BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003047
(854 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A4IFB6|CNOTA_BOVIN CCR4-NOT transcription complex subunit 10 OS=Bos taurus GN=CNOT10
PE=2 SV=1
Length = 743
Score = 172 bits (437), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 162/554 (29%), Positives = 257/554 (46%), Gaps = 101/554 (18%)
Query: 320 KLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKL 379
K K+ YKVR + ++LK KRE+K MN A +S+ +LFLKS EY R N+RKA+KL
Sbjct: 215 KSKIHQYKVRAYIQMKSLKACKREIKSVMNTA--GNSAPSLFLKSNFEYLRGNYRKAVKL 272
Query: 380 LLALSN--------RTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASL----- 426
L + SN +T + MF NNLGCI++ ++K++ + KAL + ++
Sbjct: 273 LNS-SNIAEHPGFMKTGECLRCMFWNNLGCIHFAMSKHNLGIFYFKKALQENDNVCAQLS 331
Query: 427 -------RKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLL 479
+K + T +K + YNCG+Q L G+P+ A C ++ V++ P L
Sbjct: 332 AGSTDPGKKFSGRPMCTLLTNKRYELLYNCGIQLLHIGRPLAAFECLIEAVQVYHANPRL 391
Query: 480 WLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKD 539
WLRLAECC+ A + + L + ++G+G R +V+ +N
Sbjct: 392 WLRLAECCIAANKGTSEQETKGLPSKKGIVQSIVGQGYHRKIVLASQSIQN--------- 442
Query: 540 DSSLGSDGQ----PKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGAS 595
++ +DGQ P SM A CL NAL LL P+ ++ + +
Sbjct: 443 --TVYNDGQSSAIPVASMEFAAICLRNALLLL--PE--------------DQQDPKQENG 484
Query: 596 SKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVC-------- 647
SKN N LG +G++ D +S S+ D C
Sbjct: 485 SKNSNQ-------------LGGNAESGESSD---------ACSSKSHDGDKCIPAPPSSP 522
Query: 648 --RRENQMIKQALLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALC 705
++E + +K ++LA AYV L + + + AL A LL+ P S FLGH+YAAEAL
Sbjct: 523 LRKQELENLKCSILACSAYVALALGDNLMALNHADKLLQQPKLSGSLKFLGHLYAAEALI 582
Query: 706 LLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDS 765
L+R +A H + + L S + +Q + + E +G A PS S
Sbjct: 583 SLDRISDAITHLNP--ENVTDVSLGISSNEQDQGSDKGENEAMESSGKRAPQCYPSSVSS 640
Query: 766 RDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSIL-PRST--EATLTAIYVD 822
AR + N+ + + ++ E+++A + QA S++ P+ EA L A+Y++
Sbjct: 641 ----------ARTVMLFNLGSAYCLRSEYDKARKCLHQAASMIHPKEVPPEAILLAVYLE 690
Query: 823 LMLGKSQEALAKLK 836
L G +Q AL +K
Sbjct: 691 LQNGNTQLALQIIK 704
Score = 84.3 bits (207), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 90/196 (45%), Gaps = 36/196 (18%)
Query: 21 SGVLSVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDP 80
SG+ L+ A F + +D CL L L D DD KI+ N A+AE+F+ T
Sbjct: 21 SGITDQEKELSTSAFQAFTAGNYDVCLQHLTCLQDINKDDYKIILNTAVAEFFKSNQTTT 80
Query: 81 KKLLEALNNVKNKSEELARATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYM 140
L + LN +KN+ + E+ +G +
Sbjct: 81 DSLRQTLNQLKNQ----VHSAVEEMDG--------------------------------L 104
Query: 141 DEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHD 200
D+ + S+ N AVI +HL +Y +A+SV E LYQ IEP +E A +C LL+D+ + +
Sbjct: 105 DDVENSMLYYNQAVILYHLRQYTEAISVGEKLYQFIEPFEEKFAQAVCFLLVDLYILTYQ 164
Query: 201 AFRSADVLIYLEKAFS 216
A ++ +L LEK S
Sbjct: 165 AEKALHLLAVLEKMIS 180
>sp|Q9H9A5|CNOTA_HUMAN CCR4-NOT transcription complex subunit 10 OS=Homo sapiens GN=CNOT10
PE=1 SV=1
Length = 744
Score = 172 bits (435), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 159/544 (29%), Positives = 257/544 (47%), Gaps = 81/544 (14%)
Query: 320 KLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKL 379
K K+ YKVR + ++LK KRE+K MN A +S+ +LFLKS EY R N+RKA+KL
Sbjct: 215 KSKIHQYKVRAYIQMKSLKACKREIKSVMNTA--GNSAPSLFLKSNFEYLRGNYRKAVKL 272
Query: 380 LLALSN--------RTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASL----- 426
L + SN +T + MF NNLGCI++ ++K++ + KAL + ++
Sbjct: 273 LNS-SNIAEHPGFMKTGECLRCMFWNNLGCIHFAMSKHNLGIFYFKKALQENDNVCAQLS 331
Query: 427 -------RKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLL 479
+K + T +K + YNCG+Q L G+P+ A C ++ V++ P L
Sbjct: 332 AGSTDPGKKFSGRPMCTLLTNKRYELLYNCGIQLLHIGRPLAAFECLIEAVQVYHANPRL 391
Query: 480 WLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKD 539
WLRLAECC+ A + + L + ++G+G R +V+ +N
Sbjct: 392 WLRLAECCIAANKGTSEQETKGLPSKKGIVQSIVGQGYHRKIVLASQSIQN--------- 442
Query: 540 DSSLGSDGQ----PKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGAS 595
++ +DGQ P SM A CL NAL LL P+ E+ + +
Sbjct: 443 --TVYNDGQSSAIPVASMEFAAICLRNALLLL--PE--------------EQQDPKQENG 484
Query: 596 SKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIK 655
+KN N ++ S+ S + +GD +S + ++E + +K
Sbjct: 485 AKNSNQLGGNTESSESSETCSSKSHDGDKFIPAPPSS------------PLRKQELENLK 532
Query: 656 QALLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAE 715
++LA AYV L + + + AL A LL+ P S FLGH+YAAEAL L+R +A
Sbjct: 533 CSILACSAYVALALGDNLMALNHADKLLQQPKLSGSLKFLGHLYAAEALISLDRISDAIT 592
Query: 716 HFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEE 775
H + + L S + +Q + + E +G A PS +S
Sbjct: 593 HLNP--ENVTDVSLGISSNEQDQGSDKGENEAMESSGKRAPQCYPSSVNS---------- 640
Query: 776 ARGTLYVNIAAMFAMQGEFERAHHFVTQALSIL-PRST--EATLTAIYVDLMLGKSQEAL 832
AR + N+ + + ++ E+++A + QA S++ P+ EA L A+Y++L G +Q AL
Sbjct: 641 ARTVMLFNLGSAYCLRSEYDKARKCLHQAASMIHPKEVPPEAILLAVYLELQNGNTQLAL 700
Query: 833 AKLK 836
+K
Sbjct: 701 QIIK 704
Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 90/196 (45%), Gaps = 36/196 (18%)
Query: 21 SGVLSVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDP 80
SG+ L+ A F S +D CL L L D DD KI+ N A+AE+F+ T
Sbjct: 21 SGITDQEKELSTNAFQAFTSGNYDACLQHLACLQDINKDDYKIILNTAVAEFFKSNQTTT 80
Query: 81 KKLLEALNNVKNKSEELARATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYM 140
L + LN +KN+ + E+ +G +
Sbjct: 81 DNLRQTLNQLKNQ----VHSAVEEMDG--------------------------------L 104
Query: 141 DEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHD 200
D+ + S+ N AVI +HL +Y +A+SV E LYQ IEP +E A +C LL+D+ + +
Sbjct: 105 DDVENSMLYYNQAVILYHLRQYTEAISVGEKLYQFIEPFEEKFAQAVCFLLVDLYILTYQ 164
Query: 201 AFRSADVLIYLEKAFS 216
A ++ +L LEK S
Sbjct: 165 AEKALHLLAVLEKMIS 180
>sp|Q6NU53|CNOAB_XENLA CCR4-NOT transcription complex subunit 10-B OS=Xenopus laevis
GN=cnot10-b PE=2 SV=1
Length = 748
Score = 171 bits (434), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 161/554 (29%), Positives = 255/554 (46%), Gaps = 83/554 (14%)
Query: 311 DRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYAR 370
D ++ K K+ YKVR + ++LK KRE+K MN + +S+ +LFLKS EY R
Sbjct: 209 DGGVNVEAAKSKIHQYKVRAYIQMKSLKACKREIKSVMNTS--GNSAPSLFLKSNFEYLR 266
Query: 371 RNHRKAIKLLLALSN--------RTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKAL-- 420
N+RKA+KLL + SN +T + MF NNLGCI++ + K++ + KAL
Sbjct: 267 GNYRKAVKLLNS-SNIAEYPGFMKTGECVRCMFWNNLGCIHFAMGKHNLGLFYFKKALHE 325
Query: 421 ----------SNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSS 470
NS +K + T +K + YNCG+Q L G+P+ A ++
Sbjct: 326 NDNACAQLPSENSDPGKKFSGRPMCTLLTNKRYELLYNCGIQLLHIGRPLAAFEYLVEAV 385
Query: 471 LVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKN 530
V++ P LWLRLAECC+ A + + L + ++G+G R +V+ +N
Sbjct: 386 QVYHSNPRLWLRLAECCIAANKGTSEQETKGLPSKKGIVQSIVGQGYHRKIVLASQSVQN 445
Query: 531 GHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESES 590
+ E S P SM A CL NAL LL P + + E+
Sbjct: 446 LLYNDGE-------SSAIPVASMEFAAICLRNALLLL------------PEDQLETKQEN 486
Query: 591 SEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRE 650
ASS+ +N S G+ + K+ +G + +S + R+E
Sbjct: 487 GSKASSQTVNTDSS-----------GESSDVCSNKNHEGDKFIPAPPSS-----PLRRQE 530
Query: 651 NQMIKQALLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRP 710
+ ++ ++LA +AYV L + + + AL A LL+ P S FLGH+YAAEAL L+R
Sbjct: 531 VENLRCSVLACIAYVALALGDNLMALNHAEKLLQQPRLSGSLKFLGHLYAAEALISLDRI 590
Query: 711 KEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMF 770
+A H + + L S + EQ G +N P +S
Sbjct: 591 SDAITHLNP--ENVTDVSLGVSSNEQEQ--------------GSDKGEN-EPMESAGKQI 633
Query: 771 PK--PE---EARGTLYVNIAAMFAMQGEFERAHHFVTQALSIL-PRST--EATLTAIYVD 822
P+ P AR + N+ + + ++ E+++A + QA S++ P+ EA L A+Y++
Sbjct: 634 PQCYPSSVTSARTMMLFNLGSAYCLRSEYDKARKCLHQAASMIHPKEIPPEAILLAVYLE 693
Query: 823 LMLGKSQEALAKLK 836
L G +Q AL +K
Sbjct: 694 LQNGNTQLALQIIK 707
Score = 70.9 bits (172), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 90/193 (46%), Gaps = 36/193 (18%)
Query: 21 SGVLSVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDP 80
SG+ L++ A F + ++ CL L +L + DD K++ N A+AE+++ T
Sbjct: 21 SGISDQEKELSRSALQAFTAGNYEACLQHLGELKEINKDDYKVILNAAVAEFYKSDKTTT 80
Query: 81 KKLLEALNNVKNKSEELARATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYM 140
L + LN ++N+ V + V +S +
Sbjct: 81 DLLKQTLNQLRNE-------------------------------VHSAVDEMDS-----L 104
Query: 141 DEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHD 200
D+ + S+ N AVI ++L ++ +A+SV E LYQ IEP +E A +C LL+D+ L
Sbjct: 105 DDVENSMLYYNQAVILYYLRQHMEAISVGEKLYQFIEPFEEKFAHAVCFLLVDLYLLTFQ 164
Query: 201 AFRSADVLIYLEK 213
++ +L+ LEK
Sbjct: 165 TEKALHLLVVLEK 177
>sp|Q08CL8|CNOTA_DANRE CCR4-NOT transcription complex subunit 10 OS=Danio rerio GN=cnot10
PE=2 SV=1
Length = 624
Score = 170 bits (430), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 162/552 (29%), Positives = 251/552 (45%), Gaps = 78/552 (14%)
Query: 320 KLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKL 379
K K+ YKVR + ++LK KRE+K MN + +S+ +LFLKS EY R N+RKA+KL
Sbjct: 89 KSKMHQYKVRAYIQMKSLKACKREIKSVMNTS--GNSAPSLFLKSNFEYLRGNYRKAVKL 146
Query: 380 LLALSN--------RTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKAL----------- 420
L + SN +T + MF NNLGCI++ + K++ + KAL
Sbjct: 147 LNS-SNIAEHPGPLKTGECVRCMFWNNLGCIHFAMGKHNLGLFYFKKALQENDHTCAQIG 205
Query: 421 --SNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPL 478
SN+ + +K + + +K + YNCG+Q L G+P+ A C ++ V++ P
Sbjct: 206 DGSNAQASKKFSGIPMCALLANKRYELLYNCGIQLLHIGRPLAAFECLMEAVQVYHSNPR 265
Query: 479 LWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEK 538
LWLRLAECC+ A + + L + V+G+G R +V+ +N
Sbjct: 266 LWLRLAECCITANKGSSEQETKGLPSKKGIVQAVVGQGYHRKIVLASQSTQNTIY----- 320
Query: 539 DDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKN 598
S S P SM A CL NAL LL + SK P N S S+S S
Sbjct: 321 --SEAQSAAIPVASMEFAAICLRNALLLLPEHQQHDSK---PDNGSKSYSQSGGTES--- 372
Query: 599 LNHKSLSSLDSKISVGLGQVTANG-DAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQA 657
G T++ K Q+G + +S + ++E + ++ +
Sbjct: 373 -----------------GSETSDACSGKTQEGDKFIPAAPSS-----PLRKQEVENLRCS 410
Query: 658 LLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHF 717
+LA AYV L + + + AL A LL S FLGH+YAAEAL L+ +A H
Sbjct: 411 ILACSAYVALALGDNLMALNHAEKLLHQAKLSGSLKFLGHLYAAEALISLDGISDAIAHL 470
Query: 718 SMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEAR 777
+ + L S + +Q + ++ E +G PS S AR
Sbjct: 471 NP--ENVTDVSLGVSSSEQDQGSDKGDLEPVESSGKQTPLCYPSSVSS----------AR 518
Query: 778 GTLYVNIAAMFAMQGEFERAHHFVTQALSILPRS---TEATLTAIYVDLMLGKSQEALAK 834
T+ N+ + + ++ E+E+A + QA S++ EA L +Y++L G +Q AL
Sbjct: 519 ATMLFNLGSAYCLRSEYEKARKCLHQAASMVNTKEIPPEAILLGVYLELQNGNTQLALQI 578
Query: 835 LKYCNHVRFLPS 846
+K + LPS
Sbjct: 579 IK---RNQLLPS 587
>sp|Q5XIA4|CNOTA_RAT CCR4-NOT transcription complex subunit 10 OS=Rattus norvegicus
GN=Cnot10 PE=2 SV=1
Length = 744
Score = 169 bits (428), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 211/829 (25%), Positives = 350/829 (42%), Gaps = 158/829 (19%)
Query: 21 SGVLSVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDP 80
SGV L+ A F S +D CL L L D DD KI+ N A+AE+F++ T
Sbjct: 21 SGVTDQEKELSTSAFQAFTSGNYDACLQHLACLQDINKDDYKIILNTAVAEFFKNNQTTT 80
Query: 81 KKLLEALNNVKNKSEELARATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYM 140
L + LN +KN+ + E+ +G +
Sbjct: 81 DNLRQTLNQLKNQ----VHSAVEEMDG--------------------------------L 104
Query: 141 DEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHD 200
D+ + S+ N AVI +HL ++ +A++V E LYQ IEP +E A +C LL+D+ + H
Sbjct: 105 DDVENSMLYYNQAVILYHLRQHTEAIAVGEKLYQFIEPFEEKFAQAVCFLLVDLYILTHQ 164
Query: 201 AFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASN--SDLAA 258
A ++ +L LEK S G N+ G N+S+ D SN ++ AA
Sbjct: 165 AEKALHLLAVLEKMISQGSGNKNGKSETG---------------NNSSKDGSNPKAESAA 209
Query: 259 TVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVD 318
+ A+++ + + ++ G + + E+ + S
Sbjct: 210 LIEAAKSKIHQ-----------------YKVRGYIQMKSLKACKREIKSVMNTAGNSAPS 252
Query: 319 LKLKLQLYKVRFLLLTRNLKHAKREVKL--AMNIARGKDSSLALFLKSQ--LEYARRNHR 374
L L K F L N + A VKL + NIA F+K+ L N+
Sbjct: 253 LFL-----KSNFEYLRGNYRKA---VKLLNSSNIAEHPG-----FMKTGECLRCMFWNNL 299
Query: 375 KAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKL 434
I ++ N +GI Y++ A +V + N+ +K +
Sbjct: 300 GCIHFAMSKHN---LGI----------FYFKKALQENDNVCAQLSAGNTDPGKKFSGRPM 346
Query: 435 LTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKG 494
T +K + YNCG+Q L G+P+ A C ++ V++ P LWLRLAECC+ A +
Sbjct: 347 CTLLANKRYELLYNCGIQLLHVGRPLAAFECLVEAVQVYHANPRLWLRLAECCIAANKGT 406
Query: 495 LVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQ----PK 550
+ L + ++G+G R +V+ +N ++ +DGQ P
Sbjct: 407 SEQETKGLPTKKGIVQSIVGQGYHRKIVLASQSIQN-----------TVYNDGQSSAIPV 455
Query: 551 LSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSK 610
S+ A CL NAL LL P+ E+ + + SK+ + ++ S+
Sbjct: 456 ASVEFAAICLRNALLLL--PE--------------EQQDPKQENGSKSSSQLGGNAESSE 499
Query: 611 ISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEME 670
S + +GD ++I S + ++E + +K ++LA AYV L +
Sbjct: 500 SSETCSSKSHDGD----------KLIPAPPS--SPLRKQELENLKCSILACSAYVALALG 547
Query: 671 NPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLP 730
+ + AL A LL+ P S FLGH+YAAEAL L+R +A H + + L
Sbjct: 548 DNLMALNHADQLLQQPKLSGSLKFLGHLYAAEALISLDRISDAITHLNP--ENVTDVSLG 605
Query: 731 FSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAM 790
S + +Q + + E +G A PS +S AR + N+ + + +
Sbjct: 606 ISSNEQDQGSDKGENEAMESSGKRAPQCYPSSVNS----------ARTVMLFNLGSAYCL 655
Query: 791 QGEFERAHHFVTQALSIL-PRST--EATLTAIYVDLMLGKSQEALAKLK 836
+ E+++A + QA S++ P+ EA L A+Y++L G +Q AL +K
Sbjct: 656 RSEYDKARKCLHQAASMIHPKEVPPEAILLAVYLELQNGNTQLALQMIK 704
>sp|Q5ZIW2|CNOTA_CHICK CCR4-NOT transcription complex subunit 10 OS=Gallus gallus
GN=CNOT10 PE=2 SV=1
Length = 744
Score = 169 bits (428), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 163/563 (28%), Positives = 256/563 (45%), Gaps = 92/563 (16%)
Query: 320 KLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKL 379
K K+ YKVR + ++LK KRE+K MN A +S+ +LFLKS EY R N+RKA+KL
Sbjct: 215 KSKIHQYKVRAYIQMKSLKACKREIKSVMNTA--GNSAPSLFLKSNFEYLRGNYRKAVKL 272
Query: 380 LLALSNRTEMG-------ISSMFNNNLGCIYYQLAKYHTSSVFLSKALS----------- 421
L + + G + MF NNLGCI++ + K++ + KAL
Sbjct: 273 LNSANIAEHPGFMKTGECLRCMFWNNLGCIHFAMGKHNLGIFYFKKALQENDNACAQLGT 332
Query: 422 -NSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLW 480
+S +K + T +K + YNCG+Q L G+P+ A C ++ V++ P LW
Sbjct: 333 GSSDPGKKFSGRPMCTLLTNKRYELLYNCGIQLLHIGRPLAAFECLIEAVQVYHSNPRLW 392
Query: 481 LRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDD 540
LR+AECC+ A + + L + ++G+G R +V+ +N
Sbjct: 393 LRIAECCIAANKGTSEQETKGLPSKKGIVQSIVGQGYHRKIVLASQSIQN---------- 442
Query: 541 SSLGSDGQ----PKLSMPLARQCLLNALHLL--NYPDLNYSKFGLPSNS---SVEESESS 591
+ +DGQ P SM A CL NAL LL + + P+N + E SESS
Sbjct: 443 -VVYNDGQSSAIPVASMEFAAICLRNALLLLPEDQQEPKQENGSKPNNQLGGNTENSESS 501
Query: 592 EGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRREN 651
E S+K+ H+ + + S L ++E
Sbjct: 502 EACSNKS--HEGDKFIAAPPSSPLK-------------------------------KQEL 528
Query: 652 QMIKQALLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPK 711
+ ++ ++LA AYV L + + + AL A LL+ P S FLGH+YAAEAL L+R
Sbjct: 529 ENLRCSILACSAYVALALGDNLMALNHADKLLQQPKLSGSLKFLGHLYAAEALISLDRIS 588
Query: 712 EAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFP 771
+A H + + L S + +Q + + E +G PS S
Sbjct: 589 DAITHLNP--ENVTDVSLGISSNEQDQGSDKGENEAMESSGKQTPQCYPSSVTS------ 640
Query: 772 KPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSIL-PRST--EATLTAIYVDLMLGKS 828
AR + N+ + + ++ E+++A + QA S++ P+ EA L A+Y++L G +
Sbjct: 641 ----ARTMMLFNLGSAYCLRSEYDKARKCLHQAASLIHPKEIPPEAILLAVYLELQNGNT 696
Query: 829 QEALAKLKYCNHVRFLPSGLQLS 851
Q AL +K + LPS LS
Sbjct: 697 QLALQIIK---RNQLLPSVKTLS 716
Score = 83.6 bits (205), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 91/212 (42%), Gaps = 36/212 (16%)
Query: 5 DSTQSTAAGNTSGEDDSGVLSVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKIL 64
D A G SG+ L+ A F + +D CL L L D DD KI
Sbjct: 4 DKAADQGAEKHDGAGTSGITDQEKELSSSALQAFLAGNYDACLQHLNTLQDINKDDYKIT 63
Query: 65 HNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGNIGSKVGLGSKGSGV 124
N A+AE+ + T L + LN +KN+ + E+ +G
Sbjct: 64 LNTAVAEFCKSNQTTTDNLRQTLNQLKNQ----VHSAVEEMDG----------------- 102
Query: 125 VGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTA 184
+D+ + S+ N AVI +HL +Y +A+SV E LYQ IEP +E A
Sbjct: 103 ---------------LDDVENSMLYYNQAVILYHLRQYTEAISVGEKLYQFIEPFEEKFA 147
Query: 185 LQICLLLLDVALACHDAFRSADVLIYLEKAFS 216
+C LL+D+ L + A ++ +L LEK S
Sbjct: 148 QAVCFLLVDLYLLTYQAEKALHLLAVLEKMIS 179
>sp|Q4R350|CNOTA_MACFA CCR4-NOT transcription complex subunit 10 OS=Macaca fascicularis
GN=CNOT10 PE=2 SV=1
Length = 744
Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 158/544 (29%), Positives = 256/544 (47%), Gaps = 81/544 (14%)
Query: 320 KLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKL 379
K K+ Y VR + ++LK KRE+K MN A +S+ +LFLKS EY R N+RKA+KL
Sbjct: 215 KSKIHQYIVRAYIQMKSLKACKREIKSVMNTA--GNSAPSLFLKSNFEYLRGNYRKAVKL 272
Query: 380 LLALSN--------RTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASL----- 426
L + SN +T + MF NNLGCI++ ++K++ + KAL + ++
Sbjct: 273 LNS-SNIAEHPGFMKTGECLRCMFWNNLGCIHFAMSKHNLGIFYFKKALQENDNVCAQLS 331
Query: 427 -------RKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLL 479
+K + T +K + YNCG+Q L G+P+ A C ++ V++ P L
Sbjct: 332 AGSTDPGKKFSGRPMCTLLTNKRYELLYNCGIQLLHIGRPLAAFECLIEAVQVYHANPRL 391
Query: 480 WLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKD 539
WLRLAECC+ A + + L + ++G+G R +V+ +N
Sbjct: 392 WLRLAECCIAANKGTSEQETKGLPSKKGIVQSIVGQGYHRKIVLASQSIQN--------- 442
Query: 540 DSSLGSDGQ----PKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGAS 595
++ +DGQ P SM A CL NAL LL P+ E+ + +
Sbjct: 443 --TVYNDGQSSAIPVASMEFAAICLRNALLLL--PE--------------EQQDPKQENG 484
Query: 596 SKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIK 655
+KN N ++ S+ S + +GD +S + ++E + +K
Sbjct: 485 AKNSNQLGGNTESSESSETCSSKSHDGDKFIPAPPSS------------PLRKQELENLK 532
Query: 656 QALLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAE 715
++LA AYV L + + + AL A LL+ P S FLGH+YAAEAL L+R +A
Sbjct: 533 CSILACSAYVALALGDNLMALNHADKLLQQPKLSGSLKFLGHLYAAEALISLDRISDAIT 592
Query: 716 HFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEE 775
H + + L S + +Q + + E +G A PS +S
Sbjct: 593 HLNP--ENVTDVSLGISSNEQDQGSDKGENEAMESSGKRAPQCYPSSVNS---------- 640
Query: 776 ARGTLYVNIAAMFAMQGEFERAHHFVTQALSIL-PRST--EATLTAIYVDLMLGKSQEAL 832
AR + N+ + + ++ E+++A + QA S++ P+ EA L A+Y++L G +Q AL
Sbjct: 641 ARTVMLFNLGSAYCLRSEYDKARKCLHQAASMIHPKEVPPEAILLAVYLELQNGNTQLAL 700
Query: 833 AKLK 836
+K
Sbjct: 701 QIIK 704
Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 90/196 (45%), Gaps = 36/196 (18%)
Query: 21 SGVLSVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDP 80
SG+ L+ A F S +D CL L L D DD KI+ N A+AE+F+ T
Sbjct: 21 SGITDQEKELSTNAFQAFTSGNYDACLQHLACLQDINKDDYKIILNTAVAEFFKSNQTTT 80
Query: 81 KKLLEALNNVKNKSEELARATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYM 140
L + LN +KN+ + E+ +G +
Sbjct: 81 DNLRQTLNQLKNQ----VHSAVEEMDG--------------------------------L 104
Query: 141 DEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHD 200
D+ + S+ N AVI +HL +Y +A+SV E LYQ IEP +E A +C LL+D+ + +
Sbjct: 105 DDVENSMLYYNQAVILYHLRQYTEAISVGEKLYQFIEPFEEKFAQAVCFLLVDLYILTYQ 164
Query: 201 AFRSADVLIYLEKAFS 216
A ++ +L LEK S
Sbjct: 165 AEKALHLLAVLEKMIS 180
>sp|Q8BH15|CNOTA_MOUSE CCR4-NOT transcription complex subunit 10 OS=Mus musculus GN=Cnot10
PE=2 SV=1
Length = 744
Score = 167 bits (422), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 157/544 (28%), Positives = 257/544 (47%), Gaps = 81/544 (14%)
Query: 320 KLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKL 379
K K+ YKVR + ++LK KRE+K MN A +S+ +LFLKS EY R N+RKA+KL
Sbjct: 215 KSKIHQYKVRGYIQMKSLKACKREIKSVMNTA--GNSAPSLFLKSNFEYLRGNYRKAVKL 272
Query: 380 LLALSN--------RTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASL----- 426
L + SN +T + MF NNLGCI++ ++K++ + KAL + ++
Sbjct: 273 LNS-SNIAEHPGFMKTGECLRCMFWNNLGCIHFAMSKHNLGIFYFKKALQENDNVCAQLS 331
Query: 427 -------RKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLL 479
+K + T +K + YNCG+Q L G+P+ A C ++ V++ P L
Sbjct: 332 AGGTDPGKKFSGRPMCTLLTNKRYELLYNCGIQLLHVGRPLAAFECLIEAVQVYHANPRL 391
Query: 480 WLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKD 539
WLRLAECC+ A + + L + ++G+G R +V+ +N
Sbjct: 392 WLRLAECCIAANKGTSEQETKGLPTKKGIVQSIVGQGYHRKIVLASQSIQN--------- 442
Query: 540 DSSLGSDGQ----PKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGAS 595
++ +DGQ P S+ A CL NAL LL P+ E+ + +
Sbjct: 443 --TVYNDGQSSAIPVASVEFAAICLRNALLLL--PE--------------EQQDPKQENG 484
Query: 596 SKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIK 655
SK+ + ++ S+ S + +GD +S + ++E + +K
Sbjct: 485 SKSSSQLGGNTESSESSETCSSKSHDGDKFIPAPPSS------------PLRKQELENLK 532
Query: 656 QALLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAE 715
++LA AYV L + + + AL A LL+ P S FLGH+YAAEAL L+R +A
Sbjct: 533 CSILACSAYVALALGDNLMALNHADQLLQQPKLSGSLKFLGHLYAAEALISLDRISDAIT 592
Query: 716 HFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEE 775
H + + L S + +Q + + E +G A PS +S
Sbjct: 593 HLNP--ENVTDVSLGISSNEQDQGSDKGENEAMESSGKRAPQCYPSSVNS---------- 640
Query: 776 ARGTLYVNIAAMFAMQGEFERAHHFVTQALSIL-PRST--EATLTAIYVDLMLGKSQEAL 832
AR + N+ + + ++ E+++A + QA S++ P+ EA L A+Y++L G +Q AL
Sbjct: 641 ARTVMLFNLGSAYCLRSEYDKARKCLHQAASMIHPKEVPPEAILLAVYLELQNGNTQLAL 700
Query: 833 AKLK 836
+K
Sbjct: 701 QMIK 704
Score = 93.6 bits (231), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 114/251 (45%), Gaps = 53/251 (21%)
Query: 21 SGVLSVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDP 80
SGV L+ A F S +D CL L L D DD KI+ N A+AE+F++ T
Sbjct: 21 SGVTDQEKELSASALQAFTSGNYDACLQHLACLQDINKDDYKIILNTAVAEFFKNNQTTT 80
Query: 81 KKLLEALNNVKNKSEELARATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYM 140
L + LN +KN+ + E+ +G +
Sbjct: 81 DNLRQTLNQLKNQ----VHSAVEEMDG--------------------------------L 104
Query: 141 DEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHD 200
D+ + S+ N AVI +HL +Y +A+SV E LYQ IEP +E A +C LL+D+ + H
Sbjct: 105 DDVENSMLYYNQAVILYHLRQYTEAISVGEKLYQFIEPFEEKFAQAVCFLLVDLYILTHQ 164
Query: 201 AFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASN--SDLAA 258
A ++ +L LEK S G G G+ T N+S+ D SN ++ AA
Sbjct: 165 AEKALHLLAVLEKMISQG-----SGGKNGKNET----------GNNSSKDGSNPKAESAA 209
Query: 259 TVNASENALSR 269
+ A+++ + +
Sbjct: 210 LIEAAKSKIHQ 220
>sp|Q6DE97|CNOAA_XENLA CCR4-NOT transcription complex subunit 10-A OS=Xenopus laevis
GN=cnot10-a PE=2 SV=1
Length = 748
Score = 167 bits (422), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 165/564 (29%), Positives = 253/564 (44%), Gaps = 103/564 (18%)
Query: 311 DRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYAR 370
D + K K+ YKVR + ++LK KRE+K MN + +S+ +LFLKS EY R
Sbjct: 209 DGGVHVEAAKSKIHQYKVRAYIQMKSLKACKREIKSVMNTS--GNSAPSLFLKSNFEYLR 266
Query: 371 RNHRKAIKLLLALSN--------RTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKAL-- 420
N+RKA+KLL + SN +T + MF NNLGCI++ + K++ + KAL
Sbjct: 267 GNYRKAVKLLNS-SNIAEYPGFMKTGECVRCMFWNNLGCIHFAMGKHNLGLFYFKKALQE 325
Query: 421 ----------SNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSS 470
SN+ +K + T +K + YNCG+Q L G+P+ A ++
Sbjct: 326 NDNTCAQLPSSNTDPGKKFSSRPMCTLLTNKRYELLYNCGIQLLHIGRPLAAFEYLIEAV 385
Query: 471 LVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKN 530
V++ P LWLRLAECC+ A + + L + ++G+G R +V+ +N
Sbjct: 386 QVYHSNPRLWLRLAECCIAANKGTSEQETKGLPSKKGIVQSIVGQGYHRKIVLASQSVQN 445
Query: 531 GHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESES 590
+ E S P SM A CL NAL L LP + + E+
Sbjct: 446 LLYNDGE-------SSAIPVASMEFAAICLRNALLL------------LPEDQFDAKQEN 486
Query: 591 SEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYED----- 645
SS+ T N D+ GG S EV N S+ D
Sbjct: 487 GSKTSSQ---------------------TGNTDS----GGESSEVCSNK-SHEGDKFIPA 520
Query: 646 -----VCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYA 700
+ R+E + ++ ++LA AYV L + + + AL A LL+ P S FLGH+YA
Sbjct: 521 PPSSPLKRQEVENLRCSVLACSAYVGLALGDNLMALNHAEKLLQQPRLSGSLKFLGHLYA 580
Query: 701 AEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNP 760
AEAL L+R +A H + P + D V + E G +N
Sbjct: 581 AEALISLDRISDAITHLN-----------PENVTD-----VSLGVSSNEQEQGSDKGEN- 623
Query: 761 SPEDSRDTMFPK--PE---EARGTLYVNIAAMFAMQGEFERAHHFVTQALSIL-PRST-- 812
P +S P+ P AR + N+ + + ++ E+++A + QA S++ P+
Sbjct: 624 EPMESVGKQMPQCYPSSVTSARTMMLFNLGSAYCLRSEYDKARKCLHQAASMIHPKEIPP 683
Query: 813 EATLTAIYVDLMLGKSQEALAKLK 836
EA L A+Y++L G +Q AL +K
Sbjct: 684 EAILLAVYLELQNGNTQLALQIIK 707
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 91/201 (45%), Gaps = 36/201 (17%)
Query: 21 SGVLSVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDP 80
SG+ L++ A F + ++ CL L +L + DD K++ N A+AE+++ T
Sbjct: 21 SGISDHEKELSRSALQAFTAGNYEACLQHLGELKEINKDDYKVILNSAVAEFYKSDQTTT 80
Query: 81 KKLLEALNNVKNKSEELARATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYM 140
L + LN ++N+ V + + +S +
Sbjct: 81 DLLKQTLNQLRNE-------------------------------VHSAIDEIDS-----L 104
Query: 141 DEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHD 200
D+ + S+ N AVI ++L ++ +A+S+ E LYQ IEP E A +C LL+D+ L
Sbjct: 105 DDVENSMLYYNQAVILYYLRQHMEAISIGEKLYQFIEPFKEKFAHAVCFLLVDLYLLTFQ 164
Query: 201 AFRSADVLIYLEKAFSVGCVN 221
++ +L+ LEK G N
Sbjct: 165 TEKALHLLVVLEKMILQGHSN 185
>sp|Q9V3G6|CNOTA_DROME CCR4-NOT transcription complex subunit 10 homolog OS=Drosophila
melanogaster GN=CG18616 PE=1 SV=1
Length = 635
Score = 90.1 bits (222), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 97/391 (24%), Positives = 161/391 (41%), Gaps = 76/391 (19%)
Query: 362 LKSQLEYARRNHRKAIKLLLALSNR-TEMG-----ISSMFNNNLGCIYYQLAKYHTSSVF 415
LK+Q Y ++ + A K L+ ++N T+ G +S+ NN+G I+ ++ Y ++ F
Sbjct: 253 LKAQQYYIMKDFQMAAKQLMRINNECTQAGTITPQLSTCIANNMGVIHLRVRHYAIAAKF 312
Query: 416 LSKALSNSASLRKD-KPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFY 474
AL+ L ++ + L T S +S I YN G+ L +P A +CF F+
Sbjct: 313 FQNALNFDQQLARNLRQSTLQTMSSARSCEILYNLGVAMLHLRRPKEAFQCFLVPVKQFH 372
Query: 475 KQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVD 534
P LWLR+AE C+M E LV R +
Sbjct: 373 SNPRLWLRMAEACIMEHEAKLVEEER-----------------------------QSQSE 403
Query: 535 SPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGA 594
+P + S G P+ ++ A CL +AL L + ++F + + S SE E
Sbjct: 404 TPSTKPYAPQSAGVPEPTLEFAVLCLRSALTLTQH---YKTRFHMAAVS----SEDVEAP 456
Query: 595 SSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMI 654
K+ +S + + + SLE ++N ++
Sbjct: 457 EPKDPTQESWRH------------PQDNNFCNPSKPVSLESLENMMA------------- 491
Query: 655 KQALLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAA 714
A+ A ++V L + + V AL + LL S + LGH+YA EAL L+++ EA
Sbjct: 492 --AIYAAHSFVSLRLGDHVTALEMSEKLLACERLSDAHKLLGHMYAGEALMLMDKASEAR 549
Query: 715 EHFSMYLSGGDN-FDLPFSGEDCEQWRVEKI 744
+H G N FD F D W+++ +
Sbjct: 550 DHLDPTFVGTLNAFD--FETRD---WQLKSV 575
Score = 60.1 bits (144), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 83/185 (44%), Gaps = 43/185 (23%)
Query: 1 MDSRDSTQSTAAGNTSGEDDSGVLSVTATLAKEAALYFQSRKFDECLDLLKQLLDK-KPD 59
MDS +S T AG ED++ +L +A F + +FD CL+LL++L + +
Sbjct: 1 MDSAESPTKTQAG----EDEN------YSLLCQAHEQFNNSEFDRCLELLQELETRGESS 50
Query: 60 DPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGNIGSKVGLGS 119
P + HN A+ Y++ GCT LL+ L A + G++ S + L
Sbjct: 51 GPVLRHNRAVVSYYKTGCTQHSVLLKEL-----------EALTADADAPGDVSSGLSL-- 97
Query: 120 KGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPI 179
Q +AA +VA+ N AVI++H H + AL L PL +E +
Sbjct: 98 -------KQGAAA------------ATVARYNRAVIYYHRHMFGTALEKLAPLVARLEAL 138
Query: 180 DETTA 184
++ A
Sbjct: 139 EKAMA 143
>sp|O19112|CILP1_PIG Cartilage intermediate layer protein 1 (Fragment) OS=Sus scrofa
GN=CILP PE=1 SV=1
Length = 599
Score = 37.4 bits (85), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 8/113 (7%)
Query: 630 GTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLELPDCS 689
G LE +++S + + + Q L L Y + E+P A + + P +
Sbjct: 246 GEELEAVESSPKFNPNAI-----GVPQPYLNKLKYRRTDHEDPRVKKTAFQISMAKPRPN 300
Query: 690 RIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFD---LPFSGEDCEQW 739
G IYA E L +A HF Y GD +D +PF+ +D W
Sbjct: 301 SAEESNGPIYAFENLQACEEAPPSAAHFRFYQIEGDRYDYNTVPFNEDDPMSW 353
>sp|Q66K08|CILP1_MOUSE Cartilage intermediate layer protein 1 OS=Mus musculus GN=Cilp PE=2
SV=1
Length = 1184
Score = 35.4 bits (80), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 8/113 (7%)
Query: 630 GTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLELPDCS 689
G LE +++S + + + Q L L Y + E+P A + + P +
Sbjct: 830 GEELEAVESSPKFNPNAI-----GVPQPYLNKLKYRRTDHEDPRVKKTAFQISMAKPRPN 884
Query: 690 RIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFD---LPFSGEDCEQW 739
G IYA E L +A HF Y GD +D +PF+ +D W
Sbjct: 885 SAEESNGPIYAFENLRACEEAPPSAAHFRFYQIEGDRYDYNTVPFNEDDPMSW 937
>sp|O75339|CILP1_HUMAN Cartilage intermediate layer protein 1 OS=Homo sapiens GN=CILP PE=1
SV=4
Length = 1184
Score = 34.7 bits (78), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 654 IKQALLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEA 713
+ Q L L Y + E+P A + + P + G IYA E L +
Sbjct: 849 VPQPYLNKLNYRRTDHEDPRVKKTAFQISMAKPRPNSAEESNGPIYAFENLRACEEAPPS 908
Query: 714 AEHFSMYLSGGDNFD---LPFSGEDCEQW 739
A HF Y GD +D +PF+ +D W
Sbjct: 909 AAHFRFYQIEGDRYDYNTVPFNEDDPMSW 937
>sp|Q68FQ7|RPAP3_RAT RNA polymerase II-associated protein 3 OS=Rattus norvegicus
GN=Rpap3 PE=2 SV=1
Length = 659
Score = 33.9 bits (76), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 1 MDSRDSTQ-STAAGNTSGEDDSGVLSVTATLAKEAA-LYFQSRKFDECLDLLKQLLDKKP 58
+D DST S + + S ED V S A + KE YF+ K+DE ++ + +D P
Sbjct: 105 LDKEDSTHDSVSQESESDEDGVRVDSQKALVLKEKGNKYFKQGKYDEAIECYTKGMDADP 164
Query: 59 DDPKILHNIAIAEYFR 74
+P + N A A YFR
Sbjct: 165 YNPVLPTNRASA-YFR 179
>sp|Q39978|VTSS1_HYOMU Vetispiradiene synthase 1 (Fragment) OS=Hyoscyamus muticus PE=1
SV=1
Length = 520
Score = 33.9 bits (76), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 54/262 (20%), Positives = 107/262 (40%), Gaps = 50/262 (19%)
Query: 168 VLEPLYQNIEPIDETTALQIC----------LLLLDV----ALACHDAFRSADVLIYLEK 213
V E Q IE + E T+ + L L+D+ +A H + D+L ++ +
Sbjct: 5 VAEKYAQEIETLKEQTSTMLSAACGTTLTEKLNLIDIIERLGIAYHFEKQIEDMLDHIYR 64
Query: 214 A---FSVGCVNQVDSGSMGQQ---------STNLLAKYSSVPSNSSTADASNSDLAATVN 261
A F N +++ S+ + S N+ +++ +N ++ SD+ +N
Sbjct: 65 ADPYFEAHEYNDLNTSSVQFRLLRQHGYNVSPNIFSRFQD--ANGKFKESLRSDIRGLLN 122
Query: 262 ASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKL 321
E + RT E+ LE+ V ++ LE + +L P+ + +SI V+++
Sbjct: 123 LYEASHVRTHKEDILEEALVFSVGHLESAAPHLKSPLSKQVTHALEQSLHKSIPRVEIRY 182
Query: 322 KLQLYK---------VRFLLLTRNL-----KHAKREVK-------LAMNIARGKDSSLAL 360
+ +Y+ +RF L NL KH EV + +D ++
Sbjct: 183 FISIYEEEEFKNDLLLRFAKLDYNLLQMLHKHELSEVSRWWKDLDFVTTLPYARDRAVEC 242
Query: 361 FLKSQLEYARRNHRKAIKLLLA 382
+ + YA + +A +++LA
Sbjct: 243 YFWTMGVYAEPQYSQA-RVMLA 263
>sp|Q01002|PPR_SHV21 Protease precursor OS=Saimiriine herpesvirus 2 (strain 11) GN=17
PE=3 SV=1
Length = 475
Score = 33.9 bits (76), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 136 SLVYMDEFDVSVAKLNI-AVIWFHLHEYAKALSVLEPLYQNIEPIDETT-ALQICLLLLD 193
S+VY+ F VA + V++ +L + +K L + +P+ NIE + E+T I L +
Sbjct: 2 SIVYVAGFVDVVAYPKVDPVLYLNLDDVSKCLPLTKPIPLNIEHLPESTIGHTIGLYAVT 61
Query: 194 VALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQ 231
+ C S L E FS CV Q S + Q
Sbjct: 62 HGVFCVGVIHSEKFLHLTENLFSNSCVAQATSKFLPYQ 99
>sp|A5CD15|SECA_ORITB Protein translocase subunit SecA OS=Orientia tsutsugamushi (strain
Boryong) GN=secA PE=3 SV=1
Length = 880
Score = 33.5 bits (75), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 275 TLEDDTVLALSSLEISGQNLTRPVGLSSNE-LSRTLVDRSISTVDLKLKLQLYKVR-FLL 332
+LEDD + +S ++ N+ R +GL E + L++RS++T K++ Q Y++R LL
Sbjct: 581 SLEDDLMRIFASDRVT--NILRTIGLKDGEAIHHPLINRSLATAQQKIEAQNYEIRKNLL 638
Query: 333 LTRNLKHAKREV 344
N+ + +R+V
Sbjct: 639 KYDNVMNDQRKV 650
>sp|Q9D706|RPAP3_MOUSE RNA polymerase II-associated protein 3 OS=Mus musculus GN=Rpap3
PE=1 SV=1
Length = 660
Score = 33.1 bits (74), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 1 MDSRDSTQ-STAAGNTSGEDDSGVLSVTATLAKEAA-LYFQSRKFDECLDLLKQLLDKKP 58
+D DST S + + S ED V S A + KE YF+ K+DE ++ + +D P
Sbjct: 106 LDKEDSTHDSLSQESESDEDGIRVDSQKALVLKEKGNKYFKQGKYDEAIECYTKGMDADP 165
Query: 59 DDPKILHNIAIAEYFR 74
+P + N A A YFR
Sbjct: 166 YNPVLPTNRASA-YFR 180
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 292,846,385
Number of Sequences: 539616
Number of extensions: 12098566
Number of successful extensions: 37961
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 37848
Number of HSP's gapped (non-prelim): 100
length of query: 854
length of database: 191,569,459
effective HSP length: 126
effective length of query: 728
effective length of database: 123,577,843
effective search space: 89964669704
effective search space used: 89964669704
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)