++++..+++
T Consensus 154 ~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk 183 (497)
T PLN02998 154 EYGGWLSQEIVRDFTAYADTCFKEFGDRVS 183 (497)
T ss_pred hhCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 4 4431122223455555444444444444
No 40
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=95.81 E-value=0.031 Score=71.49 Aligned_cols=95 Identities=18% Similarity=0.263 Sum_probs=67.7
Q ss_pred ccEEEEEEEecCCCCcccccCCCCceEEeCCcceEEEEEECCEEEEEEEcccccceeEEEeeeeccCCCCEEEEEEeccC
Q 003044 469 SDYLWYITSVDIGSSESFLHGGELPTLIVQSTGHALHIFINGQLSGSAFGTREARRFMYTGKVNLRAGRNKIALLSVAVG 548 (854)
Q Consensus 469 ~GYl~Y~t~i~~~~~~~~~~~g~~~~L~i~~~~D~~~VfVng~~~G~~~~~~~~~~~~~~~~i~l~~g~n~L~ILven~G 548 (854)
.+-.|||++|.++..- .|.+..|.+.++...+.|||||+++|...+.. ..+.+++.--|+.|.|+|.|.|.+..
T Consensus 108 n~~g~Yrr~F~lp~~~----~gkrv~L~FeGV~s~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~LaV~V~~~~ 181 (1021)
T PRK10340 108 NPTGAYQRTFTLSDGW----QGKQTIIKFDGVETYFEVYVNGQYVGFSKGSR--LTAEFDISAMVKTGDNLLCVRVMQWA 181 (1021)
T ss_pred CCeEEEEEEEEeCccc----ccCcEEEEECccceEEEEEECCEEeccccCCC--ccEEEEcchhhCCCccEEEEEEEecC
Confidence 3567999999886432 24467899999999999999999999876432 34555554457788999999997543
Q ss_pred CccccCCCCc----ccccccccEEEecc
Q 003044 549 LPNVGGHYET----WNTGILGPVALHGL 572 (854)
Q Consensus 549 rvN~G~~~~~----~~KGI~g~V~l~g~ 572 (854)
. +.+++. ...||..+|.|--.
T Consensus 182 d---~s~le~qd~w~~sGI~R~V~L~~~ 206 (1021)
T PRK10340 182 D---STYLEDQDMWWLAGIFRDVYLVGK 206 (1021)
T ss_pred C---CCccccCCccccccccceEEEEEe
Confidence 2 222321 24799999988543
No 41
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=95.66 E-value=0.016 Score=68.20 Aligned_cols=100 Identities=17% Similarity=0.142 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHHCCCCEEEeccccCccCCC--CCceeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccc
Q 003044 57 DMWEDLIQKAKDGGLDVIETYVFWNVHEPS--PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLK 134 (854)
Q Consensus 57 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~ydf~g~~dl~~fl~la~~~gL~vilrpGPyi~aEw~~GGlP~WL~ 134 (854)
..|+++++.||++|+|+-++-|-|.-.+|. +|++|=+|...-+++|+.+.++||..++-- -.=-+|.||.
T Consensus 73 hry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL--------~H~dlP~~L~ 144 (478)
T PRK09593 73 HHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTI--------THFDCPMHLI 144 (478)
T ss_pred HhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------cccCCCHHHH
Confidence 458999999999999999999999999997 667888888999999999999999866542 1224899998
Q ss_pred cC-CCeEeecCChhHHHHHHHHHHHHHHHHh
Q 003044 135 YV-PGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (854)
Q Consensus 135 ~~-p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 164 (854)
+. -+-.=|..=..|.++++..++++...++
T Consensus 145 ~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk 175 (478)
T PRK09593 145 EEYGGWRNRKMVGFYERLCRTLFTRYKGLVK 175 (478)
T ss_pred hhcCCCCChHHHHHHHHHHHHHHHHhcCcCC
Confidence 64 4431121123455555555555544444
No 42
>PLN02814 beta-glucosidase
Probab=95.60 E-value=0.012 Score=69.42 Aligned_cols=97 Identities=16% Similarity=0.259 Sum_probs=72.6
Q ss_pred HhHHHHHHHHHHHCCCCEEEeccccCccCCC-CCceeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccc
Q 003044 56 PDMWEDLIQKAKDGGLDVIETYVFWNVHEPS-PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLK 134 (854)
Q Consensus 56 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~ydf~g~~dl~~fl~la~~~gL~vilrpGPyi~aEw~~GGlP~WL~ 134 (854)
-..|+++++.||++|+|+-++-|-|.-.+|. +|.+|-+|...-+++|+.+.++||..++--= =| -+|.||.
T Consensus 76 Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~-----H~---dlP~~L~ 147 (504)
T PLN02814 76 YHKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLY-----HY---DLPQSLE 147 (504)
T ss_pred HHhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEec-----CC---CCCHHHH
Confidence 3458999999999999999999999999996 6889999999999999999999998665521 14 3899998
Q ss_pred cC-CCeEeecCChhHHHHHHHHHHHHHHHHh
Q 003044 135 YV-PGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (854)
Q Consensus 135 ~~-p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 164 (854)
+. -|- .++...++-.+|.+.+++.+.
T Consensus 148 ~~yGGW----~n~~~i~~F~~YA~~~f~~fg 174 (504)
T PLN02814 148 DEYGGW----INRKIIEDFTAFADVCFREFG 174 (504)
T ss_pred HhcCCc----CChhHHHHHHHHHHHHHHHhC
Confidence 74 442 233333444444444444444
No 43
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=95.56 E-value=0.016 Score=68.10 Aligned_cols=96 Identities=15% Similarity=0.116 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHCCCCEEEeccccCccCCC-CCceeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccccc
Q 003044 57 DMWEDLIQKAKDGGLDVIETYVFWNVHEPS-PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKY 135 (854)
Q Consensus 57 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~ydf~g~~dl~~fl~la~~~gL~vilrpGPyi~aEw~~GGlP~WL~~ 135 (854)
..|+++++.||++|+|+-++-|.|.-.+|. .|.+|-+|...-+++|+.+.++||.-++-- -.=.+|.||.+
T Consensus 54 ~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 125 (469)
T PRK13511 54 HRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTL--------HHFDTPEALHS 125 (469)
T ss_pred hhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEe--------cCCCCcHHHHH
Confidence 347899999999999999999999999997 578888899999999999999999866552 12258999987
Q ss_pred CCCeEeecCChhHHHHHHHHHHHHHHHHh
Q 003044 136 VPGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (854)
Q Consensus 136 ~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 164 (854)
.-+- .++...++..+|.+.+++.+.
T Consensus 126 ~GGW----~n~~~v~~F~~YA~~~~~~fg 150 (469)
T PRK13511 126 NGDW----LNRENIDHFVRYAEFCFEEFP 150 (469)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 5332 234444444455555544444
No 44
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=95.48 E-value=0.018 Score=67.69 Aligned_cols=100 Identities=17% Similarity=0.127 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHCCCCEEEeccccCccCCC--CCceeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccc
Q 003044 57 DMWEDLIQKAKDGGLDVIETYVFWNVHEPS--PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLK 134 (854)
Q Consensus 57 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~ydf~g~~dl~~fl~la~~~gL~vilrpGPyi~aEw~~GGlP~WL~ 134 (854)
..|+++++.||++|+|+-++-|-|.-.+|. +|++|=+|...-+++|+.+.++||.-++-- -.=-+|.||.
T Consensus 67 hry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL--------~H~dlP~~L~ 138 (476)
T PRK09589 67 HRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTL--------SHFEMPYHLV 138 (476)
T ss_pred HhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------cCCCCCHHHH
Confidence 458999999999999999999999999997 566888888899999999999999866552 1224899997
Q ss_pred cC-CCeEeecCChhHHHHHHHHHHHHHHHHh
Q 003044 135 YV-PGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (854)
Q Consensus 135 ~~-p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 164 (854)
+. -+-.=|..=..|.++++.-++++..+++
T Consensus 139 ~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 169 (476)
T PRK09589 139 TEYGGWRNRKLIDFFVRFAEVVFTRYKDKVK 169 (476)
T ss_pred HhcCCcCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 64 4431122123454555444444444444
No 45
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=95.38 E-value=0.021 Score=66.99 Aligned_cols=96 Identities=13% Similarity=0.086 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHHCCCCEEEeccccCccCCC-CCceeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccccc
Q 003044 57 DMWEDLIQKAKDGGLDVIETYVFWNVHEPS-PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKY 135 (854)
Q Consensus 57 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~ydf~g~~dl~~fl~la~~~gL~vilrpGPyi~aEw~~GGlP~WL~~ 135 (854)
..|+++++.||++|+|+-++-+-|...+|. +|++|=+|...-+++|+.+.++||..++--= .=-+|.||.+
T Consensus 53 hry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~--------H~dlP~~L~~ 124 (467)
T TIGR01233 53 HKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH--------HFDTPEALHS 124 (467)
T ss_pred hhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc--------CCCCcHHHHH
Confidence 448899999999999999999999999996 6788888989999999999999999766531 2248999987
Q ss_pred CCCeEeecCChhHHHHHHHHHHHHHHHHh
Q 003044 136 VPGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (854)
Q Consensus 136 ~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 164 (854)
.-|- .++...++-.+|.+.+++.+.
T Consensus 125 ~GGW----~n~~~v~~F~~YA~~~f~~fg 149 (467)
T TIGR01233 125 NGDF----LNRENIEHFIDYAAFCFEEFP 149 (467)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 5442 234444555555555555554
No 46
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=95.29 E-value=0.062 Score=68.78 Aligned_cols=94 Identities=21% Similarity=0.258 Sum_probs=65.4
Q ss_pred ccEEEEEEEecCCCCcccccCCC-CceEEeCCcceEEEEEECCEEEEEEEcccccceeEEEeeeeccCCCCEEEEEEecc
Q 003044 469 SDYLWYITSVDIGSSESFLHGGE-LPTLIVQSTGHALHIFINGQLSGSAFGTREARRFMYTGKVNLRAGRNKIALLSVAV 547 (854)
Q Consensus 469 ~GYl~Y~t~i~~~~~~~~~~~g~-~~~L~i~~~~D~~~VfVng~~~G~~~~~~~~~~~~~~~~i~l~~g~n~L~ILven~ 547 (854)
.+-.|||++|+++..- .+. +..|.+.++.-.+.|||||+++|...+. ...+.|++.--|+.|.|+|.|.|...
T Consensus 119 n~~gwYrr~F~vp~~w----~~~~rv~L~FeGV~~~a~VwvNG~~VG~~~g~--~~pfefDIT~~l~~G~N~L~V~V~~~ 192 (1027)
T PRK09525 119 NPTGCYSLTFTVDESW----LQSGQTRIIFDGVNSAFHLWCNGRWVGYSQDS--RLPAEFDLSPFLRAGENRLAVMVLRW 192 (1027)
T ss_pred CCeEEEEEEEEeChhh----cCCCeEEEEECeeccEEEEEECCEEEEeecCC--CceEEEEChhhhcCCccEEEEEEEec
Confidence 4678999999886431 122 4689999999999999999999987543 23355555545778899999988532
Q ss_pred CCccccCCCCc----ccccccccEEEec
Q 003044 548 GLPNVGGHYET----WNTGILGPVALHG 571 (854)
Q Consensus 548 GrvN~G~~~~~----~~KGI~g~V~l~g 571 (854)
- -|.+++. ...||..+|.|--
T Consensus 193 s---dgs~~e~qd~w~~sGI~R~V~L~~ 217 (1027)
T PRK09525 193 S---DGSYLEDQDMWRMSGIFRDVSLLH 217 (1027)
T ss_pred C---CCCccccCCceeeccccceEEEEE
Confidence 2 2222321 2469999998843
No 47
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.59 E-value=0.16 Score=55.26 Aligned_cols=116 Identities=26% Similarity=0.314 Sum_probs=75.1
Q ss_pred HHHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHH---HcCCEEEEecCceeeeecCCCCCCccccc
Q 003044 59 WEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQ---KAGLYAHLRIGPYVCAEWNFGGFPVWLKY 135 (854)
Q Consensus 59 W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~---~~gL~vilrpGPyi~aEw~~GGlP~WL~~ 135 (854)
=.|.|+-+|+.|+|.|+.-| ||..--.-|.=-=.|+.|+.+.+++|+ ..||+|++.+= | ++| =.=|+- .+
T Consensus 65 ~qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFH-Y--SDf--waDPak-Q~ 137 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFH-Y--SDF--WADPAK-QK 137 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeecc-c--hhh--ccChhh-cC
Confidence 46899999999999999855 665433444433346789999998865 57999999852 1 010 000110 01
Q ss_pred CCCeEeecCChhHHHHHHHHHHHHHHHHhhcccccccCCceEEecccccccc
Q 003044 136 VPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGA 187 (854)
Q Consensus 136 ~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~ 187 (854)
+|....-.+-..-.+++-.|.+..+..+++. |=-+=||||-||-.+
T Consensus 138 kPkaW~~l~fe~lk~avy~yTk~~l~~m~~e------Gi~pdmVQVGNEtn~ 183 (403)
T COG3867 138 KPKAWENLNFEQLKKAVYSYTKYVLTTMKKE------GILPDMVQVGNETNG 183 (403)
T ss_pred CcHHhhhcCHHHHHHHHHHHHHHHHHHHHHc------CCCccceEeccccCC
Confidence 2322122333455677788888888888844 446679999999753
No 48
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=94.37 E-value=0.35 Score=57.25 Aligned_cols=322 Identities=18% Similarity=0.282 Sum_probs=151.1
Q ss_pred EEeEEEEEEeeC------CCCCHhHHHHHHHHH---HHCCCCEEEeccc--------cCccCCCCC-----ceeecc--c
Q 003044 40 QRRILFSGSIHY------PRSTPDMWEDLIQKA---KDGGLDVIETYVF--------WNVHEPSPG-----NYNFEG--R 95 (854)
Q Consensus 40 ~~~~~~sg~~Hy------~r~~~~~W~~~l~k~---ka~G~N~V~~yv~--------Wn~hEp~~G-----~ydf~g--~ 95 (854)
+++.=++|++=- .+.+++.=+..|+.+ +.+|++.+|+.+- +.+-+ .|+ .|+... .
T Consensus 74 Q~i~GFGga~Tdasa~~l~~l~~~~r~~ll~~~F~~~G~g~s~~R~pIgssDfs~~~Yty~d-~~~D~~l~~Fs~~~~d~ 152 (496)
T PF02055_consen 74 QTIDGFGGAFTDASAYNLQKLSEEQRDELLRSLFSEDGIGYSLLRVPIGSSDFSTRPYTYDD-VPGDFNLSNFSIAREDK 152 (496)
T ss_dssp EE--EEEEE--HHHHHHHHTS-HHHHHHHHHHHHSTTTT---EEEEEES--SSSSS---ST--STTHTTTTT---HHHHH
T ss_pred eEEEEEeeeHHHHHHHHHHhCCHHHHHHHHHHHhhcCCceEEEEEeeccCcCCcCCcccccC-CCCCCccccCCccccch
Confidence 445557777641 334444333333333 4589999998874 33322 233 222221 1
Q ss_pred chHHHHHHHHHHc--CCEEEEecCceeeeecCCCCCCcccccCCCe----Eee-cCChhHHHHHHHHHHHHHHHHhhccc
Q 003044 96 YDLVRFIKTIQKA--GLYAHLRIGPYVCAEWNFGGFPVWLKYVPGI----SFR-TDNEPFKRAMQGFTEKIVNLMKSENL 168 (854)
Q Consensus 96 ~dl~~fl~la~~~--gL~vilrpGPyi~aEw~~GGlP~WL~~~p~~----~~R-t~d~~y~~~~~~~~~~l~~~l~~~~~ 168 (854)
+.+..+|+.|++. +|+++.-| |. .|+|+.....+ .++ ..++.|.++...||.+-++.++++
T Consensus 153 ~~~ip~ik~a~~~~~~lki~aSp-------WS---pP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~-- 220 (496)
T PF02055_consen 153 KYKIPLIKEALAINPNLKIFASP-------WS---PPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKE-- 220 (496)
T ss_dssp TTHHHHHHHHHHHHTT-EEEEEE-------S------GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCT--
T ss_pred hhHHHHHHHHHHhCCCcEEEEec-------CC---CCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHC--
Confidence 2335677777764 57777776 64 79999864322 244 234678888888888888888844
Q ss_pred ccccCCceEEecccccccccc---cccC------cccHHHHH-HHHHHHHHcCC--CcceeecCCC--CCCC---cccc-
Q 003044 169 FESQGGPIILSQIENEYGAQS---KLLG------AAGHNYMT-WAAKMAVEMGT--GVPWVMCKEE--DAPD---PVIN- 230 (854)
Q Consensus 169 ~~~~gGpII~~QiENEyg~~~---~~~~------~~~~~y~~-~l~~~~~~~g~--~vp~~~~~~~--~~~~---~vi~- 230 (854)
|=+|=++-+-||..... ..|. +..++|+. .|.-.+++.|+ ++-++..+.. ..|+ .++.
T Consensus 221 ----GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d 296 (496)
T PF02055_consen 221 ----GIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDNLPDYADTILND 296 (496)
T ss_dssp ----T--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGTTHHHHHHHTS
T ss_pred ----CCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcccchhhhhhhcC
Confidence 44999999999987421 1111 13466775 47888888877 7777666531 2221 1121
Q ss_pred -----CCC--Cccc---CcC-------CCCCCCCCeEEeeeCcccccccCCCC---CcCCHHHHHHHHHHHHHhCCeeee
Q 003044 231 -----SCN--GFYC---DAF-------TPNQPYKPTIWTEAWSGWFTEFGGPI---HQRPVQDLAFAAARFIQKGGSFIN 290 (854)
Q Consensus 231 -----~~n--g~~~---~~~-------~~~~p~~P~~~tE~~~Gwf~~wG~~~---~~~~~~~~~~~~~~~l~~g~s~~n 290 (854)
... +++| +.. ....|++.++.||-..|.- .|+... ....++..+..+..-+.++++ +
T Consensus 297 ~~A~~yv~GiA~HwY~g~~~~~~l~~~h~~~P~k~l~~TE~~~g~~-~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~--g 373 (496)
T PF02055_consen 297 PEAAKYVDGIAFHWYGGDPSPQALDQVHNKFPDKFLLFTEACCGSW-NWDTSVDLGSWDRAERYAHDIIGDLNNWVS--G 373 (496)
T ss_dssp HHHHTTEEEEEEEETTCS-HCHHHHHHHHHSTTSEEEEEEEESS-S-TTS-SS-TTHHHHHHHHHHHHHHHHHTTEE--E
T ss_pred hhhHhheeEEEEECCCCCchhhHHHHHHHHCCCcEEEeeccccCCC-CcccccccccHHHHHHHHHHHHHHHHhhce--e
Confidence 111 2233 111 1346899999999865431 122111 111234444444445666654 2
Q ss_pred eeEe------eccCCCCCC-CCCCcccccccCCCCCCCCCCCCchhHHHHHHHHHHHHhhhccccCCCCccccCCCccce
Q 003044 291 YYMY------HGGTNFGRS-AGGPFITTSYDYDAPIDEYGLIRQPKYGHLKELHRAIKMCERALVSADPIVTSLGGFQQA 363 (854)
Q Consensus 291 ~YM~------hGGTNfG~~-~G~~~~~tSYDY~Api~E~G~~~t~ky~~lr~l~~~i~~~~~~l~~~~p~~~~~~~~~~~ 363 (854)
+-++ .||-|++.. ..++..+.. +. +| -.++|.|+.|..+.+|++.-...+-.. ........+.
T Consensus 374 w~~WNl~LD~~GGP~~~~n~~d~~iivd~-~~----~~--~~~~p~yY~~gHfSKFV~PGa~RI~st---~~~~~~~l~~ 443 (496)
T PF02055_consen 374 WIDWNLALDENGGPNWVGNFCDAPIIVDS-DT----GE--FYKQPEYYAMGHFSKFVRPGAVRIGST---SSSSDSGLEA 443 (496)
T ss_dssp EEEEESEBETTS---TT---B--SEEEEG-GG----TE--EEE-HHHHHHHHHHTTS-TT-EEEEEE---ESSSTTTEEE
T ss_pred eeeeeeecCCCCCCcccCCCCCceeEEEc-CC----Ce--EEEcHHHHHHHHHhcccCCCCEEEEee---ccCCCCceeE
Confidence 2222 488887532 112221111 10 12 123789999998887776432222100 0001113445
Q ss_pred eeeccCCCceeeEeeecCCccc-eEEEec
Q 003044 364 HVYSSESGDCAAFLSNYDTKSA-ARVLFN 391 (854)
Q Consensus 364 ~~y~~~~~~~~~fl~n~~~~~~-~~v~~~ 391 (854)
..|...++..++-|.|...... .+|+++
T Consensus 444 vAF~nPDGs~vvVv~N~~~~~~~~~v~v~ 472 (496)
T PF02055_consen 444 VAFLNPDGSIVVVVLNRGDSDQNFSVTVK 472 (496)
T ss_dssp EEEEETTSEEEEEEEE-SSS-EEEEEEEE
T ss_pred EEEECCCCCEEEEEEcCCCCccceEEEEe
Confidence 5666666666665566443322 245554
No 49
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=93.55 E-value=0.38 Score=46.96 Aligned_cols=98 Identities=14% Similarity=0.179 Sum_probs=62.6
Q ss_pred HHHHHHHHCCCCEEEeccc----c-----CccCCCCCceeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCc
Q 003044 61 DLIQKAKDGGLDVIETYVF----W-----NVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPV 131 (854)
Q Consensus 61 ~~l~k~ka~G~N~V~~yv~----W-----n~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vilrpGPyi~aEw~~GGlP~ 131 (854)
+-++.+|++|+|+|.++.= | .+|.+.|+- ...-|.++++.|++.||.|++|...- --|+..---|.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L----~~Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPe 78 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL----KRDLLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC----CcCHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCc
Confidence 3467889999999998432 2 234444443 12256999999999999999997654 33333445699
Q ss_pred ccccCCCeE-------------eecCChhHHHHHHHHHHHHHHHH
Q 003044 132 WLKYVPGIS-------------FRTDNEPFKRAMQGFTEKIVNLM 163 (854)
Q Consensus 132 WL~~~p~~~-------------~Rt~d~~y~~~~~~~~~~l~~~l 163 (854)
|+..+++=+ .-..|.+|++.+.+-+++|+...
T Consensus 79 W~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 79 WFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred eeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 998643311 11235578876666665555433
No 50
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=92.82 E-value=0.16 Score=58.99 Aligned_cols=96 Identities=19% Similarity=0.339 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHCCCCEEEeccccCccCCCCC--ceeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccc
Q 003044 57 DMWEDLIQKAKDGGLDVIETYVFWNVHEPSPG--NYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLK 134 (854)
Q Consensus 57 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G--~ydf~g~~dl~~fl~la~~~gL~vilrpGPyi~aEw~~GGlP~WL~ 134 (854)
..++++++.||+||+|+.++-|.|...-|..+ +.+=.|-...+++++.|.++|+.-++--- =| -+|.||.
T Consensus 59 hrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~-----Hf---d~P~~L~ 130 (460)
T COG2723 59 HRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY-----HF---DLPLWLQ 130 (460)
T ss_pred hhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-----cc---CCcHHHh
Confidence 34789999999999999999999999999654 48888889999999999999999766531 13 3899999
Q ss_pred cC-CCeEeecCChhHHHHHHHHHHHHHHHHh
Q 003044 135 YV-PGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (854)
Q Consensus 135 ~~-p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 164 (854)
+. -|-. +..-.++-.+|.+.+++++.
T Consensus 131 ~~ygGW~----nR~~i~~F~~ya~~vf~~f~ 157 (460)
T COG2723 131 KPYGGWE----NRETVDAFARYAATVFERFG 157 (460)
T ss_pred hccCCcc----CHHHHHHHHHHHHHHHHHhc
Confidence 85 3432 23333444555555555554
No 51
>PRK09936 hypothetical protein; Provisional
Probab=92.60 E-value=0.44 Score=52.13 Aligned_cols=58 Identities=24% Similarity=0.402 Sum_probs=47.4
Q ss_pred CCCCHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeeccc-chHHHHHHHHHHcCCEEEEe
Q 003044 52 PRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGR-YDLVRFIKTIQKAGLYAHLR 115 (854)
Q Consensus 52 ~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~-~dl~~fl~la~~~gL~vilr 115 (854)
.+++++.|+.+++.+|+.|++|+ .|-|...-.. ||.+. -+|.+.++.|++.||.|++.
T Consensus 33 ~~~~~~qWq~~~~~~~~~G~~tL--ivQWt~yG~~----~fg~~~g~La~~l~~A~~~Gl~v~vG 91 (296)
T PRK09936 33 SQVTDTQWQGLWSQLRLQGFDTL--VVQWTRYGDA----DFGGQRGWLAKRLAAAQQAGLKLVVG 91 (296)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEE--EEEeeeccCC----CcccchHHHHHHHHHHHHcCCEEEEc
Confidence 46899999999999999999986 4566554111 88764 59999999999999999875
No 52
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=91.74 E-value=0.84 Score=50.90 Aligned_cols=116 Identities=17% Similarity=0.269 Sum_probs=70.8
Q ss_pred CHhHHHHHHHHHHHCCCCEEEeccc-------------cCccCC-CCCc-eeecccchHHHHHHHHHHcCCEEEEecCce
Q 003044 55 TPDMWEDLIQKAKDGGLDVIETYVF-------------WNVHEP-SPGN-YNFEGRYDLVRFIKTIQKAGLYAHLRIGPY 119 (854)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv~-------------Wn~hEp-~~G~-ydf~g~~dl~~fl~la~~~gL~vilrpGPy 119 (854)
.++.-+..|++++++|+|+|=.-|- |..--. .+|. -.|+ -|..+|+.|++.||.|..+. .+
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~D---pL~~~I~eaHkrGlevHAW~-~~ 92 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFD---PLEFMIEEAHKRGLEVHAWF-RV 92 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCcc---HHHHHHHHHHHcCCEEEEEE-Ee
Confidence 6788899999999999999975543 322111 1121 0133 79999999999999999775 11
Q ss_pred eeeecCC----CCCCcccc-cCCCeEeec----C-----ChhHHHHHHHHHHHHHHHH-hhcccccccCCceEEecccc
Q 003044 120 VCAEWNF----GGFPVWLK-YVPGISFRT----D-----NEPFKRAMQGFTEKIVNLM-KSENLFESQGGPIILSQIEN 183 (854)
Q Consensus 120 i~aEw~~----GGlP~WL~-~~p~~~~Rt----~-----d~~y~~~~~~~~~~l~~~l-~~~~~~~~~gGpII~~QiEN 183 (854)
-...... -..|.|+. +.++..... . || -..+|+.|+..++..| +++ +|=++|++-
T Consensus 93 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP-~~PeVr~~i~~~v~Eiv~~Y--------dvDGIhlDd 162 (311)
T PF02638_consen 93 GFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNP-GHPEVRDYIIDIVKEIVKNY--------DVDGIHLDD 162 (311)
T ss_pred ecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECC-CCHHHHHHHHHHHHHHHhcC--------CCCeEEecc
Confidence 1110011 12488876 356532322 1 22 2367888877777655 433 466788773
No 53
>smart00642 Aamy Alpha-amylase domain.
Probab=88.49 E-value=1.2 Score=45.09 Aligned_cols=68 Identities=13% Similarity=0.120 Sum_probs=46.1
Q ss_pred HhHHHHHHHHHHHCCCCEEEeccccCcc-------CCCCCce-----eecccchHHHHHHHHHHcCCEEEEecCceeeee
Q 003044 56 PDMWEDLIQKAKDGGLDVIETYVFWNVH-------EPSPGNY-----NFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAE 123 (854)
Q Consensus 56 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~h-------Ep~~G~y-----df~g~~dl~~fl~la~~~gL~vilrpGPyi~aE 123 (854)
-+-+.+.|..+|++|+|+|.+-=++... .-.+..| .|....++.++++.|+++||.||+..=|-=++.
T Consensus 18 ~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 18 LQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 3446677778999999999974332221 1122222 455567999999999999999999864443333
No 54
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=88.32 E-value=5.4 Score=43.24 Aligned_cols=131 Identities=16% Similarity=0.217 Sum_probs=75.4
Q ss_pred HhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCEEE-EecCceeeeecCCCCCCcccc
Q 003044 56 PDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAH-LRIGPYVCAEWNFGGFPVWLK 134 (854)
Q Consensus 56 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vi-lrpGPyi~aEw~~GGlP~WL~ 134 (854)
...|++.|+.++++|++.|++-+ +.. ...++..+++ ..++.++.++++++||.|. +.+++. +.+|
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~-~~~-~~~~~~~~~~-~~~~~~~~~~l~~~gl~i~~~~~~~~-------~~~~---- 80 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSV-DET-DDRLSRLDWS-REQRLALVNAIIETGVRIPSMCLSAH-------RRFP---- 80 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEec-CCc-cchhhccCCC-HHHHHHHHHHHHHcCCCceeeecCCC-------ccCc----
Confidence 45699999999999999999943 222 2223344554 3478899999999999875 443310 1111
Q ss_pred cCCCeEeecCChhHHHHHHHHHHHHHHHHhhcccccccCCceEEecccccccccccccCc---ccHHHHHHHHHHHHHcC
Q 003044 135 YVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLLGA---AGHNYMTWAAKMAVEMG 211 (854)
Q Consensus 135 ~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~---~~~~y~~~l~~~~~~~g 211 (854)
+-..|+.-+++....+++.++..+ .+ |.++|.+-- .++.. .....+ .-.+.++.+.+.+++.|
T Consensus 81 ------l~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~~-~~~~~-~~~~~~~~~~~~~~l~~l~~~A~~~G 146 (279)
T TIGR00542 81 ------LGSKDKAVRQQGLEIMEKAIQLAR--DL----GIRTIQLAG-YDVYY-EEHDEETRRRFREGLKEAVELAARAQ 146 (279)
T ss_pred ------CCCcCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEecC-ccccc-CcCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 122345556666667777777666 32 556665421 11100 000000 11245566667777778
Q ss_pred CCc
Q 003044 212 TGV 214 (854)
Q Consensus 212 ~~v 214 (854)
+.+
T Consensus 147 v~l 149 (279)
T TIGR00542 147 VTL 149 (279)
T ss_pred CEE
Confidence 765
No 55
>PF11875 DUF3395: Domain of unknown function (DUF3395); InterPro: IPR024586 Chaperone DnaJ was originally characterised from Escherichia coli as a 41 kDa heat shock protein. DnaJ has a modular structure consisting of a J-domain, a proximal G/F-domain, and a distal zinc finger domain, followed by less conserved C-terminal sequences. Since then, a large number of DnaJ-related proteins containing a J-domain have been characterised from a variety of different organisms. In the genome of Arabidopsis thaliana a total of 89 J-domain proteins have been identified []. This entry represents a C-terminal domain found in some eukaryotic DnaJ-like proteins, including member 11 from the subfamily C1 and protein DnaJ 13 from Arabidopsis. This domain is typically between 147 to 176 amino acids in length.
Probab=87.76 E-value=0.65 Score=46.44 Aligned_cols=71 Identities=18% Similarity=0.088 Sum_probs=40.2
Q ss_pred EeeeccCCCCC--CCCCCC-----CCCccCCChhhhHhhhcCCCCce-eEEec---CCCccC-CCCC--CCcceEEEEEE
Q 003044 774 IKFASFGTPLG--TCGSYQ-----QGPCHSPTSYDILEKKCVGKQRC-AVTIS---NSNFGV-DPCP--NVLKRLSVEAI 839 (854)
Q Consensus 774 I~~A~YGR~~~--~C~~~~-----~~~C~~~~s~~~V~~~C~Gk~~C-~i~a~---~~~Fg~-DPCp--gt~KYL~V~Y~ 839 (854)
|..|.||.... .+.... ...+..-+++-.+.... +.++ .|+.. ..+.|. |||| |..|.|.|.|.
T Consensus 55 I~~A~YG~~~~~~~~~~~~~~~~~~~~~~~iDVTipLq~lV--~dS~L~l~~~~sKs~L~GF~DP~p~~ge~K~L~V~Y~ 132 (151)
T PF11875_consen 55 ILKAWYGNLPAKSDESNNDEPEDPDLDPPVIDVTIPLQALV--KDSQLILPEGVSKSGLPGFYDPCPFLGEPKQLRVRYR 132 (151)
T ss_pred EEEEEcCCcccccccccccccccccccCcEEEEhhhhhhEe--ecCEEEEcCCCchhhCCCCCCCccccCCccEEEEEEE
Confidence 89999999753 332211 11222334444444333 3344 33331 123333 9999 88999999999
Q ss_pred eeCCCCc
Q 003044 840 CSPTTST 846 (854)
Q Consensus 840 C~~~~~~ 846 (854)
.....+.
T Consensus 133 f~g~~h~ 139 (151)
T PF11875_consen 133 FRGKLHE 139 (151)
T ss_pred ECCEEEE
Confidence 8765544
No 56
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=87.57 E-value=1.9 Score=50.70 Aligned_cols=150 Identities=15% Similarity=0.236 Sum_probs=96.7
Q ss_pred cCcEEECCEEeEEEEEEeeCC-----CCCHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHH
Q 003044 32 RKALLINGQRRILFSGSIHYP-----RSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQ 106 (854)
Q Consensus 32 ~~~~~idG~~~~~~sg~~Hy~-----r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~ 106 (854)
+..|.|++.|.++.++.--+. |..-+.-+-.|+-++++|+|++++ |.. |...-+.|-++|.
T Consensus 327 nfyfkin~~pvflkg~nwip~s~f~dr~t~~~~~~LL~Sv~e~~MN~lRV---WGG-----------GvYEsd~FY~lad 392 (867)
T KOG2230|consen 327 NFYFKINDEPVFLKGTNWIPVSMFRDRENIAKTEFLLDSVAEVGMNMLRV---WGG-----------GVYESDYFYQLAD 392 (867)
T ss_pred eeEEEEcCcEEEeecCCccChHHHHhhHHHHHHHHHHHHHHHhCcceEEE---ecC-----------ccccchhHHHHhh
Confidence 356889999999988876542 234555666799999999999998 543 2334789999999
Q ss_pred HcCCEEEEecCceeeeecCCCCCCcccccCCCeEeecCChhHHHHHHHHHHHHHHHHhhcccccccCCceEEecc--ccc
Q 003044 107 KAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQI--ENE 184 (854)
Q Consensus 107 ~~gL~vilrpGPyi~aEw~~GGlP~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi--ENE 184 (854)
+.||.|--.. =+.||- =..|..|++.|+.=++.=+.+|+.|| .||.+-= |||
T Consensus 393 ~lGilVWQD~-MFACAl------------------YPt~~eFl~sv~eEV~yn~~Rls~Hp-------SviIfsgNNENE 446 (867)
T KOG2230|consen 393 SLGILVWQDM-MFACAL------------------YPTNDEFLSSVREEVRYNAMRLSHHP-------SVIIFSGNNENE 446 (867)
T ss_pred hccceehhhh-HHHhhc------------------ccCcHHHHHHHHHHHHHHHHhhccCC-------eEEEEeCCCccH
Confidence 9999775331 123332 23467899999887777777787665 6776654 455
Q ss_pred ccccccccCc-------ccHHHHH----HHHHHHHHcCCCcceeecCC
Q 003044 185 YGAQSKLLGA-------AGHNYMT----WAAKMAVEMGTGVPWVMCKE 221 (854)
Q Consensus 185 yg~~~~~~~~-------~~~~y~~----~l~~~~~~~g~~vp~~~~~~ 221 (854)
=.-....|+. .-++|.- -++++...-.-..|+++...
T Consensus 447 aAl~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPfi~SSP 494 (867)
T KOG2230|consen 447 AALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPFIVSSP 494 (867)
T ss_pred HHHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCceecCC
Confidence 3211111321 1234443 34455544455678887654
No 57
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=87.40 E-value=6.2 Score=48.16 Aligned_cols=57 Identities=21% Similarity=0.216 Sum_probs=40.1
Q ss_pred HHHH-HHHHHCCCCEEEe-ccccCccCC----CCC-----ceeecccchHHHHHHHHHHcCCEEEEec
Q 003044 60 EDLI-QKAKDGGLDVIET-YVFWNVHEP----SPG-----NYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (854)
Q Consensus 60 ~~~l-~k~ka~G~N~V~~-yv~Wn~hEp----~~G-----~ydf~g~~dl~~fl~la~~~gL~vilrp 116 (854)
.++| .-+|++|+|+|+. .|+..-... .+- .-.|.+..+|.+|++.|+++||.|||..
T Consensus 159 ~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~ 226 (613)
T TIGR01515 159 ADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDW 226 (613)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3454 7779999999998 676432111 000 1134556799999999999999999984
No 58
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=86.22 E-value=5.8 Score=42.86 Aligned_cols=131 Identities=17% Similarity=0.235 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCEEE-EecCceeeeecCCCCCCccccc
Q 003044 57 DMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAH-LRIGPYVCAEWNFGGFPVWLKY 135 (854)
Q Consensus 57 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vi-lrpGPyi~aEw~~GGlP~WL~~ 135 (854)
-.|++.++.++++|+..|++.+. ..|+. ....+|+ ..++.++.++++++||.|. +.++. .-.+
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~~-~~~~~~~-~~~~~~l~~~l~~~Gl~i~~~~~~~----------~~~~--- 79 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD-ESDER-LARLDWS-KEERLSLVKAIYETGVRIPSMCLSG----------HRRF--- 79 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-Ccccc-cccccCC-HHHHHHHHHHHHHcCCCceEEeccc----------ccCc---
Confidence 35999999999999999999532 22220 1122333 3478999999999999875 33221 1000
Q ss_pred CCCeEeecCChhHHHHHHHHHHHHHHHHhhcccccccCCceEEecccccccccc--cccCcccHHHHHHHHHHHHHcCCC
Q 003044 136 VPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQS--KLLGAAGHNYMTWAAKMAVEMGTG 213 (854)
Q Consensus 136 ~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~--~~~~~~~~~y~~~l~~~~~~~g~~ 213 (854)
.+.+.|+.-+++..+.++++++.-+ .+ |.++|.+---..+.... ..+ ..-.+.++.+.+++++.|+.
T Consensus 80 ----~~~~~d~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~ 148 (284)
T PRK13210 80 ----PFGSRDPATRERALEIMKKAIRLAQ--DL----GIRTIQLAGYDVYYEEKSEETR-QRFIEGLAWAVEQAAAAQVM 148 (284)
T ss_pred ----CCCCCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEECCcccccccccHHHH-HHHHHHHHHHHHHHHHhCCE
Confidence 1223456555555666666666665 22 44555442100000000 000 01235677788888888876
Q ss_pred c
Q 003044 214 V 214 (854)
Q Consensus 214 v 214 (854)
+
T Consensus 149 l 149 (284)
T PRK13210 149 L 149 (284)
T ss_pred E
Confidence 5
No 59
>PRK14706 glycogen branching enzyme; Provisional
Probab=84.27 E-value=13 Score=45.79 Aligned_cols=53 Identities=13% Similarity=0.176 Sum_probs=35.9
Q ss_pred HHHHHCCCCEEEe-ccc-------cCccCCC--CCceeecccchHHHHHHHHHHcCCEEEEec
Q 003044 64 QKAKDGGLDVIET-YVF-------WNVHEPS--PGNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (854)
Q Consensus 64 ~k~ka~G~N~V~~-yv~-------Wn~hEp~--~G~ydf~g~~dl~~fl~la~~~gL~vilrp 116 (854)
.-+|++|+|+|+. .|. |.+.-.- .=.=.|....++.+|++.|+++||.|||..
T Consensus 175 ~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 175 EYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred HHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 5689999999995 332 3321000 000123445799999999999999999884
No 60
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.48 E-value=8.1 Score=44.76 Aligned_cols=123 Identities=21% Similarity=0.301 Sum_probs=80.6
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEecc-------------ccCccCCCCCceee-cccchHHHHHHHHHHcCCEEEEecCce
Q 003044 54 STPDMWEDLIQKAKDGGLDVIETYV-------------FWNVHEPSPGNYNF-EGRYDLVRFIKTIQKAGLYAHLRIGPY 119 (854)
Q Consensus 54 ~~~~~W~~~l~k~ka~G~N~V~~yv-------------~Wn~hEp~~G~ydf-~g~~dl~~fl~la~~~gL~vilrpGPy 119 (854)
..+..-.+.|.+++++|+|||-.-| +|..-- ||.+-= .|..-|...|++|++.||.|+.+.=||
T Consensus 61 ~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~--~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~ 138 (418)
T COG1649 61 FQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL--PGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPY 138 (418)
T ss_pred ccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCc--CcccCCCCCCChHHHHHHHHHhcCCeeeechhhc
Confidence 3788889999999999999997433 354432 343211 233478888999999999999998777
Q ss_pred eeeecCCCC---CCcccccC-CCeE-eecCC-------hhHHHHHHHHHHHHH-HHHhhcccccccCCceEEeccccccc
Q 003044 120 VCAEWNFGG---FPVWLKYV-PGIS-FRTDN-------EPFKRAMQGFTEKIV-NLMKSENLFESQGGPIILSQIENEYG 186 (854)
Q Consensus 120 i~aEw~~GG---lP~WL~~~-p~~~-~Rt~d-------~~y~~~~~~~~~~l~-~~l~~~~~~~~~gGpII~~QiENEyg 186 (854)
.-|--..-. -|.|+..+ |+.. .|... .+...+|+.|+..++ ++++++ .|=++|.+-=++
T Consensus 139 ~~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~Y--------dvDGIQfDd~fy 210 (418)
T COG1649 139 RMAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNY--------DVDGIQFDDYFY 210 (418)
T ss_pred ccCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCC--------CCCceecceeec
Confidence 754322111 37777754 5433 33332 135577888887776 566643 566788776555
No 61
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=83.33 E-value=2.3 Score=48.43 Aligned_cols=71 Identities=23% Similarity=0.234 Sum_probs=47.0
Q ss_pred EEEEeeCCCCCHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCEEEEecCceee
Q 003044 45 FSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVC 121 (854)
Q Consensus 45 ~sg~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vilrpGPyi~ 121 (854)
++=++++...+.+..+..|++|+++|+..|=| ++|.|+...=+. ...+..++++|+++||.|++...|=+.
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~iFT----SL~ipe~~~~~~--~~~~~~l~~~a~~~~~~v~~Disp~~l 72 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKRIFT----SLHIPEDDPEDY--LERLKELLKLAKELGMEVIADISPKVL 72 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEEEEE----EE---------H--HHHHHHHHHHHHHCT-EEEEEE-CCHH
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEC----CCCcCCCCHHHH--HHHHHHHHHHHHHCCCEEEEECCHHHH
Confidence 45567777778999999999999999976655 789998543221 137899999999999999999876543
No 62
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=83.29 E-value=3.1 Score=49.26 Aligned_cols=125 Identities=18% Similarity=0.189 Sum_probs=65.0
Q ss_pred EEeeCCCCCHhHHHHHHHHHH-HCCCCEEEec-cc---cCcc-C-CCCC--ceeecccchHHHHHHHHHHcCCEEEEecC
Q 003044 47 GSIHYPRSTPDMWEDLIQKAK-DGGLDVIETY-VF---WNVH-E-PSPG--NYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (854)
Q Consensus 47 g~~Hy~r~~~~~W~~~l~k~k-a~G~N~V~~y-v~---Wn~h-E-p~~G--~ydf~g~~dl~~fl~la~~~gL~vilrpG 117 (854)
|.-|....-++.|+..|+.++ +.||..|++. +| .... | ..+| .|||+ .|+.++|...+.||+-.+..|
T Consensus 29 ~~g~a~~~l~~~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~---~lD~i~D~l~~~g~~P~vel~ 105 (486)
T PF01229_consen 29 GSGRANLLLRADWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFT---YLDQILDFLLENGLKPFVELG 105 (486)
T ss_dssp EES-GGGGGBHHHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--H---HHHHHHHHHHHCT-EEEEEE-
T ss_pred CCCchHHHhhHHHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCChH---HHHHHHHHHHHcCCEEEEEEE
Confidence 444444456788999999997 5899999873 22 1111 1 1233 39999 899999999999999877755
Q ss_pred ceeeeecCCCCCCcccccCCCeEeec----CChhHHHHHHHHHHHHHHHHhhc-ccccccCCceEEecccccccc
Q 003044 118 PYVCAEWNFGGFPVWLKYVPGISFRT----DNEPFKRAMQGFTEKIVNLMKSE-NLFESQGGPIILSQIENEYGA 187 (854)
Q Consensus 118 Pyi~aEw~~GGlP~WL~~~p~~~~Rt----~d~~y~~~~~~~~~~l~~~l~~~-~~~~~~gGpII~~QiENEyg~ 187 (854)
- .|.++...+...+.- .-|.-.++...+++++++++.++ ....-.. =.+.|=||...
T Consensus 106 f----------~p~~~~~~~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~---W~fEiWNEPd~ 167 (486)
T PF01229_consen 106 F----------MPMALASGYQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVST---WYFEIWNEPDL 167 (486)
T ss_dssp S----------B-GGGBSS--EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTT---SEEEESS-TTS
T ss_pred e----------chhhhcCCCCccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccc---eeEEeCcCCCc
Confidence 2 455554432221111 12333455666666666665421 1100011 14577898764
No 63
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=82.02 E-value=1.2 Score=51.63 Aligned_cols=157 Identities=15% Similarity=0.176 Sum_probs=103.3
Q ss_pred cEEECCEEeEEEEEEeeCCCCCHhHHHHHHHHHHHCCCCEEEeccccCcc-CC---CCCceee-cccchHHHHHHHHHHc
Q 003044 34 ALLINGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVH-EP---SPGNYNF-EGRYDLVRFIKTIQKA 108 (854)
Q Consensus 34 ~~~idG~~~~~~sg~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~h-Ep---~~G~ydf-~g~~dl~~fl~la~~~ 108 (854)
.|.++++++..++..--++++-.++-+++|+-|+.+|+++++.. .+- |+ ++|.-+- ++..-++.|++.|.++
T Consensus 3 ~F~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~f---iLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l 79 (587)
T COG3934 3 VFALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLF---ILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYL 79 (587)
T ss_pred eEEeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEEE---EecCcchhhhhceecccccHHHHHHHhhhcccC
Confidence 47888888887777777777777778889999999999999985 344 55 2333222 2345789999999999
Q ss_pred CCEEEEecCceeeeecCCCCCC---cccc-cCCCeEeecCChhHHHHHHHHHHHHHHHHhhcccccccCCceEEeccccc
Q 003044 109 GLYAHLRIGPYVCAEWNFGGFP---VWLK-YVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENE 184 (854)
Q Consensus 109 gL~vilrpGPyi~aEw~~GGlP---~WL~-~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENE 184 (854)
+|+|+++. |.+==.+||.= .|.- +.|+=. -.|+.++..-++|+..+++-.+ ....|.+|-+-||
T Consensus 80 ~lkvlitl---ivg~~hmgg~Nw~Ipwag~~~pdn~--iyD~k~~~~~kkyvedlVk~yk-------~~ptI~gw~l~Ne 147 (587)
T COG3934 80 DLKVLITL---IVGLKHMGGTNWRIPWAGEQSPDNV--IYDPKFRGPGKKYVEDLVKPYK-------LDPTIAGWALRNE 147 (587)
T ss_pred cceEEEEE---eecccccCcceeEeecCCCCCcccc--ccchhhcccHHHHHHHHhhhhc-------cChHHHHHHhcCC
Confidence 99998773 33322344432 2331 122211 1245555556777777766554 3448888999999
Q ss_pred ccccccccCcccHHHHHHHHHHHH
Q 003044 185 YGAQSKLLGAAGHNYMTWAAKMAV 208 (854)
Q Consensus 185 yg~~~~~~~~~~~~y~~~l~~~~~ 208 (854)
.-.. -...+..+++|+++|+.
T Consensus 148 ~lv~---~p~s~N~f~~w~~emy~ 168 (587)
T COG3934 148 PLVE---APISVNNFWDWSGEMYA 168 (587)
T ss_pred cccc---ccCChhHHHHHHHHHHH
Confidence 3221 12356789999999973
No 64
>PRK05402 glycogen branching enzyme; Provisional
Probab=81.71 E-value=15 Score=45.94 Aligned_cols=54 Identities=20% Similarity=0.220 Sum_probs=37.3
Q ss_pred HHHHHHCCCCEEEe-ccccC----ccCCCCCc-----eeecccchHHHHHHHHHHcCCEEEEec
Q 003044 63 IQKAKDGGLDVIET-YVFWN----VHEPSPGN-----YNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (854)
Q Consensus 63 l~k~ka~G~N~V~~-yv~Wn----~hEp~~G~-----ydf~g~~dl~~fl~la~~~gL~vilrp 116 (854)
|.-+|++|+|+|.. .|+=. -|-..+.. =.|.+..+|.+|++.|+++||.|||..
T Consensus 272 ~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 272 IPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 36779999999996 45410 01111111 124456799999999999999999984
No 65
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=81.68 E-value=1.1e+02 Score=35.41 Aligned_cols=250 Identities=14% Similarity=0.144 Sum_probs=127.7
Q ss_pred eeCCCCCHhHHHHHHHHHHHCCCCEEEe-------ccccCccCCCCCceeecccc-hHHHHHHHHHHcCCEEEEecCcee
Q 003044 49 IHYPRSTPDMWEDLIQKAKDGGLDVIET-------YVFWNVHEPSPGNYNFEGRY-DLVRFIKTIQKAGLYAHLRIGPYV 120 (854)
Q Consensus 49 ~Hy~r~~~~~W~~~l~k~ka~G~N~V~~-------yv~Wn~hEp~~G~ydf~g~~-dl~~fl~la~~~gL~vilrpGPyi 120 (854)
+.+.+..++.|. +.+|++|+..|-. +-.|.-....-..-+-.-.+ -|.+|.+.|+++||++-+=-.+
T Consensus 76 F~p~~fD~~~Wa---~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~-- 150 (384)
T smart00812 76 FTAEKFDPEEWA---DLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL-- 150 (384)
T ss_pred CCchhCCHHHHH---HHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCH--
Confidence 334456777775 5778888885542 12354433211111111123 4567889999999977663222
Q ss_pred eeecCCCCCCcccccCCCeEeecCChhHHHHHHHHHHHHHHHHhhcccccccCCceEEecccccccccccccCcccHHHH
Q 003044 121 CAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLLGAAGHNYM 200 (854)
Q Consensus 121 ~aEw~~GGlP~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~ 200 (854)
-+|.. |.|....+.-..+.+.+.|.+.++.|+.+|.+.+.++ ||-++|- +-..+.. ...--+
T Consensus 151 -~DW~~---p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Y-------gpd~lWf-D~~~~~~------~~~~~~ 212 (384)
T smart00812 151 -FDWFN---PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRY-------KPDLLWF-DGGWEAP------DDYWRS 212 (384)
T ss_pred -HHhCC---CccccccccccccccchhHHHHHHHHHHHHHHHHhcC-------CCceEEE-eCCCCCc------cchhcH
Confidence 36654 5443321111123456778888888888888888733 2444442 1111110 011113
Q ss_pred HHHHHHHHHcCCCc--ceeecCCCCCCCccccCCCCcc--c-CcCCCC-CCCCCeE-EeeeCcccccccCC-CCCcCCHH
Q 003044 201 TWAAKMAVEMGTGV--PWVMCKEEDAPDPVINSCNGFY--C-DAFTPN-QPYKPTI-WTEAWSGWFTEFGG-PIHQRPVQ 272 (854)
Q Consensus 201 ~~l~~~~~~~g~~v--p~~~~~~~~~~~~vi~~~ng~~--~-~~~~~~-~p~~P~~-~tE~~~Gwf~~wG~-~~~~~~~~ 272 (854)
+.|.+++++..-++ .++ ++... ..... .|.. + +...+. ....|.- ++=.-.+|+=+-+. ....++++
T Consensus 213 ~~l~~~~~~~qP~~~~vvv-n~R~~---~~~~~-~g~~~~~~e~~~p~~~~~~pwE~~~ti~~sWgy~~~~~~~~~ks~~ 287 (384)
T smart00812 213 KEFLAWLYNLSPVKDTVVV-NDRWG---GTGCK-HGGFYTDEERGAPGKLLPHPWETCTTIGKSWGYRRNESDSDYKSPK 287 (384)
T ss_pred HHHHHHHHHhCCCCceEEE-Ecccc---ccCCC-CCCcccCcccCCCCCCCCCCcccccccCCCCCcCCCCCcccCCCHH
Confidence 45667777655443 222 22210 00000 0111 1 111110 0111210 01011244433333 23357899
Q ss_pred HHHHHHHHHHHhCCee-eeeeEeeccCCCCCCCCCCcccccccCCCCCCCCCCCCchhHHHHHHHHHHHHhhhccccCCC
Q 003044 273 DLAFAAARFIQKGGSF-INYYMYHGGTNFGRSAGGPFITTSYDYDAPIDEYGLIRQPKYGHLKELHRAIKMCERALVSAD 351 (854)
Q Consensus 273 ~~~~~~~~~l~~g~s~-~n~YM~hGGTNfG~~~G~~~~~tSYDY~Api~E~G~~~t~ky~~lr~l~~~i~~~~~~l~~~~ 351 (854)
++...+.+..++|+++ +|. +-+.+|.+-...-..|+++...++...+++-.+.
T Consensus 288 ~li~~l~~~Vsk~GnlLLNV--------------------------gP~~dG~ip~~~~~~L~~iG~Wl~~ngeaIy~tr 341 (384)
T smart00812 288 ELIRDLVDIVSKGGNLLLNV--------------------------GPKADGTIPEEEEERLLEIGKWLKVNGEAIYGTR 341 (384)
T ss_pred HHHHHHhhhcCCCceEEEcc--------------------------CCCCCCCCCHHHHHHHHHHHHHHHhCCceeecCC
Confidence 9999999999999885 232 2346777766667789999999987776665544
Q ss_pred C
Q 003044 352 P 352 (854)
Q Consensus 352 p 352 (854)
|
T Consensus 342 ~ 342 (384)
T smart00812 342 P 342 (384)
T ss_pred C
Confidence 3
No 66
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=81.67 E-value=2.2 Score=50.37 Aligned_cols=61 Identities=8% Similarity=0.266 Sum_probs=43.2
Q ss_pred HhHHH---HHHHHHHHCCCCEEEe-ccccCc-----cCCCCCc-e-------------eecccchHHHHHHHHHHcCCEE
Q 003044 56 PDMWE---DLIQKAKDGGLDVIET-YVFWNV-----HEPSPGN-Y-------------NFEGRYDLVRFIKTIQKAGLYA 112 (854)
Q Consensus 56 ~~~W~---~~l~k~ka~G~N~V~~-yv~Wn~-----hEp~~G~-y-------------df~g~~dl~~fl~la~~~gL~v 112 (854)
.+.|. +.|.-+|++|+++|-+ .++-+. |--.+-- | .|....||.++++.|++.||+|
T Consensus 18 ~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~v 97 (479)
T PRK09441 18 GKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKV 97 (479)
T ss_pred ccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEE
Confidence 35575 5677789999999987 455432 3322211 2 2335679999999999999999
Q ss_pred EEec
Q 003044 113 HLRI 116 (854)
Q Consensus 113 ilrp 116 (854)
|+..
T Consensus 98 i~D~ 101 (479)
T PRK09441 98 YADV 101 (479)
T ss_pred EEEE
Confidence 9985
No 67
>PRK01060 endonuclease IV; Provisional
Probab=80.86 E-value=29 Score=37.44 Aligned_cols=93 Identities=14% Similarity=0.213 Sum_probs=60.0
Q ss_pred HHHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCEE---EEecCceeeeecCCCCCCccccc
Q 003044 59 WEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYA---HLRIGPYVCAEWNFGGFPVWLKY 135 (854)
Q Consensus 59 W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~v---ilrpGPyi~aEw~~GGlP~WL~~ 135 (854)
+++.++.++++|++.|+..+.- -+.-..+.++- .++.++-++++++||.+ .+ -+||.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~-p~~~~~~~~~~---~~~~~lk~~~~~~gl~~~~~~~-h~~~~--------------- 73 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGN-PQQWKRKPLEE---LNIEAFKAACEKYGISPEDILV-HAPYL--------------- 73 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCC-CCCCcCCCCCH---HHHHHHHHHHHHcCCCCCceEE-ecceE---------------
Confidence 8899999999999999986431 12212222222 26888999999999973 22 23441
Q ss_pred CCCeEeecCChhHHHHHHHHHHHHHHHHhhcccccccCCceEEec
Q 003044 136 VPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQ 180 (854)
Q Consensus 136 ~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 180 (854)
+.+-+.|+..+++..+.+++.++.-+ .+ |.++|.+.
T Consensus 74 ---~nl~~~d~~~r~~s~~~~~~~i~~A~--~l----ga~~vv~h 109 (281)
T PRK01060 74 ---INLGNPNKEILEKSRDFLIQEIERCA--AL----GAKLLVFH 109 (281)
T ss_pred ---ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 12334567777777777777777766 33 44555553
No 68
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=80.47 E-value=3.3 Score=41.93 Aligned_cols=126 Identities=15% Similarity=0.131 Sum_probs=72.9
Q ss_pred HHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCeEee
Q 003044 63 IQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFR 142 (854)
Q Consensus 63 l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vilrpGPyi~aEw~~GGlP~WL~~~p~~~~R 142 (854)
|+.++++|+..|+............ ...++++.++++++||.+..--.+.. +. . +....+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~~~---~~---~-------~~~~~~ 60 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPPTN---FW---S-------PDEENG 60 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEEES---SS---C-------TGTTST
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEecccc---cc---c-------cccccc
Confidence 6789999999999866533322111 23799999999999999653321110 10 0 100123
Q ss_pred cCChhHHHHHHHHHHHHHHHHhhcccccccCCceEEeccc--ccccccc--cccCcccHHHHHHHHHHHHHcCCCcce
Q 003044 143 TDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIE--NEYGAQS--KLLGAAGHNYMTWAAKMAVEMGTGVPW 216 (854)
Q Consensus 143 t~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiE--NEyg~~~--~~~~~~~~~y~~~l~~~~~~~g~~vp~ 216 (854)
+.+++ ++...+.+.+.++..+ .+ |.+.|.+..- +...... ..+ ..-.+.++.|.+.+++.|+.+-+
T Consensus 61 ~~~~~-r~~~~~~~~~~i~~a~--~l----g~~~i~~~~g~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~i~l 130 (213)
T PF01261_consen 61 SANDE-REEALEYLKKAIDLAK--RL----GAKYIVVHSGRYPSGPEDDTEENW-ERLAENLRELAEIAEEYGVRIAL 130 (213)
T ss_dssp TSSSH-HHHHHHHHHHHHHHHH--HH----TBSEEEEECTTESSSTTSSHHHHH-HHHHHHHHHHHHHHHHHTSEEEE
T ss_pred Ccchh-hHHHHHHHHHHHHHHH--Hh----CCCceeecCcccccccCCCHHHHH-HHHHHHHHHHHhhhhhhcceEEE
Confidence 34444 7777777888787777 33 5667776643 1111110 000 12345667777888888876533
No 69
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=80.09 E-value=6.5 Score=44.04 Aligned_cols=112 Identities=16% Similarity=0.306 Sum_probs=69.7
Q ss_pred CHhHHHHHHHHHHHCCCCEEEec-------cccCccCCCCCceeec-c-cchHHHHHHHHHHcCCEEEEecCceeeeecC
Q 003044 55 TPDMWEDLIQKAKDGGLDVIETY-------VFWNVHEPSPGNYNFE-G-RYDLVRFIKTIQKAGLYAHLRIGPYVCAEWN 125 (854)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~y-------v~Wn~hEp~~G~ydf~-g-~~dl~~fl~la~~~gL~vilrpGPyi~aEw~ 125 (854)
.++.-+..|+.+++.|+|+|-+= |.+..-.|..-+..-. . ..|+.++++.++++|+++|.|.=-+--..-
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~l- 89 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFKDPVL- 89 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEecChHH-
Confidence 45678889999999999998742 3454333332222111 1 269999999999999999999622110000
Q ss_pred CCCCCcccccC-CCeEeecCC-----hhHHHHHHHHHHHHHHHHhhcc
Q 003044 126 FGGFPVWLKYV-PGISFRTDN-----EPFKRAMQGFTEKIVNLMKSEN 167 (854)
Q Consensus 126 ~GGlP~WL~~~-p~~~~Rt~d-----~~y~~~~~~~~~~l~~~l~~~~ 167 (854)
..--|.|-.+. .+-..|..+ .+|.+++.+|.-.|++.++..+
T Consensus 90 a~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~G 137 (316)
T PF13200_consen 90 AEAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKLG 137 (316)
T ss_pred hhhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHcC
Confidence 00145555532 121122111 2588999999999999988544
No 70
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=78.21 E-value=16 Score=39.58 Aligned_cols=125 Identities=15% Similarity=0.287 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCEEE-EecCceeeeecCCCCCCcccccC
Q 003044 58 MWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAH-LRIGPYVCAEWNFGGFPVWLKYV 136 (854)
Q Consensus 58 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vi-lrpGPyi~aEw~~GGlP~WL~~~ 136 (854)
.|++.++.++++|+..|+..+. ..++ ....++++ ..++.++.++++++||.|. +.++.. ..++
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~gl~i~~~~~~~~-------~~~~------ 85 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWS-REQRLALVNALVETGFRVNSMCLSAH-------RRFP------ 85 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCC-HHHHHHHHHHHHHcCCceeEEecccc-------cccC------
Confidence 4999999999999999998532 1111 01112332 2368899999999999875 332211 0010
Q ss_pred CCeEeecCChhHHHHHHHHHHHHHHHHhhcccccccCCceEEecccccccccccccCc-------ccHHHHHHHHHHHHH
Q 003044 137 PGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLLGA-------AGHNYMTWAAKMAVE 209 (854)
Q Consensus 137 p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~-------~~~~y~~~l~~~~~~ 209 (854)
+-+.|+.-++.....+++.++..+ .+ |.++|.+. +.. ..++. .-.+.++.|.+++++
T Consensus 86 ----~~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~i~~~-----~~~-~~~~~~~~~~~~~~~~~l~~l~~~A~~ 149 (283)
T PRK13209 86 ----LGSEDDAVRAQALEIMRKAIQLAQ--DL----GIRVIQLA-----GYD-VYYEQANNETRRRFIDGLKESVELASR 149 (283)
T ss_pred ----CCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEC-----Ccc-ccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 112355556666666777676666 33 56666542 110 00111 113456777778888
Q ss_pred cCCCc
Q 003044 210 MGTGV 214 (854)
Q Consensus 210 ~g~~v 214 (854)
.|+.+
T Consensus 150 ~GV~i 154 (283)
T PRK13209 150 ASVTL 154 (283)
T ss_pred hCCEE
Confidence 88765
No 71
>PRK12568 glycogen branching enzyme; Provisional
Probab=78.03 E-value=38 Score=42.24 Aligned_cols=55 Identities=22% Similarity=0.343 Sum_probs=39.3
Q ss_pred HHHHHHHCCCCEEEe-ccc-------cCccCCCCCce----eecccchHHHHHHHHHHcCCEEEEecCc
Q 003044 62 LIQKAKDGGLDVIET-YVF-------WNVHEPSPGNY----NFEGRYDLVRFIKTIQKAGLYAHLRIGP 118 (854)
Q Consensus 62 ~l~k~ka~G~N~V~~-yv~-------Wn~hEp~~G~y----df~g~~dl~~fl~la~~~gL~vilrpGP 118 (854)
.|.-+|++|+|+|+. .|+ |.+-- -|-| .|....++.+|++.|+++||.|||..=|
T Consensus 275 ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~--~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 275 LIPYVQQLGFTHIELLPITEHPFGGSWGYQP--LGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHcCCCEEEECccccCCCCCCCCCCC--CcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 467789999999996 443 43210 0111 3455679999999999999999998543
No 72
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=77.49 E-value=19 Score=39.01 Aligned_cols=54 Identities=13% Similarity=0.085 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHc-CCEEEE
Q 003044 57 DMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKA-GLYAHL 114 (854)
Q Consensus 57 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~-gL~vil 114 (854)
..|++.|+.+|++|++.|++-+........+ .....++.++.++++++ ++.+.+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~i~~ 64 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSR----PLKKERAEKFKAIAEEGPSICLSV 64 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCC----CCCHHHHHHHHHHHHHcCCCcEEE
Confidence 6699999999999999999866432111111 11345899999999999 666554
No 73
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=76.90 E-value=2.7 Score=45.16 Aligned_cols=57 Identities=19% Similarity=0.249 Sum_probs=39.4
Q ss_pred HHHHHHHHHCCCCEEEeccccCccCCCCC--cee-------ecccchHHHHHHHHHHcCCEEEEec
Q 003044 60 EDLIQKAKDGGLDVIETYVFWNVHEPSPG--NYN-------FEGRYDLVRFIKTIQKAGLYAHLRI 116 (854)
Q Consensus 60 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G--~yd-------f~g~~dl~~fl~la~~~gL~vilrp 116 (854)
.+.|.-+|++|+|+|.+-=++.....--| .-| |....++.++++.|+++||+|||-.
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 45788899999999997533332211111 112 2345699999999999999999885
No 74
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=76.14 E-value=5.5 Score=49.54 Aligned_cols=60 Identities=15% Similarity=0.245 Sum_probs=43.9
Q ss_pred HhHHHHHHHHHHHCCCCEEEe-ccc-------cCccCC---CCCceeecccchHHHHHHHHHHcCCEEEEec
Q 003044 56 PDMWEDLIQKAKDGGLDVIET-YVF-------WNVHEP---SPGNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (854)
Q Consensus 56 ~~~W~~~l~k~ka~G~N~V~~-yv~-------Wn~hEp---~~G~ydf~g~~dl~~fl~la~~~gL~vilrp 116 (854)
.+.|++.|..+|++|+|+|+. .|+ |.++-. .+ .-.|....+|.+|++.|+++||.|||..
T Consensus 250 ~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~-~~~~Gtp~dlk~LVd~aH~~GI~VilDv 320 (758)
T PLN02447 250 REFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAV-SSRSGTPEDLKYLIDKAHSLGLRVLMDV 320 (758)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccc-ccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 455888999999999999996 232 433211 01 1134556799999999999999999985
No 75
>PRK14705 glycogen branching enzyme; Provisional
Probab=75.94 E-value=44 Score=44.04 Aligned_cols=55 Identities=18% Similarity=0.210 Sum_probs=38.5
Q ss_pred HHHHHHHCCCCEEEe-ccc-------cCccC--CCCCceeecccchHHHHHHHHHHcCCEEEEec
Q 003044 62 LIQKAKDGGLDVIET-YVF-------WNVHE--PSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (854)
Q Consensus 62 ~l~k~ka~G~N~V~~-yv~-------Wn~hE--p~~G~ydf~g~~dl~~fl~la~~~gL~vilrp 116 (854)
.|.-+|++|+|+|+. .|+ |.+-- ...=.-.|.+..|+.+|++.|+++||.|||.-
T Consensus 771 lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 771 LVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 368899999999996 453 43210 00001134456799999999999999999883
No 76
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=75.11 E-value=13 Score=48.95 Aligned_cols=98 Identities=16% Similarity=0.292 Sum_probs=62.4
Q ss_pred CCCC--CHhHHHHHHHHHHHCCCCEEEe-ccc-cC---ccCCCCCcee----e----cccchHHHHHHHHHHc-CCEEEE
Q 003044 51 YPRS--TPDMWEDLIQKAKDGGLDVIET-YVF-WN---VHEPSPGNYN----F----EGRYDLVRFIKTIQKA-GLYAHL 114 (854)
Q Consensus 51 y~r~--~~~~W~~~l~k~ka~G~N~V~~-yv~-Wn---~hEp~~G~yd----f----~g~~dl~~fl~la~~~-gL~vil 114 (854)
.++. +-+.|++.|..+|++|+|+|.. .++ =. ..=...+++. | .+..|+.++++.+++. ||.+|+
T Consensus 124 lsK~mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~il 203 (1464)
T TIGR01531 124 LAKLLGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSIT 203 (1464)
T ss_pred hhhhcCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEE
Confidence 4453 5578999999999999999985 454 11 1111122222 3 2567899999999996 999998
Q ss_pred ecCceeeeecCCCCC-CcccccCCCeEeecCChhHHHHHHH
Q 003044 115 RIGPYVCAEWNFGGF-PVWLKYVPGISFRTDNEPFKRAMQG 154 (854)
Q Consensus 115 rpGPyi~aEw~~GGl-P~WL~~~p~~~~Rt~d~~y~~~~~~ 154 (854)
.. =|+.=+- =.||.++|+.-.-..+.+||+.+-.
T Consensus 204 Dv------V~NHTa~ds~Wl~eHPEa~Yn~~~sP~L~~A~e 238 (1464)
T TIGR01531 204 DI------VFNHTANNSPWLLEHPEAAYNCITSPHLRPAIV 238 (1464)
T ss_pred Ee------eecccccCCHHHHhChHhhcCCCCCchhhhHHH
Confidence 84 1333332 3488777765444445555554433
No 77
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=75.00 E-value=39 Score=35.99 Aligned_cols=43 Identities=19% Similarity=0.247 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCEEEE
Q 003044 58 MWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHL 114 (854)
Q Consensus 58 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vil 114 (854)
-+++.+++++++|++.|+...++ ..++..+.++++++||.|..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~--------------~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY--------------DWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc--------------cCCHHHHHHHHHHcCCeEEE
Confidence 38899999999999999985322 13688899999999999864
No 78
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=73.26 E-value=53 Score=35.14 Aligned_cols=49 Identities=20% Similarity=0.361 Sum_probs=38.1
Q ss_pred eeCCCCCHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCEEEE
Q 003044 49 IHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHL 114 (854)
Q Consensus 49 ~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vil 114 (854)
+.|-+.+ ++++|++++++|++.|++.. + + ..++.++.++++++||.+..
T Consensus 10 ~~~~~~~---l~~~l~~~a~~Gf~~VEl~~------~----~----~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 10 MLFGEYD---FLARFEKAAQCGFRGVEFMF------P----Y----DYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred hhccCCC---HHHHHHHHHHhCCCEEEEcC------C----C----CCCHHHHHHHHHHcCCcEEE
Confidence 4455555 77899999999999999831 1 1 13799999999999999854
No 79
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=71.48 E-value=6.6 Score=47.21 Aligned_cols=57 Identities=23% Similarity=0.322 Sum_probs=39.6
Q ss_pred HHHHHHHHHCCCCEEEe-ccc-------cCccCCCC--CceeecccchHHHHHHHHHHcCCEEEEec
Q 003044 60 EDLIQKAKDGGLDVIET-YVF-------WNVHEPSP--GNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (854)
Q Consensus 60 ~~~l~k~ka~G~N~V~~-yv~-------Wn~hEp~~--G~ydf~g~~dl~~fl~la~~~gL~vilrp 116 (854)
.++|.-+|++|+|+|.. .|+ |.+.-..- =.=.|.+..+|.+|++.|+++||.|||..
T Consensus 114 ~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 114 IEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred HHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 34688899999999996 342 32211100 01124456799999999999999999984
No 80
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=69.82 E-value=61 Score=34.83 Aligned_cols=129 Identities=14% Similarity=0.148 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCEEEE-ecCceeeeecCCCCCCcccccC
Q 003044 58 MWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHL-RIGPYVCAEWNFGGFPVWLKYV 136 (854)
Q Consensus 58 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vil-rpGPyi~aEw~~GGlP~WL~~~ 136 (854)
.|++.|+.++++|++.|++..-. .|+-.+ +++ ..++.++-++++++||.|.. .++ .+++|..+.
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~-~~~~~~---~~~-~~~~~~l~~~~~~~gl~v~s~~~~--------~~~~~~~~~-- 78 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGR-PHAFAP---DLK-AGGIKQIKALAQTYQMPIIGYTPE--------TNGYPYNMM-- 78 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCC-cccccc---ccC-chHHHHHHHHHHHcCCeEEEecCc--------ccCcCcccc--
Confidence 48999999999999999983211 011111 121 24688899999999999753 221 123333322
Q ss_pred CCeEeecCChhHHHHHHHHHHHHHHHHhhcccccccCCceEEeccccc-cc-ccccccCcccHHHHHHHHHHHHHcCCCc
Q 003044 137 PGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENE-YG-AQSKLLGAAGHNYMTWAAKMAVEMGTGV 214 (854)
Q Consensus 137 p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENE-yg-~~~~~~~~~~~~y~~~l~~~~~~~g~~v 214 (854)
..++.-+++..+.+++.++.-+ .+ |.+.|.+-.-.. +. .....+ +.-.+.++.|.+.+++.|+.+
T Consensus 79 ------~~~~~~r~~~~~~~~~~i~~a~--~l----Ga~~i~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~l 145 (275)
T PRK09856 79 ------LGDEHMRRESLDMIKLAMDMAK--EM----NAGYTLISAAHAGYLTPPNVIW-GRLAENLSELCEYAENIGMDL 145 (275)
T ss_pred ------CCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEEcCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHcCCEE
Confidence 1234444444445555555544 22 445554421110 00 000000 122346777888888887754
No 81
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=67.40 E-value=71 Score=36.16 Aligned_cols=137 Identities=15% Similarity=0.241 Sum_probs=86.9
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHH---HcCCEEEEecCceeeeecCCCCC-
Q 003044 54 STPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQ---KAGLYAHLRIGPYVCAEWNFGGF- 129 (854)
Q Consensus 54 ~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~---~~gL~vilrpGPyi~aEw~~GGl- 129 (854)
-.|+..+.-++.+|+.||+.--.|-.|. .|.+-|++-++..- +-+|..-|. |.+.--
T Consensus 55 ~~p~v~~~Q~~lA~~~GI~gF~~~~Ywf-----------~gk~lLe~p~~~~l~~~~~d~pFcl~--------WAN~~w~ 115 (345)
T PF14307_consen 55 RDPEVMEKQAELAKEYGIDGFCFYHYWF-----------NGKRLLEKPLENLLASKEPDFPFCLC--------WANENWT 115 (345)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEeeec-----------CCchHHHHHHHHHHhcCCCCCcEEEE--------ECCChhh
Confidence 3688899999999999999998888774 35666777775543 335544444 433211
Q ss_pred CcccccCCCeEeecCChhHHHHHHHHHHHHHHHHhhcccccccCCceEEecccccccccccccCcccHHHHHHHHHHHHH
Q 003044 130 PVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLLGAAGHNYMTWAAKMAVE 209 (854)
Q Consensus 130 P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~ 209 (854)
=.|-.....+.+-..... .+..++.++.|++.+++..++--+|-||+++=--.+. ..-+++++.+++.+++
T Consensus 116 ~~w~g~~~~~l~~q~y~~-~~d~~~~~~~l~~~F~D~rYikVdGKPv~~Iy~p~~~--------pd~~~~~~~wr~~a~~ 186 (345)
T PF14307_consen 116 RRWDGRNNEILIEQKYSG-EDDWKEHFRYLLPYFKDPRYIKVDGKPVFLIYRPGDI--------PDIKEMIERWREEAKE 186 (345)
T ss_pred hccCCCCccccccccCCc-hhHHHHHHHHHHHHhCCCCceeECCEEEEEEECcccc--------cCHHHHHHHHHHHHHH
Confidence 112222222212111110 1234677788889999877666688899987322111 2457899999999999
Q ss_pred cCCCcceee
Q 003044 210 MGTGVPWVM 218 (854)
Q Consensus 210 ~g~~vp~~~ 218 (854)
+|+.-+.+.
T Consensus 187 ~G~~giyii 195 (345)
T PF14307_consen 187 AGLPGIYII 195 (345)
T ss_pred cCCCceEEE
Confidence 999866554
No 82
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=66.98 E-value=55 Score=37.71 Aligned_cols=90 Identities=12% Similarity=0.123 Sum_probs=52.4
Q ss_pred HhHHHHHHHHHHHCCCCEEEec----cccCccCCCCCceeecccchHHHHHHHHHHcCCEEEE-ecCceeeeecCCCCCC
Q 003044 56 PDMWEDLIQKAKDGGLDVIETY----VFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHL-RIGPYVCAEWNFGGFP 130 (854)
Q Consensus 56 ~~~W~~~l~k~ka~G~N~V~~y----v~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vil-rpGPyi~aEw~~GGlP 130 (854)
+....+++++++++|+..|+.. ++|..-..+. ..++.++-++++++||.|.. -++-+.+..+..|
T Consensus 31 ~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~-------~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g--- 100 (382)
T TIGR02631 31 ALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQER-------DQIVRRFKKALDETGLKVPMVTTNLFSHPVFKDG--- 100 (382)
T ss_pred CcCHHHHHHHHHHhCCCEEEecccccCCCCCChhHH-------HHHHHHHHHHHHHhCCeEEEeeccccCCccccCC---
Confidence 3456689999999999999964 2222211100 23578899999999999763 3321111111111
Q ss_pred cccccCCCeEeecCChhHHHHHHHHHHHHHHHHh
Q 003044 131 VWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (854)
Q Consensus 131 ~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 164 (854)
.+-+.|+..+++.-+.+++.+..-+
T Consensus 101 ---------~las~d~~vR~~ai~~~kraId~A~ 125 (382)
T TIGR02631 101 ---------GFTSNDRSVRRYALRKVLRNMDLGA 125 (382)
T ss_pred ---------CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1334467666665555565555555
No 83
>PRK09989 hypothetical protein; Provisional
Probab=66.44 E-value=60 Score=34.73 Aligned_cols=42 Identities=19% Similarity=0.393 Sum_probs=34.0
Q ss_pred HHHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCEEEE
Q 003044 59 WEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHL 114 (854)
Q Consensus 59 W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vil 114 (854)
.+++|++++++|+..|++..+|. .+..++.++.+++||.|..
T Consensus 17 l~~~l~~~~~~Gfd~VEl~~~~~--------------~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 17 FIERFAAARKAGFDAVEFLFPYD--------------YSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred HHHHHHHHHHcCCCEEEECCccc--------------CCHHHHHHHHHHcCCcEEE
Confidence 77899999999999999844332 2467788889999999874
No 84
>PLN02960 alpha-amylase
Probab=65.39 E-value=12 Score=47.12 Aligned_cols=57 Identities=19% Similarity=0.278 Sum_probs=40.1
Q ss_pred HHHHHHHHHCCCCEEEe-ccc-------cCccCCC--CCceeecccchHHHHHHHHHHcCCEEEEec
Q 003044 60 EDLIQKAKDGGLDVIET-YVF-------WNVHEPS--PGNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (854)
Q Consensus 60 ~~~l~k~ka~G~N~V~~-yv~-------Wn~hEp~--~G~ydf~g~~dl~~fl~la~~~gL~vilrp 116 (854)
++.|.-+|++|+|+|+. .|+ |.+.-.- .=.-.|....+|.+|++.|+++||.|||..
T Consensus 420 e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 420 QKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 35688999999999996 453 4321100 001123455799999999999999999985
No 85
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=64.85 E-value=11 Score=33.72 Aligned_cols=50 Identities=16% Similarity=0.241 Sum_probs=33.9
Q ss_pred ceEEeCCcceEEEEEECCEEEEEEEcccccceeEEEeeeec-cCCCCEEEEEEeccCCc
Q 003044 493 PTLIVQSTGHALHIFINGQLSGSAFGTREARRFMYTGKVNL-RAGRNKIALLSVAVGLP 550 (854)
Q Consensus 493 ~~L~i~~~~D~~~VfVng~~~G~~~~~~~~~~~~~~~~i~l-~~g~n~L~ILven~Grv 550 (854)
..|++.+-...++-||||+++|..... ..+. ..+ ..|.++|++ +...|+.
T Consensus 34 l~l~a~~~~~~~~W~vdg~~~g~~~~~---~~~~----~~~~~~G~h~l~v-vD~~G~~ 84 (89)
T PF06832_consen 34 LVLKAAGGRGPVYWFVDGEPLGTTQPG---HQLF----WQPDRPGEHTLTV-VDAQGRS 84 (89)
T ss_pred EEEEEeCCCCcEEEEECCEEcccCCCC---CeEE----eCCCCCeeEEEEE-EcCCCCE
Confidence 356655556699999999999876432 1222 234 678998987 7777753
No 86
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=64.68 E-value=8.9 Score=41.41 Aligned_cols=52 Identities=21% Similarity=0.484 Sum_probs=38.8
Q ss_pred HhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCEEEEecC
Q 003044 56 PDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (854)
Q Consensus 56 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vilrpG 117 (854)
+...++.|+.+|++||++|++ ..|..+.+ ..+..++|+.|+++|+.|+-..|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEi---------SdGti~l~-~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEI---------SDGTIDLP-EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----------SSS----HHHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEe---------cCCceeCC-HHHHHHHHHHHHHCCCEEeeccc
Confidence 566788999999999999998 44555544 34778999999999999999987
No 87
>PRK12313 glycogen branching enzyme; Provisional
Probab=64.50 E-value=12 Score=45.89 Aligned_cols=54 Identities=15% Similarity=0.287 Sum_probs=37.9
Q ss_pred HHHHHHCCCCEEEe-ccc-------cCccCCC--CCceeecccchHHHHHHHHHHcCCEEEEec
Q 003044 63 IQKAKDGGLDVIET-YVF-------WNVHEPS--PGNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (854)
Q Consensus 63 l~k~ka~G~N~V~~-yv~-------Wn~hEp~--~G~ydf~g~~dl~~fl~la~~~gL~vilrp 116 (854)
|.-+|++|+|+|.. .|+ |.+.-.- .=.-.|.+..+|.+|++.|+++||.|||..
T Consensus 177 l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 177 IPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 58899999999995 453 3211000 001135566799999999999999999984
No 88
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=64.26 E-value=93 Score=36.11 Aligned_cols=164 Identities=16% Similarity=0.144 Sum_probs=86.6
Q ss_pred eCCCCCHhHHHHHHHHHHHCCCCEEEeccccCccCCCC----Cceeeccc---chHHHHHHHHHHcCCEEEEecCceeee
Q 003044 50 HYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSP----GNYNFEGR---YDLVRFIKTIQKAGLYAHLRIGPYVCA 122 (854)
Q Consensus 50 Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~----G~ydf~g~---~dl~~fl~la~~~gL~vilrpGPyi~a 122 (854)
+|+.+..+.-.+.+++++++|++.+.+=--|....... |.+.-.-. .-|..+.+.+++.||+.=|+..|.+.+
T Consensus 51 ~~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~ 130 (394)
T PF02065_consen 51 YYFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVS 130 (394)
T ss_dssp HTTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEE
T ss_pred cCcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEecccccc
Confidence 46778888889999999999998776655576542221 33322111 249999999999999988888777654
Q ss_pred ecC--CCCCCcccccCCCeE---ee------cCChhHHHHHHHHHHHHHHHHhhccccc-ccCCceEEeccccccccccc
Q 003044 123 EWN--FGGFPVWLKYVPGIS---FR------TDNEPFKRAMQGFTEKIVNLMKSENLFE-SQGGPIILSQIENEYGAQSK 190 (854)
Q Consensus 123 Ew~--~GGlP~WL~~~p~~~---~R------t~d~~y~~~~~~~~~~l~~~l~~~~~~~-~~gGpII~~QiENEyg~~~~ 190 (854)
.=. .-..|.|+...++-. -| ..+|+..+++...+. +.++++++-+ +=..+.-+ .|.++..
T Consensus 131 ~~S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~---~ll~~~gidYiK~D~n~~~----~~~~~~~- 202 (394)
T PF02065_consen 131 PDSDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVID---RLLREWGIDYIKWDFNRDI----TEAGSPS- 202 (394)
T ss_dssp SSSCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHH---HHHHHTT-SEEEEE-TS-T----TS-SSTT-
T ss_pred chhHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHH---HHHHhcCCCEEEeccccCC----CCCCCCC-
Confidence 211 224799998765421 12 234554444444333 4455444311 11111111 1222210
Q ss_pred ccCcccHHHHHH---HHHHHHHcCCCcceeecCCC
Q 003044 191 LLGAAGHNYMTW---AAKMAVEMGTGVPWVMCKEE 222 (854)
Q Consensus 191 ~~~~~~~~y~~~---l~~~~~~~g~~vp~~~~~~~ 222 (854)
.++...+|+.. +.+.+++..-+|.+-.|.+.
T Consensus 203 -~~~~~~~~~~~~y~l~~~L~~~~P~v~iE~CssG 236 (394)
T PF02065_consen 203 -LPEGYHRYVLGLYRLLDRLRARFPDVLIENCSSG 236 (394)
T ss_dssp -S-GHHHHHHHHHHHHHHHHHHHTTTSEEEE-BTT
T ss_pred -chHHHHHHHHHHHHHHHHHHHhCCCcEEEeccCC
Confidence 01123455553 44445566777878888753
No 89
>PRK09505 malS alpha-amylase; Reviewed
Probab=63.57 E-value=13 Score=45.99 Aligned_cols=58 Identities=12% Similarity=0.200 Sum_probs=42.4
Q ss_pred HHHHHHHHHHCCCCEEEe-ccccCccCCC----CC------------------ceeecccchHHHHHHHHHHcCCEEEEe
Q 003044 59 WEDLIQKAKDGGLDVIET-YVFWNVHEPS----PG------------------NYNFEGRYDLVRFIKTIQKAGLYAHLR 115 (854)
Q Consensus 59 W~~~l~k~ka~G~N~V~~-yv~Wn~hEp~----~G------------------~ydf~g~~dl~~fl~la~~~gL~vilr 115 (854)
+.+.|.-+|++|+|+|-+ .++=+.|... .| .-.|....++.++++.|+++||+|||.
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 567888999999999985 4554433221 11 112445579999999999999999998
Q ss_pred c
Q 003044 116 I 116 (854)
Q Consensus 116 p 116 (854)
.
T Consensus 312 ~ 312 (683)
T PRK09505 312 V 312 (683)
T ss_pred E
Confidence 5
No 90
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=63.28 E-value=13 Score=45.32 Aligned_cols=57 Identities=21% Similarity=0.289 Sum_probs=42.3
Q ss_pred CHhHHHHHHHHHHHCCCCEEEe-ccc-------cCccCCCCCcee------ecccchHHHHHHHHHHcCCEEEEe
Q 003044 55 TPDMWEDLIQKAKDGGLDVIET-YVF-------WNVHEPSPGNYN------FEGRYDLVRFIKTIQKAGLYAHLR 115 (854)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~-yv~-------Wn~hEp~~G~yd------f~g~~dl~~fl~la~~~gL~vilr 115 (854)
..+.=.+.|--+|+||+++|+. .|. |.+ .|..- |....||.+|||.|+++||-|||.
T Consensus 163 ~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGY----q~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 163 YFELAIELLPYLKELGITHIELMPVAEHPGDRSWGY----QGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCC----CcceeccccccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 3455566888899999999996 332 554 22222 334469999999999999999998
No 91
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=62.59 E-value=12 Score=45.14 Aligned_cols=59 Identities=15% Similarity=0.178 Sum_probs=42.3
Q ss_pred HhHHHHHHHHHHHCCCCEEEe-ccccCccCCCCCcee----------ecccchHHHHHHHHHHcCCEEEEec
Q 003044 56 PDMWEDLIQKAKDGGLDVIET-YVFWNVHEPSPGNYN----------FEGRYDLVRFIKTIQKAGLYAHLRI 116 (854)
Q Consensus 56 ~~~W~~~l~k~ka~G~N~V~~-yv~Wn~hEp~~G~yd----------f~g~~dl~~fl~la~~~gL~vilrp 116 (854)
-.-+.+.|.-+|++|+|+|-+ .++-+-.. ...|+ |....+|.+|++.|+++||+|||..
T Consensus 26 ~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~--~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 26 LRGIIEKLDYLKKLGVDYIWLNPFYVSPQK--DNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred HHHHHHhHHHHHHcCCCEEEECCcccCCCC--CCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 344677889999999999987 45432110 01222 3455799999999999999999985
No 92
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=62.03 E-value=80 Score=34.03 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.4
Q ss_pred HhHHHHHHHHHHHCCCCEEEecc
Q 003044 56 PDMWEDLIQKAKDGGLDVIETYV 78 (854)
Q Consensus 56 ~~~W~~~l~k~ka~G~N~V~~yv 78 (854)
.-.|+++|.-+|++||+.|++-|
T Consensus 17 ~~sW~erl~~AK~~GFDFvEmSv 39 (287)
T COG3623 17 GFSWLERLALAKELGFDFVEMSV 39 (287)
T ss_pred CCCHHHHHHHHHHcCCCeEEEec
Confidence 34599999999999999999865
No 93
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=61.29 E-value=18 Score=40.03 Aligned_cols=68 Identities=12% Similarity=0.160 Sum_probs=48.2
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEeccccCccCCC-CCceeeccc--chHHHHHHHHHHcCCEEEEecCceee
Q 003044 54 STPDMWEDLIQKAKDGGLDVIETYVFWNVHEPS-PGNYNFEGR--YDLVRFIKTIQKAGLYAHLRIGPYVC 121 (854)
Q Consensus 54 ~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~ydf~g~--~dl~~fl~la~~~gL~vilrpGPyi~ 121 (854)
...+..++.++++|+.||..=.+.+=..++... -+.|.|.-. -|..++++..+++|++|++..=|+|+
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~ 91 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIA 91 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCC
Confidence 477788999999999997654444332223221 134555432 38999999999999999999877774
No 94
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=61.11 E-value=26 Score=29.34 Aligned_cols=55 Identities=13% Similarity=0.154 Sum_probs=43.2
Q ss_pred HhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCEEEE
Q 003044 56 PDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHL 114 (854)
Q Consensus 56 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vil 114 (854)
|..-.+.++.+.+.|+|..++|++= ++. ++.+.+.. .|.++..+..+++|..|.|
T Consensus 12 pG~La~v~~~l~~~~inI~~i~~~~--~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 12 PGRLAAVTEILSEAGINIRALSIAD--TSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CChHHHHHHHHHHCCCCEEEEEEEe--cCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 5567788999999999999999732 333 58777765 5778999999999988754
No 95
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=60.95 E-value=9.7 Score=38.75 Aligned_cols=62 Identities=23% Similarity=0.364 Sum_probs=28.1
Q ss_pred CccEEEEECCeeeeeeec-ccccCCCCCccccCCcCCCcccCCCCCCceeEEecCcccccCCcceEEEEEeeCC
Q 003044 644 MGKGQIWINGQSVGRYWT-AYAKGDCNGCNYVGGYRPTKCQLGCGQPTQRWYHVPRSWLKPTQNFLVVFEELGG 716 (854)
Q Consensus 644 ~gKG~vwVNG~nLGRYW~-~~~~g~~~~~~~~G~~~~~~~~~~~~~PQqtlYhVP~~~Lk~g~N~lvifEe~g~ 716 (854)
.++=+|.||| ..+..+. .++. +.|.++++ +-.|..+.--|-||+.+|++|.|+|.|=-..|.
T Consensus 92 ~~~~~V~vNg-~~~~~~~~~~~~---d~~~~r~g-------~~~G~~~~~~~~ipa~~L~~G~Nti~lt~~~gs 154 (167)
T PF14683_consen 92 GGRLQVSVNG-WSGPFPSAPFGN---DNAIYRSG-------IHRGNYRLYEFDIPASLLKAGENTITLTVPSGS 154 (167)
T ss_dssp T-EEEEEETT-EE--------------S--GGGT----------S---EEEEEE-TTSS-SEEEEEEEEEE-S-
T ss_pred CCCEEEEEcC-ccCCccccccCC---CCceeeCc-------eecccEEEEEEEEcHHHEEeccEEEEEEEccCC
Confidence 3556899999 7777663 1211 23333331 222445666677999999999999876444443
No 96
>PLN00196 alpha-amylase; Provisional
Probab=60.65 E-value=37 Score=39.74 Aligned_cols=57 Identities=16% Similarity=0.248 Sum_probs=40.4
Q ss_pred HHHHHHHHHCCCCEEEec-cccCc--cCCCCCc-ee-----ecccchHHHHHHHHHHcCCEEEEec
Q 003044 60 EDLIQKAKDGGLDVIETY-VFWNV--HEPSPGN-YN-----FEGRYDLVRFIKTIQKAGLYAHLRI 116 (854)
Q Consensus 60 ~~~l~k~ka~G~N~V~~y-v~Wn~--hEp~~G~-yd-----f~g~~dl~~fl~la~~~gL~vilrp 116 (854)
.+.|.-+|++|+++|-+. ++-+. |--.+.. |+ |....+|.++++.|+++||.||+..
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 467888899999999874 44221 2222221 22 3344699999999999999999985
No 97
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=60.55 E-value=14 Score=44.95 Aligned_cols=56 Identities=18% Similarity=0.370 Sum_probs=37.6
Q ss_pred HHHHHHHHCCCCEEEe-ccc---------------cCccCC----CCCcee----ec--ccchHHHHHHHHHHcCCEEEE
Q 003044 61 DLIQKAKDGGLDVIET-YVF---------------WNVHEP----SPGNYN----FE--GRYDLVRFIKTIQKAGLYAHL 114 (854)
Q Consensus 61 ~~l~k~ka~G~N~V~~-yv~---------------Wn~hEp----~~G~yd----f~--g~~dl~~fl~la~~~gL~vil 114 (854)
+.|.-+|++|+|+|+. .|+ |.+.-. .++.|- |- ...+|.+|++.|+++||.|||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vil 247 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIM 247 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEE
Confidence 4588999999999996 443 322210 001111 10 126899999999999999999
Q ss_pred ec
Q 003044 115 RI 116 (854)
Q Consensus 115 rp 116 (854)
..
T Consensus 248 Dv 249 (605)
T TIGR02104 248 DV 249 (605)
T ss_pred EE
Confidence 84
No 98
>PRK10785 maltodextrin glucosidase; Provisional
Probab=60.18 E-value=17 Score=44.34 Aligned_cols=57 Identities=21% Similarity=0.299 Sum_probs=41.0
Q ss_pred HHHHHHHHHCCCCEEEe-ccccC--ccCCCCCce-----eecccchHHHHHHHHHHcCCEEEEec
Q 003044 60 EDLIQKAKDGGLDVIET-YVFWN--VHEPSPGNY-----NFEGRYDLVRFIKTIQKAGLYAHLRI 116 (854)
Q Consensus 60 ~~~l~k~ka~G~N~V~~-yv~Wn--~hEp~~G~y-----df~g~~dl~~fl~la~~~gL~vilrp 116 (854)
.+.|.-+|++|+|+|-. .||=+ .|---..-| .|.+..+|.+|++.|++.||+|||..
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 56788899999999996 56632 121111111 24456799999999999999999984
No 99
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=59.67 E-value=18 Score=43.53 Aligned_cols=59 Identities=15% Similarity=0.150 Sum_probs=41.9
Q ss_pred HhHHHHHHHHHHHCCCCEEEe-ccccCccCCCCCce----------eecccchHHHHHHHHHHcCCEEEEec
Q 003044 56 PDMWEDLIQKAKDGGLDVIET-YVFWNVHEPSPGNY----------NFEGRYDLVRFIKTIQKAGLYAHLRI 116 (854)
Q Consensus 56 ~~~W~~~l~k~ka~G~N~V~~-yv~Wn~hEp~~G~y----------df~g~~dl~~fl~la~~~gL~vilrp 116 (854)
-.-+.+.|.-+|++|+|+|-+ .|+=+-. ....| .|....++.++++.|+++||+|||..
T Consensus 27 l~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~--~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 27 FPGLTSKLDYLKWLGVDALWLLPFFQSPL--RDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred HHHHHHhHHHHHHCCCCEEEECCCcCCCC--CCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 344677899999999999986 4441100 01112 23455799999999999999999974
No 100
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=59.55 E-value=59 Score=35.64 Aligned_cols=83 Identities=19% Similarity=0.310 Sum_probs=62.4
Q ss_pred ceeEEEecCcEEECCEEeEEEEEEeeCCCC-CHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeec--ccchHHHH
Q 003044 25 HCSVTYDRKALLINGQRRILFSGSIHYPRS-TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFE--GRYDLVRF 101 (854)
Q Consensus 25 ~~~v~~d~~~~~idG~~~~~~sg~~Hy~r~-~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~--g~~dl~~f 101 (854)
...|.+ +.+.+.+.+++++.|=- .+ .++.-.+.-+++|++|+..++.|.|=+...| +.|. |...+..+
T Consensus 13 ~~~~~~--~~~~~g~~~~~~iaGPC---sie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~----~s~~G~g~~gl~~l 83 (266)
T PRK13398 13 KTIVKV--GDVVIGGEEKIIIAGPC---AVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSP----YSFQGLGEEGLKIL 83 (266)
T ss_pred CcEEEE--CCEEEcCCCEEEEEeCC---cCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCC----CccCCcHHHHHHHH
Confidence 344555 33777777888888832 22 6788888999999999999999988744442 3555 56789999
Q ss_pred HHHHHHcCCEEEEec
Q 003044 102 IKTIQKAGLYAHLRI 116 (854)
Q Consensus 102 l~la~~~gL~vilrp 116 (854)
-+.|++.||.++-.|
T Consensus 84 ~~~~~~~Gl~~~te~ 98 (266)
T PRK13398 84 KEVGDKYNLPVVTEV 98 (266)
T ss_pred HHHHHHcCCCEEEee
Confidence 999999999988775
No 101
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=57.51 E-value=17 Score=43.88 Aligned_cols=80 Identities=20% Similarity=0.304 Sum_probs=48.8
Q ss_pred CHhHHHHHHHHHHHCCCCEEEec-cccCccCCCCCce--------eeccc----chHHHHHHHHHHcCCEEEEecCceee
Q 003044 55 TPDMWEDLIQKAKDGGLDVIETY-VFWNVHEPSPGNY--------NFEGR----YDLVRFIKTIQKAGLYAHLRIGPYVC 121 (854)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~y-v~Wn~hEp~~G~y--------df~g~----~dl~~fl~la~~~gL~vilrpGPyi~ 121 (854)
.++.=+..|.+|+...||.|+.| ..|.+|.|.|+.= |+.++ .-+...|+.|++.|+.++.=--=|-.
T Consensus 116 ~~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa 195 (559)
T PF13199_consen 116 SAEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAA 195 (559)
T ss_dssp GHHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEE
T ss_pred CchhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhcc
Confidence 34567889999999999999999 8899999987543 22222 35789999999999998744222211
Q ss_pred eec--CCCCCCcccc
Q 003044 122 AEW--NFGGFPVWLK 134 (854)
Q Consensus 122 aEw--~~GGlP~WL~ 134 (854)
-+. ..|=.|.|-+
T Consensus 196 ~~~~~~~gv~~eW~l 210 (559)
T PF13199_consen 196 NNNYEEDGVSPEWGL 210 (559)
T ss_dssp ETT--S--SS-GGBE
T ss_pred ccCcccccCCchhhh
Confidence 121 2566788886
No 102
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=57.47 E-value=22 Score=40.00 Aligned_cols=72 Identities=22% Similarity=0.261 Sum_probs=56.4
Q ss_pred EEEEeeCCCCCHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCc-eeecccchHHHHHHHHHHcCCEEEEecCceeeee
Q 003044 45 FSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGN-YNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAE 123 (854)
Q Consensus 45 ~sg~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~-ydf~g~~dl~~fl~la~~~gL~vilrpGPyi~aE 123 (854)
++=++.+.|.+.+.=...|++|...|+..|=| ++|.|++.. --|. -+.++++.|+++||+||+..-|-|.-|
T Consensus 4 ~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~IFt----sl~~~~~~~~~~~~---~~~ell~~Anklg~~vivDvnPsil~~ 76 (360)
T COG3589 4 LGFSIFPNRSPKEKDIAYIDRMHKYGFKRIFT----SLLIPEEDAELYFH---RFKELLKEANKLGLRVIVDVNPSILKE 76 (360)
T ss_pred eeEEeccCCCcchhHHHHHHHHHHcCccceee----ecccCCchHHHHHH---HHHHHHHHHHhcCcEEEEEcCHHHHhh
Confidence 45567777888888888999999999976655 677777542 2233 688899999999999999998877655
No 103
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=57.29 E-value=21 Score=43.02 Aligned_cols=56 Identities=14% Similarity=0.221 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHCCCCEEEe-ccccCccCCC-CCce----------eecccchHHHHHHHHHHcCCEEEEec
Q 003044 58 MWEDLIQKAKDGGLDVIET-YVFWNVHEPS-PGNY----------NFEGRYDLVRFIKTIQKAGLYAHLRI 116 (854)
Q Consensus 58 ~W~~~l~k~ka~G~N~V~~-yv~Wn~hEp~-~G~y----------df~g~~dl~~fl~la~~~gL~vilrp 116 (854)
-+.++|.-+|++|+++|-+ .++-. |. ..-| +|....|+.++++.|+++||+|||..
T Consensus 34 gi~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 34 GVTQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 3567899999999999987 45422 11 1122 23455799999999999999999885
No 104
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=56.71 E-value=21 Score=42.51 Aligned_cols=113 Identities=15% Similarity=0.188 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHCCCCEEEeccccCccCCC---CCceeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccc
Q 003044 58 MWEDLIQKAKDGGLDVIETYVFWNVHEPS---PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLK 134 (854)
Q Consensus 58 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~---~G~ydf~g~~dl~~fl~la~~~gL~vilrpGPyi~aEw~~GGlP~WL~ 134 (854)
.++++++.||++|++.-+.-|-|...=|. .+.-+-.|..-...+|+...++||...+-.= =| .+|.+|.
T Consensus 92 ~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLf-----Hw---DlPq~Le 163 (524)
T KOG0626|consen 92 RYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLF-----HW---DLPQALE 163 (524)
T ss_pred hhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEe-----cC---CCCHHHH
Confidence 47899999999999999999999987775 2457888888888999999999999665521 23 4899998
Q ss_pred c-CCCeEeecCChhHHHHHHHHHHHHHHHHhhcccccccCCceEEec
Q 003044 135 Y-VPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQ 180 (854)
Q Consensus 135 ~-~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 180 (854)
+ .-+-.-+..=..|++.++--|++...++| ....=|...|+.++
T Consensus 164 DeYgGwLn~~ivedF~~yA~~CF~~fGDrVK--~WiT~NEP~v~s~~ 208 (524)
T KOG0626|consen 164 DEYGGWLNPEIVEDFRDYADLCFQEFGDRVK--HWITFNEPNVFSIG 208 (524)
T ss_pred HHhccccCHHHHHHHHHHHHHHHHHhcccce--eeEEecccceeeee
Confidence 6 34432222234577888888888888887 43333555555443
No 105
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=55.94 E-value=41 Score=38.85 Aligned_cols=54 Identities=19% Similarity=0.263 Sum_probs=42.2
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCEEEEec
Q 003044 54 STPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (854)
Q Consensus 54 ~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vilrp 116 (854)
...+.|+++++.+|++||+....=+- ....+.. ..|...++.|++.|+++.+-+
T Consensus 14 yt~~dw~~di~~A~~~GIDgFaLNig------~~d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 14 YTQEDWEADIRLAQAAGIDGFALNIG------SSDSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecc------cCCcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 48899999999999999998877443 1222222 368888999999999999886
No 106
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=55.86 E-value=11 Score=32.16 Aligned_cols=44 Identities=20% Similarity=0.427 Sum_probs=27.5
Q ss_pred eEEeCCcceEEEEEECCEEEEEEEcccccceeEEEeeeeccCCCCEEEEEEeccCC
Q 003044 494 TLIVQSTGHALHIFINGQLSGSAFGTREARRFMYTGKVNLRAGRNKIALLSVAVGL 549 (854)
Q Consensus 494 ~L~i~~~~D~~~VfVng~~~G~~~~~~~~~~~~~~~~i~l~~g~n~L~ILven~Gr 549 (854)
.|.|...-.-|.|||||+++|... ..+. .++.|.++|.| +.-|.
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G~tp-------~~~~---~l~~G~~~v~v--~~~Gy 46 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIGTTP-------LTLK---DLPPGEHTVTV--EKPGY 46 (71)
T ss_pred EEEEEEECCCCEEEECCEEeccCc-------ceee---ecCCccEEEEE--EECCC
Confidence 466666556789999999999431 1221 25677766555 44453
No 107
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=55.32 E-value=80 Score=33.91 Aligned_cols=101 Identities=11% Similarity=0.158 Sum_probs=62.7
Q ss_pred EEeeCCCCCHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCc-eeecccchHHHHHHHHHHcCCEEEEecCceeeeecC
Q 003044 47 GSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGN-YNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWN 125 (854)
Q Consensus 47 g~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~-ydf~g~~dl~~fl~la~~~gL~vilrpGPyi~aEw~ 125 (854)
|..+..+-+ -++.|+.+.++|++.|+... .+|..-. -+++ ..++.++.++++++||.+.+- +||.
T Consensus 3 g~~~~~~~~---~~~~~~~~~~~G~~~vel~~----~~~~~~~~~~~~-~~~~~~l~~~~~~~gl~ls~h-~p~~----- 68 (273)
T smart00518 3 GAHVSAAGG---LYKAFIEAVDIGARSFQLFL----GNPRSWKGVRLS-EETAEKFKEALKENNIDVSVH-APYL----- 68 (273)
T ss_pred eEEEcccCc---HhHHHHHHHHcCCCEEEEEC----CCCCCCCCCCCC-HHHHHHHHHHHHHcCCCEEEE-CCce-----
Confidence 334444444 44789999999999999842 3332110 0122 236889999999999986542 3431
Q ss_pred CCCCCcccccCCCeEeecCChhHHHHHHHHHHHHHHHHhhcccccccCCceEEec
Q 003044 126 FGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQ 180 (854)
Q Consensus 126 ~GGlP~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 180 (854)
+.+.+.|+..+++..+++++.+...+ .+ |.++|.+.
T Consensus 69 -------------~nl~s~d~~~r~~~~~~l~~~i~~A~--~l----Ga~~vv~h 104 (273)
T smart00518 69 -------------INLASPDKEKVEKSIERLIDEIKRCE--EL----GIKALVFH 104 (273)
T ss_pred -------------ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 12345577777777777777777666 33 55655543
No 108
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=54.51 E-value=26 Score=37.77 Aligned_cols=54 Identities=13% Similarity=0.364 Sum_probs=43.6
Q ss_pred CHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCEEEEecCc
Q 003044 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGP 118 (854)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vilrpGP 118 (854)
.....++.++.+|+.||++|++ ..|..+++ ..+..++|+.++++||.|+-..|.
T Consensus 69 ~q~~~~~Yl~~~k~lGf~~IEi---------S~G~~~i~-~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 69 SKGKFDEYLNECDELGFEAVEI---------SDGSMEIS-LEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred HhhhHHHHHHHHHHcCCCEEEE---------cCCccCCC-HHHHHHHHHHHHhCCCeEeccccc
Confidence 3466778888999999999998 45666654 347889999999999999988773
No 109
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=54.37 E-value=80 Score=31.73 Aligned_cols=104 Identities=16% Similarity=0.134 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHCCCCEEEeccc--cCccCC----CCCceeecccchHHHHHHHHHHcCCEEE-EecCceeeeecCCCCC
Q 003044 57 DMWEDLIQKAKDGGLDVIETYVF--WNVHEP----SPGNYNFEGRYDLVRFIKTIQKAGLYAH-LRIGPYVCAEWNFGGF 129 (854)
Q Consensus 57 ~~W~~~l~k~ka~G~N~V~~yv~--Wn~hEp----~~G~ydf~g~~dl~~fl~la~~~gL~vi-lrpGPyi~aEw~~GGl 129 (854)
...++..+.+++.|+..+....+ |..... .+.+ .-.....+.+.+++|++.|...+ +.+|.
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~~~g~----------- 94 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIVVHSGR----------- 94 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEEEECTT-----------
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCceeecCcc-----------
Confidence 45667778888999997665444 433211 1111 11223489999999999999865 55542
Q ss_pred CcccccCCCeEeecCChhHHHHHHHHHHHHHHHHhhcccccccCCceEEeccccccccc
Q 003044 130 PVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQ 188 (854)
Q Consensus 130 P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~ 188 (854)
|-.. + ......-++.+.+.+++|+++.++++ |.+-+||..+..
T Consensus 95 --~~~~-~----~~~~~~~~~~~~~~l~~l~~~a~~~g---------v~i~lE~~~~~~ 137 (213)
T PF01261_consen 95 --YPSG-P----EDDTEENWERLAENLRELAEIAEEYG---------VRIALENHPGPF 137 (213)
T ss_dssp --ESSS-T----TSSHHHHHHHHHHHHHHHHHHHHHHT---------SEEEEE-SSSSS
T ss_pred --cccc-c----CCCHHHHHHHHHHHHHHHHhhhhhhc---------ceEEEecccCcc
Confidence 0000 0 11123566777788888888888442 456789988764
No 110
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=54.10 E-value=20 Score=39.00 Aligned_cols=57 Identities=21% Similarity=0.275 Sum_probs=41.5
Q ss_pred chhcccCC---CCCccEEEEEEEecCCCCcccccCCCCceEEeCCcceEEEEEECCEEEEE
Q 003044 458 LLEQINVT---RDASDYLWYITSVDIGSSESFLHGGELPTLIVQSTGHALHIFINGQLSGS 515 (854)
Q Consensus 458 ~~Eql~~t---~d~~GYl~Y~t~i~~~~~~~~~~~g~~~~L~i~~~~D~~~VfVng~~~G~ 515 (854)
++-.+++. +|-+|.+||+.++.++.+.. ...+....|++.+++-.|.|+|||.-+=.
T Consensus 73 s~nDi~~d~~lrdfv~~~wyer~v~vpe~w~-~~~~~r~vlr~~s~H~~Aivwvng~~~~~ 132 (297)
T KOG2024|consen 73 SFNDIGQDWRLRDFVGLVWYERTVTVPESWT-QDLGKRVVLRIGSAHSYAIVWVNGVDALE 132 (297)
T ss_pred chhccccCCccccceeeeEEEEEEEcchhhh-hhcCCeEEEEeecccceeEEEEcceeecc
Confidence 35555543 56889999999998875431 22344568999999999999999876533
No 111
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=54.09 E-value=5.3 Score=42.52 Aligned_cols=53 Identities=15% Similarity=0.213 Sum_probs=43.0
Q ss_pred HHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCEEEEe
Q 003044 60 EDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLR 115 (854)
Q Consensus 60 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vilr 115 (854)
-...+++.++|.+.|.+.++|....+..-.+..+ ++.++.+.|+++||.||+.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~---~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIE---EIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHH---HHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHH---HHHHHHHHHhcCCcEEEEE
Confidence 4568889999999999999997765554344444 8999999999999999999
No 112
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=51.44 E-value=64 Score=36.58 Aligned_cols=82 Identities=17% Similarity=0.318 Sum_probs=60.6
Q ss_pred eeEEEecCcEEECCEEeEEEEEEeeCCCC-CHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeecc--cchHHHHH
Q 003044 26 CSVTYDRKALLINGQRRILFSGSIHYPRS-TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEG--RYDLVRFI 102 (854)
Q Consensus 26 ~~v~~d~~~~~idG~~~~~~sg~~Hy~r~-~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g--~~dl~~fl 102 (854)
..|.+ +.+.+.|.++.++.| +=-+ +++.-.+.-+.+|++|.+.++.|+|- |+---|.|.| ..-|.-+.
T Consensus 80 t~v~~--~~~~ig~~~~~~IAG---PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fK----pRTsp~sf~G~g~~gL~~L~ 150 (335)
T PRK08673 80 TVVKV--GDVEIGGGKPVVIAG---PCSVESEEQILEIARAVKEAGAQILRGGAFK----PRTSPYSFQGLGEEGLKLLA 150 (335)
T ss_pred CEEEE--CCEEECCCceEEEEe---cCccCCHHHHHHHHHHHHHhchhhccCcEec----CCCCCcccccccHHHHHHHH
Confidence 34444 347777888888888 3333 67777888889999999999999985 3333367765 45677777
Q ss_pred HHHHHcCCEEEEec
Q 003044 103 KTIQKAGLYAHLRI 116 (854)
Q Consensus 103 ~la~~~gL~vilrp 116 (854)
+.|++.||.++-.+
T Consensus 151 ~~~~~~Gl~v~tev 164 (335)
T PRK08673 151 EAREETGLPIVTEV 164 (335)
T ss_pred HHHHHcCCcEEEee
Confidence 88999999988774
No 113
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=50.67 E-value=44 Score=28.66 Aligned_cols=31 Identities=6% Similarity=0.323 Sum_probs=23.1
Q ss_pred CcceEEEEEECCEEEEEEEccccc--ceeEEEe
Q 003044 499 STGHALHIFINGQLSGSAFGTREA--RRFMYTG 529 (854)
Q Consensus 499 ~~~D~~~VfVng~~~G~~~~~~~~--~~~~~~~ 529 (854)
...|.|.||++++++|++++..+. ..+.|+.
T Consensus 25 k~~dsaEV~~g~EfiGvi~~DedeGe~Sy~f~M 57 (63)
T PF11324_consen 25 KKDDSAEVYIGDEFIGVIYRDEDEGEVSYNFQM 57 (63)
T ss_pred CCCCceEEEeCCEEEEEEEeecCCCcEEEEEEE
Confidence 468999999999999999976433 3344443
No 114
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=50.42 E-value=1.2e+02 Score=34.96 Aligned_cols=139 Identities=15% Similarity=0.173 Sum_probs=71.5
Q ss_pred HHCCCCEEEeccc---------------cCcc---CCCCCceeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCC
Q 003044 67 KDGGLDVIETYVF---------------WNVH---EPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGG 128 (854)
Q Consensus 67 ka~G~N~V~~yv~---------------Wn~h---Ep~~G~ydf~g~~dl~~fl~la~~~gL~vilrpGPyi~aEw~~GG 128 (854)
|-+|||.+|.-|- |-.- .+..|.|||+.+..=..||+.|++.|...++-+- + -
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aFS--------N-S 127 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADGSYDWDADAGQRWFLKAAKERGVNIFEAFS--------N-S 127 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS-B-TTSSHHHHHHHHHHHHTT---EEEE---------S-S
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccccCCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEee--------c-C
Confidence 4578888875442 3222 2457899998777777799999999999877642 1 3
Q ss_pred CCcccccCCCe----EeecC-ChhHHHHHHHHHHHHHHHHhhcccccccCCceEEecccccccccccccC---------c
Q 003044 129 FPVWLKYVPGI----SFRTD-NEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLLG---------A 194 (854)
Q Consensus 129 lP~WL~~~p~~----~~Rt~-d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~---------~ 194 (854)
.|.|+.+.-.. ...++ -+...++-..|+..++++++.+.+ +|=-+--=||.... +..+ +
T Consensus 128 PP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI------~f~~IsP~NEP~~~-W~~~~QEG~~~~~~ 200 (384)
T PF14587_consen 128 PPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGI------NFDYISPFNEPQWN-WAGGSQEGCHFTNE 200 (384)
T ss_dssp S-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--------EEEEE--S-TTS--GG--SS-B----HH
T ss_pred CCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCC------ccceeCCcCCCCCC-CCCCCcCCCCCCHH
Confidence 68888763211 00011 234566677788888888864433 34344444887642 1111 1
Q ss_pred ccHHHHHHHHHHHHHcCCCcceeecCC
Q 003044 195 AGHNYMTWAAKMAVEMGTGVPWVMCKE 221 (854)
Q Consensus 195 ~~~~y~~~l~~~~~~~g~~vp~~~~~~ 221 (854)
...+.++.|...+++.|+..-+..|+.
T Consensus 201 e~a~vI~~L~~~L~~~GL~t~I~~~Ea 227 (384)
T PF14587_consen 201 EQADVIRALDKALKKRGLSTKISACEA 227 (384)
T ss_dssp HHHHHHHHHHHHHHHHT-S-EEEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCceEEecch
Confidence 346788899999999999876666554
No 115
>PRK09875 putative hydrolase; Provisional
Probab=49.99 E-value=1.7e+02 Score=32.57 Aligned_cols=89 Identities=11% Similarity=0.050 Sum_probs=59.0
Q ss_pred eEEEecCcEEECCEEeEEEEEEeeCCCCCHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHH
Q 003044 27 SVTYDRKALLINGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQ 106 (854)
Q Consensus 27 ~v~~d~~~~~idG~~~~~~sg~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~ 106 (854)
.+++-+.+++++..+.. +......-..+.=...|+.+|++|.+||----+.. -.+|...+.++++
T Consensus 7 G~tl~HEHl~~~~~~~~---~~~~~~l~~~~~~~~el~~~~~~Gg~tiVd~T~~g------------~GRd~~~l~~is~ 71 (292)
T PRK09875 7 GYTLAHEHLHIDLSGFK---NNVDCRLDQYAFICQEMNDLMTRGVRNVIEMTNRY------------MGRNAQFMLDVMR 71 (292)
T ss_pred CcceecCCeEecChhhc---CCcccccccHHHHHHHHHHHHHhCCCeEEecCCCc------------cCcCHHHHHHHHH
Confidence 46666777777664321 11122112445556688899999998874222221 2379999999999
Q ss_pred HcCCEEEEecCceeeeecCCCCCCccccc
Q 003044 107 KAGLYAHLRIGPYVCAEWNFGGFPVWLKY 135 (854)
Q Consensus 107 ~~gL~vilrpGPyi~aEw~~GGlP~WL~~ 135 (854)
+-|+.||.-.|-|.-.. +|.|+..
T Consensus 72 ~tgv~Iv~~TG~y~~~~-----~p~~~~~ 95 (292)
T PRK09875 72 ETGINVVACTGYYQDAF-----FPEHVAT 95 (292)
T ss_pred HhCCcEEEcCcCCCCcc-----CCHHHhc
Confidence 99999999999885332 6788774
No 116
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=49.30 E-value=52 Score=36.48 Aligned_cols=68 Identities=19% Similarity=0.368 Sum_probs=51.3
Q ss_pred CCCCHhHHHHHHHHHHHCCCC--EEEeccccCccCCCCCceeeccc--chHHHHHHHHHHcCCEEEEecCceeee
Q 003044 52 PRSTPDMWEDLIQKAKDGGLD--VIETYVFWNVHEPSPGNYNFEGR--YDLVRFIKTIQKAGLYAHLRIGPYVCA 122 (854)
Q Consensus 52 ~r~~~~~W~~~l~k~ka~G~N--~V~~yv~Wn~hEp~~G~ydf~g~--~dl~~fl~la~~~gL~vilrpGPyi~a 122 (854)
...+.+.-++.++++++.|+. +|.+=..|- ..-|.|.|.-. -|..++++..++.|+++++..=|+|..
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~---~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~ 96 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNWE---TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINT 96 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCcc---ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCC
Confidence 456888899999999999964 555444452 33466665432 389999999999999999998888753
No 117
>KOG4729 consensus Galactoside-binding lectin [General function prediction only]
Probab=49.03 E-value=20 Score=38.82 Aligned_cols=82 Identities=9% Similarity=-0.083 Sum_probs=56.1
Q ss_pred ceEEecCCCCeEeeEeeeccCCCC---CCCCCC----CCCCccCCChhhhHhhhcCCCCceeEEecCCCccCCCCCC-Cc
Q 003044 760 KVHLRCSPGHTISSIKFASFGTPL---GTCGSY----QQGPCHSPTSYDILEKKCVGKQRCAVTISNSNFGVDPCPN-VL 831 (854)
Q Consensus 760 ~~~L~C~~g~~Is~I~~A~YGR~~---~~C~~~----~~~~C~~~~s~~~V~~~C~Gk~~C~i~a~~~~Fg~DPCpg-t~ 831 (854)
+....|++...+ .++.+.+++.+ ..|++. ....|.....+..+...|.+++.|.+..++.-++ -+|-. ..
T Consensus 144 ~~~~~~~~~~~~-~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ct~~~~~~~~~-~~~~~~~~ 221 (265)
T KOG4729|consen 144 PTDPPRSEIRLE-CREGRRLAVYSAVMKTSPQKDPETEIRHECVSSVLPQLLRQCHAKEGCTLKSDGIKGH-CRHGHLHK 221 (265)
T ss_pred CCCCccCcccch-hhhcccccccccccccCCCCcccCCCCceeecccchhhhhcccccCCceeecCCcccc-ccccceeE
Confidence 344445555545 56666677754 356542 2233333467888899999999999999999887 67744 46
Q ss_pred ceEEEEEEeeCC
Q 003044 832 KRLSVEAICSPT 843 (854)
Q Consensus 832 KYL~V~Y~C~~~ 843 (854)
+|+-|.+.|.+.
T Consensus 222 ~~~~~n~e~~~~ 233 (265)
T KOG4729|consen 222 VYVTVTEEIFSE 233 (265)
T ss_pred EEEEecccccch
Confidence 799999998763
No 118
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=48.77 E-value=37 Score=42.87 Aligned_cols=64 Identities=22% Similarity=0.154 Sum_probs=45.5
Q ss_pred CHhHHHHHHHHHHHCCCCEEEe-ccccC----ccCCCCC-----ceeecccchHHHHHHHHHHcCCEEEEecCc
Q 003044 55 TPDMWEDLIQKAKDGGLDVIET-YVFWN----VHEPSPG-----NYNFEGRYDLVRFIKTIQKAGLYAHLRIGP 118 (854)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~-yv~Wn----~hEp~~G-----~ydf~g~~dl~~fl~la~~~gL~vilrpGP 118 (854)
+-+.+.+.|.-++++|+++|.+ .++=+ .|-...- .-+|.+..++.+|++.|+++||.|||..=|
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVp 87 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVP 87 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 4566899999999999999976 34311 1111100 113456789999999999999999998644
No 119
>PLN02361 alpha-amylase
Probab=47.76 E-value=38 Score=39.34 Aligned_cols=57 Identities=14% Similarity=0.130 Sum_probs=39.2
Q ss_pred HHHHHHHHHCCCCEEEeccccC---ccCCCCCc-ee----ecccchHHHHHHHHHHcCCEEEEec
Q 003044 60 EDLIQKAKDGGLDVIETYVFWN---VHEPSPGN-YN----FEGRYDLVRFIKTIQKAGLYAHLRI 116 (854)
Q Consensus 60 ~~~l~k~ka~G~N~V~~yv~Wn---~hEp~~G~-yd----f~g~~dl~~fl~la~~~gL~vilrp 116 (854)
.+.|.-++++|+++|-+.=+.. .|--.+.. |+ |....+|.++++.|+++||+||+..
T Consensus 32 ~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 32 EGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 4467778999999998743221 22222222 22 3445799999999999999999874
No 120
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=46.27 E-value=38 Score=38.41 Aligned_cols=114 Identities=21% Similarity=0.362 Sum_probs=68.4
Q ss_pred EEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCeEeecCChhHHHHH
Q 003044 73 VIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAM 152 (854)
Q Consensus 73 ~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vilrpGPyi~aEw~~GGlP~WL~~~p~~~~Rt~d~~y~~~~ 152 (854)
.|.+.|+|+.+--+. -=...++.|+++|+.|+-- |.-||+ +-+.|+.. + +.. ++ +..
T Consensus 32 yvD~fvywsh~~~~i---------Pp~~~idaAHknGV~Vlgt----i~~e~~--~~~~~~~~---l-L~~-~~---~~~ 88 (339)
T cd06547 32 YVDTFVYFSHSAVTI---------PPADWINAAHRNGVPVLGT----FIFEWT--GQVEWLED---F-LKK-DE---DGS 88 (339)
T ss_pred hhheeecccCccccC---------CCcHHHHHHHhcCCeEEEE----EEecCC--CchHHHHH---H-hcc-Cc---ccc
Confidence 367778888754320 1134588999999999743 344666 34556643 1 111 11 123
Q ss_pred HHHHHHHHHHHhhcccccccCCceEEeccccccc-ccccccCcccHHHHHHHHHHHHHc--CCCcceee
Q 003044 153 QGFTEKIVNLMKSENLFESQGGPIILSQIENEYG-AQSKLLGAAGHNYMTWAAKMAVEM--GTGVPWVM 218 (854)
Q Consensus 153 ~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg-~~~~~~~~~~~~y~~~l~~~~~~~--g~~vp~~~ 218 (854)
.++.++|++..+.+.+ .| +.+-+||..+ .. ....-.++++.|++.+++. +..|-||.
T Consensus 89 ~~~a~kLv~lak~yGf----DG--w~iN~E~~~~~~~---~~~~l~~F~~~L~~~~~~~~~~~~v~WYD 148 (339)
T cd06547 89 FPVADKLVEVAKYYGF----DG--WLINIETELGDAE---KAKRLIAFLRYLKAKLHENVPGSLVIWYD 148 (339)
T ss_pred hHHHHHHHHHHHHhCC----Cc--eEeeeeccCCcHH---HHHHHHHHHHHHHHHHhhcCCCcEEEEEe
Confidence 5678888888885554 33 8888999873 21 1123456777777777664 45566774
No 121
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=46.19 E-value=67 Score=34.80 Aligned_cols=65 Identities=14% Similarity=0.274 Sum_probs=48.8
Q ss_pred CHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCce--eeccc--chHHHHHHHHHHcCCEEEEecCcee
Q 003044 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNY--NFEGR--YDLVRFIKTIQKAGLYAHLRIGPYV 120 (854)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~y--df~g~--~dl~~fl~la~~~gL~vilrpGPyi 120 (854)
..+..++.++++++.||-.=.+.+=+...+. .+.| +|... -|..++++..+++|++|++..=|+|
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFVLDDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEEECcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 6778899999999999985555554444332 3555 44322 3899999999999999999988877
No 122
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=45.98 E-value=92 Score=38.64 Aligned_cols=125 Identities=13% Similarity=0.097 Sum_probs=71.7
Q ss_pred EeEEEEEEeeCCC-CC----HhHHHHHHHHHHHCCCCEEE---------------eccccCccCCCCCceeecccchHHH
Q 003044 41 RRILFSGSIHYPR-ST----PDMWEDLIQKAKDGGLDVIE---------------TYVFWNVHEPSPGNYNFEGRYDLVR 100 (854)
Q Consensus 41 ~~~~~sg~~Hy~r-~~----~~~W~~~l~k~ka~G~N~V~---------------~yv~Wn~hEp~~G~ydf~g~~dl~~ 100 (854)
+.+++...+-|-- .. .+.-...|+.+|++|+|||- .|++| -|= ||+-|. +++
T Consensus 313 ~~r~~h~dld~vyd~dp~qq~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~-~~l--p~r~d~-----f~~ 384 (671)
T PRK14582 313 PQRVMHIDLDYVYDENPQQQDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPN-RLL--PMRADL-----FNR 384 (671)
T ss_pred CEEEEEeccccccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCc-ccc--ccccCC-----cCH
Confidence 4455555444432 22 35577889999999999996 45567 333 333331 112
Q ss_pred -HHHHHHHcCCEEEEecCceeee---------ecCCCCCCcccccCCCeEeecCChhHHHHHHHHHHHHHHHHhhccccc
Q 003044 101 -FIKTIQKAGLYAHLRIGPYVCA---------EWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFE 170 (854)
Q Consensus 101 -fl~la~~~gL~vilrpGPyi~a---------Ew~~GGlP~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~ 170 (854)
...++.+.|+.|..+-.||-.. +++..+-|.... |+-..| =.+|..++++|++.|..-|+.+
T Consensus 385 ~aw~l~~r~~v~v~AWmp~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~r--l~P~~pe~r~~i~~i~~dla~~---- 456 (671)
T PRK14582 385 VAWQLRTRAGVNVYAWMPVLSFDLDPTLPRVKRLDTGEGKAQIH--PEQYRR--LSPFDDRVRAQVGMLYEDLAGH---- 456 (671)
T ss_pred HHHHHHHhhCCEEEEeccceeeccCCCcchhhhccccCCccccC--CCCCcC--CCCCCHHHHHHHHHHHHHHHHh----
Confidence 2355889999999999998532 111111111111 000112 1347788999999999888853
Q ss_pred ccCCceEEeccccc
Q 003044 171 SQGGPIILSQIENE 184 (854)
Q Consensus 171 ~~gGpII~~QiENE 184 (854)
.+|=++|..-+
T Consensus 457 ---~~~dGilf~Dd 467 (671)
T PRK14582 457 ---AAFDGILFHDD 467 (671)
T ss_pred ---CCCceEEeccc
Confidence 24555555444
No 123
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=45.63 E-value=30 Score=42.95 Aligned_cols=55 Identities=20% Similarity=0.373 Sum_probs=36.8
Q ss_pred HHHHHHHCCCCEEEe-ccccCccC---CCCC-----cee----------e---cccchHHHHHHHHHHcCCEEEEec
Q 003044 62 LIQKAKDGGLDVIET-YVFWNVHE---PSPG-----NYN----------F---EGRYDLVRFIKTIQKAGLYAHLRI 116 (854)
Q Consensus 62 ~l~k~ka~G~N~V~~-yv~Wn~hE---p~~G-----~yd----------f---~g~~dl~~fl~la~~~gL~vilrp 116 (854)
.|.-+|++|+|+|+. .|+=...+ ...| -|| | ....++.++++.|+++||.|||..
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 377899999999996 45411111 1111 011 1 124689999999999999999985
No 124
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=43.59 E-value=34 Score=45.26 Aligned_cols=56 Identities=30% Similarity=0.474 Sum_probs=39.0
Q ss_pred HHHHHHHHCCCCEEEe-ccccCccCCC---CC-----cee----------ec--ccchHHHHHHHHHHcCCEEEEec
Q 003044 61 DLIQKAKDGGLDVIET-YVFWNVHEPS---PG-----NYN----------FE--GRYDLVRFIKTIQKAGLYAHLRI 116 (854)
Q Consensus 61 ~~l~k~ka~G~N~V~~-yv~Wn~hEp~---~G-----~yd----------f~--g~~dl~~fl~la~~~gL~vilrp 116 (854)
..|.-+|++|+|+|+. .|+=...|.. .| -|| |. +..++.++++.|+++||.|||..
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 3466899999999996 5653222211 11 021 23 56789999999999999999984
No 125
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=43.41 E-value=46 Score=45.16 Aligned_cols=60 Identities=23% Similarity=0.359 Sum_probs=46.3
Q ss_pred CHhHHHHHHHHHHHCCCCEEEec-cccCccCCCCCc---e----------eecccchHHHHHHHHHHcCCEEEEecCc
Q 003044 55 TPDMWEDLIQKAKDGGLDVIETY-VFWNVHEPSPGN---Y----------NFEGRYDLVRFIKTIQKAGLYAHLRIGP 118 (854)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~y-v~Wn~hEp~~G~---y----------df~g~~dl~~fl~la~~~gL~vilrpGP 118 (854)
+-+.|.+.|.-+|++|+|+|-+- +| +..+|. | .|.+..++.+|++.|+++||.|||..=|
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~----~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPIL----KARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCc----CCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 66779999999999999999863 33 222221 2 2456789999999999999999998644
No 126
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=43.32 E-value=50 Score=41.94 Aligned_cols=63 Identities=22% Similarity=0.259 Sum_probs=46.6
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEec-cccCccCCCCC------cee-------ecccchHHHHHHHHHHcCCEEEEecCce
Q 003044 54 STPDMWEDLIQKAKDGGLDVIETY-VFWNVHEPSPG------NYN-------FEGRYDLVRFIKTIQKAGLYAHLRIGPY 119 (854)
Q Consensus 54 ~~~~~W~~~l~k~ka~G~N~V~~y-v~Wn~hEp~~G------~yd-------f~g~~dl~~fl~la~~~gL~vilrpGPy 119 (854)
.+-+.+.+.|.-++++|+|+|-.- ++ +..+| ..| |.+..++.+|++.|+++||.|||..=|-
T Consensus 17 ~tf~~~~~~l~YL~~LGis~IyLsPi~----~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~N 92 (879)
T PRK14511 17 FTFDDAAELVPYFADLGVSHLYLSPIL----AARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPN 92 (879)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECcCc----cCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 355679999999999999999863 43 11122 112 3466899999999999999999987544
Q ss_pred e
Q 003044 120 V 120 (854)
Q Consensus 120 i 120 (854)
=
T Consensus 93 H 93 (879)
T PRK14511 93 H 93 (879)
T ss_pred c
Confidence 3
No 127
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=43.24 E-value=96 Score=36.30 Aligned_cols=94 Identities=19% Similarity=0.302 Sum_probs=56.8
Q ss_pred CHhHHHHHHHHHHHCCCCEEEe-ccccCccCC----CCCceeec-----cc-----chHHHHHHHHH-HcCCEEEEecCc
Q 003044 55 TPDMWEDLIQKAKDGGLDVIET-YVFWNVHEP----SPGNYNFE-----GR-----YDLVRFIKTIQ-KAGLYAHLRIGP 118 (854)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~-yv~Wn~hEp----~~G~ydf~-----g~-----~dl~~fl~la~-~~gL~vilrpGP 118 (854)
+-+.|+++|+.++++|.|+|.. .+---...- ..++..|+ .. .++.+++..++ ++||.++...
T Consensus 20 ~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~Dv-- 97 (423)
T PF14701_consen 20 PFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDV-- 97 (423)
T ss_pred CHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEE--
Confidence 5568999999999999999984 222111000 11222221 11 38999998875 7999977653
Q ss_pred eeeeecCCCCC-CcccccCCCeEeecCChhHHHHHHH
Q 003044 119 YVCAEWNFGGF-PVWLKYVPGISFRTDNEPFKRAMQG 154 (854)
Q Consensus 119 yi~aEw~~GGl-P~WL~~~p~~~~Rt~d~~y~~~~~~ 154 (854)
=|+.-.. =.||.+.|+.-.-..+.++|+.+-.
T Consensus 98 ----V~NHtA~nS~Wl~eHPEagYN~~nsPHL~pA~e 130 (423)
T PF14701_consen 98 ----VLNHTANNSPWLREHPEAGYNLENSPHLRPAYE 130 (423)
T ss_pred ----eeccCcCCChHHHhCcccccCCCCCcchhhHHH
Confidence 1333222 4699998875444445556655433
No 128
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=42.97 E-value=49 Score=37.03 Aligned_cols=65 Identities=14% Similarity=0.243 Sum_probs=48.3
Q ss_pred CHhHHHHHHHHHHHCCCCEEEeccccCccCCCCC--ceeecccc--hHHHHHHHHHHcCCEEEEecCcee
Q 003044 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPG--NYNFEGRY--DLVRFIKTIQKAGLYAHLRIGPYV 120 (854)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G--~ydf~g~~--dl~~fl~la~~~gL~vilrpGPyi 120 (854)
..+.-++.++++++.||-.=.+.+=|.... ..+ .|+|.-.+ |..+|++..+++|++|++..=|+|
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v 90 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTF 90 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCc
Confidence 677788999999999887655444444332 234 67666433 899999999999999998876766
No 129
>PRK12677 xylose isomerase; Provisional
Probab=41.78 E-value=1.4e+02 Score=34.45 Aligned_cols=88 Identities=15% Similarity=0.182 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHCCCCEEEec----cccCccCCCCCceeecccchHHHHHHHHHHcCCEEE-EecCceeeeecCCCCCCcc
Q 003044 58 MWEDLIQKAKDGGLDVIETY----VFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAH-LRIGPYVCAEWNFGGFPVW 132 (854)
Q Consensus 58 ~W~~~l~k~ka~G~N~V~~y----v~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vi-lrpGPyi~aEw~~GGlP~W 132 (854)
.+++.+++++++|+..|+.. ++|... +.+-...+.++.++++++||.|. +-|.-|.+..+..|
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~-------~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g----- 99 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHDDDLVPFGAT-------DAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKDG----- 99 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecccccCCCCCC-------hhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccCC-----
Confidence 47899999999999999883 122111 11111358899999999999976 44432211111111
Q ss_pred cccCCCeEeecCChhHHHHHHHHHHHHHHHHh
Q 003044 133 LKYVPGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (854)
Q Consensus 133 L~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 164 (854)
.+-+.|+..++...+.+.+-++.-+
T Consensus 100 -------~lts~d~~~R~~Ai~~~~r~IdlA~ 124 (384)
T PRK12677 100 -------AFTSNDRDVRRYALRKVLRNIDLAA 124 (384)
T ss_pred -------cCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2345566666665555555555555
No 130
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=41.76 E-value=1.3e+02 Score=33.40 Aligned_cols=59 Identities=14% Similarity=0.095 Sum_probs=44.3
Q ss_pred CHhHHHHHHHHHHHCCCCEEEeccc----cCcc-CCC--CCceeecccchHHHHHHHHHHcCCEEEEec
Q 003044 55 TPDMWEDLIQKAKDGGLDVIETYVF----WNVH-EPS--PGNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (854)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv~----Wn~h-Ep~--~G~ydf~g~~dl~~fl~la~~~gL~vilrp 116 (854)
+.+.-.+.++.|...|+|.+..|+- +.-+ |.. +|.|.- .++.++++.|++.|+.||-.+
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~---~ei~ei~~yA~~~gI~vIPei 80 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTK---EEIREIDDYAAELGIEVIPLI 80 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCH---HHHHHHHHHHHHcCCEEEecC
Confidence 5678889999999999999998752 3222 111 344443 499999999999999999664
No 131
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=41.59 E-value=55 Score=33.69 Aligned_cols=89 Identities=17% Similarity=0.310 Sum_probs=56.2
Q ss_pred EEEEeeCCCC-----CHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCcee--ecc-cchHHHHHHHHHHcCCEEEEec
Q 003044 45 FSGSIHYPRS-----TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYN--FEG-RYDLVRFIKTIQKAGLYAHLRI 116 (854)
Q Consensus 45 ~sg~~Hy~r~-----~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~yd--f~g-~~dl~~fl~la~~~gL~vilrp 116 (854)
.-|.+||++. +.++.+.-++.++..++.. ...|--.|..++.+. .+- ...+.+|++..+++|.++++-.
T Consensus 54 ~~G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~---~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt 130 (196)
T cd06416 54 STDVYFFPCINCCGSAAGQVQTFLQYLKANGIKY---GTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYS 130 (196)
T ss_pred ccceEEEecCCCCCCHHHHHHHHHHHHHhCCCce---eEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEc
Confidence 3499999864 4677888888888865532 112334444334322 111 1468899999999999999988
Q ss_pred Cceeeee----c---CCCCCCcccccC
Q 003044 117 GPYVCAE----W---NFGGFPVWLKYV 136 (854)
Q Consensus 117 GPyi~aE----w---~~GGlP~WL~~~ 136 (854)
+++--.. . +...+|.|+.+.
T Consensus 131 ~~~~w~~~~~~~~~~~~~~ypLWiA~Y 157 (196)
T cd06416 131 SQYDWSQIFGSSYTCNFSSLPLWYAHY 157 (196)
T ss_pred CcchhccccCCCcCCCcCCCceEecCC
Confidence 8763111 1 145688898763
No 132
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=41.03 E-value=57 Score=40.05 Aligned_cols=76 Identities=14% Similarity=0.259 Sum_probs=53.8
Q ss_pred CHhHHHHHHHHHHHCCCCEEEec-cc-----cC--ccCCCCCceee---------cccchHHHHHHHHHHcCCEEEEec-
Q 003044 55 TPDMWEDLIQKAKDGGLDVIETY-VF-----WN--VHEPSPGNYNF---------EGRYDLVRFIKTIQKAGLYAHLRI- 116 (854)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~y-v~-----Wn--~hEp~~G~ydf---------~g~~dl~~fl~la~~~gL~vilrp- 116 (854)
.+..|+ .++.+|+++|-+- ++ |. .---..|-||- ....|++++++.|+++||+||+..
T Consensus 76 ~~~~wd----yL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 76 DDALWK----ALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred ChHHHH----HHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 567775 6788999999862 33 43 22222455653 334699999999999999999764
Q ss_pred -------CceeeeecCCCCCCcccc
Q 003044 117 -------GPYVCAEWNFGGFPVWLK 134 (854)
Q Consensus 117 -------GPyi~aEw~~GGlP~WL~ 134 (854)
-||.-||.+.+-+|.|.+
T Consensus 152 pnHTs~ghdF~lAr~~~~~Y~g~Y~ 176 (688)
T TIGR02455 152 PAHTGKGADFRLAELAHGDYPGLYH 176 (688)
T ss_pred CCCCCCCcchHHHhhcCCCCCCcee
Confidence 257778888887888774
No 133
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=40.49 E-value=1.2e+02 Score=28.87 Aligned_cols=70 Identities=17% Similarity=0.312 Sum_probs=42.2
Q ss_pred EEEEEEEecCCCCcccccCCCCceEEeCCcceEEEEEECCEEEEEEEcccc-----cceeEEEeeeeccCC-CCEEEEEE
Q 003044 471 YLWYITSVDIGSSESFLHGGELPTLIVQSTGHALHIFINGQLSGSAFGTRE-----ARRFMYTGKVNLRAG-RNKIALLS 544 (854)
Q Consensus 471 Yl~Y~t~i~~~~~~~~~~~g~~~~L~i~~~~D~~~VfVng~~~G~~~~~~~-----~~~~~~~~~i~l~~g-~n~L~ILv 544 (854)
.+.++..|..+.++.+ ++.+. ..|.+.+||||+.+-...+... .........+.|.+| .+.|.|..
T Consensus 47 ~~~~~G~~~~~~~G~y-------~f~~~-~~d~~~l~idg~~vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y 118 (145)
T PF07691_consen 47 SVRWTGYFKPPETGTY-------TFSLT-SDDGARLWIDGKLVIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEY 118 (145)
T ss_dssp EEEEEEEEEESSSEEE-------EEEEE-ESSEEEEEETTEEEEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEE
T ss_pred EEEEEEEEecccCceE-------EEEEE-ecccEEEEECCEEEEcCCccccccccccccceEEEEEEeeCCeeEEEEEEE
Confidence 5668888887655532 33333 5788999999999976654211 001222334556554 67888877
Q ss_pred eccC
Q 003044 545 VAVG 548 (854)
Q Consensus 545 en~G 548 (854)
.+.+
T Consensus 119 ~~~~ 122 (145)
T PF07691_consen 119 FNRG 122 (145)
T ss_dssp EECS
T ss_pred EECC
Confidence 6655
No 134
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=40.41 E-value=66 Score=35.75 Aligned_cols=59 Identities=25% Similarity=0.349 Sum_probs=40.5
Q ss_pred CHhHHHHHHHHHHHCCCCEEEeccc---cCccCCCCC--------ceeecccchHHHHHHHHHHcCCEEEEec
Q 003044 55 TPDMWEDLIQKAKDGGLDVIETYVF---WNVHEPSPG--------NYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (854)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv~---Wn~hEp~~G--------~ydf~g~~dl~~fl~la~~~gL~vilrp 116 (854)
.+..-..+++.+|..|+|++-+=+= =++.=|... +=.| .|+.-||+-|+|.|||+|.|+
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f---~Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKF---KDIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhccccc---cccHHHHHHHHhcCeEEEEEE
Confidence 4566778999999999998865221 011111111 1123 389999999999999999996
No 135
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=39.59 E-value=64 Score=36.40 Aligned_cols=68 Identities=4% Similarity=0.052 Sum_probs=50.8
Q ss_pred CHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeeccc--chHHHHHHHHHHcCCEEEEecCceeeee
Q 003044 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGR--YDLVRFIKTIQKAGLYAHLRIGPYVCAE 123 (854)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~--~dl~~fl~la~~~gL~vilrpGPyi~aE 123 (854)
..+.-++.++++++.||..=.+.+=+.+ ....+.|+|.-. -|..+|++..++.|++|++..=|+|+.+
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~ 91 (339)
T cd06603 22 DQEDVKEVDAGFDEHDIPYDVIWLDIEH-TDGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRD 91 (339)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEChHH-hCCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 6777889999999999876555443221 124456776543 3899999999999999999988988753
No 136
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=39.28 E-value=1.4e+02 Score=31.94 Aligned_cols=96 Identities=13% Similarity=0.071 Sum_probs=55.5
Q ss_pred CCceeec-ccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCeEeecCChhHHHHHHHHHHHHHHHHhh
Q 003044 87 PGNYNFE-GRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKS 165 (854)
Q Consensus 87 ~G~ydf~-g~~dl~~fl~la~~~gL~vilrpGPyi~aEw~~GGlP~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~ 165 (854)
.|...+. +..++..+++.|++.|++|++..|= |..+. +. .+ ..++. .-+++.+.|++.+++
T Consensus 36 ~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sigg-----~~~~~---~~----~~---~~~~~---~r~~fi~~lv~~~~~ 97 (253)
T cd06545 36 NGTLNANPVRSELNSVVNAAHAHNVKILISLAG-----GSPPE---FT----AA---LNDPA---KRKALVDKIINYVVS 97 (253)
T ss_pred CCeEEecCcHHHHHHHHHHHHhCCCEEEEEEcC-----CCCCc---ch----hh---hcCHH---HHHHHHHHHHHHHHH
Confidence 5666664 3457889999999999999999761 22111 10 01 12333 235688888888886
Q ss_pred cccccccCCceEEecccccccccccccCcccHHHHHHHHHHHHHcC
Q 003044 166 ENLFESQGGPIILSQIENEYGAQSKLLGAAGHNYMTWAAKMAVEMG 211 (854)
Q Consensus 166 ~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g 211 (854)
+++ =++.|+=|+.... ...-..+++.|++.+.+.|
T Consensus 98 ~~~--------DGIdiDwE~~~~~---~~~~~~fv~~Lr~~l~~~~ 132 (253)
T cd06545 98 YNL--------DGIDVDLEGPDVT---FGDYLVFIRALYAALKKEG 132 (253)
T ss_pred hCC--------CceeEEeeccCcc---HhHHHHHHHHHHHHHhhcC
Confidence 654 2455666665321 1112345555666665544
No 137
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=39.16 E-value=1.1e+02 Score=33.87 Aligned_cols=108 Identities=14% Similarity=0.212 Sum_probs=68.5
Q ss_pred EEEEEEeeCCCCC---HhHH-HHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCEEEEecCc
Q 003044 43 ILFSGSIHYPRST---PDMW-EDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGP 118 (854)
Q Consensus 43 ~~~sg~~Hy~r~~---~~~W-~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vilrpGP 118 (854)
+-+++..||..-| .... -++|++-.++|.+.+-|-.+ ||.+ .+.+|++.|++.|+.+=+-||.
T Consensus 130 f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~~----------Fd~~---~~~~f~~~~~~~gi~~PIi~GI 196 (281)
T TIGR00677 130 FCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIITQLF----------YDVD---NFLKFVNDCRAIGIDCPIVPGI 196 (281)
T ss_pred eEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeeccce----------ecHH---HHHHHHHHHHHcCCCCCEEeec
Confidence 5678888876532 2222 23555444699999998554 3444 7889999999997765445554
Q ss_pred eee---------eecCCCCCCcccccCCCeEeecCChhHHHHHHHHHHHHHHHHh
Q 003044 119 YVC---------AEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (854)
Q Consensus 119 yi~---------aEw~~GGlP~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 164 (854)
.-+ +||..--+|.|+.+.=. ....+++...+.--++..++++.+.
T Consensus 197 ~pi~s~~~~~~~~~~~Gi~vP~~l~~~l~-~~~~~~~~~~~~gi~~a~~~~~~l~ 250 (281)
T TIGR00677 197 MPINNYASFLRRAKWSKTKIPQEIMSRLE-PIKDDDEAVRDYGIELIVEMCQKLL 250 (281)
T ss_pred cccCCHHHHHHHHhcCCCCCCHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHH
Confidence 333 57777778999986210 0123334455666677777777777
No 138
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=38.73 E-value=66 Score=35.95 Aligned_cols=67 Identities=15% Similarity=0.207 Sum_probs=48.2
Q ss_pred CHhHHHHHHHHHHHCCCCEEEeccccCccCC-----CCCceeeccc--chHHHHHHHHHHcCCEEEEecCceee
Q 003044 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEP-----SPGNYNFEGR--YDLVRFIKTIQKAGLYAHLRIGPYVC 121 (854)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-----~~G~ydf~g~--~dl~~fl~la~~~gL~vilrpGPyi~ 121 (854)
..+..++.++++++.||-.=.+.+=+.++.. .-|.|+|.-. -|..++++..+++|++|++..=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCccc
Confidence 5777899999999999875554443222321 2345666533 38999999999999999998777764
No 139
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=38.73 E-value=38 Score=34.41 Aligned_cols=22 Identities=27% Similarity=0.625 Sum_probs=18.7
Q ss_pred EEeeCCCccEEEEECCeeeeee
Q 003044 638 ALDMEGMGKGQIWINGQSVGRY 659 (854)
Q Consensus 638 ~Ld~~g~gKG~vwVNG~nLGRY 659 (854)
.|.+++.|+=.+||||+.+|+-
T Consensus 7 ~l~isa~g~Y~l~vNG~~V~~~ 28 (172)
T PF08531_consen 7 RLYISALGRYELYVNGERVGDG 28 (172)
T ss_dssp EEEEEEESEEEEEETTEEEEEE
T ss_pred EEEEEeCeeEEEEECCEEeeCC
Confidence 4677788888999999999975
No 140
>PRK03705 glycogen debranching enzyme; Provisional
Probab=38.34 E-value=48 Score=41.00 Aligned_cols=55 Identities=27% Similarity=0.398 Sum_probs=36.7
Q ss_pred HHHHHHHCCCCEEEe-ccccCccCCCC---C-----cee----------ecc-----cchHHHHHHHHHHcCCEEEEec
Q 003044 62 LIQKAKDGGLDVIET-YVFWNVHEPSP---G-----NYN----------FEG-----RYDLVRFIKTIQKAGLYAHLRI 116 (854)
Q Consensus 62 ~l~k~ka~G~N~V~~-yv~Wn~hEp~~---G-----~yd----------f~g-----~~dl~~fl~la~~~gL~vilrp 116 (854)
.|.-+|++|+|+|+. .|+=...++.. | -|| |.. ..++.++++.|+++||.|||..
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 488999999999996 45422111110 1 011 222 1479999999999999999984
No 141
>KOG3833 consensus Uncharacterized conserved protein, contains RtcB domain [Function unknown]
Probab=38.10 E-value=33 Score=38.23 Aligned_cols=53 Identities=28% Similarity=0.400 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCE--EE-Eec
Q 003044 58 MWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLY--AH-LRI 116 (854)
Q Consensus 58 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~--vi-lrp 116 (854)
.|++.+.+++..|+ +|+..-+--..|..|+.|. |+.+.+++|...||- +| |||
T Consensus 444 ~~~sV~D~L~~~~I-~iR~aSpklvmEEAPesYK-----dVtdVVdtc~~aGiskK~~klrP 499 (505)
T KOG3833|consen 444 THESVLDKLRSRGI-AIRVASPKLVMEEAPESYK-----DVTDVVDTCDAAGISKKAIKLRP 499 (505)
T ss_pred cHHHHHHHHHhCCe-EEEeCCccchhhhCchhhh-----hHHHHhhhhhhcccchhhhcccc
Confidence 49999999999998 6788888889999999987 999999999999996 33 776
No 142
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=38.07 E-value=79 Score=32.10 Aligned_cols=55 Identities=24% Similarity=0.282 Sum_probs=30.4
Q ss_pred ceEEeCCcceEEEEEECCEEEEEEEc-----ccccce--eEEEeeeeccCCCCEEEEEEeccC
Q 003044 493 PTLIVQSTGHALHIFINGQLSGSAFG-----TREARR--FMYTGKVNLRAGRNKIALLSVAVG 548 (854)
Q Consensus 493 ~~L~i~~~~D~~~VfVng~~~G~~~~-----~~~~~~--~~~~~~i~l~~g~n~L~ILven~G 548 (854)
..|.|.... +..+||||+.+|...- ...... .++++.--|+.|.|+|.|++-+-.
T Consensus 6 A~l~isa~g-~Y~l~vNG~~V~~~~l~P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~lg~gw 67 (172)
T PF08531_consen 6 ARLYISALG-RYELYVNGERVGDGPLAPGWTDYDKRVYYQTYDVTPYLRPGENVIAVWLGNGW 67 (172)
T ss_dssp -EEEEEEES-EEEEEETTEEEEEE--------BTTEEEEEEEE-TTT--TTEEEEEEEEEE--
T ss_pred EEEEEEeCe-eEEEEECCEEeeCCccccccccCCCceEEEEEeChHHhCCCCCEEEEEEeCCc
Confidence 356665543 5579999999987541 111111 233433347889999999997644
No 143
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=37.97 E-value=66 Score=36.34 Aligned_cols=74 Identities=12% Similarity=0.224 Sum_probs=54.2
Q ss_pred eeCCCC---CHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeeccc--chH--HHHHHHHHHcCCEEEEecCceee
Q 003044 49 IHYPRS---TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGR--YDL--VRFIKTIQKAGLYAHLRIGPYVC 121 (854)
Q Consensus 49 ~Hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~--~dl--~~fl~la~~~gL~vilrpGPyi~ 121 (854)
+|..|. +.+..++.++++++.||..=.+.+=+.++. ..+.|+|... -|. .++++..++.|++|++..=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~ 91 (339)
T cd06602 13 FHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMD-RRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAIS 91 (339)
T ss_pred hHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECccccc-CccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccc
Confidence 455553 678889999999999987655544333332 2466766643 377 99999999999999999888887
Q ss_pred ee
Q 003044 122 AE 123 (854)
Q Consensus 122 aE 123 (854)
.+
T Consensus 92 ~~ 93 (339)
T cd06602 92 AN 93 (339)
T ss_pred cC
Confidence 53
No 144
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=37.75 E-value=56 Score=42.70 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=19.4
Q ss_pred chHHHHHHHHHHcCCEEEEec
Q 003044 96 YDLVRFIKTIQKAGLYAHLRI 116 (854)
Q Consensus 96 ~dl~~fl~la~~~gL~vilrp 116 (854)
.++.++++.|+++||.|||..
T Consensus 555 ~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEec
Confidence 579999999999999999985
No 145
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=37.70 E-value=71 Score=36.00 Aligned_cols=59 Identities=15% Similarity=0.149 Sum_probs=46.0
Q ss_pred CHhHHHHHHHHHHHCCCCEEEeccc----cCccCC------CCC-----------ceeecccchHHHHHHHHHHcCCEEE
Q 003044 55 TPDMWEDLIQKAKDGGLDVIETYVF----WNVHEP------SPG-----------NYNFEGRYDLVRFIKTIQKAGLYAH 113 (854)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv~----Wn~hEp------~~G-----------~ydf~g~~dl~~fl~la~~~gL~vi 113 (854)
+.+...+.|+.|...++|+.+.++- |.+.-+ ..| .|. ..++.++++.|++.|+.||
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT---~~di~elv~yA~~rgI~vI 92 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYT---QEDYKDIVAYAAERHITVV 92 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCC---HHHHHHHHHHHHHcCCEEE
Confidence 8889999999999999999998873 544321 122 233 3499999999999999999
Q ss_pred Eec
Q 003044 114 LRI 116 (854)
Q Consensus 114 lrp 116 (854)
-.+
T Consensus 93 PEi 95 (329)
T cd06568 93 PEI 95 (329)
T ss_pred Eec
Confidence 664
No 146
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=36.39 E-value=48 Score=38.80 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=17.7
Q ss_pred CCCCCCcceEEEEEEeeCCCC
Q 003044 825 DPCPNVLKRLSVEAICSPTTS 845 (854)
Q Consensus 825 DPCpgt~KYL~V~Y~C~~~~~ 845 (854)
|||||--|-|+|.|+-....+
T Consensus 504 dpc~ge~K~L~I~Ytf~~q~h 524 (546)
T KOG0718|consen 504 DPCPGEPKELEIVYTFHGQRH 524 (546)
T ss_pred CCCCCCccEEEEEEEEcCceE
Confidence 999999999999998765433
No 147
>PLN02877 alpha-amylase/limit dextrinase
Probab=36.31 E-value=62 Score=41.63 Aligned_cols=21 Identities=14% Similarity=0.486 Sum_probs=18.9
Q ss_pred chHHHHHHHHHHcCCEEEEec
Q 003044 96 YDLVRFIKTIQKAGLYAHLRI 116 (854)
Q Consensus 96 ~dl~~fl~la~~~gL~vilrp 116 (854)
+++.++++.|+++||.|||..
T Consensus 466 ~efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 369999999999999999984
No 148
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=36.22 E-value=31 Score=36.21 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=17.0
Q ss_pred ceEEecCCCCeEeeEeeeccCCCC
Q 003044 760 KVHLRCSPGHTISSIKFASFGTPL 783 (854)
Q Consensus 760 ~~~L~C~~g~~Is~I~~A~YGR~~ 783 (854)
..+||=++-+.+ .|-.|.=.+|.
T Consensus 135 P~~LSGGEQQRv-aIARAiV~~P~ 157 (223)
T COG2884 135 PSQLSGGEQQRV-AIARAIVNQPA 157 (223)
T ss_pred ccccCchHHHHH-HHHHHHccCCC
Confidence 456776777778 58888888875
No 149
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=35.77 E-value=2e+02 Score=30.97 Aligned_cols=105 Identities=12% Similarity=0.091 Sum_probs=57.3
Q ss_pred CCCHhHHHHHHHHHHHCCCCEEEec--ccc--CccCCCCCceeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCC
Q 003044 53 RSTPDMWEDLIQKAKDGGLDVIETY--VFW--NVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGG 128 (854)
Q Consensus 53 r~~~~~W~~~l~k~ka~G~N~V~~y--v~W--n~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vilrpGPyi~aEw~~GG 128 (854)
.+.++.-+...+.+++.|+....+- .+. +...+.+..-+ .....+.+.|++|++.|..+|.-+|
T Consensus 53 ~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~~~i~~a~~lG~~~i~~~~----------- 120 (283)
T PRK13209 53 DWSREQRLALVNALVETGFRVNSMCLSAHRRFPLGSEDDAVRA-QALEIMRKAIQLAQDLGIRVIQLAG----------- 120 (283)
T ss_pred CCCHHHHHHHHHHHHHcCCceeEEecccccccCCCCCCHHHHH-HHHHHHHHHHHHHHHcCCCEEEECC-----------
Confidence 3467777777778889999876542 111 11111111000 0112578889999999998764321
Q ss_pred CCcccccCCCeEeecCChhHHHHHHHHHHHHHHHHhhcccccccCCceEEeccccccc
Q 003044 129 FPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYG 186 (854)
Q Consensus 129 lP~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg 186 (854)
.+.|.. ..++...+.+...++.|++..+++ | |-+.+||-.+
T Consensus 121 ~~~~~~--------~~~~~~~~~~~~~l~~l~~~A~~~-------G--V~i~iE~~~~ 161 (283)
T PRK13209 121 YDVYYE--------QANNETRRRFIDGLKESVELASRA-------S--VTLAFEIMDT 161 (283)
T ss_pred cccccc--------ccHHHHHHHHHHHHHHHHHHHHHh-------C--CEEEEeecCC
Confidence 111211 112344455556677777777643 2 4556888543
No 150
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=34.73 E-value=1.9e+02 Score=32.72 Aligned_cols=72 Identities=13% Similarity=0.202 Sum_probs=54.1
Q ss_pred eeCCCC---CHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeeccc--chHHHHHHHHHHcCCEEEEecCceee
Q 003044 49 IHYPRS---TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGR--YDLVRFIKTIQKAGLYAHLRIGPYVC 121 (854)
Q Consensus 49 ~Hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~--~dl~~fl~la~~~gL~vilrpGPyi~ 121 (854)
+|..|. ..+..++.++++++.+|-.=.+++=|.++. .-+.|.|... -|..++++..++.|+++++..=|+|.
T Consensus 13 ~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 13 FHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee
Confidence 455553 778889999999999987555554444443 3466666543 37899999999999999998888887
No 151
>COG3915 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.68 E-value=1.6e+02 Score=29.20 Aligned_cols=48 Identities=23% Similarity=0.318 Sum_probs=34.9
Q ss_pred HHHHHHHCCCCEEEeccccCccCCCCCceeeccc--chHHHHHHHHHHcCCEEEEe
Q 003044 62 LIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGR--YDLVRFIKTIQKAGLYAHLR 115 (854)
Q Consensus 62 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~--~dl~~fl~la~~~gL~vilr 115 (854)
.++.+.|.+-.|++|-.+|- .|.-.|.|- .+|-+.+. |+...+.|+.-
T Consensus 39 t~qeLeal~~~T~ete~Pw~-----~gn~rf~Gvsls~Ll~~l~-ak~tslt~iAL 88 (155)
T COG3915 39 TLQELEALPDETIETETPWT-----QGNTRFKGVSLSALLAWLG-AKQTSLTVIAL 88 (155)
T ss_pred cHHHHhcCCcceEEEecCcc-----cCceeecceeHHHHHHHhh-ccCcceEEEEe
Confidence 35677789999999999995 466778875 36666666 66666776643
No 152
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=34.47 E-value=93 Score=34.74 Aligned_cols=66 Identities=12% Similarity=0.148 Sum_probs=46.8
Q ss_pred HhHHHHHHHHHHHCCCCEEEeccccCccCC---CCCceeeccc--chHHHHHHHHHHcCCEEEEecCceee
Q 003044 56 PDMWEDLIQKAKDGGLDVIETYVFWNVHEP---SPGNYNFEGR--YDLVRFIKTIQKAGLYAHLRIGPYVC 121 (854)
Q Consensus 56 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp---~~G~ydf~g~--~dl~~fl~la~~~gL~vilrpGPyi~ 121 (854)
.+.-++.++++++.+|-+=.+.+-+.+..- ....|+|.-. -|..++++..+++|++|++..=|+|+
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~ 98 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLL 98 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 567788999999999976555543222221 1234555432 38999999999999999998877774
No 153
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=33.92 E-value=79 Score=36.75 Aligned_cols=68 Identities=15% Similarity=0.370 Sum_probs=45.7
Q ss_pred CHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeeccc--chHHHHHHHHHHcCCEEEEecCceeeee
Q 003044 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGR--YDLVRFIKTIQKAGLYAHLRIGPYVCAE 123 (854)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~--~dl~~fl~la~~~gL~vilrpGPyi~aE 123 (854)
..+...+.++.+++.|+-.=...+-..... ..+.|.|... -|..++++.+++.|+++++..-|+|.-+
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~ 110 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSND 110 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETT
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCC
Confidence 577788999999999987655544322222 3445555432 2899999999999999999988887655
No 154
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=33.84 E-value=3.5e+02 Score=29.91 Aligned_cols=119 Identities=16% Similarity=0.147 Sum_probs=80.4
Q ss_pred CHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccc
Q 003044 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLK 134 (854)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vilrpGPyi~aEw~~GGlP~WL~ 134 (854)
.-+.-+.+|+.++.-+. .|++|- +.-+-|...+.+|.+.|++|+|.+ |+.
T Consensus 61 Sa~~~~sDLe~l~~~t~-~IR~Y~--------------sDCn~le~v~pAa~~~g~kv~lGi---------------w~t 110 (305)
T COG5309 61 SADQVASDLELLASYTH-SIRTYG--------------SDCNTLENVLPAAEASGFKVFLGI---------------WPT 110 (305)
T ss_pred CHHHHHhHHHHhccCCc-eEEEee--------------ccchhhhhhHHHHHhcCceEEEEE---------------eec
Confidence 56778899999999887 999974 112357888999999999999874 222
Q ss_pred cCCCeEeecCChhHHHHHHHHHHHHHHHHhhcccccccCCceEEecccccccccccccCcccHHHHHHHHHHHHHcCCCc
Q 003044 135 YVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLLGAAGHNYMTWAAKMAVEMGTGV 214 (854)
Q Consensus 135 ~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~v 214 (854)
. ++ . ..+++ .++..+. +. ..--.|..+=|-||--...+.-....-+|+...|.+++++|.++
T Consensus 111 d--d~-------~--~~~~~---til~ay~--~~--~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~g 172 (305)
T COG5309 111 D--DI-------H--DAVEK---TILSAYL--PY--NGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDG 172 (305)
T ss_pred c--ch-------h--hhHHH---HHHHHHh--cc--CCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 2 11 1 22232 3444444 21 12237888899999643221111245789999999999999999
Q ss_pred ceeecCC
Q 003044 215 PWVMCKE 221 (854)
Q Consensus 215 p~~~~~~ 221 (854)
|..+.++
T Consensus 173 pV~T~ds 179 (305)
T COG5309 173 PVTTVDS 179 (305)
T ss_pred ceeeccc
Confidence 9988775
No 155
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=33.73 E-value=85 Score=35.10 Aligned_cols=72 Identities=11% Similarity=0.152 Sum_probs=51.4
Q ss_pred eeCCCC---CHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeeccc--chHHHHHHHHHHcCCEEEEecCceee
Q 003044 49 IHYPRS---TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGR--YDLVRFIKTIQKAGLYAHLRIGPYVC 121 (854)
Q Consensus 49 ~Hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~--~dl~~fl~la~~~gL~vilrpGPyi~ 121 (854)
+|..|. ..+..++.++++++.+|-.=.+.+=+.... ..+.|+|... -|..+|++..++.|++|++..=|+|.
T Consensus 13 ~~~sr~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~ 89 (317)
T cd06600 13 YHISRYSYYPQDKVVEVVDIMQKEGFPYDVVFLDIHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIR 89 (317)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEChhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeecccc
Confidence 344554 677889999999999987544443322222 2356666543 38999999999999999988877775
No 156
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=33.63 E-value=91 Score=34.61 Aligned_cols=60 Identities=13% Similarity=0.215 Sum_probs=47.0
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEeccc----cCccCC----------------CCCceeecccchHHHHHHHHHHcCCEEE
Q 003044 54 STPDMWEDLIQKAKDGGLDVIETYVF----WNVHEP----------------SPGNYNFEGRYDLVRFIKTIQKAGLYAH 113 (854)
Q Consensus 54 ~~~~~W~~~l~k~ka~G~N~V~~yv~----Wn~hEp----------------~~G~ydf~g~~dl~~fl~la~~~gL~vi 113 (854)
.+.+..++.|+.|...++|+++.++- |.+--+ ..|.|.-+ ++.++++.|++.|+.||
T Consensus 13 ~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~---di~elv~yA~~rgI~vi 89 (303)
T cd02742 13 LSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYA---QLKDIIEYAAARGIEVI 89 (303)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHH---HHHHHHHHHHHcCCEEE
Confidence 47888999999999999999999876 754311 12334444 99999999999999998
Q ss_pred Eec
Q 003044 114 LRI 116 (854)
Q Consensus 114 lrp 116 (854)
-.+
T Consensus 90 PEi 92 (303)
T cd02742 90 PEI 92 (303)
T ss_pred Eec
Confidence 664
No 157
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=33.48 E-value=67 Score=34.89 Aligned_cols=50 Identities=24% Similarity=0.232 Sum_probs=35.7
Q ss_pred HHHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCEEEEecC
Q 003044 62 LIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (854)
Q Consensus 62 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vilrpG 117 (854)
...++|++|++.|-+ -|..++-.|. +.+..+.+=++.|.++||.+|++.|
T Consensus 78 S~~mLkd~G~~~vii-----GHSERR~~f~-Etd~~v~~K~~~a~~~gl~pIvCiG 127 (250)
T PRK00042 78 SAEMLKDLGVKYVII-----GHSERRQYFG-ETDELVNKKVKAALKAGLTPILCVG 127 (250)
T ss_pred CHHHHHHCCCCEEEe-----CcccccCccC-cCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 345889999999988 6666655554 2233444444559999999999987
No 158
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=33.03 E-value=8.2e+02 Score=28.27 Aligned_cols=114 Identities=12% Similarity=0.167 Sum_probs=63.5
Q ss_pred HCCCCEEEecc----ccCccCCCCCceeecccchHHH--HHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCC---
Q 003044 68 DGGLDVIETYV----FWNVHEPSPGNYNFEGRYDLVR--FIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPG--- 138 (854)
Q Consensus 68 a~G~N~V~~yv----~Wn~hEp~~G~ydf~g~~dl~~--fl~la~~~gL~vilrpGPyi~aEw~~GGlP~WL~~~p~--- 138 (854)
++|+..+++.| ||+- |.+|- +..+ +-+-+-..|+.|..-| |. .|+|+...-.
T Consensus 77 ~lg~si~Rv~I~~ndfsl~-----g~~d~----w~kels~Ak~~in~g~ivfASP-------Ws---pPa~Mktt~~~ng 137 (433)
T COG5520 77 QLGFSILRVPIDSNDFSLG-----GSADN----WYKELSTAKSAINPGMIVFASP-------WS---PPASMKTTNNRNG 137 (433)
T ss_pred ccCceEEEEEecccccccC-----CCcch----hhhhcccchhhcCCCcEEEecC-------CC---CchhhhhccCcCC
Confidence 46777777766 4554 22221 1221 1222557799888876 64 8999976321
Q ss_pred ---eEee-cCChhHHHHHHHHHHHHHHHHhhcccccccCCceEEecccccccccccccCc---ccHHHHHHHHHHHHHcC
Q 003044 139 ---ISFR-TDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLLGA---AGHNYMTWAAKMAVEMG 211 (854)
Q Consensus 139 ---~~~R-t~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~---~~~~y~~~l~~~~~~~g 211 (854)
-+|| ...++|-+...+|+. .++ .+|=|+-++-|.||..... .|.. ...+.+++++|-++...
T Consensus 138 g~~g~Lk~e~Ya~yA~~l~~fv~----~m~------~nGvnlyalSVQNEPd~~p-~~d~~~wtpQe~~rF~~qyl~si~ 206 (433)
T COG5520 138 GNAGRLKYEKYADYADYLNDFVL----EMK------NNGVNLYALSVQNEPDYAP-TYDWCWWTPQEELRFMRQYLASIN 206 (433)
T ss_pred ccccccchhHhHHHHHHHHHHHH----HHH------hCCCceeEEeeccCCcccC-CCCcccccHHHHHHHHHHhhhhhc
Confidence 1333 234555444444443 344 3566888888889987532 2222 23455666666665544
No 159
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=32.80 E-value=64 Score=34.62 Aligned_cols=58 Identities=16% Similarity=0.075 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHCCCCEEEeccccCccCCCC----CceeecccchHHHHHHHHHHcCCEEEEec-Cce
Q 003044 58 MWEDLIQKAKDGGLDVIETYVFWNVHEPSP----GNYNFEGRYDLVRFIKTIQKAGLYAHLRI-GPY 119 (854)
Q Consensus 58 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~----G~ydf~g~~dl~~fl~la~~~gL~vilrp-GPy 119 (854)
.+++.++.++++|..+|.+. ..+.... -.++.. ...|.++.++|+++|+.+.+.+ +|+
T Consensus 91 ~~~~~i~~a~~lGa~~i~~~---~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~iE~~~~~ 153 (275)
T PRK09856 91 MIKLAMDMAKEMNAGYTLIS---AAHAGYLTPPNVIWGRL-AENLSELCEYAENIGMDLILEPLTPY 153 (275)
T ss_pred HHHHHHHHHHHhCCCEEEEc---CCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEecCCCC
Confidence 55667889999999998662 2232111 112221 1368889999999999999887 444
No 160
>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism]
Probab=32.67 E-value=49 Score=37.55 Aligned_cols=46 Identities=30% Similarity=0.656 Sum_probs=37.4
Q ss_pred cCCCCCceeec-c---------cchHHHHH--HHHHHcCCEEEEecCceeeeecCCCCC
Q 003044 83 HEPSPGNYNFE-G---------RYDLVRFI--KTIQKAGLYAHLRIGPYVCAEWNFGGF 129 (854)
Q Consensus 83 hEp~~G~ydf~-g---------~~dl~~fl--~la~~~gL~vilrpGPyi~aEw~~GGl 129 (854)
.|..||||.|+ | +.+..+++ +.|++.|+.+-+-|=| +.+.|+..|-
T Consensus 202 ~EvmPgQwEfqvGp~~GI~~gD~lw~aR~il~rVae~~Gviasf~pKp-~~g~WngaG~ 259 (380)
T KOG0683|consen 202 VEVMPGQWEFQVGPCEGISMGDQLWMARYILHRVAEKFGVIASFDPKP-ILGDWNGAGC 259 (380)
T ss_pred ccccCceeEEeecchhcccchhhHHHHHHHHHHHHHHhCeeEEecCCC-CCCcccCccc
Confidence 35789999995 2 36777777 8899999999999987 9999998553
No 161
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=32.56 E-value=99 Score=34.82 Aligned_cols=73 Identities=12% Similarity=0.175 Sum_probs=51.2
Q ss_pred eeCCCC---CHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeeccc--chHHHHHHHHHHcCCEEEEecCceeee
Q 003044 49 IHYPRS---TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGR--YDLVRFIKTIQKAGLYAHLRIGPYVCA 122 (854)
Q Consensus 49 ~Hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~--~dl~~fl~la~~~gL~vilrpGPyi~a 122 (854)
+|..|. +.+..++.++++++.||-.=.+.+=+.+.. .-+.|+|.-. -|..++++..+++|+++++..=|+|+.
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~ 90 (339)
T cd06604 13 YQQSRWSYYPEEEVREIADEFRERDIPCDAIYLDIDYMD-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKV 90 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECchhhC-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeC
Confidence 455553 677789999999999987544433322222 3345666533 378999999999999999988788753
No 162
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=32.13 E-value=21 Score=31.72 Aligned_cols=37 Identities=27% Similarity=0.623 Sum_probs=27.7
Q ss_pred CHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHc
Q 003044 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKA 108 (854)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~ 108 (854)
....|-.-+|.+.. .||.|..|||. +|.+||++|.|-
T Consensus 20 s~hhWLNflQaAyR--------------L~PgPS~~DF~---qLr~flk~alkT 56 (92)
T PF02228_consen 20 STHHWLNFLQAAYR--------------LQPGPSSFDFH---QLRNFLKLALKT 56 (92)
T ss_dssp THHHHHHHHHHHHH--------------SS---STTTHH---HHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHh--------------cCCCCCcccHH---HHHHHHHHHHcC
Confidence 56679888887764 48899999999 999999999864
No 163
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=31.86 E-value=70 Score=40.95 Aligned_cols=21 Identities=14% Similarity=0.445 Sum_probs=18.8
Q ss_pred chHHHHHHHHHHcCCEEEEec
Q 003044 96 YDLVRFIKTIQKAGLYAHLRI 116 (854)
Q Consensus 96 ~dl~~fl~la~~~gL~vilrp 116 (854)
.++.++++.|+++||.|||..
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV 424 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV 424 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 478899999999999999984
No 164
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=31.50 E-value=75 Score=28.43 Aligned_cols=47 Identities=15% Similarity=0.166 Sum_probs=24.8
Q ss_pred cCCceEEeccccc-cccccccc----Cc-ccHHHHHHHHHHH---HHcCCCcceee
Q 003044 172 QGGPIILSQIENE-YGAQSKLL----GA-AGHNYMTWAAKMA---VEMGTGVPWVM 218 (854)
Q Consensus 172 ~gGpII~~QiENE-yg~~~~~~----~~-~~~~y~~~l~~~~---~~~g~~vp~~~ 218 (854)
+...|.+|+|-|| .++....+ +. ....|.+||++++ |+.+-..|+..
T Consensus 7 ~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~ 62 (88)
T PF12876_consen 7 YDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTS 62 (88)
T ss_dssp -GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE-
T ss_pred CCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEe
Confidence 4458999999999 55321111 11 2355666666665 55667777643
No 165
>PLN03036 glutamine synthetase; Provisional
Probab=31.25 E-value=1.3e+02 Score=35.44 Aligned_cols=67 Identities=24% Similarity=0.450 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeec-cc---------chHHHHH--HHHHHcCCEEEEecCceeeeec
Q 003044 57 DMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFE-GR---------YDLVRFI--KTIQKAGLYAHLRIGPYVCAEW 124 (854)
Q Consensus 57 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~-g~---------~dl~~fl--~la~~~gL~vilrpGPyi~aEw 124 (854)
+.-++..+.+.++|++.-.+ .||-.||||.|. +- ..+.+++ ++|+++|+.+-.-|=|+. ++|
T Consensus 230 ~i~~~i~~a~~~~GI~Ie~~-----~~E~gpGQ~Ei~l~~~d~L~aAD~~~l~R~ivk~VA~~~Gl~ATFMPKP~~-gd~ 303 (432)
T PLN03036 230 DISDAHYKACLYAGINISGT-----NGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILERITEQAGVVLTLDPKPIE-GDW 303 (432)
T ss_pred HHHHHHHHHHHHCCCCeEEE-----EcCcCCCceEEecCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCcCC-CCc
Confidence 44455666789999998888 999999999885 21 1233333 679999999998888853 566
Q ss_pred CCCCC
Q 003044 125 NFGGF 129 (854)
Q Consensus 125 ~~GGl 129 (854)
+.-|.
T Consensus 304 ~GSGm 308 (432)
T PLN03036 304 NGAGC 308 (432)
T ss_pred CCCCc
Confidence 65554
No 166
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=30.69 E-value=1.2e+02 Score=33.45 Aligned_cols=65 Identities=15% Similarity=0.352 Sum_probs=46.7
Q ss_pred CHhHHHHHHHHHHHCCCCEEEeccc--cCccC------CCCCceeeccc--chHHHHHHHHHHcCCEEEEecCce
Q 003044 55 TPDMWEDLIQKAKDGGLDVIETYVF--WNVHE------PSPGNYNFEGR--YDLVRFIKTIQKAGLYAHLRIGPY 119 (854)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv~--Wn~hE------p~~G~ydf~g~--~dl~~fl~la~~~gL~vilrpGPy 119 (854)
+.+.-++.++++++.||-.=.+++= |.... ..-+.|+|+-. -|..++++..++.|++|++..=|+
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~ 97 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPA 97 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCC
Confidence 6777899999999999876555443 43221 12346666533 489999999999999999886444
No 167
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=30.66 E-value=1.7e+02 Score=32.33 Aligned_cols=115 Identities=18% Similarity=0.247 Sum_probs=68.1
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeec---ccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCC
Q 003044 54 STPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFE---GRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFP 130 (854)
Q Consensus 54 ~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~---g~~dl~~fl~la~~~gL~vilrpGPyi~aEw~~GGlP 130 (854)
..-+.-+.-+.-+.++|+..|-+=.-|...+ ....+||+ ...||.++++-|++.|..|+|.- + |..||-.
T Consensus 29 ~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~-~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~----~--~~~~~~~ 101 (273)
T PF10566_consen 29 ATTETQKRYIDFAAEMGIEYVLVDAGWYGWE-KDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWY----H--SETGGNV 101 (273)
T ss_dssp SSHHHHHHHHHHHHHTT-SEEEEBTTCCGS---TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEE----E--CCHTTBH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecccccccc-ccccccccccCCccCHHHHHHHHHHcCCCEEEEE----e--CCcchhh
Confidence 3567788889999999999988877787622 24467775 34699999999999999888873 2 3332221
Q ss_pred ccccc-------------CCCeEeecCChhHHHHHHHHHHHHHHHHhhcccccccCCce
Q 003044 131 VWLKY-------------VPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPI 176 (854)
Q Consensus 131 ~WL~~-------------~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpI 176 (854)
.=|.+ +.++++=--+. --+.+-+|+.+|++.-++|+|+..=.|++
T Consensus 102 ~~~~~~~~~~f~~~~~~Gv~GvKidF~~~-d~Q~~v~~y~~i~~~AA~~~LmvnfHg~~ 159 (273)
T PF10566_consen 102 ANLEKQLDEAFKLYAKWGVKGVKIDFMDR-DDQEMVNWYEDILEDAAEYKLMVNFHGAT 159 (273)
T ss_dssp HHHHCCHHHHHHHHHHCTEEEEEEE--SS-TSHHHHHHHHHHHHHHHHTT-EEEETTS-
T ss_pred HhHHHHHHHHHHHHHHcCCCEEeeCcCCC-CCHHHHHHHHHHHHHHHHcCcEEEecCCc
Confidence 11111 23333211111 12456788999999999888765545443
No 168
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=30.14 E-value=94 Score=33.58 Aligned_cols=49 Identities=24% Similarity=0.325 Sum_probs=38.3
Q ss_pred HHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCEEEEecC
Q 003044 63 IQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (854)
Q Consensus 63 l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vilrpG 117 (854)
..++|++|++.|-+ -|..++--|. +.+.++.+=++.|.++||.+|++.|
T Consensus 77 ~~mL~d~G~~~vii-----GHSERR~~f~-Et~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 77 AEMLKDAGAKYVII-----GHSERRQYFG-ETDEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred HHHHHHcCCCEEEe-----CcccccCcCC-CCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 45789999998888 5555544443 2356888889999999999999987
No 169
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=30.12 E-value=1.2e+02 Score=34.43 Aligned_cols=73 Identities=12% Similarity=0.168 Sum_probs=50.5
Q ss_pred eeCCCC---CHhHHHHHHHHHHHCCCCEEEecc----------ccCccCCC---------CCceeecc-c--chHHHHHH
Q 003044 49 IHYPRS---TPDMWEDLIQKAKDGGLDVIETYV----------FWNVHEPS---------PGNYNFEG-R--YDLVRFIK 103 (854)
Q Consensus 49 ~Hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv----------~Wn~hEp~---------~G~ydf~g-~--~dl~~fl~ 103 (854)
+|..|. ..+.-++.++++++.||..=.+++ .|+-..-. -+.++|.. . -|..+|++
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~ 92 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMID 92 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHH
Confidence 565563 577788999999999997655443 34432221 13333431 1 27999999
Q ss_pred HHHHcCCEEEEecCceee
Q 003044 104 TIQKAGLYAHLRIGPYVC 121 (854)
Q Consensus 104 la~~~gL~vilrpGPyi~ 121 (854)
..++.|++|+|..=|+|.
T Consensus 93 ~Lh~~G~kv~l~v~P~i~ 110 (340)
T cd06597 93 ELHEQGVKVLLWQIPIIK 110 (340)
T ss_pred HHHHCCCEEEEEecCccc
Confidence 999999999998888875
No 170
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=28.72 E-value=2.4e+02 Score=31.71 Aligned_cols=153 Identities=18% Similarity=0.151 Sum_probs=83.9
Q ss_pred eeEEEecCcEEECCEEeEEEEEEee-CCCCCH---hHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHH
Q 003044 26 CSVTYDRKALLINGQRRILFSGSIH-YPRSTP---DMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRF 101 (854)
Q Consensus 26 ~~v~~d~~~~~idG~~~~~~sg~~H-y~r~~~---~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~f 101 (854)
..|++-+.++.+|. .= +-++++ -+-... ..-...+...++.|.+||-.--.= .-.||..+.
T Consensus 16 lGvTl~HEHl~~~~--~~-~~~~~~~d~~~~~~~~a~~~~e~~~~~a~Gg~TIVD~T~~------------~~GRdv~~m 80 (316)
T COG1735 16 LGVTLMHEHLFIDP--YE-IAGGLKNDPYDEDDEVALAIAELKRLMARGGQTIVDATNI------------GIGRDVLKM 80 (316)
T ss_pred ccceeehhhhccch--HH-HhhcCCCCcccccHHHHHHHHHHHHHHHcCCCeEeeCCcc------------ccCcCHHHH
Confidence 45677777777775 11 112222 111111 112335666677899888642110 112699999
Q ss_pred HHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCeEeecCChhHHHHHHHHHHHHHHHHhhcccccccCCceEEecc
Q 003044 102 IKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQI 181 (854)
Q Consensus 102 l~la~~~gL~vilrpGPyi~aEw~~GGlP~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi 181 (854)
.+.+++.||.+|...|+|.-+.|+ .|+...| ++.+...+.+.++. +-.|+=|..=|
T Consensus 81 ~~vs~atglnIV~~TGfy~~~~~p-----~~~~~~~--------------i~~~ae~~v~ei~~-----Gi~gT~ikAGi 136 (316)
T COG1735 81 RRVAEATGLNIVAATGFYKAAFHP-----EYFALRP--------------IEELAEFVVKEIEE-----GIAGTGIKAGI 136 (316)
T ss_pred HHHHHHhCCcEEEeccccccccch-----hHHhhCC--------------HHHHHHHHHHHHHh-----cccCCccccce
Confidence 999999999999999999988864 6765433 34445555555551 11232222222
Q ss_pred cccccccccccCcccHHHHHHHHHHHHHc-CCCcceeecCC
Q 003044 182 ENEYGAQSKLLGAAGHNYMTWAAKMAVEM-GTGVPWVMCKE 221 (854)
Q Consensus 182 ENEyg~~~~~~~~~~~~y~~~l~~~~~~~-g~~vp~~~~~~ 221 (854)
=-|-|.+. .=.+.=.+.|+..++.. -.++|+.+-.+
T Consensus 137 Ik~~~~~~----~iTp~Eek~lrAaA~A~~~Tg~Pi~tHt~ 173 (316)
T COG1735 137 IKEAGGSP----AITPLEEKSLRAAARAHKETGAPISTHTP 173 (316)
T ss_pred eeeccCcc----cCCHHHHHHHHHHHHHhhhcCCCeEEecc
Confidence 23444421 11222234555555544 45788876553
No 171
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=27.95 E-value=98 Score=34.56 Aligned_cols=60 Identities=17% Similarity=0.220 Sum_probs=42.5
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEeccc----cCccCC------CCC---------ceeecccchHHHHHHHHHHcCCEEEE
Q 003044 54 STPDMWEDLIQKAKDGGLDVIETYVF----WNVHEP------SPG---------NYNFEGRYDLVRFIKTIQKAGLYAHL 114 (854)
Q Consensus 54 ~~~~~W~~~l~k~ka~G~N~V~~yv~----Wn~hEp------~~G---------~ydf~g~~dl~~fl~la~~~gL~vil 114 (854)
.+.+.-++.|..|...++|++..++- |.+.-+ +.| .|.- .|+.++++.|++.|+.||-
T Consensus 15 ~~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~---~di~~lv~yA~~~gI~VIP 91 (351)
T PF00728_consen 15 FSVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTK---EDIRELVAYAKERGIEVIP 91 (351)
T ss_dssp B-HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEH---HHHHHHHHHHHHTT-EEEE
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCH---HHHHHHHHHHHHcCCceee
Confidence 37888899999999999999998874 433221 122 3333 4999999999999999996
Q ss_pred ec
Q 003044 115 RI 116 (854)
Q Consensus 115 rp 116 (854)
.+
T Consensus 92 ei 93 (351)
T PF00728_consen 92 EI 93 (351)
T ss_dssp EE
T ss_pred ec
Confidence 53
No 172
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=27.82 E-value=1.7e+02 Score=24.44 Aligned_cols=43 Identities=35% Similarity=0.471 Sum_probs=32.1
Q ss_pred HHHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCEEEE
Q 003044 59 WEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHL 114 (854)
Q Consensus 59 W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vil 114 (854)
.++.++++|+.|++.|.+= -|. ++. ...+|.+++++.||.||.
T Consensus 17 ~~~~~~~a~~~g~~~v~iT----Dh~------~~~---~~~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 17 PEELVKRAKELGLKAIAIT----DHG------NLF---GAVEFYKAAKKAGIKPII 59 (67)
T ss_pred HHHHHHHHHHcCCCEEEEe----eCC------ccc---CHHHHHHHHHHcCCeEEE
Confidence 6688999999999998762 121 222 467888999999998764
No 173
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=27.80 E-value=2.3e+02 Score=30.99 Aligned_cols=108 Identities=18% Similarity=0.242 Sum_probs=67.2
Q ss_pred eEEEEEEeeCCCC----CHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCEEEEecC
Q 003044 42 RILFSGSIHYPRS----TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (854)
Q Consensus 42 ~~~~sg~~Hy~r~----~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vilrpG 117 (854)
.+.+++..|+.+- +.+.=.++|++-.++|.+.+-|-.+ ||.+ .+.+|++.|++.|+.+=+.+|
T Consensus 125 ~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ~~----------fd~~---~~~~~~~~~~~~gi~~PIi~G 191 (272)
T TIGR00676 125 DFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAITQLF----------FDND---DYYRFVDRCRAAGIDVPIIPG 191 (272)
T ss_pred CeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeeccc----------cCHH---HHHHHHHHHHHcCCCCCEecc
Confidence 4678888877653 2222235566667899998888444 4444 789999999999766544443
Q ss_pred --cee-------eeecCCCCCCcccccC-CCeEeecCChhHHHHHHHHHHHHHHHHh
Q 003044 118 --PYV-------CAEWNFGGFPVWLKYV-PGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (854)
Q Consensus 118 --Pyi-------~aEw~~GGlP~WL~~~-p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 164 (854)
|-. .++|..-.+|.|+.+. .. ...+....+++--++..+++..+.
T Consensus 192 i~p~~s~k~~~~~~~~~Gv~vP~~~~~~l~~--~~~~~~~~~~~gi~~~~~~~~~l~ 246 (272)
T TIGR00676 192 IMPITNFKQLLRFAERCGAEIPAWLVKRLEK--YDDDPEEVRAVGIEYATDQCEDLI 246 (272)
T ss_pred cCCcCCHHHHHHHHhccCCCCCHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHH
Confidence 322 2336666788888762 11 111223455566667777777766
No 174
>PRK09267 flavodoxin FldA; Validated
Probab=27.79 E-value=4.3e+02 Score=26.22 Aligned_cols=74 Identities=7% Similarity=0.054 Sum_probs=47.8
Q ss_pred ECCEEeEEEEEEeeCCCCCHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCEEE
Q 003044 37 INGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAH 113 (854)
Q Consensus 37 idG~~~~~~sg~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vi 113 (854)
+.....++++...|....++..|.+-+.+++...++-..+.+|= ......-.-.|. .-+..+-+++++.|..++
T Consensus 44 l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k~vaifg-~g~~~~~~~~~~--~~~~~l~~~l~~~g~~~v 117 (169)
T PRK09267 44 FEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSGKKVALFG-LGDQEDYAEYFC--DAMGTLYDIVEPRGATIV 117 (169)
T ss_pred HhhCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCCCCEEEEEe-cCCCCcchHHHH--HHHHHHHHHHHHCCCEEE
Confidence 44556788998898877778889988888877777766666662 221111001121 235667777888897654
No 175
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=27.68 E-value=1.4e+02 Score=33.02 Aligned_cols=59 Identities=20% Similarity=0.286 Sum_probs=43.1
Q ss_pred CHhHHHHHHHHHHHCCCCEEEeccccCccCC--CCC--ceeecccchHHHHHHHHHHcCCEEEEec
Q 003044 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEP--SPG--NYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (854)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp--~~G--~ydf~g~~dl~~fl~la~~~gL~vilrp 116 (854)
.++..++.++++++.|.+.|-+|.-+..-.+ .++ .++- ..+.+.+++|+++|+.|.+-.
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~---e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSE---EELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCH---HHHHHHHHHHHHcCCEEEEEe
Confidence 4788999999999999999999874422111 122 2332 378899999999999887663
No 176
>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) have been found in Bacteroides fragilis. in Butyrivibrio fibrisolvens. It is a hexamer of identical chains and in some protozoa. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006807 nitrogen compound metabolic process; PDB: 2J9I_E 3ZXV_D 1HTQ_D 1HTO_F 2BVC_F 2WGS_G 3ZXR_B 2WHI_D 3NG0_A 1LGR_C ....
Probab=27.66 E-value=1.2e+02 Score=32.83 Aligned_cols=61 Identities=26% Similarity=0.459 Sum_probs=43.8
Q ss_pred CHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeec-----cc-----chHHHHH--HHHHHcCCEEEEecCcee
Q 003044 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFE-----GR-----YDLVRFI--KTIQKAGLYAHLRIGPYV 120 (854)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~-----g~-----~dl~~fl--~la~~~gL~vilrpGPyi 120 (854)
..+..++.++.+.++|+++-.. .||-.||||.+. +. ..+.+++ ++|+++||.+-.-|=|+.
T Consensus 67 ~~~~~~~i~~~l~~~Gi~ve~~-----h~E~gpgQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~atFmpKP~~ 139 (259)
T PF00120_consen 67 GEDFLEEIVDALEQAGIPVEQI-----HHEVGPGQYEINLGPCDPLEAADNLVLFKEIIKEVARKHGLTATFMPKPFS 139 (259)
T ss_dssp THHHHHHHHHHHHHCT--EEEE-----EEESSTTEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEEE-SSSSST
T ss_pred HHHHHHHHHHHHHHhhcccccc-----ccccchHhhccccccCcHHHHHHHHHHHHHHHHHHHHHcCCceeeeccccC
Confidence 4677888999999999998888 899999998764 11 1222222 679999999999887764
No 177
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=27.55 E-value=2.1e+02 Score=35.23 Aligned_cols=110 Identities=14% Similarity=0.163 Sum_probs=74.6
Q ss_pred CEEeEEEEEEeeCCCCCHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCEEEEecCc
Q 003044 39 GQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGP 118 (854)
Q Consensus 39 G~~~~~~sg~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vilrpGP 118 (854)
+++-+.+++..|+.+.+.+.=-++|++-.++|.+.+-|-.+++. + .+.+|++.+++.++.+|...-|
T Consensus 460 ~~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~~fd~----------~---~~~~~~~~~~~~~vpIi~GImP 526 (612)
T PRK08645 460 KKTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQPVYDE----------E---LIEELLEATKHLGVPIFIGIMP 526 (612)
T ss_pred CCCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEecccCCH----------H---HHHHHHHHHhcCCCCEEEEeee
Confidence 34567899999987776555556677777899999999666544 3 7888998888777788777665
Q ss_pred eee--------eecCCCCCCcccccC-CCeEeecCChhHHHHHHHHHHHHHHHHh
Q 003044 119 YVC--------AEWNFGGFPVWLKYV-PGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (854)
Q Consensus 119 yi~--------aEw~~GGlP~WL~~~-p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 164 (854)
... .+|..-=+|.|+.+. .. .. +....++.-.++..++++.++
T Consensus 527 i~s~k~~~~~~~~~~Gv~vP~~l~~~l~~--~~-d~~~~~~~gv~~a~e~i~~l~ 578 (612)
T PRK08645 527 LVSYRNAEFLHNEVPGITLPEEIRERMRA--VE-DKEEAREEGVAIARELIDAAR 578 (612)
T ss_pred cCCHHHHHHHHhCCCCCCCCHHHHHHHHh--cC-CchHHHHHHHHHHHHHHHHHH
Confidence 432 234444568888762 11 11 223566667777777777776
No 178
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=27.26 E-value=1e+02 Score=33.21 Aligned_cols=60 Identities=15% Similarity=0.060 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHCCCCEEEeccccCccCCCC-CceeecccchHHHHHHHHHHcCCEEEEecC
Q 003044 57 DMWEDLIQKAKDGGLDVIETYVFWNVHEPSP-GNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (854)
Q Consensus 57 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~-G~ydf~g~~dl~~fl~la~~~gL~vilrpG 117 (854)
+.+++.++.++++|.+.|.+.-+-...++.. -.++. -...|.++.++|+++|+.+.+.+-
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQR-FIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHH-HHHHHHHHHHHHHHhCCEEEEEec
Confidence 4577889999999999998631100011111 01110 113678888999999999998863
No 179
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=27.19 E-value=1.2e+02 Score=32.06 Aligned_cols=44 Identities=18% Similarity=0.190 Sum_probs=35.3
Q ss_pred HHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCEEEEec
Q 003044 63 IQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (854)
Q Consensus 63 l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vilrp 116 (854)
..++|++|++.|-+ -|..++ |.-+ |+.+=++.|.++||.+|++.
T Consensus 74 ~~mLkd~G~~~vii-----GHSERR--f~Et---di~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 74 AEMLKDIGAKGTLI-----NHSERR--MKLA---DIEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHHcCCCEEEE-----CcccCC--CCcc---HHHHHHHHHHHCCCEEEEEE
Confidence 45789999998887 555555 5444 68999999999999999986
No 180
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=27.04 E-value=96 Score=33.81 Aligned_cols=52 Identities=21% Similarity=0.244 Sum_probs=33.6
Q ss_pred HHHHHHHHHCCCCEEEeccccC--ccCCCCCceeecccchHHHHHHHHHHcCCEEEE
Q 003044 60 EDLIQKAKDGGLDVIETYVFWN--VHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHL 114 (854)
Q Consensus 60 ~~~l~k~ka~G~N~V~~yv~Wn--~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vil 114 (854)
++.+++||++|++.|...+--+ .++...+..+|+ +..+.++.++++|+.|..
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~---~~~~ai~~l~~~Gi~v~~ 176 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYD---DRVDTLENAKKAGLKVCS 176 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHH---HHHHHHHHHHHcCCEEEE
Confidence 4578889999999987764411 112122223444 666778899999998643
No 181
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=26.62 E-value=3e+02 Score=29.11 Aligned_cols=126 Identities=16% Similarity=0.176 Sum_probs=71.7
Q ss_pred CHhHHHHHHHHHHHCCCCE-EEe--ccccCccCC---CCC--ceeec-----------c--cchHHHHHHHHHHcCCEEE
Q 003044 55 TPDMWEDLIQKAKDGGLDV-IET--YVFWNVHEP---SPG--NYNFE-----------G--RYDLVRFIKTIQKAGLYAH 113 (854)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~-V~~--yv~Wn~hEp---~~G--~ydf~-----------g--~~dl~~fl~la~~~gL~vi 113 (854)
-++.-.+.++++|+.|+.+ |+| |+.|...+. .-+ -+|+- | +..+-+.|+.+.+.|..+.
T Consensus 52 q~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~~~~il~nl~~l~~~g~~v~ 131 (213)
T PRK10076 52 QAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVI 131 (213)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEE
Confidence 3566788999999999863 444 445422221 111 12322 2 2345566777888888888
Q ss_pred EecCceeeeecCCCCCCcccccCCCeEeecCChhHHHHHHHHHHHHHHHHhhcccccccCCceEEecccc----------
Q 003044 114 LRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIEN---------- 183 (854)
Q Consensus 114 lrpGPyi~aEw~~GGlP~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiEN---------- 183 (854)
+|. |. +|++ ++++.-++++.+|++.+. +. +|-+..--+
T Consensus 132 iR~-~v----------------IPg~---nd~~e~i~~ia~~l~~l~--~~----------~~~llpyh~~g~~Ky~~lg 179 (213)
T PRK10076 132 PRL-PL----------------IPGF---TLSRENMQQALDVLIPLG--IK----------QIHLLPFHQYGEPKYRLLG 179 (213)
T ss_pred EEE-EE----------------ECCC---CCCHHHHHHHHHHHHHcC--Cc----------eEEEecCCccchhHHHHcC
Confidence 885 11 3554 455666666666665431 11 121111111
Q ss_pred -cccccccccCcccHHHHHHHHHHHHHcCCCc
Q 003044 184 -EYGAQSKLLGAAGHNYMTWAAKMAVEMGTGV 214 (854)
Q Consensus 184 -Eyg~~~~~~~~~~~~y~~~l~~~~~~~g~~v 214 (854)
+|-.. ......++.|+.+++.+++.|+.+
T Consensus 180 ~~y~~~--~~~~~~~~~l~~~~~~~~~~gl~~ 209 (213)
T PRK10076 180 KTWSMK--EVPAPSSADVATMREMAERAGFQV 209 (213)
T ss_pred CcCccC--CCCCcCHHHHHHHHHHHHHcCCeE
Confidence 22110 122467899999999999999876
No 182
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=26.20 E-value=23 Score=43.05 Aligned_cols=58 Identities=16% Similarity=0.243 Sum_probs=50.5
Q ss_pred cCCCCeEeeEeeeccCCCCCCCCCCCCCCccCCChhhhHhhhcCCCCceeEEecCCCc
Q 003044 765 CSPGHTISSIKFASFGTPLGTCGSYQQGPCHSPTSYDILEKKCVGKQRCAVTISNSNF 822 (854)
Q Consensus 765 C~~g~~Is~I~~A~YGR~~~~C~~~~~~~C~~~~s~~~V~~~C~Gk~~C~i~a~~~~F 822 (854)
|.++.++.+|..|.||...+.|+.+....|.++++...+...|-.+..|+|....+.+
T Consensus 332 ~ep~lv~gd~~~~kyg~~~~~C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck 389 (649)
T KOG0496|consen 332 CEPALVAGDITTAKYGNLREACAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCK 389 (649)
T ss_pred cCccccccCcccccccchhhHHHHHHhcCCCCCCCccccCCCccccCceeEEechhhc
Confidence 5567788888999999988889999889999999999999999999999998875544
No 183
>PRK11024 colicin uptake protein TolR; Provisional
Probab=26.07 E-value=4.4e+02 Score=25.73 Aligned_cols=52 Identities=6% Similarity=0.136 Sum_probs=31.6
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCE-EEEe
Q 003044 54 STPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLY-AHLR 115 (854)
Q Consensus 54 ~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~-vilr 115 (854)
++.+..+..|+...+..=+.. |.=.. .+.-.+. .+.+.++.|++.|+. |-+-
T Consensus 85 v~~~~L~~~l~~~~~~~~~~~---V~i~a----D~~~~~~---~vv~vmd~~k~aG~~~v~l~ 137 (141)
T PRK11024 85 LPEEQVVAEAKSRFKANPKTV---FLIGG----AKDVPYD---EIIKALNLLHSAGVKSVGLM 137 (141)
T ss_pred cCHHHHHHHHHHHHhhCCCce---EEEEc----CCCCCHH---HHHHHHHHHHHcCCCeEEEE
Confidence 567778888888766443221 11011 1222333 799999999999995 5443
No 184
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.01 E-value=23 Score=36.37 Aligned_cols=67 Identities=21% Similarity=0.348 Sum_probs=44.6
Q ss_pred EeEEEEEEeeCCCC---CHhHHHHHHHHHHHCCCCEEEeccccCccCCCCC--ceeecccchHHHHHHHHHHcCCEEEEe
Q 003044 41 RRILFSGSIHYPRS---TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPG--NYNFEGRYDLVRFIKTIQKAGLYAHLR 115 (854)
Q Consensus 41 ~~~~~sg~~Hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G--~ydf~g~~dl~~fl~la~~~gL~vilr 115 (854)
...+-+|--.|.|+ .|-.-. +-+.++|++.+-. -.--+.| -|||-...+|.+|.++|+++||.+-|.
T Consensus 115 k~VVAaGYaDa~Rvgsv~Pl~~P---~vaa~ag~DvaMv-----DTaiKDGkslFdfm~~e~l~eFvd~Ah~hGL~~AlA 186 (235)
T COG1891 115 KKVVAAGYADAHRVGSVSPLLLP---EVAAEAGADVAMV-----DTAIKDGKSLFDFMDEEELEEFVDLAHEHGLEVALA 186 (235)
T ss_pred ceEEeccccchhhccCcCccccH---HHHHhcCCCEEEE-----ecccccchhHHhhhcHHHHHHHHHHHHHcchHHHhc
Confidence 34455666667775 333333 2456788886543 1112344 599988889999999999999998765
No 185
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=25.98 E-value=5.1e+02 Score=24.55 Aligned_cols=15 Identities=13% Similarity=0.186 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHcCCE
Q 003044 97 DLVRFIKTIQKAGLY 111 (854)
Q Consensus 97 dl~~fl~la~~~gL~ 111 (854)
.+.+.++.|++.|+.
T Consensus 99 ~vv~v~d~~~~~G~~ 113 (121)
T TIGR02804 99 DFVTITDMLKAKEHE 113 (121)
T ss_pred HHHHHHHHHHHcCCC
Confidence 799999999999987
No 186
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=25.97 E-value=85 Score=36.57 Aligned_cols=56 Identities=20% Similarity=0.277 Sum_probs=39.9
Q ss_pred HHHHHHHHCCCCEEEe-cccc---CccCCCCCc---e--eecccchHHHHHHHHHHcCCEEEEec
Q 003044 61 DLIQKAKDGGLDVIET-YVFW---NVHEPSPGN---Y--NFEGRYDLVRFIKTIQKAGLYAHLRI 116 (854)
Q Consensus 61 ~~l~k~ka~G~N~V~~-yv~W---n~hEp~~G~---y--df~g~~dl~~fl~la~~~gL~vilrp 116 (854)
+.|.-+|.+|+++|-+ .++= ..|---.-. . .|.+..|+.++++.|++.||+||+-.
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 7888999999999964 3331 122111000 0 57777899999999999999999873
No 187
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=25.85 E-value=2.1e+02 Score=31.20 Aligned_cols=83 Identities=17% Similarity=0.254 Sum_probs=57.7
Q ss_pred ceeEEEecCcEEECCEEeEEEEEEeeCCCC-CHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeec--ccchHHHH
Q 003044 25 HCSVTYDRKALLINGQRRILFSGSIHYPRS-TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFE--GRYDLVRF 101 (854)
Q Consensus 25 ~~~v~~d~~~~~idG~~~~~~sg~~Hy~r~-~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~--g~~dl~~f 101 (854)
...|.+. .+.+.+..++++.| +-.+ ..+.-.+..+.+|+.|....+.|+|=+...| |.|. |..-|..+
T Consensus 11 ~s~i~~~--~~~~g~~~~~~IAG---pc~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp----~s~~g~g~~gl~~l 81 (260)
T TIGR01361 11 KTVVDVG--GVKIGEGSPIVIAG---PCSVESEEQIMETARFVKEAGAKILRGGAFKPRTSP----YSFQGLGEEGLKLL 81 (260)
T ss_pred CCEEEEC--CEEEcCCcEEEEEe---CCccCCHHHHHHHHHHHHHHHHHhccCceecCCCCC----ccccccHHHHHHHH
Confidence 3445553 35666555667777 3333 5666777888899999998888887654443 3454 45678888
Q ss_pred HHHHHHcCCEEEEec
Q 003044 102 IKTIQKAGLYAHLRI 116 (854)
Q Consensus 102 l~la~~~gL~vilrp 116 (854)
-+.|++.||.++-.|
T Consensus 82 ~~~~~~~Gl~~~t~~ 96 (260)
T TIGR01361 82 RRAADEHGLPVVTEV 96 (260)
T ss_pred HHHHHHhCCCEEEee
Confidence 889999999988875
No 188
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=25.30 E-value=1.4e+02 Score=35.16 Aligned_cols=55 Identities=27% Similarity=0.396 Sum_probs=45.5
Q ss_pred eeCCCCCHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCEEEEe
Q 003044 49 IHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLR 115 (854)
Q Consensus 49 ~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vilr 115 (854)
..|.+.|.+.-++.++++.+.|+..|+++.+-|.. .++...++.|+++|+.|.+.
T Consensus 88 ~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~v~~ak~~G~~v~~~ 142 (448)
T PRK12331 88 LGYRNYADDVVESFVQKSVENGIDIIRIFDALNDV------------RNLETAVKATKKAGGHAQVA 142 (448)
T ss_pred cccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCeEEEE
Confidence 34667788888889999999999999998876653 25888999999999987655
No 189
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=25.22 E-value=2.9e+02 Score=30.97 Aligned_cols=60 Identities=10% Similarity=0.156 Sum_probs=46.4
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEecc----ccCccC---CC---CC----ceeecccchHHHHHHHHHHcCCEEEEec
Q 003044 54 STPDMWEDLIQKAKDGGLDVIETYV----FWNVHE---PS---PG----NYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (854)
Q Consensus 54 ~~~~~W~~~l~k~ka~G~N~V~~yv----~Wn~hE---p~---~G----~ydf~g~~dl~~fl~la~~~gL~vilrp 116 (854)
.|.+..++.|+.|...++|+...++ -|.+-- |+ .| .|. ..|+.++++.|++.|+.||-.+
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT---~~di~elv~yA~~rgI~vIPEI 88 (311)
T cd06570 15 IPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYT---QEQIREVVAYARDRGIRVVPEI 88 (311)
T ss_pred cCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccC---HHHHHHHHHHHHHcCCEEEEee
Confidence 5789999999999999999999987 475421 11 22 233 3499999999999999998663
No 190
>PRK15492 triosephosphate isomerase; Provisional
Probab=25.05 E-value=1.3e+02 Score=32.81 Aligned_cols=49 Identities=14% Similarity=0.108 Sum_probs=38.2
Q ss_pred HHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCEEEEecC
Q 003044 63 IQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (854)
Q Consensus 63 l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vilrpG 117 (854)
..++|++|++.|-+ -|..++-.|. +-+..+.+=++.|.++||.+|++.|
T Consensus 87 a~mLkd~G~~~vii-----GHSERR~~f~-Etd~~v~~Kv~~a~~~gl~pIvCiG 135 (260)
T PRK15492 87 PLMLKEIGTQLVMI-----GHSERRHKFG-ETDQEENAKVLAALKHDFTTLLCVG 135 (260)
T ss_pred HHHHHHcCCCEEEE-----CccccccccC-cchHHHHHHHHHHHHCCCEEEEEcC
Confidence 45789999999988 6666665554 3345667778889999999999987
No 191
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=24.98 E-value=1e+02 Score=38.43 Aligned_cols=55 Identities=29% Similarity=0.410 Sum_probs=40.7
Q ss_pred HHHHHHHCCCCEEEe-ccccCccCCCC---C-----------------ceeecc-----cchHHHHHHHHHHcCCEEEEe
Q 003044 62 LIQKAKDGGLDVIET-YVFWNVHEPSP---G-----------------NYNFEG-----RYDLVRFIKTIQKAGLYAHLR 115 (854)
Q Consensus 62 ~l~k~ka~G~N~V~~-yv~Wn~hEp~~---G-----------------~ydf~g-----~~dl~~fl~la~~~gL~vilr 115 (854)
.|.-+|++|+++|+. .|+.-..|+.. | .|--.. .+.+..+++.++++||-|||.
T Consensus 205 ~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 205 IIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 388999999999996 67766555543 2 222222 247888899999999999998
Q ss_pred c
Q 003044 116 I 116 (854)
Q Consensus 116 p 116 (854)
.
T Consensus 285 V 285 (697)
T COG1523 285 V 285 (697)
T ss_pred E
Confidence 4
No 192
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=24.85 E-value=1.1e+02 Score=32.66 Aligned_cols=60 Identities=15% Similarity=-0.041 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCEEEEec
Q 003044 57 DMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (854)
Q Consensus 57 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vilrp 116 (854)
+..++.++.++++|..+|.+...+.-....+.+..-.-...|.++.++|+++|+.+.+.|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 457888899999999999764333211111112100112466778889999999999987
No 193
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=24.83 E-value=83 Score=36.24 Aligned_cols=86 Identities=16% Similarity=0.227 Sum_probs=62.2
Q ss_pred eeEEEecCcEEECCEEeEEEEEEeeCCC-CCHhHHHHHHHHHHHC-CCCEEEeccccCccCCCCCceeecccchHHHHHH
Q 003044 26 CSVTYDRKALLINGQRRILFSGSIHYPR-STPDMWEDLIQKAKDG-GLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIK 103 (854)
Q Consensus 26 ~~v~~d~~~~~idG~~~~~~sg~~Hy~r-~~~~~W~~~l~k~ka~-G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~ 103 (854)
+.|-+-+-+|-+..-+-....=|+.|+- .|.+.||-+|..+.++ -=||+.+-| =|=+.|--++|+-. .|.+.++
T Consensus 151 aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~Aivv-iNP~NPcGnVys~~---HL~kiae 226 (447)
T KOG0259|consen 151 ANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVV-INPNNPCGNVYSED---HLKKIAE 226 (447)
T ss_pred CceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEE-eCCCCCCcccccHH---HHHHHHH
Confidence 3444444444444433333444455444 5889999999999985 788988754 46777888888877 8999999
Q ss_pred HHHHcCCEEEEe
Q 003044 104 TIQKAGLYAHLR 115 (854)
Q Consensus 104 la~~~gL~vilr 115 (854)
+|+++|+.||..
T Consensus 227 ~A~klgi~vIaD 238 (447)
T KOG0259|consen 227 TAKKLGIMVIAD 238 (447)
T ss_pred HHHHhCCeEEeh
Confidence 999999999865
No 194
>PF08306 Glyco_hydro_98M: Glycosyl hydrolase family 98; InterPro: IPR013191 This domain is the putative catalytic domain of glycosyl hydrolase family 98 proteins.; PDB: 2VNO_B 2VNR_A 2VNG_B 2WMH_A 2WMG_A 2WMF_A 2WMK_A 2WMJ_B 2WMI_B.
Probab=24.71 E-value=57 Score=36.55 Aligned_cols=59 Identities=22% Similarity=0.441 Sum_probs=37.2
Q ss_pred EEEEEEee------CCCCCHhHHHHHHHHHHHC-CCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCEE
Q 003044 43 ILFSGSIH------YPRSTPDMWEDLIQKAKDG-GLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYA 112 (854)
Q Consensus 43 ~~~sg~~H------y~r~~~~~W~~~l~k~ka~-G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~v 112 (854)
++.||. | +.+++.+.|++-.++--.. |+|.++-| |..-++.. ....++|++|+++|-+.
T Consensus 104 q~~sgG-~~~~y~~~~~~~~~~~~e~fr~Ypnf~G~n~~Eqf--Wgf~~~~~--------~~~A~lLkl~akYGGy~ 169 (324)
T PF08306_consen 104 QPSSGG-HFPDYSAYHDIENTWYEEFFRDYPNFQGFNYAEQF--WGFDDPGS--------EHFADLLKLCAKYGGYF 169 (324)
T ss_dssp EEEECC-G-TTT-GCCG--HHHHHHHHHH-TTEEEEEEE--T--TS--TTHH--------HHHHHHHHHHHHTT-EE
T ss_pred EecCCC-CCCCccccccCChHHHHHHHHhCccccccccHhhh--eecCCchh--------HHHHHHHHHHHHhCceE
Confidence 456777 8 4456777777777777664 89888875 55444432 37889999999999988
No 195
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=24.63 E-value=2.8e+02 Score=31.56 Aligned_cols=60 Identities=17% Similarity=0.195 Sum_probs=45.6
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEeccc----cCccC----------------------------CCCCceeecccchHHHH
Q 003044 54 STPDMWEDLIQKAKDGGLDVIETYVF----WNVHE----------------------------PSPGNYNFEGRYDLVRF 101 (854)
Q Consensus 54 ~~~~~W~~~l~k~ka~G~N~V~~yv~----Wn~hE----------------------------p~~G~ydf~g~~dl~~f 101 (854)
.+.+...+.|..|...++|+.+.++- |.+-- +..|.|.- .|+.++
T Consensus 15 ~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~---~di~ei 91 (357)
T cd06563 15 FPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQ---EEIREI 91 (357)
T ss_pred cCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECH---HHHHHH
Confidence 36889999999999999999998763 43211 11233433 499999
Q ss_pred HHHHHHcCCEEEEec
Q 003044 102 IKTIQKAGLYAHLRI 116 (854)
Q Consensus 102 l~la~~~gL~vilrp 116 (854)
++.|+++|+.||-.+
T Consensus 92 v~yA~~rgI~VIPEI 106 (357)
T cd06563 92 VAYAAERGITVIPEI 106 (357)
T ss_pred HHHHHHcCCEEEEec
Confidence 999999999999664
No 196
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=24.52 E-value=2.4e+02 Score=29.86 Aligned_cols=90 Identities=11% Similarity=0.171 Sum_probs=63.8
Q ss_pred CHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeec-ccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccc
Q 003044 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFE-GRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWL 133 (854)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~-g~~dl~~fl~la~~~gL~vilrpGPyi~aEw~~GGlP~WL 133 (854)
.+.+++..++.++++|+-.+-+|..... ....|..+ |..|-..-+++|+++|+ .+|-.| ++
T Consensus 50 ~k~lt~~e~~~i~~~Gl~~~pIyq~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~----p~gs~I-----------Yf 111 (212)
T cd06418 50 SKNLTATELETITAAGLKVFPIYQGGGY---SLDYFGYEQGVKDARDAVAAARALGF----PPGTII-----------YF 111 (212)
T ss_pred CCCCCHHHHHHHHHCCCEEEEEEECCCc---cccccCHHHHHHHHHHHHHHHHHcCC----CCCCEE-----------EE
Confidence 5788999999999999999999988765 22333333 77899999999999998 334333 33
Q ss_pred ccCCCeEeecCChhHHHHHHHHHHHHHHHHhhc
Q 003044 134 KYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSE 166 (854)
Q Consensus 134 ~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~ 166 (854)
.-+.+. .+..+...+..||+.+...|+..
T Consensus 112 avD~d~----~~~~~~~~v~~Y~~a~~~~l~~~ 140 (212)
T cd06418 112 AVDFDA----LDDEVTEVILPYFRGWNDALHEA 140 (212)
T ss_pred EeecCC----CcchhHHHHHHHHHHHHHHHHhc
Confidence 222221 12336778889999998888844
No 197
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.24 E-value=1.4e+02 Score=24.22 Aligned_cols=55 Identities=16% Similarity=0.322 Sum_probs=38.8
Q ss_pred HhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCEE
Q 003044 56 PDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYA 112 (854)
Q Consensus 56 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~v 112 (854)
|..-.+.+.-+.+.|+|.++++. +...+.....+-|.-+ +.++.++..+++|..|
T Consensus 10 pG~L~~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve-~~~~~~~~L~~~G~~v 64 (65)
T cd04882 10 PGGLHEILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE-DIEKAIEVLQERGVEL 64 (65)
T ss_pred CcHHHHHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC-CHHHHHHHHHHCCceE
Confidence 44566788889999999998876 3322234455555532 4889999999999765
No 198
>TIGR02801 tolR TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score.
Probab=23.95 E-value=5.2e+02 Score=24.63 Aligned_cols=15 Identities=13% Similarity=0.581 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHcCCE
Q 003044 97 DLVRFIKTIQKAGLY 111 (854)
Q Consensus 97 dl~~fl~la~~~gL~ 111 (854)
.+.+.++.|++.|+.
T Consensus 108 ~vv~vmd~~~~~G~~ 122 (129)
T TIGR02801 108 EVIKVMALLKQAGIE 122 (129)
T ss_pred HHHHHHHHHHHcCCC
Confidence 899999999999996
No 199
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=23.94 E-value=1.2e+02 Score=32.82 Aligned_cols=40 Identities=13% Similarity=0.187 Sum_probs=32.1
Q ss_pred EECCEEeEEEEEEeeCCCC-CHhHHHHHHHHHHHCCCCEEE
Q 003044 36 LINGQRRILFSGSIHYPRS-TPDMWEDLIQKAKDGGLDVIE 75 (854)
Q Consensus 36 ~idG~~~~~~sg~~Hy~r~-~~~~W~~~l~k~ka~G~N~V~ 75 (854)
.+.|+++..++|..|+... ...+-+--++.||++|+..|=
T Consensus 47 ~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~ii 87 (237)
T TIGR01698 47 RIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETLI 87 (237)
T ss_pred EECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEEE
Confidence 4589999999999997664 455557889999999997553
No 200
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=23.02 E-value=4.9e+02 Score=30.55 Aligned_cols=115 Identities=14% Similarity=0.147 Sum_probs=0.0
Q ss_pred ECCEEeEEEEEEeeCCC---CCHhHHHHHHHHHHHCCCC----EEEeccccCccCCCCCceeecccchHHHHHHHHHHcC
Q 003044 37 INGQRRILFSGSIHYPR---STPDMWEDLIQKAKDGGLD----VIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAG 109 (854)
Q Consensus 37 idG~~~~~~sg~~Hy~r---~~~~~W~~~l~k~ka~G~N----~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~g 109 (854)
+++.-|+++.+.-+-++ +.++.-+.-.+.+++.|++ ++...-.-|+-.|.+..++++ ..-+.+-|+.|.+.|
T Consensus 153 ~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYlINLASpd~e~rekS-v~~~~~eL~rA~~LG 231 (413)
T PTZ00372 153 IAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGSYLINLANPDKEKREKS-YDAFLDDLQRCEQLG 231 (413)
T ss_pred cCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCceecCCCCCHHHHHHH-HHHHHHHHHHHHHcC
Q ss_pred CE-EEEecCceeeeecCCCCCCcccccCCCeEeecCChhHHHHHHHHHHHHHHHHhhcccccccCCceEEecccc
Q 003044 110 LY-AHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIEN 183 (854)
Q Consensus 110 L~-vilrpGPyi~aEw~~GGlP~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiEN 183 (854)
.. |++-|| -....-..-+..+++.+.|...++ ...|..|++ ||
T Consensus 232 a~~VV~HPG-----------------------s~~~~~~~ee~i~~i~e~L~~~la------~~~gV~IlL--EN 275 (413)
T PTZ00372 232 IKLYNFHPG-----------------------STVGQCSKEEGIKNIADCINKAHE------ETKSVIIVL--EN 275 (413)
T ss_pred CCEEEECCC-----------------------cCCCCCCHHHHHHHHHHHHHHHHh------CcCCCEEEE--ec
No 201
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=22.94 E-value=1.6e+02 Score=32.66 Aligned_cols=88 Identities=22% Similarity=0.350 Sum_probs=57.5
Q ss_pred HHHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCE--EEEecCcee-------eeecCCCCCCcc
Q 003044 62 LIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLY--AHLRIGPYV-------CAEWNFGGFPVW 132 (854)
Q Consensus 62 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~--vilrpGPyi-------~aEw~~GGlP~W 132 (854)
+|++-.++|.+.+-|-.| ||.+ .+.+|++.|++.|+. |+...-|-. -++...-.+|.|
T Consensus 168 ~Lk~K~~aGA~~~iTQ~~----------Fd~~---~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~vP~~ 234 (296)
T PRK09432 168 NLKRKVDAGANRAITQFF----------FDVE---SYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNVRIPAW 234 (296)
T ss_pred HHHHHHHcCCCeeecccc----------cchH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccCCCCCHH
Confidence 566666789988888444 4545 799999999999955 444444422 256677789999
Q ss_pred cccC-CCeEeecCC-hhHHHHHHHHHHHHHHHHhh
Q 003044 133 LKYV-PGISFRTDN-EPFKRAMQGFTEKIVNLMKS 165 (854)
Q Consensus 133 L~~~-p~~~~Rt~d-~~y~~~~~~~~~~l~~~l~~ 165 (854)
+.+. .. . .+| ...+++--++..++++.|.+
T Consensus 235 l~~~l~~--~-~d~~~~~~~~Gi~~a~e~i~~L~~ 266 (296)
T PRK09432 235 MAKMFDG--L-DDDAETRKLVGASIAMDMVKILSR 266 (296)
T ss_pred HHHHHHh--c-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9862 11 1 233 33555566677777777763
No 202
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=22.90 E-value=93 Score=35.40 Aligned_cols=62 Identities=13% Similarity=0.103 Sum_probs=44.3
Q ss_pred CCCHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCEEEEec
Q 003044 53 RSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (854)
Q Consensus 53 r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vilrp 116 (854)
|.+...-....+.++++|-++|.+.++|.-.++. +-+-.-..+|.++.+.|+++||-+++-+
T Consensus 102 r~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~--~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 102 RLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDD--AINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred CCccccccccHHHHHHcCCCEEEEEEEeCCCcch--HHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 5554443345788999999999999999954331 0011123489999999999999988863
No 203
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=22.53 E-value=2.5e+02 Score=30.48 Aligned_cols=103 Identities=18% Similarity=0.243 Sum_probs=61.9
Q ss_pred EeeCCCCCHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCC--EEEEecCceee----
Q 003044 48 SIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGL--YAHLRIGPYVC---- 121 (854)
Q Consensus 48 ~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL--~vilrpGPyi~---- 121 (854)
+.|+...+.+.=-++|++=.++|.+.+-|-.+.+ .+ .+.+|++.|++.|+ .|++..-|-..
T Consensus 138 e~hp~~~~~~~~~~~L~~Ki~aGA~f~iTQ~~fd----------~~---~~~~~~~~~~~~gi~vPIi~GI~p~~s~~~l 204 (274)
T cd00537 138 EGHPEAPSLEEDIKRLKRKVDAGADFIITQLFFD----------ND---AFLRFVDRCRAAGITVPIIPGIMPLTSYKQA 204 (274)
T ss_pred CcCCCCCCHHHHHHHHHHHHHCCCCEEeeccccc----------HH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHH
Confidence 4444444344334455555567999999955543 33 79999999999984 45665555432
Q ss_pred ---eecCCCCCCcccccCCCeEeecCChhHHHHHHHHHHHHHHHHh
Q 003044 122 ---AEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (854)
Q Consensus 122 ---aEw~~GGlP~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 164 (854)
+++-.-++|.|+.+.=. ....+.....+.-.++..++++.+.
T Consensus 205 ~~~~~~~Gv~vP~~~~~~l~-~~~~~~~~~~~~g~~~~~~l~~~l~ 249 (274)
T cd00537 205 KRFAKLCGVEIPDWLLERLE-KLKDDAEAVRAEGIEIAAELCDELL 249 (274)
T ss_pred HHHHHhhCCCCCHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 35555678999876210 0011223344556667777777776
No 204
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=22.50 E-value=4.2e+02 Score=28.50 Aligned_cols=101 Identities=11% Similarity=0.083 Sum_probs=56.8
Q ss_pred CHhHHHHHHHHHHHCCCCEEEeccc-c---CccCCCCCceeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCC
Q 003044 55 TPDMWEDLIQKAKDGGLDVIETYVF-W---NVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFP 130 (854)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv~-W---n~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vilrpGPyi~aEw~~GGlP 130 (854)
+++.-....+.+++.|+....+-.. + ++..+.+...+- ....+.+.+++|++.|-.+|.-+|. ..
T Consensus 50 ~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~l~~~~~~~r~~-~~~~~~~~i~~a~~lG~~~v~~~~~---------~~- 118 (279)
T TIGR00542 50 SREQRLALVNAIIETGVRIPSMCLSAHRRFPLGSKDKAVRQQ-GLEIMEKAIQLARDLGIRTIQLAGY---------DV- 118 (279)
T ss_pred CHHHHHHHHHHHHHcCCCceeeecCCCccCcCCCcCHHHHHH-HHHHHHHHHHHHHHhCCCEEEecCc---------cc-
Confidence 4555555666788999987765321 1 222222222111 1236889999999999987743220 00
Q ss_pred cccccCCCeEeecCChhHHHHHHHHHHHHHHHHhhcccccccCCceEEeccccc
Q 003044 131 VWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENE 184 (854)
Q Consensus 131 ~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENE 184 (854)
. ++ ..+..-++.+.+.++++++..+++. |.+.+||.
T Consensus 119 --~---~~----~~~~~~~~~~~~~l~~l~~~A~~~G---------v~l~lE~~ 154 (279)
T TIGR00542 119 --Y---YE----EHDEETRRRFREGLKEAVELAARAQ---------VTLAVEIM 154 (279)
T ss_pred --c---cC----cCCHHHHHHHHHHHHHHHHHHHHcC---------CEEEEeeC
Confidence 0 00 1123445666677788888887443 45567875
No 205
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=22.47 E-value=1.9e+02 Score=34.12 Aligned_cols=59 Identities=15% Similarity=0.272 Sum_probs=44.7
Q ss_pred CHhHHHHHHHHHHHCCCCEEEeccc----cCccC-----------------------------------CCCCceeeccc
Q 003044 55 TPDMWEDLIQKAKDGGLDVIETYVF----WNVHE-----------------------------------PSPGNYNFEGR 95 (854)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv~----Wn~hE-----------------------------------p~~G~ydf~g~ 95 (854)
+.+.-++.|+.|....+|+...++- |-+-= +..|.|. .
T Consensus 20 ~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~~~~~~~~~~~~g~YT---~ 96 (445)
T cd06569 20 SKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQLGSGPDTNNSGSGYYS---R 96 (445)
T ss_pred CHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccccccccccCcccCcccCCccC---H
Confidence 8899999999999999999998873 53210 0112232 3
Q ss_pred chHHHHHHHHHHcCCEEEEec
Q 003044 96 YDLVRFIKTIQKAGLYAHLRI 116 (854)
Q Consensus 96 ~dl~~fl~la~~~gL~vilrp 116 (854)
.|+.++++.|++.|+.||-.+
T Consensus 97 ~di~eiv~yA~~rgI~VIPEI 117 (445)
T cd06569 97 ADYIEILKYAKARHIEVIPEI 117 (445)
T ss_pred HHHHHHHHHHHHcCCEEEEcc
Confidence 599999999999999998654
No 206
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=22.40 E-value=2.7e+02 Score=34.68 Aligned_cols=62 Identities=15% Similarity=0.143 Sum_probs=44.6
Q ss_pred CCCHhHHHHHHHHHHHCCCCEEEeccccC---ccCCCCCc---eeec-c-cchHHHHHHHHHHcCCEEEE
Q 003044 53 RSTPDMWEDLIQKAKDGGLDVIETYVFWN---VHEPSPGN---YNFE-G-RYDLVRFIKTIQKAGLYAHL 114 (854)
Q Consensus 53 r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn---~hEp~~G~---ydf~-g-~~dl~~fl~la~~~gL~vil 114 (854)
.++++..+.-|+-+|+.|+++|+.=-... -..+.|++ ..|+ | ..+....+.+.+++|+...+
T Consensus 68 ~Vspe~Fe~QL~~Lk~nGY~~VSL~el~~~~~g~~~LP~KaV~LTFDDGy~sny~~AlPILKkyg~pATf 137 (672)
T PRK14581 68 SVRSSALNEQFVWLRDNGYHVVSVDQILAARNGGPTLPDKAVLLTFDDGYSSFYRRVYPLLKAYKWSAVL 137 (672)
T ss_pred ccCHHHHHHHHHHHHHCcCEEecHHHHHHHHhcCCCCCCCeEEEEEEcCCcchHHHHHHHHHHcCCCEEE
Confidence 45788999999999999999999754432 22333442 3454 3 34667889999999999654
No 207
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=22.21 E-value=5.8e+02 Score=24.95 Aligned_cols=50 Identities=20% Similarity=0.321 Sum_probs=30.3
Q ss_pred CCHhHHHHHHHHHHHCCCCE-EEeccccCccCCCCCceeecccchHHHHHHHHHHcCCE-EEE
Q 003044 54 STPDMWEDLIQKAKDGGLDV-IETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLY-AHL 114 (854)
Q Consensus 54 ~~~~~W~~~l~k~ka~G~N~-V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~-vil 114 (854)
+..+.....|++.++..=+. |.+ .. ...-.+. .+.+.++.|++.|+. |-+
T Consensus 81 v~~~~L~~~L~~~~~~~~~~~V~I----~a----D~~~~~~---~vv~vmd~l~~aG~~~v~l 132 (141)
T PRK11267 81 VTDETMITALDALTEGKKDTTIFF----RA----DKTVDYE---TLMKVMDTLHQAGYLKIGL 132 (141)
T ss_pred ccHHHHHHHHHHHHhcCCCceEEE----Ec----CCCCCHH---HHHHHHHHHHHcCCCeEEE
Confidence 45677888888877643221 111 01 1112233 899999999999996 434
No 208
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=22.04 E-value=1.6e+02 Score=33.43 Aligned_cols=43 Identities=19% Similarity=0.170 Sum_probs=28.2
Q ss_pred ecCcEEECCEEeEEEEEEeeCCCC-CHhHHHHHH-HHHHHCCCCEEEe
Q 003044 31 DRKALLINGQRRILFSGSIHYPRS-TPDMWEDLI-QKAKDGGLDVIET 76 (854)
Q Consensus 31 d~~~~~idG~~~~~~sg~~Hy~r~-~~~~W~~~l-~k~ka~G~N~V~~ 76 (854)
|.+.+.|||||++++=. +.-+ ....+-+.+ +.+|++|+.-|-+
T Consensus 150 D~rYikVdGKPv~~Iy~---p~~~pd~~~~~~~wr~~a~~~G~~giyi 194 (345)
T PF14307_consen 150 DPRYIKVDGKPVFLIYR---PGDIPDIKEMIERWREEAKEAGLPGIYI 194 (345)
T ss_pred CCCceeECCEEEEEEEC---cccccCHHHHHHHHHHHHHHcCCCceEE
Confidence 67899999999998833 3222 233333333 5668899986554
No 209
>PRK14567 triosephosphate isomerase; Provisional
Probab=21.99 E-value=1.7e+02 Score=31.98 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=37.6
Q ss_pred HHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCEEEEecC
Q 003044 63 IQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (854)
Q Consensus 63 l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vilrpG 117 (854)
-.++|++|++.|-+ -|..++--|. +.+..+.+=++.|.++||.+|++.|
T Consensus 78 ~~mLkd~G~~yvii-----GHSERR~~f~-Etd~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 78 ARMLEDIGCDYLLI-----GHSERRSLFA-ESDEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred HHHHHHcCCCEEEE-----CcccccCccC-CCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 34789999999888 5665555444 3345677778889999999999987
No 210
>PLN03059 beta-galactosidase; Provisional
Probab=21.84 E-value=4.1e+02 Score=33.90 Aligned_cols=43 Identities=19% Similarity=0.334 Sum_probs=31.9
Q ss_pred CCCceEEEEEEECCCCCC------CeEEeeCCCc-cEEEEECCeeeeeee
Q 003044 618 QQPLMWHKAYFNAPEGDE------PLALDMEGMG-KGQIWINGQSVGRYW 660 (854)
Q Consensus 618 ~~~~~wyk~~F~~p~~~d------pt~Ld~~g~g-KG~vwVNG~nLGRYW 660 (854)
.....||+++|+++.... ...|.+.+.+ .-+|||||.-+|.-+
T Consensus 468 ~~dYlwY~t~i~~~~~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~ 517 (840)
T PLN03059 468 ATDYLWYMTEVHIDPDEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVY 517 (840)
T ss_pred CCceEEEEEEEeecCCccccccCCCceEEEcccCcEEEEEECCEEEEEEE
Confidence 346899999999875421 1237777765 479999999999875
No 211
>PRK14565 triosephosphate isomerase; Provisional
Probab=21.80 E-value=1.5e+02 Score=32.09 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=34.6
Q ss_pred HHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCEEEEecC
Q 003044 63 IQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (854)
Q Consensus 63 l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vilrpG 117 (854)
.+++|++|++.+-+ -|..++--|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 78 ~~mLkd~G~~~vii-----GHSERR~~f~Et-d~~V~~Kv~~al~~gl~pIvCiG 126 (237)
T PRK14565 78 AKMLKECGCSYVIL-----GHSERRSTFHET-DSDIRLKAESAIESGLIPIICVG 126 (237)
T ss_pred HHHHHHcCCCEEEE-----CcccccCcCCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 45789999998888 565555444322 23343444889999999999987
No 212
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=21.60 E-value=3.8e+02 Score=30.43 Aligned_cols=63 Identities=16% Similarity=0.212 Sum_probs=46.2
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEeccc----cCccCC------CCCceeec---ccchHHHHHHHHHHcCCEEEEec
Q 003044 54 STPDMWEDLIQKAKDGGLDVIETYVF----WNVHEP------SPGNYNFE---GRYDLVRFIKTIQKAGLYAHLRI 116 (854)
Q Consensus 54 ~~~~~W~~~l~k~ka~G~N~V~~yv~----Wn~hEp------~~G~ydf~---g~~dl~~fl~la~~~gL~vilrp 116 (854)
.|.+..++.|+.|....+|+...++- |.+--+ +.|.|.-. -..|+.++++.|++.|+.||-.+
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEI 90 (348)
T cd06562 15 LSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEI 90 (348)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEec
Confidence 36889999999999999999998763 554322 12322111 12499999999999999999764
No 213
>PLN02429 triosephosphate isomerase
Probab=21.58 E-value=1.4e+02 Score=33.54 Aligned_cols=49 Identities=18% Similarity=0.059 Sum_probs=32.4
Q ss_pred HHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCEEEEecC
Q 003044 63 IQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (854)
Q Consensus 63 l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vilrpG 117 (854)
..++|++|++.|-+ -|..++-.|. +.+..+.+=+..|.++||.+|++.|
T Consensus 140 a~mLkd~Gv~~Vii-----GHSERR~~f~-Etd~~V~~Kv~~al~~GL~pIvCIG 188 (315)
T PLN02429 140 VEQLKDLGCKWVIL-----GHSERRHVIG-EKDEFIGKKAAYALSEGLGVIACIG 188 (315)
T ss_pred HHHHHHcCCCEEEe-----CccccCCCCC-cCHHHHHHHHHHHHHCcCEEEEEcC
Confidence 34788899988877 5555554443 1122333334449999999999987
No 214
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=21.58 E-value=2.1e+02 Score=31.24 Aligned_cols=49 Identities=27% Similarity=0.318 Sum_probs=40.5
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCEEEE
Q 003044 54 STPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHL 114 (854)
Q Consensus 54 ~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vil 114 (854)
.|.+.=+++++++.+.|+..|+++++.+- + ..+...++.|+++|+.|..
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~~~~~~---------~---~~~~~~i~~ak~~G~~v~~ 136 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIFDALND---------V---RNLEVAIKAVKKAGKHVEG 136 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEeecCCh---------H---HHHHHHHHHHHHCCCeEEE
Confidence 45666788999999999999999887664 2 2788999999999998775
No 215
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=21.57 E-value=2e+02 Score=28.14 Aligned_cols=92 Identities=13% Similarity=0.192 Sum_probs=46.0
Q ss_pred CHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeec-ccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccc
Q 003044 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFE-GRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWL 133 (854)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~-g~~dl~~fl~la~~~gL~vilrpGPyi~aEw~~GGlP~WL 133 (854)
.+.+.+..++.++++|+..+-+|.....+. ......++ |..|-..-++.|+++|+. . |-|-++
T Consensus 36 ~k~Lt~~e~~~i~~~Gl~i~pIyq~~~~~~-~~~~~~~~~G~~dA~~A~~~A~~lG~p----~-----------gt~IYf 99 (136)
T PF08924_consen 36 QKNLTAGEVQDIRAAGLRIFPIYQGGGRET-SDFTYGYAQGVADARDAVAAARALGFP----A-----------GTPIYF 99 (136)
T ss_dssp --B--HHHHHHHHHTT-EEEEEE---------S-B--HHHHHHHHHHHHHHHHHTT------S-----------S-EEEE
T ss_pred cCCCCHHHHHHHHHCCCEEEEEEecccccc-cccccHHHHHHHHHHHHHHHHHHcCCC----C-----------CCEEEE
Confidence 468889999999999999999988772221 11112222 667889999999999983 2 233333
Q ss_pred ccCCCeEeecCChhHHHHHHHHHHHHHHHHhhc
Q 003044 134 KYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSE 166 (854)
Q Consensus 134 ~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~ 166 (854)
--+-+ ..+..+.+.+..|++.+...|..+
T Consensus 100 avD~d----~~~~~~~~~i~~Y~~g~~~~l~~~ 128 (136)
T PF08924_consen 100 AVDYD----ATDAECDSAILPYFRGWNSALGAS 128 (136)
T ss_dssp E--TS-----B-HH-------HHHHHHHHHGGG
T ss_pred EeecC----CCchhhhhHHHHHHHHHHHHHhhC
Confidence 22211 235667788888888888888843
No 216
>PTZ00333 triosephosphate isomerase; Provisional
Probab=21.46 E-value=1.8e+02 Score=31.79 Aligned_cols=48 Identities=23% Similarity=0.223 Sum_probs=39.0
Q ss_pred HHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCEEEEecC
Q 003044 64 QKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (854)
Q Consensus 64 ~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vilrpG 117 (854)
.++|++|++.|-+ -|..++--|. +.+..+.+=++.|.++||.+|++.|
T Consensus 83 ~mL~d~G~~~vii-----GHSERR~~f~-Etd~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 83 EMLKDLGINWTIL-----GHSERRQYFG-ETNEIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred HHHHHcCCCEEEE-----CcccccCcCC-CCcHHHHHHHHHHHHCCCEEEEEcC
Confidence 5789999999988 6666665553 3456888889999999999999987
No 217
>PLN02784 alpha-amylase
Probab=21.38 E-value=1.9e+02 Score=36.97 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=38.7
Q ss_pred HHHHHHHHHCCCCEEEeccccCccCC---CCCc-ee----ecccchHHHHHHHHHHcCCEEEEec
Q 003044 60 EDLIQKAKDGGLDVIETYVFWNVHEP---SPGN-YN----FEGRYDLVRFIKTIQKAGLYAHLRI 116 (854)
Q Consensus 60 ~~~l~k~ka~G~N~V~~yv~Wn~hEp---~~G~-yd----f~g~~dl~~fl~la~~~gL~vilrp 116 (854)
.+++..++++|+++|-+.=+-....+ .+.. |+ |....+|.++++.|+++||.||+..
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45677889999999987532211111 1111 22 2334699999999999999999885
No 218
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.32 E-value=5.9e+02 Score=27.59 Aligned_cols=83 Identities=10% Similarity=0.053 Sum_probs=51.3
Q ss_pred HHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCEE--EEecCceeeeecCCCCCCcccccCC
Q 003044 60 EDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYA--HLRIGPYVCAEWNFGGFPVWLKYVP 137 (854)
Q Consensus 60 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~v--ilrpGPyi~aEw~~GGlP~WL~~~p 137 (854)
.+.++.+++.|+++|++++-... --........+..+|.+.++++++.+ +.-=+||.
T Consensus 14 ~~a~~~~~~~G~~~~qif~~~P~----~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~----------------- 72 (274)
T TIGR00587 14 QAAYNRAAEIGATAFMFFLKSPR----WWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYL----------------- 72 (274)
T ss_pred HHHHHHHHHhCCCEEEEEecCcc----ccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCee-----------------
Confidence 56899999999999999653111 00011111236888889999998863 33335553
Q ss_pred CeEeecCChhHHHHHHHHHHHHHHHHh
Q 003044 138 GISFRTDNEPFKRAMQGFTEKIVNLMK 164 (854)
Q Consensus 138 ~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 164 (854)
+.+=+.|+.-+++..+.+++.++.-+
T Consensus 73 -iNlas~~~~~r~~sv~~~~~~i~~A~ 98 (274)
T TIGR00587 73 -INLASPDEEKEEKSLDVLDEELKRCE 98 (274)
T ss_pred -eecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12334567777776666666666555
No 219
>PRK14566 triosephosphate isomerase; Provisional
Probab=21.27 E-value=1.8e+02 Score=31.91 Aligned_cols=49 Identities=27% Similarity=0.231 Sum_probs=37.5
Q ss_pred HHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCEEEEecC
Q 003044 63 IQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (854)
Q Consensus 63 l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vilrpG 117 (854)
..++|++|++.|-+ -|..++.-|. +-+..+.+=++.|.++||.+|++.|
T Consensus 88 ~~mL~d~G~~~vii-----GHSERR~~f~-Etd~~v~~Kv~~al~~gl~pIvCvG 136 (260)
T PRK14566 88 GQMLKDAGCRYVII-----GHSERRRMYG-ETSNIVAEKFAAAQKHGLTPILCVG 136 (260)
T ss_pred HHHHHHcCCCEEEE-----CcccccCCCC-cCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 45789999998887 5665555543 3345667788899999999999987
No 220
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=21.20 E-value=9.8e+02 Score=25.22 Aligned_cols=50 Identities=20% Similarity=0.315 Sum_probs=33.4
Q ss_pred CCCCCHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCEEE
Q 003044 51 YPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAH 113 (854)
Q Consensus 51 y~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vi 113 (854)
.++.+++ .++.|+++|++++.+- . =| +|||. ..-|.+.++.+++.|+..+
T Consensus 58 ~f~~~~~----~~~~l~~~G~d~~~la--N-NH-----~fD~G-~~gl~~t~~~l~~a~i~~~ 107 (239)
T smart00854 58 NFRAPPE----NAAALKAAGFDVVSLA--N-NH-----SLDYG-EEGLLDTLAALDAAGIAHV 107 (239)
T ss_pred EecCCHH----HHHHHHHhCCCEEEec--c-Cc-----ccccc-hHHHHHHHHHHHHCCCCEe
Confidence 3456665 5778999999998872 1 12 34543 3457777888888888754
No 221
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=21.04 E-value=79 Score=33.17 Aligned_cols=76 Identities=22% Similarity=0.334 Sum_probs=50.6
Q ss_pred EEeEEEEEEeeCC-CCCHhHHHHHHHHHHHCCCCEEEeccccCccC--------CCCC----ceeecccchHHHHHHHHH
Q 003044 40 QRRILFSGSIHYP-RSTPDMWEDLIQKAKDGGLDVIETYVFWNVHE--------PSPG----NYNFEGRYDLVRFIKTIQ 106 (854)
Q Consensus 40 ~~~~~~sg~~Hy~-r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hE--------p~~G----~ydf~g~~dl~~fl~la~ 106 (854)
+-+.+.-|.-+.. ++|.+.|.+.++++++.| ..+.++|.-.| -.++ ..++.|..+|..++.+.+
T Consensus 106 ~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~---~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~ 182 (247)
T PF01075_consen 106 PYIGINPGASWPSKRWPAEKWAELIERLKERG---YRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALIS 182 (247)
T ss_dssp SEEEEE---SSGGGS--HHHHHHHHHHHCCCT----EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHHH
T ss_pred CeEEEeecCCCccccCCHHHHHHHHHHHHhhC---ceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHHh
Confidence 3344444444443 479999999999999998 45667887666 1122 588888899999999999
Q ss_pred HcCCEEEEecCc
Q 003044 107 KAGLYAHLRIGP 118 (854)
Q Consensus 107 ~~gL~vilrpGP 118 (854)
...+.|-...||
T Consensus 183 ~a~~~I~~Dtg~ 194 (247)
T PF01075_consen 183 RADLVIGNDTGP 194 (247)
T ss_dssp TSSEEEEESSHH
T ss_pred cCCEEEecCChH
Confidence 999988888775
No 222
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=20.96 E-value=2.7e+02 Score=31.25 Aligned_cols=59 Identities=14% Similarity=0.153 Sum_probs=43.9
Q ss_pred CHhHHHHHHHHHHHCCCCEEEeccc--cCc--c-CC------------------------CCCceeecccchHHHHHHHH
Q 003044 55 TPDMWEDLIQKAKDGGLDVIETYVF--WNV--H-EP------------------------SPGNYNFEGRYDLVRFIKTI 105 (854)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv~--Wn~--h-Ep------------------------~~G~ydf~g~~dl~~fl~la 105 (854)
+.+..++.|+.|...++|++..++- |.+ . .| ..|.|.- .++.++++.|
T Consensus 15 ~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~---~di~eiv~yA 91 (326)
T cd06564 15 SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTK---EEFKELIAYA 91 (326)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccH---HHHHHHHHHH
Confidence 7889999999999999999997653 222 1 11 1223332 4999999999
Q ss_pred HHcCCEEEEec
Q 003044 106 QKAGLYAHLRI 116 (854)
Q Consensus 106 ~~~gL~vilrp 116 (854)
+++|+.||-.+
T Consensus 92 ~~rgI~vIPEI 102 (326)
T cd06564 92 KDRGVNIIPEI 102 (326)
T ss_pred HHcCCeEeccC
Confidence 99999998653
No 223
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=20.66 E-value=1.4e+02 Score=31.61 Aligned_cols=59 Identities=10% Similarity=-0.063 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHCCCCEEEeccccCccC-CCCCceeecccchHHHHHHHHHHcCCEEEEec
Q 003044 57 DMWEDLIQKAKDGGLDVIETYVFWNVHE-PSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (854)
Q Consensus 57 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hE-p~~G~ydf~g~~dl~~fl~la~~~gL~vilrp 116 (854)
+.+++.++.++++|..+|.+...+.--+ +.+-.++ .-...+.++.++|++.|+.+.+.|
T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~-~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARA-TLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHH-HHHHHHHHHHHHHHhcCCEEEEEE
Confidence 6788889999999999998643221000 0010010 111357888899999999999886
No 224
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=20.53 E-value=1.6e+02 Score=33.63 Aligned_cols=71 Identities=18% Similarity=0.228 Sum_probs=44.7
Q ss_pred CCEEeEEEEEEeeC---------------------CCCCHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeecccc
Q 003044 38 NGQRRILFSGSIHY---------------------PRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRY 96 (854)
Q Consensus 38 dG~~~~~~sg~~Hy---------------------~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~ 96 (854)
.+++.++.|.+-|| .|+..+.-++.|++.++.|..-+ .|.=+.=...-|.+|
T Consensus 139 ~~~~~i~~s~~aH~S~~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~--~vvat~Gtt~~Ga~D----- 211 (373)
T PF00282_consen 139 IPKPVIYVSEQAHYSIEKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPF--AVVATAGTTNTGAID----- 211 (373)
T ss_dssp CSSEEEEEETTS-THHHHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEE--EEEEEBS-TTTSBB------
T ss_pred ccccccccccccccHHHHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccce--eeeccCCCccccccc-----
Confidence 45677778877887 45566667777777788876321 222234445556666
Q ss_pred hHHHHHHHHHHcCCEEEEe
Q 003044 97 DLVRFIKTIQKAGLYAHLR 115 (854)
Q Consensus 97 dl~~fl~la~~~gL~vilr 115 (854)
|+.++.++|+++++++.+.
T Consensus 212 ~l~~i~~i~~~~~~wlHVD 230 (373)
T PF00282_consen 212 PLEEIADICEKYNIWLHVD 230 (373)
T ss_dssp SHHHHHHHHHHCT-EEEEE
T ss_pred CHHHHhhhccccceeeeec
Confidence 8888889999888877765
No 225
>PRK07534 methionine synthase I; Validated
Probab=20.25 E-value=1e+03 Score=26.99 Aligned_cols=73 Identities=11% Similarity=0.006 Sum_probs=42.6
Q ss_pred HHHHHHHHHc-CCEEEEecCceeeeecCCCCCCcccccCCCeEeecCChh-HHHHHHHHHHHHHHHHhhcccccccCCce
Q 003044 99 VRFIKTIQKA-GLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEP-FKRAMQGFTEKIVNLMKSENLFESQGGPI 176 (854)
Q Consensus 99 ~~fl~la~~~-gL~vilrpGPyi~aEw~~GGlP~WL~~~p~~~~Rt~d~~-y~~~~~~~~~~l~~~l~~~~~~~~~gGpI 176 (854)
..++++.... .+.+++.| |.|.|.|... .. .-..+|. |.+.+++|. ..|=.|
T Consensus 221 ~~l~~~~~~~~~~pl~vyP---------NaG~p~~~~~--~~-~~~~~p~~~~~~~~~~~--------------~~Ga~i 274 (336)
T PRK07534 221 RTVLGFTAQGPERPIIAKG---------NAGIPKYVDG--HI-HYDGTPELMAEYAVLAR--------------DAGARI 274 (336)
T ss_pred HHHHHHHHhcCCCeEEEEc---------CCCCcccCCC--cc-ccCCCHHHHHHHHHHHH--------------HcCCcE
Confidence 5555654443 56777886 7899988642 22 1223443 334444442 124466
Q ss_pred EEecccccccccccccCcccHHHHHHHHHHHHH
Q 003044 177 ILSQIENEYGAQSKLLGAAGHNYMTWAAKMAVE 209 (854)
Q Consensus 177 I~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~ 209 (854)
|+ |+ +| ...+|++.|++++..
T Consensus 275 IG-------GC----CG-TtP~hI~~la~~l~~ 295 (336)
T PRK07534 275 IG-------GC----CG-TMPEHLAAMRAALDA 295 (336)
T ss_pred Ee-------ee----cC-CCHHHHHHHHHHHcc
Confidence 64 33 45 789999999998854
No 226
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=20.25 E-value=3.6e+02 Score=25.50 Aligned_cols=67 Identities=16% Similarity=0.274 Sum_probs=0.0
Q ss_pred EEEEEEEecCCCCcccccCCCCceEEeCCcceEEEEEECCEEEEEEEcccccceeEEEeeeeccCC-CCEEEEEEec
Q 003044 471 YLWYITSVDIGSSESFLHGGELPTLIVQSTGHALHIFINGQLSGSAFGTREARRFMYTGKVNLRAG-RNKIALLSVA 546 (854)
Q Consensus 471 Yl~Y~t~i~~~~~~~~~~~g~~~~L~i~~~~D~~~VfVng~~~G~~~~~~~~~~~~~~~~i~l~~g-~n~L~ILven 546 (854)
.+.+++.|..+.++.+ ++.+ ...|.+.+||||+.+-...+... ........+.|.+| .+.|.|...+
T Consensus 45 ~~~~~g~i~~~~~G~y-------~f~~-~~~~~~~l~Idg~~vid~~~~~~-~~~~~~~~v~l~~g~~~~i~v~y~~ 112 (136)
T smart00758 45 SVRWTGYLKPPEDGEY-------TFSI-TSDDGARLWIDGKLVIDNWGKHE-ARPSTSSTLYLLAGGTYPIRIEYFE 112 (136)
T ss_pred EEEEEEEEECCCCccE-------EEEE-EcCCcEEEEECCcEEEcCCccCC-CccccceeEEEeCCcEEEEEEEEEe
No 227
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=20.22 E-value=1.8e+02 Score=35.66 Aligned_cols=54 Identities=24% Similarity=0.369 Sum_probs=45.1
Q ss_pred eeCCCCCHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCEEEE
Q 003044 49 IHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHL 114 (854)
Q Consensus 49 ~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~vil 114 (854)
+=|.|+|.+.-+..++++++.|+..|+++...|.. +++...++.|+++|+.+..
T Consensus 89 vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~------------~~~~~ai~~ak~~G~~~~~ 142 (593)
T PRK14040 89 LGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP------------RNLETALKAVRKVGAHAQG 142 (593)
T ss_pred eccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH------------HHHHHHHHHHHHcCCeEEE
Confidence 45777788888889999999999999998776653 3788999999999998643
No 228
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=20.12 E-value=4.3e+02 Score=32.10 Aligned_cols=70 Identities=27% Similarity=0.520 Sum_probs=48.8
Q ss_pred CCEEeEEEEEEee--CCC-CCHhHHHHHHHHHHHCCCCEEEeccc-----------cCccCCCCCceeecccchHHHHHH
Q 003044 38 NGQRRILFSGSIH--YPR-STPDMWEDLIQKAKDGGLDVIETYVF-----------WNVHEPSPGNYNFEGRYDLVRFIK 103 (854)
Q Consensus 38 dG~~~~~~sg~~H--y~r-~~~~~W~~~l~k~ka~G~N~V~~yv~-----------Wn~hEp~~G~ydf~g~~dl~~fl~ 103 (854)
+|++. .+.|.+- |-| +.+|+=++.+++++.+|++ +|.. |-- -|+-+-..-|..+|.
T Consensus 12 ~g~r~-fiCGVvEGFYGRPWt~EQRK~LFrrl~~~gl~---tYlYAPKDDyKHR~~WRE------lY~vEEa~~L~~Li~ 81 (891)
T KOG3698|consen 12 VGNRK-FICGVVEGFYGRPWTPEQRKHLFRRLNQLGLT---TYLYAPKDDYKHRSLWRE------LYNVEEATYLRNLIE 81 (891)
T ss_pred cccce-eEEEeeccccCCCCCHHHHHHHHHHHHhcccc---eeeecccchhHHHHHHHH------HhhhHHHHHHHHHHH
Confidence 44444 4556554 778 5999999999999999998 5542 321 233333347888999
Q ss_pred HHHHcCCEEEEecC
Q 003044 104 TIQKAGLYAHLRIG 117 (854)
Q Consensus 104 la~~~gL~vilrpG 117 (854)
.|+|+++..+-.+.
T Consensus 82 aAke~~i~F~YAiS 95 (891)
T KOG3698|consen 82 AAKENNINFVYAIS 95 (891)
T ss_pred HHHhcCceEEEEcC
Confidence 99999998775543
No 229
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=20.01 E-value=1.9e+02 Score=33.72 Aligned_cols=63 Identities=19% Similarity=0.137 Sum_probs=43.5
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEeccccCccCCCCCceeecccchHHHHHHHHHHcCCEE-EEecC
Q 003044 54 STPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYA-HLRIG 117 (854)
Q Consensus 54 ~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~gL~v-ilrpG 117 (854)
...+.-+..|+.+|+.|+|+|-+++.=.---+.+-.|.= -..|-...++++.+.|..+ +|..|
T Consensus 190 ~~~~~~~~lLd~ak~l~lnvvGvsfHvGSgc~d~~~y~~-Ai~dAr~vfd~g~e~Gf~m~~LdiG 253 (448)
T KOG0622|consen 190 CSLDNCRHLLDMAKELELNVVGVSFHVGSGCTDLQAYRD-AISDARNVFDMGAELGFEMDILDIG 253 (448)
T ss_pred CCHHHHHHHHHHHHHcCceEEEEEEEecCCCCCHHHHHH-HHHHHHHHHHHHHhcCceEEEeecC
Confidence 466778889999999999999997654322222222221 1246677788899999984 67765
Done!