BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 003047
         (854 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1P90|A Chain A, The Three-Dimensional Structure Of The Core Domain Of Nafy
           From Azotobacter Vinelandii Determined At 1.8 Resolution
          Length = 145

 Score = 33.5 bits (75), Expect = 0.54,   Method: Composition-based stats.
 Identities = 17/30 (56%), Positives = 19/30 (63%), Gaps = 4/30 (13%)

Query: 733 GEDCEQWRVEKIIDCEELN----GGPAAAK 758
            ED   WRVE+I DC+ L     GGPAAAK
Sbjct: 54  AEDKNAWRVEQIQDCQVLYVVSIGGPAAAK 83


>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
           Fragment
 pdb|3FP3|A Chain A, Crystal Structure Of Tom71
 pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
           Fragment
          Length = 537

 Score = 32.0 bits (71), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 28/56 (50%)

Query: 780 LYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKL 835
            Y NI+A +   G+ E+   F T+AL I P  ++A L     +  LG   +A+  L
Sbjct: 61  FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL 116


>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
           Tail Indicating Conformational Plasticity
          Length = 533

 Score = 32.0 bits (71), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 28/56 (50%)

Query: 780 LYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKL 835
            Y NI+A +   G+ E+   F T+AL I P  ++A L     +  LG   +A+  L
Sbjct: 57  FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL 112


>pdb|2OBE|A Chain A, Crystal Structure Of Chimpanzee Adenovirus (Type 68SIMIAN
           25) MAJOR Coat Protein Hexon
 pdb|2OBE|B Chain B, Crystal Structure Of Chimpanzee Adenovirus (Type 68SIMIAN
           25) MAJOR Coat Protein Hexon
 pdb|2OBE|C Chain C, Crystal Structure Of Chimpanzee Adenovirus (Type 68SIMIAN
           25) MAJOR Coat Protein Hexon
          Length = 932

 Score = 32.0 bits (71), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 162 YAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVG 218
           YA +   L+  ++ ++P+DE+T L +   + DV +  H   R     +YL   FS G
Sbjct: 874 YANSAHALDMNFE-VDPMDESTLLYVVFEVFDV-VRVHQPHRGVIEAVYLRTPFSAG 928


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.132    0.377 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,851,807
Number of Sequences: 62578
Number of extensions: 764262
Number of successful extensions: 1822
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1818
Number of HSP's gapped (non-prelim): 7
length of query: 854
length of database: 14,973,337
effective HSP length: 107
effective length of query: 747
effective length of database: 8,277,491
effective search space: 6183285777
effective search space used: 6183285777
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)