Query 003047
Match_columns 854
No_of_seqs 296 out of 876
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 15:58:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003047.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003047hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2471 TPR repeat-containing 100.0 2.1E-75 4.6E-80 630.4 45.2 668 27-853 17-696 (696)
2 KOG4626 O-linked N-acetylgluco 100.0 1.3E-35 2.7E-40 328.9 33.4 447 30-822 51-500 (966)
3 KOG4626 O-linked N-acetylgluco 100.0 1.6E-34 3.4E-39 320.3 32.4 428 34-807 89-519 (966)
4 PRK11447 cellulose synthase su 100.0 2E-27 4.4E-32 303.1 58.0 365 26-488 27-430 (1157)
5 TIGR02917 PEP_TPR_lipo putativ 100.0 2.7E-27 5.8E-32 290.2 56.0 336 325-846 265-602 (899)
6 TIGR02917 PEP_TPR_lipo putativ 100.0 4.2E-27 9.1E-32 288.5 56.1 462 30-837 434-896 (899)
7 TIGR00990 3a0801s09 mitochondr 100.0 1.8E-27 4E-32 285.3 48.0 436 25-837 125-567 (615)
8 PRK11447 cellulose synthase su 100.0 2.5E-25 5.5E-30 283.8 57.6 563 29-838 114-737 (1157)
9 PRK09782 bacteriophage N4 rece 100.0 3.6E-24 7.8E-29 264.5 51.9 260 442-837 476-736 (987)
10 TIGR00990 3a0801s09 mitochondr 99.9 2.1E-22 4.7E-27 241.6 47.0 266 334-812 307-576 (615)
11 KOG2002 TPR-containing nuclear 99.9 9.6E-22 2.1E-26 229.7 42.9 569 28-822 165-760 (1018)
12 PRK09782 bacteriophage N4 rece 99.9 6.1E-21 1.3E-25 236.0 47.6 116 658-829 645-761 (987)
13 PRK15174 Vi polysaccharide exp 99.9 5.2E-21 1.1E-25 230.6 44.4 281 29-488 44-329 (656)
14 PRK15174 Vi polysaccharide exp 99.9 4.3E-21 9.3E-26 231.3 42.6 341 149-812 45-386 (656)
15 PRK10049 pgaA outer membrane p 99.9 3.2E-20 6.8E-25 227.8 43.0 395 143-851 46-467 (765)
16 PRK10049 pgaA outer membrane p 99.9 3.4E-18 7.4E-23 209.9 47.0 420 36-818 24-467 (765)
17 PRK11788 tetratricopeptide rep 99.8 1.4E-18 3E-23 196.1 32.0 294 24-486 32-325 (389)
18 PRK11788 tetratricopeptide rep 99.8 3E-18 6.4E-23 193.4 34.7 306 321-846 35-354 (389)
19 PRK14574 hmsH outer membrane p 99.8 2.4E-16 5.3E-21 192.0 46.3 465 26-850 33-523 (822)
20 KOG0547 Translocase of outer m 99.8 9.2E-17 2E-21 176.6 37.0 438 22-721 110-564 (606)
21 KOG2002 TPR-containing nuclear 99.8 2.3E-16 5E-21 185.1 39.8 511 34-721 206-743 (1018)
22 KOG0547 Translocase of outer m 99.8 2.8E-16 6.1E-21 172.9 37.2 397 144-837 113-562 (606)
23 KOG1126 DNA-binding cell divis 99.8 5.1E-17 1.1E-21 185.1 28.6 301 144-721 315-618 (638)
24 KOG2003 TPR repeat-containing 99.8 5.9E-16 1.3E-20 167.9 32.5 492 23-846 145-695 (840)
25 KOG2003 TPR repeat-containing 99.8 3.5E-16 7.7E-21 169.6 30.5 486 27-821 201-703 (840)
26 KOG1155 Anaphase-promoting com 99.8 9.6E-15 2.1E-19 160.2 40.5 273 325-809 231-538 (559)
27 KOG1126 DNA-binding cell divis 99.7 1.1E-16 2.5E-21 182.3 23.8 134 331-486 329-464 (638)
28 KOG1155 Anaphase-promoting com 99.7 2.2E-14 4.8E-19 157.4 38.1 367 29-722 166-535 (559)
29 KOG1173 Anaphase-promoting com 99.7 4.2E-14 9.1E-19 158.6 38.6 99 661-814 419-525 (611)
30 PRK14574 hmsH outer membrane p 99.7 4E-13 8.7E-18 164.0 46.5 443 142-839 30-477 (822)
31 PRK11189 lipoprotein NlpI; Pro 99.7 5.4E-15 1.2E-19 161.9 26.1 102 371-488 40-143 (296)
32 KOG2076 RNA polymerase III tra 99.7 2.9E-13 6.4E-18 158.6 39.8 362 18-470 130-510 (895)
33 KOG1173 Anaphase-promoting com 99.7 2.1E-14 4.6E-19 161.0 29.0 292 18-486 235-532 (611)
34 PRK12370 invasion protein regu 99.7 5.2E-14 1.1E-18 167.1 31.6 110 361-488 262-383 (553)
35 PLN03081 pentatricopeptide (PP 99.7 1E-12 2.2E-17 160.4 43.7 452 34-837 94-553 (697)
36 KOG2076 RNA polymerase III tra 99.7 1.6E-13 3.4E-18 160.9 33.8 351 328-837 146-508 (895)
37 PRK12370 invasion protein regu 99.6 1.6E-13 3.5E-18 163.0 31.7 272 26-472 257-535 (553)
38 PF13429 TPR_15: Tetratricopep 99.6 2E-15 4.3E-20 163.7 13.2 263 32-472 13-277 (280)
39 PLN03077 Protein ECB2; Provisi 99.6 1.3E-11 2.8E-16 154.1 48.0 305 330-845 398-726 (857)
40 KOG1130 Predicted G-alpha GTPa 99.6 1.1E-14 2.5E-19 157.0 16.9 334 27-488 17-366 (639)
41 PF13429 TPR_15: Tetratricopep 99.6 2.2E-15 4.7E-20 163.3 11.2 258 328-807 15-277 (280)
42 KOG1129 TPR repeat-containing 99.6 2.5E-14 5.4E-19 150.9 18.3 227 327-721 229-456 (478)
43 COG3063 PilF Tfp pilus assembl 99.6 4.1E-14 8.8E-19 144.1 17.3 149 323-489 37-185 (250)
44 PLN03218 maturation of RBCL 1; 99.6 2.4E-10 5.2E-15 143.4 54.2 344 146-811 437-789 (1060)
45 TIGR02521 type_IV_pilW type IV 99.6 6.8E-13 1.5E-17 136.0 26.3 148 323-488 33-180 (234)
46 PRK11189 lipoprotein NlpI; Pro 99.6 3.6E-13 7.8E-18 147.6 25.4 125 336-478 41-167 (296)
47 TIGR02521 type_IV_pilW type IV 99.6 8.8E-13 1.9E-17 135.2 26.6 206 144-474 29-234 (234)
48 TIGR00540 hemY_coli hemY prote 99.6 3.6E-12 7.8E-17 146.0 34.0 309 25-472 82-399 (409)
49 TIGR00540 hemY_coli hemY prote 99.6 9.8E-12 2.1E-16 142.4 36.2 306 323-837 86-395 (409)
50 KOG1840 Kinesin light chain [C 99.5 1E-12 2.2E-17 151.4 26.7 266 354-807 196-479 (508)
51 PRK10747 putative protoheme IX 99.5 1E-11 2.2E-16 141.8 34.5 123 658-838 265-387 (398)
52 KOG0548 Molecular co-chaperone 99.5 6.2E-12 1.4E-16 141.0 31.5 352 27-489 70-472 (539)
53 PRK10747 putative protoheme IX 99.5 1.6E-11 3.5E-16 140.1 34.2 308 24-473 81-391 (398)
54 KOG1125 TPR repeat-containing 99.5 3.2E-13 6.9E-18 152.3 19.6 256 30-490 288-555 (579)
55 PLN03218 maturation of RBCL 1; 99.5 1E-09 2.2E-14 137.8 53.0 294 329-837 480-779 (1060)
56 KOG1840 Kinesin light chain [C 99.5 1.9E-12 4.2E-17 149.2 26.0 259 30-471 202-478 (508)
57 PLN02789 farnesyltranstransfer 99.5 5.6E-12 1.2E-16 139.2 27.7 152 316-488 33-187 (320)
58 PLN03077 Protein ECB2; Provisi 99.5 2.9E-10 6.2E-15 142.2 46.6 138 658-848 556-694 (857)
59 PRK15359 type III secretion sy 99.5 3E-13 6.4E-18 132.5 15.5 126 342-490 14-139 (144)
60 KOG0548 Molecular co-chaperone 99.5 8E-12 1.7E-16 140.2 26.8 386 361-847 6-428 (539)
61 KOG4162 Predicted calmodulin-b 99.5 1.1E-09 2.5E-14 127.1 43.3 429 145-845 356-788 (799)
62 KOG1129 TPR repeat-containing 99.5 1.7E-12 3.7E-17 137.2 18.4 217 147-488 223-440 (478)
63 KOG1125 TPR repeat-containing 99.4 3.3E-12 7.2E-17 144.2 19.9 158 327-488 291-475 (579)
64 KOG0624 dsRNA-activated protei 99.4 6.2E-11 1.4E-15 126.2 26.7 311 25-486 36-384 (504)
65 KOG0550 Molecular chaperone (D 99.4 1.5E-11 3.2E-16 134.0 22.5 154 321-489 169-333 (486)
66 KOG1174 Anaphase-promoting com 99.4 6.5E-09 1.4E-13 113.4 42.3 301 328-817 205-510 (564)
67 PLN03081 pentatricopeptide (PP 99.4 1E-09 2.2E-14 134.3 40.7 133 659-846 394-529 (697)
68 KOG0624 dsRNA-activated protei 99.4 4.9E-10 1.1E-14 119.5 31.4 277 327-812 78-375 (504)
69 KOG4162 Predicted calmodulin-b 99.4 2.6E-10 5.5E-15 132.4 30.8 326 42-479 459-790 (799)
70 cd05804 StaR_like StaR_like; a 99.4 6.3E-10 1.4E-14 124.2 33.4 309 323-837 8-332 (355)
71 COG2956 Predicted N-acetylgluc 99.4 3.7E-10 8E-15 120.0 28.8 290 29-488 37-326 (389)
72 KOG1127 TPR repeat-containing 99.4 4.2E-10 9.2E-15 132.9 32.0 319 30-492 565-899 (1238)
73 cd05804 StaR_like StaR_like; a 99.3 6E-09 1.3E-13 116.3 34.2 217 142-475 2-218 (355)
74 KOG1127 TPR repeat-containing 99.3 2.1E-09 4.7E-14 127.1 30.5 330 327-837 568-909 (1238)
75 TIGR02552 LcrH_SycD type III s 99.3 7.3E-11 1.6E-15 113.1 14.9 122 342-483 4-125 (135)
76 KOG0495 HAT repeat protein [RN 99.3 4.6E-07 9.9E-12 103.9 46.9 296 323-843 586-883 (913)
77 TIGR03302 OM_YfiO outer membra 99.3 3.7E-10 8.1E-15 118.9 21.1 207 142-475 29-235 (235)
78 PRK10370 formate-dependent nit 99.3 1E-10 2.2E-15 120.7 16.3 126 334-479 52-180 (198)
79 COG3063 PilF Tfp pilus assembl 99.3 9.3E-10 2E-14 112.7 22.5 113 358-488 36-150 (250)
80 KOG1174 Anaphase-promoting com 99.3 1.4E-08 3.1E-13 110.8 32.5 401 25-722 95-499 (564)
81 PLN02789 farnesyltranstransfer 99.3 2.6E-09 5.6E-14 118.1 27.3 205 334-721 33-248 (320)
82 KOG1130 Predicted G-alpha GTPa 99.2 6.6E-11 1.4E-15 128.3 13.8 285 145-492 16-330 (639)
83 KOG0495 HAT repeat protein [RN 99.2 1.6E-06 3.4E-11 99.6 49.0 231 323-722 481-713 (913)
84 KOG1156 N-terminal acetyltrans 99.2 1.6E-07 3.5E-12 107.8 40.9 254 24-404 4-264 (700)
85 TIGR03302 OM_YfiO outer membra 99.2 4.5E-10 9.7E-15 118.3 18.5 164 323-489 35-215 (235)
86 KOG2376 Signal recognition par 99.2 1.3E-06 2.8E-11 99.7 46.0 247 21-399 6-268 (652)
87 PRK04841 transcriptional regul 99.2 6.1E-07 1.3E-11 112.9 45.6 313 326-837 414-756 (903)
88 PRK15359 type III secretion sy 99.2 6.1E-10 1.3E-14 109.1 14.7 111 326-456 29-139 (144)
89 PRK15363 pathogenicity island 99.1 1.3E-09 2.9E-14 106.8 14.6 107 354-478 32-138 (157)
90 KOG0553 TPR repeat-containing 99.1 7.4E-10 1.6E-14 117.4 13.3 111 360-488 84-194 (304)
91 PRK15179 Vi polysaccharide bio 99.1 2.8E-09 6E-14 128.5 18.9 140 329-488 57-199 (694)
92 KOG3060 Uncharacterized conser 99.1 6.9E-09 1.5E-13 107.5 19.0 141 328-488 59-199 (289)
93 KOG0550 Molecular chaperone (D 99.1 3.3E-09 7.1E-14 116.0 16.5 291 330-810 58-353 (486)
94 KOG1156 N-terminal acetyltrans 99.1 6.3E-08 1.4E-12 111.1 27.1 243 358-813 8-254 (700)
95 PRK10370 formate-dependent nit 99.0 6.2E-09 1.3E-13 107.6 17.1 130 328-488 23-155 (198)
96 PRK15179 Vi polysaccharide bio 99.0 6E-09 1.3E-13 125.7 19.4 142 323-484 88-229 (694)
97 KOG2376 Signal recognition par 99.0 1.7E-06 3.7E-11 98.7 36.9 149 325-480 83-261 (652)
98 COG2956 Predicted N-acetylgluc 99.0 4.3E-07 9.2E-12 97.1 29.9 298 324-837 38-343 (389)
99 PRK04841 transcriptional regul 99.0 2.1E-06 4.6E-11 108.0 42.0 296 323-811 454-764 (903)
100 PLN03088 SGT1, suppressor of 99.0 3.8E-09 8.1E-14 118.9 15.4 113 360-490 5-117 (356)
101 PF04733 Coatomer_E: Coatomer 98.9 1.5E-08 3.4E-13 110.6 15.5 134 326-479 136-272 (290)
102 PRK14720 transcript cleavage f 98.9 7.9E-08 1.7E-12 117.2 22.5 223 142-493 27-273 (906)
103 TIGR02795 tol_pal_ybgF tol-pal 98.9 3.5E-08 7.6E-13 91.5 13.8 110 357-480 2-113 (119)
104 COG5010 TadD Flp pilus assembl 98.8 3.4E-07 7.4E-12 95.8 20.3 131 337-488 49-179 (257)
105 PF13414 TPR_11: TPR repeat; P 98.8 1.6E-08 3.4E-13 85.7 8.6 67 392-474 2-69 (69)
106 PRK02603 photosystem I assembl 98.8 6.9E-08 1.5E-12 97.3 14.2 106 354-476 32-153 (172)
107 KOG3060 Uncharacterized conser 98.8 1.4E-06 3E-11 90.7 23.7 147 326-492 91-240 (289)
108 KOG3785 Uncharacterized conser 98.8 1.4E-06 3E-11 93.9 23.5 347 31-489 61-440 (557)
109 cd00189 TPR Tetratricopeptide 98.8 7.1E-08 1.5E-12 82.8 11.4 99 359-475 2-100 (100)
110 KOG1128 Uncharacterized conser 98.8 2.8E-07 6E-12 107.2 18.6 135 327-488 430-564 (777)
111 TIGR02552 LcrH_SycD type III s 98.8 1.3E-07 2.7E-12 90.6 13.6 97 323-423 19-115 (135)
112 KOG3785 Uncharacterized conser 98.7 9.7E-07 2.1E-11 95.0 21.0 359 323-839 59-455 (557)
113 KOG0553 TPR repeat-containing 98.7 6.6E-08 1.4E-12 102.8 12.2 124 328-471 88-214 (304)
114 PF09976 TPR_21: Tetratricopep 98.7 1.9E-07 4.1E-12 91.4 14.6 120 331-470 21-145 (145)
115 CHL00033 ycf3 photosystem I as 98.7 1.3E-07 2.8E-12 94.8 13.2 123 338-477 16-154 (168)
116 COG5010 TadD Flp pilus assembl 98.7 3.7E-07 8E-12 95.6 16.8 145 325-489 70-214 (257)
117 PF14938 SNAP: Soluble NSF att 98.7 4.6E-07 1E-11 98.8 18.4 214 142-497 30-251 (282)
118 COG4783 Putative Zn-dependent 98.7 3.9E-07 8.4E-12 102.3 17.0 121 354-492 303-423 (484)
119 KOG1128 Uncharacterized conser 98.7 6.2E-07 1.3E-11 104.4 18.5 146 323-488 487-634 (777)
120 PLN03088 SGT1, suppressor of 98.7 2.7E-07 5.7E-12 104.0 15.2 110 327-456 8-117 (356)
121 PRK15363 pathogenicity island 98.7 2.1E-07 4.6E-12 91.4 12.2 92 328-423 42-133 (157)
122 PF12569 NARP1: NMDA receptor- 98.7 4.2E-05 9.2E-10 89.7 32.8 96 322-421 5-105 (517)
123 PF13414 TPR_11: TPR repeat; P 98.6 9.3E-08 2E-12 80.9 8.0 67 355-423 1-68 (69)
124 PF12895 Apc3: Anaphase-promot 98.6 8.8E-08 1.9E-12 84.7 7.4 82 370-469 2-84 (84)
125 COG3071 HemY Uncharacterized e 98.6 7.9E-05 1.7E-09 82.2 31.5 303 26-473 83-391 (400)
126 PF12569 NARP1: NMDA receptor- 98.6 3.9E-05 8.4E-10 90.1 31.1 321 27-476 4-338 (517)
127 PRK10153 DNA-binding transcrip 98.6 1.5E-06 3.2E-11 102.3 17.8 134 325-478 343-488 (517)
128 PF13432 TPR_16: Tetratricopep 98.6 2.2E-07 4.8E-12 77.7 7.9 64 398-477 2-65 (65)
129 PRK15331 chaperone protein Sic 98.6 5.3E-07 1.1E-11 89.0 11.7 128 344-493 26-153 (165)
130 cd00189 TPR Tetratricopeptide 98.6 9E-07 2E-11 75.8 11.9 94 325-422 4-97 (100)
131 TIGR02795 tol_pal_ybgF tol-pal 98.5 1.3E-06 2.9E-11 80.8 13.4 97 323-422 4-105 (119)
132 COG4783 Putative Zn-dependent 98.5 3.5E-06 7.5E-11 94.9 18.2 158 321-482 306-464 (484)
133 PRK10803 tol-pal system protei 98.5 1.8E-06 3.8E-11 93.1 14.9 108 358-479 143-253 (263)
134 PF12895 Apc3: Anaphase-promot 98.5 4.3E-07 9.3E-12 80.3 8.1 81 334-419 2-84 (84)
135 PRK14720 transcript cleavage f 98.5 7.1E-06 1.5E-10 100.4 21.3 132 354-489 28-162 (906)
136 PF14938 SNAP: Soluble NSF att 98.5 7.3E-06 1.6E-10 89.4 19.4 104 360-474 158-268 (282)
137 KOG0543 FKBP-type peptidyl-pro 98.5 9.3E-07 2E-11 97.7 12.3 111 362-488 213-336 (397)
138 PF04733 Coatomer_E: Coatomer 98.5 2.1E-06 4.6E-11 93.9 14.4 145 323-492 104-250 (290)
139 PF13424 TPR_12: Tetratricopep 98.5 4.5E-07 9.6E-12 78.7 7.1 73 392-473 4-76 (78)
140 COG3071 HemY Uncharacterized e 98.4 0.0012 2.5E-08 73.2 34.7 295 361-839 88-388 (400)
141 PF13525 YfiO: Outer membrane 98.4 1.2E-05 2.5E-10 83.5 17.4 167 323-492 7-193 (203)
142 CHL00033 ycf3 photosystem I as 98.4 6.1E-06 1.3E-10 82.7 14.8 101 320-424 34-144 (168)
143 KOG3081 Vesicle coat complex C 98.4 0.00027 5.8E-09 74.5 26.7 136 327-484 143-284 (299)
144 PF13525 YfiO: Outer membrane 98.4 7.8E-05 1.7E-09 77.4 23.0 193 391-715 3-199 (203)
145 PF09976 TPR_21: Tetratricopep 98.4 1.8E-05 4E-10 77.4 17.0 128 661-837 16-143 (145)
146 PRK02603 photosystem I assembl 98.3 1.4E-05 2.9E-10 80.6 15.8 97 322-422 36-142 (172)
147 PRK10866 outer membrane biogen 98.3 0.0001 2.2E-09 78.7 22.9 65 25-95 30-97 (243)
148 PF13424 TPR_12: Tetratricopep 98.3 6.1E-07 1.3E-11 77.8 4.6 71 353-423 1-76 (78)
149 COG4235 Cytochrome c biogenesi 98.3 2E-05 4.4E-10 84.6 16.8 134 336-490 137-273 (287)
150 PF13432 TPR_16: Tetratricopep 98.3 2.6E-06 5.6E-11 71.2 7.9 60 361-422 1-60 (65)
151 PRK10866 outer membrane biogen 98.3 4.2E-05 9.1E-10 81.7 18.4 163 324-489 35-224 (243)
152 PF12688 TPR_5: Tetratrico pep 98.2 2.1E-05 4.4E-10 74.7 12.3 101 358-471 2-103 (120)
153 PRK10153 DNA-binding transcrip 98.2 4.1E-05 9E-10 90.2 17.6 128 342-488 324-464 (517)
154 PRK10803 tol-pal system protei 98.2 1.9E-05 4E-10 85.2 13.6 89 332-423 154-247 (263)
155 PF14559 TPR_19: Tetratricopep 98.2 4.1E-06 8.9E-11 70.4 6.8 67 404-486 2-68 (68)
156 PF13512 TPR_18: Tetratricopep 98.1 6.7E-05 1.4E-09 72.8 13.8 109 357-479 10-135 (142)
157 KOG4648 Uncharacterized conser 98.1 1.1E-05 2.3E-10 86.9 9.0 108 361-486 101-208 (536)
158 PF13371 TPR_9: Tetratricopept 98.1 1.6E-05 3.5E-10 67.8 8.5 70 399-484 1-70 (73)
159 PLN03098 LPA1 LOW PSII ACCUMUL 98.1 1.2E-05 2.6E-10 90.9 9.7 67 354-422 72-141 (453)
160 KOG1941 Acetylcholine receptor 98.1 0.0013 2.9E-08 71.8 24.4 318 25-468 4-356 (518)
161 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 6.7E-05 1.5E-09 85.1 15.4 123 329-475 177-299 (395)
162 PF10300 DUF3808: Protein of u 98.1 0.0021 4.5E-08 75.2 28.3 122 334-472 246-376 (468)
163 PLN03098 LPA1 LOW PSII ACCUMUL 98.0 1.4E-05 3E-10 90.4 9.4 62 322-385 76-140 (453)
164 KOG4340 Uncharacterized conser 98.0 9.3E-05 2E-09 78.6 14.8 128 323-472 80-207 (459)
165 COG0457 NrfG FOG: TPR repeat [ 98.0 0.0028 6.2E-08 62.1 24.9 206 146-475 59-268 (291)
166 PRK11906 transcriptional regul 98.0 0.00013 2.7E-09 82.9 16.4 113 670-837 318-432 (458)
167 KOG2047 mRNA splicing factor [ 98.0 0.072 1.6E-06 62.4 43.6 314 323-843 389-725 (835)
168 COG1729 Uncharacterized protei 98.0 8.5E-05 1.8E-09 78.9 13.3 109 360-482 144-254 (262)
169 KOG4340 Uncharacterized conser 98.0 0.005 1.1E-07 65.9 26.0 141 331-488 154-321 (459)
170 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.0001 2.3E-09 83.6 14.5 105 366-491 178-282 (395)
171 PF14559 TPR_19: Tetratricopep 98.0 3.3E-05 7.2E-10 64.8 7.9 65 332-400 2-66 (68)
172 COG4235 Cytochrome c biogenesi 97.9 0.00016 3.4E-09 77.8 14.6 50 439-488 152-201 (287)
173 PRK11906 transcriptional regul 97.9 0.00017 3.7E-09 81.9 14.6 135 325-479 259-408 (458)
174 PRK15331 chaperone protein Sic 97.9 0.00017 3.6E-09 71.6 12.7 87 332-422 48-134 (165)
175 KOG4234 TPR repeat-containing 97.9 0.00016 3.4E-09 73.1 12.4 106 362-484 100-209 (271)
176 PF13428 TPR_14: Tetratricopep 97.9 2.3E-05 5E-10 60.6 5.2 43 444-486 2-44 (44)
177 KOG0543 FKBP-type peptidyl-pro 97.8 0.00026 5.6E-09 78.7 14.3 125 327-471 214-354 (397)
178 PF12688 TPR_5: Tetratrico pep 97.8 0.00026 5.6E-09 67.3 12.5 92 699-837 6-100 (120)
179 PF13371 TPR_9: Tetratricopept 97.8 0.00013 2.9E-09 62.1 8.6 64 329-396 3-66 (73)
180 KOG1941 Acetylcholine receptor 97.8 0.00089 1.9E-08 73.0 16.5 125 358-488 123-257 (518)
181 COG0457 NrfG FOG: TPR repeat [ 97.7 0.0035 7.7E-08 61.4 18.5 145 325-488 99-247 (291)
182 COG4105 ComL DNA uptake lipopr 97.6 0.0054 1.2E-07 65.0 20.1 181 145-422 33-232 (254)
183 PF06552 TOM20_plant: Plant sp 97.6 0.00032 7E-09 70.3 10.0 62 409-486 51-123 (186)
184 KOG2053 Mitochondrial inherita 97.6 0.11 2.3E-06 63.2 31.9 127 332-479 20-146 (932)
185 COG4700 Uncharacterized protei 97.6 0.0016 3.5E-08 65.4 14.3 124 659-836 92-217 (251)
186 PF00515 TPR_1: Tetratricopept 97.5 0.00012 2.7E-09 52.9 4.2 34 443-476 1-34 (34)
187 KOG3617 WD40 and TPR repeat-co 97.5 0.42 9E-06 57.6 41.6 45 151-208 805-849 (1416)
188 KOG3081 Vesicle coat complex C 97.5 0.0068 1.5E-07 64.2 17.9 142 324-492 111-256 (299)
189 KOG1915 Cell cycle control pro 97.5 0.24 5.2E-06 56.4 30.6 145 322-488 405-551 (677)
190 COG4785 NlpI Lipoprotein NlpI, 97.4 0.00066 1.4E-08 69.6 9.0 111 358-486 66-178 (297)
191 COG1729 Uncharacterized protei 97.4 0.0017 3.7E-08 69.2 12.4 97 318-423 144-245 (262)
192 PF07719 TPR_2: Tetratricopept 97.4 0.00035 7.5E-09 50.2 4.9 34 443-476 1-34 (34)
193 KOG4642 Chaperone-dependent E3 97.4 0.00037 8.1E-09 72.3 6.8 107 362-486 15-126 (284)
194 KOG1070 rRNA processing protei 97.3 0.024 5.2E-07 71.1 22.8 210 142-473 1454-1664(1710)
195 COG4105 ComL DNA uptake lipopr 97.3 0.039 8.5E-07 58.6 21.5 198 389-721 30-231 (254)
196 COG4785 NlpI Lipoprotein NlpI, 97.3 0.0022 4.8E-08 65.8 11.8 165 317-485 61-280 (297)
197 PF00515 TPR_1: Tetratricopept 97.3 0.00039 8.5E-09 50.2 4.3 34 778-811 1-34 (34)
198 COG2976 Uncharacterized protei 97.2 0.0089 1.9E-07 60.8 14.7 125 333-477 65-193 (207)
199 KOG1070 rRNA processing protei 97.2 0.11 2.3E-06 65.6 26.4 212 340-721 1443-1661(1710)
200 PF13428 TPR_14: Tetratricopep 97.2 0.00083 1.8E-08 51.9 5.4 41 779-819 2-42 (44)
201 KOG4234 TPR repeat-containing 97.2 0.00091 2E-08 67.8 7.0 101 703-850 104-204 (271)
202 KOG4555 TPR repeat-containing 97.1 0.011 2.4E-07 56.2 13.4 103 362-478 48-150 (175)
203 KOG4555 TPR repeat-containing 97.1 0.0047 1E-07 58.8 10.5 94 327-422 49-144 (175)
204 PF13512 TPR_18: Tetratricopep 97.1 0.0081 1.8E-07 58.5 12.5 97 324-423 13-129 (142)
205 PF07719 TPR_2: Tetratricopept 97.1 0.0012 2.5E-08 47.4 5.0 34 778-811 1-34 (34)
206 KOG3617 WD40 and TPR repeat-co 97.0 0.092 2E-06 62.8 22.3 104 366-469 1044-1171(1416)
207 KOG2300 Uncharacterized conser 97.0 0.99 2.1E-05 51.8 37.7 136 654-839 321-472 (629)
208 COG4700 Uncharacterized protei 97.0 0.036 7.8E-07 56.0 16.2 135 335-488 70-204 (251)
209 KOG2796 Uncharacterized conser 96.9 0.014 3E-07 61.7 13.3 135 325-477 181-320 (366)
210 PF06552 TOM20_plant: Plant sp 96.9 0.011 2.3E-07 59.6 11.3 82 337-422 7-109 (186)
211 PF13181 TPR_8: Tetratricopept 96.8 0.0023 5E-08 46.0 4.6 33 444-476 2-34 (34)
212 PF13431 TPR_17: Tetratricopep 96.7 0.0018 3.9E-08 47.3 3.5 32 344-377 2-33 (34)
213 KOG2471 TPR repeat-containing 96.7 0.36 7.8E-06 55.2 22.8 122 330-468 518-680 (696)
214 PF13431 TPR_17: Tetratricopep 96.6 0.0021 4.5E-08 47.0 3.3 34 800-833 1-34 (34)
215 KOG0376 Serine-threonine phosp 96.6 0.0025 5.4E-08 72.4 5.3 114 363-494 10-123 (476)
216 KOG0551 Hsp90 co-chaperone CNS 96.6 0.0062 1.4E-07 66.2 8.0 100 362-477 86-187 (390)
217 KOG2796 Uncharacterized conser 96.5 0.021 4.6E-07 60.3 10.9 138 658-844 179-319 (366)
218 KOG0551 Hsp90 co-chaperone CNS 96.4 0.012 2.6E-07 64.1 8.8 94 387-492 75-168 (390)
219 PF04184 ST7: ST7 protein; In 96.4 0.12 2.6E-06 59.4 17.0 136 333-486 180-339 (539)
220 PF08631 SPO22: Meiosis protei 96.4 1.3 2.8E-05 48.3 24.7 67 146-212 35-111 (278)
221 KOG4642 Chaperone-dependent E3 96.3 0.01 2.3E-07 61.9 7.5 94 327-424 16-109 (284)
222 KOG0545 Aryl-hydrocarbon recep 96.3 0.052 1.1E-06 56.9 12.5 112 357-484 178-305 (329)
223 PF04184 ST7: ST7 protein; In 96.3 0.1 2.2E-06 60.0 15.8 160 18-213 164-323 (539)
224 KOG2053 Mitochondrial inherita 96.3 0.48 1E-05 57.8 22.1 102 369-489 21-122 (932)
225 KOG1585 Protein required for f 96.3 0.24 5.2E-06 52.2 17.1 133 329-488 99-239 (308)
226 PF13176 TPR_7: Tetratricopept 96.3 0.0071 1.5E-07 44.6 4.4 28 395-422 1-28 (36)
227 KOG1915 Cell cycle control pro 96.2 3.2 7E-05 47.7 43.9 277 38-488 84-369 (677)
228 PF03704 BTAD: Bacterial trans 96.2 0.16 3.4E-06 49.4 14.9 118 692-838 4-122 (146)
229 PF13181 TPR_8: Tetratricopept 96.1 0.0084 1.8E-07 43.1 4.2 33 779-811 2-34 (34)
230 PF03704 BTAD: Bacterial trans 96.1 0.091 2E-06 51.0 12.9 98 325-424 10-127 (146)
231 KOG4648 Uncharacterized conser 96.1 0.013 2.8E-07 63.8 7.1 150 326-479 102-270 (536)
232 KOG1550 Extracellular protein 96.1 0.71 1.5E-05 55.4 22.6 272 42-488 227-517 (552)
233 KOG0545 Aryl-hydrocarbon recep 96.1 0.031 6.7E-07 58.6 9.4 95 394-488 179-275 (329)
234 PF10345 Cohesin_load: Cohesin 96.0 5.8 0.00013 48.2 32.4 123 359-488 303-457 (608)
235 KOG2047 mRNA splicing factor [ 95.9 5.7 0.00012 47.4 46.5 514 33-842 32-617 (835)
236 PF13174 TPR_6: Tetratricopept 95.9 0.011 2.4E-07 41.9 3.7 33 444-476 1-33 (33)
237 COG2976 Uncharacterized protei 95.8 0.18 4E-06 51.5 13.5 102 660-813 93-194 (207)
238 PF02259 FAT: FAT domain; Int 95.8 4.1 8.9E-05 45.1 25.8 139 354-493 143-308 (352)
239 PF10300 DUF3808: Protein of u 95.8 0.17 3.6E-06 59.4 15.1 141 333-488 200-350 (468)
240 PF05843 Suf: Suppressor of fo 95.7 0.16 3.5E-06 55.4 14.0 136 328-481 8-145 (280)
241 COG3118 Thioredoxin domain-con 95.5 0.45 9.7E-06 51.6 15.6 146 323-488 136-283 (304)
242 PF10345 Cohesin_load: Cohesin 95.4 9.2 0.0002 46.6 45.3 235 143-475 56-333 (608)
243 PF13281 DUF4071: Domain of un 95.3 3.3 7.2E-05 47.0 22.6 151 327-486 185-348 (374)
244 KOG4507 Uncharacterized conser 95.3 0.039 8.5E-07 63.8 7.3 108 364-488 614-721 (886)
245 PF14853 Fis1_TPR_C: Fis1 C-te 95.2 0.064 1.4E-06 43.4 6.4 43 780-822 3-45 (53)
246 PF13176 TPR_7: Tetratricopept 95.0 0.045 9.7E-07 40.3 4.5 30 445-474 1-30 (36)
247 smart00028 TPR Tetratricopepti 94.9 0.032 6.8E-07 37.7 3.4 33 444-476 2-34 (34)
248 smart00028 TPR Tetratricopepti 94.8 0.044 9.5E-07 36.9 3.9 33 779-811 2-34 (34)
249 KOG2300 Uncharacterized conser 94.8 11 0.00023 43.8 46.3 138 25-207 5-149 (629)
250 PRK10941 hypothetical protein; 94.5 0.2 4.4E-06 54.3 9.9 83 765-847 168-251 (269)
251 PF13174 TPR_6: Tetratricopept 94.4 0.07 1.5E-06 37.6 4.2 32 780-811 2-33 (33)
252 COG0790 FOG: TPR repeat, SEL1 94.1 1.5 3.2E-05 47.7 16.0 126 337-488 93-233 (292)
253 PF13374 TPR_10: Tetratricopep 94.1 0.098 2.1E-06 38.9 4.7 33 393-425 2-34 (42)
254 KOG1586 Protein required for f 94.1 2 4.4E-05 45.2 15.4 146 26-215 72-225 (288)
255 PF10602 RPN7: 26S proteasome 94.1 1.2 2.6E-05 45.3 13.9 71 142-217 32-102 (177)
256 KOG2610 Uncharacterized conser 94.0 0.65 1.4E-05 51.0 12.3 125 663-838 110-235 (491)
257 KOG1550 Extracellular protein 94.0 0.75 1.6E-05 55.2 14.3 130 335-488 263-407 (552)
258 KOG1586 Protein required for f 94.0 7.2 0.00016 41.3 19.2 143 23-215 29-181 (288)
259 COG4649 Uncharacterized protei 93.9 1.4 3.1E-05 44.4 13.3 115 657-821 95-209 (221)
260 COG3118 Thioredoxin domain-con 93.9 2.6 5.6E-05 46.0 16.4 163 149-420 137-299 (304)
261 PF14853 Fis1_TPR_C: Fis1 C-te 93.8 0.14 3E-06 41.5 5.1 40 444-483 2-41 (53)
262 PF02259 FAT: FAT domain; Int 93.6 1.3 2.8E-05 49.2 14.6 137 323-475 148-341 (352)
263 PF14561 TPR_20: Tetratricopep 93.6 0.65 1.4E-05 41.8 9.9 79 340-421 7-86 (90)
264 PF13374 TPR_10: Tetratricopep 93.3 0.16 3.4E-06 37.8 4.6 31 778-808 2-32 (42)
265 PF12968 DUF3856: Domain of Un 93.2 2.2 4.7E-05 40.4 12.6 102 364-472 16-129 (144)
266 KOG2610 Uncharacterized conser 93.2 0.92 2E-05 49.9 11.7 129 327-473 109-239 (491)
267 PF09986 DUF2225: Uncharacteri 92.9 0.78 1.7E-05 48.2 10.7 111 370-485 90-208 (214)
268 KOG0376 Serine-threonine phosp 92.7 0.14 3E-06 58.6 5.0 94 327-424 10-103 (476)
269 KOG1308 Hsp70-interacting prot 92.7 0.06 1.3E-06 59.1 2.0 99 366-482 123-222 (377)
270 KOG3616 Selective LIM binding 92.5 15 0.00033 44.3 20.9 110 330-471 800-910 (1636)
271 PF10602 RPN7: 26S proteasome 92.1 0.84 1.8E-05 46.4 9.4 108 358-475 37-145 (177)
272 COG0790 FOG: TPR repeat, SEL1 91.7 5.3 0.00011 43.4 15.8 129 334-488 54-198 (292)
273 COG3014 Uncharacterized protei 91.0 7.5 0.00016 43.1 15.4 114 322-479 126-249 (449)
274 PF13281 DUF4071: Domain of un 90.9 2.6 5.6E-05 47.8 12.4 114 331-462 151-278 (374)
275 COG5159 RPN6 26S proteasome re 90.9 4.8 0.0001 43.6 13.5 217 151-423 8-236 (421)
276 PF05843 Suf: Suppressor of fo 90.8 2.8 6.2E-05 45.7 12.5 112 359-488 3-118 (280)
277 COG2909 MalT ATP-dependent tra 90.6 55 0.0012 40.9 27.1 323 354-837 344-684 (894)
278 KOG3783 Uncharacterized conser 90.3 16 0.00036 42.9 18.2 80 388-476 444-524 (546)
279 KOG1585 Protein required for f 90.2 3.1 6.8E-05 44.1 11.3 109 360-479 34-146 (308)
280 KOG1308 Hsp70-interacting prot 89.9 0.3 6.5E-06 53.8 3.9 91 328-422 121-211 (377)
281 PRK10941 hypothetical protein; 89.8 1.9 4E-05 47.0 9.8 75 394-484 182-256 (269)
282 PF12862 Apc5: Anaphase-promot 89.5 2.3 5.1E-05 38.3 8.9 44 146-189 41-84 (94)
283 PF04781 DUF627: Protein of un 89.4 3.2 6.9E-05 38.9 9.6 92 327-422 2-107 (111)
284 PF07721 TPR_4: Tetratricopept 89.2 0.44 9.6E-06 32.4 2.9 25 779-803 2-26 (26)
285 PF09613 HrpB1_HrpK: Bacterial 89.2 1.1 2.4E-05 44.6 6.9 69 777-845 9-78 (160)
286 PF07079 DUF1347: Protein of u 89.1 9.4 0.0002 43.9 14.7 137 24-207 376-517 (549)
287 PF09613 HrpB1_HrpK: Bacterial 89.0 3.7 8.1E-05 41.0 10.4 77 329-409 18-94 (160)
288 KOG3824 Huntingtin interacting 88.9 1.1 2.5E-05 48.6 7.2 70 399-484 122-191 (472)
289 PF12862 Apc5: Anaphase-promot 88.6 1.8 3.8E-05 39.2 7.3 61 366-426 7-74 (94)
290 PF07079 DUF1347: Protein of u 87.9 59 0.0013 37.7 32.5 32 30-61 9-40 (549)
291 KOG3824 Huntingtin interacting 87.4 1.7 3.8E-05 47.2 7.4 52 369-422 128-179 (472)
292 PF12968 DUF3856: Domain of Un 87.3 4.7 0.0001 38.2 9.2 63 659-721 58-127 (144)
293 COG4649 Uncharacterized protei 86.3 21 0.00046 36.3 13.7 138 333-489 70-212 (221)
294 TIGR02561 HrpB1_HrpK type III 86.2 1.7 3.7E-05 42.7 6.1 61 777-837 9-69 (153)
295 KOG4507 Uncharacterized conser 86.2 2.1 4.5E-05 50.2 7.6 110 354-479 210-319 (886)
296 PF08631 SPO22: Meiosis protei 86.1 56 0.0012 35.6 24.3 116 19-182 27-157 (278)
297 PF04781 DUF627: Protein of un 86.0 11 0.00024 35.4 10.9 106 33-178 2-110 (111)
298 KOG1839 Uncharacterized protei 85.9 3.7 8.1E-05 52.5 10.3 162 299-473 955-1129(1236)
299 PF09986 DUF2225: Uncharacteri 85.5 3.9 8.5E-05 42.9 8.8 88 335-422 91-194 (214)
300 COG2909 MalT ATP-dependent tra 85.4 1.1E+02 0.0024 38.3 26.8 103 321-425 415-529 (894)
301 KOG1463 26S proteasome regulat 84.8 73 0.0016 35.7 21.3 282 27-404 4-329 (411)
302 COG3914 Spy Predicted O-linked 84.3 14 0.00031 43.8 13.3 143 330-486 40-185 (620)
303 PF04910 Tcf25: Transcriptiona 84.2 46 0.001 37.8 17.4 97 327-425 109-225 (360)
304 PF14561 TPR_20: Tetratricopep 84.1 3.5 7.5E-05 37.1 6.7 53 142-194 18-70 (90)
305 KOG0530 Protein farnesyltransf 83.9 33 0.00071 37.1 14.6 147 314-481 37-185 (318)
306 COG3898 Uncharacterized membra 83.4 90 0.0019 35.7 30.0 123 328-471 91-216 (531)
307 PF10255 Paf67: RNA polymerase 83.3 4.4 9.5E-05 46.5 8.7 122 340-471 58-192 (404)
308 TIGR02561 HrpB1_HrpK type III 82.9 8.9 0.00019 37.9 9.3 76 330-409 19-94 (153)
309 PF10579 Rapsyn_N: Rapsyn N-te 82.8 5.2 0.00011 35.1 6.9 64 359-424 8-74 (80)
310 PF11207 DUF2989: Protein of u 82.7 6.7 0.00014 40.7 8.8 76 336-413 121-198 (203)
311 KOG3616 Selective LIM binding 82.1 28 0.0006 42.2 14.4 74 332-418 743-816 (1636)
312 PF07720 TPR_3: Tetratricopept 82.0 3.4 7.5E-05 30.6 4.8 33 444-476 2-36 (36)
313 COG4976 Predicted methyltransf 81.5 1.7 3.7E-05 45.6 4.1 66 403-484 5-71 (287)
314 PF07721 TPR_4: Tetratricopept 80.9 1.9 4.1E-05 29.3 2.9 25 147-171 2-26 (26)
315 PRK13184 pknD serine/threonine 80.6 8.7 0.00019 48.7 10.6 117 361-488 479-604 (932)
316 PF11207 DUF2989: Protein of u 80.5 15 0.00033 38.0 10.5 84 366-463 115-198 (203)
317 PF10579 Rapsyn_N: Rapsyn N-te 80.4 6.1 0.00013 34.7 6.5 55 665-721 15-70 (80)
318 COG2912 Uncharacterized conser 80.3 3.6 7.8E-05 44.4 6.2 71 777-847 180-251 (269)
319 KOG4814 Uncharacterized conser 80.2 12 0.00025 44.8 10.5 100 360-475 357-460 (872)
320 PF04910 Tcf25: Transcriptiona 79.2 40 0.00087 38.3 14.5 109 362-485 108-232 (360)
321 TIGR03362 VI_chp_7 type VI sec 78.5 69 0.0015 35.5 15.6 153 666-837 109-275 (301)
322 COG3898 Uncharacterized membra 78.2 1.3E+02 0.0029 34.4 30.1 136 327-486 236-371 (531)
323 KOG1839 Uncharacterized protei 76.9 11 0.00023 48.5 9.7 137 327-472 938-1086(1236)
324 KOG2581 26S proteasome regulat 76.8 1.1E+02 0.0024 35.1 16.4 149 331-492 136-300 (493)
325 PF08424 NRDE-2: NRDE-2, neces 76.7 52 0.0011 36.7 14.4 134 338-477 48-188 (321)
326 PRK12798 chemotaxis protein; R 76.2 1.6E+02 0.0034 34.1 23.4 231 328-721 87-322 (421)
327 smart00386 HAT HAT (Half-A-TPR 75.1 6.4 0.00014 27.0 4.4 31 457-487 1-31 (33)
328 PF10373 EST1_DNA_bind: Est1 D 75.0 8.1 0.00018 41.4 7.3 62 376-455 1-62 (278)
329 KOG1258 mRNA processing protei 74.2 1.4E+02 0.003 35.9 17.1 154 323-489 333-487 (577)
330 COG3629 DnrI DNA-binding trans 73.4 15 0.00033 40.1 8.7 63 358-422 154-216 (280)
331 KOG1310 WD40 repeat protein [G 73.3 9.5 0.00021 44.5 7.3 105 354-476 371-478 (758)
332 PF04053 Coatomer_WDAD: Coatom 72.4 53 0.0011 38.5 13.4 108 311-421 251-375 (443)
333 KOG3364 Membrane protein invol 72.3 34 0.00073 33.4 9.6 66 358-423 33-101 (149)
334 KOG2396 HAT (Half-A-TPR) repea 71.8 27 0.00058 40.8 10.4 90 375-482 89-179 (568)
335 PF10516 SHNi-TPR: SHNi-TPR; 71.3 6.2 0.00014 29.7 3.6 30 394-423 2-31 (38)
336 PF08424 NRDE-2: NRDE-2, neces 71.0 81 0.0018 35.2 14.1 78 341-422 5-94 (321)
337 KOG0276 Vesicle coat complex C 70.7 15 0.00033 43.6 8.2 63 781-843 669-752 (794)
338 KOG2041 WD40 repeat protein [G 70.1 2.7E+02 0.0058 34.2 18.1 98 342-469 839-936 (1189)
339 KOG3783 Uncharacterized conser 69.9 2.4E+02 0.0053 33.6 24.5 99 375-490 251-350 (546)
340 TIGR03504 FimV_Cterm FimV C-te 69.4 7.3 0.00016 30.3 3.7 26 781-806 2-27 (44)
341 PF04190 DUF410: Protein of un 69.3 1.7E+02 0.0037 31.6 16.8 83 355-472 88-170 (260)
342 PF12739 TRAPPC-Trs85: ER-Golg 68.2 1.1E+02 0.0023 35.6 14.8 28 448-475 375-402 (414)
343 PF07720 TPR_3: Tetratricopept 68.1 14 0.00031 27.3 5.0 31 780-810 3-35 (36)
344 PF10255 Paf67: RNA polymerase 68.1 7.3 0.00016 44.7 5.1 65 657-722 123-192 (404)
345 cd02682 MIT_AAA_Arch MIT: doma 67.9 35 0.00076 29.8 8.0 39 26-64 5-50 (75)
346 PF04053 Coatomer_WDAD: Coatom 66.9 66 0.0014 37.7 12.7 76 327-419 324-399 (443)
347 COG3629 DnrI DNA-binding trans 66.9 28 0.00061 38.1 9.0 66 318-385 150-215 (280)
348 KOG2041 WD40 repeat protein [G 66.7 26 0.00056 42.3 9.1 103 366-468 769-877 (1189)
349 cd02680 MIT_calpain7_2 MIT: do 66.7 9 0.00019 33.4 4.2 33 24-56 3-35 (75)
350 KOG0530 Protein farnesyltransf 66.3 1.1E+02 0.0023 33.4 12.7 101 371-489 57-159 (318)
351 PRK15180 Vi polysaccharide bio 66.0 19 0.00042 41.6 7.7 131 332-482 300-430 (831)
352 COG4976 Predicted methyltransf 65.6 11 0.00023 39.9 5.2 55 368-424 6-60 (287)
353 PRK13184 pknD serine/threonine 64.1 68 0.0015 41.0 12.8 111 39-195 487-603 (932)
354 KOG1463 26S proteasome regulat 63.7 2.6E+02 0.0056 31.6 17.9 158 318-486 125-294 (411)
355 TIGR03504 FimV_Cterm FimV C-te 63.2 9.4 0.0002 29.7 3.3 26 149-174 2-27 (44)
356 PF15015 NYD-SP12_N: Spermatog 62.8 24 0.00052 40.4 7.5 92 400-493 183-278 (569)
357 KOG1464 COP9 signalosome, subu 62.3 1.5E+02 0.0032 32.4 12.9 131 39-215 39-175 (440)
358 cd02684 MIT_2 MIT: domain cont 61.0 15 0.00033 31.9 4.6 33 24-56 3-35 (75)
359 KOG3364 Membrane protein invol 60.4 17 0.00036 35.4 5.1 45 778-822 71-115 (149)
360 KOG0687 26S proteasome regulat 60.3 96 0.0021 34.6 11.4 123 339-476 82-214 (393)
361 KOG0985 Vesicle coat protein c 59.5 3.7E+02 0.0081 34.6 17.1 122 355-488 1102-1260(1666)
362 KOG4814 Uncharacterized conser 59.1 31 0.00068 41.4 7.9 77 398-484 359-435 (872)
363 cd02678 MIT_VPS4 MIT: domain c 58.2 19 0.00042 31.1 4.8 33 24-56 3-35 (75)
364 PF00244 14-3-3: 14-3-3 protei 58.1 2.6E+02 0.0056 29.8 14.7 136 324-471 4-197 (236)
365 cd02683 MIT_1 MIT: domain cont 58.1 18 0.00039 31.6 4.6 32 24-55 3-34 (77)
366 PF10516 SHNi-TPR: SHNi-TPR; 57.6 16 0.00035 27.5 3.6 31 444-474 2-32 (38)
367 cd02681 MIT_calpain7_1 MIT: do 55.9 20 0.00044 31.3 4.5 32 25-56 4-35 (76)
368 PF09670 Cas_Cas02710: CRISPR- 55.8 2.9E+02 0.0064 31.6 15.2 61 323-385 133-197 (379)
369 KOG3807 Predicted membrane pro 54.3 1.7E+02 0.0037 32.7 12.0 58 152-212 281-338 (556)
370 COG5159 RPN6 26S proteasome re 54.0 3.4E+02 0.0074 30.0 20.7 163 31-210 7-190 (421)
371 PF11817 Foie-gras_1: Foie gra 54.0 83 0.0018 33.6 9.9 68 393-470 178-245 (247)
372 PF04212 MIT: MIT (microtubule 53.4 28 0.00061 29.3 5.0 31 25-55 3-33 (69)
373 KOG2561 Adaptor protein NUB1, 53.2 63 0.0014 37.3 8.8 121 26-175 162-296 (568)
374 PF10373 EST1_DNA_bind: Est1 D 52.5 1.8E+02 0.0039 30.9 12.3 140 340-492 1-150 (278)
375 cd02677 MIT_SNX15 MIT: domain 52.4 23 0.00051 30.8 4.3 33 24-56 3-35 (75)
376 PF12854 PPR_1: PPR repeat 51.8 31 0.00066 24.9 4.2 26 393-418 7-32 (34)
377 KOG1464 COP9 signalosome, subu 51.7 3.6E+02 0.0078 29.5 15.7 206 160-422 41-260 (440)
378 KOG0985 Vesicle coat protein c 51.6 6.6E+02 0.014 32.6 24.9 63 775-838 1310-1380(1666)
379 COG5187 RPN7 26S proteasome re 51.5 2E+02 0.0044 31.7 11.9 129 335-477 89-226 (412)
380 smart00101 14_3_3 14-3-3 homol 51.0 3.5E+02 0.0075 29.1 13.8 26 325-350 5-30 (244)
381 COG3947 Response regulator con 50.7 49 0.0011 36.4 7.2 62 359-422 281-342 (361)
382 smart00386 HAT HAT (Half-A-TPR 49.3 40 0.00087 22.8 4.5 30 792-821 1-30 (33)
383 PF14863 Alkyl_sulf_dimr: Alky 48.3 60 0.0013 31.9 6.9 46 27-72 70-115 (141)
384 PF11817 Foie-gras_1: Foie gra 47.5 76 0.0017 33.9 8.4 60 148-207 180-240 (247)
385 KOG2063 Vacuolar assembly/sort 46.8 7.4E+02 0.016 31.7 17.7 58 18-75 495-554 (877)
386 COG2912 Uncharacterized conser 46.8 75 0.0016 34.6 8.0 70 394-479 182-251 (269)
387 smart00745 MIT Microtubule Int 46.5 39 0.00084 29.1 4.9 33 23-55 4-36 (77)
388 PF12854 PPR_1: PPR repeat 46.0 40 0.00087 24.3 4.1 27 777-803 6-32 (34)
389 KOG1914 mRNA cleavage and poly 45.5 6.2E+02 0.013 30.5 15.4 136 337-492 309-450 (656)
390 COG3914 Spy Predicted O-linked 43.3 1.8E+02 0.0038 35.1 10.8 94 328-425 74-174 (620)
391 PF15015 NYD-SP12_N: Spermatog 43.0 93 0.002 35.8 8.2 56 778-833 228-283 (569)
392 KOG4014 Uncharacterized conser 42.9 2E+02 0.0044 29.7 9.7 83 333-422 47-141 (248)
393 COG3947 Response regulator con 42.8 78 0.0017 34.8 7.3 62 322-385 280-341 (361)
394 COG4455 ImpE Protein of avirul 42.6 2.1E+02 0.0045 30.5 10.0 60 702-811 9-68 (273)
395 COG5191 Uncharacterized conser 42.3 33 0.00072 37.8 4.4 76 393-484 107-183 (435)
396 PHA02537 M terminase endonucle 42.1 38 0.00082 36.0 4.8 37 775-811 166-211 (230)
397 cd02656 MIT MIT: domain contai 41.6 51 0.0011 28.2 4.8 32 24-55 3-34 (75)
398 KOG0276 Vesicle coat complex C 41.6 1E+02 0.0022 37.0 8.5 50 366-422 646-695 (794)
399 cd02680 MIT_calpain7_2 MIT: do 41.5 43 0.00092 29.3 4.2 22 364-385 13-34 (75)
400 smart00299 CLH Clathrin heavy 41.2 3.2E+02 0.0068 25.9 15.4 118 333-488 19-136 (140)
401 KOG3807 Predicted membrane pro 41.1 5.7E+02 0.012 28.8 14.1 86 333-422 196-304 (556)
402 cd00215 PTS_IIA_lac PTS_IIA, P 41.0 43 0.00093 30.7 4.4 30 26-55 14-43 (97)
403 KOG4014 Uncharacterized conser 40.5 2.5E+02 0.0054 29.1 9.9 112 354-488 31-155 (248)
404 PF13041 PPR_2: PPR repeat fam 40.1 93 0.002 24.0 5.7 39 359-399 5-44 (50)
405 KOG1310 WD40 repeat protein [G 39.4 62 0.0013 38.2 6.2 70 408-493 389-461 (758)
406 KOG0546 HSP90 co-chaperone CPR 39.4 42 0.00092 37.6 4.8 106 365-486 230-352 (372)
407 TIGR00823 EIIA-LAC phosphotran 38.8 48 0.001 30.5 4.4 30 26-55 16-45 (99)
408 PRK09591 celC cellobiose phosp 38.6 48 0.0011 30.8 4.4 30 26-55 19-48 (104)
409 KOG0686 COP9 signalosome, subu 37.7 1.4E+02 0.0029 34.4 8.4 105 358-470 151-256 (466)
410 KOG1497 COP9 signalosome, subu 37.7 2.3E+02 0.0051 31.6 9.9 103 360-472 106-213 (399)
411 PRK10454 PTS system N,N'-diace 37.6 53 0.0011 31.1 4.5 30 26-55 30-59 (115)
412 PF13041 PPR_2: PPR repeat fam 37.3 69 0.0015 24.8 4.6 30 393-422 3-32 (50)
413 PF02255 PTS_IIA: PTS system, 37.0 59 0.0013 29.7 4.6 30 26-55 13-42 (96)
414 PF10952 DUF2753: Protein of u 36.7 1.4E+02 0.003 28.8 7.0 72 396-468 4-75 (140)
415 PF07163 Pex26: Pex26 protein; 36.2 1.5E+02 0.0032 32.6 8.1 54 665-718 127-182 (309)
416 COG1747 Uncharacterized N-term 36.1 8.3E+02 0.018 29.3 14.7 138 345-489 90-251 (711)
417 PF09670 Cas_Cas02710: CRISPR- 35.2 7.3E+02 0.016 28.4 15.7 64 27-94 131-196 (379)
418 PF13934 ELYS: Nuclear pore co 34.7 2.8E+02 0.006 29.4 10.0 120 340-489 65-184 (226)
419 PF11846 DUF3366: Domain of un 34.5 1.2E+02 0.0026 30.9 7.1 35 441-475 142-176 (193)
420 PF01535 PPR: PPR repeat; Int 34.4 55 0.0012 22.0 3.2 25 188-212 3-27 (31)
421 PF14863 Alkyl_sulf_dimr: Alky 34.0 1.5E+02 0.0033 29.1 7.2 51 443-493 70-120 (141)
422 KOG2908 26S proteasome regulat 33.8 2E+02 0.0043 32.4 8.7 64 154-217 83-147 (380)
423 COG1447 CelC Phosphotransferas 33.6 65 0.0014 30.0 4.3 29 27-55 19-47 (105)
424 cd02681 MIT_calpain7_1 MIT: do 33.1 66 0.0014 28.1 4.1 17 369-385 18-34 (76)
425 COG5107 RNA14 Pre-mRNA 3'-end 33.0 5.6E+02 0.012 30.2 12.2 124 344-489 31-164 (660)
426 PF10938 YfdX: YfdX protein; 32.9 2E+02 0.0043 28.6 8.0 105 660-806 6-145 (155)
427 PF10952 DUF2753: Protein of u 32.7 1.5E+02 0.0033 28.5 6.7 61 150-213 5-75 (140)
428 KOG0739 AAA+-type ATPase [Post 32.2 5.3E+02 0.011 28.8 11.4 33 23-55 6-38 (439)
429 cd02682 MIT_AAA_Arch MIT: doma 31.8 78 0.0017 27.7 4.3 32 448-479 11-49 (75)
430 PF10938 YfdX: YfdX protein; 31.4 3.3E+02 0.0071 27.1 9.3 98 325-422 6-146 (155)
431 COG4941 Predicted RNA polymera 31.1 7.5E+02 0.016 28.0 12.5 142 336-481 211-403 (415)
432 KOG2561 Adaptor protein NUB1, 30.3 3E+02 0.0066 32.0 9.6 127 360-487 166-311 (568)
433 PF04212 MIT: MIT (microtubule 30.1 84 0.0018 26.4 4.2 31 144-174 3-33 (69)
434 KOG2396 HAT (Half-A-TPR) repea 30.0 4.5E+02 0.0097 31.3 11.1 89 303-396 88-177 (568)
435 PF12739 TRAPPC-Trs85: ER-Golg 29.9 6.1E+02 0.013 29.3 12.7 129 354-487 204-351 (414)
436 PF01535 PPR: PPR repeat; Int 29.9 72 0.0016 21.4 3.2 27 395-421 2-28 (31)
437 KOG0890 Protein kinase of the 29.6 3.3E+02 0.0072 38.1 11.2 136 152-401 1389-1525(2382)
438 cd02684 MIT_2 MIT: domain cont 29.5 89 0.0019 27.1 4.3 17 369-385 18-34 (75)
439 KOG0529 Protein geranylgeranyl 29.1 4.6E+02 0.0099 30.4 10.8 128 335-482 89-234 (421)
440 cd02679 MIT_spastin MIT: domai 28.6 87 0.0019 27.6 4.1 14 338-351 6-19 (79)
441 PF13812 PPR_3: Pentatricopept 28.0 1.2E+02 0.0026 20.8 4.2 26 188-213 4-29 (34)
442 TIGR00756 PPR pentatricopeptid 27.8 1.1E+02 0.0023 20.8 3.9 28 395-422 2-29 (35)
443 PF07219 HemY_N: HemY protein 27.4 2.3E+02 0.005 26.2 7.0 51 777-827 58-108 (108)
444 KOG0687 26S proteasome regulat 26.9 9.6E+02 0.021 27.1 13.3 58 142-201 100-157 (393)
445 PF14689 SPOB_a: Sensor_kinase 26.8 1.2E+02 0.0026 25.3 4.5 31 691-721 20-50 (62)
446 KOG4279 Serine/threonine prote 25.5 72 0.0016 39.1 3.9 55 369-424 255-318 (1226)
447 COG4455 ImpE Protein of avirul 25.2 3E+02 0.0065 29.3 7.8 57 331-390 11-67 (273)
448 PF04097 Nic96: Nup93/Nic96; 24.5 2.7E+02 0.0058 34.1 8.8 31 817-847 510-540 (613)
449 cd02677 MIT_SNX15 MIT: domain 24.4 1.2E+02 0.0025 26.5 4.1 17 369-385 18-34 (75)
450 PF09205 DUF1955: Domain of un 24.2 7E+02 0.015 24.6 12.6 60 361-422 89-149 (161)
451 KOG3677 RNA polymerase I-assoc 23.5 3.9E+02 0.0086 30.9 8.9 125 328-471 159-300 (525)
452 smart00671 SEL1 Sel1-like repe 23.1 1.4E+02 0.0029 20.9 3.7 29 444-472 2-34 (36)
453 KOG2908 26S proteasome regulat 22.2 9.5E+02 0.021 27.3 11.4 95 369-473 87-187 (380)
454 PF08238 Sel1: Sel1 repeat; I 22.1 2.6E+02 0.0056 19.8 5.2 35 61-95 1-36 (39)
455 COG5191 Uncharacterized conser 22.0 1.2E+02 0.0025 33.8 4.3 72 347-422 99-171 (435)
456 PF03745 DUF309: Domain of unk 21.6 4.7E+02 0.01 21.8 7.1 53 783-835 4-62 (62)
457 PF06957 COPI_C: Coatomer (COP 21.5 1.3E+02 0.0027 35.1 4.8 31 25-55 202-232 (422)
458 cd02683 MIT_1 MIT: domain cont 21.3 1.4E+02 0.003 26.1 4.1 31 144-174 4-34 (77)
459 PF02064 MAS20: MAS20 protein 21.3 1.4E+02 0.003 28.6 4.3 29 693-721 62-90 (121)
460 PF12583 TPPII_N: Tripeptidyl 20.9 1.9E+02 0.0041 28.1 5.0 39 450-488 83-121 (139)
461 PF04097 Nic96: Nup93/Nic96; 20.7 1.1E+03 0.023 29.0 12.9 29 450-479 512-540 (613)
462 PHA02537 M terminase endonucle 20.6 3.5E+02 0.0076 28.8 7.6 102 365-476 91-211 (230)
463 cd02679 MIT_spastin MIT: domai 20.4 1.6E+02 0.0034 26.0 4.2 36 371-423 3-38 (79)
No 1
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.1e-75 Score=630.36 Aligned_cols=668 Identities=45% Similarity=0.677 Sum_probs=545.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCC
Q 003047 27 TATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTE 106 (854)
Q Consensus 27 ~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 106 (854)
-.+|..+|.++|..++||.|+++++.+-.++..+..++||-+++.||+.+|++...+++.++.+...+ +.+.+..+
T Consensus 17 ~~~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~----~~~~~~~~ 92 (696)
T KOG2471|consen 17 NYSLLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADA----DAPGDVSS 92 (696)
T ss_pred hHHHHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhh----ccccchhc
Confidence 46789999999999999999999999999999999999999999999999999999999999887766 22222111
Q ss_pred CCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHH
Q 003047 107 GGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQ 186 (854)
Q Consensus 107 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~ 186 (854)
-.++.+..+.+||.||+||+.++|.+|+++.+++++.++++++.++..
T Consensus 93 --------------------------------gld~~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~ 140 (696)
T KOG2471|consen 93 --------------------------------GLSLKQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAAS 140 (696)
T ss_pred --------------------------------chhhhcchHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHH
Confidence 234566788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhh
Q 003047 187 ICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENA 266 (854)
Q Consensus 187 ~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (854)
+|++..++|+.+.+.++|++.++++++.+...... .. ++.+.. ||
T Consensus 141 v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~--~~--------------------------gn~~~~---nn---- 185 (696)
T KOG2471|consen 141 VTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMK--LV--------------------------GNHIPA---NN---- 185 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--cc--------------------------ccccch---hh----
Confidence 99999999999999999999999999877654221 00 000110 00
Q ss_pred hhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 003047 267 LSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKL 346 (854)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~ 346 (854)
+-.+.+ . .-.+++..+.+.+.+++.||.+.|+++.+++.+++++|.
T Consensus 186 ~~kt~s--------~--------------------------~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~ 231 (696)
T KOG2471|consen 186 LLKTLS--------P--------------------------SAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKH 231 (696)
T ss_pred hcccCC--------c--------------------------chhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhh
Confidence 000000 0 001223334455667999999999999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCC-------ccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003047 347 AMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMG-------ISSMFNNNLGCIYYQLAKYHTSSVFLSKA 419 (854)
Q Consensus 347 al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~-------~~a~~~nnLG~iy~~~g~~~eAi~~f~kA 419 (854)
++++. .+.+.++++++++++..|+|.+|.+.+...-...+|. ....+||||||||+++|.|..++.+|.||
T Consensus 232 vmn~a--~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kA 309 (696)
T KOG2471|consen 232 VMNIA--QDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKA 309 (696)
T ss_pred hhhhc--CCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHH
Confidence 99999 8999999999999999999999999998865422222 13467799999999999999999999999
Q ss_pred HH-hchhcccC-CccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccC
Q 003047 420 LS-NSASLRKD-KPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVA 497 (854)
Q Consensus 420 L~-~~~~l~~~-~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e 497 (854)
|+ .+.++..+ .+-+...+..+++.+++||.|..|++.|++-.|++||.+++..++.+|++|+|||+|||+.++++..+
T Consensus 310 L~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l~e 389 (696)
T KOG2471|consen 310 LRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGLLE 389 (696)
T ss_pred HHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhh
Confidence 97 55555433 23334455677889999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCccccc-c
Q 003047 498 PGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYS-K 576 (854)
Q Consensus 498 ~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~-~ 576 (854)
+.++.+.++++++.+||+| ||+.++..+. ..+.. ++ +..+|.++++||+.|+||||.|.|+ .+... -
T Consensus 390 e~~~s~s~~~i~~~vig~g-~rr~~m~~~n---t~~~~--~q-----S~~~p~~slefA~vCLrnal~Ll~e-~q~~~~~ 457 (696)
T KOG2471|consen 390 EGNSSLSRSEIRVHVIGKG-NRRQLMIEEN---TYVEL--AQ-----SNQLPKLSLEFARVCLRNALYLLNE-KQDLGSI 457 (696)
T ss_pred hccCCcccccceeeeeccc-chhheeeccc---ceecc--cc-----ccCCCccccHHHHHHHHhhhhcCch-hhcchhh
Confidence 8888888999999999999 8887777753 23332 33 5899999999999999999999988 33221 1
Q ss_pred cCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHH
Q 003047 577 FGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQ 656 (854)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 656 (854)
++.++..+.+++..-+.-+ ++ ..|.++.++ +.++ .+|+++|+..+.+++||+
T Consensus 458 ~~~a~ns~~~g~~~e~~e~-------------~~----------t~~Sk~h~g---d~~~--~~p~ssp~~~e~leNm~~ 509 (696)
T KOG2471|consen 458 LSVAMNSTKEGSSSEHEEG-------------NT----------TTDSKEHKG---DMSQ--EIPQSSPSAFEDLENMRQ 509 (696)
T ss_pred hhhhccccccCCCCcCCCC-------------CC----------CcchhcCCC---CCCc--cCCCCCcchHHHHHHHHH
Confidence 2222222222211000000 00 001111111 1222 368899999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhh
Q 003047 657 ALLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDC 736 (854)
Q Consensus 657 ~~l~~la~v~l~lg~~~~Al~~~~~lL~~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~ 736 (854)
+|++++|||.+++||+..|+.++.++|..|+++++|+||||+|+|||||.++|+.||+.||++.+....++.+++-..+.
T Consensus 510 ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df 589 (696)
T KOG2471|consen 510 AIFANMAYVELELGDPIKALSAATKLLQLADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDF 589 (696)
T ss_pred HHHHHHHHHHHHhcChhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999655667777888888
Q ss_pred hhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHH
Q 003047 737 EQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILP--RSTEA 814 (854)
Q Consensus 737 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P--~~~~a 814 (854)
++|-++. ++++..++++ |+ +.|.+|++|+..+++|||.+++.+|++++|+.|+.+|..+.| ..+.+
T Consensus 590 ~~~~~~~-------e~l~~s~~r~----~q-~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A 657 (696)
T KOG2471|consen 590 DQWWKHT-------ETLDPSTGRT----RQ-SVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQA 657 (696)
T ss_pred hhhhccc-------cccCCcCCCC----cc-cccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHH
Confidence 8886665 3677677775 55 789999999999999999999999999999999999999998 56899
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCcccccccccccC
Q 003047 815 TLTAIYVDLMLGKSQEALAKLKYCNHVRFLPSGLQLSKS 853 (854)
Q Consensus 815 ~~l~~y~~L~~G~~~eA~~~lk~~~~~~~~~~~~~~~~~ 853 (854)
+.+.+|+.|++|+.+.|++++|+++++|++|.-+++.++
T Consensus 658 ~~lavyidL~~G~~q~al~~lk~~~~~~~v~~~~evr~~ 696 (696)
T KOG2471|consen 658 TVLAVYIDLMLGRSQDALARLKQCTHVSFVPGRLEVRAS 696 (696)
T ss_pred HHHHHHHHHhcCCCcchHHHHHhcccccccCcchhhccC
Confidence 999999999999999999999999999999998877654
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-35 Score=328.93 Aligned_cols=447 Identities=16% Similarity=0.102 Sum_probs=314.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 003047 30 LAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGG 109 (854)
Q Consensus 30 l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 109 (854)
...-|.+.|+.|+|.+|++....+-..+|.+-..+--++..+|-.+ ++.+.......++
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~------r~d~s~a~~~~a~--------------- 109 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGS------RLDKSSAGSLLAI--------------- 109 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhccc------chhhhhhhhhhhh---------------
Confidence 5667889999999999999999999999999888777776655222 2222222222222
Q ss_pred CCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHH
Q 003047 110 NIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICL 189 (854)
Q Consensus 110 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l 189 (854)
.+ .+.-+..|-|+|++|...|++..|+..|+.+++..+..-| .+.
T Consensus 110 -----------------------------r~-~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fid-----a~i 154 (966)
T KOG4626|consen 110 -----------------------------RK-NPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFID-----AYI 154 (966)
T ss_pred -----------------------------hc-cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhH-----HHh
Confidence 11 4556779999999999999999999999999995544333 588
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhh-
Q 003047 190 LLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALS- 268 (854)
Q Consensus 190 ~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 268 (854)
+++..|..+|+...|- +-|..++.++ ++ ..+...+.+|.++
T Consensus 155 nla~al~~~~~~~~a~---~~~~~alqln----P~-------------------------------l~ca~s~lgnLlka 196 (966)
T KOG4626|consen 155 NLAAALVTQGDLELAV---QCFFEALQLN----PD-------------------------------LYCARSDLGNLLKA 196 (966)
T ss_pred hHHHHHHhcCCCcccH---HHHHHHHhcC----cc-------------------------------hhhhhcchhHHHHh
Confidence 8999999999999997 5667777775 32 1223333444444
Q ss_pred -hhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 003047 269 -RTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLA 347 (854)
Q Consensus 269 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~a 347 (854)
+++-|+..-|...+ + .| ..-..++.|||-++ ..+|++-.|+..++++
T Consensus 197 ~Grl~ea~~cYlkAi-----~--~q---p~fAiawsnLg~~f----------------------~~~Gei~~aiq~y~eA 244 (966)
T KOG4626|consen 197 EGRLEEAKACYLKAI-----E--TQ---PCFAIAWSNLGCVF----------------------NAQGEIWLAIQHYEEA 244 (966)
T ss_pred hcccchhHHHHHHHH-----h--hC---CceeeeehhcchHH----------------------hhcchHHHHHHHHHHh
Confidence 44545555555554 1 11 01113444554433 2367777777777777
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcc
Q 003047 348 MNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLR 427 (854)
Q Consensus 348 l~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~ 427 (854)
+.++ |+..++++++|++|...+.|++|+.+|.+++. ..| ..+.++-|||+||+.+|..+.||..|++||..
T Consensus 245 vkld--P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~-lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~----- 315 (966)
T KOG4626|consen 245 VKLD--PNFLDAYINLGNVYKEARIFDRAVSCYLRALN-LRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALEL----- 315 (966)
T ss_pred hcCC--CcchHHHhhHHHHHHHHhcchHHHHHHHHHHh-cCC-cchhhccceEEEEeccccHHHHHHHHHHHHhc-----
Confidence 7777 77777777777777777777777777777777 566 35777777777777777777777777777776
Q ss_pred cCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcc
Q 003047 428 KDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSE 507 (854)
Q Consensus 428 ~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~ 507 (854)
.|..+.++.|+|+++-..|+..||.+||.++|.+.|+++++.++||+++. ..+
T Consensus 316 -----------~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~---E~~------------- 368 (966)
T KOG4626|consen 316 -----------QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYR---EQG------------- 368 (966)
T ss_pred -----------CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHH---Hhc-------------
Confidence 34456677777777777777777777777777777777777777777665 110
Q ss_pred cceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccc
Q 003047 508 VKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEE 587 (854)
Q Consensus 508 ~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~ 587 (854)
.++.|...|+.||...|+..
T Consensus 369 --------------------------------------------~~e~A~~ly~~al~v~p~~a---------------- 388 (966)
T KOG4626|consen 369 --------------------------------------------KIEEATRLYLKALEVFPEFA---------------- 388 (966)
T ss_pred --------------------------------------------cchHHHHHHHHHHhhChhhh----------------
Confidence 12557777777777777743
Q ss_pred cccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHH
Q 003047 588 SESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVEL 667 (854)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l 667 (854)
.++.+||.++.
T Consensus 389 ---------------------------------------------------------------------aa~nNLa~i~k 399 (966)
T KOG4626|consen 389 ---------------------------------------------------------------------AAHNNLASIYK 399 (966)
T ss_pred ---------------------------------------------------------------------hhhhhHHHHHH
Confidence 22456788888
Q ss_pred HcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhh
Q 003047 668 EMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIID 746 (854)
Q Consensus 668 ~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d 746 (854)
.+|++.+|+.+|+++|. .|...++|.++|+.|. .+|+.++|++|+.+++. .+
T Consensus 400 qqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~k-----e~g~v~~A~q~y~rAI~--~n-------------------- 452 (966)
T KOG4626|consen 400 QQGNLDDAIMCYKEALRIKPTFADALSNMGNTYK-----EMGDVSAAIQCYTRAIQ--IN-------------------- 452 (966)
T ss_pred hcccHHHHHHHHHHHHhcCchHHHHHHhcchHHH-----HhhhHHHHHHHHHHHHh--cC--------------------
Confidence 88888888888888887 7778888888888666 47888888888888882 11
Q ss_pred hhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 003047 747 CEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVD 822 (854)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~ 822 (854)
|. -|++|.|||.+|...|+.++|+..|+++|.++||++.+.-++..++
T Consensus 453 ------------------Pt----------~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 453 ------------------PT----------FAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCL 500 (966)
T ss_pred ------------------cH----------HHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHH
Confidence 32 6778888888888888888888888888888888877766665553
No 3
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-34 Score=320.26 Aligned_cols=428 Identities=17% Similarity=0.074 Sum_probs=338.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCC
Q 003047 34 AALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGNIGS 113 (854)
Q Consensus 34 a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~ 113 (854)
+-.+|+-.+++.+...-..++++.|.-++++.|+|.+.-.+ .++.+++...+.+++
T Consensus 89 ~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker------g~~~~al~~y~~aie------------------ 144 (966)
T KOG4626|consen 89 SAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER------GQLQDALALYRAAIE------------------ 144 (966)
T ss_pred hhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh------chHHHHHHHHHHHHh------------------
Confidence 34567778888888888888888888888888888664433 445667777777774
Q ss_pred cccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHH
Q 003047 114 KVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLD 193 (854)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~ 193 (854)
+ +|+...+|.|+|.+|..+|+.+.|...|.+.++..+.+-. +...+++
T Consensus 145 --------------------------l-~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~c-----a~s~lgn 192 (966)
T KOG4626|consen 145 --------------------------L-KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYC-----ARSDLGN 192 (966)
T ss_pred --------------------------c-CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhh-----hhcchhH
Confidence 1 4667778888888888888888888888888885443322 3455788
Q ss_pred HHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhh--hhh
Q 003047 194 VALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALS--RTL 271 (854)
Q Consensus 194 vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 271 (854)
+.-..|+..+|-. -|.|++... + -.+..|.|++..+. +.+
T Consensus 193 Llka~Grl~ea~~---cYlkAi~~q----p-------------------------------~fAiawsnLg~~f~~~Gei 234 (966)
T KOG4626|consen 193 LLKAEGRLEEAKA---CYLKAIETQ----P-------------------------------CFAIAWSNLGCVFNAQGEI 234 (966)
T ss_pred HHHhhcccchhHH---HHHHHHhhC----C-------------------------------ceeeeehhcchHHhhcchH
Confidence 8888888888863 456665443 0 12234444444444 334
Q ss_pred hhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Q 003047 272 SEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIA 351 (854)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~ 351 (854)
-.+.-.|+... .+++... -++-|||.||. ..+.++.|+.++.+++.+-
T Consensus 235 ~~aiq~y~eAv---kldP~f~-------dAYiNLGnV~k----------------------e~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 235 WLAIQHYEEAV---KLDPNFL-------DAYINLGNVYK----------------------EARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHHHHHHHhh---cCCCcch-------HHHhhHHHHHH----------------------HHhcchHHHHHHHHHHhcC
Confidence 44455555554 2333222 26777777773 3578899999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCc
Q 003047 352 RGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKP 431 (854)
Q Consensus 352 ~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~ 431 (854)
|++..++-++|-+|+.+|..+-||.+|++++. .+|+ .+.+|+|||..+...|+..+|..+|.+||..
T Consensus 283 --pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~-~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--------- 349 (966)
T KOG4626|consen 283 --PNHAVAHGNLACIYYEQGLLDLAIDTYKRALE-LQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRL--------- 349 (966)
T ss_pred --CcchhhccceEEEEeccccHHHHHHHHHHHHh-cCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHh---------
Confidence 99999999999999999999999999999999 7995 6899999999999999999999999999999
Q ss_pred cccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCccccee
Q 003047 432 LKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVH 511 (854)
Q Consensus 432 l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~ 511 (854)
.+..+.+++|||++|..+|+.++|...|.++++++|+.+.++.+||.++- +++
T Consensus 350 -------~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~k---qqg----------------- 402 (966)
T KOG4626|consen 350 -------CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYK---QQG----------------- 402 (966)
T ss_pred -------CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHH---hcc-----------------
Confidence 45678999999999999999999999999999999999999999998776 221
Q ss_pred eccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccc
Q 003047 512 VIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESS 591 (854)
Q Consensus 512 ~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~ 591 (854)
.+..|+.||+.||.+.|....
T Consensus 403 ----------------------------------------nl~~Ai~~YkealrI~P~fAd------------------- 423 (966)
T KOG4626|consen 403 ----------------------------------------NLDDAIMCYKEALRIKPTFAD------------------- 423 (966)
T ss_pred ----------------------------------------cHHHHHHHHHHHHhcCchHHH-------------------
Confidence 346799999999999999542
Q ss_pred cccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCC
Q 003047 592 EGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMEN 671 (854)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~ 671 (854)
++.++|.++-++||
T Consensus 424 ------------------------------------------------------------------a~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 424 ------------------------------------------------------------------ALSNMGNTYKEMGD 437 (966)
T ss_pred ------------------------------------------------------------------HHHhcchHHHHhhh
Confidence 36789999999999
Q ss_pred HHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhc
Q 003047 672 PVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEEL 750 (854)
Q Consensus 672 ~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 750 (854)
-..|+.++.+++. .|...+++.+||.+|. ..|.+.+||..|+.+++ ++
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~k-----DsGni~~AI~sY~~aLk--lk------------------------ 486 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYK-----DSGNIPEAIQSYRTALK--LK------------------------ 486 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhh-----ccCCcHHHHHHHHHHHc--cC------------------------
Confidence 9999999999987 8999999999999887 78999999999999994 22
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003047 751 NGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSI 807 (854)
Q Consensus 751 ~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~ 807 (854)
|+ .+.++-||+.++..--+|.+=-+-+++..++
T Consensus 487 --------------PD----------fpdA~cNllh~lq~vcdw~D~d~~~~kl~si 519 (966)
T KOG4626|consen 487 --------------PD----------FPDAYCNLLHCLQIVCDWTDYDKRMKKLVSI 519 (966)
T ss_pred --------------CC----------CchhhhHHHHHHHHHhcccchHHHHHHHHHH
Confidence 33 4667899998887777666655556665554
No 4
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=2e-27 Score=303.06 Aligned_cols=365 Identities=12% Similarity=0.010 Sum_probs=236.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccC
Q 003047 26 VTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQT 105 (854)
Q Consensus 26 ~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 105 (854)
-++.|+.++-....++++|.|.+.++|++.++|+++.++..++.+....++ +.++...+.+.++. .|
T Consensus 27 ~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~------~~~A~~~l~~l~~~-------~P 93 (1157)
T PRK11447 27 AQQQLLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGD------SDGAQKLLDRLSQL-------AP 93 (1157)
T ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCC------HHHHHHHHHHHHhh-------CC
Confidence 356699999999999999999999999999999999999999987765543 33455555555521 12
Q ss_pred CCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHH
Q 003047 106 EGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTAL 185 (854)
Q Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~ 185 (854)
+. .. ++.. . ..... ........+.+|.++...|+|++|+++|+++++..++..+ ++
T Consensus 94 ~~------------~~-----~~~~-~---~~~~~-~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~-la- 149 (1157)
T PRK11447 94 DS------------NA-----YRSS-R---TTMLL-STPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELD-LA- 149 (1157)
T ss_pred CC------------hH-----HHHH-H---HHHHh-cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChH-HH-
Confidence 20 00 0000 0 00000 0112223467899999999999999999999986554332 11
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhh
Q 003047 186 QICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASEN 265 (854)
Q Consensus 186 ~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (854)
...+..+....+++++|+. .|++++... ++. .........
T Consensus 150 --~~y~~~~~~~~g~~~~A~~---~L~~ll~~~----P~~-------------------------------~~~~~~LA~ 189 (1157)
T PRK11447 150 --VEYWRLVAKLPAQRPEAIN---QLQRLNADY----PGN-------------------------------TGLRNTLAL 189 (1157)
T ss_pred --HHHHHHHhhCCccHHHHHH---HHHHHHHhC----CCC-------------------------------HHHHHHHHH
Confidence 1122233345699999985 556665443 211 111122222
Q ss_pred hhhhhhh--hhhhhh-hhhhhhhh-----hccccCCCCCCCCCccchhhhh-----hhhcccchhHHHHHH---------
Q 003047 266 ALSRTLS--EETLED-DTVLALSS-----LEISGQNLTRPVGLSSNELSRT-----LVDRSISTVDLKLKL--------- 323 (854)
Q Consensus 266 ~~~~~~~--~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~-----~~~~~~~~~~~~~~l--------- 323 (854)
++ ...+ ++++.. +.+..... ..+-.+.+ ...+.....++.. .++.+.........+
T Consensus 190 ll-~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l-~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d 267 (1157)
T PRK11447 190 LL-FSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQI-KDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD 267 (1157)
T ss_pred HH-HccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHH-hccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence 22 2222 334333 33321000 00000000 0000000000000 001111000001111
Q ss_pred ----HHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccH------
Q 003047 324 ----QLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISS------ 393 (854)
Q Consensus 324 ----~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a------ 393 (854)
...++.+++..|++++|++.+++++.++ |+++.+++.+|.+++.+|++++|+.+|+++++ .+|....
T Consensus 268 p~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~-~~p~~~~~~~~~~ 344 (1157)
T PRK11447 268 PAFRARAQGLAAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALA-LDPHSSNRDKWES 344 (1157)
T ss_pred cchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCccchhHHHH
Confidence 1244788999999999999999999999 99999999999999999999999999999998 5664221
Q ss_pred -------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHH
Q 003047 394 -------MFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCF 466 (854)
Q Consensus 394 -------~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y 466 (854)
.....+|.++.+.|++++|+.+|++++.. .|.+..+++++|.++...|++++|+++|
T Consensus 345 ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~----------------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y 408 (1157)
T PRK11447 345 LLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV----------------DNTDSYAVLGLGDVAMARKDYAAAERYY 408 (1157)
T ss_pred HHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 12235689999999999999999999998 3456788999999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHH
Q 003047 467 QKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 467 ~kAL~l~P~~~~aw~~La~~~i 488 (854)
+++++++|+++.+|..++.++.
T Consensus 409 ~~aL~~~p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 409 QQALRMDPGNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999999999998875
No 5
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=2.7e-27 Score=290.21 Aligned_cols=336 Identities=20% Similarity=0.146 Sum_probs=258.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHH
Q 003047 325 LYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYY 404 (854)
Q Consensus 325 l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~ 404 (854)
+.++.++...|++++|+..+++++... |++..+++.+|.+++..|++++|+.++.+++. ..|. ...++..++.++.
T Consensus 265 ~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~-~~p~-~~~~~~~la~~~~ 340 (899)
T TIGR02917 265 YLKALVDFQKKNYEDARETLQDALKSA--PEYLPALLLAGASEYQLGNLEQAYQYLNQILK-YAPN-SHQARRLLASIQL 340 (899)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC-ChHHHHHHHHHHH
Confidence 446777888899999999999999999 99999999999999999999999999999998 6774 4667778999999
Q ss_pred HcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHH
Q 003047 405 QLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLA 484 (854)
Q Consensus 405 ~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La 484 (854)
..|++++|+..|++++.. .+.+...++.+|.++...|++++|+++|++++.+.|+++.+|..+|
T Consensus 341 ~~g~~~~A~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 404 (899)
T TIGR02917 341 RLGRVDEAIATLSPALGL----------------DPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLG 404 (899)
T ss_pred HCCCHHHHHHHHHHHHhc----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 999999999999998886 2345678889999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 003047 485 ECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNAL 564 (854)
Q Consensus 485 ~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL 564 (854)
.++.. .+ ..+.|+.+|+.++
T Consensus 405 ~~~~~---~~---------------------------------------------------------~~~~A~~~~~~a~ 424 (899)
T TIGR02917 405 ISKLS---QG---------------------------------------------------------DPSEAIADLETAA 424 (899)
T ss_pred HHHHh---CC---------------------------------------------------------ChHHHHHHHHHHH
Confidence 88772 11 1245777777777
Q ss_pred hhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchh
Q 003047 565 HLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYE 644 (854)
Q Consensus 565 ~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~ 644 (854)
.+.|....... .+... ....|+..+. + ....
T Consensus 425 ~~~~~~~~~~~----~l~~~---------------------------------~~~~~~~~~A--------~----~~~~ 455 (899)
T TIGR02917 425 QLDPELGRADL----LLILS---------------------------------YLRSGQFDKA--------L----AAAK 455 (899)
T ss_pred hhCCcchhhHH----HHHHH---------------------------------HHhcCCHHHH--------H----HHHH
Confidence 77766432100 00000 0011111110 0 0000
Q ss_pred hHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcC
Q 003047 645 DVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSG 723 (854)
Q Consensus 645 ~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~ 723 (854)
.+....+. ....+..+|.++...|++.+|+.++++++. .|....++..+|.+| ...|++++|+.++++.+.
T Consensus 456 ~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~-----~~~g~~~~A~~~~~~~~~- 527 (899)
T TIGR02917 456 KLEKKQPD--NASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARID-----IQEGNPDDAIQRFEKVLT- 527 (899)
T ss_pred HHHHhCCC--CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH-----HHCCCHHHHHHHHHHHHH-
Confidence 00000000 113467789999999999999999999997 788888888777755 468999999999999982
Q ss_pred CCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003047 724 GDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQ 803 (854)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~ 803 (854)
.+ |. ....+..++.++...|++++|...+++
T Consensus 528 -~~--------------------------------------~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~ 558 (899)
T TIGR02917 528 -ID--------------------------------------PK----------NLRAILALAGLYLRTGNEEEAVAWLEK 558 (899)
T ss_pred -hC--------------------------------------cC----------cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 11 22 466788899999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCccccc
Q 003047 804 ALSILPRSTEATLTAIYVDLMLGKSQEALAKLKY-CNHVRFLPS 846 (854)
Q Consensus 804 Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~-~~~~~~~~~ 846 (854)
++...|++......++.++...|++++|+.++++ ....|.++.
T Consensus 559 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 602 (899)
T TIGR02917 559 AAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPE 602 (899)
T ss_pred HHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH
Confidence 9999999998899999999999999999999998 555555543
No 6
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=4.2e-27 Score=288.53 Aligned_cols=462 Identities=19% Similarity=0.152 Sum_probs=338.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 003047 30 LAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGG 109 (854)
Q Consensus 30 l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 109 (854)
.+..+..+...|++++|++.+++++...|.++.+++.+|.+++..+ ++.++...+.+.+..
T Consensus 434 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~A~~~~~~a~~~------------- 494 (899)
T TIGR02917 434 DLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKG------DLAKAREAFEKALSI------------- 494 (899)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCC------CHHHHHHHHHHHHhh-------------
Confidence 3445778889999999999999999999999999999998877544 345577777776631
Q ss_pred CCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHH
Q 003047 110 NIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICL 189 (854)
Q Consensus 110 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l 189 (854)
+|++...++++|.++...|++++|+++|++++...+... .++.
T Consensus 495 --------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~ 537 (899)
T TIGR02917 495 --------------------------------EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNL-----RAIL 537 (899)
T ss_pred --------------------------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH-----HHHH
Confidence 345667899999999999999999999999998544322 3577
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhh
Q 003047 190 LLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSR 269 (854)
Q Consensus 190 ~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (854)
.++.+|...|++++|+ ..+++++... ++. .
T Consensus 538 ~l~~~~~~~~~~~~A~---~~~~~~~~~~----~~~------------------------------~------------- 567 (899)
T TIGR02917 538 ALAGLYLRTGNEEEAV---AWLEKAAELN----PQE------------------------------I------------- 567 (899)
T ss_pred HHHHHHHHcCCHHHHH---HHHHHHHHhC----ccc------------------------------h-------------
Confidence 7889999999999998 4667776553 110 0
Q ss_pred hhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 003047 270 TLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMN 349 (854)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~ 349 (854)
...+..+.+|...|++++|++.+++++.
T Consensus 568 ----------------------------------------------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 595 (899)
T TIGR02917 568 ----------------------------------------------------EPALALAQYYLGKGQLKKALAILNEAAD 595 (899)
T ss_pred ----------------------------------------------------hHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0111235566677888888888888888
Q ss_pred hcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccC
Q 003047 350 IARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKD 429 (854)
Q Consensus 350 ~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~ 429 (854)
.. |+++.+++.+|.++...|++++|+++|++++. ..|. .+.++..+|.+|...|++++|+.+|++++..
T Consensus 596 ~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------- 664 (899)
T TIGR02917 596 AA--PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA-LQPD-SALALLLLADAYAVMKNYAKAITSLKRALEL------- 664 (899)
T ss_pred cC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------
Confidence 87 88888888888888888888888888888877 5663 4567777888888888888888888888776
Q ss_pred CccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccc
Q 003047 430 KPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVK 509 (854)
Q Consensus 430 ~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~ 509 (854)
.+....+++.++.++...|++++|+..++++....|+.+..|..+|.++. ..+
T Consensus 665 ---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g--------------- 717 (899)
T TIGR02917 665 ---------KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYL---RQK--------------- 717 (899)
T ss_pred ---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHH---HCC---------------
Confidence 23445677777888888888888888888888888888888888877766 210
Q ss_pred eeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccc
Q 003047 510 VHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESE 589 (854)
Q Consensus 510 ~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~ 589 (854)
.++.|...|+.++...|.... .. .++..
T Consensus 718 ------------------------------------------~~~~A~~~~~~~~~~~~~~~~-~~----~l~~~----- 745 (899)
T TIGR02917 718 ------------------------------------------DYPAAIQAYRKALKRAPSSQN-AI----KLHRA----- 745 (899)
T ss_pred ------------------------------------------CHHHHHHHHHHHHhhCCCchH-HH----HHHHH-----
Confidence 124466666666666555311 00 00000
Q ss_pred cccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHc
Q 003047 590 SSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEM 669 (854)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~l 669 (854)
....|+..+... ..++++. ..+.. ..++..+|.++...
T Consensus 746 ----------------------------~~~~g~~~~A~~-~~~~~l~-----------~~~~~--~~~~~~la~~~~~~ 783 (899)
T TIGR02917 746 ----------------------------LLASGNTAEAVK-TLEAWLK-----------THPND--AVLRTALAELYLAQ 783 (899)
T ss_pred ----------------------------HHHCCCHHHHHH-HHHHHHH-----------hCCCC--HHHHHHHHHHHHHC
Confidence 001122111110 0011110 00000 13466788999999
Q ss_pred CCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhh
Q 003047 670 ENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCE 748 (854)
Q Consensus 670 g~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~ 748 (854)
|++.+|+.++++++. .|+++..+..++.+|. ..|+ .+|+..+++++. ..
T Consensus 784 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-----~~~~-~~A~~~~~~~~~--~~---------------------- 833 (899)
T TIGR02917 784 KDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYL-----ELKD-PRALEYAEKALK--LA---------------------- 833 (899)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----hcCc-HHHHHHHHHHHh--hC----------------------
Confidence 999999999999997 7888888888887554 6888 889999999993 21
Q ss_pred hccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCH
Q 003047 749 ELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKS 828 (854)
Q Consensus 749 ~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~ 828 (854)
|. .+..+.++|.++..+|++++|.++++++++..|.++.+...++.++.+.|++
T Consensus 834 ----------------~~----------~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 887 (899)
T TIGR02917 834 ----------------PN----------IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRK 887 (899)
T ss_pred ----------------CC----------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH
Confidence 22 3456788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 003047 829 QEALAKLKY 837 (854)
Q Consensus 829 ~eA~~~lk~ 837 (854)
++|.+++++
T Consensus 888 ~~A~~~~~~ 896 (899)
T TIGR02917 888 AEARKELDK 896 (899)
T ss_pred HHHHHHHHH
Confidence 999999986
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.97 E-value=1.8e-27 Score=285.31 Aligned_cols=436 Identities=17% Similarity=0.133 Sum_probs=318.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhccc
Q 003047 25 SVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQ 104 (854)
Q Consensus 25 ~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 104 (854)
..+..+...|..+|..|+|++|++.|++++.+.|+ +..+.|+|.|++..+ ++.+++..+.++++
T Consensus 125 ~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~------~~~~Ai~~~~~al~--------- 188 (615)
T TIGR00990 125 KYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALG------DWEKVVEDTTAALE--------- 188 (615)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhC------CHHHHHHHHHHHHH---------
Confidence 34667889999999999999999999999999995 889999999988654 45568888888773
Q ss_pred CCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhH
Q 003047 105 TEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTA 184 (854)
Q Consensus 105 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~ 184 (854)
+ +|++...|+++|.+|..+|+|++|+..|.++..+ .+.....
T Consensus 189 -----------------------------------l-~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~-~~~~~~~- 230 (615)
T TIGR00990 189 -----------------------------------L-DPDYSKALNRRANAYDGLGKYADALLDLTASCII-DGFRNEQ- 230 (615)
T ss_pred -----------------------------------c-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCccHH-
Confidence 1 5667889999999999999999999999877663 3333221
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhh
Q 003047 185 LQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASE 264 (854)
Q Consensus 185 ~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (854)
...++.-+.. ..+. ..++..+... +.. .| ..
T Consensus 231 ---~~~~~~~~l~----~~a~---~~~~~~l~~~----~~~----------------~~------------~~------- 261 (615)
T TIGR00990 231 ---SAQAVERLLK----KFAE---SKAKEILETK----PEN----------------LP------------SV------- 261 (615)
T ss_pred ---HHHHHHHHHH----HHHH---HHHHHHHhcC----CCC----------------CC------------CH-------
Confidence 1111111111 1121 1222222221 000 00 00
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 003047 265 NALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREV 344 (854)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~el 344 (854)
..+|.. +.....+.+.+.+
T Consensus 262 --------------------------------------~~~~~~-----------------------~~~~~~~~~~~~~ 280 (615)
T TIGR00990 262 --------------------------------------TFVGNY-----------------------LQSFRPKPRPAGL 280 (615)
T ss_pred --------------------------------------HHHHHH-----------------------HHHccCCcchhhh
Confidence 000000 0000111122233
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHH---HhcCHHHHHHHHHHhhhc--cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003047 345 KLAMNIARGKDSSLALFLKSQLEY---ARRNHRKAIKLLLALSNR--TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKA 419 (854)
Q Consensus 345 k~al~~~~~P~~~~a~~lla~ly~---~~g~~~kAl~~l~kal~~--~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kA 419 (854)
....+.+ |.....++.+|..+. ..++|++|+++|++++.. ..| ..+.+++++|.+|..+|++++|+.+|+++
T Consensus 281 ~~~~~~~--~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~-~~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 281 EDSNELD--EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGE-KEAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hcccccc--cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444455 555556666665543 357899999999999973 245 45778999999999999999999999999
Q ss_pred HHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCC
Q 003047 420 LSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPG 499 (854)
Q Consensus 420 L~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~ 499 (854)
+.+ .|.....|+++|.++...|++++|+.+|++++.++|+++.+|+.+|.++.. .+
T Consensus 358 l~l----------------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~---~g----- 413 (615)
T TIGR00990 358 IEL----------------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI---KG----- 413 (615)
T ss_pred HHc----------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cC-----
Confidence 998 344567899999999999999999999999999999999999999998872 10
Q ss_pred CCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCC
Q 003047 500 RSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGL 579 (854)
Q Consensus 500 ~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~ 579 (854)
.++.|+.+|++|+.+.|....
T Consensus 414 ----------------------------------------------------~~~~A~~~~~kal~l~P~~~~------- 434 (615)
T TIGR00990 414 ----------------------------------------------------EFAQAGKDYQKSIDLDPDFIF------- 434 (615)
T ss_pred ----------------------------------------------------CHHHHHHHHHHHHHcCccCHH-------
Confidence 246799999999999887431
Q ss_pred CCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHH
Q 003047 580 PSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALL 659 (854)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l 659 (854)
++
T Consensus 435 ------------------------------------------------------------------------------~~ 436 (615)
T TIGR00990 435 ------------------------------------------------------------------------------SH 436 (615)
T ss_pred ------------------------------------------------------------------------------HH
Confidence 24
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhh
Q 003047 660 ANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQ 738 (854)
Q Consensus 660 ~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~ 738 (854)
..+|.++..+|++.+|+..+++++. .|.++..+..+|.+| ..+|++++|+.+|++++. .+
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~-----~~~g~~~~A~~~~~~Al~--l~------------ 497 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELL-----LDQNKFDEAIEKFDTAIE--LE------------ 497 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH-----HHccCHHHHHHHHHHHHh--cC------------
Confidence 5678899999999999999999997 888899998887755 468999999999999993 22
Q ss_pred hhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 003047 739 WRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAM-QGEFERAHHFVTQALSILPRSTEATLT 817 (854)
Q Consensus 739 ~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~-~g~~e~A~~~~~~Al~~~P~~~~a~~l 817 (854)
|. ..+. ......+++.+.++.. +|++++|++++++++.++|++..++..
T Consensus 498 --------------------------p~-~~~~---~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~ 547 (615)
T TIGR00990 498 --------------------------KE-TKPM---YMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVAT 547 (615)
T ss_pred --------------------------Cc-cccc---cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 10 0000 0123334455555544 699999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHh
Q 003047 818 AIYVDLMLGKSQEALAKLKY 837 (854)
Q Consensus 818 ~~y~~L~~G~~~eA~~~lk~ 837 (854)
++.+++++|++++|+..+++
T Consensus 548 la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 548 MAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred HHHHHHHccCHHHHHHHHHH
Confidence 99999999999999999987
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=2.5e-25 Score=283.85 Aligned_cols=563 Identities=13% Similarity=0.075 Sum_probs=344.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 003047 29 TLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGG 108 (854)
Q Consensus 29 ~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 108 (854)
..+..|..++..|+|++|++.|+++++.+|.++..-.. ++..-...+.+..+++..+++.+..
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~-----y~~~~~~~~g~~~~A~~~L~~ll~~------------ 176 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVE-----YWRLVAKLPAQRPEAINQLQRLNAD------------ 176 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHH-----HHHHHhhCCccHHHHHHHHHHHHHh------------
Confidence 45778888999999999999999999999988743211 1111111234555677777776631
Q ss_pred CCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCC---------
Q 003047 109 GNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPI--------- 179 (854)
Q Consensus 109 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~--------- 179 (854)
+|++..+++.+|.+++..|++++|+.+|+++...-...
T Consensus 177 ---------------------------------~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~ 223 (1157)
T PRK11447 177 ---------------------------------YPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYG 223 (1157)
T ss_pred ---------------------------------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHH
Confidence 46677899999999999999999999999986532100
Q ss_pred ------------------------chhh--HHH--------------HHHHHHHHHHHccCHHHHHHHHHHHHHhhhccc
Q 003047 180 ------------------------DETT--ALQ--------------ICLLLLDVALACHDAFRSADVLIYLEKAFSVGC 219 (854)
Q Consensus 180 ------------------------~e~~--~~~--------------~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~ 219 (854)
+... +.. ....++.+++..|++++|+ ..|++++.+.
T Consensus 224 ~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~---~~l~~aL~~~- 299 (1157)
T PRK11447 224 QIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAI---PELQQAVRAN- 299 (1157)
T ss_pred HHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHH---HHHHHHHHhC-
Confidence 0000 000 0013367788899999997 5678887664
Q ss_pred ccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhh---hhhhhhhhhhhhhhhhhccccCCCCC
Q 003047 220 VNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRT---LSEETLEDDTVLALSSLEISGQNLTR 296 (854)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (854)
++. ...+...+ .+... ..++.-.|...+ ...+....
T Consensus 300 ---P~~-------------------------------~~a~~~Lg-~~~~~~g~~~eA~~~l~~Al---~~~p~~~~--- 338 (1157)
T PRK11447 300 ---PKD-------------------------------SEALGALG-QAYSQQGDRARAVAQFEKAL---ALDPHSSN--- 338 (1157)
T ss_pred ---CCC-------------------------------HHHHHHHH-HHHHHcCCHHHHHHHHHHHH---HhCCCccc---
Confidence 111 11122222 22322 223333444443 11110000
Q ss_pred CCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHH
Q 003047 297 PVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKA 376 (854)
Q Consensus 297 ~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kA 376 (854)
.+. .... .......+.+..+.+++..|++++|++.+++++.++ |++..+++.+|.++...|++++|
T Consensus 339 --------~~~-~~~l---l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~--P~~~~a~~~Lg~~~~~~g~~~eA 404 (1157)
T PRK11447 339 --------RDK-WESL---LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD--NTDSYAVLGLGDVAMARKDYAAA 404 (1157)
T ss_pred --------hhH-HHHH---HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHH
Confidence 000 0000 000011123345778899999999999999999999 99999999999999999999999
Q ss_pred HHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh-cccCCccccccccCCccHHHHHHHHHHHHH
Q 003047 377 IKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSAS-LRKDKPLKLLTFSQDKSLLITYNCGLQYLA 455 (854)
Q Consensus 377 l~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~-l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~ 455 (854)
+++|+++++ .+|. +..++.+++.+|.. +++++|+.++++.....+. +.. ....-....+..+|.++..
T Consensus 405 ~~~y~~aL~-~~p~-~~~a~~~L~~l~~~-~~~~~A~~~l~~l~~~~~~~~~~--------~~~~l~~~~~~~~a~~~~~ 473 (1157)
T PRK11447 405 ERYYQQALR-MDPG-NTNAVRGLANLYRQ-QSPEKALAFIASLSASQRRSIDD--------IERSLQNDRLAQQAEALEN 473 (1157)
T ss_pred HHHHHHHHH-hCCC-CHHHHHHHHHHHHh-cCHHHHHHHHHhCCHHHHHHHHH--------HHHHhhhhHHHHHHHHHHH
Confidence 999999999 7884 57788889988854 5788888887664332110 000 0000112456678888888
Q ss_pred CCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCC
Q 003047 456 CGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDS 535 (854)
Q Consensus 456 ~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~ 535 (854)
.|++++|+.+|+++++++|+++.+++.+|.++...++. ++ ++ ..+ .+.+.+.+..+.. .+..
T Consensus 474 ~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~---~~---------A~-~~l----~~al~~~P~~~~~-~~a~ 535 (1157)
T PRK11447 474 QGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQR---SQ---------AD-ALM----RRLAQQKPNDPEQ-VYAY 535 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH---HH---------HH-HHH----HHHHHcCCCCHHH-HHHH
Confidence 88888888888888888888888888888888742221 11 00 000 0001111111000 0000
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccc
Q 003047 536 PEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGL 615 (854)
Q Consensus 536 ~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (854)
+ .........++|..+|+.+..-....... .+ ..++.. ......
T Consensus 536 --a------l~l~~~~~~~~Al~~l~~l~~~~~~~~~~----------~l---------------~~~l~~---~~~l~~ 579 (1157)
T PRK11447 536 --G------LYLSGSDRDRAALAHLNTLPRAQWNSNIQ----------EL---------------AQRLQS---DQVLET 579 (1157)
T ss_pred --H------HHHHhCCCHHHHHHHHHhCCchhcChhHH----------HH---------------HHHHhh---hHHHHH
Confidence 0 00000113455666665432111000000 00 000000 000000
Q ss_pred cc-cccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHH
Q 003047 616 GQ-VTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYI 693 (854)
Q Consensus 616 ~~-~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~ 693 (854)
+. +...|+..+.. +++. ..+. ...++..+|.++...|++.+|+.+++++++ .|+++.++.
T Consensus 580 a~~l~~~G~~~eA~-----~~l~-----------~~p~--~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~ 641 (1157)
T PRK11447 580 ANRLRDSGKEAEAE-----ALLR-----------QQPP--STRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARL 641 (1157)
T ss_pred HHHHHHCCCHHHHH-----HHHH-----------hCCC--CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 00 01122211110 0000 0001 113466789999999999999999999998 888999988
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCc
Q 003047 694 FLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKP 773 (854)
Q Consensus 694 ~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~ 773 (854)
.++.+|. ..|++++|+.+|+..+. .+ |.
T Consensus 642 ~la~~~~-----~~g~~~eA~~~l~~ll~--~~--------------------------------------p~------- 669 (1157)
T PRK11447 642 GLIEVDI-----AQGDLAAARAQLAKLPA--TA--------------------------------------ND------- 669 (1157)
T ss_pred HHHHHHH-----HCCCHHHHHHHHHHHhc--cC--------------------------------------CC-------
Confidence 8877554 68999999999998772 11 22
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHhc
Q 003047 774 EEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRST------EATLTAIYVDLMLGKSQEALAKLKYC 838 (854)
Q Consensus 774 ~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~------~a~~l~~y~~L~~G~~~eA~~~lk~~ 838 (854)
.+..+..+|.++..+|++++|.+++++++...|+.+ .++...+.++.+.|++++|+..+++.
T Consensus 670 ---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 670 ---SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred ---ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 356678899999999999999999999999876553 34445678888999999999999883
No 9
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=3.6e-24 Score=264.50 Aligned_cols=260 Identities=12% Similarity=0.006 Sum_probs=168.6
Q ss_pred cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeecccccccee
Q 003047 442 SLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYL 521 (854)
Q Consensus 442 ~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l 521 (854)
...+|+++|.++.. +++++|+.+|.+++...|++ |.+++..+... ..+..++ ++ ..++++
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~---~~~L~lA~al~-~~Gr~ee---------Ai------~~~rka 535 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDA---WQHRAVAYQAY-QVEDYAT---------AL------AAWQKI 535 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCch---HHHHHHHHHHH-HCCCHHH---------HH------HHHHHH
Confidence 67899999999998 89999999999999999985 34554444321 2221111 00 001111
Q ss_pred eeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccc
Q 003047 522 VMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNH 601 (854)
Q Consensus 522 ~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (854)
...+.... .... -| ........++.|..+|++|+.+.|...... ..+...
T Consensus 536 ~~~~p~~~-a~~~--la------~all~~Gd~~eA~~~l~qAL~l~P~~~~l~----~~La~~----------------- 585 (987)
T PRK09782 536 SLHDMSNE-DLLA--AA------NTAQAAGNGAARDRWLQQAEQRGLGDNALY----WWLHAQ----------------- 585 (987)
T ss_pred hccCCCcH-HHHH--HH------HHHHHCCCHHHHHHHHHHHHhcCCccHHHH----HHHHHH-----------------
Confidence 11110000 0000 00 011123357889999999999887754210 000000
Q ss_pred cccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003047 602 KSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARS 681 (854)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~ 681 (854)
....|+..++.. ..++++. +.|. ...+.++|.++..+|++.+|+.++++
T Consensus 586 ----------------l~~~Gr~~eAl~-~~~~AL~--l~P~------------~~a~~~LA~~l~~lG~~deA~~~l~~ 634 (987)
T PRK09782 586 ----------------RYIPGQPELALN-DLTRSLN--IAPS------------ANAYVARATIYRQRHNVPAAVSDLRA 634 (987)
T ss_pred ----------------HHhCCCHHHHHH-HHHHHHH--hCCC------------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 000133222111 1111111 0111 24567888899999999999999999
Q ss_pred HHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCC
Q 003047 682 LLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNP 760 (854)
Q Consensus 682 lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 760 (854)
++. .|+++.++..+|. +|+.+|++++|+.+|++++. .+
T Consensus 635 AL~l~Pd~~~a~~nLG~-----aL~~~G~~eeAi~~l~~AL~--l~---------------------------------- 673 (987)
T PRK09782 635 ALELEPNNSNYQAALGY-----ALWDSGDIAQSREMLERAHK--GL---------------------------------- 673 (987)
T ss_pred HHHhCCCCHHHHHHHHH-----HHHHCCCHHHHHHHHHHHHH--hC----------------------------------
Confidence 887 7888888877776 55678999999999999883 21
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003047 761 SPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKY 837 (854)
Q Consensus 761 ~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~ 837 (854)
|. .+.+++|||.++..+|++++|++++++++++.|+.+.+.+..+.++.+..+++.|.+.+++
T Consensus 674 ----P~----------~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r 736 (987)
T PRK09782 674 ----PD----------DPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGR 736 (987)
T ss_pred ----CC----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 33 5778889999999999999999999999999999988888999999999999999988877
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=2.1e-22 Score=241.59 Aligned_cols=266 Identities=15% Similarity=0.111 Sum_probs=220.2
Q ss_pred hcCHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHH
Q 003047 334 TRNLKHAKREVKLAMNIA-RGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTS 412 (854)
Q Consensus 334 ~~~~~~A~~elk~al~~~-~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eA 412 (854)
.+.+++|++.++++++.. .+|+...++..+|.+++.+|++++|+..|++++. .+|. ....|.++|.+|..+|++++|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~-l~P~-~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE-LDPR-VTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCC-cHHHHHHHHHHHHHCCCHHHH
Confidence 467889999999999863 1288889999999999999999999999999999 7884 577899999999999999999
Q ss_pred HHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 003047 413 SVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALE 492 (854)
Q Consensus 413 i~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~ 492 (854)
+.+|++++.. .+.+..+++++|.+++..|++++|+.+|++++.++|++..+|.++|.++. +
T Consensus 385 ~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~---~ 445 (615)
T TIGR00990 385 EEDFDKALKL----------------NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY---K 445 (615)
T ss_pred HHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH---H
Confidence 9999999998 34567899999999999999999999999999999999999999998887 2
Q ss_pred ccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcc
Q 003047 493 KGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDL 572 (854)
Q Consensus 493 ~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~ 572 (854)
.+ .++.|+..|++++.+.|....
T Consensus 446 ~g---------------------------------------------------------~~~eA~~~~~~al~~~P~~~~ 468 (615)
T TIGR00990 446 EG---------------------------------------------------------SIASSMATFRRCKKNFPEAPD 468 (615)
T ss_pred CC---------------------------------------------------------CHHHHHHHHHHHHHhCCCChH
Confidence 20 247799999999998887431
Q ss_pred cccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhH
Q 003047 573 NYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQ 652 (854)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 652 (854)
T Consensus 469 -------------------------------------------------------------------------------- 468 (615)
T TIGR00990 469 -------------------------------------------------------------------------------- 468 (615)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHH-HHHHHHHHHh-cCCHHHHHHHHHhhhcCCCCCCC
Q 003047 653 MIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLG-HIYAAEALCL-LNRPKEAAEHFSMYLSGGDNFDL 729 (854)
Q Consensus 653 ~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la-~lY~aeAl~~-lgr~~eAl~~l~~~l~~~~~~~~ 729 (854)
++..+|.++..+|++.+|+..+++++. .|.....+..+. .+..+.++.. .|++++|+.++++++. .+
T Consensus 469 -----~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~--l~--- 538 (615)
T TIGR00990 469 -----VYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI--ID--- 538 (615)
T ss_pred -----HHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cC---
Confidence 245668899999999999999999998 555443333222 2222333333 6999999999999993 22
Q ss_pred CCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003047 730 PFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILP 809 (854)
Q Consensus 730 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P 809 (854)
|. ...++.+||.++..+|++++|++.|++++++.+
T Consensus 539 -----------------------------------p~----------~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 539 -----------------------------------PE----------CDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred -----------------------------------CC----------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 22 355788899999999999999999999999987
Q ss_pred CCH
Q 003047 810 RST 812 (854)
Q Consensus 810 ~~~ 812 (854)
...
T Consensus 574 ~~~ 576 (615)
T TIGR00990 574 TEG 576 (615)
T ss_pred cHH
Confidence 653
No 11
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.92 E-value=9.6e-22 Score=229.67 Aligned_cols=569 Identities=16% Similarity=0.116 Sum_probs=350.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhccc
Q 003047 28 ATLAKEAALYFQSRKFDECLDLLKQLLDKKPD---DPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQ 104 (854)
Q Consensus 28 ~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~---~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 104 (854)
-.|+.+|-..|++|+|-.|+.+|+++|.++|. |+.|-. | +++.. +....+ ++..+.++++. +
T Consensus 165 l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgi--g--~Cf~k-l~~~~~---a~~a~~ralqL-------d 229 (1018)
T KOG2002|consen 165 LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGI--G--HCFWK-LGMSEK---ALLAFERALQL-------D 229 (1018)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchh--h--hHHHh-ccchhh---HHHHHHHHHhc-------C
Confidence 35889999999999999999999999998777 443321 2 11111 112222 44444444421 1
Q ss_pred CCCC-CCCCCccc------CCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccC
Q 003047 105 TEGG-GNIGSKVG------LGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIE 177 (854)
Q Consensus 105 ~~~~-~~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~ 177 (854)
|... .-+|..+- ..+...|+..-+.+ ... +++|++++.-+|..||..|+|..+..+.+-++++.
T Consensus 230 p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~a-------y~~-n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t- 300 (1018)
T KOG2002|consen 230 PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRA-------YKE-NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT- 300 (1018)
T ss_pred hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHH-------Hhh-cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh-
Confidence 1100 00000000 01111111110000 122 67789999999999999999999999999999864
Q ss_pred CCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhh
Q 003047 178 PIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLA 257 (854)
Q Consensus 178 ~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (854)
..+.+....|+.++-.|..+|+|++|- .||.+++... ++. ...+
T Consensus 301 -~~~~~~aes~Y~~gRs~Ha~Gd~ekA~---~yY~~s~k~~----~d~----------------------------~~l~ 344 (1018)
T KOG2002|consen 301 -ENKSIKAESFYQLGRSYHAQGDFEKAF---KYYMESLKAD----NDN----------------------------FVLP 344 (1018)
T ss_pred -hhhHHHHHHHHHHHHHHHhhccHHHHH---HHHHHHHccC----CCC----------------------------cccc
Confidence 334445567999999999999999997 6788777553 110 0111
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhc--
Q 003047 258 ATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTR-- 335 (854)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~-- 335 (854)
-+...-..+.-..+-+...-|+.++. . . ++.-+ ....-+.+|...+
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k----~---~---------------------p~~~e----tm~iLG~Lya~~~~~ 392 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLK----Q---L---------------------PNNYE----TMKILGCLYAHSAKK 392 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHH----h---C---------------------cchHH----HHHHHHhHHHhhhhh
Confidence 11111112222334466677777762 1 0 00011 1112244555443
Q ss_pred --CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc----cCCCccHHHHHHHHHHHHHcCCH
Q 003047 336 --NLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNR----TEMGISSMFNNNLGCIYYQLAKY 409 (854)
Q Consensus 336 --~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~----~dp~~~a~~~nnLG~iy~~~g~~ 409 (854)
..++|..-+.+++... |.+..+|+.+|.++....-+ .++.+|..++.. ..+ .++.++||+|+.|+.+|.+
T Consensus 393 ~~~~d~a~~~l~K~~~~~--~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~~g~~ 468 (1018)
T KOG2002|consen 393 QEKRDKASNVLGKVLEQT--PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQ-IPPEVLNNVASLHFRLGNI 468 (1018)
T ss_pred hHHHHHHHHHHHHHHhcc--cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHHhcCh
Confidence 6688999999999999 99999999999988765544 448888888852 223 4688999999999999999
Q ss_pred HHHHHHHHHHHHhchh-cccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 410 HTSSVFLSKALSNSAS-LRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 410 ~eAi~~f~kAL~~~~~-l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
.+|...|.+|+..... .....+ .......-||+|.++...++++.|.+.|..++...|....++.+|| |+
T Consensus 469 ~~A~~~f~~A~~~~~~~~n~de~-------~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~--~m 539 (1018)
T KOG2002|consen 469 EKALEHFKSALGKLLEVANKDEG-------KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLG--CM 539 (1018)
T ss_pred HHHHHHHHHHhhhhhhhcCcccc-------ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhh--HH
Confidence 9999999999997331 111000 1123457899999999999999999999999999999999999999 33
Q ss_pred HHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcC
Q 003047 489 MALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLN 568 (854)
Q Consensus 489 ~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p 568 (854)
...+. .+.+|...++.+|..+.
T Consensus 540 a~~k~----------------------------------------------------------~~~ea~~~lk~~l~~d~ 561 (1018)
T KOG2002|consen 540 ARDKN----------------------------------------------------------NLYEASLLLKDALNIDS 561 (1018)
T ss_pred HHhcc----------------------------------------------------------CcHHHHHHHHHHHhccc
Confidence 11111 11223444444444443
Q ss_pred CCcccccccC-CCCCCcccccccccccccccccccccccc-cccccccccccc-----cCCCcccccCCchhHHHhhhcc
Q 003047 569 YPDLNYSKFG-LPSNSSVEESESSEGASSKNLNHKSLSSL-DSKISVGLGQVT-----ANGDAKDQKGGTSLEVIQNSLS 641 (854)
Q Consensus 569 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~gd~~~~~~~~~~~~~~~~i~ 641 (854)
..+.+++-.+ +++.-.... .+.--+.+++.. +.+. +.=...++|.+. ..-+.++..-.-..+ ++.
T Consensus 562 ~np~arsl~G~~~l~k~~~~---~a~k~f~~i~~~-~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~K----Alq 633 (1018)
T KOG2002|consen 562 SNPNARSLLGNLHLKKSEWK---PAKKKFETILKK-TSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEK----ALQ 633 (1018)
T ss_pred CCcHHHHHHHHHHHhhhhhc---ccccHHHHHHhh-hccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHH----HHH
Confidence 3333222111 111000000 000000000000 0000 000111333211 001101000001112 223
Q ss_pred chhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 003047 642 YYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMY 720 (854)
Q Consensus 642 ~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~ 720 (854)
.+..+-...+.+|.+ -..+|-|+-.-|++.+|+.++.++.+ ..+++++|.++||+|. .+|+|-.|++.|+.+
T Consensus 634 ~y~kvL~~dpkN~yA--ANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~-----e~~qy~~AIqmYe~~ 706 (1018)
T KOG2002|consen 634 LYGKVLRNDPKNMYA--ANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYV-----EQGQYRLAIQMYENC 706 (1018)
T ss_pred HHHHHHhcCcchhhh--ccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHH-----HHHHHHHHHHHHHHH
Confidence 333333334455554 45678899999999999999999998 4558999999999887 479999999999999
Q ss_pred hcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHH
Q 003047 721 LSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHF 800 (854)
Q Consensus 721 l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~ 800 (854)
++. | ++.+ +..+..-||.++...|.|.+|.+.
T Consensus 707 lkk-----------------------f---------------------~~~~----~~~vl~~Lara~y~~~~~~eak~~ 738 (1018)
T KOG2002|consen 707 LKK-----------------------F---------------------YKKN----RSEVLHYLARAWYEAGKLQEAKEA 738 (1018)
T ss_pred HHH-----------------------h---------------------cccC----CHHHHHHHHHHHHHhhhHHHHHHH
Confidence 942 0 0111 355556699999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHH
Q 003047 801 VTQALSILPRSTEATLTAIYVD 822 (854)
Q Consensus 801 ~~~Al~~~P~~~~a~~l~~y~~ 822 (854)
+-.|+.+.|.++.+.++.+.+.
T Consensus 739 ll~a~~~~p~~~~v~FN~a~v~ 760 (1018)
T KOG2002|consen 739 LLKARHLAPSNTSVKFNLALVL 760 (1018)
T ss_pred HHHHHHhCCccchHHhHHHHHH
Confidence 9999999999998888888885
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=6.1e-21 Score=235.98 Aligned_cols=116 Identities=13% Similarity=0.059 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhh
Q 003047 658 LLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDC 736 (854)
Q Consensus 658 ~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~ 736 (854)
++.++|+++...|++.+|+.+++++++ .|.++.++.++|.+| ..+|++++|+.+|++++. .+
T Consensus 645 a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al-----~~lGd~~eA~~~l~~Al~--l~---------- 707 (987)
T PRK09782 645 YQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVN-----QRLDDMAATQHYARLVID--DI---------- 707 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-----HHCCCHHHHHHHHHHHHh--cC----------
Confidence 477899999999999999999999998 899999999999855 579999999999999993 32
Q ss_pred hhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 003047 737 EQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATL 816 (854)
Q Consensus 737 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~ 816 (854)
|. .+....-.|.+...+.+++.|.+.+.++....|+.. +-.
T Consensus 708 ----------------------------P~----------~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~-a~~ 748 (987)
T PRK09782 708 ----------------------------DN----------QALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS-IGL 748 (987)
T ss_pred ----------------------------CC----------CchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch-hcc
Confidence 32 466677899999999999999999999999999987 555
Q ss_pred HHHHHHHhcCCHH
Q 003047 817 TAIYVDLMLGKSQ 829 (854)
Q Consensus 817 l~~y~~L~~G~~~ 829 (854)
..+-+++..+++-
T Consensus 749 ~~g~~~~~~~~~~ 761 (987)
T PRK09782 749 RSGAMSTANNNVG 761 (987)
T ss_pred ccchHhhhccccc
Confidence 5555666666653
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=5.2e-21 Score=230.58 Aligned_cols=281 Identities=14% Similarity=0.083 Sum_probs=230.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 003047 29 TLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGG 108 (854)
Q Consensus 29 ~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 108 (854)
.+-.-+..++++|++++|+.+++.++...|.++.++++++++....+ ++.+++..+.+.+..
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g------~~~~A~~~l~~~l~~------------ 105 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASS------QPDAVLQVVNKLLAV------------ 105 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcC------CHHHHHHHHHHHHHh------------
Confidence 35556788899999999999999999999999999999999988644 344577777776631
Q ss_pred CCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHH
Q 003047 109 GNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQIC 188 (854)
Q Consensus 109 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~ 188 (854)
+|+++.+++++|.++...|++++|++.|+++++..+...+ +.
T Consensus 106 ---------------------------------~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~-----a~ 147 (656)
T PRK15174 106 ---------------------------------NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQ-----IF 147 (656)
T ss_pred ---------------------------------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-----HH
Confidence 5667889999999999999999999999999996444322 57
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhh
Q 003047 189 LLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALS 268 (854)
Q Consensus 189 l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (854)
..++.+|...|++++|+..+ ++..... ++.
T Consensus 148 ~~la~~l~~~g~~~eA~~~~---~~~~~~~----P~~------------------------------------------- 177 (656)
T PRK15174 148 ALHLRTLVLMDKELQAISLA---RTQAQEV----PPR------------------------------------------- 177 (656)
T ss_pred HHHHHHHHHCCChHHHHHHH---HHHHHhC----CCC-------------------------------------------
Confidence 77899999999999998644 4443322 100
Q ss_pred hhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 003047 269 RTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAM 348 (854)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al 348 (854)
.+ ... ....++..|++++|...+++++
T Consensus 178 ------------------------------------------------~~----a~~-~~~~l~~~g~~~eA~~~~~~~l 204 (656)
T PRK15174 178 ------------------------------------------------GD----MIA-TCLSFLNKSRLPEDHDLARALL 204 (656)
T ss_pred ------------------------------------------------HH----HHH-HHHHHHHcCCHHHHHHHHHHHH
Confidence 00 000 0123667899999999999999
Q ss_pred HhcCCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhc
Q 003047 349 NIARGK-DSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHT----SSVFLSKALSNS 423 (854)
Q Consensus 349 ~~~~~P-~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~e----Ai~~f~kAL~~~ 423 (854)
..+ | ++......++.++...|++++|+..|.+++. .+|+ .+.+++++|.+|..+|++++ |+.+|++++..
T Consensus 205 ~~~--~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~-~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l- 279 (656)
T PRK15174 205 PFF--ALERQESAGLAVDTLCAVGKYQEAIQTGESALA-RGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF- 279 (656)
T ss_pred hcC--CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh-
Confidence 987 6 4455556778999999999999999999999 7885 57899999999999999986 89999999998
Q ss_pred hhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 424 ASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 424 ~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
.|....++.++|.++...|++++|+.+|++++.++|+++.+|..+|.++.
T Consensus 280 ---------------~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~ 329 (656)
T PRK15174 280 ---------------NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALR 329 (656)
T ss_pred ---------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999998877
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=4.3e-21 Score=231.30 Aligned_cols=341 Identities=13% Similarity=0.003 Sum_probs=275.3
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCc
Q 003047 149 KLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSM 228 (854)
Q Consensus 149 ~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~ 228 (854)
..-.+.-..+.|++++|+..++.++...+.-.+ +..+++......|++++|+. .|++++.+. |+.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-----~l~~l~~~~l~~g~~~~A~~---~l~~~l~~~----P~~--- 109 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRD-----LLRRWVISPLASSQPDAVLQ---VVNKLLAVN----VCQ--- 109 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh-----HHHHHhhhHhhcCCHHHHHH---HHHHHHHhC----CCC---
Confidence 334477789999999999999999997665444 46777788888999999984 667776553 111
Q ss_pred ccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhh
Q 003047 229 GQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRT 308 (854)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 308 (854)
T Consensus 110 -------------------------------------------------------------------------------- 109 (656)
T PRK15174 110 -------------------------------------------------------------------------------- 109 (656)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccC
Q 003047 309 LVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTE 388 (854)
Q Consensus 309 ~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~d 388 (854)
...++..+.+|..+|++++|+..+++++.++ |+++.++..+|.++...|++++|+..+.+++. ..
T Consensus 110 ------------~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~-~~ 174 (656)
T PRK15174 110 ------------PEDVLLVASVLLKSKQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQAQ-EV 174 (656)
T ss_pred ------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH-hC
Confidence 0022335778889999999999999999999 99999999999999999999999999999988 67
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHH
Q 003047 389 MGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQK 468 (854)
Q Consensus 389 p~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~k 468 (854)
|. .+.++..++ .+...|++++|+..|++++...+ .........+|.++...|++++|+..|++
T Consensus 175 P~-~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~---------------~~~~~~~~~l~~~l~~~g~~~eA~~~~~~ 237 (656)
T PRK15174 175 PP-RGDMIATCL-SFLNKSRLPEDHDLARALLPFFA---------------LERQESAGLAVDTLCAVGKYQEAIQTGES 237 (656)
T ss_pred CC-CHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCC---------------CcchhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 74 466666554 58899999999999999988621 11223445678999999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCC
Q 003047 469 SSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQ 548 (854)
Q Consensus 469 AL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~ 548 (854)
++.+.|+++.+|+.||.++...++. ++
T Consensus 238 al~~~p~~~~~~~~Lg~~l~~~G~~---~e-------------------------------------------------- 264 (656)
T PRK15174 238 ALARGLDGAALRRSLGLAYYQSGRS---RE-------------------------------------------------- 264 (656)
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCCc---hh--------------------------------------------------
Confidence 9999999999999999998831110 00
Q ss_pred CCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCccccc
Q 003047 549 PKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQK 628 (854)
Q Consensus 549 ~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~ 628 (854)
-...|..+|++|+.+.|+...
T Consensus 265 ---A~~~A~~~~~~Al~l~P~~~~-------------------------------------------------------- 285 (656)
T PRK15174 265 ---AKLQAAEHWRHALQFNSDNVR-------------------------------------------------------- 285 (656)
T ss_pred ---hHHHHHHHHHHHHhhCCCCHH--------------------------------------------------------
Confidence 013599999999999998431
Q ss_pred CCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhc
Q 003047 629 GGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLL 707 (854)
Q Consensus 629 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~l 707 (854)
++..+|.++..+|++.+|+.++++++. .|+++.++..+|. ++..+
T Consensus 286 -----------------------------a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~-----~l~~~ 331 (656)
T PRK15174 286 -----------------------------IVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYAR-----ALRQV 331 (656)
T ss_pred -----------------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-----HHHHC
Confidence 255779999999999999999999998 7888888877776 45579
Q ss_pred CCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHH
Q 003047 708 NRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAM 787 (854)
Q Consensus 708 gr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~ 787 (854)
|++++|+.+|++.+. .+ |. .+..+..+|.+
T Consensus 332 G~~~eA~~~l~~al~--~~--------------------------------------P~----------~~~~~~~~a~a 361 (656)
T PRK15174 332 GQYTAASDEFVQLAR--EK--------------------------------------GV----------TSKWNRYAAAA 361 (656)
T ss_pred CCHHHHHHHHHHHHH--hC--------------------------------------cc----------chHHHHHHHHH
Confidence 999999999999882 11 32 34556668999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCH
Q 003047 788 FAMQGEFERAHHFVTQALSILPRST 812 (854)
Q Consensus 788 ~~~~g~~e~A~~~~~~Al~~~P~~~ 812 (854)
+...|++++|+++|++++++.|++.
T Consensus 362 l~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 362 LLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhChhhc
Confidence 9999999999999999999999874
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.90 E-value=3.2e-20 Score=227.80 Aligned_cols=395 Identities=13% Similarity=-0.014 Sum_probs=288.3
Q ss_pred hhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccC
Q 003047 143 FDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQ 222 (854)
Q Consensus 143 ~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~ 222 (854)
+..+..+.++|.++..+|++++|+++|+++++..+...+ +.+.++.++...|++++|+. .+++++...
T Consensus 46 ~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~-----a~~~la~~l~~~g~~~eA~~---~l~~~l~~~---- 113 (765)
T PRK10049 46 QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDD-----YQRGLILTLADAGQYDEALV---KAKQLVSGA---- 113 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHCCCHHHHHH---HHHHHHHhC----
Confidence 345667999999999999999999999999995443333 35678889999999999984 567666442
Q ss_pred CCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCcc
Q 003047 223 VDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSS 302 (854)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (854)
++.
T Consensus 114 P~~----------------------------------------------------------------------------- 116 (765)
T PRK10049 114 PDK----------------------------------------------------------------------------- 116 (765)
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 110
Q ss_pred chhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 003047 303 NELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLA 382 (854)
Q Consensus 303 ~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~k 382 (854)
. . .+..+.++..+|+.++|+..+++++.+. |+++.+++.+|.++...+..++|++.+++
T Consensus 117 --------------~----~-~~~la~~l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 117 --------------A----N-LLALAYVYKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred --------------H----H-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 0 0 2224778888999999999999999999 99999999999999999999999999998
Q ss_pred hhhccCCCc-c---HHHHHHHHHHHH-----HcCCH---HHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHH
Q 003047 383 LSNRTEMGI-S---SMFNNNLGCIYY-----QLAKY---HTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCG 450 (854)
Q Consensus 383 al~~~dp~~-~---a~~~nnLG~iy~-----~~g~~---~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG 450 (854)
+.. .|.. . ......+..++. ..+++ ++|+..|+++++..+..... .+....+.....
T Consensus 176 ~~~--~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~---------~~~~~~a~~d~l 244 (765)
T PRK10049 176 ANL--TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDA---------TADYQRARIDRL 244 (765)
T ss_pred CCC--CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCcc---------chHHHHHHHHHH
Confidence 775 3321 0 001111222222 22345 78899999988763211100 011123333323
Q ss_pred HHHHHCCCcHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCC
Q 003047 451 LQYLACGKPVLAARCFQKSSLVFY---KQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGF 527 (854)
Q Consensus 451 ~~ll~~Gk~eeAl~~y~kAL~l~P---~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~ 527 (854)
..++..|++++|+..|+++++..| +++..| +|..++ ..+
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~--la~~yl---~~g--------------------------------- 286 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPWAQRW--VASAYL---KLH--------------------------------- 286 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHH--HHHHHH---hcC---------------------------------
Confidence 455788999999999999999864 444445 466555 210
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccc
Q 003047 528 RKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSL 607 (854)
Q Consensus 528 ~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (854)
..+.|+.+|++++...|......
T Consensus 287 ------------------------~~e~A~~~l~~~l~~~p~~~~~~--------------------------------- 309 (765)
T PRK10049 287 ------------------------QPEKAQSILTELFYHPETIADLS--------------------------------- 309 (765)
T ss_pred ------------------------CcHHHHHHHHHHhhcCCCCCCCC---------------------------------
Confidence 13679999999887665531100
Q ss_pred cccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CC
Q 003047 608 DSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LP 686 (854)
Q Consensus 608 ~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p 686 (854)
. .....|++++++.|++.+|+..++++.. .|
T Consensus 310 ----------------------------~--------------------~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P 341 (765)
T PRK10049 310 ----------------------------D--------------------EELADLFYSLLESENYPGALTVTAHTINNSP 341 (765)
T ss_pred ----------------------------h--------------------HHHHHHHHHHHhcccHHHHHHHHHHHhhcCC
Confidence 0 1134567788999999999999999997 45
Q ss_pred CCh----------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCC
Q 003047 687 DCS----------RIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAA 756 (854)
Q Consensus 687 ~~~----------~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 756 (854)
+.. ......+.+..+.++...|++++|+++|++++. .
T Consensus 342 ~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~------------------------------- 388 (765)
T PRK10049 342 PFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--N------------------------------- 388 (765)
T ss_pred ceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h-------------------------------
Confidence 321 111223344556677789999999999999993 1
Q ss_pred CCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003047 757 AKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLK 836 (854)
Q Consensus 757 ~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk 836 (854)
.|. ++.+++++|.++..+|++++|++++++++++.|+++.+...++++.+++|++++|..+++
T Consensus 389 -------~P~----------n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~ 451 (765)
T PRK10049 389 -------APG----------NQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTD 451 (765)
T ss_pred -------CCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 143 578899999999999999999999999999999999999999999999999999999999
Q ss_pred h-cCCCcccccccccc
Q 003047 837 Y-CNHVRFLPSGLQLS 851 (854)
Q Consensus 837 ~-~~~~~~~~~~~~~~ 851 (854)
+ ....|.+|...+|.
T Consensus 452 ~ll~~~Pd~~~~~~~~ 467 (765)
T PRK10049 452 DVVAREPQDPGVQRLA 467 (765)
T ss_pred HHHHhCCCCHHHHHHH
Confidence 9 88889888776653
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=3.4e-18 Score=209.92 Aligned_cols=420 Identities=13% Similarity=-0.007 Sum_probs=298.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcc
Q 003047 36 LYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGNIGSKV 115 (854)
Q Consensus 36 ~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 115 (854)
...-.|++++|++.|.++...+|..+.++.++|.++...+ ++.+++..+.+.+..
T Consensus 24 ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g------~~~~A~~~~~~al~~------------------- 78 (765)
T PRK10049 24 IALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLK------QWQNSLTLWQKALSL------------------- 78 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHh-------------------
Confidence 3447899999999999999999999999999998876443 455677777777731
Q ss_pred cCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHH
Q 003047 116 GLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVA 195 (854)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy 195 (854)
+|+++.+++++|.++...|++++|+.+++++++..+...+ .+.++.+|
T Consensus 79 --------------------------~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~------~~~la~~l 126 (765)
T PRK10049 79 --------------------------EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN------LLALAYVY 126 (765)
T ss_pred --------------------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHH
Confidence 4667778999999999999999999999999995333222 56678999
Q ss_pred HHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhh
Q 003047 196 LACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEET 275 (854)
Q Consensus 196 ~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (854)
...|++++|+ ..+++++.+. ++.
T Consensus 127 ~~~g~~~~Al---~~l~~al~~~----P~~-------------------------------------------------- 149 (765)
T PRK10049 127 KRAGRHWDEL---RAMTQALPRA----PQT-------------------------------------------------- 149 (765)
T ss_pred HHCCCHHHHH---HHHHHHHHhC----CCC--------------------------------------------------
Confidence 9999999998 5678887664 111
Q ss_pred hhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCC
Q 003047 276 LEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKD 355 (854)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~ 355 (854)
....+..+.++...+..++|++.++++.. . |+
T Consensus 150 ---------------------------------------------~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~--p~ 181 (765)
T PRK10049 150 ---------------------------------------------QQYPTEYVQALRNNRLSAPALGAIDDANL-T--PA 181 (765)
T ss_pred ---------------------------------------------HHHHHHHHHHHHHCCChHHHHHHHHhCCC-C--HH
Confidence 00122245666777888888888887665 4 54
Q ss_pred CHH-----HHHHHHHHHH-----HhcCH---HHHHHHHHHhhhc--cCCCccH---HHHHH-HHHHHHHcCCHHHHHHHH
Q 003047 356 SSL-----ALFLKSQLEY-----ARRNH---RKAIKLLLALSNR--TEMGISS---MFNNN-LGCIYYQLAKYHTSSVFL 416 (854)
Q Consensus 356 ~~~-----a~~lla~ly~-----~~g~~---~kAl~~l~kal~~--~dp~~~a---~~~nn-LG~iy~~~g~~~eAi~~f 416 (854)
... ....+..+++ ..+++ ++|++.|+++++. .+|...+ .+... +|.+ ...|++++|+..|
T Consensus 182 ~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L-l~~g~~~eA~~~~ 260 (765)
T PRK10049 182 EKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL-LARDRYKDVISEY 260 (765)
T ss_pred HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH-HHhhhHHHHHHHH
Confidence 311 1122222222 23345 8899999998852 2342211 12222 4544 5779999999999
Q ss_pred HHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHHHh
Q 003047 417 SKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQP----LLWLRLAECCLMALE 492 (854)
Q Consensus 417 ~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~----~aw~~La~~~i~~~~ 492 (854)
+++++..+. .|.. +...+|.+|+.+|++++|+.+|++++...|.++ ..+..|+..+. .
T Consensus 261 ~~ll~~~~~-------------~P~~--a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~---~ 322 (765)
T PRK10049 261 QRLKAEGQI-------------IPPW--AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL---E 322 (765)
T ss_pred HHhhccCCC-------------CCHH--HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH---h
Confidence 998876100 1222 233359999999999999999999999888763 34444444433 1
Q ss_pred ccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcc
Q 003047 493 KGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDL 572 (854)
Q Consensus 493 ~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~ 572 (854)
. ..+++|...|++++...|....
T Consensus 323 ~---------------------------------------------------------g~~~eA~~~l~~~~~~~P~~~~ 345 (765)
T PRK10049 323 S---------------------------------------------------------ENYPGALTVTAHTINNSPPFLR 345 (765)
T ss_pred c---------------------------------------------------------ccHHHHHHHHHHHhhcCCceEe
Confidence 1 0247799999999988887432
Q ss_pred cccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhH
Q 003047 573 NYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQ 652 (854)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 652 (854)
.. . .. ... ++
T Consensus 346 ~~-----~---~~-----------------------------------~~~---------------------------p~ 355 (765)
T PRK10049 346 LY-----G---SP-----------------------------------TSI---------------------------PN 355 (765)
T ss_pred ec-----C---CC-----------------------------------CCC---------------------------CC
Confidence 10 0 00 000 00
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCC
Q 003047 653 MIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPF 731 (854)
Q Consensus 653 ~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~ 731 (854)
.....++..++.++...|++.+|+..+++++. .|+++..+..+|.+|. ..|++++|+..|++++. .+
T Consensus 356 ~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~-----~~g~~~~A~~~l~~al~--l~----- 423 (765)
T PRK10049 356 DDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ-----ARGWPRAAENELKKAEV--LE----- 423 (765)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHh--hC-----
Confidence 01112355678899999999999999999997 8999999988887665 68999999999999993 21
Q ss_pred CchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003047 732 SGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRS 811 (854)
Q Consensus 732 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~ 811 (854)
|. +..+++.+|.++..+|++++|++.++++++..|++
T Consensus 424 ---------------------------------Pd----------~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~ 460 (765)
T PRK10049 424 ---------------------------------PR----------NINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQD 460 (765)
T ss_pred ---------------------------------CC----------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 33 46788999999999999999999999999999999
Q ss_pred HHHHHHH
Q 003047 812 TEATLTA 818 (854)
Q Consensus 812 ~~a~~l~ 818 (854)
+.+..+.
T Consensus 461 ~~~~~~~ 467 (765)
T PRK10049 461 PGVQRLA 467 (765)
T ss_pred HHHHHHH
Confidence 8655543
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=1.4e-18 Score=196.10 Aligned_cols=294 Identities=15% Similarity=0.061 Sum_probs=228.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcc
Q 003047 24 LSVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGE 103 (854)
Q Consensus 24 ~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 103 (854)
.......+..|+.+...|++++|+..|+++++.+|+++.+++.+|.+++..++ +.+++..+.+.+.
T Consensus 32 ~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~------~~~A~~~~~~~l~-------- 97 (389)
T PRK11788 32 SNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGE------VDRAIRIHQNLLS-------- 97 (389)
T ss_pred hhhccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCc------HHHHHHHHHHHhc--------
Confidence 44566778889999999999999999999999999999999999988775543 3345555544441
Q ss_pred cCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhh
Q 003047 104 QTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETT 183 (854)
Q Consensus 104 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~ 183 (854)
.++ ..+......++++|.+|...|+|++|+++|+++++. .+..
T Consensus 98 ~~~---------------------------------~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~-~~~~--- 140 (389)
T PRK11788 98 RPD---------------------------------LTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE-GDFA--- 140 (389)
T ss_pred CCC---------------------------------CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-Ccch---
Confidence 111 012234567889999999999999999999999884 2221
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhh
Q 003047 184 ALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNAS 263 (854)
Q Consensus 184 ~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (854)
..++..++.+|...|++++|++. +++.+... +.. . ..
T Consensus 141 -~~~~~~la~~~~~~g~~~~A~~~---~~~~~~~~----~~~--------------------~--------~~------- 177 (389)
T PRK11788 141 -EGALQQLLEIYQQEKDWQKAIDV---AERLEKLG----GDS--------------------L--------RV------- 177 (389)
T ss_pred -HHHHHHHHHHHHHhchHHHHHHH---HHHHHHhc----CCc--------------------c--------hH-------
Confidence 23577788999999999999854 45544322 000 0 00
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 003047 264 ENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKRE 343 (854)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~e 343 (854)
....+....+.+|..+|++++|++.
T Consensus 178 -------------------------------------------------------~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 178 -------------------------------------------------------EIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred -------------------------------------------------------HHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 0000122346678889999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 003047 344 VKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNS 423 (854)
Q Consensus 344 lk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~ 423 (854)
++++++.. |++..+++.+|.++...|++++|+++|++++. .+|.....+++.++.+|...|++++|+.+|++++...
T Consensus 203 ~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 203 LKKALAAD--PQCVRASILLGDLALAQGDYAAAIEALERVEE-QDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHhHC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999 99999999999999999999999999999998 5675445678889999999999999999999999872
Q ss_pred hhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 003047 424 ASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAEC 486 (854)
Q Consensus 424 ~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~ 486 (854)
+ +...+..+|..+...|++++|+..|++++..+|+++.++..++..
T Consensus 280 ----------------p-~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~ 325 (389)
T PRK11788 280 ----------------P-GADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYH 325 (389)
T ss_pred ----------------C-CchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHh
Confidence 2 224457899999999999999999999999999988665444433
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=3e-18 Score=193.39 Aligned_cols=306 Identities=16% Similarity=0.069 Sum_probs=240.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCC---ccHHHHH
Q 003047 321 LKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMG---ISSMFNN 397 (854)
Q Consensus 321 ~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~---~~a~~~n 397 (854)
+...++++..++..|++++|++.+++++..+ |+++.+++.+|.++...|++++|+.++++++. ..+. ....+++
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~~~~~~~~~~~~~ 111 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLS-RPDLTREQRLLALQ 111 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhc-CCCCCHHHHHHHHH
Confidence 3456678889999999999999999999999 99999999999999999999999999999988 3221 1235688
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCH
Q 003047 398 NLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQP 477 (854)
Q Consensus 398 nLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~ 477 (854)
.+|.+|..+|++++|+.+|++++.. .+....++..++.++...|++++|++.|++++...|.+.
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~~----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 175 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVDE----------------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSL 175 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcC----------------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcc
Confidence 8999999999999999999999986 234567888999999999999999999999999998764
Q ss_pred H-----HHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCC
Q 003047 478 L-----LWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLS 552 (854)
Q Consensus 478 ~-----aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~s 552 (854)
. .|..+|.++. +. ..
T Consensus 176 ~~~~~~~~~~la~~~~---~~---------------------------------------------------------~~ 195 (389)
T PRK11788 176 RVEIAHFYCELAQQAL---AR---------------------------------------------------------GD 195 (389)
T ss_pred hHHHHHHHHHHHHHHH---hC---------------------------------------------------------CC
Confidence 3 3445555444 11 02
Q ss_pred hHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCch
Q 003047 553 MPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTS 632 (854)
Q Consensus 553 l~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~ 632 (854)
++.|..+|++++.+.|....
T Consensus 196 ~~~A~~~~~~al~~~p~~~~------------------------------------------------------------ 215 (389)
T PRK11788 196 LDAARALLKKALAADPQCVR------------------------------------------------------------ 215 (389)
T ss_pred HHHHHHHHHHHHhHCcCCHH------------------------------------------------------------
Confidence 47799999999988776321
Q ss_pred hHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCC-hHHHHHHHHHHHHHHHHhcCCH
Q 003047 633 LEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDC-SRIYIFLGHIYAAEALCLLNRP 710 (854)
Q Consensus 633 ~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~-~~~~~~la~lY~aeAl~~lgr~ 710 (854)
++..+|.++...|++.+|+..+++++. .|.. ...+..++ .+++..|++
T Consensus 216 -------------------------~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~-----~~~~~~g~~ 265 (389)
T PRK11788 216 -------------------------ASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLM-----ECYQALGDE 265 (389)
T ss_pred -------------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHH-----HHHHHcCCH
Confidence 134568889999999999999999997 4443 23444444 466789999
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHH
Q 003047 711 KEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAM 790 (854)
Q Consensus 711 ~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~ 790 (854)
++|+.++++.+. .+ |. . ..+..++.++..
T Consensus 266 ~~A~~~l~~~~~--~~--------------------------------------p~----------~-~~~~~la~~~~~ 294 (389)
T PRK11788 266 AEGLEFLRRALE--EY--------------------------------------PG----------A-DLLLALAQLLEE 294 (389)
T ss_pred HHHHHHHHHHHH--hC--------------------------------------CC----------c-hHHHHHHHHHHH
Confidence 999999999883 11 21 1 223779999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-Hh-cCCHHHHHHHHHh--cCCCccccc
Q 003047 791 QGEFERAHHFVTQALSILPRSTEATLTAIYVD-LM-LGKSQEALAKLKY--CNHVRFLPS 846 (854)
Q Consensus 791 ~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~-L~-~G~~~eA~~~lk~--~~~~~~~~~ 846 (854)
+|++++|...++++++..|++..+..+..... .. .|+.++++.++++ .+.+..+|.
T Consensus 295 ~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 295 QEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999876554443332 22 5699999998887 334455554
No 19
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=2.4e-16 Score=191.96 Aligned_cols=465 Identities=13% Similarity=-0.006 Sum_probs=315.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccC
Q 003047 26 VTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQT 105 (854)
Q Consensus 26 ~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 105 (854)
.++..+.+|+..+++|+|+.|++.|+++++.+|.++...+.++.++... .++.+++..+++.+. +
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~------G~~~~A~~~~eka~~---------p 97 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWA------GRDQEVIDVYERYQS---------S 97 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHc------CCcHHHHHHHHHhcc---------C
Confidence 3557899999999999999999999999999999975555666555544 333446666666551 1
Q ss_pred CCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHH
Q 003047 106 EGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTAL 185 (854)
Q Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~ 185 (854)
++.....+..+|.+|..+|+|++|+++|+++++..+...+
T Consensus 98 ------------------------------------~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~---- 137 (822)
T PRK14574 98 ------------------------------------MNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPD---- 137 (822)
T ss_pred ------------------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH----
Confidence 1223345555688999999999999999999996554433
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhh
Q 003047 186 QICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASEN 265 (854)
Q Consensus 186 ~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (854)
+++.++.+|...+++++|+. +++++.... ++ .
T Consensus 138 -~l~gLa~~y~~~~q~~eAl~---~l~~l~~~d----p~-------------------------------~--------- 169 (822)
T PRK14574 138 -LISGMIMTQADAGRGGVVLK---QATELAERD----PT-------------------------------V--------- 169 (822)
T ss_pred -HHHHHHHHHhhcCCHHHHHH---HHHHhcccC----cc-------------------------------h---------
Confidence 45667899999999999985 456554332 00 0
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 003047 266 ALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVK 345 (854)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk 345 (854)
. ..+....++..+++..+|++.++
T Consensus 170 ---------------------------------------------------~-----~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 170 ---------------------------------------------------Q-----NYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred ---------------------------------------------------H-----HHHHHHHHHHhcchHHHHHHHHH
Confidence 0 00112233333566666999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHH-----cCCHHHHHHHHHHHH
Q 003047 346 LAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ-----LAKYHTSSVFLSKAL 420 (854)
Q Consensus 346 ~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~-----~g~~~eAi~~f~kAL 420 (854)
++++.+ |++..++..+..+....|-...|++...+-...-.+.+....-.....-..+ .....+.....+++|
T Consensus 194 kll~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al 271 (822)
T PRK14574 194 EAVRLA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL 271 (822)
T ss_pred HHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence 999999 9999999999999999999999999888755421111111111111111111 111223333444555
Q ss_pred Hhchhccc---CCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcccc
Q 003047 421 SNSASLRK---DKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYK-QPLLWLRLAECCLMALEKGLV 496 (854)
Q Consensus 421 ~~~~~l~~---~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~-~~~aw~~La~~~i~~~~~~~~ 496 (854)
.....+.. ..+- ..+..-.+....=.++...|++.++++.|+..-.-... -+.+....|..++. .+
T Consensus 272 a~~~~l~~~~~~~p~-----~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~---~~-- 341 (822)
T PRK14574 272 ADYQNLLTRWGKDPE-----AQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYID---RR-- 341 (822)
T ss_pred HHHHHHHhhccCCCc-----cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh---cC--
Confidence 54222110 0000 00111234456677888999999999999986644422 22344555666662 10
Q ss_pred CCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccc
Q 003047 497 APGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSK 576 (854)
Q Consensus 497 e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~ 576 (854)
..+.|...|+.++.-.|..... +
T Consensus 342 -------------------------------------------------------~P~kA~~l~~~~~~~~~~~~~~-~- 364 (822)
T PRK14574 342 -------------------------------------------------------LPEKAAPILSSLYYSDGKTFRN-S- 364 (822)
T ss_pred -------------------------------------------------------CcHHHHHHHHHHhhccccccCC-C-
Confidence 1155888888876655431110 0
Q ss_pred cCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHH
Q 003047 577 FGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQ 656 (854)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 656 (854)
-+ .
T Consensus 365 ---------------------------------------------~~---~----------------------------- 367 (822)
T PRK14574 365 ---------------------------------------------DD---L----------------------------- 367 (822)
T ss_pred ---------------------------------------------cc---h-----------------------------
Confidence 00 0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCC------------Ch---HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 003047 657 ALLANLAYVELEMENPVKALAAARSLLE-LPD------------CS---RIYIFLGHIYAAEALCLLNRPKEAAEHFSMY 720 (854)
Q Consensus 657 ~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~------------~~---~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~ 720 (854)
.....|-|++++.+++.+|.....++.. .|. ++ ..+..+ +..++..|++.+|.+.++..
T Consensus 368 ~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~-----a~~~~~~gdl~~Ae~~le~l 442 (822)
T PRK14574 368 LDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLL-----VQSLVALNDLPTAQKKLEDL 442 (822)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHH-----HHHHHHcCCHHHHHHHHHHH
Confidence 0123568899999999999999999997 441 11 233333 44566799999999999999
Q ss_pred hcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHH
Q 003047 721 LSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHF 800 (854)
Q Consensus 721 l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~ 800 (854)
+. . .|. ++.++..+|.++..+|++.+|++.
T Consensus 443 ~~--~--------------------------------------aP~----------n~~l~~~~A~v~~~Rg~p~~A~~~ 472 (822)
T PRK14574 443 SS--T--------------------------------------APA----------NQNLRIALASIYLARDLPRKAEQE 472 (822)
T ss_pred HH--h--------------------------------------CCC----------CHHHHHHHHHHHHhcCCHHHHHHH
Confidence 82 1 254 688899999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCccccccccc
Q 003047 801 VTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKY-CNHVRFLPSGLQL 850 (854)
Q Consensus 801 ~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~-~~~~~~~~~~~~~ 850 (854)
++.++.+.|++..+...++++.+.+|++++|..++++ ....|.+|..-+|
T Consensus 473 ~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~l 523 (822)
T PRK14574 473 LKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQEL 523 (822)
T ss_pred HHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHHH
Confidence 9999999999999999999999999999999999988 8888888876553
No 20
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=9.2e-17 Score=176.63 Aligned_cols=438 Identities=17% Similarity=0.161 Sum_probs=301.1
Q ss_pred hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhh
Q 003047 22 GVLSVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARAT 101 (854)
Q Consensus 22 ~~~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 101 (854)
-.+..+..|=-+|-.+|.+|+|++|+++|++++++.|+.|--+.|++-||-..+ ++.+-++...++++
T Consensus 110 ~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lg------d~~~Vied~TkALE------ 177 (606)
T KOG0547|consen 110 ERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLG------DWEKVIEDCTKALE------ 177 (606)
T ss_pred HHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHh------hHHHHHHHHHHHhh------
Confidence 345567777789999999999999999999999999999999999998877543 45556666666663
Q ss_pred cccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCch
Q 003047 102 GEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDE 181 (854)
Q Consensus 102 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e 181 (854)
+ +|+-.-+++-.|.++-.+|++++|+.=. -++-+++...+
T Consensus 178 --------------------------------------l-~P~Y~KAl~RRA~A~E~lg~~~eal~D~-tv~ci~~~F~n 217 (606)
T KOG0547|consen 178 --------------------------------------L-NPDYVKALLRRASAHEQLGKFDEALFDV-TVLCILEGFQN 217 (606)
T ss_pred --------------------------------------c-CcHHHHHHHHHHHHHHhhccHHHHHHhh-hHHHHhhhccc
Confidence 2 5667779999999999999999998655 23333333322
Q ss_pred hhHHHHHHHHH-HHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhcc-CCCCCCCcccc---cccchh
Q 003047 182 TTALQICLLLL-DVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKY-SSVPSNSSTAD---ASNSDL 256 (854)
Q Consensus 182 ~~~~~~~l~l~-~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~ 256 (854)
. ....++ .++..+++ .++- .-++-+++ ..+++.|. ++.| .|..+++.... .++++.
T Consensus 218 ~----s~~~~~eR~Lkk~a~-~ka~-------e~~k~nr~-----p~lPS~~f--i~syf~sF~~~~~~~~~~~~~ksDa 278 (606)
T KOG0547|consen 218 A----SIEPMAERVLKKQAM-KKAK-------EKLKENRP-----PVLPSATF--IASYFGSFHADPKPLFDNKSDKSDA 278 (606)
T ss_pred c----hhHHHHHHHHHHHHH-HHHH-------HhhcccCC-----CCCCcHHH--HHHHHhhccccccccccCCCccchh
Confidence 2 111111 22222221 1111 11110000 01122110 0111 11111111100 001111
Q ss_pred hhhhhhhhhhhhhhhh-----------hhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHH
Q 003047 257 AATVNASENALSRTLS-----------EETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQL 325 (854)
Q Consensus 257 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l 325 (854)
... +.+..|..... +++..+.+.. ..|++ +. ..++......
T Consensus 279 -~l~-~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~------------------~~n~~-------d~-~le~~A~al~ 330 (606)
T KOG0547|consen 279 -ALA-EALEALEKGLEEGYLKAYDKATEECLGSESSL------------------SVNEI-------DA-ELEYMAEALL 330 (606)
T ss_pred -hHH-HHHHHHHhhCchhHHHHHHHHHHHhhhhhhhc------------------ccccc-------ch-hHHHHHHHHH
Confidence 011 11222222211 2222222221 11111 11 1355566778
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHH
Q 003047 326 YKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ 405 (854)
Q Consensus 326 ~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~ 405 (854)
+++-+++..|+...|.+.++.+|+++ |.+..-|+.+|.+|....+-++-.+.|+++.. .+|. ++.+|+..|.+++-
T Consensus 331 ~~gtF~fL~g~~~~a~~d~~~~I~l~--~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~-ldp~-n~dvYyHRgQm~fl 406 (606)
T KOG0547|consen 331 LRGTFHFLKGDSLGAQEDFDAAIKLD--PAFNSLYIKRAAAYADENQSEKMWKDFNKAED-LDPE-NPDVYYHRGQMRFL 406 (606)
T ss_pred HhhhhhhhcCCchhhhhhHHHHHhcC--cccchHHHHHHHHHhhhhccHHHHHHHHHHHh-cCCC-CCchhHhHHHHHHH
Confidence 89999999999999999999999999 99999899999999999999999999999999 7995 67788899999999
Q ss_pred cCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 003047 406 LAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAE 485 (854)
Q Consensus 406 ~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~ 485 (854)
+++|++|+.-|+|++.+ .|.+...+..++.+++++++++++...|+.+...+|+-++++.--|+
T Consensus 407 L~q~e~A~aDF~Kai~L----------------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAe 470 (606)
T KOG0547|consen 407 LQQYEEAIADFQKAISL----------------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAE 470 (606)
T ss_pred HHHHHHHHHHHHHHhhc----------------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 99999999999999999 34567788899999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHh
Q 003047 486 CCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALH 565 (854)
Q Consensus 486 ~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~ 565 (854)
++.. +. .+..|.+.|+.|+.
T Consensus 471 iLtD---qq---------------------------------------------------------qFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 471 ILTD---QQ---------------------------------------------------------QFDKAVKQYDKAIE 490 (606)
T ss_pred HHhh---HH---------------------------------------------------------hHHHHHHHHHHHHh
Confidence 8772 10 13559999999999
Q ss_pred hcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhh
Q 003047 566 LLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYED 645 (854)
Q Consensus 566 L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~ 645 (854)
|.|..+.-+. |+ .|
T Consensus 491 LE~~~~~~~v---------------------------~~---------------------------------------~p 504 (606)
T KOG0547|consen 491 LEPREHLIIV---------------------------NA---------------------------------------AP 504 (606)
T ss_pred hccccccccc---------------------------cc---------------------------------------hh
Confidence 9999553110 00 00
Q ss_pred HhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 003047 646 VCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYL 721 (854)
Q Consensus 646 ~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l 721 (854)
+.++. + .++...+|+..|+...+++++ +|.+--++--||.+- ++.|+++||++.|+.+.
T Consensus 505 lV~Ka-------~-----l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~-----lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 505 LVHKA-------L-----LVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFE-----LQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhhhh-------H-----hhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHH-----HHHhhHHHHHHHHHHHH
Confidence 01111 1 134466999999999999998 888999998888754 57899999999999988
No 21
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.80 E-value=2.3e-16 Score=185.11 Aligned_cols=511 Identities=13% Similarity=0.034 Sum_probs=305.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCC
Q 003047 34 AALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGNIGS 113 (854)
Q Consensus 34 a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~ 113 (854)
|++....|+-+.|+..|+.+++++|+++.++--||++.... .+++.+..++..+.++... +...|+++|-+.+
T Consensus 206 g~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~---~d~~s~~~~~~ll~~ay~~----n~~nP~~l~~LAn 278 (1018)
T KOG2002|consen 206 GHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNF---NDSDSYKKGVQLLQRAYKE----NNENPVALNHLAN 278 (1018)
T ss_pred hhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHc---cchHHHHHHHHHHHHHHhh----cCCCcHHHHHHHH
Confidence 46666666666677777777777776666666666554433 3456666666666666532 1222222211111
Q ss_pred ccc-CCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHH
Q 003047 114 KVG-LGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLL 192 (854)
Q Consensus 114 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~ 192 (854)
-+. -+.....-..+--+.. ....++..+..+|++|..|..+|+|++|..+|.+.++.-+.. .+-..+-++
T Consensus 279 ~fyfK~dy~~v~~la~~ai~-----~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~----~~l~~~Glg 349 (1018)
T KOG2002|consen 279 HFYFKKDYERVWHLAEHAIK-----NTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN----FVLPLVGLG 349 (1018)
T ss_pred HHhhcccHHHHHHHHHHHHH-----hhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC----ccccccchh
Confidence 110 0000000000000000 011134467789999999999999999999999999854332 122467789
Q ss_pred HHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhh
Q 003047 193 DVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLS 272 (854)
Q Consensus 193 ~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (854)
++|+..|++..|+ -.||+.+... ++ ... ..-.++-|+-..+
T Consensus 350 Qm~i~~~dle~s~---~~fEkv~k~~----p~--------------------~~e------------tm~iLG~Lya~~~ 390 (1018)
T KOG2002|consen 350 QMYIKRGDLEESK---FCFEKVLKQL----PN--------------------NYE------------TMKILGCLYAHSA 390 (1018)
T ss_pred HHHHHhchHHHHH---HHHHHHHHhC----cc--------------------hHH------------HHHHHHhHHHhhh
Confidence 9999999999998 5788887664 11 111 1111222221111
Q ss_pred hhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcC
Q 003047 273 EETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIAR 352 (854)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~ 352 (854)
.....-+ .+.+-+|-+.-.. +++. ..++-.+++|.+. +...++..+.+++.+-.
T Consensus 391 ~~~~~~d--------------------~a~~~l~K~~~~~---~~d~--~a~l~laql~e~~-d~~~sL~~~~~A~d~L~ 444 (1018)
T KOG2002|consen 391 KKQEKRD--------------------KASNVLGKVLEQT---PVDS--EAWLELAQLLEQT-DPWASLDAYGNALDILE 444 (1018)
T ss_pred hhhHHHH--------------------HHHHHHHHHHhcc---cccH--HHHHHHHHHHHhc-ChHHHHHHHHHHHHHHH
Confidence 0000000 1112222222111 1111 2444557777764 55555888888885442
Q ss_pred ---CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc----cCCC----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003047 353 ---GKDSSLALFLKSQLEYARRNHRKAIKLLLALSNR----TEMG----ISSMFNNNLGCIYYQLAKYHTSSVFLSKALS 421 (854)
Q Consensus 353 ---~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~----~dp~----~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~ 421 (854)
++=-++.+.++|-+++..|++.+|...+.+++.. .+++ .+....+|++.++-.+++++.|.+.|+.++.
T Consensus 445 ~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk 524 (1018)
T KOG2002|consen 445 SKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK 524 (1018)
T ss_pred HcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3555778899999999999999999999999984 1221 1123477899999999999999999999999
Q ss_pred hchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCC
Q 003047 422 NSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRS 501 (854)
Q Consensus 422 ~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~ 501 (854)
. .|....++..+|...-..+...+|...+..++.++..+|.+|.-+|+++...... +.
T Consensus 525 e----------------hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~------~~ 582 (1018)
T KOG2002|consen 525 E----------------HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEW------KP 582 (1018)
T ss_pred H----------------CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhh------cc
Confidence 8 3455678888886666778899999999999999999999999999998842222 11
Q ss_pred CCCCcccc------------eeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCC
Q 003047 502 LSDGSEVK------------VHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNY 569 (854)
Q Consensus 502 ~~~~~~~~------------~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~ 569 (854)
.+.+-..+ .-.+|- .+..-...+ ++++ .......+.|..||.++|..+|.
T Consensus 583 a~k~f~~i~~~~~~~~D~YsliaLGN-~~~~~l~~~--~rn~---------------ek~kk~~~KAlq~y~kvL~~dpk 644 (1018)
T KOG2002|consen 583 AKKKFETILKKTSTKTDAYSLIALGN-VYIQALHNP--SRNP---------------EKEKKHQEKALQLYGKVLRNDPK 644 (1018)
T ss_pred cccHHHHHHhhhccCCchhHHHHhhH-HHHHHhccc--ccCh---------------HHHHHHHHHHHHHHHHHHhcCcc
Confidence 11110000 001121 000000000 0000 00123478999999999999998
Q ss_pred CcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHH
Q 003047 570 PDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRR 649 (854)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~ 649 (854)
..-+ ..+++..+ ..+|...++.. .++.|+
T Consensus 645 N~yA----ANGIgiVL---------------------------------A~kg~~~~A~d------------IFsqVr-- 673 (1018)
T KOG2002|consen 645 NMYA----ANGIGIVL---------------------------------AEKGRFSEARD------------IFSQVR-- 673 (1018)
T ss_pred hhhh----ccchhhhh---------------------------------hhccCchHHHH------------HHHHHH--
Confidence 6532 22222222 12233222211 111111
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC---CCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 003047 650 ENQMIKQALLANLAYVELEMENPVKALAAARSLLEL---PDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYL 721 (854)
Q Consensus 650 ~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~~---p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l 721 (854)
....-.+..|.|+|.|++++|+|..|+..|...+.. .+.+.... |+|+|+...|++.+|...+-+++
T Consensus 674 Ea~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~-----~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 674 EATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLH-----YLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHH-----HHHHHHHHhhhHHHHHHHHHHHH
Confidence 111112345889999999999999999999999962 23566664 45557888999999999999998
No 22
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=2.8e-16 Score=172.86 Aligned_cols=397 Identities=15% Similarity=0.102 Sum_probs=279.6
Q ss_pred hhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCC
Q 003047 144 DVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQV 223 (854)
Q Consensus 144 ~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~ 223 (854)
+-+..+-|.|+=+|..|+|++||++|.+++.. .|.+.. -+.+....|...|++.+.+ ...-+++.+. +
T Consensus 113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l-~p~epi----FYsNraAcY~~lgd~~~Vi---ed~TkALEl~----P 180 (606)
T KOG0547|consen 113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIEL-CPDEPI----FYSNRAACYESLGDWEKVI---EDCTKALELN----P 180 (606)
T ss_pred HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhc-CCCCch----hhhhHHHHHHHHhhHHHHH---HHHHHHhhcC----c
Confidence 45667778899999999999999999999994 443332 2556778999999999987 4666788775 2
Q ss_pred CCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhh------hh--hhhhhhhhhhhhhhhcc--ccCC
Q 003047 224 DSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRT------LS--EETLEDDTVLALSSLEI--SGQN 293 (854)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~--~~~~ 293 (854)
+- . .+|.++ +| .+++.+-++ ++| ..++
T Consensus 181 ~Y------------------------------~--------KAl~RRA~A~E~lg~~~eal~D~tv-----~ci~~~F~n 217 (606)
T KOG0547|consen 181 DY------------------------------V--------KALLRRASAHEQLGKFDEALFDVTV-----LCILEGFQN 217 (606)
T ss_pred HH------------------------------H--------HHHHHHHHHHHhhccHHHHHHhhhH-----HHHhhhccc
Confidence 21 1 122222 22 333444344 233 2221
Q ss_pred CCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCC-------------------
Q 003047 294 LTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGK------------------- 354 (854)
Q Consensus 294 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P------------------- 354 (854)
..+...--|++-.++.. ++.+-++ .++-|
T Consensus 218 ---------------------------~s~~~~~eR~Lkk~a~~-ka~e~~k----~nr~p~lPS~~fi~syf~sF~~~~ 265 (606)
T KOG0547|consen 218 ---------------------------ASIEPMAERVLKKQAMK-KAKEKLK----ENRPPVLPSATFIASYFGSFHADP 265 (606)
T ss_pred ---------------------------chhHHHHHHHHHHHHHH-HHHHhhc----ccCCCCCCcHHHHHHHHhhccccc
Confidence 12333333444443332 2333333 11101
Q ss_pred --------CCHHHHHHHHHHHHHhc---CHHHHHHHHHHhhhc--cCCCcc---------HHHHHHHHHHHHHcCCHHHH
Q 003047 355 --------DSSLALFLKSQLEYARR---NHRKAIKLLLALSNR--TEMGIS---------SMFNNNLGCIYYQLAKYHTS 412 (854)
Q Consensus 355 --------~~~~a~~lla~ly~~~g---~~~kAl~~l~kal~~--~dp~~~---------a~~~nnLG~iy~~~g~~~eA 412 (854)
+..++-..-+.-++..+ .|.+|...+.+.... ..+..+ +.+++..|..|+-.|++..|
T Consensus 266 ~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a 345 (606)
T KOG0547|consen 266 KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGA 345 (606)
T ss_pred cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhh
Confidence 11233333333444444 788888877776541 122233 67777789999999999999
Q ss_pred HHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 003047 413 SVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALE 492 (854)
Q Consensus 413 i~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~ 492 (854)
..-|++++.+.+ .....|..+|.+|++..+.++-+..|.+|..++|+++++|+..|+..+.+.
T Consensus 346 ~~d~~~~I~l~~----------------~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~- 408 (606)
T KOG0547|consen 346 QEDFDAAIKLDP----------------AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQ- 408 (606)
T ss_pred hhhHHHHHhcCc----------------ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHH-
Confidence 999999999832 233447789999999999999999999999999999999999999887311
Q ss_pred ccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcc
Q 003047 493 KGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDL 572 (854)
Q Consensus 493 ~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~ 572 (854)
.+++|...|+.|+.|+|++..
T Consensus 409 -----------------------------------------------------------q~e~A~aDF~Kai~L~pe~~~ 429 (606)
T KOG0547|consen 409 -----------------------------------------------------------QYEEAIADFQKAISLDPENAY 429 (606)
T ss_pred -----------------------------------------------------------HHHHHHHHHHHHhhcChhhhH
Confidence 147799999999999999552
Q ss_pred cccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhH
Q 003047 573 NYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQ 652 (854)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 652 (854)
T Consensus 430 -------------------------------------------------------------------------------- 429 (606)
T KOG0547|consen 430 -------------------------------------------------------------------------------- 429 (606)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCC
Q 003047 653 MIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPF 731 (854)
Q Consensus 653 ~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~ 731 (854)
.+.-++++..+++++.++..-+.++.. .|.++..|.+.| |+|...+++++|++.|+.++. +....
T Consensus 430 -----~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fA-----eiLtDqqqFd~A~k~YD~ai~--LE~~~-- 495 (606)
T KOG0547|consen 430 -----AYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFA-----EILTDQQQFDKAVKQYDKAIE--LEPRE-- 495 (606)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHH-----HHHhhHHhHHHHHHHHHHHHh--hcccc--
Confidence 133457788899999999999999997 899999996654 588899999999999999993 32100
Q ss_pred CchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCC
Q 003047 732 SGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFA-MQGEFERAHHFVTQALSILPR 810 (854)
Q Consensus 732 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~-~~g~~e~A~~~~~~Al~~~P~ 810 (854)
+ . + ..++..+++-|.+.. -.+++.+|+.++++|++++|.
T Consensus 496 ------~----~---------------------------~---~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpk 535 (606)
T KOG0547|consen 496 ------H----L---------------------------I---IVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPK 535 (606)
T ss_pred ------c----c---------------------------c---cccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCch
Confidence 0 0 0 002222333333332 349999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003047 811 STEATLTAIYVDLMLGKSQEALAKLKY 837 (854)
Q Consensus 811 ~~~a~~l~~y~~L~~G~~~eA~~~lk~ 837 (854)
+-.+.-.++.++|++|+.++|++++.+
T Consensus 536 ce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 536 CEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999999999999999999876
No 23
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=5.1e-17 Score=185.13 Aligned_cols=301 Identities=17% Similarity=0.121 Sum_probs=236.8
Q ss_pred hhHHHHHHHHHHHHHhhcH--HHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhccccc
Q 003047 144 DVSVAKLNIAVIWFHLHEY--AKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVN 221 (854)
Q Consensus 144 ~~~~~~~n~a~~~~~~~~y--~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~ 221 (854)
+-..++.++|..|....+| .+|+..|+++-..+.... -|...++..|+++++|++|..+...+.+.-+..
T Consensus 315 ~l~~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~-----wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~r--- 386 (638)
T KOG1126|consen 315 ELMELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTG-----WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYR--- 386 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---
Confidence 3445777889999888887 799999999555443322 256668899999999999986543333322111
Q ss_pred CCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCc
Q 003047 222 QVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLS 301 (854)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (854)
.+.
T Consensus 387 -v~~---------------------------------------------------------------------------- 389 (638)
T KOG1126|consen 387 -VKG---------------------------------------------------------------------------- 389 (638)
T ss_pred -ccc----------------------------------------------------------------------------
Confidence 000
Q ss_pred cchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 003047 302 SNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLL 381 (854)
Q Consensus 302 ~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~ 381 (854)
++-|...++-. +...+ ----.+.+++.+ |+.|..|-.+|+.|-.+++++.|+++|+
T Consensus 390 --------------meiyST~LWHL-------q~~v~-Ls~Laq~Li~~~--~~sPesWca~GNcfSLQkdh~~Aik~f~ 445 (638)
T KOG1126|consen 390 --------------MEIYSTTLWHL-------QDEVA-LSYLAQDLIDTD--PNSPESWCALGNCFSLQKDHDTAIKCFK 445 (638)
T ss_pred --------------hhHHHHHHHHH-------HhhHH-HHHHHHHHHhhC--CCCcHHHHHhcchhhhhhHHHHHHHHHH
Confidence 11122222222 11111 112236788899 9999999999999999999999999999
Q ss_pred HhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHH
Q 003047 382 ALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVL 461 (854)
Q Consensus 382 kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~ee 461 (854)
+++. .||. .+.+|--+|.-+.....++.|..+|++||.. .+++..+||-+|.+|+++++++.
T Consensus 446 RAiQ-ldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~----------------~~rhYnAwYGlG~vy~Kqek~e~ 507 (638)
T KOG1126|consen 446 RAIQ-LDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGV----------------DPRHYNAWYGLGTVYLKQEKLEF 507 (638)
T ss_pred Hhhc-cCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcC----------------CchhhHHHHhhhhheeccchhhH
Confidence 9999 7995 5889998999999999999999999999998 35678999999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCC
Q 003047 462 AARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDS 541 (854)
Q Consensus 462 Al~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~ 541 (854)
|.-.|++|++++|.+..+...+|..+. +.+ .
T Consensus 508 Ae~~fqkA~~INP~nsvi~~~~g~~~~---~~k-------------------------------------~--------- 538 (638)
T KOG1126|consen 508 AEFHFQKAVEINPSNSVILCHIGRIQH---QLK-------------------------------------R--------- 538 (638)
T ss_pred HHHHHHhhhcCCccchhHHhhhhHHHH---Hhh-------------------------------------h---------
Confidence 999999999999999888777776655 210 1
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccC
Q 003047 542 SLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTAN 621 (854)
Q Consensus 542 ~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (854)
.+.|...|++|++++|..+..
T Consensus 539 -----------~d~AL~~~~~A~~ld~kn~l~------------------------------------------------ 559 (638)
T KOG1126|consen 539 -----------KDKALQLYEKAIHLDPKNPLC------------------------------------------------ 559 (638)
T ss_pred -----------hhHHHHHHHHHHhcCCCCchh------------------------------------------------
Confidence 156999999999999996520
Q ss_pred CCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHH
Q 003047 622 GDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYA 700 (854)
Q Consensus 622 gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~ 700 (854)
.+..|.++.+++++++|+.-++++-+ .|+.+.+|..+|.+|.
T Consensus 560 -------------------------------------~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k 602 (638)
T KOG1126|consen 560 -------------------------------------KYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYK 602 (638)
T ss_pred -------------------------------------HHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 12446789999999999999999998 8999999999999777
Q ss_pred HHHHHhcCCHHHHHHHHHhhh
Q 003047 701 AEALCLLNRPKEAAEHFSMYL 721 (854)
Q Consensus 701 aeAl~~lgr~~eAl~~l~~~l 721 (854)
.+|+.+.|+.+|..+.
T Consensus 603 -----~~~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 603 -----RLGNTDLALLHFSWAL 618 (638)
T ss_pred -----HHccchHHHHhhHHHh
Confidence 6899999999999998
No 24
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=5.9e-16 Score=167.93 Aligned_cols=492 Identities=17% Similarity=0.127 Sum_probs=315.7
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------CCC------CHHHHHHHHHHHHHHhCCCChhHHH
Q 003047 23 VLSVTATLAKEAALYFQSRKFDECLDLLKQLLDK------------KPD------DPKILHNIAIAEYFRDGCTDPKKLL 84 (854)
Q Consensus 23 ~~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~------------~~~------~~~~l~nla~~~~~~~~~~~~~~~~ 84 (854)
...++-.|+.+....-..|+|++|++--+.+=.. -|. -..|++||+.-|-.. .-+.
T Consensus 145 le~ev~ell~es~ian~~~~~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~n------dm~~ 218 (840)
T KOG2003|consen 145 LEKEVMELLEESCIANECGDFKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEAN------DMTA 218 (840)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhh------HHHH
Confidence 3456777888899999999999998866544221 111 245677777432211 1122
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHH
Q 003047 85 EALNNVKNKSEELARATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAK 164 (854)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~ 164 (854)
++|....--+.. .+ =|....+..|+|.|+++++.|.|
T Consensus 219 ealntyeiivkn------------------------------------------km-f~nag~lkmnigni~~kkr~fsk 255 (840)
T KOG2003|consen 219 EALNTYEIIVKN------------------------------------------KM-FPNAGILKMNIGNIHFKKREFSK 255 (840)
T ss_pred HHhhhhhhhhcc------------------------------------------cc-cCCCceeeeeecceeeehhhHHH
Confidence 333322222210 00 12234466799999999999999
Q ss_pred HHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCC
Q 003047 165 ALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPS 244 (854)
Q Consensus 165 A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (854)
||++|+-++..++.+...+.++++.+++...++.|+|+.||.. |+-..... ++-
T Consensus 256 aikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dains---fdh~m~~~--pn~--------------------- 309 (840)
T KOG2003|consen 256 AIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINS---FDHCMEEA--PNF--------------------- 309 (840)
T ss_pred HHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhh---HHHHHHhC--ccH---------------------
Confidence 9999999999999999999999999999999999999999954 45443332 100
Q ss_pred CCcccccccchhhhhhhhhhhhhhhhhh--hhhhh-hhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHH
Q 003047 245 NSSTADASNSDLAATVNASENALSRTLS--EETLE-DDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKL 321 (854)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 321 (854)
..++ | +-+....++ |+.-+ |...+ +|.. -+..+.|..
T Consensus 310 -----------~a~~-n--l~i~~f~i~d~ekmkeaf~kli-----~ip~---------------------~~dddkyi~ 349 (840)
T KOG2003|consen 310 -----------IAAL-N--LIICAFAIGDAEKMKEAFQKLI-----DIPG---------------------EIDDDKYIK 349 (840)
T ss_pred -----------Hhhh-h--hhhhheecCcHHHHHHHHHHHh-----cCCC---------------------CCCcccccC
Confidence 0000 0 111223333 11111 22221 1100 011111100
Q ss_pred ---------HHHHHHHHHHHHh--cCHHHHHHHHHHHHHhcC---CCCCH--------------------HHHHHHHHHH
Q 003047 322 ---------KLQLYKVRFLLLT--RNLKHAKREVKLAMNIAR---GKDSS--------------------LALFLKSQLE 367 (854)
Q Consensus 322 ---------~l~l~K~~lyl~~--~~~~~A~~elk~al~~~~---~P~~~--------------------~a~~lla~ly 367 (854)
.-+-.|.--+-.+ .+...|.+.+-.+.++-- -|+.. +.-..++.-+
T Consensus 350 ~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~ 429 (840)
T KOG2003|consen 350 EKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGEL 429 (840)
T ss_pred CcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHH
Confidence 0000011000000 111122233322222210 02221 1224567778
Q ss_pred HHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHH
Q 003047 368 YARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQL--AKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLI 445 (854)
Q Consensus 368 ~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~--g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~ 445 (854)
+.+|+++.|+++++-..+ .+......+-+||..+++-+ +++..|..|-..||.+++ -++.+
T Consensus 430 lk~~d~~~aieilkv~~~-kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr----------------yn~~a 492 (840)
T KOG2003|consen 430 LKNGDIEGAIEILKVFEK-KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR----------------YNAAA 492 (840)
T ss_pred HhccCHHHHHHHHHHHHh-ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc----------------cCHHH
Confidence 888888888888766555 34333344566776666653 367788888888887722 23566
Q ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeecc
Q 003047 446 TYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMED 525 (854)
Q Consensus 446 ~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~ 525 (854)
+.|.|.+.+..|++++|.+.|+++|.-+..-..+++++|..+- ..
T Consensus 493 ~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e---~~-------------------------------- 537 (840)
T KOG2003|consen 493 LTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAE---AL-------------------------------- 537 (840)
T ss_pred hhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHH---Hh--------------------------------
Confidence 7788888888999999999999888877777777777775433 10
Q ss_pred CCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccc
Q 003047 526 GFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLS 605 (854)
Q Consensus 526 ~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (854)
..+++|..||-....++-...
T Consensus 538 -------------------------~~ldeald~f~klh~il~nn~---------------------------------- 558 (840)
T KOG2003|consen 538 -------------------------GNLDEALDCFLKLHAILLNNA---------------------------------- 558 (840)
T ss_pred -------------------------cCHHHHHHHHHHHHHHHHhhH----------------------------------
Confidence 146789999876554443311
Q ss_pred cccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-
Q 003047 606 SLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE- 684 (854)
Q Consensus 606 ~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~- 684 (854)
-+|+-+|.+|-.+.++..|++.+-++-.
T Consensus 559 ---------------------------------------------------evl~qianiye~led~aqaie~~~q~~sl 587 (840)
T KOG2003|consen 559 ---------------------------------------------------EVLVQIANIYELLEDPAQAIELLMQANSL 587 (840)
T ss_pred ---------------------------------------------------HHHHHHHHHHHHhhCHHHHHHHHHHhccc
Confidence 2356678899999999999999999987
Q ss_pred CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCC
Q 003047 685 LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPED 764 (854)
Q Consensus 685 ~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 764 (854)
.|.+|..+.-||.+|-.| |+-..|.+|+-..-..
T Consensus 588 ip~dp~ilskl~dlydqe-----gdksqafq~~ydsyry----------------------------------------- 621 (840)
T KOG2003|consen 588 IPNDPAILSKLADLYDQE-----GDKSQAFQCHYDSYRY----------------------------------------- 621 (840)
T ss_pred CCCCHHHHHHHHHHhhcc-----cchhhhhhhhhhcccc-----------------------------------------
Confidence 899999999999999865 8999998887665521
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCcc
Q 003047 765 SRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKY-CNHVRF 843 (854)
Q Consensus 765 p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~-~~~~~~ 843 (854)
+|-+. ..+-| ||..|....=+++|+..|++|.-+.|+...+.++.+-+.-+.|+++.|+.++|. ||..|.
T Consensus 622 ----fp~ni---e~iew--l~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 622 ----FPCNI---ETIEW--LAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE 692 (840)
T ss_pred ----cCcch---HHHHH--HHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc
Confidence 12211 24445 899999999999999999999999999999999999999999999999999999 998887
Q ss_pred ccc
Q 003047 844 LPS 846 (854)
Q Consensus 844 ~~~ 846 (854)
+-.
T Consensus 693 dld 695 (840)
T KOG2003|consen 693 DLD 695 (840)
T ss_pred chH
Confidence 643
No 25
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=3.5e-16 Score=169.60 Aligned_cols=486 Identities=16% Similarity=0.157 Sum_probs=339.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhccc
Q 003047 27 TATLAKEAALYFQSRKFDECLDLLKQLLD--KKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQ 104 (854)
Q Consensus 27 ~~~l~~~a~~~~~~g~y~~Al~~l~~~l~--~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 104 (854)
..-||--|.+|--+.-+.+|+..|+=+.. ..|+....-.|+|.++|-++.|+++.+ ..+-++.+
T Consensus 201 fsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaik------fyrmaldq-------- 266 (840)
T KOG2003|consen 201 FSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIK------FYRMALDQ-------- 266 (840)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHH------HHHHHHhh--------
Confidence 34566677777777888899999987776 378888889999999997777666555 44444421
Q ss_pred CCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhH
Q 003047 105 TEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTA 184 (854)
Q Consensus 105 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~ 184 (854)
.. ++....---.+.|+|+.+.+.|+|+.||.-|+-.+...+. .
T Consensus 267 vp--------------------------------sink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn---~-- 309 (840)
T KOG2003|consen 267 VP--------------------------------SINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPN---F-- 309 (840)
T ss_pred cc--------------------------------ccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCcc---H--
Confidence 11 0001111225679999999999999999999988873322 2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhh
Q 003047 185 LQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASE 264 (854)
Q Consensus 185 ~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (854)
...++|+.+|+.-|+.+|.- +.|+|.+.+--.++.| ||-+.++++.+ + +.|...
T Consensus 310 -~a~~nl~i~~f~i~d~ekmk---eaf~kli~ip~~~ddd-------------kyi~~~ddp~~--------~-ll~eai 363 (840)
T KOG2003|consen 310 -IAALNLIICAFAIGDAEKMK---EAFQKLIDIPGEIDDD-------------KYIKEKDDPDD--------N-LLNEAI 363 (840)
T ss_pred -HhhhhhhhhheecCcHHHHH---HHHHHHhcCCCCCCcc-------------cccCCcCCcch--------H-HHHHHH
Confidence 24788899999999999987 4678887765334332 46666666553 1 111111
Q ss_pred h-hhhhh-------hhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhh---hhcccchhHHHHHHHHHHHHHHHH
Q 003047 265 N-ALSRT-------LSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTL---VDRSISTVDLKLKLQLYKVRFLLL 333 (854)
Q Consensus 265 ~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~l~l~K~~lyl~ 333 (854)
+ .+-.. ..|+++-.-..+ ..||-....-+|--+ +-+.....++...+++-|+--|+.
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~ki------------iapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk 431 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKI------------IAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLK 431 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHH------------hccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHh
Confidence 1 11111 112222211111 011111111111100 001111234556788899999999
Q ss_pred hcCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHH--hcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHH
Q 003047 334 TRNLKHAKREVKLAMNIARGKDSS-LALFLKSQLEYA--RRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYH 410 (854)
Q Consensus 334 ~~~~~~A~~elk~al~~~~~P~~~-~a~~lla~ly~~--~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~ 410 (854)
+|+++.|++-+|-.-..+ ..-. .+-.++.-+++. -.++-+|-.+-..++. .+. .++.++.|.|.+-+..|+++
T Consensus 432 ~~d~~~aieilkv~~~kd--nk~~saaa~nl~~l~flqggk~~~~aqqyad~aln-~dr-yn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 432 NGDIEGAIEILKVFEKKD--NKTASAAANNLCALRFLQGGKDFADAQQYADIALN-IDR-YNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred ccCHHHHHHHHHHHHhcc--chhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhc-ccc-cCHHHhhcCCceeeecCcHH
Confidence 999999999988777766 3222 233445555554 3368899999999998 566 57889999999999999999
Q ss_pred HHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 003047 411 TSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMA 490 (854)
Q Consensus 411 eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~ 490 (854)
+|.+.|+.||..+ ....+++||+|..+..+|+.++|++||.+.-.+--++..++++++.+|-.+
T Consensus 508 ka~~~ykeal~nd----------------asc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~l 571 (840)
T KOG2003|consen 508 KAAEFYKEALNND----------------ASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELL 571 (840)
T ss_pred HHHHHHHHHHcCc----------------hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999999999972 234689999999999999999999999999999999999999999988731
Q ss_pred HhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCC
Q 003047 491 LEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYP 570 (854)
Q Consensus 491 ~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~ 570 (854)
.. ...|+..|-+|..+.|.+
T Consensus 572 ed------------------------------------------------------------~aqaie~~~q~~slip~d 591 (840)
T KOG2003|consen 572 ED------------------------------------------------------------PAQAIELLMQANSLIPND 591 (840)
T ss_pred hC------------------------------------------------------------HHHHHHHHHHhcccCCCC
Confidence 11 033888888888888885
Q ss_pred cccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHh
Q 003047 571 DLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRE 650 (854)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~ 650 (854)
+
T Consensus 592 p------------------------------------------------------------------------------- 592 (840)
T KOG2003|consen 592 P------------------------------------------------------------------------------- 592 (840)
T ss_pred H-------------------------------------------------------------------------------
Confidence 5
Q ss_pred hHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCC
Q 003047 651 NQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDL 729 (854)
Q Consensus 651 ~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~ 729 (854)
.+|..||-.|-.-||-..|..|+-.... .|.+....--||..|. ...=.+.|+.+|+++-. ..
T Consensus 593 ------~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyi-----dtqf~ekai~y~ekaal--iq--- 656 (840)
T KOG2003|consen 593 ------AILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYI-----DTQFSEKAINYFEKAAL--IQ--- 656 (840)
T ss_pred ------HHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHH-----hhHHHHHHHHHHHHHHh--cC---
Confidence 2466778888889999999998888777 7777788888887665 45678899999999872 11
Q ss_pred CCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003047 730 PFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILP 809 (854)
Q Consensus 730 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P 809 (854)
.++.+| ..-+|.++...|+|.+|...|++..+..|
T Consensus 657 ----p~~~kw-----------------------------------------qlmiasc~rrsgnyqka~d~yk~~hrkfp 691 (840)
T KOG2003|consen 657 ----PNQSKW-----------------------------------------QLMIASCFRRSGNYQKAFDLYKDIHRKFP 691 (840)
T ss_pred ----ccHHHH-----------------------------------------HHHHHHHHHhcccHHHHHHHHHHHHHhCc
Confidence 111111 24478899999999999999999999999
Q ss_pred CCHHHHHHHHHH
Q 003047 810 RSTEATLTAIYV 821 (854)
Q Consensus 810 ~~~~a~~l~~y~ 821 (854)
.+..-+..+|.+
T Consensus 692 edldclkflvri 703 (840)
T KOG2003|consen 692 EDLDCLKFLVRI 703 (840)
T ss_pred cchHHHHHHHHH
Confidence 887666666665
No 26
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=9.6e-15 Score=160.18 Aligned_cols=273 Identities=14% Similarity=0.144 Sum_probs=208.6
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCC-------------
Q 003047 325 LYKVRFLLLTRNLKHAKREVKLAMNI-ARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMG------------- 390 (854)
Q Consensus 325 l~K~~lyl~~~~~~~A~~elk~al~~-~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~------------- 390 (854)
++...+|...++.++++.....++.. . |.+.-.....|.+.+.+.++++|+..|+.+.+ .+|.
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf--~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~k-nDPYRl~dmdlySN~LY 307 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGF--PNSMYIKTQIAAASYNQRDFDQAESVFEEIRK-NDPYRLDDMDLYSNVLY 307 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccC--CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHh-cCCCcchhHHHHhHHHH
Confidence 34455555556677777777777777 4 77777777777777777777777777777776 4443
Q ss_pred --------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHH
Q 003047 391 --------------------ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCG 450 (854)
Q Consensus 391 --------------------~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG 450 (854)
..+..-.-+|++|.-.+++++|+.||++||++ ++....+|--+|
T Consensus 308 v~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL----------------Np~~~~aWTLmG 371 (559)
T KOG1155|consen 308 VKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL----------------NPKYLSAWTLMG 371 (559)
T ss_pred HHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc----------------CcchhHHHHHhh
Confidence 11112223688898899999999999999999 345568899999
Q ss_pred HHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCC
Q 003047 451 LQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKN 530 (854)
Q Consensus 451 ~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~ 530 (854)
.-|+.+++...|+++|++|++++|.+.++|+-||+.|-.. .
T Consensus 372 HEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim-~-------------------------------------- 412 (559)
T KOG1155|consen 372 HEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIM-K-------------------------------------- 412 (559)
T ss_pred HHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHh-c--------------------------------------
Confidence 9999999999999999999999999999999999987720 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCccccccccccccccccccccccccccc
Q 003047 531 GHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSK 610 (854)
Q Consensus 531 ~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (854)
....|.-.|++|+.+.|.+.
T Consensus 413 ---------------------Mh~YaLyYfqkA~~~kPnDs--------------------------------------- 432 (559)
T KOG1155|consen 413 ---------------------MHFYALYYFQKALELKPNDS--------------------------------------- 432 (559)
T ss_pred ---------------------chHHHHHHHHHHHhcCCCch---------------------------------------
Confidence 12569999999999999954
Q ss_pred ccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCh
Q 003047 611 ISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCS 689 (854)
Q Consensus 611 ~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~ 689 (854)
.+|..||-+|..+++.++|+.++++++. .....
T Consensus 433 ----------------------------------------------Rlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~ 466 (559)
T KOG1155|consen 433 ----------------------------------------------RLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG 466 (559)
T ss_pred ----------------------------------------------HHHHHHHHHHHHhccHHHHHHHHHHHHhccccch
Confidence 2366789999999999999999999998 44467
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCC
Q 003047 690 RIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTM 769 (854)
Q Consensus 690 ~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~ 769 (854)
.++..||.+|. .+++.++|..++.+.+... . .++ ..+|
T Consensus 467 ~~l~~LakLye-----~l~d~~eAa~~yek~v~~~-~--------------------~eg------------~~~~---- 504 (559)
T KOG1155|consen 467 SALVRLAKLYE-----ELKDLNEAAQYYEKYVEVS-E--------------------LEG------------EIDD---- 504 (559)
T ss_pred HHHHHHHHHHH-----HHHhHHHHHHHHHHHHHHH-H--------------------hhc------------ccch----
Confidence 88988888777 6899999999999999310 0 000 0011
Q ss_pred CCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003047 770 FPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILP 809 (854)
Q Consensus 770 p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P 809 (854)
..-.+.++ ||.-+...+++++|.....+++.-.|
T Consensus 505 ----~t~ka~~f--LA~~f~k~~~~~~As~Ya~~~~~~~~ 538 (559)
T KOG1155|consen 505 ----ETIKARLF--LAEYFKKMKDFDEASYYATLVLKGET 538 (559)
T ss_pred ----HHHHHHHH--HHHHHHhhcchHHHHHHHHHHhcCCc
Confidence 11245666 99999999999999998888876543
No 27
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.1e-16 Score=182.25 Aligned_cols=134 Identities=11% Similarity=0.038 Sum_probs=85.4
Q ss_pred HHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCcc--HHHHHHHHHHHHHcCC
Q 003047 331 LLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGIS--SMFNNNLGCIYYQLAK 408 (854)
Q Consensus 331 yl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~--a~~~nnLG~iy~~~g~ 408 (854)
.+.+=+.++|+..+.++.... ++-...+.++|..||.+++|++|.++|+.+-+ .+|-.. -++| ..++.-++
T Consensus 329 ~~s~y~~~~A~~~~~klp~h~--~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~-~~p~rv~~meiy---ST~LWHLq- 401 (638)
T KOG1126|consen 329 SLSQYNCREALNLFEKLPSHH--YNTGWVLSQLGRAYFELIEYDQAERIFSLVRR-IEPYRVKGMEIY---STTLWHLQ- 401 (638)
T ss_pred HHHHHHHHHHHHHHHhhHHhc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccccccchhHH---HHHHHHHH-
Confidence 334446778888888876666 88888888899999999999999999998887 455211 1111 11111111
Q ss_pred HHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 003047 409 YHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAEC 486 (854)
Q Consensus 409 ~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~ 486 (854)
-+-++.++-+-|-.. .+..++.|--+|+||..+++++.|++||++|++++|++..+|.-+|.=
T Consensus 402 ~~v~Ls~Laq~Li~~---------------~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE 464 (638)
T KOG1126|consen 402 DEVALSYLAQDLIDT---------------DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHE 464 (638)
T ss_pred hhHHHHHHHHHHHhh---------------CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCCh
Confidence 133444444433320 123456777777777777777777777777777777777777766643
No 28
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2.2e-14 Score=157.38 Aligned_cols=367 Identities=17% Similarity=0.110 Sum_probs=265.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 003047 29 TLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGG 108 (854)
Q Consensus 29 ~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 108 (854)
-|+..|+...+.|..+.|++.|.++...-|-.=.+|-.|+.+ +++ .. .+..+-...
T Consensus 166 llYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~l------it~-~e---~~~~l~~~l-------------- 221 (559)
T KOG1155|consen 166 LLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSEL------ITD-IE---ILSILVVGL-------------- 221 (559)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHh------hch-HH---HHHHHHhcC--------------
Confidence 367889999999999999999999999999988888877754 111 11 111110000
Q ss_pred CCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHH
Q 003047 109 GNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQIC 188 (854)
Q Consensus 109 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~ 188 (854)
..| ..=---.-++.+|..+++.++++.-++++....-+...+ +-
T Consensus 222 ------------------------------~~~--~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~----i~ 265 (559)
T KOG1155|consen 222 ------------------------------PSD--MHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMY----IK 265 (559)
T ss_pred ------------------------------ccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHH----HH
Confidence 000 011112245888999999999999999999864454443 33
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhh
Q 003047 189 LLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALS 268 (854)
Q Consensus 189 l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (854)
...+.++....++|+|+++ ||..+.- +|.+
T Consensus 266 ~~~A~~~y~~rDfD~a~s~---Feei~kn----DPYR------------------------------------------- 295 (559)
T KOG1155|consen 266 TQIAAASYNQRDFDQAESV---FEEIRKN----DPYR------------------------------------------- 295 (559)
T ss_pred HHHHHHHhhhhhHHHHHHH---HHHHHhc----CCCc-------------------------------------------
Confidence 4457888889999999864 4544321 1111
Q ss_pred hhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 003047 269 RTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAM 348 (854)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al 348 (854)
++ .+.+|-.-+|+...+-+-+. -...+.
T Consensus 296 ------------------l~---------------------------------dmdlySN~LYv~~~~skLs~-LA~~v~ 323 (559)
T KOG1155|consen 296 ------------------LD---------------------------------DMDLYSNVLYVKNDKSKLSY-LAQNVS 323 (559)
T ss_pred ------------------ch---------------------------------hHHHHhHHHHHHhhhHHHHH-HHHHHH
Confidence 00 01111122333332222111 123445
Q ss_pred HhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhccc
Q 003047 349 NIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRK 428 (854)
Q Consensus 349 ~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~ 428 (854)
+++ .=-++..-.+|+.|-.+++++||+.+|+++++ .+|. ...+|.-||.-|..|++-..|+..|++|+.+
T Consensus 324 ~id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk-LNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi------ 393 (559)
T KOG1155|consen 324 NID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALK-LNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDI------ 393 (559)
T ss_pred Hhc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHh-cCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhc------
Confidence 555 44556677889999999999999999999999 7995 5779999999999999999999999999999
Q ss_pred CCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCccc
Q 003047 429 DKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEV 508 (854)
Q Consensus 429 ~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~ 508 (854)
+|.+..+||.||-+|..++.+.=|+-+|++|+.+.|++++.|..||+||-.++
T Consensus 394 ----------~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~----------------- 446 (559)
T KOG1155|consen 394 ----------NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLN----------------- 446 (559)
T ss_pred ----------CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhc-----------------
Confidence 56788999999999999999999999999999999999999999999997211
Q ss_pred ceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCccccc
Q 003047 509 KVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEES 588 (854)
Q Consensus 509 ~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~ 588 (854)
.+++|++||.+|+.+... .
T Consensus 447 -------------------------------------------~~~eAiKCykrai~~~dt-e----------------- 465 (559)
T KOG1155|consen 447 -------------------------------------------RLEEAIKCYKRAILLGDT-E----------------- 465 (559)
T ss_pred -------------------------------------------cHHHHHHHHHHHHhcccc-c-----------------
Confidence 247899999999876554 1
Q ss_pred ccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHH
Q 003047 589 ESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELE 668 (854)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~ 668 (854)
| ++|..||-.|-+
T Consensus 466 ---------------------------------~----------------------------------~~l~~LakLye~ 478 (559)
T KOG1155|consen 466 ---------------------------------G----------------------------------SALVRLAKLYEE 478 (559)
T ss_pred ---------------------------------h----------------------------------HHHHHHHHHHHH
Confidence 1 457788999999
Q ss_pred cCCHHHHHHHHHHHHcC---CCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhc
Q 003047 669 MENPVKALAAARSLLEL---PDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLS 722 (854)
Q Consensus 669 lg~~~~Al~~~~~lL~~---p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~ 722 (854)
++|..+|..++.+-++. .........-+.+.+|+=....+++++|-.+....+.
T Consensus 479 l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 479 LKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 99999999999986641 1222223334445555566789999999999998884
No 29
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=4.2e-14 Score=158.59 Aligned_cols=99 Identities=22% Similarity=0.297 Sum_probs=81.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHc-CCC-------ChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCC
Q 003047 661 NLAYVELEMENPVKALAAARSLLE-LPD-------CSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFS 732 (854)
Q Consensus 661 ~la~v~l~lg~~~~Al~~~~~lL~-~p~-------~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~ 732 (854)
-+|.|...-+.|.+|+.+++.+|+ .+. -.+.+.+|||+|. .+++++||+.++++++. +
T Consensus 419 Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R-----kl~~~~eAI~~~q~aL~--l------- 484 (611)
T KOG1173|consen 419 ELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR-----KLNKYEEAIDYYQKALL--L------- 484 (611)
T ss_pred hhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH-----HHhhHHHHHHHHHHHHH--c-------
Confidence 446788889999999999999883 221 2356899999665 79999999999999993 2
Q ss_pred chhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 003047 733 GEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRST 812 (854)
Q Consensus 733 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~ 812 (854)
.|. .+..|..+|.+|..+|+++.|+..|++||.+.|++.
T Consensus 485 -------------------------------~~k----------~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~ 523 (611)
T KOG1173|consen 485 -------------------------------SPK----------DASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNI 523 (611)
T ss_pred -------------------------------CCC----------chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH
Confidence 133 577888999999999999999999999999999994
Q ss_pred HH
Q 003047 813 EA 814 (854)
Q Consensus 813 ~a 814 (854)
.+
T Consensus 524 ~~ 525 (611)
T KOG1173|consen 524 FI 525 (611)
T ss_pred HH
Confidence 43
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.70 E-value=4e-13 Score=164.02 Aligned_cols=443 Identities=11% Similarity=-0.045 Sum_probs=292.6
Q ss_pred chhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhccccc
Q 003047 142 EFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVN 221 (854)
Q Consensus 142 ~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~ 221 (854)
-|..+...|..|++.+++|+|++|++.|+++++.. |.... ....++.++...|+.++|+ .++++++...
T Consensus 30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-P~~~~----av~dll~l~~~~G~~~~A~---~~~eka~~p~--- 98 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG-PLQSG----QVDDWLQIAGWAGRDQEVI---DVYERYQSSM--- 98 (822)
T ss_pred CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-ccchh----hHHHHHHHHHHcCCcHHHH---HHHHHhccCC---
Confidence 34566689999999999999999999999999943 33321 1226778888899999998 5778876110
Q ss_pred CCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCc
Q 003047 222 QVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLS 301 (854)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (854)
+. ..
T Consensus 99 -n~------------------------------~~--------------------------------------------- 102 (822)
T PRK14574 99 -NI------------------------------SS--------------------------------------------- 102 (822)
T ss_pred -CC------------------------------CH---------------------------------------------
Confidence 00 00
Q ss_pred cchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 003047 302 SNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLL 381 (854)
Q Consensus 302 ~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~ 381 (854)
....-.+++|..+|++++|++.++++++.+ |+++.+++.++.++...+++++|++.++
T Consensus 103 --------------------~~llalA~ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~ 160 (822)
T PRK14574 103 --------------------RGLASAARAYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQAT 160 (822)
T ss_pred --------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 011113678899999999999999999999 9999999999999999999999999999
Q ss_pred HhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHH
Q 003047 382 ALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVL 461 (854)
Q Consensus 382 kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~ee 461 (854)
++.+ .+|. ... +..++.++..++++.+|++.|++++.. .|.+.++++.+..++...|-...
T Consensus 161 ~l~~-~dp~-~~~-~l~layL~~~~~~~~~AL~~~ekll~~----------------~P~n~e~~~~~~~~l~~~~~~~~ 221 (822)
T PRK14574 161 ELAE-RDPT-VQN-YMTLSYLNRATDRNYDALQASSEAVRL----------------APTSEEVLKNHLEILQRNRIVEP 221 (822)
T ss_pred Hhcc-cCcc-hHH-HHHHHHHHHhcchHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCcHH
Confidence 9999 7884 333 344666777788888899999999998 34567888899999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCC
Q 003047 462 AARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDS 541 (854)
Q Consensus 462 Al~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~ 541 (854)
|++...+--.++-..-..|+....+... -+..... .. .....+
T Consensus 222 a~~l~~~~p~~f~~~~~~~l~~~~~a~~-vr~a~~~---------------------------~~-~~~~r~-------- 264 (822)
T PRK14574 222 ALRLAKENPNLVSAEHYRQLERDAAAEQ-VRMAVLP---------------------------TR-SETERF-------- 264 (822)
T ss_pred HHHHHHhCccccCHHHHHHHHHHHHHHH-Hhhcccc---------------------------cc-cchhhH--------
Confidence 9977665333333333344444333221 1110000 00 000000
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccC
Q 003047 542 SLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTAN 621 (854)
Q Consensus 542 ~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (854)
..++.|...+++.+..-|..+++.+ .++.+.- . .+..+..-
T Consensus 265 ---------~~~d~ala~~~~l~~~~~~~p~~~~-------------------~~~~~~~----------D-rl~aL~~r 305 (822)
T PRK14574 265 ---------DIADKALADYQNLLTRWGKDPEAQA-------------------DYQRARI----------D-RLGALLVR 305 (822)
T ss_pred ---------HHHHHHHHHHHHHHhhccCCCccch-------------------HHHHHHH----------H-HHHHHHHh
Confidence 1246677777777775555443210 0000000 0 00000011
Q ss_pred CCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC-C---Ch-HHHHHHH
Q 003047 622 GDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLELP-D---CS-RIYIFLG 696 (854)
Q Consensus 622 gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~~p-~---~~-~~~~~la 696 (854)
+. ..+++ .-+..|.... ..+=..+....|-.|+.++.|.+|+..+++++..+ + .+ +.....+
T Consensus 306 ~r--------~~~vi----~~y~~l~~~~-~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~ 372 (822)
T PRK14574 306 HQ--------TADLI----KEYEAMEAEG-YKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADD 372 (822)
T ss_pred hh--------HHHHH----HHHHHhhhcC-CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHH
Confidence 11 11122 1222222111 01112455667899999999999999999998743 2 11 1211222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhh
Q 003047 697 HIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEA 776 (854)
Q Consensus 697 ~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a 776 (854)
. ..|++..+++++|..+++..... . |+. -.++ ++++.+..|.
T Consensus 373 L---~yA~ld~e~~~~A~~~l~~~~~~--~---p~~-----------~~~~---------~~~~~~pn~d---------- 414 (822)
T PRK14574 373 L---YYSLNESEQLDKAYQFAVNYSEQ--T---PYQ-----------VGVY---------GLPGKEPNDD---------- 414 (822)
T ss_pred H---HHHHHhcccHHHHHHHHHHHHhc--C---CcE-----------Eecc---------CCCCCCCCcc----------
Confidence 2 33688999999999999998831 1 100 0011 1111111121
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 003047 777 RGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKYCN 839 (854)
Q Consensus 777 ~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~~~ 839 (854)
-...+..++.++.-.|++++|++.++..+..-|.++.+++.++-++...|++.+|.+.++...
T Consensus 415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~ 477 (822)
T PRK14574 415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVE 477 (822)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 567788899999999999999999999999999999999999999999999999999998833
No 31
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.69 E-value=5.4e-15 Score=161.95 Aligned_cols=102 Identities=12% Similarity=0.000 Sum_probs=66.3
Q ss_pred cCHHHHHHHHHHhhhc--cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHH
Q 003047 371 RNHRKAIKLLLALSNR--TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYN 448 (854)
Q Consensus 371 g~~~kAl~~l~kal~~--~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~n 448 (854)
+..+.++..+.+++.. .+|...+.+|+++|.+|..+|++++|+..|+++++. .|..+.+|++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l----------------~P~~~~a~~~ 103 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL----------------RPDMADAYNY 103 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----------------CCCCHHHHHH
Confidence 3455566666666641 233233556666777777777777777777777776 2344566777
Q ss_pred HHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 449 CGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 449 LG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
+|.++...|++++|+.+|+++++++|+++.+|.++|.++.
T Consensus 104 lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 104 LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777776665
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.68 E-value=2.9e-13 Score=158.61 Aligned_cols=362 Identities=15% Similarity=0.093 Sum_probs=190.6
Q ss_pred CcchhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHH
Q 003047 18 EDDSGVLSVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEEL 97 (854)
Q Consensus 18 ~~~~~~~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 97 (854)
-+++-+....+.|+.+|...|-.|++++|..++.++...+|.++.+++-||.+|--+++ ..+++.....+.
T Consensus 130 r~~~~l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd------~eK~l~~~llAA--- 200 (895)
T KOG2076|consen 130 RGKSKLAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGD------IEKALNFWLLAA--- 200 (895)
T ss_pred CcccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHccc------HHHHHHHHHHHH---
Confidence 34455555699999999999999999999999999999999999999999988765543 233444333332
Q ss_pred HhhhcccCCCC-------CCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHH
Q 003047 98 ARATGEQTEGG-------GNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLE 170 (854)
Q Consensus 98 ~~~~~~~~~~~-------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e 170 (854)
|.+..+.+-= -..|+.. .+...+ + -.+.. +|++-.+.|+.+.+|.+.|++..|...|+
T Consensus 201 -HL~p~d~e~W~~ladls~~~~~i~------qA~~cy--~-----rAI~~-~p~n~~~~~ers~L~~~~G~~~~Am~~f~ 265 (895)
T KOG2076|consen 201 -HLNPKDYELWKRLADLSEQLGNIN------QARYCY--S-----RAIQA-NPSNWELIYERSSLYQKTGDLKRAMETFL 265 (895)
T ss_pred -hcCCCChHHHHHHHHHHHhcccHH------HHHHHH--H-----HHHhc-CCcchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 1111100000 0000000 000000 0 00112 45555566667777777777777777777
Q ss_pred HhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccc
Q 003047 171 PLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTAD 250 (854)
Q Consensus 171 ~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (854)
+++...++.+-..........+..++..++-..|+ +.+|.++..... . -+.+
T Consensus 266 ~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~---~~le~~~s~~~~----~-----------------~~~e---- 317 (895)
T KOG2076|consen 266 QLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA---KALEGALSKEKD----E-----------------ASLE---- 317 (895)
T ss_pred HHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHhhccc----c-----------------cccc----
Confidence 77776665444333333444456666666666665 455655542200 0 0000
Q ss_pred cccchhhhhhhhhhhhhh---hhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhccc-------chhHHH
Q 003047 251 ASNSDLAATVNASENALS---RTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSI-------STVDLK 320 (854)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~~~~~~ 320 (854)
+.+ +-...-... ..-+..+.++..- +.+.+...| .++..+.. -+.+..
T Consensus 318 ----d~n--i~ael~l~~~q~d~~~~~i~~~~~r----~~e~d~~e~------------~~~~~~~~~~~~~~~~~~~~s 375 (895)
T KOG2076|consen 318 ----DLN--ILAELFLKNKQSDKALMKIVDDRNR----ESEKDDSEW------------DTDERRREEPNALCEVGKELS 375 (895)
T ss_pred ----HHH--HHHHHHHHhHHHHHhhHHHHHHhcc----ccCCChhhh------------hhhhhccccccccccCCCCCC
Confidence 000 000000000 0000111111110 000000000 00000000 001111
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHH
Q 003047 321 LKLQLYKVRFLLLTRNLKHAKREVKLAMNIAR--GKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNN 398 (854)
Q Consensus 321 ~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~--~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nn 398 (854)
-.|.++|..+.+..=+..+..+.+...+-... ..+.++-++.++..++..|+|++|+++|..+.. .++..++.+|..
T Consensus 376 ~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~-~~~~~~~~vw~~ 454 (895)
T KOG2076|consen 376 YDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN-REGYQNAFVWYK 454 (895)
T ss_pred ccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc-CccccchhhhHH
Confidence 12333333333333232333333333332221 024455667778888888888888888887777 555556677777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Q 003047 399 LGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSS 470 (854)
Q Consensus 399 LG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL 470 (854)
+|.+|..+|.+++|+++|.++|.. .|.+..+-..|+..+.++|++++|++.+.+..
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~~----------------~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLIL----------------APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhc----------------CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 888888888888888888888877 23445566677788888888888887777766
No 33
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=2.1e-14 Score=160.95 Aligned_cols=292 Identities=21% Similarity=0.155 Sum_probs=231.1
Q ss_pred CcchhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHHHH
Q 003047 18 EDDSGVLSVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKIL-HNIAIAEYFRDGCTDPKKLLEALNNVKNKSEE 96 (854)
Q Consensus 18 ~~~~~~~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l-~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 96 (854)
+..-|+..-++=+..+|-.+|..++|.+|++++.++++++|-++..+ ..|| +.+..++ ..+ |-.+.-.+.
T Consensus 235 ~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia-~l~el~~---~n~----Lf~lsh~LV- 305 (611)
T KOG1173|consen 235 ESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIA-CLYELGK---SNK----LFLLSHKLV- 305 (611)
T ss_pred hhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHH-HHHHhcc---cch----HHHHHHHHH-
Confidence 44556666677888999999999999999999999999999986553 4455 4443333 222 222322221
Q ss_pred HHhhhcccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcc
Q 003047 97 LARATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNI 176 (854)
Q Consensus 97 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~ 176 (854)
. +.|+.++.|+-.|..|+-.|+|++|-.+|-|....-
T Consensus 306 ------------------------------------------~-~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD 342 (611)
T KOG1173|consen 306 ------------------------------------------D-LYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD 342 (611)
T ss_pred ------------------------------------------H-hCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence 1 368899999999999999999999999999999843
Q ss_pred CCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchh
Q 003047 177 EPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDL 256 (854)
Q Consensus 177 ~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (854)
+ ..+. .++-++..|-..++-++|+..| -++-.+. +..
T Consensus 343 ~----~fgp-aWl~fghsfa~e~EhdQAmaaY---~tAarl~----~G~------------------------------- 379 (611)
T KOG1173|consen 343 P----TFGP-AWLAFGHSFAGEGEHDQAMAAY---FTAARLM----PGC------------------------------- 379 (611)
T ss_pred c----cccH-HHHHHhHHhhhcchHHHHHHHH---HHHHHhc----cCC-------------------------------
Confidence 3 3332 5777899999999999998644 3333232 000
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcC
Q 003047 257 AATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRN 336 (854)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~ 336 (854)
.+ -.+|-+.-|.++++
T Consensus 380 -----------------------------hl-----------------------------------P~LYlgmey~~t~n 395 (611)
T KOG1173|consen 380 -----------------------------HL-----------------------------------PSLYLGMEYMRTNN 395 (611)
T ss_pred -----------------------------cc-----------------------------------hHHHHHHHHHHhcc
Confidence 01 12344556778999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc---c--CCCccHHHHHHHHHHHHHcCCHHH
Q 003047 337 LKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNR---T--EMGISSMFNNNLGCIYYQLAKYHT 411 (854)
Q Consensus 337 ~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~---~--dp~~~a~~~nnLG~iy~~~g~~~e 411 (854)
++-|.+-+..++.+. |.++-.+..+|.+.+..+.|.+|+++|+.++.. . +...+...++|||.+|.+++++++
T Consensus 396 ~kLAe~Ff~~A~ai~--P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 396 LKLAEKFFKQALAIA--PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred HHHHHHHHHHHHhcC--CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 999999999999999 999999999999999999999999999999942 1 111366789999999999999999
Q ss_pred HHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 003047 412 SSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAEC 486 (854)
Q Consensus 412 Ai~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~ 486 (854)
||.+|+++|.. .+.++.++-.+|.+|..+|+++.|++.|.++|.+.|++..+-.-|+.+
T Consensus 474 AI~~~q~aL~l----------------~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 474 AIDYYQKALLL----------------SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHc----------------CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 99999999998 456788999999999999999999999999999999998877767644
No 34
>PRK12370 invasion protein regulator; Provisional
Probab=99.66 E-value=5.2e-14 Score=167.11 Aligned_cols=110 Identities=15% Similarity=0.060 Sum_probs=63.5
Q ss_pred HHHHHHHHH---hcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhchhccc
Q 003047 361 FLKSQLEYA---RRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQL---------AKYHTSSVFLSKALSNSASLRK 428 (854)
Q Consensus 361 ~lla~ly~~---~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~---------g~~~eAi~~f~kAL~~~~~l~~ 428 (854)
++.|..++. .+.+++|+.+|++++. .+|+ .+.+|.++|.+|..+ +++++|+.++++|+++
T Consensus 262 ~lrg~~~~~~~~~~~~~~A~~~~~~Al~-ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l------ 333 (553)
T PRK12370 262 YLRGKHELNQYTPYSLQQALKLLTQCVN-MSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL------ 333 (553)
T ss_pred HHHhHHHHHccCHHHHHHHHHHHHHHHh-cCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc------
Confidence 444544432 2345566666666666 5663 455566666655432 2256666666666665
Q ss_pred CCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 429 DKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 429 ~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
.|.+..++..+|.++...|++++|+.+|+++++++|+++.+|+.+|.++.
T Consensus 334 ----------dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~ 383 (553)
T PRK12370 334 ----------DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLF 383 (553)
T ss_pred ----------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 23345566666666666666666666666666666666666666666655
No 35
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.66 E-value=1e-12 Score=160.43 Aligned_cols=452 Identities=10% Similarity=-0.008 Sum_probs=294.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCC
Q 003047 34 AALYFQSRKFDECLDLLKQLLDKKPD--DPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGNI 111 (854)
Q Consensus 34 a~~~~~~g~y~~Al~~l~~~l~~~~~--~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 111 (854)
-..+...|++++|+++|+.+....+. |..++..+..+....+. +. ....+...+...
T Consensus 94 i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~------~~-~a~~l~~~m~~~-------------- 152 (697)
T PLN03081 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKS------IR-CVKAVYWHVESS-------------- 152 (697)
T ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC------HH-HHHHHHHHHHHh--------------
Confidence 34456789999999999999875433 56666666555332221 11 222233333110
Q ss_pred CCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHH
Q 003047 112 GSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLL 191 (854)
Q Consensus 112 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l 191 (854)
.. .+ +...+..+..+|.+.|++++|.++|+++.. + +. ..+..+
T Consensus 153 ---------------------------g~-~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~-~~----~t~n~l 195 (697)
T PLN03081 153 ---------------------------GF-EP-DQYMMNRVLLMHVKCGMLIDARRLFDEMPE---R-NL----ASWGTI 195 (697)
T ss_pred ---------------------------CC-Cc-chHHHHHHHHHHhcCCCHHHHHHHHhcCCC---C-Ce----eeHHHH
Confidence 01 23 355777788999999999999999988754 1 22 246678
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhh
Q 003047 192 LDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTL 271 (854)
Q Consensus 192 ~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (854)
+..|...|++++|+.++..+. ..... ++. . +.+....... ..
T Consensus 196 i~~~~~~g~~~~A~~lf~~M~---~~g~~--p~~-------------------------------~-t~~~ll~a~~-~~ 237 (697)
T PLN03081 196 IGGLVDAGNYREAFALFREMW---EDGSD--AEP-------------------------------R-TFVVMLRASA-GL 237 (697)
T ss_pred HHHHHHCcCHHHHHHHHHHHH---HhCCC--CCh-------------------------------h-hHHHHHHHHh-cC
Confidence 899999999999997665444 22200 110 0 0000000000 00
Q ss_pred h--hhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 003047 272 S--EETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMN 349 (854)
Q Consensus 272 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~ 349 (854)
+ +......... . ..+ ..+...-+.. -...|...|++++|.+-++..
T Consensus 238 ~~~~~~~~l~~~~----~---~~g------------------~~~d~~~~n~-----Li~~y~k~g~~~~A~~vf~~m-- 285 (697)
T PLN03081 238 GSARAGQQLHCCV----L---KTG------------------VVGDTFVSCA-----LIDMYSKCGDIEDARCVFDGM-- 285 (697)
T ss_pred CcHHHHHHHHHHH----H---HhC------------------CCccceeHHH-----HHHHHHHCCCHHHHHHHHHhC--
Confidence 0 0000000000 0 000 0000001111 145677888999888887654
Q ss_pred hcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhccc
Q 003047 350 IARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNR-TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRK 428 (854)
Q Consensus 350 ~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~-~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~ 428 (854)
. +.+...|..+...|...|++++|+++|.+.... ..| +...|+.+...|.+.|++++|...+.+.++.-
T Consensus 286 -~--~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p--d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g----- 355 (697)
T PLN03081 286 -P--EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI--DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG----- 355 (697)
T ss_pred -C--CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhccchHHHHHHHHHHHHhC-----
Confidence 4 567788888888999999999999999888663 345 35678888889999999999999988888751
Q ss_pred CCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCccc
Q 003047 429 DKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEV 508 (854)
Q Consensus 429 ~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~ 508 (854)
.+++..++..+...|.+.|+.++|.+.|++..+ | +...|..|...|. +.+
T Consensus 356 ----------~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~---~~G-------------- 405 (697)
T PLN03081 356 ----------FPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--K-NLISWNALIAGYG---NHG-------------- 405 (697)
T ss_pred ----------CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHH---HcC--------------
Confidence 123455677788899999999999999988653 3 4567888887776 210
Q ss_pred ceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCccccc
Q 003047 509 KVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEES 588 (854)
Q Consensus 509 ~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~ 588 (854)
..++|...|++.+...-.+..
T Consensus 406 -------------------------------------------~~~~A~~lf~~M~~~g~~Pd~---------------- 426 (697)
T PLN03081 406 -------------------------------------------RGTKAVEMFERMIAEGVAPNH---------------- 426 (697)
T ss_pred -------------------------------------------CHHHHHHHHHHHHHhCCCCCH----------------
Confidence 136688888876643221100
Q ss_pred ccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHH
Q 003047 589 ESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELE 668 (854)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~ 668 (854)
..+..+-.++..
T Consensus 427 --------------------------------------------------------------------~T~~~ll~a~~~ 438 (697)
T PLN03081 427 --------------------------------------------------------------------VTFLAVLSACRY 438 (697)
T ss_pred --------------------------------------------------------------------HHHHHHHHHHhc
Confidence 112233445778
Q ss_pred cCCHHHHHHHHHHHHcC---CCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhh
Q 003047 669 MENPVKALAAARSLLEL---PDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKII 745 (854)
Q Consensus 669 lg~~~~Al~~~~~lL~~---p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 745 (854)
.|+..+|..+++.+.+. .+....|..+.. +|+..|+++||.+.++..- .
T Consensus 439 ~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~-----~l~r~G~~~eA~~~~~~~~--~--------------------- 490 (697)
T PLN03081 439 SGLSEQGWEIFQSMSENHRIKPRAMHYACMIE-----LLGREGLLDEAYAMIRRAP--F--------------------- 490 (697)
T ss_pred CCcHHHHHHHHHHHHHhcCCCCCccchHhHHH-----HHHhcCCHHHHHHHHHHCC--C---------------------
Confidence 89999999999998852 233445655554 5678999999998876432 0
Q ss_pred hhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 003047 746 DCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLML 825 (854)
Q Consensus 746 d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~ 825 (854)
.| .+..|..|-.+++..|+++.|+..+++.+.+.|++......++.++.+.
T Consensus 491 ------------------~p-----------~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~ 541 (697)
T PLN03081 491 ------------------KP-----------TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSS 541 (697)
T ss_pred ------------------CC-----------CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhC
Confidence 13 3567888999999999999999999999999998765556666677799
Q ss_pred CCHHHHHHHHHh
Q 003047 826 GKSQEALAKLKY 837 (854)
Q Consensus 826 G~~~eA~~~lk~ 837 (854)
|++++|.++++.
T Consensus 542 G~~~~A~~v~~~ 553 (697)
T PLN03081 542 GRQAEAAKVVET 553 (697)
T ss_pred CCHHHHHHHHHH
Confidence 999999999987
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.65 E-value=1.6e-13 Score=160.88 Aligned_cols=351 Identities=17% Similarity=0.167 Sum_probs=236.3
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcC
Q 003047 328 VRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLA 407 (854)
Q Consensus 328 ~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g 407 (854)
+....-.|++++|.+-+..+|..+ |.++.+++.+|.+|-++|+.+||+.+...+-- .+|.+ ...|..++....++|
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH-L~p~d-~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH-LNPKD-YELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHh-cCCCC-hHHHHHHHHHHHhcc
Confidence 445556699999999999999999 99999999999999999999999999988887 78865 479999999999999
Q ss_pred CHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHH-H----H
Q 003047 408 KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLW-L----R 482 (854)
Q Consensus 408 ~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw-~----~ 482 (854)
.+++|+-||.||++. .|++.+..++....|.++|++..|.++|.+++.+.|..-.-| . .
T Consensus 222 ~i~qA~~cy~rAI~~----------------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~ 285 (895)
T KOG2076|consen 222 NINQARYCYSRAIQA----------------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRR 285 (895)
T ss_pred cHHHHHHHHHHHHhc----------------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHH
Confidence 999999999999998 456678889999999999999999999999999999211111 1 1
Q ss_pred HHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccC-CcCCCCCCCCCCCCCCCCCCCCCC----CChHHHH
Q 003047 483 LAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDG-FRKNGHVDSPEKDDSSLGSDGQPK----LSMPLAR 557 (854)
Q Consensus 483 La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~-~~~~~~~~~~~g~~~~~~~~~~~~----~sl~~A~ 557 (854)
.+..++..... +....++ ... ...... +..+. ..+--..
T Consensus 286 ~~~~~~~~~~~-------------e~a~~~l----------e~~~s~~~~~-------------~~~ed~ni~ael~l~~ 329 (895)
T KOG2076|consen 286 VAHYFITHNER-------------ERAAKAL----------EGALSKEKDE-------------ASLEDLNILAELFLKN 329 (895)
T ss_pred HHHHHHHhhHH-------------HHHHHHH----------HHHHhhcccc-------------ccccHHHHHHHHHHHh
Confidence 12222211110 0000000 000 000001 11111 1122223
Q ss_pred HHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHh
Q 003047 558 QCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQ 637 (854)
Q Consensus 558 ~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~ 637 (854)
..+++|+...-....- ..+ .+.+. .-|--.+ . ..+. ..+- +.
T Consensus 330 ~q~d~~~~~i~~~~~r----------~~e--~d~~e--~~~~~~~-~----~~~~-~~~~------------------~~ 371 (895)
T KOG2076|consen 330 KQSDKALMKIVDDRNR----------ESE--KDDSE--WDTDERR-R----EEPN-ALCE------------------VG 371 (895)
T ss_pred HHHHHhhHHHHHHhcc----------ccC--CChhh--hhhhhhc-c----cccc-cccc------------------CC
Confidence 3333333332221100 000 00000 0000000 0 0000 0000 00
Q ss_pred hhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc--CCCChHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 003047 638 NSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE--LPDCSRIYIFLGHIYAAEALCLLNRPKEAAE 715 (854)
Q Consensus 638 ~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~--~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~ 715 (854)
.-+++..++ +...++.+++..++..+++.++-..-. -.+..+-|.- .++||+..|++.+|+.
T Consensus 372 ~~~s~~l~v-----------~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d-----~a~al~~~~~~~~Al~ 435 (895)
T KOG2076|consen 372 KELSYDLRV-----------IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLD-----LADALTNIGKYKEALR 435 (895)
T ss_pred CCCCccchh-----------HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHH-----HHHHHHhcccHHHHHH
Confidence 112233222 355668899999999999998865444 2234555644 4568889999999999
Q ss_pred HHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHH
Q 003047 716 HFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFE 795 (854)
Q Consensus 716 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e 795 (854)
+|.+.+..+. -+ ++.+|+++|.+|..+|.++
T Consensus 436 ~l~~i~~~~~---------------------------------------~~----------~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 436 LLSPITNREG---------------------------------------YQ----------NAFVWYKLARCYMELGEYE 466 (895)
T ss_pred HHHHHhcCcc---------------------------------------cc----------chhhhHHHHHHHHHHhhHH
Confidence 9999993110 01 5788999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003047 796 RAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKY 837 (854)
Q Consensus 796 ~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~ 837 (854)
+|.++|.+++...|++..+...+.-++.++|+.++|+++|..
T Consensus 467 ~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 999999999999999999999999999999999999999987
No 37
>PRK12370 invasion protein regulator; Provisional
Probab=99.63 E-value=1.6e-13 Score=162.96 Aligned_cols=272 Identities=12% Similarity=0.033 Sum_probs=206.9
Q ss_pred HHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC---CChhHHHHHHHHHHHHHHHHHh
Q 003047 26 VTATLAKEAALYFQS---RKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGC---TDPKKLLEALNNVKNKSEELAR 99 (854)
Q Consensus 26 ~~~~l~~~a~~~~~~---g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 99 (854)
.+-.++.+|..++.. +.+++|+++|+++++++|+++.++.++|.++...... ....++.+++..++++++
T Consensus 257 da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~---- 332 (553)
T PRK12370 257 DSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE---- 332 (553)
T ss_pred HHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh----
Confidence 344577788766543 5688999999999999999999999999988766442 244567778888888773
Q ss_pred hhcccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCC
Q 003047 100 ATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPI 179 (854)
Q Consensus 100 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~ 179 (854)
+ +|+++.++..+|.++...|++++|+.+|+++++..+..
T Consensus 333 ----------------------------------------l-dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~ 371 (553)
T PRK12370 333 ----------------------------------------L-DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPIS 371 (553)
T ss_pred ----------------------------------------c-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 2 67788899999999999999999999999999954332
Q ss_pred chhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhh
Q 003047 180 DETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAAT 259 (854)
Q Consensus 180 ~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (854)
.+ +++.++.+|...|++++|+ ..+++++.+. ++. .
T Consensus 372 ~~-----a~~~lg~~l~~~G~~~eAi---~~~~~Al~l~----P~~------------------------------~--- 406 (553)
T PRK12370 372 AD-----IKYYYGWNLFMAGQLEEAL---QTINECLKLD----PTR------------------------------A--- 406 (553)
T ss_pred HH-----HHHHHHHHHHHCCCHHHHH---HHHHHHHhcC----CCC------------------------------h---
Confidence 22 5778899999999999998 5778887664 110 0
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHH
Q 003047 260 VNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKH 339 (854)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~ 339 (854)
...+.+..++...|++++
T Consensus 407 --------------------------------------------------------------~~~~~~~~~~~~~g~~ee 424 (553)
T PRK12370 407 --------------------------------------------------------------AAGITKLWITYYHTGIDD 424 (553)
T ss_pred --------------------------------------------------------------hhHHHHHHHHHhccCHHH
Confidence 001112334566799999
Q ss_pred HHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003047 340 AKREVKLAMNI-ARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSK 418 (854)
Q Consensus 340 A~~elk~al~~-~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~k 418 (854)
|++.+++++.. . |+++.++..+|.++...|++++|...+.++.. ..|. ...+.+.++.+|..+| ++|...+++
T Consensus 425 A~~~~~~~l~~~~--p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g--~~a~~~l~~ 498 (553)
T PRK12370 425 AIRLGDELRSQHL--QDNPILLSMQVMFLSLKGKHELARKLTKEIST-QEIT-GLIAVNLLYAEYCQNS--ERALPTIRE 498 (553)
T ss_pred HHHHHHHHHHhcc--ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh-ccch-hHHHHHHHHHHHhccH--HHHHHHHHH
Confidence 99999999987 5 78899999999999999999999999999887 5663 5667888999999988 488888888
Q ss_pred HHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh
Q 003047 419 ALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLV 472 (854)
Q Consensus 419 AL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l 472 (854)
.++.... ...-......+|-..|+.+.|+.. +++.+-
T Consensus 499 ll~~~~~----------------~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 499 FLESEQR----------------IDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHhhH----------------hhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 7775210 011112256777778888887766 555444
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.62 E-value=2e-15 Score=163.68 Aligned_cols=263 Identities=18% Similarity=0.154 Sum_probs=109.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh-c-CCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 003047 32 KEAALYFQSRKFDECLDLLKQLLD-K-KPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGG 109 (854)
Q Consensus 32 ~~a~~~~~~g~y~~Al~~l~~~l~-~-~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 109 (854)
.-|..++..|+|++|++++++... . +|+|+..|..+|.+....++ +..++...++-+.
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~------~~~A~~ay~~l~~-------------- 72 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGD------YDEAIEAYEKLLA-------------- 72 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc------ccccccccccccc--------------
Confidence 348899999999999999977654 4 58999999888855443332 2223333333221
Q ss_pred CCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHH
Q 003047 110 NIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICL 189 (854)
Q Consensus 110 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l 189 (854)
. ++.++..+.+++.+ ...++|++|++++++.++.... .+ ...
T Consensus 73 ------------------------------~-~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~-~~-----~l~ 114 (280)
T PF13429_consen 73 ------------------------------S-DKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGD-PR-----YLL 114 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------------c-cccccccccccccc-cccccccccccccccccccccc-cc-----hhh
Confidence 1 12233455566666 7999999999999999885422 22 244
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhh
Q 003047 190 LLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSR 269 (854)
Q Consensus 190 ~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (854)
..+.+|...++++++..+++.++...... +
T Consensus 115 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~-----~--------------------------------------------- 144 (280)
T PF13429_consen 115 SALQLYYRLGDYDEAEELLEKLEELPAAP-----D--------------------------------------------- 144 (280)
T ss_dssp ---H-HHHTT-HHHHHHHHHHHHH-T--------T---------------------------------------------
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhccCCC-----C---------------------------------------------
Confidence 56788999999999997765555211000 0
Q ss_pred hhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 003047 270 TLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMN 349 (854)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~ 349 (854)
...+.+..+.+|...|+.++|++.++++++
T Consensus 145 --------------------------------------------------~~~~~~~~a~~~~~~G~~~~A~~~~~~al~ 174 (280)
T PF13429_consen 145 --------------------------------------------------SARFWLALAEIYEQLGDPDKALRDYRKALE 174 (280)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred --------------------------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 012445578899999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccC
Q 003047 350 IARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKD 429 (854)
Q Consensus 350 ~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~ 429 (854)
++ |+++.+...++.++...|+++++.+.+....+ ..|. ++.++..+|.+|..+|++++|+.+|++++..
T Consensus 175 ~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~-~~~~-~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~------- 243 (280)
T PF13429_consen 175 LD--PDDPDARNALAWLLIDMGDYDEAREALKRLLK-AAPD-DPDLWDALAAAYLQLGRYEEALEYLEKALKL------- 243 (280)
T ss_dssp H---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHH-H-HT-SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-------
T ss_pred cC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHH-HCcC-HHHHHHHHHHHhccccccccccccccccccc-------
Confidence 99 99999999999999999999998888877776 3342 3456778999999999999999999999997
Q ss_pred CccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh
Q 003047 430 KPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLV 472 (854)
Q Consensus 430 ~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l 472 (854)
.+.++..+.++|.++...|++++|.+++++++..
T Consensus 244 ---------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 244 ---------NPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp ---------STT-HHHHHHHHHHHT------------------
T ss_pred ---------cccccccccccccccccccccccccccccccccc
Confidence 3557788889999999999999999999998754
No 39
>PLN03077 Protein ECB2; Provisional
Probab=99.62 E-value=1.3e-11 Score=154.14 Aligned_cols=305 Identities=12% Similarity=0.048 Sum_probs=214.1
Q ss_pred HHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCH
Q 003047 330 FLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKY 409 (854)
Q Consensus 330 lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~ 409 (854)
.+...|++++|.+.++.+++..- ..+...+..+-..|...|++++|.++|++... + +...|+.|...|.+.|+.
T Consensus 398 a~~~~g~~~~a~~l~~~~~~~g~-~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~--d~vs~~~mi~~~~~~g~~ 471 (857)
T PLN03077 398 ACACLGDLDVGVKLHELAERKGL-ISYVVVANALIEMYSKCKCIDKALEVFHNIPE---K--DVISWTSIIAGLRLNNRC 471 (857)
T ss_pred HHhccchHHHHHHHHHHHHHhCC-CcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---C--CeeeHHHHHHHHHHCCCH
Confidence 56778999999999999988872 34566777888999999999999999998755 3 235789999999999999
Q ss_pred HHHHHHHHHHHHhch-hc-------c---c-C-----Cccc--cccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Q 003047 410 HTSSVFLSKALSNSA-SL-------R---K-D-----KPLK--LLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSS 470 (854)
Q Consensus 410 ~eAi~~f~kAL~~~~-~l-------~---~-~-----~~l~--~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL 470 (854)
++|+..|++.+.... +. . . . ..+. ........+..++..+-..|.+.|+.++|...|++.
T Consensus 472 ~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~- 550 (857)
T PLN03077 472 FEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH- 550 (857)
T ss_pred HHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-
Confidence 999999999875311 00 0 0 0 0000 000011122233445567888888899998888875
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCC
Q 003047 471 LVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPK 550 (854)
Q Consensus 471 ~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~ 550 (854)
+.+...|..|...|. +.|
T Consensus 551 ---~~d~~s~n~lI~~~~---~~G-------------------------------------------------------- 568 (857)
T PLN03077 551 ---EKDVVSWNILLTGYV---AHG-------------------------------------------------------- 568 (857)
T ss_pred ---CCChhhHHHHHHHHH---HcC--------------------------------------------------------
Confidence 566778888887776 211
Q ss_pred CChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCC
Q 003047 551 LSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGG 630 (854)
Q Consensus 551 ~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~ 630 (854)
..++|...|++.......+..
T Consensus 569 -~~~~A~~lf~~M~~~g~~Pd~---------------------------------------------------------- 589 (857)
T PLN03077 569 -KGSMAVELFNRMVESGVNPDE---------------------------------------------------------- 589 (857)
T ss_pred -CHHHHHHHHHHHHHcCCCCCc----------------------------------------------------------
Confidence 136688888877653222110
Q ss_pred chhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-C--CCChHHHHHHHHHHHHHHHHhc
Q 003047 631 TSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-L--PDCSRIYIFLGHIYAAEALCLL 707 (854)
Q Consensus 631 ~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~--p~~~~~~~~la~lY~aeAl~~l 707 (854)
..+..+-..+...|++.+|..+++.+.. . .+....|..+.. +|+..
T Consensus 590 --------------------------~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~-----~l~r~ 638 (857)
T PLN03077 590 --------------------------VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD-----LLGRA 638 (857)
T ss_pred --------------------------ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH-----HHHhC
Confidence 0011112346788999999999999883 2 344556665555 56789
Q ss_pred CCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHH
Q 003047 708 NRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAM 787 (854)
Q Consensus 708 gr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~ 787 (854)
|+++||.+.++..- . .| ++..|..|-.+
T Consensus 639 G~~~eA~~~~~~m~---~--------------------------------------~p-----------d~~~~~aLl~a 666 (857)
T PLN03077 639 GKLTEAYNFINKMP---I--------------------------------------TP-----------DPAVWGALLNA 666 (857)
T ss_pred CCHHHHHHHHHHCC---C--------------------------------------CC-----------CHHHHHHHHHH
Confidence 99999999887642 0 13 25566667777
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh--cCCCcccc
Q 003047 788 FAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKY--CNHVRFLP 845 (854)
Q Consensus 788 ~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~--~~~~~~~~ 845 (854)
+...|+.+.|+...++++++.|+++....++..++-..|++++|.++.+. .+-+..+|
T Consensus 667 c~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~ 726 (857)
T PLN03077 667 CRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDP 726 (857)
T ss_pred HHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCC
Confidence 78889999999999999999999987788888888899999999999877 44444433
No 40
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.61 E-value=1.1e-14 Score=157.04 Aligned_cols=334 Identities=14% Similarity=0.044 Sum_probs=237.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhc
Q 003047 27 TATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDP----KILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATG 102 (854)
Q Consensus 27 ~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~----~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 102 (854)
.-.|..+|.+.+..|++.+-+++|+.+++....|. .|+..||.+|||..+|.++.+|-.--..+.+.+..
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgd------ 90 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGD------ 90 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcc------
Confidence 56799999999999999999999999999988885 56788999999998877666654433344444420
Q ss_pred ccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchh
Q 003047 103 EQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDET 182 (854)
Q Consensus 103 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~ 182 (854)
....+-.--|+|+++-.+|.|++|+-+.++-+.+.+++.|.
T Consensus 91 ---------------------------------------klGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDr 131 (639)
T KOG1130|consen 91 ---------------------------------------KLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDR 131 (639)
T ss_pred ---------------------------------------hhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHH
Confidence 01122233489999999999999999999999999999988
Q ss_pred h-HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhh
Q 003047 183 T-ALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVN 261 (854)
Q Consensus 183 ~-~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (854)
. -.++++++++||...|+-..-.. .-... .. +.|. ..
T Consensus 132 v~e~RAlYNlgnvYhakGk~~g~~~-------pee~g----~f----------------------------~~ev---~~ 169 (639)
T KOG1130|consen 132 VLESRALYNLGNVYHAKGKCTGLEA-------PEEKG----AF----------------------------NAEV---TS 169 (639)
T ss_pred HhhhHHHhhhhhhhhhcccccCCCC-------hhhcc----cc----------------------------cHHH---HH
Confidence 5 56788999999999886432110 00000 00 0000 00
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhcc-ccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHH
Q 003047 262 ASENALSRTLSEETLEDDTVLALSSLEI-SGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHA 340 (854)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A 340 (854)
. =+.+++|+.-. ++. ...+..-.-|.+..|||.+|+-+ ++|..+|++.|.|+.+.+.-=+.|
T Consensus 170 a---------l~~Av~fy~eN----L~l~~~lgDr~aqGRa~GnLGNTyYlL----Gdf~~ai~~H~~RL~ia~efGDrA 232 (639)
T KOG1130|consen 170 A---------LENAVKFYMEN----LELSEKLGDRLAQGRAYGNLGNTYYLL----GDFDQAIHFHKLRLEIAQEFGDRA 232 (639)
T ss_pred H---------HHHHHHHHHHH----HHHHHHhhhHHhhcchhcccCceeeee----ccHHHHHHHHHHHHHHHHHhhhHH
Confidence 0 02334444432 221 11222233478999999999988 999999999999988875333322
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc----cCCCccHHHHHHHHHHHHHcCCHHHHHHHH
Q 003047 341 KREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNR----TEMGISSMFNNNLGCIYYQLAKYHTSSVFL 416 (854)
Q Consensus 341 ~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~----~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f 416 (854)
-+ . .++.++|+.|.-.|+++.|+++|++.+.. .+....+..-+.||..|.-.+.+++||.|+
T Consensus 233 ae-------R-------RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh 298 (639)
T KOG1130|consen 233 AE-------R-------RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYH 298 (639)
T ss_pred HH-------H-------HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 22 2 58889999999999999999999998763 222234556678999999999999999999
Q ss_pred HHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCC------CHHHHHHHHHHHH
Q 003047 417 SKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYK------QPLLWLRLAECCL 488 (854)
Q Consensus 417 ~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~------~~~aw~~La~~~i 488 (854)
.+=|.+.+.+... -....+.+.||.++..+|..+.|+.+.++.+++... ...+..+|...-.
T Consensus 299 ~rHLaIAqeL~Dr----------iGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~ 366 (639)
T KOG1130|consen 299 QRHLAIAQELEDR----------IGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLIL 366 (639)
T ss_pred HHHHHHHHHHHHh----------hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHH
Confidence 9999996655311 113467789999999999999999988887776421 2345666665544
No 41
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.61 E-value=2.2e-15 Score=163.34 Aligned_cols=258 Identities=21% Similarity=0.146 Sum_probs=102.3
Q ss_pred HHHHHHhcCHHHHHHHHHHH-HHh-cCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHH
Q 003047 328 VRFLLLTRNLKHAKREVKLA-MNI-ARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ 405 (854)
Q Consensus 328 ~~lyl~~~~~~~A~~elk~a-l~~-~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~ 405 (854)
++++...|++++|++.+++. ... . |+++.++..+|.+....+++++|++.|++++. .++. .+..+.+++.+ ..
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~--~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~-~~~~-~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAP--PDDPEYWRLLADLAWSLGDYDEAIEAYEKLLA-SDKA-NPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccc-cccc-ccccccccccc-cc
Confidence 88999999999999999654 455 6 89999999999999999999999999999998 6664 56677778888 79
Q ss_pred cCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc--CCCHHHHHHH
Q 003047 406 LAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVF--YKQPLLWLRL 483 (854)
Q Consensus 406 ~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~--P~~~~aw~~L 483 (854)
.+++++|+.++.++++.. +.+..+.....++...++++++...+.++.... |+++.+|..+
T Consensus 90 ~~~~~~A~~~~~~~~~~~-----------------~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 152 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERD-----------------GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLAL 152 (280)
T ss_dssp ---------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHH
T ss_pred cccccccccccccccccc-----------------cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHH
Confidence 999999999999988751 233445556778899999999999999987655 7889999999
Q ss_pred HHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 003047 484 AECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNA 563 (854)
Q Consensus 484 a~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nA 563 (854)
|.++. +.| ..+.|+.+|++|
T Consensus 153 a~~~~---~~G---------------------------------------------------------~~~~A~~~~~~a 172 (280)
T PF13429_consen 153 AEIYE---QLG---------------------------------------------------------DPDKALRDYRKA 172 (280)
T ss_dssp HHHHH---HCC---------------------------------------------------------HHHHHHHHHHHH
T ss_pred HHHHH---HcC---------------------------------------------------------CHHHHHHHHHHH
Confidence 99888 321 126699999999
Q ss_pred HhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccch
Q 003047 564 LHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYY 643 (854)
Q Consensus 564 L~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~ 643 (854)
|.+.|++..
T Consensus 173 l~~~P~~~~----------------------------------------------------------------------- 181 (280)
T PF13429_consen 173 LELDPDDPD----------------------------------------------------------------------- 181 (280)
T ss_dssp HHH-TT-HH-----------------------------------------------------------------------
T ss_pred HHcCCCCHH-----------------------------------------------------------------------
Confidence 999999542
Q ss_pred hhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhc
Q 003047 644 EDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLS 722 (854)
Q Consensus 644 ~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~ 722 (854)
++..+++++...|++.++....+.... .|+++..+..+|. ++..+|++++|+.+|++.+.
T Consensus 182 --------------~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~-----~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 182 --------------ARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAA-----AYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp --------------HHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHH-----HHHHHT-HHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHH-----Hhcccccccccccccccccc
Confidence 234567788899999998888888776 4677777766665 55578999999999999883
Q ss_pred CCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003047 723 GGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVT 802 (854)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~ 802 (854)
. .|. ++..+.++|.++...|+.++|.++.+
T Consensus 243 --~--------------------------------------~p~----------d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 243 --L--------------------------------------NPD----------DPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp --H--------------------------------------STT-----------HHHHHHHHHHHT-------------
T ss_pred --c--------------------------------------ccc----------cccccccccccccccccccccccccc
Confidence 1 132 56777889999999999999999999
Q ss_pred HHHhh
Q 003047 803 QALSI 807 (854)
Q Consensus 803 ~Al~~ 807 (854)
+++..
T Consensus 273 ~~~~~ 277 (280)
T PF13429_consen 273 QALRL 277 (280)
T ss_dssp -----
T ss_pred ccccc
Confidence 98764
No 42
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.60 E-value=2.5e-14 Score=150.90 Aligned_cols=227 Identities=13% Similarity=0.085 Sum_probs=199.3
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHc
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQL 406 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~ 406 (854)
-+++|+..|...+|.+.++..++.. ..++.+.+++.+|....+...|+..|...+. ..|. +...+..++.||..+
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q~---~~~dTfllLskvY~ridQP~~AL~~~~~gld-~fP~-~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQF---PHPDTFLLLSKVYQRIDQPERALLVIGEGLD-SFPF-DVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhcC---CchhHHHHHHHHHHHhccHHHHHHHHhhhhh-cCCc-hhhhhhhhHHHHHHH
Confidence 4789999999999999999999987 4678889999999999999999999999999 7884 466777889999999
Q ss_pred CCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 003047 407 AKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAEC 486 (854)
Q Consensus 407 g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~ 486 (854)
+++++|+++|+.+++. .+.+.++.--+|.-|+.-++++-|+.+|+++|++--.+|.++.++|.|
T Consensus 304 ~~~~~a~~lYk~vlk~----------------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLC 367 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKL----------------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLC 367 (478)
T ss_pred HhHHHHHHHHHHHHhc----------------CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHH
Confidence 9999999999999998 234556666778899999999999999999999999999999999999
Q ss_pred HHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhh
Q 003047 487 CLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHL 566 (854)
Q Consensus 487 ~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L 566 (854)
|.... .++++..||++|+..
T Consensus 368 C~yaq------------------------------------------------------------Q~D~~L~sf~RAlst 387 (478)
T KOG1129|consen 368 CLYAQ------------------------------------------------------------QIDLVLPSFQRALST 387 (478)
T ss_pred HHhhc------------------------------------------------------------chhhhHHHHHHHHhh
Confidence 99311 136688999999988
Q ss_pred cCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhH
Q 003047 567 LNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDV 646 (854)
Q Consensus 567 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~ 646 (854)
..+..++
T Consensus 388 at~~~~a------------------------------------------------------------------------- 394 (478)
T KOG1129|consen 388 ATQPGQA------------------------------------------------------------------------- 394 (478)
T ss_pred ccCcchh-------------------------------------------------------------------------
Confidence 7764431
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 003047 647 CRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYL 721 (854)
Q Consensus 647 ~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l 721 (854)
..+|++|++|....||+..|..+++-+|. ++++..++.+||.+-+ ..|++++|...|+-+-
T Consensus 395 ---------aDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~-----r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 395 ---------ADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAA-----RSGDILGARSLLNAAK 456 (478)
T ss_pred ---------hhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHh-----hcCchHHHHHHHHHhh
Confidence 14689999999999999999999999997 8999999999998766 4699999999999888
No 43
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.59 E-value=4.1e-14 Score=144.14 Aligned_cols=149 Identities=15% Similarity=0.075 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
+.+-.+.-|+.+|+...|+..++++++.+ |++..+|..+|.+|...|..+.|-+.|++++. .+|+ +..++||.|..
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls-l~p~-~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALS-LAPN-NGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh-cCCC-ccchhhhhhHH
Confidence 55566788999999999999999999999 99999999999999999999999999999999 7994 78999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHH
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLR 482 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~ 482 (854)
++.+|+|++|..+|++|+.. |. .+..+.+|.|+|.|.++.|+++.|.++|+++|+++|+++.....
T Consensus 113 LC~qg~~~eA~q~F~~Al~~-P~-------------Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~ 178 (250)
T COG3063 113 LCAQGRPEEAMQQFERALAD-PA-------------YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLE 178 (250)
T ss_pred HHhCCChHHHHHHHHHHHhC-CC-------------CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHH
Confidence 99999999999999999996 11 12345789999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 003047 483 LAECCLM 489 (854)
Q Consensus 483 La~~~i~ 489 (854)
|+...+.
T Consensus 179 ~a~~~~~ 185 (250)
T COG3063 179 LARLHYK 185 (250)
T ss_pred HHHHHHh
Confidence 9988773
No 44
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.58 E-value=2.4e-10 Score=143.41 Aligned_cols=344 Identities=11% Similarity=-0.023 Sum_probs=247.4
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCC
Q 003047 146 SVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDS 225 (854)
Q Consensus 146 ~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~ 225 (854)
...|..+-..|...|++++|.++|+++.+.--.-+. .++..++..|...|+.++|..+++.+.+. ++. ++
T Consensus 437 ~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~----~tynsLI~~y~k~G~vd~A~~vf~eM~~~-Gv~----Pd- 506 (1060)
T PLN03218 437 LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADC----KLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVE----AN- 506 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCC----CC-
Confidence 456767778889999999999999998874222222 25777889999999999999776555431 110 10
Q ss_pred CCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchh
Q 003047 226 GSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNEL 305 (854)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (854)
.
T Consensus 507 -------------------------------v------------------------------------------------ 507 (1060)
T PLN03218 507 -------------------------------V------------------------------------------------ 507 (1060)
T ss_pred -------------------------------H------------------------------------------------
Confidence 0
Q ss_pred hhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Q 003047 306 SRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSN 385 (854)
Q Consensus 306 g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~ 385 (854)
.-|.. -...|...|++++|.+.++........|+ ...+..+-..|...|++++|.++|.+...
T Consensus 508 -----------vTyna-----LI~gy~k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~ 570 (1060)
T PLN03218 508 -----------HTFGA-----LIDGCARAGQVAKAFGAYGIMRSKNVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKA 570 (1060)
T ss_pred -----------HHHHH-----HHHHHHHCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 00111 13456778999999999998877664355 56677788889999999999999999865
Q ss_pred c---cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHH
Q 003047 386 R---TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLA 462 (854)
Q Consensus 386 ~---~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeA 462 (854)
. ..|+ ...|+.|-..|.+.|++++|++.|++..+.. ..+....|..+...|.+.|++++|
T Consensus 571 ~~~gi~PD--~vTynaLI~ay~k~G~ldeA~elf~~M~e~g---------------i~p~~~tynsLI~ay~k~G~~deA 633 (1060)
T PLN03218 571 ETHPIDPD--HITVGALMKACANAGQVDRAKEVYQMIHEYN---------------IKGTPEVYTIAVNSCSQKGDWDFA 633 (1060)
T ss_pred hcCCCCCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC---------------CCCChHHHHHHHHHHHhcCCHHHH
Confidence 1 3563 5688889999999999999999999987751 134567888889999999999999
Q ss_pred HHHHHHHHHh--cCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCC
Q 003047 463 ARCFQKSSLV--FYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDD 540 (854)
Q Consensus 463 l~~y~kAL~l--~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~ 540 (854)
++.|.+.... .|+ ...|..|..+|. +.+
T Consensus 634 l~lf~eM~~~Gv~PD-~~TynsLI~a~~---k~G---------------------------------------------- 663 (1060)
T PLN03218 634 LSIYDDMKKKGVKPD-EVFFSALVDVAG---HAG---------------------------------------------- 663 (1060)
T ss_pred HHHHHHHHHcCCCCC-HHHHHHHHHHHH---hCC----------------------------------------------
Confidence 9999998875 465 456777766655 210
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCccccccccccccccccccccccccccccccccccccc
Q 003047 541 SSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTA 620 (854)
Q Consensus 541 ~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (854)
.++.|...|+.+.........
T Consensus 664 -----------~~eeA~~l~~eM~k~G~~pd~------------------------------------------------ 684 (1060)
T PLN03218 664 -----------DLDKAFEILQDARKQGIKLGT------------------------------------------------ 684 (1060)
T ss_pred -----------CHHHHHHHHHHHHHcCCCCCH------------------------------------------------
Confidence 246678888776643211100
Q ss_pred CCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc--CCCChHHHHHHHHH
Q 003047 621 NGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE--LPDCSRIYIFLGHI 698 (854)
Q Consensus 621 ~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~--~p~~~~~~~~la~l 698 (854)
..+..|...|.+.|++.+|+..++++.. ..++...|..|..
T Consensus 685 ------------------------------------~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~- 727 (1060)
T PLN03218 685 ------------------------------------VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALIT- 727 (1060)
T ss_pred ------------------------------------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Confidence 1234455678889999999999998875 3445566666555
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhH
Q 003047 699 YAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARG 778 (854)
Q Consensus 699 Y~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a 778 (854)
+|+..|++++|++.|+.... ..+ .| +.
T Consensus 728 ----gy~k~G~~eeAlelf~eM~~--~Gi------------------------------------~P-----------d~ 754 (1060)
T PLN03218 728 ----ALCEGNQLPKALEVLSEMKR--LGL------------------------------------CP-----------NT 754 (1060)
T ss_pred ----HHHHCCCHHHHHHHHHHHHH--cCC------------------------------------CC-----------CH
Confidence 66789999999999998772 110 13 35
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCC
Q 003047 779 TLYVNIAAMFAMQGEFERAHHFVTQALSI--LPRS 811 (854)
Q Consensus 779 ~~~~NLa~~~~~~g~~e~A~~~~~~Al~~--~P~~ 811 (854)
..|..|-.+++..|++++|.+++.++++. .|+.
T Consensus 755 ~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~ 789 (1060)
T PLN03218 755 ITYSILLVASERKDDADVGLDLLSQAKEDGIKPNL 789 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 67777888899999999999999998775 3554
No 45
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.58 E-value=6.8e-13 Score=135.97 Aligned_cols=148 Identities=19% Similarity=0.130 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
..+..+.+|...|++++|++.+++++... |++..++..+|.++...|++++|++.|++++. ..|. ...+++++|.+
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALT-LNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCC-CHHHHHHHHHH
Confidence 44556888999999999999999999999 99999999999999999999999999999999 6774 56789999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHH
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLR 482 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~ 482 (854)
|..+|++++|+.+|++++.... .+.....++++|.++...|++++|..+|.+++..+|+++.+|..
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 174 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPL--------------YPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLE 174 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccc--------------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHH
Confidence 9999999999999999998511 12345688999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 003047 483 LAECCL 488 (854)
Q Consensus 483 La~~~i 488 (854)
+|.++.
T Consensus 175 la~~~~ 180 (234)
T TIGR02521 175 LAELYY 180 (234)
T ss_pred HHHHHH
Confidence 998877
No 46
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.58 E-value=3.6e-13 Score=147.58 Aligned_cols=125 Identities=10% Similarity=-0.031 Sum_probs=109.6
Q ss_pred CHHHHHHHHHHHHHhcC-CC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHH
Q 003047 336 NLKHAKREVKLAMNIAR-GK-DSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSS 413 (854)
Q Consensus 336 ~~~~A~~elk~al~~~~-~P-~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi 413 (854)
+.+.++..+..++.... .| +.+.+++.+|.+|...|++++|+..|++++. .+|+ .+.+|+++|.+|..+|++++|+
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~-l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALA-LRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 45667777888886430 03 3377899999999999999999999999999 7895 6889999999999999999999
Q ss_pred HHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHH
Q 003047 414 VFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPL 478 (854)
Q Consensus 414 ~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~ 478 (854)
..|++++++ .|....+++++|.++...|++++|+++|+++++++|+++.
T Consensus 119 ~~~~~Al~l----------------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~ 167 (296)
T PRK11189 119 EAFDSVLEL----------------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY 167 (296)
T ss_pred HHHHHHHHh----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 999999998 3456789999999999999999999999999999999984
No 47
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.58 E-value=8.8e-13 Score=135.16 Aligned_cols=206 Identities=12% Similarity=0.036 Sum_probs=162.3
Q ss_pred hhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCC
Q 003047 144 DVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQV 223 (854)
Q Consensus 144 ~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~ 223 (854)
..+..++++|.+|+..|+|++|++.++++++..+... .+...++.+|...|++++|+ .++++++... +
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~~~~~~A~---~~~~~al~~~----~ 96 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDY-----LAYLALALYYQQLGELEKAE---DSFRRALTLN----P 96 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH-----HHHHHHHHHHHHcCCHHHHH---HHHHHHHhhC----C
Confidence 3577999999999999999999999999998543322 25677889999999999998 5667776543 1
Q ss_pred CCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccc
Q 003047 224 DSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSN 303 (854)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (854)
.. .
T Consensus 97 ~~------------------------------~----------------------------------------------- 99 (234)
T TIGR02521 97 NN------------------------------G----------------------------------------------- 99 (234)
T ss_pred CC------------------------------H-----------------------------------------------
Confidence 00 0
Q ss_pred hhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHh
Q 003047 304 ELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLAL 383 (854)
Q Consensus 304 ~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~ka 383 (854)
......+.+|..+|++++|++.+++++.....|.....+..+|.++...|++++|++.|.++
T Consensus 100 ------------------~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 161 (234)
T TIGR02521 100 ------------------DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRA 161 (234)
T ss_pred ------------------HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 01223466777889999999999999886433566778888999999999999999999999
Q ss_pred hhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHH
Q 003047 384 SNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAA 463 (854)
Q Consensus 384 l~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl 463 (854)
+. .+|. ...++..+|.+|..+|++++|+.+|++++.. .+.....+..++.++...|++++|.
T Consensus 162 ~~-~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~a~ 223 (234)
T TIGR02521 162 LQ-IDPQ-RPESLLELAELYYLRGQYKDARAYLERYQQT----------------YNQTAESLWLGIRIARALGDVAAAQ 223 (234)
T ss_pred HH-hCcC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHHhhHHHHH
Confidence 98 6774 4667888999999999999999999999887 1234566677889999999999999
Q ss_pred HHHHHHHHhcC
Q 003047 464 RCFQKSSLVFY 474 (854)
Q Consensus 464 ~~y~kAL~l~P 474 (854)
.+.+.+....|
T Consensus 224 ~~~~~~~~~~~ 234 (234)
T TIGR02521 224 RYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHhhCc
Confidence 98888777654
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.57 E-value=3.6e-12 Score=145.99 Aligned_cols=309 Identities=13% Similarity=0.064 Sum_probs=214.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhccc
Q 003047 25 SVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQ 104 (854)
Q Consensus 25 ~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 104 (854)
.++.....+|+..+..|+|+.|.+.+.++.+..|+..-.+.-.|.+..-.+ ++..+...+.++.+.
T Consensus 82 ~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g------~~~~A~~~l~~a~~~-------- 147 (409)
T TIGR00540 82 RKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRG------DEARANQHLEEAAEL-------- 147 (409)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHh--------
Confidence 467888999999999999999999999999998887666665565544333 333455555555521
Q ss_pred CCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhH-HHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhh
Q 003047 105 TEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVS-VAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETT 183 (854)
Q Consensus 105 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~ 183 (854)
.|+.. ......+.++...|+|++|+..++++.+.. |.+.
T Consensus 148 -------------------------------------~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~-- 187 (409)
T TIGR00540 148 -------------------------------------AGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHK-- 187 (409)
T ss_pred -------------------------------------CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH--
Confidence 11121 134456999999999999999999999954 4333
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhh-hhh
Q 003047 184 ALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAAT-VNA 262 (854)
Q Consensus 184 ~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 262 (854)
.+..+++.+|...|++++|++.+..+.+..... +. +.... ...
T Consensus 188 --~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~----~~------------------------------~~~~l~~~a 231 (409)
T TIGR00540 188 --EVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD----DE------------------------------EFADLEQKA 231 (409)
T ss_pred --HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC----HH------------------------------HHHHHHHHH
Confidence 267888999999999999998777776653211 00 00000 000
Q ss_pred hhhhhhhhhhhhhh-hhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHH
Q 003047 263 SENALSRTLSEETL-EDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAK 341 (854)
Q Consensus 263 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~ 341 (854)
..+.+.....++.. ..... . ...+....-...+.+..+..++..|+.++|.
T Consensus 232 ~~~~l~~~~~~~~~~~L~~~---------------------------~-~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~ 283 (409)
T TIGR00540 232 EIGLLDEAMADEGIDGLLNW---------------------------W-KNQPRHRRHNIALKIALAEHLIDCDDHDSAQ 283 (409)
T ss_pred HHHHHHHHHHhcCHHHHHHH---------------------------H-HHCCHHHhCCHHHHHHHHHHHHHCCChHHHH
Confidence 00000000000000 00000 0 0001000012356777889999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHH--HHHHHHHHHhcCHHHHHHHHHHhhhccCCCccH--HHHHHHHHHHHHcCCHHHHHHHHH
Q 003047 342 REVKLAMNIARGKDSSLAL--FLKSQLEYARRNHRKAIKLLLALSNRTEMGISS--MFNNNLGCIYYQLAKYHTSSVFLS 417 (854)
Q Consensus 342 ~elk~al~~~~~P~~~~a~--~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a--~~~nnLG~iy~~~g~~~eAi~~f~ 417 (854)
+.++++++.. |++.... .+........++.+++++.++++++ .+|+ ++ .++..+|.++.++|++++|.++|+
T Consensus 284 ~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk-~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 284 EIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK-NVDD-KPKCCINRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred HHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH-hCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 9999999999 9998642 4455555667899999999999999 7885 56 678889999999999999999999
Q ss_pred H--HHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh
Q 003047 418 K--ALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLV 472 (854)
Q Consensus 418 k--AL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l 472 (854)
+ ++.. .++.+.+..+|.++...|+.++|.++|++++..
T Consensus 360 ~a~a~~~-----------------~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 360 NVAACKE-----------------QLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HhHHhhc-----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5 5554 234556679999999999999999999998764
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.56 E-value=9.8e-12 Score=142.41 Aligned_cols=306 Identities=13% Similarity=0.029 Sum_probs=220.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
-.+.++.+.+..|+++.|.+.+.++.+.. |+...++++.|.++..+|++++|.++|.++.+ ..|+....+....+.+
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~-~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAE-LAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCcCchHHHHHHHHH
Confidence 44567888888999999999999998888 88888888999999999999999999999887 5564322344446888
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHH
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLR 482 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~ 482 (854)
+...|++++|...+++.++. .|.+..++.-++.+++..|++++|.+.+.+.++....++.....
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~----------------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~ 226 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEM----------------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFAD 226 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 88999999999999998887 34566788888999999999999999999888875555443322
Q ss_pred HHH-HHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 003047 483 LAE-CCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLL 561 (854)
Q Consensus 483 La~-~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~ 561 (854)
+-. .+......+ . .+.+...+.
T Consensus 227 l~~~a~~~~l~~~-------------------------------------~--------------------~~~~~~~L~ 249 (409)
T TIGR00540 227 LEQKAEIGLLDEA-------------------------------------M--------------------ADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHHHH-------------------------------------H--------------------HhcCHHHHH
Confidence 211 111000100 0 011344555
Q ss_pred HHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhcc
Q 003047 562 NALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLS 641 (854)
Q Consensus 562 nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~ 641 (854)
.++...|..... +
T Consensus 250 ~~~~~~p~~~~~-------------------------------------------------~------------------ 262 (409)
T TIGR00540 250 NWWKNQPRHRRH-------------------------------------------------N------------------ 262 (409)
T ss_pred HHHHHCCHHHhC-------------------------------------------------C------------------
Confidence 666666652210 0
Q ss_pred chhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 003047 642 YYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMY 720 (854)
Q Consensus 642 ~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~ 720 (854)
..++..++..+...|++++|+...++++. .|+....... ++.....+..++.+++++.++++
T Consensus 263 --------------~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~---~l~~~~~l~~~~~~~~~~~~e~~ 325 (409)
T TIGR00540 263 --------------IALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP---LCLPIPRLKPEDNEKLEKLIEKQ 325 (409)
T ss_pred --------------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH---HHHHhhhcCCCChHHHHHHHHHH
Confidence 02345668889999999999999999998 6776532211 11222334568889999999998
Q ss_pred hcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHH
Q 003047 721 LSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHF 800 (854)
Q Consensus 721 l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~ 800 (854)
++ .+ |. +| ....+..||.++..+|+|++|.+.
T Consensus 326 lk--~~--------------------------------------p~-----~~---~~~ll~sLg~l~~~~~~~~~A~~~ 357 (409)
T TIGR00540 326 AK--NV--------------------------------------DD-----KP---KCCINRALGQLLMKHGEFIEAADA 357 (409)
T ss_pred HH--hC--------------------------------------CC-----Ch---hHHHHHHHHHHHHHcccHHHHHHH
Confidence 83 11 22 11 226778899999999999999999
Q ss_pred HH--HHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003047 801 VT--QALSILPRSTEATLTAIYVDLMLGKSQEALAKLKY 837 (854)
Q Consensus 801 ~~--~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~ 837 (854)
|+ ++++..|+... ...++-++.++|+.++|.+++++
T Consensus 358 le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 358 FKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHH
Confidence 99 57778887754 44778888899999999999998
No 50
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.55 E-value=1e-12 Score=151.38 Aligned_cols=266 Identities=18% Similarity=0.139 Sum_probs=198.3
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-------cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhc
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNR-------TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASL 426 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~-------~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l 426 (854)
|.-......+|..|..+|+|++|+..++.++.. ..| ......+++|.+|..++++.+|+..|++||.+....
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl-~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHL-VVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCH-HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 777778888999999999999999999999983 266 456777789999999999999999999999996544
Q ss_pred ccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHHhccccCCCCC
Q 003047 427 RKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYK-----QPLLWLRLAECCLMALEKGLVAPGRS 501 (854)
Q Consensus 427 ~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~-----~~~aw~~La~~~i~~~~~~~~e~~~~ 501 (854)
...+ .+..+.++.||+..|...|++++|..++++|+.|.-. .+++-..|.+.......
T Consensus 275 ~G~~--------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~--------- 337 (508)
T KOG1840|consen 275 FGED--------HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQS--------- 337 (508)
T ss_pred cCCC--------CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHH---------
Confidence 3221 2445788999999999999999999999999998854 34443333332220000
Q ss_pred CCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCC
Q 003047 502 LSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPS 581 (854)
Q Consensus 502 ~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~ 581 (854)
+...++|...|++|+.+.-+.....
T Consensus 338 ------------------------------------------------~~~~Eea~~l~q~al~i~~~~~g~~------- 362 (508)
T KOG1840|consen 338 ------------------------------------------------MNEYEEAKKLLQKALKIYLDAPGED------- 362 (508)
T ss_pred ------------------------------------------------hcchhHHHHHHHHHHHHHHhhcccc-------
Confidence 0124789999999999987533210
Q ss_pred CCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHH
Q 003047 582 NSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLAN 661 (854)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~ 661 (854)
+ ..-..+..+
T Consensus 363 -----------------------------------------~-----------------------------~~~a~~~~n 372 (508)
T KOG1840|consen 363 -----------------------------------------N-----------------------------VNLAKIYAN 372 (508)
T ss_pred -----------------------------------------c-----------------------------hHHHHHHHH
Confidence 0 001134678
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcCC----C--ChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchh
Q 003047 662 LAYVELEMENPVKALAAARSLLELP----D--CSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGED 735 (854)
Q Consensus 662 la~v~l~lg~~~~Al~~~~~lL~~p----~--~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~ 735 (854)
||.+++.+|++.+|.+.+++++... . ....-+.+.+ +|+++..++++.+|...|.++.-
T Consensus 373 l~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~--la~~~~~~k~~~~a~~l~~~~~~------------- 437 (508)
T KOG1840|consen 373 LAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQ--LAEAYEELKKYEEAEQLFEEAKD------------- 437 (508)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHH--HHHHHHHhcccchHHHHHHHHHH-------------
Confidence 9999999999999999999999522 2 3333344444 56688899999999999999982
Q ss_pred hhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003047 736 CEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSI 807 (854)
Q Consensus 736 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~ 807 (854)
|+..-+ | .+|. .-..+.|||.+|..+|++|+|+++.++++..
T Consensus 438 ---i~~~~g--------------------~--~~~~-----~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 438 ---IMKLCG--------------------P--DHPD-----VTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred ---HHHHhC--------------------C--CCCc-----hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 221111 1 1222 5677899999999999999999999998753
No 51
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.55 E-value=1e-11 Score=141.75 Aligned_cols=123 Identities=16% Similarity=0.118 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhh
Q 003047 658 LLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCE 737 (854)
Q Consensus 658 ~l~~la~v~l~lg~~~~Al~~~~~lL~~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~ 737 (854)
++..+|..+...|++.+|....++++..+.++......+ .+..+++++|+..++..++ .
T Consensus 265 ~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~-------~l~~~~~~~al~~~e~~lk--~------------ 323 (398)
T PRK10747 265 LQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIP-------RLKTNNPEQLEKVLRQQIK--Q------------ 323 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHh-------hccCCChHHHHHHHHHHHh--h------------
Confidence 456778899999999999999999999777775443333 3456999999999999993 1
Q ss_pred hhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 003047 738 QWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLT 817 (854)
Q Consensus 738 ~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l 817 (854)
.|. ++..++-+|.++..+|++++|.+.|++++++.|++.. ...
T Consensus 324 --------------------------~P~----------~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~ 366 (398)
T PRK10747 324 --------------------------HGD----------TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAW 366 (398)
T ss_pred --------------------------CCC----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHH
Confidence 133 5778889999999999999999999999999998754 345
Q ss_pred HHHHHHhcCCHHHHHHHHHhc
Q 003047 818 AIYVDLMLGKSQEALAKLKYC 838 (854)
Q Consensus 818 ~~y~~L~~G~~~eA~~~lk~~ 838 (854)
++-++.++|+.++|.++++++
T Consensus 367 La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 367 LADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 666666999999999999985
No 52
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=6.2e-12 Score=141.01 Aligned_cols=352 Identities=13% Similarity=0.098 Sum_probs=233.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhC----CCChhHH--------------HHHHH
Q 003047 27 TATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDG----CTDPKKL--------------LEALN 88 (854)
Q Consensus 27 ~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~----~~~~~~~--------------~~~l~ 88 (854)
++-++..|..++-.|+|++|+..|.+-|+.+|++...+.+++.++.-... |++|.=+ ..++.
T Consensus 70 ~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~ 149 (539)
T KOG0548|consen 70 AKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYV 149 (539)
T ss_pred hhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHH
Confidence 46689999999999999999999999999999999999988877632210 1111100 11111
Q ss_pred HHHHHHHHHHhhhcccCCCCCC----------------C--CCcccCCCCCCCccccc-ccccccCCcccccchh-----
Q 003047 89 NVKNKSEELARATGEQTEGGGN----------------I--GSKVGLGSKGSGVVGNQ-VSAANSGSLVYMDEFD----- 144 (854)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~----------------~--g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----- 144 (854)
.+...++ ..|..++. + +.-+..++..+.....- +.-..+..... |..+
T Consensus 150 ~~l~~~~-------~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-d~~ee~~~k 221 (539)
T KOG0548|consen 150 KILEIIQ-------KNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIE-DNTEERRVK 221 (539)
T ss_pred HHHHHhh-------cCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccc-hhHHHHHHH
Confidence 1111111 11111111 1 11111222222111111 11111111110 1122
Q ss_pred -hHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCC
Q 003047 145 -VSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQV 223 (854)
Q Consensus 145 -~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~ 223 (854)
.+.-.-++|...+..++|..|++.|.+++..-..+ .-..+.+.+|+..+.|.+.+. ..++++..+.
T Consensus 222 ~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~i------t~~~n~aA~~~e~~~~~~c~~---~c~~a~E~gr---- 288 (539)
T KOG0548|consen 222 EKAHKEKELGNAAYKKKDFETAIQHYAKALELATDI------TYLNNIAAVYLERGKYAECIE---LCEKAVEVGR---- 288 (539)
T ss_pred HhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhh------HHHHHHHHHHHhccHHHHhhc---chHHHHHHhH----
Confidence 45566688999999999999999999999954221 225556799999999999984 3455544331
Q ss_pred CCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccc
Q 003047 224 DSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSN 303 (854)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (854)
+...-. +.+.. ++.
T Consensus 289 -------------------------------e~rad~----klIak-------------------------------~~~ 302 (539)
T KOG0548|consen 289 -------------------------------ELRADY----KLIAK-------------------------------ALA 302 (539)
T ss_pred -------------------------------HHHHHH----HHHHH-------------------------------HHH
Confidence 111000 01110 111
Q ss_pred hhhhhhhhcccchhHHHHHHHHHHHH--------HHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHH
Q 003047 304 ELSRTLVDRSISTVDLKLKLQLYKVR--------FLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRK 375 (854)
Q Consensus 304 ~~g~~~~~~~~~~~~~~~~l~l~K~~--------lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~k 375 (854)
-+|.+|+.. +.+...+.+|..- +.-..+..++++++.+...-++ |+-..--...|+-++..|+|.+
T Consensus 303 r~g~a~~k~----~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 303 RLGNAYTKR----EDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred HhhhhhhhH----HhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHH
Confidence 144444443 3444444444221 2223345666777777777777 8888888899999999999999
Q ss_pred HHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHH
Q 003047 376 AIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLA 455 (854)
Q Consensus 376 Al~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~ 455 (854)
|++.|.++++ .+|+ .+..|.|.+.+|.++|.+..|+...++++++ .|.....|+.-|.++..
T Consensus 377 Av~~YteAIk-r~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL----------------~p~~~kgy~RKg~al~~ 438 (539)
T KOG0548|consen 377 AVKHYTEAIK-RDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIEL----------------DPNFIKAYLRKGAALRA 438 (539)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----------------CchHHHHHHHHHHHHHH
Confidence 9999999999 6885 6889999999999999999999999999998 35567889999999999
Q ss_pred CCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003047 456 CGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLM 489 (854)
Q Consensus 456 ~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~ 489 (854)
+.+|++|.++|+++++.+|++..+.-.+..|.-.
T Consensus 439 mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 439 MKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 9999999999999999999999998888888764
No 53
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.53 E-value=1.6e-11 Score=140.13 Aligned_cols=308 Identities=13% Similarity=0.050 Sum_probs=210.3
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHhCCCChhHHHHHHHHHHHHHHHHHhhhc
Q 003047 24 LSVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEY-FRDGCTDPKKLLEALNNVKNKSEELARATG 102 (854)
Q Consensus 24 ~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 102 (854)
..++...+.+|+..+..|+|++|.+.+.+.-+. .+.|.+++.++ +.. ... .++..+...+.++.+.
T Consensus 81 ~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~-~~~p~l~~lla-A~aA~~~-----g~~~~A~~~l~~A~~~------ 147 (398)
T PRK10747 81 RRRARKQTEQALLKLAEGDYQQVEKLMTRNADH-AEQPVVNYLLA-AEAAQQR-----GDEARANQHLERAAEL------ 147 (398)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-ccchHHHHHHH-HHHHHHC-----CCHHHHHHHHHHHHhc------
Confidence 347788899999999999999999777765443 23466666553 333 232 3445577777776631
Q ss_pred ccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHH-HHHHHHHHHHhhcHHHHHHHHHHhhhccCCCch
Q 003047 103 EQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVA-KLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDE 181 (854)
Q Consensus 103 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e 181 (854)
++++... ..-.+.++...|+|++|+.+++++.+..+...+
T Consensus 148 ---------------------------------------~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~ 188 (398)
T PRK10747 148 ---------------------------------------ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPE 188 (398)
T ss_pred ---------------------------------------CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH
Confidence 2333222 224489999999999999999999995544333
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhh
Q 003047 182 TTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVN 261 (854)
Q Consensus 182 ~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (854)
+..++..+|...|++++|+++|..+++...+.... -.+ .+.. .+.
T Consensus 189 -----al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~----------~~~-------------------l~~~-a~~ 233 (398)
T PRK10747 189 -----VLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEH----------RAM-------------------LEQQ-AWI 233 (398)
T ss_pred -----HHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHH----------HHH-------------------HHHH-HHH
Confidence 57778899999999999999998888776442000 000 0000 000
Q ss_pred hhhhhhhhhhh-hhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHH
Q 003047 262 ASENALSRTLS-EETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHA 340 (854)
Q Consensus 262 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A 340 (854)
.........-+ +...++-..+ -..+ .-...+.+.-++.++..|+.++|
T Consensus 234 ~l~~~~~~~~~~~~l~~~w~~l-----------------------p~~~--------~~~~~~~~~~A~~l~~~g~~~~A 282 (398)
T PRK10747 234 GLMDQAMADQGSEGLKRWWKNQ-----------------------SRKT--------RHQVALQVAMAEHLIECDDHDTA 282 (398)
T ss_pred HHHHHHHHhcCHHHHHHHHHhC-----------------------CHHH--------hCCHHHHHHHHHHHHHCCCHHHH
Confidence 00000000000 0011110010 0000 00123555668999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003047 341 KREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKAL 420 (854)
Q Consensus 341 ~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL 420 (854)
.+.+++.++. |.++......+.+ ..++++++++.+++.++ ..|+ ++..+..+|.++...|++++|..+|++++
T Consensus 283 ~~~L~~~l~~---~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk-~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al 355 (398)
T PRK10747 283 QQIILDGLKR---QYDERLVLLIPRL--KTNNPEQLEKVLRQQIK-QHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAAL 355 (398)
T ss_pred HHHHHHHHhc---CCCHHHHHHHhhc--cCCChHHHHHHHHHHHh-hCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999995 5566655555554 44999999999999999 7884 67788889999999999999999999999
Q ss_pred HhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc
Q 003047 421 SNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVF 473 (854)
Q Consensus 421 ~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~ 473 (854)
.. .|+...+..++.++...|+.++|.++|++++.+.
T Consensus 356 ~~-----------------~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 356 KQ-----------------RPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred hc-----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 97 2345566678999999999999999999998865
No 54
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.53 E-value=3.2e-13 Score=152.34 Aligned_cols=256 Identities=14% Similarity=0.104 Sum_probs=193.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 003047 30 LAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGG 109 (854)
Q Consensus 30 l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 109 (854)
=|.+|...+.+|...+|.-.|+.+...+|.++++|--||+++....+ -..++..+++.++
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~------E~~ai~AL~rcl~-------------- 347 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENEN------EQNAISALRRCLE-------------- 347 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccc------hHHHHHHHHHHHh--------------
Confidence 48899999999999999999999999999999999999999775432 2346667777763
Q ss_pred CCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHH
Q 003047 110 NIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICL 189 (854)
Q Consensus 110 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l 189 (854)
+ ||+|-.++..+|+.|.+.|.-.+|+++|.+=+....+ +
T Consensus 348 ------------------------------L-dP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~---y------- 386 (579)
T KOG1125|consen 348 ------------------------------L-DPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPK---Y------- 386 (579)
T ss_pred ------------------------------c-CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcc---c-------
Confidence 2 6778889999999999999999999999777664332 1
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhh
Q 003047 190 LLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSR 269 (854)
Q Consensus 190 ~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (854)
. ++- ... .+.+. -++++++ +
T Consensus 387 --------------~-----~l~----~a~-~~~~~-----------~~~~s~~---~---------------------- 406 (579)
T KOG1125|consen 387 --------------V-----HLV----SAG-ENEDF-----------ENTKSFL---D---------------------- 406 (579)
T ss_pred --------------h-----hcc----ccC-ccccc-----------cCCcCCC---C----------------------
Confidence 0 000 000 00000 0000000 0
Q ss_pred hhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 003047 270 TLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMN 349 (854)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~ 349 (854)
. ..+.. + .++|+ .+..
T Consensus 407 -----------~-----------------------------------~~l~~-i----~~~fL-------------eaa~ 422 (579)
T KOG1125|consen 407 -----------S-----------------------------------SHLAH-I----QELFL-------------EAAR 422 (579)
T ss_pred -----------H-----------------------------------HHHHH-H----HHHHH-------------HHHH
Confidence 0 00000 0 11222 2223
Q ss_pred hcCCC--CCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcc
Q 003047 350 IARGK--DSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLR 427 (854)
Q Consensus 350 ~~~~P--~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~ 427 (854)
.. | .+++.+.-+|.+|+..|+|++|++||+.+|. .+|. +...||.||..+..-.+.++||..|++||++
T Consensus 423 ~~--~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~-v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL----- 493 (579)
T KOG1125|consen 423 QL--PTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ-VKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL----- 493 (579)
T ss_pred hC--CCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh-cCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc-----
Confidence 33 7 7899999999999999999999999999999 7995 6889999999999999999999999999999
Q ss_pred cCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC----------HHHHHHHHHHHHHH
Q 003047 428 KDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQ----------PLLWLRLAECCLMA 490 (854)
Q Consensus 428 ~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~----------~~aw~~La~~~i~~ 490 (854)
.|....+.||+|++++.+|-|+||..+|..||.+.+.+ -.+|..|=.+++..
T Consensus 494 -----------qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~ 555 (579)
T KOG1125|consen 494 -----------QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAM 555 (579)
T ss_pred -----------CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHc
Confidence 35556789999999999999999999999999998772 25788887666643
No 55
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.53 E-value=1e-09 Score=137.80 Aligned_cols=294 Identities=11% Similarity=-0.019 Sum_probs=225.0
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-cCCCccHHHHHHHHHHHHHcC
Q 003047 329 RFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNR-TEMGISSMFNNNLGCIYYQLA 407 (854)
Q Consensus 329 ~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~-~dp~~~a~~~nnLG~iy~~~g 407 (854)
..|...|++++|.+.++...+... .-|...|..+-..|.+.|++++|+++|...... ..| +...|+.|...|.+.|
T Consensus 480 ~~y~k~G~vd~A~~vf~eM~~~Gv-~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P--D~vTYnsLI~a~~k~G 556 (1060)
T PLN03218 480 STCAKSGKVDAMFEVFHEMVNAGV-EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP--DRVVFNALISACGQSG 556 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHCC
Confidence 456788999999999999988762 236778888888999999999999999998763 356 3678999999999999
Q ss_pred CHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc-CCCHHHHHHHHHH
Q 003047 408 KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVF-YKQPLLWLRLAEC 486 (854)
Q Consensus 408 ~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~-P~~~~aw~~La~~ 486 (854)
++++|...|.+....... ..++..+|..+-.+|.+.|++++|++.|++..+.. +.++..|..+..+
T Consensus 557 ~~deA~~lf~eM~~~~~g-------------i~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~a 623 (1060)
T PLN03218 557 AVDRAFDVLAEMKAETHP-------------IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNS 623 (1060)
T ss_pred CHHHHHHHHHHHHHhcCC-------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHH
Confidence 999999999998764110 12456778888899999999999999999999876 4567788888887
Q ss_pred HHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhh
Q 003047 487 CLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHL 566 (854)
Q Consensus 487 ~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L 566 (854)
|. +.+ .+++|...|+.....
T Consensus 624 y~---k~G---------------------------------------------------------~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 624 CS---QKG---------------------------------------------------------DWDFALSIYDDMKKK 643 (1060)
T ss_pred HH---hcC---------------------------------------------------------CHHHHHHHHHHHHHc
Confidence 77 211 236688888766542
Q ss_pred cCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhH
Q 003047 567 LNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDV 646 (854)
Q Consensus 567 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~ 646 (854)
.-. + .
T Consensus 644 Gv~--P----------------------------------------------------------------------D--- 648 (1060)
T PLN03218 644 GVK--P----------------------------------------------------------------------D--- 648 (1060)
T ss_pred CCC--C----------------------------------------------------------------------C---
Confidence 111 0 0
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc--CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCC
Q 003047 647 CRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE--LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGG 724 (854)
Q Consensus 647 ~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~--~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~ 724 (854)
...+..+..++...|++.+|+..+++++. .+++...|..|.. +|+..|++++|++.|+....
T Consensus 649 ---------~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~-----ay~k~G~~eeA~~lf~eM~~-- 712 (1060)
T PLN03218 649 ---------EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG-----ACSNAKNWKKALELYEDIKS-- 712 (1060)
T ss_pred ---------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-----HHHhCCCHHHHHHHHHHHHH--
Confidence 01234455678899999999999999997 3556677777766 66789999999999998762
Q ss_pred CCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003047 725 DNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQA 804 (854)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~A 804 (854)
..+ .| +...|..|-..|+..|++++|.+.+++.
T Consensus 713 ~g~------------------------------------~P-----------dvvtyN~LI~gy~k~G~~eeAlelf~eM 745 (1060)
T PLN03218 713 IKL------------------------------------RP-----------TVSTMNALITALCEGNQLPKALEVLSEM 745 (1060)
T ss_pred cCC------------------------------------CC-----------CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 110 13 3677899999999999999999999987
Q ss_pred Hhh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003047 805 LSI--LPRSTEATLTAIYVDLMLGKSQEALAKLKY 837 (854)
Q Consensus 805 l~~--~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~ 837 (854)
... .|+. .....++..+.+.|++++|+.++..
T Consensus 746 ~~~Gi~Pd~-~Ty~sLL~a~~k~G~le~A~~l~~~ 779 (1060)
T PLN03218 746 KRLGLCPNT-ITYSILLVASERKDDADVGLDLLSQ 779 (1060)
T ss_pred HHcCCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 653 4654 3344444566699999999999988
No 56
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.52 E-value=1.9e-12 Score=149.15 Aligned_cols=259 Identities=16% Similarity=0.059 Sum_probs=185.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhh
Q 003047 30 LAKEAALYFQSRKFDECLDLLKQLLDK--------KPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARAT 101 (854)
Q Consensus 30 l~~~a~~~~~~g~y~~Al~~l~~~l~~--------~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 101 (854)
+..-|..|+.+|+|+.|+.+|++++++ .|.=...+.++|++|...+. +.+++.-+.+++...-.
T Consensus 202 ~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k------~~eAv~ly~~AL~i~e~-- 273 (508)
T KOG1840|consen 202 LRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGK------YDEAVNLYEEALTIREE-- 273 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHH--
Confidence 334788999999999999999999997 22223445568888776654 44455555555532100
Q ss_pred cccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCch
Q 003047 102 GEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDE 181 (854)
Q Consensus 102 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e 181 (854)
....++|..+..+.|+|+.|+..|+|++|..++++++.+.+.+.-
T Consensus 274 -----------------------------------~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~ 318 (508)
T KOG1840|consen 274 -----------------------------------VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLG 318 (508)
T ss_pred -----------------------------------hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhc
Confidence 012247889999999999999999999999999999998776322
Q ss_pred ---hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhh
Q 003047 182 ---TTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAA 258 (854)
Q Consensus 182 ---~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (854)
......+..++.++...+++++|. .++++++.+-...
T Consensus 319 ~~~~~v~~~l~~~~~~~~~~~~~Eea~---~l~q~al~i~~~~------------------------------------- 358 (508)
T KOG1840|consen 319 ASHPEVAAQLSELAAILQSMNEYEEAK---KLLQKALKIYLDA------------------------------------- 358 (508)
T ss_pred cChHHHHHHHHHHHHHHHHhcchhHHH---HHHHHHHHHHHhh-------------------------------------
Confidence 223345566778888888999887 4566776553100
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHH
Q 003047 259 TVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLK 338 (854)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~ 338 (854)
+. + .
T Consensus 359 ----------------------------~g---~--------------------------------------------~- 362 (508)
T KOG1840|consen 359 ----------------------------PG---E--------------------------------------------D- 362 (508)
T ss_pred ----------------------------cc---c--------------------------------------------c-
Confidence 00 0 0
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-------cCCCccHHHHHHHHHHHHHcCCHHH
Q 003047 339 HAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNR-------TEMGISSMFNNNLGCIYYQLAKYHT 411 (854)
Q Consensus 339 ~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~-------~dp~~~a~~~nnLG~iy~~~g~~~e 411 (854)
+ |.-+..+..+|.+|+.+|+|++|.++|++++.+ .++ .....+++||..|.+++++.+
T Consensus 363 ------------~--~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~-~~~~~l~~la~~~~~~k~~~~ 427 (508)
T KOG1840|consen 363 ------------N--VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY-GVGKPLNQLAEAYEELKKYEE 427 (508)
T ss_pred ------------c--hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh-hhhHHHHHHHHHHHHhcccch
Confidence 0 112234556777788888888888888888763 133 346788899999999999999
Q ss_pred HHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Q 003047 412 SSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSL 471 (854)
Q Consensus 412 Ai~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~ 471 (854)
|...|.+++.+.+..... .+.-...+-||+.+|-.+|++++|+++.++++.
T Consensus 428 a~~l~~~~~~i~~~~g~~---------~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 428 AEQLFEEAKDIMKLCGPD---------HPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHHHHhCCC---------CCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 999999999997333321 123456788999999999999999999888774
No 57
>PLN02789 farnesyltranstransferase
Probab=99.51 E-value=5.6e-12 Score=139.18 Aligned_cols=152 Identities=7% Similarity=-0.045 Sum_probs=137.8
Q ss_pred hhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHhhhccCCCccHH
Q 003047 316 TVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARR-NHRKAIKLLLALSNRTEMGISSM 394 (854)
Q Consensus 316 ~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g-~~~kAl~~l~kal~~~dp~~~a~ 394 (854)
.++|.....++++- +...++.++|+....+++.++ |++..++..++.++...| ++++|++++++++. .+|. +..
T Consensus 33 ~~~~~~a~~~~ra~-l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~-~npk-nyq 107 (320)
T PLN02789 33 TPEFREAMDYFRAV-YASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAE-DNPK-NYQ 107 (320)
T ss_pred CHHHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH-HCCc-chH
Confidence 47788888888664 666789999999999999999 999999999999999998 68999999999999 7884 678
Q ss_pred HHHHHHHHHHHcCCH--HHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh
Q 003047 395 FNNNLGCIYYQLAKY--HTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLV 472 (854)
Q Consensus 395 ~~nnLG~iy~~~g~~--~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l 472 (854)
+|++.|.++.++|+. ++++.+++++|.. .+.+..+|+++|.++...|++++|++++.++|++
T Consensus 108 aW~~R~~~l~~l~~~~~~~el~~~~kal~~----------------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 108 IWHHRRWLAEKLGPDAANKELEFTRKILSL----------------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred HhHHHHHHHHHcCchhhHHHHHHHHHHHHh----------------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 999999999999984 7889999999998 4567899999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHH
Q 003047 473 FYKQPLLWLRLAECCL 488 (854)
Q Consensus 473 ~P~~~~aw~~La~~~i 488 (854)
+|.+..+|.+++.+..
T Consensus 172 d~~N~sAW~~R~~vl~ 187 (320)
T PLN02789 172 DVRNNSAWNQRYFVIT 187 (320)
T ss_pred CCCchhHHHHHHHHHH
Confidence 9999999999997765
No 58
>PLN03077 Protein ECB2; Provisional
Probab=99.51 E-value=2.9e-10 Score=142.20 Aligned_cols=138 Identities=9% Similarity=-0.031 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhh
Q 003047 658 LLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCE 737 (854)
Q Consensus 658 ~l~~la~v~l~lg~~~~Al~~~~~lL~~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~ 737 (854)
.|..+...+...|+..+|+..+++.....-.|+...+.+.+ .++...|++++|..+|+..... ..
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll---~a~~~~g~v~ea~~~f~~M~~~-~g----------- 620 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL---CACSRSGMVTQGLEYFHSMEEK-YS----------- 620 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH---HHHhhcChHHHHHHHHHHHHHH-hC-----------
Confidence 35556667888899999999999888632222233333322 2678889999999999887720 00
Q ss_pred hhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 003047 738 QWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLT 817 (854)
Q Consensus 738 ~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l 817 (854)
+ .| +...|..|..+++..|++++|.+.+++. .+.|+.. ++..
T Consensus 621 ---------------i----------~P-----------~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~~-~~~a 662 (857)
T PLN03077 621 ---------------I----------TP-----------NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPDPA-VWGA 662 (857)
T ss_pred ---------------C----------CC-----------chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCHH-HHHH
Confidence 0 13 3678889999999999999999999875 4567643 3333
Q ss_pred HHHHHHhcCCHHHHHHHHHh-cCCCccccccc
Q 003047 818 AIYVDLMLGKSQEALAKLKY-CNHVRFLPSGL 848 (854)
Q Consensus 818 ~~y~~L~~G~~~eA~~~lk~-~~~~~~~~~~~ 848 (854)
++......|+.+.|....++ .+.-|.++..+
T Consensus 663 Ll~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y 694 (857)
T PLN03077 663 LLNACRIHRHVELGELAAQHIFELDPNSVGYY 694 (857)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCcchH
Confidence 33344578999998888877 56666665544
No 59
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.51 E-value=3e-13 Score=132.52 Aligned_cols=126 Identities=17% Similarity=0.159 Sum_probs=116.0
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003047 342 REVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALS 421 (854)
Q Consensus 342 ~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~ 421 (854)
..+++++.++ |++ ++.+|.++...|++++|+++|++++. .+|. ...+++++|.++..+|++++|+.+|++++.
T Consensus 14 ~~~~~al~~~--p~~---~~~~g~~~~~~g~~~~A~~~~~~al~-~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLSVD--PET---VYASGYASWQEGDYSRAVIDFSWLVM-AQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHcC--HHH---HHHHHHHHHHcCCHHHHHHHHHHHHH-cCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 5678889999 885 56789999999999999999999999 7884 688999999999999999999999999999
Q ss_pred hchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 003047 422 NSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMA 490 (854)
Q Consensus 422 ~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~ 490 (854)
. .|.++.+++++|.++...|++++|+.+|++++.+.|+++..|..++.+++.+
T Consensus 87 l----------------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 87 L----------------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred c----------------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 8 3567899999999999999999999999999999999999999999998853
No 60
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=8e-12 Score=140.17 Aligned_cols=386 Identities=14% Similarity=0.036 Sum_probs=228.7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCC
Q 003047 361 FLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQD 440 (854)
Q Consensus 361 ~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~ 440 (854)
-.+|+..+..|+|+.|+.+|..++. .+|. +...|.|...+|..+|+|++|++-=.|...+ .|
T Consensus 6 k~kgnaa~s~~d~~~ai~~~t~ai~-l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l----------------~p 67 (539)
T KOG0548|consen 6 KEKGNAAFSSGDFETAIRLFTEAIM-LSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL----------------NP 67 (539)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHc-cCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc----------------CC
Confidence 4578999999999999999999999 7885 6788999999999999999999999999998 45
Q ss_pred ccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccce
Q 003047 441 KSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRY 520 (854)
Q Consensus 441 ~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~ 520 (854)
..+..|..+|.+++-+|+|++|+..|.+.|+.+|+|..+...|+++....... -+. +.++- .|.+
T Consensus 68 ~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~--~~~-----~~~p~--------~~~~ 132 (539)
T KOG0548|consen 68 DWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAA--DQL-----FTKPY--------FHEK 132 (539)
T ss_pred chhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHh--hhh-----ccCcH--------HHHH
Confidence 56789999999999999999999999999999999999999999988321111 000 00000 0111
Q ss_pred eeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCccccccccccccccccc
Q 003047 521 LVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLN 600 (854)
Q Consensus 521 l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (854)
.+..|..+......||.+-+...+..+.. .++++.+..-........+...-
T Consensus 133 ------------------------l~~~p~t~~~~~~~~~~~~l~~~~~~p~~---l~~~l~d~r~m~a~~~l~~~~~~- 184 (539)
T KOG0548|consen 133 ------------------------LANLPLTNYSLSDPAYVKILEIIQKNPTS---LKLYLNDPRLMKADGQLKGVDEL- 184 (539)
T ss_pred ------------------------hhcChhhhhhhccHHHHHHHHHhhcCcHh---hhcccccHHHHHHHHHHhcCccc-
Confidence 12223333444566777777777665432 33333221111000000000000
Q ss_pred ccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003047 601 HKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAAR 680 (854)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~ 680 (854)
-.-..+..++ .....+.... ...-+...+............-...+|...+.-.++..|+.++.
T Consensus 185 --~~~~~~~~~~-------~~~~~p~~~~-------~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~ 248 (539)
T KOG0548|consen 185 --LFYASGIEIL-------ASMAEPCKQE-------HNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYA 248 (539)
T ss_pred --cccccccccC-------CCCCCccccc-------CCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 0000000000 0000000000 00000000000111112222334556666666666666666666
Q ss_pred HHHcCCCChHHHHHHHHHH------------------------------------HHHHHHhcCCHHHHHHHHHhhhcCC
Q 003047 681 SLLELPDCSRIYIFLGHIY------------------------------------AAEALCLLNRPKEAAEHFSMYLSGG 724 (854)
Q Consensus 681 ~lL~~p~~~~~~~~la~lY------------------------------------~aeAl~~lgr~~eAl~~l~~~l~~~ 724 (854)
.+++......-+.+.|++| .+.++..+++++.|+.+|.+++..-
T Consensus 249 ~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~ 328 (539)
T KOG0548|consen 249 KALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEH 328 (539)
T ss_pred HHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhh
Confidence 6665333332222222222 2346777899999999999988421
Q ss_pred CCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003047 725 DNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQA 804 (854)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~A 804 (854)
...++--+..+..+.+.+.. ..+.+ .| . .+.---+-|.-+...|+|..|.+.|.+|
T Consensus 329 Rt~~~ls~lk~~Ek~~k~~e-------~~a~~-------~p-----e-----~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 329 RTPDLLSKLKEAEKALKEAE-------RKAYI-------NP-----E-----KAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred cCHHHHHHHHHHHHHHHHHH-------HHHhh-------Ch-----h-----HHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 11111112222222222211 01101 12 1 2444455688899999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCcccccc
Q 003047 805 LSILPRSTEATLTAIYVDLMLGKSQEALAKLKY-CNHVRFLPSG 847 (854)
Q Consensus 805 l~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~-~~~~~~~~~~ 847 (854)
+..+|+++...-+++++++++|++..|+.-.+. ++.-|.-+.|
T Consensus 385 Ikr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kg 428 (539)
T KOG0548|consen 385 IKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKA 428 (539)
T ss_pred HhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHH
Confidence 999999999999999999999999999988877 5554544433
No 61
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.47 E-value=1.1e-09 Score=127.13 Aligned_cols=429 Identities=16% Similarity=0.034 Sum_probs=281.3
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCC
Q 003047 145 VSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVD 224 (854)
Q Consensus 145 ~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~ 224 (854)
.-..||.++..|...|.-.+|+.++++.+...+...+.. ++++-..++ .+++..+.+.++|-.|++...... +
T Consensus 356 ~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s---~~Lmasklc--~e~l~~~eegldYA~kai~~~~~~--~ 428 (799)
T KOG4162|consen 356 EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS---VLLMASKLC--IERLKLVEEGLDYAQKAISLLGGQ--R 428 (799)
T ss_pred hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch---HHHHHHHHH--HhchhhhhhHHHHHHHHHHHhhhh--h
Confidence 345899999999999999999999999999776665542 344444554 345555556668999988643100 0
Q ss_pred CCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccch
Q 003047 225 SGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNE 304 (854)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (854)
+ .. .+..+-.
T Consensus 429 ~-----------------------------~l-----------------------------------------~~~~~l~ 438 (799)
T KOG4162|consen 429 S-----------------------------HL-----------------------------------------KPRGYLF 438 (799)
T ss_pred h-----------------------------hh-----------------------------------------hhhHHHH
Confidence 0 00 0112223
Q ss_pred hhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhh
Q 003047 305 LSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALS 384 (854)
Q Consensus 305 ~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal 384 (854)
+|.+|....-... +.-.|- ....+++..++++++.+ |+|+.+.|.++..|-.+++.+.|..+..+++
T Consensus 439 lGi~y~~~A~~a~-----~~seR~------~~h~kslqale~av~~d--~~dp~~if~lalq~A~~R~l~sAl~~~~eaL 505 (799)
T KOG4162|consen 439 LGIAYGFQARQAN-----LKSERD------ALHKKSLQALEEAVQFD--PTDPLVIFYLALQYAEQRQLTSALDYAREAL 505 (799)
T ss_pred HHHHHHhHhhcCC-----ChHHHH------HHHHHHHHHHHHHHhcC--CCCchHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4444433210000 001111 12356889999999999 9999999999999999999999999999999
Q ss_pred hccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHH
Q 003047 385 NRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAAR 464 (854)
Q Consensus 385 ~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~ 464 (854)
+ ..+.+.+.+|.-|+.++...+++.+|+....-+|...+ .+...+.-...+-...++.++|+.
T Consensus 506 ~-l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~----------------~N~~l~~~~~~i~~~~~~~e~~l~ 568 (799)
T KOG4162|consen 506 A-LNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG----------------DNHVLMDGKIHIELTFNDREEALD 568 (799)
T ss_pred H-hcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh----------------hhhhhchhhhhhhhhcccHHHHHH
Confidence 9 65667788999999999999999999999999999733 222333333444555899999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCC
Q 003047 465 CFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLG 544 (854)
Q Consensus 465 ~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~ 544 (854)
.+...|.+....+.+-..+++.-....+. ++-+...
T Consensus 569 t~~~~L~~we~~~~~q~~~~~g~~~~lk~--------------------------~l~la~~------------------ 604 (799)
T KOG4162|consen 569 TCIHKLALWEAEYGVQQTLDEGKLLRLKA--------------------------GLHLALS------------------ 604 (799)
T ss_pred HHHHHHHHHHhhhhHhhhhhhhhhhhhhc--------------------------ccccCcc------------------
Confidence 99999999888877777777433311110 0111111
Q ss_pred CCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCc
Q 003047 545 SDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDA 624 (854)
Q Consensus 545 ~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~ 624 (854)
....|..-.+.+..+.-.... +.+++..-.+. +. ..|
T Consensus 605 -------q~~~a~s~sr~ls~l~a~~~~---------------~~~se~~Lp~s-----------~~--------~~~-- 641 (799)
T KOG4162|consen 605 -------QPTDAISTSRYLSSLVASQLK---------------SAGSELKLPSS-----------TV--------LPG-- 641 (799)
T ss_pred -------cccccchhhHHHHHHHHhhhh---------------hcccccccCcc-----------cc--------cCC--
Confidence 112244555555554442111 00000000000 00 000
Q ss_pred ccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHH
Q 003047 625 KDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEA 703 (854)
Q Consensus 625 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeA 703 (854)
|.+ .-.+...++...+.+++..++.++|..|..++-. .|-.+..|+..|.++..
T Consensus 642 -----------------~~~------~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~-- 696 (799)
T KOG4162|consen 642 -----------------PDS------LWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEV-- 696 (799)
T ss_pred -----------------CCc------hHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHH--
Confidence 000 1111124455667788888999999888888776 67777888888887664
Q ss_pred HHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHH
Q 003047 704 LCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVN 783 (854)
Q Consensus 704 l~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~N 783 (854)
.|...||.++|.-++ ..| |. .+.....
T Consensus 697 ---~~~~~EA~~af~~Al--~ld--------------------------------------P~----------hv~s~~A 723 (799)
T KOG4162|consen 697 ---KGQLEEAKEAFLVAL--ALD--------------------------------------PD----------HVPSMTA 723 (799)
T ss_pred ---HHhhHHHHHHHHHHH--hcC--------------------------------------CC----------CcHHHHH
Confidence 589999999999888 333 32 2333456
Q ss_pred HHHHHHHcCCHHHHHH--HHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCcccc
Q 003047 784 IAAMFAMQGEFERAHH--FVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKY-CNHVRFLP 845 (854)
Q Consensus 784 La~~~~~~g~~e~A~~--~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~-~~~~~~~~ 845 (854)
||-++.+.|+-.-|.+ .++-|++++|.++++|..++-+.-++|+.++|-..+.. .+.-++.|
T Consensus 724 la~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 724 LAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 7888888887777777 88888888888888888888888888888888888876 55444444
No 62
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=1.7e-12 Score=137.17 Aligned_cols=217 Identities=16% Similarity=0.089 Sum_probs=178.8
Q ss_pred HHHHH-HHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCC
Q 003047 147 VAKLN-IAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDS 225 (854)
Q Consensus 147 ~~~~n-~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~ 225 (854)
|.|-+ +|.+|+++|.+.+|.+.++..++..+- .| ..++|..||....++..|+.++ ..-+... +
T Consensus 223 wwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~-~d-----TfllLskvY~ridQP~~AL~~~---~~gld~f----P-- 287 (478)
T KOG1129|consen 223 WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PD-----TFLLLSKVYQRIDQPERALLVI---GEGLDSF----P-- 287 (478)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc-hh-----HHHHHHHHHHHhccHHHHHHHH---hhhhhcC----C--
Confidence 44444 599999999999999999999996543 44 2667789999999999998543 3222221 0
Q ss_pred CCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchh
Q 003047 226 GSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNEL 305 (854)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (854)
.+
T Consensus 288 -------------------------------------------------------------~~----------------- 289 (478)
T KOG1129|consen 288 -------------------------------------------------------------FD----------------- 289 (478)
T ss_pred -------------------------------------------------------------ch-----------------
Confidence 00
Q ss_pred hhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Q 003047 306 SRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSN 385 (854)
Q Consensus 306 g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~ 385 (854)
..+..-.+|+|-.+++.++|.+-+|.+++.+ |.|.++.--+|.-|+--++.+-|+.+|.+++.
T Consensus 290 ---------------VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq 352 (478)
T KOG1129|consen 290 ---------------VTYLLGQARIHEAMEQQEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQ 352 (478)
T ss_pred ---------------hhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHH
Confidence 0122224788889999999999999999999 99999999999999999999999999999998
Q ss_pred ccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHH
Q 003047 386 RTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARC 465 (854)
Q Consensus 386 ~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~ 465 (854)
. .- .++..++|+|.|.+-.++++.++..|++|+....+ .+..+.+|||+|.+....|++.-|.+|
T Consensus 353 m-G~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~-------------~~~aaDvWYNlg~vaV~iGD~nlA~rc 417 (478)
T KOG1129|consen 353 M-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ-------------PGQAADVWYNLGFVAVTIGDFNLAKRC 417 (478)
T ss_pred h-cC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC-------------cchhhhhhhccceeEEeccchHHHHHH
Confidence 3 33 35789999999999999999999999999997321 123578999999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHH
Q 003047 466 FQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 466 y~kAL~l~P~~~~aw~~La~~~i 488 (854)
|+-+|.-+|++..++.+||..-.
T Consensus 418 frlaL~~d~~h~ealnNLavL~~ 440 (478)
T KOG1129|consen 418 FRLALTSDAQHGEALNNLAVLAA 440 (478)
T ss_pred HHHHhccCcchHHHHHhHHHHHh
Confidence 99999999999999999996533
No 63
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.45 E-value=3.3e-12 Score=144.21 Aligned_cols=158 Identities=17% Similarity=0.122 Sum_probs=136.2
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHc
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQL 406 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~ 406 (854)
.+..++..|++-+|.-.++.++..+ |.+.++|..+|.+...+++-..||..++++++ .+| .+-.++..|+..|-..
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~-LdP-~NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLE-LDP-TNLEALMALAVSYTNE 366 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHh-cCC-ccHHHHHHHHHHHhhh
Confidence 5778899999999999999999999 99999999999999999999999999999999 899 4789999999999999
Q ss_pred CCHHHHHHHHHHHHHhchhc---c----cCC-----c-cc--------------cccccCCccHHHHHHHHHHHHHCCCc
Q 003047 407 AKYHTSSVFLSKALSNSASL---R----KDK-----P-LK--------------LLTFSQDKSLLITYNCGLQYLACGKP 459 (854)
Q Consensus 407 g~~~eAi~~f~kAL~~~~~l---~----~~~-----~-l~--------------~~~~~~~~~~~~~~nLG~~ll~~Gk~ 459 (854)
|--.+|++++.+=|...+.. . +.+ + +. -...+...++++..-||+.|...|+|
T Consensus 367 g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 367 GLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred hhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 99999999999988874321 0 000 1 00 11123336778888999999999999
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 460 VLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 460 eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
++|++||+.||...|++..+|.+||-.+.
T Consensus 447 draiDcf~~AL~v~Pnd~~lWNRLGAtLA 475 (579)
T KOG1125|consen 447 DRAVDCFEAALQVKPNDYLLWNRLGATLA 475 (579)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHhhHHhc
Confidence 99999999999999999999999996544
No 64
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.43 E-value=6.2e-11 Score=126.19 Aligned_cols=311 Identities=14% Similarity=0.120 Sum_probs=207.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhccc
Q 003047 25 SVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQ 104 (854)
Q Consensus 25 ~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 104 (854)
..++..+.-|-..+-.|+|..|+..|-.+.+.+|++-.++|.-|-+|...+.-.- ++..+.+-++
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~------al~Dl~rVle--------- 100 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKA------ALQDLSRVLE--------- 100 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCcc------chhhHHHHHh---------
Confidence 5677888889999999999999999999999999999999999999987765221 4444444442
Q ss_pred CCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhH
Q 003047 105 TEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTA 184 (854)
Q Consensus 105 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~ 184 (854)
+ .||-.-+....|+++..+|+++.|..=|.++++.-+..+..
T Consensus 101 -----------------------------------l-KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~-- 142 (504)
T KOG0624|consen 101 -----------------------------------L-KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLV-- 142 (504)
T ss_pred -----------------------------------c-CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchh--
Confidence 1 35566688899999999999999999999999954432222
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhh
Q 003047 185 LQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASE 264 (854)
Q Consensus 185 ~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (854)
.+++..+--.++-+..-..+..+.+ ++|.
T Consensus 143 -------~eaqskl~~~~e~~~l~~ql~s~~~-----~GD~--------------------------------------- 171 (504)
T KOG0624|consen 143 -------LEAQSKLALIQEHWVLVQQLKSASG-----SGDC--------------------------------------- 171 (504)
T ss_pred -------HHHHHHHHhHHHHHHHHHHHHHHhc-----CCch---------------------------------------
Confidence 1222222222222211111111111 1111
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 003047 265 NALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREV 344 (854)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~el 344 (854)
.++++|-..+ ++| +.|. ..+..+|+.+|+..|+.++|+..+
T Consensus 172 --------~~ai~~i~~l----lEi--~~Wd-------------------------a~l~~~Rakc~i~~~e~k~AI~Dl 212 (504)
T KOG0624|consen 172 --------QNAIEMITHL----LEI--QPWD-------------------------ASLRQARAKCYIAEGEPKKAIHDL 212 (504)
T ss_pred --------hhHHHHHHHH----Hhc--Ccch-------------------------hHHHHHHHHHHHhcCcHHHHHHHH
Confidence 1222333332 222 2231 236678899999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcC----------------C
Q 003047 345 KLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLA----------------K 408 (854)
Q Consensus 345 k~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g----------------~ 408 (854)
+.+-.+. .++.+.+|-++.+++..|+.+.++.....+|+ .+|+. -..| -.|.+++ +
T Consensus 213 k~askLs--~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK-ldpdH-K~Cf----~~YKklkKv~K~les~e~~ie~~~ 284 (504)
T KOG0624|consen 213 KQASKLS--QDNTEGHYKISQLLYTVGDAENSLKEIRECLK-LDPDH-KLCF----PFYKKLKKVVKSLESAEQAIEEKH 284 (504)
T ss_pred HHHHhcc--ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc-cCcch-hhHH----HHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999 99999999999999999999999999999999 67752 2222 2333433 4
Q ss_pred HHHHHHHHHHHHHhchhc---c-----------cCCc-----cc--cccc-cCCccHHHHHHHHHHHHHCCCcHHHHHHH
Q 003047 409 YHTSSVFLSKALSNSASL---R-----------KDKP-----LK--LLTF-SQDKSLLITYNCGLQYLACGKPVLAARCF 466 (854)
Q Consensus 409 ~~eAi~~f~kAL~~~~~l---~-----------~~~~-----l~--~~~~-~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y 466 (854)
+.++++-.++.|+..|.. + ..+. +. ...+ ..+.+..++...+.+|+....|++|+..|
T Consensus 285 ~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dy 364 (504)
T KOG0624|consen 285 WTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDY 364 (504)
T ss_pred HHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 444444444444433221 0 0000 00 0111 23445788889999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHH
Q 003047 467 QKSSLVFYKQPLLWLRLAEC 486 (854)
Q Consensus 467 ~kAL~l~P~~~~aw~~La~~ 486 (854)
++|+++++++..+..-+-.+
T Consensus 365 e~A~e~n~sn~~~reGle~A 384 (504)
T KOG0624|consen 365 EKALELNESNTRAREGLERA 384 (504)
T ss_pred HHHHhcCcccHHHHHHHHHH
Confidence 99999999998887666544
No 65
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.5e-11 Score=133.99 Aligned_cols=154 Identities=18% Similarity=0.149 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCC----------
Q 003047 321 LKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMG---------- 390 (854)
Q Consensus 321 ~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~---------- 390 (854)
+...+.|+.++...++.+.|..+--..+.++ +.+.+++++.|.+++..++.++|+..|+++++ .+|+
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld--~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~-ldpdh~~sk~~~~~ 245 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLD--ATNAEALYVRGLCLYYNDNADKAINHFQQALR-LDPDHQKSKSASMM 245 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhcc--cchhHHHHhcccccccccchHHHHHHHhhhhc-cChhhhhHHhHhhh
Confidence 3466789999999999999999999999999 99999999999999999999999999999999 6764
Q ss_pred -ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHH
Q 003047 391 -ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKS 469 (854)
Q Consensus 391 -~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kA 469 (854)
..-.++-.-|.-.++.|+|.+|.++|..||.++|.- ..+.+.+|.|++.+...+|+..+|+..++.+
T Consensus 246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n------------~~~naklY~nra~v~~rLgrl~eaisdc~~A 313 (486)
T KOG0550|consen 246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN------------KKTNAKLYGNRALVNIRLGRLREAISDCNEA 313 (486)
T ss_pred HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc------------cchhHHHHHHhHhhhcccCCchhhhhhhhhh
Confidence 122344455888899999999999999999996532 2345788999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHH
Q 003047 470 SLVFYKQPLLWLRLAECCLM 489 (854)
Q Consensus 470 L~l~P~~~~aw~~La~~~i~ 489 (854)
+.|+|....++.+.|+|++.
T Consensus 314 l~iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 314 LKIDSSYIKALLRRANCHLA 333 (486)
T ss_pred hhcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999984
No 66
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=6.5e-09 Score=113.38 Aligned_cols=301 Identities=12% Similarity=-0.022 Sum_probs=208.1
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcC
Q 003047 328 VRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLA 407 (854)
Q Consensus 328 ~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g 407 (854)
++++...+...-+....-...... |+|..-+..+|.+++..|++++|+..|+++.- .+|. .....--.|..+...|
T Consensus 205 Aq~~~~~hs~a~~t~l~le~~~~l--r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~-~dpy-~i~~MD~Ya~LL~~eg 280 (564)
T KOG1174|consen 205 AQMFNFKHSDASQTFLMLHDNTTL--RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC-ANPD-NVEAMDLYAVLLGQEG 280 (564)
T ss_pred HHHHhcccchhhhHHHHHHhhccC--CccHHHHHHHhhhhhhhcCchHHHHHHHHHhh-CChh-hhhhHHHHHHHHHhcc
Confidence 555555555555556665566666 99999999999999999999999999999998 7884 4445555688888899
Q ss_pred CHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 003047 408 KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECC 487 (854)
Q Consensus 408 ~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~ 487 (854)
+++.-.......+.+. +....-|+--|-.++..++++.|+.+-.|+++.+|++..++.-.|..+
T Consensus 281 ~~e~~~~L~~~Lf~~~----------------~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL 344 (564)
T KOG1174|consen 281 GCEQDSALMDYLFAKV----------------KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLL 344 (564)
T ss_pred CHhhHHHHHHHHHhhh----------------hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHH
Confidence 9988888878777762 234566777788888889999999999999999999999988888877
Q ss_pred HHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhc
Q 003047 488 LMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLL 567 (854)
Q Consensus 488 i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~ 567 (854)
+...+ .+.|+..||.|.-|.
T Consensus 345 ~~~~R------------------------------------------------------------~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 345 IALER------------------------------------------------------------HTQAVIAFRTAQMLA 364 (564)
T ss_pred Hhccc------------------------------------------------------------hHHHHHHHHHHHhcc
Confidence 73111 255888888888888
Q ss_pred CCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccC--CchhHHHhhhccchhh
Q 003047 568 NYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKG--GTSLEVIQNSLSYYED 645 (854)
Q Consensus 568 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~--~~~~~~~~~~i~~~~~ 645 (854)
|.... .+++...+ ...++.++++.. .|.=+++++
T Consensus 365 p~rL~-----------~Y~GL~hs--------------------------YLA~~~~kEA~~~An~~~~~~~~------- 400 (564)
T KOG1174|consen 365 PYRLE-----------IYRGLFHS--------------------------YLAQKRFKEANALANWTIRLFQN------- 400 (564)
T ss_pred hhhHH-----------HHHHHHHH--------------------------HHhhchHHHHHHHHHHHHHHhhc-------
Confidence 87442 11111111 011222222211 000011111
Q ss_pred HhHHhhHHHHHHHHHHHH-HHHHHcC-CHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhc
Q 003047 646 VCRRENQMIKQALLANLA-YVELEME-NPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLS 722 (854)
Q Consensus 646 ~~~~~~~~l~~~~l~~la-~v~l~lg-~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~ 722 (854)
... .|..+| .|++..- --..|...+++.|. .|...++-. -.||-+.+-|++.+++..|++.+.
T Consensus 401 ----sA~-----~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~-----~~AEL~~~Eg~~~D~i~LLe~~L~ 466 (564)
T KOG1174|consen 401 ----SAR-----SLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVN-----LIAELCQVEGPTKDIIKLLEKHLI 466 (564)
T ss_pred ----chh-----hhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHH-----HHHHHHHhhCccchHHHHHHHHHh
Confidence 001 122222 3322221 12678888888887 677666654 455666678999999999999993
Q ss_pred CCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003047 723 GGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVT 802 (854)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~ 802 (854)
+- | ...+|.-||.++..++.+.+|...|.
T Consensus 467 --~~--------------------------------------~-----------D~~LH~~Lgd~~~A~Ne~Q~am~~y~ 495 (564)
T KOG1174|consen 467 --IF--------------------------------------P-----------DVNLHNHLGDIMRAQNEPQKAMEYYY 495 (564)
T ss_pred --hc--------------------------------------c-----------ccHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 10 2 35778899999999999999999999
Q ss_pred HHHhhCCCCHHHHHH
Q 003047 803 QALSILPRSTEATLT 817 (854)
Q Consensus 803 ~Al~~~P~~~~a~~l 817 (854)
.||+++|++-.++-.
T Consensus 496 ~ALr~dP~~~~sl~G 510 (564)
T KOG1174|consen 496 KALRQDPKSKRTLRG 510 (564)
T ss_pred HHHhcCccchHHHHH
Confidence 999999998654433
No 67
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.42 E-value=1e-09 Score=134.29 Aligned_cols=133 Identities=9% Similarity=0.010 Sum_probs=95.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcC--CCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhh
Q 003047 659 LANLAYVELEMENPVKALAAARSLLEL--PDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDC 736 (854)
Q Consensus 659 l~~la~v~l~lg~~~~Al~~~~~lL~~--p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~ 736 (854)
+..|...|...|+..+|+..+++.+.. .++...|..+- .+|...|++++|.++|+..... ..+
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll-----~a~~~~g~~~~a~~~f~~m~~~-~g~--------- 458 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVL-----SACRYSGLSEQGWEIFQSMSEN-HRI--------- 458 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHH-----HHHhcCCcHHHHHHHHHHHHHh-cCC---------
Confidence 344556788999999999999999864 33344443333 3788999999999999988731 000
Q ss_pred hhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 003047 737 EQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATL 816 (854)
Q Consensus 737 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~ 816 (854)
.| +...|.-|..+|+..|++++|.+.+++. ...|+. .++.
T Consensus 459 ---------------------------~p-----------~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~~-~~~~ 498 (697)
T PLN03081 459 ---------------------------KP-----------RAMHYACMIELLGREGLLDEAYAMIRRA-PFKPTV-NMWA 498 (697)
T ss_pred ---------------------------CC-----------CccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCCH-HHHH
Confidence 13 3566788999999999999999998874 344543 3455
Q ss_pred HHHHHHHhcCCHHHHHHHHHh-cCCCccccc
Q 003047 817 TAIYVDLMLGKSQEALAKLKY-CNHVRFLPS 846 (854)
Q Consensus 817 l~~y~~L~~G~~~eA~~~lk~-~~~~~~~~~ 846 (854)
.++-.....|+++.|..++++ ....|.++.
T Consensus 499 ~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~ 529 (697)
T PLN03081 499 ALLTACRIHKNLELGRLAAEKLYGMGPEKLN 529 (697)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHhCCCCCCCc
Confidence 555556689999999999988 555555443
No 68
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.41 E-value=4.9e-10 Score=119.47 Aligned_cols=277 Identities=13% Similarity=0.073 Sum_probs=179.9
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCc--cHH----------
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGI--SSM---------- 394 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~--~a~---------- 394 (854)
|+-+|+.+|+-+.|+..+.+++++. |+...+....|.+++.+|.+++|+.-|..++. .+|.. +-.
T Consensus 78 RaT~yLAmGksk~al~Dl~rVlelK--pDF~~ARiQRg~vllK~Gele~A~~DF~~vl~-~~~s~~~~~eaqskl~~~~e 154 (504)
T KOG0624|consen 78 RATVYLAMGKSKAALQDLSRVLELK--PDFMAARIQRGVVLLKQGELEQAEADFDQVLQ-HEPSNGLVLEAQSKLALIQE 154 (504)
T ss_pred HHHHHhhhcCCccchhhHHHHHhcC--ccHHHHHHHhchhhhhcccHHHHHHHHHHHHh-cCCCcchhHHHHHHHHhHHH
Confidence 5666666677666777777777776 77777777777777777777777777776666 34421 011
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh
Q 003047 395 --FNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLV 472 (854)
Q Consensus 395 --~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l 472 (854)
.+.....-+...|++.-||++..+.|++ .+.++..+...+.||...|++..|+.-++.+-.+
T Consensus 155 ~~~l~~ql~s~~~~GD~~~ai~~i~~llEi----------------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL 218 (504)
T KOG0624|consen 155 HWVLVQQLKSASGSGDCQNAIEMITHLLEI----------------QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKL 218 (504)
T ss_pred HHHHHHHHHHHhcCCchhhHHHHHHHHHhc----------------CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 1111223344456666666666666665 3445556666677777777777777777777777
Q ss_pred cCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCC
Q 003047 473 FYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLS 552 (854)
Q Consensus 473 ~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~s 552 (854)
..++...++.+...++ . | ..
T Consensus 219 s~DnTe~~ykis~L~Y---~--------------------v-------------------------------------gd 238 (504)
T KOG0624|consen 219 SQDNTEGHYKISQLLY---T--------------------V-------------------------------------GD 238 (504)
T ss_pred cccchHHHHHHHHHHH---h--------------------h-------------------------------------hh
Confidence 7777777776666555 1 1 12
Q ss_pred hHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCch
Q 003047 553 MPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTS 632 (854)
Q Consensus 553 l~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~ 632 (854)
.+.+....|..|.|+|++..-
T Consensus 239 ~~~sL~~iRECLKldpdHK~C----------------------------------------------------------- 259 (504)
T KOG0624|consen 239 AENSLKEIRECLKLDPDHKLC----------------------------------------------------------- 259 (504)
T ss_pred HHHHHHHHHHHHccCcchhhH-----------------------------------------------------------
Confidence 355777788888999996521
Q ss_pred hHHHhhhccchhhHhH--HhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCh----HHHHHHHHHHHHHHHH
Q 003047 633 LEVIQNSLSYYEDVCR--RENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCS----RIYIFLGHIYAAEALC 705 (854)
Q Consensus 633 ~~~~~~~i~~~~~~~~--~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~----~~~~~la~lY~aeAl~ 705 (854)
.|.+..++. ..+..++ -..+.++|.++++.+++++. .|..+ ..++.+-+.|.
T Consensus 260 -------f~~YKklkKv~K~les~e---------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~----- 318 (504)
T KOG0624|consen 260 -------FPFYKKLKKVVKSLESAE---------QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYR----- 318 (504)
T ss_pred -------HHHHHHHHHHHHHHHHHH---------HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccc-----
Confidence 111111111 1122222 35688999999999999997 45423 23444444444
Q ss_pred hcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHH
Q 003047 706 LLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIA 785 (854)
Q Consensus 706 ~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa 785 (854)
.-+.+-||+....+.+. .+ |. .+.++...|
T Consensus 319 ~d~~~~eAiqqC~evL~--~d--------------------------------------~~----------dv~~l~dRA 348 (504)
T KOG0624|consen 319 EDEQFGEAIQQCKEVLD--ID--------------------------------------PD----------DVQVLCDRA 348 (504)
T ss_pred ccCCHHHHHHHHHHHHh--cC--------------------------------------ch----------HHHHHHHHH
Confidence 46899999999999882 11 32 577888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 003047 786 AMFAMQGEFERAHHFVTQALSILPRST 812 (854)
Q Consensus 786 ~~~~~~g~~e~A~~~~~~Al~~~P~~~ 812 (854)
-+|...-.|+.|++-|++|++.+|++.
T Consensus 349 eA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 349 EAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 999999999999999999999999874
No 69
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.39 E-value=2.6e-10 Score=132.43 Aligned_cols=326 Identities=19% Similarity=0.164 Sum_probs=219.8
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccCCCCC
Q 003047 42 KFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGNIGSKVGLGSKG 121 (854)
Q Consensus 42 ~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 121 (854)
...++++.+++|.+++|+|+.+.|++++=|-..+ ++..++..+++++.
T Consensus 459 ~h~kslqale~av~~d~~dp~~if~lalq~A~~R------~l~sAl~~~~eaL~-------------------------- 506 (799)
T KOG4162|consen 459 LHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQR------QLTSALDYAREALA-------------------------- 506 (799)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH------hHHHHHHHHHHHHH--------------------------
Confidence 4568999999999999999999999996655444 34556777777662
Q ss_pred CCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCH
Q 003047 122 SGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDA 201 (854)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~ 201 (854)
++.-+++..|.-+|.++-.+++|..|+.+.+-.+...+..-.. ...-+.+-...++.
T Consensus 507 ------------------l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l-----~~~~~~i~~~~~~~ 563 (799)
T KOG4162|consen 507 ------------------LNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVL-----MDGKIHIELTFNDR 563 (799)
T ss_pred ------------------hcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhh-----chhhhhhhhhcccH
Confidence 1123467799999999999999999999999888854442111 11122334445666
Q ss_pred HHHHHH----HHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhh
Q 003047 202 FRSADV----LIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLE 277 (854)
Q Consensus 202 ~kA~~~----l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (854)
.+|+++ |..+|+--++.+..+ +| -...+-++-.--++.+..++.+-.+.. ..+. +..-.
T Consensus 564 e~~l~t~~~~L~~we~~~~~q~~~~--~g----~~~~lk~~l~la~~q~~~a~s~sr~ls-------~l~a----~~~~~ 626 (799)
T KOG4162|consen 564 EEALDTCIHKLALWEAEYGVQQTLD--EG----KLLRLKAGLHLALSQPTDAISTSRYLS-------SLVA----SQLKS 626 (799)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhhh--hh----hhhhhhcccccCcccccccchhhHHHH-------HHHH----hhhhh
Confidence 666533 333342222221110 00 001111111122222222221111110 0000 00000
Q ss_pred hhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCH
Q 003047 278 DDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSS 357 (854)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~ 357 (854)
+.... .+.-... . ......-.....+++..+-+++..++.++|.-++..+-.++ |-.+
T Consensus 627 ~~se~---~Lp~s~~---~--------------~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~--~l~~ 684 (799)
T KOG4162|consen 627 AGSEL---KLPSSTV---L--------------PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID--PLSA 684 (799)
T ss_pred ccccc---ccCcccc---c--------------CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc--hhhH
Confidence 11000 0000000 0 00111222335788899999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhchhcccCCccccc
Q 003047 358 LALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSV--FLSKALSNSASLRKDKPLKLL 435 (854)
Q Consensus 358 ~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~--~f~kAL~~~~~l~~~~~l~~~ 435 (854)
..+++.|..+..+|+..+|.+.|.-++. .+|+. ......+|.+|...|+...|.. .+..|+++
T Consensus 685 ~~~~~~G~~~~~~~~~~EA~~af~~Al~-ldP~h-v~s~~Ala~~lle~G~~~la~~~~~L~dalr~------------- 749 (799)
T KOG4162|consen 685 SVYYLRGLLLEVKGQLEEAKEAFLVALA-LDPDH-VPSMTALAELLLELGSPRLAEKRSLLSDALRL------------- 749 (799)
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHHHHh-cCCCC-cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh-------------
Confidence 9999999999999999999999999999 89964 5678889999999999999999 99999998
Q ss_pred cccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHH
Q 003047 436 TFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLL 479 (854)
Q Consensus 436 ~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~a 479 (854)
.+..+++||.+|.++...|+.++|.+||+-++++.+.+|..
T Consensus 750 ---dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~ 790 (799)
T KOG4162|consen 750 ---DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVL 790 (799)
T ss_pred ---CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcc
Confidence 34578999999999999999999999999999999988753
No 70
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.39 E-value=6.3e-10 Score=124.18 Aligned_cols=309 Identities=12% Similarity=-0.005 Sum_probs=210.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDS---SLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNL 399 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~---~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnL 399 (854)
-+..++.+|...++.+.+.+.+.++.... |.+ .+..+..|.++...|++++|++++++++. ..|. ...++..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~-~~P~-~~~a~~~- 82 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQAL--AARATERERAHVEALSAWIAGDLPKALALLEQLLD-DYPR-DLLALKL- 82 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCC-cHHHHHH-
Confidence 34456788888999999999999988888 755 55678899999999999999999999999 6885 4556654
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHH
Q 003047 400 GCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLL 479 (854)
Q Consensus 400 G~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~a 479 (854)
+..+..+|++..+...+.+++.... .. .+.....+..+|.++...|++++|+..|++++.+.|+++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~---~~---------~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~ 150 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWA---PE---------NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWA 150 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccC---cC---------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHH
Confidence 6677777766666666666665310 00 23345677788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHH
Q 003047 480 WLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQC 559 (854)
Q Consensus 480 w~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~ 559 (854)
+..+|.++.. .+ .+++|+.+
T Consensus 151 ~~~la~i~~~---~g---------------------------------------------------------~~~eA~~~ 170 (355)
T cd05804 151 VHAVAHVLEM---QG---------------------------------------------------------RFKEGIAF 170 (355)
T ss_pred HHHHHHHHHH---cC---------------------------------------------------------CHHHHHHH
Confidence 9999998882 20 24779999
Q ss_pred HHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhh
Q 003047 560 LLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNS 639 (854)
Q Consensus 560 l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~ 639 (854)
|++++.+.|.....
T Consensus 171 l~~~l~~~~~~~~~------------------------------------------------------------------ 184 (355)
T cd05804 171 MESWRDTWDCSSML------------------------------------------------------------------ 184 (355)
T ss_pred HHhhhhccCCCcch------------------------------------------------------------------
Confidence 99999888762210
Q ss_pred ccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChHHHHH---H-HHHHHHHHHHhcCCHHHHHH
Q 003047 640 LSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLELPDCSRIYIF---L-GHIYAAEALCLLNRPKEAAE 715 (854)
Q Consensus 640 i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~~p~~~~~~~~---l-a~lY~aeAl~~lgr~~eAl~ 715 (854)
....+..+|.+++.+|++++|+.++++++...+.+..... . ..++. +...|....+..
T Consensus 185 ---------------~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~g~~~~~~~ 246 (355)
T cd05804 185 ---------------RGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWR---LELAGHVDVGDR 246 (355)
T ss_pred ---------------hHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHH---HHhcCCCChHHH
Confidence 0023457788999999999999999998753221111111 1 11111 112222111111
Q ss_pred HHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHH
Q 003047 716 HFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFE 795 (854)
Q Consensus 716 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e 795 (854)
. +... ... . . . .| + +. ........+.++..+|+.+
T Consensus 247 w-~~~~--------------------~~~--~-~----------~---~~--~-~~-----~~~~~~~~a~~~~~~~~~~ 281 (355)
T cd05804 247 W-EDLA--------------------DYA--A-W----------H---FP--D-HG-----LAFNDLHAALALAGAGDKD 281 (355)
T ss_pred H-HHHH--------------------HHH--H-h----------h---cC--c-cc-----chHHHHHHHHHHhcCCCHH
Confidence 1 0000 000 0 0 0 00 0 00 1122235888999999999
Q ss_pred HHHHHHHHHHhhC-C---C-----CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003047 796 RAHHFVTQALSIL-P---R-----STEATLTAIYVDLMLGKSQEALAKLKY 837 (854)
Q Consensus 796 ~A~~~~~~Al~~~-P---~-----~~~a~~l~~y~~L~~G~~~eA~~~lk~ 837 (854)
+|...+..+.... . . ...+..+.++++.++|+.++|++.|..
T Consensus 282 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~ 332 (355)
T cd05804 282 ALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGP 332 (355)
T ss_pred HHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999998865432 1 1 256778888999999999999999986
No 71
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=3.7e-10 Score=120.01 Aligned_cols=290 Identities=16% Similarity=0.093 Sum_probs=218.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 003047 29 TLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGG 108 (854)
Q Consensus 29 ~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 108 (854)
+=+..|+.+.-..+-|+|+++|.+.++.+|...++..-||..+...+. ..++++ |+..+ .+.|+
T Consensus 37 r~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGE------vDRAIR-iHQ~L-------~~spd-- 100 (389)
T COG2956 37 RDYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGE------VDRAIR-IHQTL-------LESPD-- 100 (389)
T ss_pred HHHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcch------HHHHHH-HHHHH-------hcCCC--
Confidence 446789999999999999999999999999999999999966543332 122222 33333 12222
Q ss_pred CCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHH
Q 003047 109 GNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQIC 188 (854)
Q Consensus 109 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~ 188 (854)
........+++.+|.=|...|=|+.|..+|..+... . .++..+.
T Consensus 101 -------------------------------lT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de----~-efa~~Al 144 (389)
T COG2956 101 -------------------------------LTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDE----G-EFAEGAL 144 (389)
T ss_pred -------------------------------CchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc----h-hhhHHHH
Confidence 012234567888999999999999999999888762 2 2344567
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhh
Q 003047 189 LLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALS 268 (854)
Q Consensus 189 l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (854)
--|+++|....+..|||++-..|.+. . ++. .
T Consensus 145 qqLl~IYQ~treW~KAId~A~~L~k~---~----~q~------------------------------~------------ 175 (389)
T COG2956 145 QQLLNIYQATREWEKAIDVAERLVKL---G----GQT------------------------------Y------------ 175 (389)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHc---C----Ccc------------------------------c------------
Confidence 77899999999999999765444433 2 110 0
Q ss_pred hhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 003047 269 RTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAM 348 (854)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al 348 (854)
.++| .. .-..-++.++...++++|..-+++++
T Consensus 176 -----------------~~eI----------------Aq---------------fyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 176 -----------------RVEI----------------AQ---------------FYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred -----------------hhHH----------------HH---------------HHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 0111 00 11223566777889999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhccc
Q 003047 349 NIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRK 428 (854)
Q Consensus 349 ~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~ 428 (854)
..+ |+...+-+.+|.+++..|+|++|++.|+.++. .+|...+.+...|-.+|.++|+.++.+.++.++.+..+
T Consensus 208 qa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e-Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~---- 280 (389)
T COG2956 208 QAD--KKCVRASIILGRVELAKGDYQKAVEALERVLE-QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT---- 280 (389)
T ss_pred hhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC----
Confidence 999 99999999999999999999999999999999 78888889999999999999999999999999999732
Q ss_pred CCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 429 DKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 429 ~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
...+..-++..-....-.+.|-.++.+-+...|. ....++|....+
T Consensus 281 -------------g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt-~~gf~rl~~~~l 326 (389)
T COG2956 281 -------------GADAELMLADLIELQEGIDAAQAYLTRQLRRKPT-MRGFHRLMDYHL 326 (389)
T ss_pred -------------CccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc-HHHHHHHHHhhh
Confidence 1233334566666667788899998888998887 344566665544
No 72
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.38 E-value=4.2e-10 Score=132.86 Aligned_cols=319 Identities=13% Similarity=0.033 Sum_probs=216.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 003047 30 LAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGG 109 (854)
Q Consensus 30 l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 109 (854)
..+.|.-|.+.+++-.|+.-||.+|..+|.|.+.|--+|-+|...++++.+.+ -+.++.
T Consensus 565 W~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlK------vF~kAs--------------- 623 (1238)
T KOG1127|consen 565 WVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALK------VFTKAS--------------- 623 (1238)
T ss_pred hhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHH------hhhhhH---------------
Confidence 44588889999999999999999999999999999999999888887766444 222333
Q ss_pred CCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhh--HHH-
Q 003047 110 NIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETT--ALQ- 186 (854)
Q Consensus 110 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~--~~~- 186 (854)
.+ +|+.....|..|++..-.|.|.+|++.|+.+++.. ..+... ...
T Consensus 624 -----------------------------~L-rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~-s~e~~~q~gLaE 672 (1238)
T KOG1127|consen 624 -----------------------------LL-RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAF-SLERTGQNGLAE 672 (1238)
T ss_pred -----------------------------hc-CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHhhhhHHH
Confidence 12 67788899999999999999999999999988843 222221 111
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhhhccccc-CCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhh
Q 003047 187 ICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVN-QVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASEN 265 (854)
Q Consensus 187 ~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (854)
++..++..+..+|-+.+|. +++|+++...... .-+- |+. ...|--
T Consensus 673 ~~ir~akd~~~~gf~~kav---d~~eksie~f~~~l~h~~-----~~~-----------------------~~~Wi~--- 718 (1238)
T KOG1127|consen 673 SVIRDAKDSAITGFQKKAV---DFFEKSIESFIVSLIHSL-----QSD-----------------------RLQWIV--- 718 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhh---HHHHHHHHHHHHHHHHhh-----hhh-----------------------HHHHHH---
Confidence 2333556667778888887 6778776554221 0000 000 000110
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHH---HHHHHhcC-HHHHH
Q 003047 266 ALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKV---RFLLLTRN-LKHAK 341 (854)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~---~lyl~~~~-~~~A~ 341 (854)
.|+.-..|... +++ ...-...+.+.++ ..++...+ +--+.
T Consensus 719 -----asdac~~f~q~------e~~-------------------------~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~ 762 (1238)
T KOG1127|consen 719 -----ASDACYIFSQE------EPS-------------------------IVNMHYLIILSKQLEKTGALKKNDLLFLGY 762 (1238)
T ss_pred -----HhHHHHHHHHh------ccc-------------------------chHHHHHHHHHHHHHhcccCcchhHHHHHH
Confidence 11222222222 000 0000000111110 01110001 01244
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHH--------hcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHH
Q 003047 342 REVKLAMNIARGKDSSLALFLKSQLEYA--------RRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSS 413 (854)
Q Consensus 342 ~elk~al~~~~~P~~~~a~~lla~ly~~--------~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi 413 (854)
+++-..+.+. .++..|+++|.-|+. +.+...|+.++.++++ .+. ++...||.||.+ ...|.+.-|.
T Consensus 763 ~c~~~hlsl~---~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~-L~a-nn~~~WnaLGVl-sg~gnva~aQ 836 (1238)
T KOG1127|consen 763 ECGIAHLSLA---IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVS-LCA-NNEGLWNALGVL-SGIGNVACAQ 836 (1238)
T ss_pred HHhhHHHHHh---hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHH-Hhh-ccHHHHHHHHHh-hccchhhhhh
Confidence 5554445543 336788888888776 3445689999999999 676 467899999999 5669999999
Q ss_pred HHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 003047 414 VFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALE 492 (854)
Q Consensus 414 ~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~ 492 (854)
.+|-+++.. .+.....|+|+|..++...+++-|-..|.++..++|.+...|...+.|.+..++
T Consensus 837 HCfIks~~s----------------ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ 899 (1238)
T KOG1127|consen 837 HCFIKSRFS----------------EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGR 899 (1238)
T ss_pred hhhhhhhhc----------------cccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHH
Confidence 999999998 355678999999999999999999999999999999999999999998885443
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.30 E-value=6e-09 Score=116.33 Aligned_cols=217 Identities=11% Similarity=-0.041 Sum_probs=157.7
Q ss_pred chhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhccccc
Q 003047 142 EFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVN 221 (854)
Q Consensus 142 ~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~ 221 (854)
||+.+..+..+|.++...+++++|.+.+.++.+..+..-+ .....+..+.++...|++++|+ ..+++++...
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~~~~~a~~~~~~g~~~~A~---~~~~~~l~~~--- 73 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARAT--ERERAHVEALSAWIAGDLPKAL---ALLEQLLDDY--- 73 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHHcCCHHHHH---HHHHHHHHHC---
Confidence 6888999999999999999999999999998886554322 2223555678899999999997 5667776543
Q ss_pred CCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCc
Q 003047 222 QVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLS 301 (854)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (854)
++. .. .+
T Consensus 74 -P~~------------------------------~~-----------------------a~------------------- 80 (355)
T cd05804 74 -PRD------------------------------LL-----------------------AL------------------- 80 (355)
T ss_pred -CCc------------------------------HH-----------------------HH-------------------
Confidence 110 00 00
Q ss_pred cchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 003047 302 SNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLL 381 (854)
Q Consensus 302 ~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~ 381 (854)
+. +.++ .......+..+.+.+.+......+ |+...++..+|.++...|++++|++.++
T Consensus 81 -~~-~~~~------------------~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 138 (355)
T cd05804 81 -KL-HLGA------------------FGLGDFSGMRDHVARVLPLWAPEN--PDYWYLLGMLAFGLEEAGQYDRAEEAAR 138 (355)
T ss_pred -HH-hHHH------------------HHhcccccCchhHHHHHhccCcCC--CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 00 0000 000111233344444444444455 8888899999999999999999999999
Q ss_pred HhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHH
Q 003047 382 ALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVL 461 (854)
Q Consensus 382 kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~ee 461 (854)
+++. ..|. .+.++..+|.+|...|++++|+.+|++++...+. . .......+.++|.++...|++++
T Consensus 139 ~al~-~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~----~--------~~~~~~~~~~la~~~~~~G~~~~ 204 (355)
T cd05804 139 RALE-LNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC----S--------SMLRGHNWWHLALFYLERGDYEA 204 (355)
T ss_pred HHHh-hCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC----C--------cchhHHHHHHHHHHHHHCCCHHH
Confidence 9999 6785 4678888999999999999999999999997321 0 01123456789999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 003047 462 AARCFQKSSLVFYK 475 (854)
Q Consensus 462 Al~~y~kAL~l~P~ 475 (854)
|+.+|++++...|.
T Consensus 205 A~~~~~~~~~~~~~ 218 (355)
T cd05804 205 ALAIYDTHIAPSAE 218 (355)
T ss_pred HHHHHHHHhccccC
Confidence 99999999877763
No 74
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.29 E-value=2.1e-09 Score=127.06 Aligned_cols=330 Identities=15% Similarity=0.105 Sum_probs=227.2
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHc
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQL 406 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~ 406 (854)
++-.|+..+++.+|+.+++.++..+ |++...|.-+|.+|...|+|.-|++.|.++.. .+|. ....-+-.+.+.+.+
T Consensus 568 rG~yyLea~n~h~aV~~fQsALR~d--PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~-LrP~-s~y~~fk~A~~ecd~ 643 (1238)
T KOG1127|consen 568 RGPYYLEAHNLHGAVCEFQSALRTD--PKDYNLWLGLGEAYPESGRYSHALKVFTKASL-LRPL-SKYGRFKEAVMECDN 643 (1238)
T ss_pred ccccccCccchhhHHHHHHHHhcCC--chhHHHHHHHHHHHHhcCceehHHHhhhhhHh-cCcH-hHHHHHHHHHHHHHh
Confidence 6667888999999999999999999 99999999999999999999999999999998 7884 455566689999999
Q ss_pred CCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc--------CCCHH
Q 003047 407 AKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVF--------YKQPL 478 (854)
Q Consensus 407 g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~--------P~~~~ 478 (854)
|+|.+|+..+.+.+......... ...-.+.+...+..+...|=+..|.+.++++++.+ -++..
T Consensus 644 GkYkeald~l~~ii~~~s~e~~~---------q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~ 714 (1238)
T KOG1127|consen 644 GKYKEALDALGLIIYAFSLERTG---------QNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRL 714 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHh---------hhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHH
Confidence 99999999999999873221100 11234556666666666666666666666655543 45667
Q ss_pred HHHHHHHHHHHHHhccccCCCCCCCCCcccc-eeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCC-ChHHH
Q 003047 479 LWLRLAECCLMALEKGLVAPGRSLSDGSEVK-VHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKL-SMPLA 556 (854)
Q Consensus 479 aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~-~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~-sl~~A 556 (854)
.|.-++..|.....- +. + ++ ..+++ ++..+ ..+ . ...+.. -+..|
T Consensus 715 ~Wi~asdac~~f~q~---e~-------~-~vn~h~l~-------il~~q-~e~-~-------------~~l~~~d~l~Lg 761 (1238)
T KOG1127|consen 715 QWIVASDACYIFSQE---EP-------S-IVNMHYLI-------ILSKQ-LEK-T-------------GALKKNDLLFLG 761 (1238)
T ss_pred HHHHHhHHHHHHHHh---cc-------c-chHHHHHH-------HHHHH-HHh-c-------------ccCcchhHHHHH
Confidence 799999988854442 11 1 11 11111 01100 000 0 001100 24567
Q ss_pred HHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHH
Q 003047 557 RQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVI 636 (854)
Q Consensus 557 ~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~ 636 (854)
..|+-..|.+-...-+ |.|+++
T Consensus 762 ~~c~~~hlsl~~~~~~----------------------------WyNLGi------------------------------ 783 (1238)
T KOG1127|consen 762 YECGIAHLSLAIHMYP----------------------------WYNLGI------------------------------ 783 (1238)
T ss_pred HHHhhHHHHHhhccch----------------------------HHHHhH------------------------------
Confidence 7888777776655211 222220
Q ss_pred hhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHH
Q 003047 637 QNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPV-KALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAA 714 (854)
Q Consensus 637 ~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~-~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl 714 (854)
..++. .+.+-+.++-. .|+.++++++. ...+...+..||.+ -+.|.+.=|.
T Consensus 784 ---------------nylr~------f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl------sg~gnva~aQ 836 (1238)
T KOG1127|consen 784 ---------------NYLRY------FLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL------SGIGNVACAQ 836 (1238)
T ss_pred ---------------HHHHH------HHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh------hccchhhhhh
Confidence 01111 11222333333 79999999987 55566777778764 3557787777
Q ss_pred HHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCH
Q 003047 715 EHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEF 794 (854)
Q Consensus 715 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~ 794 (854)
.|+-+.+ .. +|. ....|.|+|.+.....|+
T Consensus 837 HCfIks~--~s--------------------------------------ep~----------~~~~W~NlgvL~l~n~d~ 866 (1238)
T KOG1127|consen 837 HCFIKSR--FS--------------------------------------EPT----------CHCQWLNLGVLVLENQDF 866 (1238)
T ss_pred hhhhhhh--hc--------------------------------------ccc----------chhheeccceeEEecccH
Confidence 7777666 11 122 467789999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003047 795 ERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKY 837 (854)
Q Consensus 795 e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~ 837 (854)
+.|...+.++.+++|.+...++..+++.-..|+.-++..++..
T Consensus 867 E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 867 EHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred HHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 9999999999999999988899999999999998888887765
No 75
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.28 E-value=7.3e-11 Score=113.14 Aligned_cols=122 Identities=14% Similarity=0.090 Sum_probs=110.6
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003047 342 REVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALS 421 (854)
Q Consensus 342 ~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~ 421 (854)
+.+++++..+ |++..+++.+|..++..|++++|+..+++++. .+|. ++.++.++|.+|..+|++++|+.+|++++.
T Consensus 4 ~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 4 ATLKDLLGLD--SEQLEQIYALAYNLYQQGRYDEALKLFQLLAA-YDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hhHHHHHcCC--hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH-hCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567889999 99999999999999999999999999999999 6884 678999999999999999999999999999
Q ss_pred hchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHH
Q 003047 422 NSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRL 483 (854)
Q Consensus 422 ~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~L 483 (854)
. .+.....++++|.++...|++++|+..|+++++++|++...+...
T Consensus 80 ~----------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 125 (135)
T TIGR02552 80 L----------------DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELK 125 (135)
T ss_pred c----------------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHH
Confidence 8 345678999999999999999999999999999999998865433
No 76
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.27 E-value=4.6e-07 Score=103.86 Aligned_cols=296 Identities=17% Similarity=0.093 Sum_probs=225.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
+++.-++.+-..|+...|..-+..+.+.+ |++.+.++..-.+.+...+++.|-.+|.++.. ..| .+.+|+.-..+
T Consensus 586 lwlM~ake~w~agdv~~ar~il~~af~~~--pnseeiwlaavKle~en~e~eraR~llakar~-~sg--TeRv~mKs~~~ 660 (913)
T KOG0495|consen 586 LWLMYAKEKWKAGDVPAARVILDQAFEAN--PNSEEIWLAAVKLEFENDELERARDLLAKARS-ISG--TERVWMKSANL 660 (913)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHhC--CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc-cCC--cchhhHHHhHH
Confidence 44445777778899999999999999999 99999999999999999999999999999988 555 25678777888
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHH
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLR 482 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~ 482 (854)
..-+++.++|+..++++|+.+ |..+..|..+|-++.++++.+.|.+.|..-+...|+.+.+|.-
T Consensus 661 er~ld~~eeA~rllEe~lk~f----------------p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWll 724 (913)
T KOG0495|consen 661 ERYLDNVEEALRLLEEALKSF----------------PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLL 724 (913)
T ss_pred HHHhhhHHHHHHHHHHHHHhC----------------CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHH
Confidence 889999999999999999984 3456789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 003047 483 LAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLN 562 (854)
Q Consensus 483 La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~n 562 (854)
|+..-- +. | .+-.|+..|..
T Consensus 725 LakleE---k~--------------------------------------------~-------------~~~rAR~ildr 744 (913)
T KOG0495|consen 725 LAKLEE---KD--------------------------------------------G-------------QLVRARSILDR 744 (913)
T ss_pred HHHHHH---Hh--------------------------------------------c-------------chhhHHHHHHH
Confidence 986422 10 0 12449999999
Q ss_pred HHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccc
Q 003047 563 ALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSY 642 (854)
Q Consensus 563 AL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~ 642 (854)
|..-+|....-
T Consensus 745 arlkNPk~~~l--------------------------------------------------------------------- 755 (913)
T KOG0495|consen 745 ARLKNPKNALL--------------------------------------------------------------------- 755 (913)
T ss_pred HHhcCCCcchh---------------------------------------------------------------------
Confidence 99988886521
Q ss_pred hhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 003047 643 YEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYL 721 (854)
Q Consensus 643 ~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l 721 (854)
+...-.+-+..|+...|....-++|. .|... .+ . +|+-.+-.++.. ..-.
T Consensus 756 ----------------wle~Ir~ElR~gn~~~a~~lmakALQecp~sg-~L------W-aEaI~le~~~~r-kTks---- 806 (913)
T KOG0495|consen 756 ----------------WLESIRMELRAGNKEQAELLMAKALQECPSSG-LL------W-AEAIWLEPRPQR-KTKS---- 806 (913)
T ss_pred ----------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCccc-hh------H-HHHHHhccCccc-chHH----
Confidence 11112246788999999999999887 55432 22 1 233333333322 0000
Q ss_pred cCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHH
Q 003047 722 SGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFV 801 (854)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~ 801 (854)
.++|..- .. ++.++.-.|..+-...++++|.+.|
T Consensus 807 ---------------~DALkkc--------------------------e~-----dphVllaia~lfw~e~k~~kar~Wf 840 (913)
T KOG0495|consen 807 ---------------IDALKKC--------------------------EH-----DPHVLLAIAKLFWSEKKIEKAREWF 840 (913)
T ss_pred ---------------HHHHHhc--------------------------cC-----CchhHHHHHHHHHHHHHHHHHHHHH
Confidence 0111110 00 3455667899999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCcc
Q 003047 802 TQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKY-CNHVRF 843 (854)
Q Consensus 802 ~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~-~~~~~~ 843 (854)
.+|+.++|+++.++-..--.+++.|.-++-..++.+ ...-|.
T Consensus 841 ~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~ 883 (913)
T KOG0495|consen 841 ERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPT 883 (913)
T ss_pred HHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence 999999999988777777778899999999999988 443343
No 77
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.27 E-value=3.7e-10 Score=118.92 Aligned_cols=207 Identities=13% Similarity=-0.017 Sum_probs=146.4
Q ss_pred chhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhccccc
Q 003047 142 EFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVN 221 (854)
Q Consensus 142 ~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~ 221 (854)
++..+..++++|..++..|+|++|+..|++++...+.- .....+.+.++.+|...|++++|+. .+++++...
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~a~~~la~~~~~~~~~~~A~~---~~~~~l~~~--- 100 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS--PYAEQAQLDLAYAYYKSGDYAEAIA---AADRFIRLH--- 100 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--hhHHHHHHHHHHHHHhcCCHHHHHH---HHHHHHHHC---
Confidence 45577899999999999999999999999999955432 2233468889999999999999985 567666543
Q ss_pred CCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCc
Q 003047 222 QVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLS 301 (854)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (854)
++. +. .. .+
T Consensus 101 -p~~--------------------~~--------~~------------------------------------------~a 109 (235)
T TIGR03302 101 -PNH--------------------PD--------AD------------------------------------------YA 109 (235)
T ss_pred -cCC--------------------Cc--------hH------------------------------------------HH
Confidence 110 00 00 02
Q ss_pred cchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 003047 302 SNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLL 381 (854)
Q Consensus 302 ~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~ 381 (854)
+..+|.+|... -..++...++.++|++.+++++..+ |++..+.-.+..+....+
T Consensus 110 ~~~~g~~~~~~--------------~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~---------- 163 (235)
T TIGR03302 110 YYLRGLSNYNQ--------------IDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRN---------- 163 (235)
T ss_pred HHHHHHHHHHh--------------cccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHH----------
Confidence 22334444221 0112333478899999999999999 999777543332211110
Q ss_pred HhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHH
Q 003047 382 ALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVL 461 (854)
Q Consensus 382 kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~ee 461 (854)
.+ ......+|.+|..+|++.+|+..|++++...++ .+....+++++|.++..+|++++
T Consensus 164 -~~--------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-------------~~~~~~a~~~l~~~~~~lg~~~~ 221 (235)
T TIGR03302 164 -RL--------AGKELYVARFYLKRGAYVAAINRFETVVENYPD-------------TPATEEALARLVEAYLKLGLKDL 221 (235)
T ss_pred -HH--------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC-------------CcchHHHHHHHHHHHHHcCCHHH
Confidence 01 122346899999999999999999999997331 12346899999999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 003047 462 AARCFQKSSLVFYK 475 (854)
Q Consensus 462 Al~~y~kAL~l~P~ 475 (854)
|..+++....-+|+
T Consensus 222 A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 222 AQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHhhCCC
Confidence 99999888777664
No 78
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.27 E-value=1e-10 Score=120.75 Aligned_cols=126 Identities=11% Similarity=0.025 Sum_probs=114.2
Q ss_pred hcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH-HHHcCC--HH
Q 003047 334 TRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI-YYQLAK--YH 410 (854)
Q Consensus 334 ~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i-y~~~g~--~~ 410 (854)
.++.++++..+++++..+ |++..+|+.+|.+|...|++++|+.+|++++. .+|+ ++.++.++|.+ |...|+ ++
T Consensus 52 ~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~-l~P~-~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRNDYDNALLAYRQALQ-LRGE-NAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHhcCCCCcH
Confidence 456678899999999999 99999999999999999999999999999999 7884 68899999987 578888 59
Q ss_pred HHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHH
Q 003047 411 TSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLL 479 (854)
Q Consensus 411 eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~a 479 (854)
+|+..|+++++. .+.+..+++++|.+++..|++++|+.+|++++++.|.+..-
T Consensus 128 ~A~~~l~~al~~----------------dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 128 QTREMIDKALAL----------------DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHHHHHHHh----------------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 999999999998 34567899999999999999999999999999999887644
No 79
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.26 E-value=9.3e-10 Score=112.66 Aligned_cols=113 Identities=18% Similarity=0.080 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccc
Q 003047 358 LALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTF 437 (854)
Q Consensus 358 ~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~ 437 (854)
.+.+.+|.-|++.|++..|.+-++++|+ .||+ ...+|..++.+|.+.|+.+.|-+.|++||.+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~-~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--------------- 98 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALE-HDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSL--------------- 98 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhc---------------
Confidence 4668889999999999999999999999 7995 6889999999999999999999999999999
Q ss_pred cCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHH--hcCCCHHHHHHHHHHHH
Q 003047 438 SQDKSLLITYNCGLQYLACGKPVLAARCFQKSSL--VFYKQPLLWLRLAECCL 488 (854)
Q Consensus 438 ~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~--l~P~~~~aw~~La~~~i 488 (854)
.|.+.++++|.|-.+..+|+|++|...|++|+. .+|..+..|.++|.|..
T Consensus 99 -~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal 150 (250)
T COG3063 99 -APNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCAL 150 (250)
T ss_pred -CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHh
Confidence 455678999999999999999999999999996 46777889999999988
No 80
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.4e-08 Score=110.76 Aligned_cols=401 Identities=14% Similarity=0.073 Sum_probs=257.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhccc
Q 003047 25 SVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQ 104 (854)
Q Consensus 25 ~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 104 (854)
+....-...+..|...++-+.|+..+.+.-.... .|++..-++ ..+..++..-..-+..-+.++...-
T Consensus 95 ~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r-~p~inlMla--~l~~~g~r~~~~vl~ykevvrecp~--------- 162 (564)
T KOG1174|consen 95 GDAEQRRRAAECYRQIGNTDMAIETLLQVPPTLR-SPRINLMLA--RLQHHGSRHKEAVLAYKEVIRECPM--------- 162 (564)
T ss_pred ccHHHHHHHHHHHHHHccchHHHHHHhcCCcccc-chhHHHHHH--HHHhccccccHHHHhhhHHHHhcch---------
Confidence 3455666778888899999999988776543222 344444344 4444443321111111111111110
Q ss_pred CCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHH---HHHHHHHhhcHHHHHHHHHHhhhccCCCch
Q 003047 105 TEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLN---IAVIWFHLHEYAKALSVLEPLYQNIEPIDE 181 (854)
Q Consensus 105 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n---~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e 181 (854)
|...-+++..-+++|....+..+..+ .. ++-..|.|.- .|.+....+-|.-+..++-.....++...+
T Consensus 163 -------aL~~i~~ll~l~v~g~e~~S~~m~~~-~~-~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~Nvh 233 (564)
T KOG1174|consen 163 -------ALQVIEALLELGVNGNEINSLVMHAA-TV-PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEH 233 (564)
T ss_pred -------HHHHHHHHHHHhhcchhhhhhhhhhe-ec-CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHH
Confidence 00000011111222222222222111 11 1222333333 366666666666666666666665555444
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhh
Q 003047 182 TTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVN 261 (854)
Q Consensus 182 ~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (854)
.+..++.+|...|++++|+ ..||+...+. ++.
T Consensus 234 -----Ll~~lak~~~~~Gdn~~a~---~~Fe~~~~~d----py~------------------------------------ 265 (564)
T KOG1174|consen 234 -----LMMALGKCLYYNGDYFQAE---DIFSSTLCAN----PDN------------------------------------ 265 (564)
T ss_pred -----HHHHHhhhhhhhcCchHHH---HHHHHHhhCC----hhh------------------------------------
Confidence 2445789999999999998 6889887653 210
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHH
Q 003047 262 ASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAK 341 (854)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~ 341 (854)
+ . .+++ | +-++-+.|+++.-.
T Consensus 266 -------------------i--------~------------------------~MD~-------Y-a~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 266 -------------------V--------E------------------------AMDL-------Y-AVLLGQEGGCEQDS 286 (564)
T ss_pred -------------------h--------h------------------------hHHH-------H-HHHHHhccCHhhHH
Confidence 0 0 0111 1 22334456666666
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003047 342 REVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALS 421 (854)
Q Consensus 342 ~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~ 421 (854)
.-...+..+. .....-||.-+.+.+...+|+.|+.+-++++. .+|. +..++...|..+.++|++++|+-.|+.|..
T Consensus 287 ~L~~~Lf~~~--~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~-~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 287 ALMDYLFAKV--KYTASHWFVHAQLLYDEKKFERALNFVEKCID-SEPR-NHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred HHHHHHHhhh--hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhc-cCcc-cchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 6666677776 56667788889999999999999999999999 7885 456787789999999999999999999988
Q ss_pred hchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHH-HHHHHHHhccccCCCC
Q 003047 422 NSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLA-ECCLMALEKGLVAPGR 500 (854)
Q Consensus 422 ~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La-~~~i~~~~~~~~e~~~ 500 (854)
+ .|-+.+.|--|-.+|+..|++.||.-.-+.++...|+++....-+| .+|.
T Consensus 363 L----------------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~------------ 414 (564)
T KOG1174|consen 363 L----------------APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLF------------ 414 (564)
T ss_pred c----------------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeec------------
Confidence 7 3446678888888999999999999999999999999888776665 2222
Q ss_pred CCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCC
Q 003047 501 SLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLP 580 (854)
Q Consensus 501 ~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~ 580 (854)
.+ |. .-|.|-+.++.+|.+.|.+..+
T Consensus 415 --------------------------------~d-p~--------------~rEKAKkf~ek~L~~~P~Y~~A------- 440 (564)
T KOG1174|consen 415 --------------------------------PD-PR--------------MREKAKKFAEKSLKINPIYTPA------- 440 (564)
T ss_pred --------------------------------cC-ch--------------hHHHHHHHHHhhhccCCccHHH-------
Confidence 00 00 1377999999999999997642
Q ss_pred CCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHH
Q 003047 581 SNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLA 660 (854)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~ 660 (854)
-.
T Consensus 441 ------------------------------------------------------------------------------V~ 442 (564)
T KOG1174|consen 441 ------------------------------------------------------------------------------VN 442 (564)
T ss_pred ------------------------------------------------------------------------------HH
Confidence 12
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhc
Q 003047 661 NLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLS 722 (854)
Q Consensus 661 ~la~v~l~lg~~~~Al~~~~~lL~~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~ 722 (854)
.+|-.++.-|.+..++...++.|...++...|..||.+..| .+.+.+|+++|..+++
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A-----~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRA-----QNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHH-----hhhHHHHHHHHHHHHh
Confidence 33556777788888888888888755555688888876654 5888888888888884
No 81
>PLN02789 farnesyltranstransferase
Probab=99.25 E-value=2.6e-09 Score=118.13 Aligned_cols=205 Identities=10% Similarity=-0.043 Sum_probs=160.7
Q ss_pred hcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcC-CHHHH
Q 003047 334 TRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLA-KYHTS 412 (854)
Q Consensus 334 ~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g-~~~eA 412 (854)
..++.+|...++.++... +++++|+..+.+++. .+|. +..+|+..|.++..+| +++++
T Consensus 33 ~~~~~~a~~~~ra~l~~~-------------------e~serAL~lt~~aI~-lnP~-~ytaW~~R~~iL~~L~~~l~ee 91 (320)
T PLN02789 33 TPEFREAMDYFRAVYASD-------------------ERSPRALDLTADVIR-LNPG-NYTVWHFRRLCLEALDADLEEE 91 (320)
T ss_pred CHHHHHHHHHHHHHHHcC-------------------CCCHHHHHHHHHHHH-HCch-hHHHHHHHHHHHHHcchhHHHH
Confidence 356666666666666655 899999999999999 7994 6789999999999999 68999
Q ss_pred HHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCc--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 003047 413 SVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKP--VLAARCFQKSSLVFYKQPLLWLRLAECCLMA 490 (854)
Q Consensus 413 i~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~--eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~ 490 (854)
+.++.+++.. .+....+|++.|.++...|++ +++++++.++++++|++..+|..++.++...
T Consensus 92 L~~~~~~i~~----------------npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l 155 (320)
T PLN02789 92 LDFAEDVAED----------------NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTL 155 (320)
T ss_pred HHHHHHHHHH----------------CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 9999999998 456788999999999999984 7889999999999999999999999876621
Q ss_pred HhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCC
Q 003047 491 LEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYP 570 (854)
Q Consensus 491 ~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~ 570 (854)
+ .++.|..++.++|.++|..
T Consensus 156 ~------------------------------------------------------------~~~eeL~~~~~~I~~d~~N 175 (320)
T PLN02789 156 G------------------------------------------------------------GWEDELEYCHQLLEEDVRN 175 (320)
T ss_pred h------------------------------------------------------------hHHHHHHHHHHHHHHCCCc
Confidence 0 1467999999999999885
Q ss_pred cccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHh
Q 003047 571 DLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRE 650 (854)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~ 650 (854)
..+
T Consensus 176 ~sA----------------------------------------------------------------------------- 178 (320)
T PLN02789 176 NSA----------------------------------------------------------------------------- 178 (320)
T ss_pred hhH-----------------------------------------------------------------------------
Confidence 432
Q ss_pred hHHHHHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 003047 651 NQMIKQALLANLAYVELEM---ENP----VKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYL 721 (854)
Q Consensus 651 ~~~l~~~~l~~la~v~l~l---g~~----~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l 721 (854)
+...+++...+ |.+ ..++.+.+++|. .|.+.+++.+++.++... -..+++..+|++.+...+
T Consensus 179 --------W~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~-~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 179 --------WNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDD-KEALVSDPEVSSVCLEVL 248 (320)
T ss_pred --------HHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcC-CcccccchhHHHHHHHhh
Confidence 33344444443 323 478889988886 899999999998876530 011466677888877766
No 82
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.24 E-value=6.6e-11 Score=128.34 Aligned_cols=285 Identities=13% Similarity=0.035 Sum_probs=184.8
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCC
Q 003047 145 VSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVD 224 (854)
Q Consensus 145 ~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~ 224 (854)
.|.-+--.|.-+++.|++.+-+.+|+.+++ +-.-|=..-.+|+.-|++.|+.+++|.||++ |..-=+.+.+....+
T Consensus 16 SCleLalEGERLck~gdcraGv~ff~aA~q-vGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~---yH~hDltlar~lgdk 91 (639)
T KOG1130|consen 16 SCLELALEGERLCKMGDCRAGVDFFKAALQ-VGTEDLSTLSAIYSQLGNAYFYLKDYEKALK---YHTHDLTLARLLGDK 91 (639)
T ss_pred HHHHHHHHHHHHHhccchhhhHHHHHHHHH-hcchHHHHHHHHHHHhcchhhhHhhHHHHHh---hhhhhHHHHHHhcch
Confidence 355555668889999999999999999999 3333333466788889999999999999985 333222222222111
Q ss_pred CCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhh--hhhhhhhhhhhhhhhhhhhccccCCCCCCCC--C
Q 003047 225 SGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALS--RTLSEETLEDDTVLALSSLEISGQNLTRPVG--L 300 (854)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 300 (854)
..+|.+| .|++|.|. ++..|+.+--... +++..+ ++++|+ .
T Consensus 92 ---------------------lGEAKss--------gNLGNtlKv~G~fdeA~~cc~rh-----Ld~are-LgDrv~e~R 136 (639)
T KOG1130|consen 92 ---------------------LGEAKSS--------GNLGNTLKVKGAFDEALTCCFRH-----LDFARE-LGDRVLESR 136 (639)
T ss_pred ---------------------hcccccc--------ccccchhhhhcccchHHHHHHHH-----hHHHHH-HhHHHhhhH
Confidence 1122211 23455555 4455444333333 233222 234454 8
Q ss_pred ccchhhhhhhhcccchhH----------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 003047 301 SSNELSRTLVDRSISTVD----------------LKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKS 364 (854)
Q Consensus 301 ~~~~~g~~~~~~~~~~~~----------------~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla 364 (854)
++.|||.||+.++-.++. +..+..+|.-.+-+. +.+...+... .++-.+|
T Consensus 137 AlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~--------~~lgDr~aqG------Ra~GnLG 202 (639)
T KOG1130|consen 137 ALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS--------EKLGDRLAQG------RAYGNLG 202 (639)
T ss_pred HHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH--------HHhhhHHhhc------chhcccC
Confidence 999999999987543321 122222221111111 1111112222 5677899
Q ss_pred HHHHHhcCHHHHHHHHHHhhhc----cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCC
Q 003047 365 QLEYARRNHRKAIKLLLALSNR----TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQD 440 (854)
Q Consensus 365 ~ly~~~g~~~kAl~~l~kal~~----~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~ 440 (854)
+.|+-.|+|+.||..-+.-+.+ .+......++.|||.+|.-+|+++.|+++|++++.+..++.+..
T Consensus 203 NTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~---------- 272 (639)
T KOG1130|consen 203 NTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRT---------- 272 (639)
T ss_pred ceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchh----------
Confidence 9999999999999998876653 22222356889999999999999999999999999866654221
Q ss_pred ccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHHHh
Q 003047 441 KSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYK------QPLLWLRLAECCLMALE 492 (854)
Q Consensus 441 ~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~------~~~aw~~La~~~i~~~~ 492 (854)
-.+..-|.||+.|.....++.|+.++++=|.|... ..++++.||+.+..++.
T Consensus 273 vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~ 330 (639)
T KOG1130|consen 273 VEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGE 330 (639)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh
Confidence 13567789999999999999999999998887643 34567777776664433
No 83
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.24 E-value=1.6e-06 Score=99.61 Aligned_cols=231 Identities=14% Similarity=0.085 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARG-KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGC 401 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~-P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~ 401 (854)
-++..+..+-..|..--+..-++.++.+.+- .+.-..|+.-++.....+-++=|..+|..+|. ..|. ...+|.....
T Consensus 481 qWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq-vfp~-k~slWlra~~ 558 (913)
T KOG0495|consen 481 QWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ-VFPC-KKSLWLRAAM 558 (913)
T ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh-hccc-hhHHHHHHHH
Confidence 4445556666667777777788888887721 23345678889999999999999999999999 7885 4567876677
Q ss_pred HHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHH
Q 003047 402 IYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWL 481 (854)
Q Consensus 402 iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~ 481 (854)
.-..-|..+.-...|++|+... +...-.|...+.-+...|+...|...+.++++..|++.++|+
T Consensus 559 ~ek~hgt~Esl~Allqkav~~~----------------pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwl 622 (913)
T KOG0495|consen 559 FEKSHGTRESLEALLQKAVEQC----------------PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWL 622 (913)
T ss_pred HHHhcCcHHHHHHHHHHHHHhC----------------CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHH
Confidence 7778899999999999999983 444566777788889999999999999999999999999998
Q ss_pred HHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 003047 482 RLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLL 561 (854)
Q Consensus 482 ~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~ 561 (854)
.--.... .. ..++.|+..|.
T Consensus 623 aavKle~---en---------------------------------------------------------~e~eraR~lla 642 (913)
T KOG0495|consen 623 AAVKLEF---EN---------------------------------------------------------DELERARDLLA 642 (913)
T ss_pred HHHHHhh---cc---------------------------------------------------------ccHHHHHHHHH
Confidence 6553322 10 02477888887
Q ss_pred HHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhcc
Q 003047 562 NALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLS 641 (854)
Q Consensus 562 nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~ 641 (854)
+|-...|. +-
T Consensus 643 kar~~sgT-eR--------------------------------------------------------------------- 652 (913)
T KOG0495|consen 643 KARSISGT-ER--------------------------------------------------------------------- 652 (913)
T ss_pred HHhccCCc-ch---------------------------------------------------------------------
Confidence 77664444 10
Q ss_pred chhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 003047 642 YYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMY 720 (854)
Q Consensus 642 ~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~ 720 (854)
+++..+.+.-.+++..+|+..+++.|. .|++...|..+|.+|. .+++++.|.+.|...
T Consensus 653 ----------------v~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e-----~~~~ie~aR~aY~~G 711 (913)
T KOG0495|consen 653 ----------------VWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEE-----QMENIEMAREAYLQG 711 (913)
T ss_pred ----------------hhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHH-----HHHHHHHHHHHHHhc
Confidence 122334456678888888888888886 7888888877777665 578888888888877
Q ss_pred hc
Q 003047 721 LS 722 (854)
Q Consensus 721 l~ 722 (854)
++
T Consensus 712 ~k 713 (913)
T KOG0495|consen 712 TK 713 (913)
T ss_pred cc
Confidence 74
No 84
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.23 E-value=1.6e-07 Score=107.78 Aligned_cols=254 Identities=17% Similarity=0.113 Sum_probs=169.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcc
Q 003047 24 LSVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGE 103 (854)
Q Consensus 24 ~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 103 (854)
.++-..||.+++..|+.++|...++..+++|...|.+++.+--.|+.-.- -.+-.++...++..+.
T Consensus 4 ~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~------lg~~~ea~~~vr~glr-------- 69 (700)
T KOG1156|consen 4 SPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNC------LGKKEEAYELVRLGLR-------- 69 (700)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhc------ccchHHHHHHHHHHhc--------
Confidence 35567899999999999999999999999999999999999888877442 2334558888887772
Q ss_pred cCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhh
Q 003047 104 QTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETT 183 (854)
Q Consensus 104 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~ 183 (854)
+|+...+-|.-+|.++..-++|++||++|..++++ ++.+..
T Consensus 70 -------------------------------------~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~-~~dN~q- 110 (700)
T KOG1156|consen 70 -------------------------------------NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI-EKDNLQ- 110 (700)
T ss_pred -------------------------------------cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc-CCCcHH-
Confidence 14556678999999999999999999999999994 443332
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhh
Q 003047 184 ALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNAS 263 (854)
Q Consensus 184 ~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (854)
++--|.-+-.+.++|+-..++ ++ +.+... + -..++|.
T Consensus 111 ---ilrDlslLQ~QmRd~~~~~~t--r~-~LLql~----~-------------------------------~~ra~w~-- 147 (700)
T KOG1156|consen 111 ---ILRDLSLLQIQMRDYEGYLET--RN-QLLQLR----P-------------------------------SQRASWI-- 147 (700)
T ss_pred ---HHHHHHHHHHHHHhhhhHHHH--HH-HHHHhh----h-------------------------------hhHHHHH--
Confidence 455566666777777766542 11 122121 0 0011122
Q ss_pred hhhhhhh------hhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHH-HHHHHHHHHHHHhcC
Q 003047 264 ENALSRT------LSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKL-KLQLYKVRFLLLTRN 336 (854)
Q Consensus 264 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~l~l~K~~lyl~~~~ 336 (854)
+-+++.- +.-++++..... + +.+++..++.+ ...+|+.++.+..|.
T Consensus 148 ~~Avs~~L~g~y~~A~~il~ef~~t---------~------------------~~~~s~~~~e~se~~Ly~n~i~~E~g~ 200 (700)
T KOG1156|consen 148 GFAVAQHLLGEYKMALEILEEFEKT---------Q------------------NTSPSKEDYEHSELLLYQNQILIEAGS 200 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---------h------------------ccCCCHHHHHHHHHHHHHHHHHHHccc
Confidence 1122200 111111111111 0 01122333333 467889999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHH
Q 003047 337 LKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYY 404 (854)
Q Consensus 337 ~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~ 404 (854)
+++|.+.+..--..- -+.....-..|.+++..+++++|+.+|...+. ..|+ +..+|..+=.++.
T Consensus 201 ~q~ale~L~~~e~~i--~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~-rnPd-n~~Yy~~l~~~lg 264 (700)
T KOG1156|consen 201 LQKALEHLLDNEKQI--VDKLAFEETKADLLMKLGQLEEAVKVYRRLLE-RNPD-NLDYYEGLEKALG 264 (700)
T ss_pred HHHHHHHHHhhhhHH--HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh-hCch-hHHHHHHHHHHHH
Confidence 998887765544443 45556677899999999999999999999999 6885 4555655544544
No 85
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.22 E-value=4.5e-10 Score=118.32 Aligned_cols=164 Identities=12% Similarity=-0.012 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCc--cHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSS---LALFLKSQLEYARRNHRKAIKLLLALSNRTEMGI--SSMFNN 397 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~---~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~--~a~~~n 397 (854)
..+.++..|+..|++++|+..+++++..+ |+++ .+++.+|.+++..|++++|+..|+++++ ..|+. .+.+++
T Consensus 35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~-~~p~~~~~~~a~~ 111 (235)
T TIGR03302 35 ELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR-LHPNHPDADYAYY 111 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HCcCCCchHHHHH
Confidence 55667889999999999999999999999 9886 5789999999999999999999999999 56642 234688
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHHhchhcccCC-ccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHH
Q 003047 398 NLGCIYYQL--------AKYHTSSVFLSKALSNSASLRKDK-PLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQK 468 (854)
Q Consensus 398 nLG~iy~~~--------g~~~eAi~~f~kAL~~~~~l~~~~-~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~k 468 (854)
.+|.+|... |++++|+..|++++...+.-.... .+..............+.+|..|+..|++.+|+..|++
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 191 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFET 191 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 899999987 889999999999999743210000 00000000000112335789999999999999999999
Q ss_pred HHHhcCCC---HHHHHHHHHHHHH
Q 003047 469 SSLVFYKQ---PLLWLRLAECCLM 489 (854)
Q Consensus 469 AL~l~P~~---~~aw~~La~~~i~ 489 (854)
++..+|+. +.+|+.+|.++..
T Consensus 192 al~~~p~~~~~~~a~~~l~~~~~~ 215 (235)
T TIGR03302 192 VVENYPDTPATEEALARLVEAYLK 215 (235)
T ss_pred HHHHCCCCcchHHHHHHHHHHHHH
Confidence 99998875 5799999999995
No 86
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=1.3e-06 Score=99.71 Aligned_cols=247 Identities=17% Similarity=0.168 Sum_probs=158.3
Q ss_pred hhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhh
Q 003047 21 SGVLSVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARA 100 (854)
Q Consensus 21 ~~~~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 100 (854)
+|-......|+..=-++-..|+|++|++...++|.+.|+++.+.|-..++-+ +..+|.++|.-+++-..
T Consensus 6 ~~~~~~~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValI------q~~ky~~ALk~ikk~~~----- 74 (652)
T KOG2376|consen 6 SGGSDNLEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALI------QLDKYEDALKLIKKNGA----- 74 (652)
T ss_pred cCCcccHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhh------hhhHHHHHHHHHHhcch-----
Confidence 3444455789999999999999999999999999999999999998877754 56788888844443220
Q ss_pred hcccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCc
Q 003047 101 TGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPID 180 (854)
Q Consensus 101 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~ 180 (854)
. +. .....+-.|-+.|++++.++|++.++ ..++.+
T Consensus 75 -----~-----------------------------------~~-~~~~~fEKAYc~Yrlnk~Dealk~~~----~~~~~~ 109 (652)
T KOG2376|consen 75 -----L-----------------------------------LV-INSFFFEKAYCEYRLNKLDEALKTLK----GLDRLD 109 (652)
T ss_pred -----h-----------------------------------hh-cchhhHHHHHHHHHcccHHHHHHHHh----cccccc
Confidence 0 01 11122577889999999999999996 344455
Q ss_pred hhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhh
Q 003047 181 ETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATV 260 (854)
Q Consensus 181 e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (854)
+. ...+-+++...+++|++|++||.++-+--. ++. | .+...+.
T Consensus 110 ~~----ll~L~AQvlYrl~~ydealdiY~~L~kn~~------dd~------------------------d---~~~r~nl 152 (652)
T KOG2376|consen 110 DK----LLELRAQVLYRLERYDEALDIYQHLAKNNS------DDQ------------------------D---EERRANL 152 (652)
T ss_pred hH----HHHHHHHHHHHHhhHHHHHHHHHHHHhcCC------chH------------------------H---HHHHHHH
Confidence 43 456677999999999999988766632210 110 0 0111000
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHH
Q 003047 261 NASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHA 340 (854)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A 340 (854)
.++...+. .. .. ...+...+....+-+..+-+++..|++.+|
T Consensus 153 ----~a~~a~l~-----~~-~~----------------------------q~v~~v~e~syel~yN~Ac~~i~~gky~qA 194 (652)
T KOG2376|consen 153 ----LAVAAALQ-----VQ-LL----------------------------QSVPEVPEDSYELLYNTACILIENGKYNQA 194 (652)
T ss_pred ----HHHHHhhh-----HH-HH----------------------------HhccCCCcchHHHHHHHHHHHHhcccHHHH
Confidence 11110000 00 00 000001122334566678889999999999
Q ss_pred HHHHHHHHHhcC-----CCCC--------HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCC---ccHHHHHHH
Q 003047 341 KREVKLAMNIAR-----GKDS--------SLALFLKSQLEYARRNHRKAIKLLLALSNRTEMG---ISSMFNNNL 399 (854)
Q Consensus 341 ~~elk~al~~~~-----~P~~--------~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~---~~a~~~nnL 399 (854)
++-+.+++.+.+ +-.+ ....+.++.++..+|+.++|.++|..+++. +|. ..+.+-|||
T Consensus 195 ~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~-~~~D~~~~Av~~NNL 268 (652)
T KOG2376|consen 195 IELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR-NPADEPSLAVAVNNL 268 (652)
T ss_pred HHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-cCCCchHHHHHhcch
Confidence 999999955442 0111 134577888888999999999999888883 222 234455555
No 87
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.16 E-value=6.1e-07 Score=112.92 Aligned_cols=313 Identities=14% Similarity=0.030 Sum_probs=214.0
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhcCCCC---------CHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCc----c
Q 003047 326 YKVRFLLLTRNLKHAKREVKLAMNIARGKD---------SSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGI----S 392 (854)
Q Consensus 326 ~K~~lyl~~~~~~~A~~elk~al~~~~~P~---------~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~----~ 392 (854)
.++.++...+++++|.+.+..+.... +. .......+|.++...|++++|..++++++.. .+.. .
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~ 490 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQEL--KDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAE-LPLTWYYSR 490 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhc--cccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCccHHHH
Confidence 45566678899999998888887654 21 1234566889999999999999999999872 2221 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh
Q 003047 393 SMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLV 472 (854)
Q Consensus 393 a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l 472 (854)
..+++.+|.++...|++++|..+|++++...+.... ......++.++|.+++..|++++|..++++++.+
T Consensus 491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~----------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDV----------YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc----------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 346678999999999999999999999987443211 0112346678999999999999999999999987
Q ss_pred cCCC--------HHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCC
Q 003047 473 FYKQ--------PLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLG 544 (854)
Q Consensus 473 ~P~~--------~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~ 544 (854)
.... ..++..+|.++. ..
T Consensus 561 ~~~~~~~~~~~~~~~~~~la~~~~---~~--------------------------------------------------- 586 (903)
T PRK04841 561 IEEQHLEQLPMHEFLLRIRAQLLW---EW--------------------------------------------------- 586 (903)
T ss_pred HHHhccccccHHHHHHHHHHHHHH---Hh---------------------------------------------------
Confidence 4331 111223333322 10
Q ss_pred CCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCc
Q 003047 545 SDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDA 624 (854)
Q Consensus 545 ~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~ 624 (854)
..++.|..++++++.+.......
T Consensus 587 ------G~~~~A~~~~~~al~~~~~~~~~--------------------------------------------------- 609 (903)
T PRK04841 587 ------ARLDEAEQCARKGLEVLSNYQPQ--------------------------------------------------- 609 (903)
T ss_pred ------cCHHHHHHHHHHhHHhhhccCch---------------------------------------------------
Confidence 12477999999998876542110
Q ss_pred ccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-CC--ChHHHHHHHHHHHH
Q 003047 625 KDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLEL-PD--CSRIYIFLGHIYAA 701 (854)
Q Consensus 625 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~~-p~--~~~~~~~la~lY~a 701 (854)
.....+..++.++...|++..|...+.+++.. .. ..............
T Consensus 610 -----------------------------~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 610 -----------------------------QQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred -----------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 00023456788999999999999999998652 11 11111111111112
Q ss_pred HHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHH
Q 003047 702 EALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLY 781 (854)
Q Consensus 702 eAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~ 781 (854)
..+...|+.++|...+..... .... .+ ......+
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~--~~~~-----------------------------------~~---------~~~~~~~ 694 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPK--PEFA-----------------------------------NN---------HFLQGQW 694 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCC--CCCc-----------------------------------cc---------hhHHHHH
Confidence 344568999999999877662 1000 00 0023345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003047 782 VNIAAMFAMQGEFERAHHFVTQALSILPR------STEATLTAIYVDLMLGKSQEALAKLKY 837 (854)
Q Consensus 782 ~NLa~~~~~~g~~e~A~~~~~~Al~~~P~------~~~a~~l~~y~~L~~G~~~eA~~~lk~ 837 (854)
.++|.++..+|++++|...+++++..... ...++.+++..+.+.|+.++|...+++
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~ 756 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLE 756 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 78999999999999999999999886322 245778888889999999999999887
No 88
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.16 E-value=6.1e-10 Score=109.12 Aligned_cols=111 Identities=6% Similarity=-0.169 Sum_probs=101.5
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHH
Q 003047 326 YKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ 405 (854)
Q Consensus 326 ~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~ 405 (854)
.++.++...|++++|.+.++.++.++ |++..+++.+|.++...|++++|+..|++++. .+|. .+.+++++|.+|..
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~-l~p~-~~~a~~~lg~~l~~ 104 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALM-LDAS-HPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cCCC-CcHHHHHHHHHHHH
Confidence 46888899999999999999999999 99999999999999999999999999999999 7895 67899999999999
Q ss_pred cCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHC
Q 003047 406 LAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLAC 456 (854)
Q Consensus 406 ~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~ 456 (854)
+|++++|+..|++++.. .|.++..+.++|.+....
T Consensus 105 ~g~~~eAi~~~~~Al~~----------------~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM----------------SYADASWSEIRQNAQIMV 139 (144)
T ss_pred cCCHHHHHHHHHHHHHh----------------CCCChHHHHHHHHHHHHH
Confidence 99999999999999998 355677888888876554
No 89
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.11 E-value=1.3e-09 Score=106.80 Aligned_cols=107 Identities=12% Similarity=0.071 Sum_probs=96.6
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccc
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLK 433 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~ 433 (854)
|+..+..+..|..++..|++++|.++|+-+.. .+| .+...|++||.++..+|+|.+||..|.+|+.+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~-~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L----------- 98 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTI-YDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI----------- 98 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----------
Confidence 45667889999999999999999999999999 799 57889999999999999999999999999998
Q ss_pred cccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHH
Q 003047 434 LLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPL 478 (854)
Q Consensus 434 ~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~ 478 (854)
.+.++..++|+|.|++..|+.+.|.++|+.++.+..+.|.
T Consensus 99 -----~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 99 -----KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred -----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChh
Confidence 3456789999999999999999999999999999955543
No 90
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.10 E-value=7.4e-10 Score=117.41 Aligned_cols=111 Identities=17% Similarity=0.095 Sum_probs=101.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccC
Q 003047 360 LFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQ 439 (854)
Q Consensus 360 ~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~ 439 (854)
+=..|+-.+..++|++|+..|.++|. .+| .++.+|.|.+.+|.++|.|+.|++-.++||.+ .
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~-l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i----------------D 145 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIE-LDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSI----------------D 145 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh-cCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhc----------------C
Confidence 34568999999999999999999999 799 47889999999999999999999999999999 3
Q ss_pred CccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 440 DKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 440 ~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
|....+|-.||.+|+.+|++++|++.|+++|+++|++...|.+|..+-.
T Consensus 146 p~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~ 194 (304)
T KOG0553|consen 146 PHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQ 194 (304)
T ss_pred hHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHH
Confidence 4557899999999999999999999999999999999999999986644
No 91
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.08 E-value=2.8e-09 Score=128.54 Aligned_cols=140 Identities=11% Similarity=-0.042 Sum_probs=121.1
Q ss_pred HHHHHhcCHH---HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHH
Q 003047 329 RFLLLTRNLK---HAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ 405 (854)
Q Consensus 329 ~lyl~~~~~~---~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~ 405 (854)
++....+... +++.++.....-. |+++++++++|.+....|++++|+..++.++. ..|+ +..++.+++.++.+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~-~~Pd-~~~a~~~~a~~L~~ 132 (694)
T PRK15179 57 QVLERHAAVHKPAAALPELLDYVRRY--PHTELFQVLVARALEAAHRSDEGLAVWRGIHQ-RFPD-SSEAFILMLRGVKR 132 (694)
T ss_pred HHHHHhhhhcchHhhHHHHHHHHHhc--cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-hCCC-cHHHHHHHHHHHHH
Confidence 3444444333 4555556666667 99999999999999999999999999999999 7895 67889999999999
Q ss_pred cCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 003047 406 LAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAE 485 (854)
Q Consensus 406 ~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~ 485 (854)
++++++|+..++++|.. .|.++..++.+|.++.++|+|++|+++|++++...|+++.+|..+|.
T Consensus 133 ~~~~eeA~~~~~~~l~~----------------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~ 196 (694)
T PRK15179 133 QQGIEAGRAEIELYFSG----------------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQ 196 (694)
T ss_pred hccHHHHHHHHHHHhhc----------------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 99999999999999998 45678899999999999999999999999999999999999999999
Q ss_pred HHH
Q 003047 486 CCL 488 (854)
Q Consensus 486 ~~i 488 (854)
++.
T Consensus 197 ~l~ 199 (694)
T PRK15179 197 SLT 199 (694)
T ss_pred HHH
Confidence 888
No 92
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=6.9e-09 Score=107.46 Aligned_cols=141 Identities=21% Similarity=0.085 Sum_probs=128.5
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcC
Q 003047 328 VRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLA 407 (854)
Q Consensus 328 ~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g 407 (854)
+-..+-.++++-|..+++.+...+ |......-+.|..+-..|++++|+++|+..+. .||. +..++-..-.+...+|
T Consensus 59 ~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~-ddpt-~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 59 FIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLE-DDPT-DTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhc-cCcc-hhHHHHHHHHHHHHcC
Confidence 334566789999999999999999 99999999999999999999999999999999 7885 4566777778889999
Q ss_pred CHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 003047 408 KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECC 487 (854)
Q Consensus 408 ~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~ 487 (854)
+.-+||+.+.+-|..+ ..+.++|..++..|+..|+|+.|.-||++.+-+.|-+|..+.++|+++
T Consensus 135 K~l~aIk~ln~YL~~F----------------~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~ 198 (289)
T KOG3060|consen 135 KNLEAIKELNEYLDKF----------------MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVL 198 (289)
T ss_pred CcHHHHHHHHHHHHHh----------------cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 9999999999999874 245799999999999999999999999999999999999999999998
Q ss_pred H
Q 003047 488 L 488 (854)
Q Consensus 488 i 488 (854)
+
T Consensus 199 Y 199 (289)
T KOG3060|consen 199 Y 199 (289)
T ss_pred H
Confidence 8
No 93
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=3.3e-09 Score=115.97 Aligned_cols=291 Identities=13% Similarity=-0.019 Sum_probs=211.7
Q ss_pred HHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCH
Q 003047 330 FLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKY 409 (854)
Q Consensus 330 lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~ 409 (854)
.+..++.+.+|+..+..+++.. |++..+|...+..++..|+|++|+-..++.++ .+|. ....+...|.+|..++..
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r-~kd~-~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVR-LKDG-FSKGQLREGQCHLALSDL 133 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhhee-cCCC-ccccccchhhhhhhhHHH
Confidence 3445678888999999999999 99999999999999999999999999999998 6774 455777789999999999
Q ss_pred HHHHHHHHHHHH--hchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 003047 410 HTSSVFLSKALS--NSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECC 487 (854)
Q Consensus 410 ~eAi~~f~kAL~--~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~ 487 (854)
.+|...|+-.=. ....+...+++.......|.-....+.-+.|+...|++++|...-...+++++.+..+.+-.|.|+
T Consensus 134 i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~ 213 (486)
T KOG0550|consen 134 IEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCL 213 (486)
T ss_pred HHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhccccc
Confidence 999988772110 000011001111111111222345566799999999999999999999999999999887777665
Q ss_pred HHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhc
Q 003047 488 LMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLL 567 (854)
Q Consensus 488 i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~ 567 (854)
.. . ...+-|+.+|++||.+.
T Consensus 214 yy--------------------------------------------~----------------~~~~ka~~hf~qal~ld 233 (486)
T KOG0550|consen 214 YY--------------------------------------------N----------------DNADKAINHFQQALRLD 233 (486)
T ss_pred cc--------------------------------------------c----------------cchHHHHHHHhhhhccC
Confidence 51 0 02366999999999999
Q ss_pred CCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHh
Q 003047 568 NYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVC 647 (854)
Q Consensus 568 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~ 647 (854)
|.+... +++ .|
T Consensus 234 pdh~~s-----------------------k~~------------~~---------------------------------- 244 (486)
T KOG0550|consen 234 PDHQKS-----------------------KSA------------SM---------------------------------- 244 (486)
T ss_pred hhhhhH-----------------------HhH------------hh----------------------------------
Confidence 995431 000 00
Q ss_pred HHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHH--HHHHHHhcCCHHHHHHHHHhhhcCC
Q 003047 648 RRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIY--AAEALCLLNRPKEAAEHFSMYLSGG 724 (854)
Q Consensus 648 ~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY--~aeAl~~lgr~~eAl~~l~~~l~~~ 724 (854)
++..| -.+-.-|.-....|++..|-++|.++|. +|.+. ..++++| .|.+.+.+||..||+...+.++.
T Consensus 245 --~~k~l--e~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~---~~naklY~nra~v~~rLgrl~eaisdc~~Al~-- 315 (486)
T KOG0550|consen 245 --MPKKL--EVKKERGNDAFKNGNYRKAYECYTEALNIDPSNK---KTNAKLYGNRALVNIRLGRLREAISDCNEALK-- 315 (486)
T ss_pred --hHHHH--HHHHhhhhhHhhccchhHHHHHHHHhhcCCcccc---chhHHHHHHhHhhhcccCCchhhhhhhhhhhh--
Confidence 00011 1122346678899999999999999997 55532 3345555 35567889999999999999983
Q ss_pred CCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003047 725 DNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQA 804 (854)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~A 804 (854)
+| |. -..++.--|.+|...++|++|.+-|++|
T Consensus 316 iD--------------------------------------~s----------yikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 316 ID--------------------------------------SS----------YIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred cC--------------------------------------HH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 22 5677777999999999999999999999
Q ss_pred HhhCCC
Q 003047 805 LSILPR 810 (854)
Q Consensus 805 l~~~P~ 810 (854)
+...-+
T Consensus 348 ~q~~~s 353 (486)
T KOG0550|consen 348 MQLEKD 353 (486)
T ss_pred Hhhccc
Confidence 887654
No 94
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.05 E-value=6.3e-08 Score=111.07 Aligned_cols=243 Identities=16% Similarity=0.052 Sum_probs=180.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccc
Q 003047 358 LALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTF 437 (854)
Q Consensus 358 ~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~ 437 (854)
.++|..+.=.+..++|++.++..+.+|+ ..|. .+..+-..|..+..+|+-++|..+.+.++..+
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~-k~~e-HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-------------- 71 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILK-KFPE-HGESLAMKGLTLNCLGKKEEAYELVRLGLRND-------------- 71 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH-hCCc-cchhHHhccchhhcccchHHHHHHHHHHhccC--------------
Confidence 5677788888889999999999999999 6774 56677778999999999999999999999872
Q ss_pred cCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccc
Q 003047 438 SQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGK 517 (854)
Q Consensus 438 ~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~ 517 (854)
.....+|.-+|..+-..++|++|+.||+.|+.+.|+|..+|.-|+...++.... +
T Consensus 72 --~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~---~-------------------- 126 (700)
T KOG1156|consen 72 --LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDY---E-------------------- 126 (700)
T ss_pred --cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh---h--------------------
Confidence 345678999999999999999999999999999999999999999776632221 0
Q ss_pred cceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccc
Q 003047 518 WRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSK 597 (854)
Q Consensus 518 ~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (854)
| ....-.+-|.+.|...
T Consensus 127 --------------------~-----------------~~~tr~~LLql~~~~r-------------------------- 143 (700)
T KOG1156|consen 127 --------------------G-----------------YLETRNQLLQLRPSQR-------------------------- 143 (700)
T ss_pred --------------------h-----------------HHHHHHHHHHhhhhhH--------------------------
Confidence 0 1111122233444432
Q ss_pred cccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 003047 598 NLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALA 677 (854)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~ 677 (854)
+.|...|..+..+|++..|+.
T Consensus 144 -----------------------------------------------------------a~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 144 -----------------------------------------------------------ASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred -----------------------------------------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 124455777888899999998
Q ss_pred HHHHHHc----CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCC
Q 003047 678 AARSLLE----LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGG 753 (854)
Q Consensus 678 ~~~~lL~----~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 753 (854)
....... .|+.-..-+....+|....+...|++++|++++...-.++.|
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D--------------------------- 217 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD--------------------------- 217 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH---------------------------
Confidence 8877664 233334445566788888899999999999999765521111
Q ss_pred CCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 003047 754 PAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTE 813 (854)
Q Consensus 754 ~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~ 813 (854)
.-...---|..+..++++++|...++..+..+||+..
T Consensus 218 -----------------------kla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~ 254 (700)
T KOG1156|consen 218 -----------------------KLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLD 254 (700)
T ss_pred -----------------------HHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHH
Confidence 0111122566778889999999999999999999843
No 95
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.05 E-value=6.2e-09 Score=107.57 Aligned_cols=130 Identities=12% Similarity=0.050 Sum_probs=106.2
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcC
Q 003047 328 VRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLA 407 (854)
Q Consensus 328 ~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g 407 (854)
.-+|+..|++.......++... |.. -+...++.++++..+++++. .+|+ +...|..||.+|..+|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~~---------~~~~~~~~~~~i~~l~~~L~-~~P~-~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PLH---------QFASQQTPEAQLQALQDKIR-ANPQ-NSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----ccc---------cccCchhHHHHHHHHHHHHH-HCCC-CHHHHHHHHHHHHHCC
Confidence 4478888888765444332221 110 11136788999999999999 7895 6889999999999999
Q ss_pred CHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHH-HHCCC--cHHHHHHHHHHHHhcCCCHHHHHHHH
Q 003047 408 KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQY-LACGK--PVLAARCFQKSSLVFYKQPLLWLRLA 484 (854)
Q Consensus 408 ~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~l-l~~Gk--~eeAl~~y~kAL~l~P~~~~aw~~La 484 (854)
++++|+..|++++.+ .+.+..+++++|.++ ...|+ +++|.++|+++++++|+++.+|+.||
T Consensus 88 ~~~~A~~a~~~Al~l----------------~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA 151 (198)
T PRK10370 88 DYDNALLAYRQALQL----------------RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLA 151 (198)
T ss_pred CHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 999999999999998 356788999999985 67788 59999999999999999999999999
Q ss_pred HHHH
Q 003047 485 ECCL 488 (854)
Q Consensus 485 ~~~i 488 (854)
.++.
T Consensus 152 ~~~~ 155 (198)
T PRK10370 152 SDAF 155 (198)
T ss_pred HHHH
Confidence 9887
No 96
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.04 E-value=6e-09 Score=125.66 Aligned_cols=142 Identities=9% Similarity=-0.120 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
..+.-+++....|.+++|.+-++.++++. |++..+++.++.++.+.+++++|+..+++++. .+| +++.+++.+|.+
T Consensus 88 ~~~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~-~~p-~~~~~~~~~a~~ 163 (694)
T PRK15179 88 FQVLVARALEAAHRSDEGLAVWRGIHQRF--PDSSEAFILMLRGVKRQQGIEAGRAEIELYFS-GGS-SSAREILLEAKS 163 (694)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh-cCC-CCHHHHHHHHHH
Confidence 34445888999999999999999999999 99999999999999999999999999999999 799 478999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHH
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLR 482 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~ 482 (854)
+.++|+|++|+.+|++++.. .+..+.++.++|.++...|+.++|..+|+++++...+..+.+.+
T Consensus 164 l~~~g~~~~A~~~y~~~~~~----------------~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQ----------------HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHhcchHHHHHHHHHHHhc----------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 99999999999999999985 34567899999999999999999999999999999888777555
Q ss_pred HH
Q 003047 483 LA 484 (854)
Q Consensus 483 La 484 (854)
+.
T Consensus 228 ~~ 229 (694)
T PRK15179 228 RL 229 (694)
T ss_pred HH
Confidence 43
No 97
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=1.7e-06 Score=98.73 Aligned_cols=149 Identities=16% Similarity=0.110 Sum_probs=113.0
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcc-----------------
Q 003047 325 LYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRT----------------- 387 (854)
Q Consensus 325 l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~----------------- 387 (854)
+.|+=|..+.++.++|+++++ ..+ +.+...+.+.|++.+.+|+|++|+++|+.+++-.
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~--~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a 157 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLD--RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA 157 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---ccc--ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 446667788999999999998 566 7777899999999999999999999999986510
Q ss_pred ------------CCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh-cccCCccccccccCCccHHHHHHHHHHHH
Q 003047 388 ------------EMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSAS-LRKDKPLKLLTFSQDKSLLITYNCGLQYL 454 (854)
Q Consensus 388 ------------dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~-l~~~~~l~~~~~~~~~~~~~~~nLG~~ll 454 (854)
-|...-..++|.+|++...|+|.+|++.+++|+.+.+. +...+.-+ .. ....-..+...++-+|.
T Consensus 158 ~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~e-Ee-ie~el~~IrvQlayVlQ 235 (652)
T KOG2376|consen 158 ALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNE-EE-IEEELNPIRVQLAYVLQ 235 (652)
T ss_pred hhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccch-hh-HHHHHHHHHHHHHHHHH
Confidence 12223456778999999999999999999999988654 22111000 00 00112345567899999
Q ss_pred HCCCcHHHHHHHHHHHHhcCCCHHHH
Q 003047 455 ACGKPVLAARCFQKSSLVFYKQPLLW 480 (854)
Q Consensus 455 ~~Gk~eeAl~~y~kAL~l~P~~~~aw 480 (854)
.+|+.++|...|...+..+|-+....
T Consensus 236 ~~Gqt~ea~~iy~~~i~~~~~D~~~~ 261 (652)
T KOG2376|consen 236 LQGQTAEASSIYVDIIKRNPADEPSL 261 (652)
T ss_pred HhcchHHHHHHHHHHHHhcCCCchHH
Confidence 99999999999999999998876543
No 98
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.02 E-value=4.3e-07 Score=97.13 Aligned_cols=298 Identities=17% Similarity=0.106 Sum_probs=217.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCC----ccHHHHHHH
Q 003047 324 QLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMG----ISSMFNNNL 399 (854)
Q Consensus 324 ~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~----~~a~~~nnL 399 (854)
.++++--++..++-++|...+-.+++.+ |...++++.+|+++-.+|..++||.+-+..+.. |+ ....++..|
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s--pdlT~~qr~lAl~qL 113 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES--PDLTFEQRLLALQQL 113 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC--CCCchHHHHHHHHHH
Confidence 3456777888999999999999999999 999999999999999999999999999998873 32 234567778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHH
Q 003047 400 GCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLL 479 (854)
Q Consensus 400 G~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~a 479 (854)
|.=|...|=++.|...|...... ......++-.|-.+|....++++|+++-++...+.|....
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de----------------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~- 176 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDE----------------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYR- 176 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcc----------------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccch-
Confidence 99999999999999999987764 1224567888999999999999999999999999998655
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHH
Q 003047 480 WLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQC 559 (854)
Q Consensus 480 w~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~ 559 (854)
..+|.+|..+-... . +....+.|+.-
T Consensus 177 -~eIAqfyCELAq~~-------------------------------------~----------------~~~~~d~A~~~ 202 (389)
T COG2956 177 -VEIAQFYCELAQQA-------------------------------------L----------------ASSDVDRAREL 202 (389)
T ss_pred -hHHHHHHHHHHHHH-------------------------------------h----------------hhhhHHHHHHH
Confidence 56788877433320 0 00124669999
Q ss_pred HHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhh
Q 003047 560 LLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNS 639 (854)
Q Consensus 560 l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~ 639 (854)
+.+|+.-+|+..-+
T Consensus 203 l~kAlqa~~~cvRA------------------------------------------------------------------ 216 (389)
T COG2956 203 LKKALQADKKCVRA------------------------------------------------------------------ 216 (389)
T ss_pred HHHHHhhCccceeh------------------------------------------------------------------
Confidence 99999988885421
Q ss_pred ccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCC-ChHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 003047 640 LSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPD-CSRIYIFLGHIYAAEALCLLNRPKEAAEHF 717 (854)
Q Consensus 640 i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~-~~~~~~~la~lY~aeAl~~lgr~~eAl~~l 717 (854)
+ ..+|.|.+..|+|..|++.++.+++ .|+ .+.+.-.|.. ++..+|++++.+.+|
T Consensus 217 -----------------s--i~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~-----~Y~~lg~~~~~~~fL 272 (389)
T COG2956 217 -----------------S--IILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYE-----CYAQLGKPAEGLNFL 272 (389)
T ss_pred -----------------h--hhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHH-----HHHHhCCHHHHHHHH
Confidence 1 1357899999999999999999998 444 3444444443 566899999999999
Q ss_pred HhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHH
Q 003047 718 SMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERA 797 (854)
Q Consensus 718 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A 797 (854)
.++.. .. + .+.+-.-|+..-..+.=.++|
T Consensus 273 ~~~~~--~~--------------------------------------~-----------g~~~~l~l~~lie~~~G~~~A 301 (389)
T COG2956 273 RRAME--TN--------------------------------------T-----------GADAELMLADLIELQEGIDAA 301 (389)
T ss_pred HHHHH--cc--------------------------------------C-----------CccHHHHHHHHHHHhhChHHH
Confidence 99993 11 0 011112255555556666777
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHh
Q 003047 798 HHFVTQALSILPRSTEATLTAIYV--DLMLGKSQEALAKLKY 837 (854)
Q Consensus 798 ~~~~~~Al~~~P~~~~a~~l~~y~--~L~~G~~~eA~~~lk~ 837 (854)
...+.+-+...|+---...+.-|- ..-.|+..+-+-.+++
T Consensus 302 q~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~ 343 (389)
T COG2956 302 QAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRD 343 (389)
T ss_pred HHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHH
Confidence 777777778777652222222221 2234556666666665
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.02 E-value=2.1e-06 Score=108.02 Aligned_cols=296 Identities=13% Similarity=0.022 Sum_probs=198.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCH-----HHHHHHHHHHHHhcCHHHHHHHHHHhhhc----cCCCccH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSS-----LALFLKSQLEYARRNHRKAIKLLLALSNR----TEMGISS 393 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~-----~a~~lla~ly~~~g~~~kAl~~l~kal~~----~dp~~~a 393 (854)
+....+.++...|++++|...++.++... |... .+...+|.++...|++++|...+.+++.. ..+....
T Consensus 454 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~ 531 (903)
T PRK04841 454 FNALRAQVAINDGDPEEAERLAELALAEL--PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYAL 531 (903)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHH
Confidence 44456788899999999999999999865 5432 35577899999999999999999999863 1222234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc
Q 003047 394 MFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVF 473 (854)
Q Consensus 394 ~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~ 473 (854)
.++.++|.++...|++++|..++++++.......... .+.....+..+|.++...|++++|..++.+++.+.
T Consensus 532 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~--------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 603 (903)
T PRK04841 532 WSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQ--------LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL 603 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc--------ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence 5677899999999999999999999999844321000 01123445678999999999999999999999876
Q ss_pred CCCH-----HHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCC
Q 003047 474 YKQP-----LLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQ 548 (854)
Q Consensus 474 P~~~-----~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~ 548 (854)
.... ..+..+|.+.. ..
T Consensus 604 ~~~~~~~~~~~~~~la~~~~---~~------------------------------------------------------- 625 (903)
T PRK04841 604 SNYQPQQQLQCLAMLAKISL---AR------------------------------------------------------- 625 (903)
T ss_pred hccCchHHHHHHHHHHHHHH---Hc-------------------------------------------------------
Confidence 5321 11222222221 00
Q ss_pred CCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCccccc
Q 003047 549 PKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQK 628 (854)
Q Consensus 549 ~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~ 628 (854)
...+.|...++.++.+.+...... .
T Consensus 626 --G~~~~A~~~l~~a~~~~~~~~~~~------------------------------------------------~----- 650 (903)
T PRK04841 626 --GDLDNARRYLNRLENLLGNGRYHS------------------------------------------------D----- 650 (903)
T ss_pred --CCHHHHHHHHHHHHHHHhcccccH------------------------------------------------h-----
Confidence 124668899999887755421100 0
Q ss_pred CCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHHHHHhc
Q 003047 629 GGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLEL-PDCSRIYIFLGHIYAAEALCLL 707 (854)
Q Consensus 629 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~~-p~~~~~~~~la~lY~aeAl~~l 707 (854)
.. . .........+...|+...|.......... +..... ...-.+..+.++...
T Consensus 651 ------~~---------------~----~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 651 ------WI---------------A----NADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHF-LQGQWRNIARAQILL 704 (903)
T ss_pred ------Hh---------------h----HHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchh-HHHHHHHHHHHHHHc
Confidence 00 0 00000112345589999999998776652 111111 111123466788899
Q ss_pred CCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHH
Q 003047 708 NRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAM 787 (854)
Q Consensus 708 gr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~ 787 (854)
|++++|+.+|++++. .. +.. + .+ .-.+.++..+|.+
T Consensus 705 g~~~~A~~~l~~al~--~~---------------~~~----g--------------~~---------~~~a~~~~~la~a 740 (903)
T PRK04841 705 GQFDEAEIILEELNE--NA---------------RSL----R--------------LM---------SDLNRNLILLNQL 740 (903)
T ss_pred CCHHHHHHHHHHHHH--HH---------------HHh----C--------------ch---------HHHHHHHHHHHHH
Confidence 999999999999983 10 000 0 00 0146677789999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCC
Q 003047 788 FAMQGEFERAHHFVTQALSILPRS 811 (854)
Q Consensus 788 ~~~~g~~e~A~~~~~~Al~~~P~~ 811 (854)
+..+|+.++|..++++|+++....
T Consensus 741 ~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 741 YWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHhCcc
Confidence 999999999999999999987544
No 100
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.02 E-value=3.8e-09 Score=118.89 Aligned_cols=113 Identities=11% Similarity=0.044 Sum_probs=103.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccC
Q 003047 360 LFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQ 439 (854)
Q Consensus 360 ~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~ 439 (854)
+...|.-.+..|+|++|+++|.+++. .+|. .+.++.++|.+|..+|++++|+.++++++.+ .
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~-~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l----------------~ 66 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAID-LDPN-NAELYADRAQANIKLGNFTEAVADANKAIEL----------------D 66 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------C
Confidence 55678999999999999999999999 7885 6789999999999999999999999999998 3
Q ss_pred CccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 003047 440 DKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMA 490 (854)
Q Consensus 440 ~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~ 490 (854)
+....+++++|.+|+.+|+|++|+.+|++++.++|+++.++..++.|.-.+
T Consensus 67 P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 67 PSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999886644
No 101
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.93 E-value=1.5e-08 Score=110.58 Aligned_cols=134 Identities=23% Similarity=0.229 Sum_probs=113.0
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhc--CHHHHHHHHHHhhhccCCCccHHHHHHHHHHH
Q 003047 326 YKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARR--NHRKAIKLLLALSNRTEMGISSMFNNNLGCIY 403 (854)
Q Consensus 326 ~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g--~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy 403 (854)
...++|+.+++.+.|.++++.+-+.+ .|.+-..+..|.+.+..| ++++|+-+|+.... ..+ ..+..++.+++++
T Consensus 136 l~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~-~~~-~t~~~lng~A~~~ 211 (290)
T PF04733_consen 136 LAVQILLKMNRPDLAEKELKNMQQID--EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD-KFG-STPKLLNGLAVCH 211 (290)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHCCS--CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC-CS---SHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-ccC-CCHHHHHHHHHHH
Confidence 36789999999999999999999999 898888888888988877 59999999999776 444 3578899999999
Q ss_pred HHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHhcCCCHHH
Q 003047 404 YQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKP-VLAARCFQKSSLVFYKQPLL 479 (854)
Q Consensus 404 ~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~-eeAl~~y~kAL~l~P~~~~a 479 (854)
..+|+|++|...+++|+.. .+.++.++.|+..+...+|+. +.+.+++.+.-..+|++|.+
T Consensus 212 l~~~~~~eAe~~L~~al~~----------------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 212 LQLGHYEEAEELLEEALEK----------------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHCT-HHHHHHHHHHHCCC-----------------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HHhCCHHHHHHHHHHHHHh----------------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 9999999999999999876 345678999999999999998 56668888888899998865
No 102
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.92 E-value=7.9e-08 Score=117.16 Aligned_cols=223 Identities=9% Similarity=-0.070 Sum_probs=156.1
Q ss_pred chhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhccccc
Q 003047 142 EFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVN 221 (854)
Q Consensus 142 ~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~ 221 (854)
+|.+..+|..+..+|...+++++|+.+.+..++..+..-. .++.++.+|.+.+++++|.-+ +++.+....
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~-----~yy~~G~l~~q~~~~~~~~lv-----~~l~~~~~~ 96 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSIS-----ALYISGILSLSRRPLNDSNLL-----NLIDSFSQN 96 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCccee-----hHHHHHHHHHhhcchhhhhhh-----hhhhhcccc
Confidence 5778889999999999999999999999988886544333 477778899999999999743 333222000
Q ss_pred CCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCc
Q 003047 222 QVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLS 301 (854)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (854)
T Consensus 97 -------------------------------------------------------------------------------- 96 (906)
T PRK14720 97 -------------------------------------------------------------------------------- 96 (906)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 003047 302 SNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLL 381 (854)
Q Consensus 302 ~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~ 381 (854)
.++ .+.+.+-..+... |++..+++.+|.+|-.+|++++|+..|+
T Consensus 97 ---------------------------------~~~-~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~ye 140 (906)
T PRK14720 97 ---------------------------------LKW-AIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWE 140 (906)
T ss_pred ---------------------------------cch-hHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHH
Confidence 000 0111111122223 6677788888888888888888888888
Q ss_pred HhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhccc-------------CCc--cc---------cccc
Q 003047 382 ALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRK-------------DKP--LK---------LLTF 437 (854)
Q Consensus 382 kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~-------------~~~--l~---------~~~~ 437 (854)
++++ .+| .++.++||+|..|... +.++|+.++.||+...-+... .++ .. ....
T Consensus 141 r~L~-~D~-~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~ 217 (906)
T PRK14720 141 RLVK-ADR-DNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHR 217 (906)
T ss_pred HHHh-cCc-ccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhh
Confidence 8888 677 4677888888888777 888888888888776211000 000 00 0001
Q ss_pred cCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Q 003047 438 SQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEK 493 (854)
Q Consensus 438 ~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~ 493 (854)
....-...++-+-.+|-..+++++++..|+.+|+++|+|..+...|+.|+...+..
T Consensus 218 ~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~ 273 (906)
T PRK14720 218 EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKD 273 (906)
T ss_pred ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccC
Confidence 11223556677778999999999999999999999999999999999999965543
No 103
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.88 E-value=3.5e-08 Score=91.52 Aligned_cols=110 Identities=15% Similarity=0.072 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCcccc
Q 003047 357 SLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGI--SSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKL 434 (854)
Q Consensus 357 ~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~--~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~ 434 (854)
+..++.+|..++..|++++|++.|.+++. ..|+. .+.+++.+|.++.+.|++++|+.+|++++...++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------- 72 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLK-KYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS-------- 72 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC--------
Confidence 46789999999999999999999999998 45532 25678889999999999999999999999873211
Q ss_pred ccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHH
Q 003047 435 LTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLW 480 (854)
Q Consensus 435 ~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw 480 (854)
+..+.+++++|.++...|++++|+.+|++++..+|+++.+.
T Consensus 73 -----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 73 -----PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred -----CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 12357899999999999999999999999999999987653
No 104
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.83 E-value=3.4e-07 Score=95.80 Aligned_cols=131 Identities=12% Similarity=0.001 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHH
Q 003047 337 LKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFL 416 (854)
Q Consensus 337 ~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f 416 (854)
...+...+-...... |++.+. ...+..++..|+-+.++.+..++.. ..|. ...+++.+|....+.|++.+|+..|
T Consensus 49 ~~~a~~al~~~~~~~--p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~-~~~~-d~~ll~~~gk~~~~~g~~~~A~~~~ 123 (257)
T COG5010 49 TQGAAAALGAAVLRN--PEDLSI-AKLATALYLRGDADSSLAVLQKSAI-AYPK-DRELLAAQGKNQIRNGNFGEAVSVL 123 (257)
T ss_pred hhHHHHHHHHHHhcC--cchHHH-HHHHHHHHhcccccchHHHHhhhhc-cCcc-cHHHHHHHHHHHHHhcchHHHHHHH
Confidence 334666677777888 999999 9999999999999999999999777 5664 4667777999999999999999999
Q ss_pred HHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 417 SKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 417 ~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
+|+... .|++.++|.-+|.+|.+.|++++|...|.+++++.|+.|.+..|||..++
T Consensus 124 rkA~~l----------------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~ 179 (257)
T COG5010 124 RKAARL----------------APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLL 179 (257)
T ss_pred HHHhcc----------------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHH
Confidence 999998 46778999999999999999999999999999999999999999998877
No 105
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.82 E-value=1.6e-08 Score=85.66 Aligned_cols=67 Identities=27% Similarity=0.338 Sum_probs=62.7
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCC-CcHHHHHHHHHHH
Q 003047 392 SSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACG-KPVLAARCFQKSS 470 (854)
Q Consensus 392 ~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~G-k~eeAl~~y~kAL 470 (854)
++.+|+++|.++..+|++++|+.+|++++.. .+.++.+|+++|.+++.+| ++++|+.+|++++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~----------------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL----------------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH----------------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 4678999999999999999999999999998 3557899999999999999 7999999999999
Q ss_pred HhcC
Q 003047 471 LVFY 474 (854)
Q Consensus 471 ~l~P 474 (854)
+++|
T Consensus 66 ~l~P 69 (69)
T PF13414_consen 66 KLDP 69 (69)
T ss_dssp HHST
T ss_pred HcCc
Confidence 9998
No 106
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.81 E-value=6.9e-08 Score=97.28 Aligned_cols=106 Identities=15% Similarity=0.094 Sum_probs=92.0
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCC--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCc
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMG--ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKP 431 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~--~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~ 431 (854)
|....+++.+|..+...|++++|+.+|++++. ..|+ ....++.++|.+|..+|++++|+.+|++++..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------- 101 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALK-LEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--------- 101 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------
Confidence 56677889999999999999999999999997 3332 23568999999999999999999999999998
Q ss_pred cccccccCCccHHHHHHHHHHHHHCCC--------------cHHHHHHHHHHHHhcCCC
Q 003047 432 LKLLTFSQDKSLLITYNCGLQYLACGK--------------PVLAARCFQKSSLVFYKQ 476 (854)
Q Consensus 432 l~~~~~~~~~~~~~~~nLG~~ll~~Gk--------------~eeAl~~y~kAL~l~P~~ 476 (854)
.+.....++++|.++...|+ +++|++++++++.++|++
T Consensus 102 -------~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 102 -------NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred -------CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 23456788899999999988 688999999999999997
No 107
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.81 E-value=1.4e-06 Score=90.66 Aligned_cols=147 Identities=17% Similarity=0.078 Sum_probs=126.4
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHH
Q 003047 326 YKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ 405 (854)
Q Consensus 326 ~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~ 405 (854)
.|+..+-..++.++|++-++++++-+ |.|...+--+--+...+|+..+||+.+..-++ ..+. ...+|.-++.+|..
T Consensus 91 lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~-~F~~-D~EAW~eLaeiY~~ 166 (289)
T KOG3060|consen 91 LKAMLLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD-KFMN-DQEAWHELAEIYLS 166 (289)
T ss_pred HHHHHHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH-HhcC-cHHHHHHHHHHHHh
Confidence 46778888899999999999999999 99999988888888899999999999999998 6774 47889999999999
Q ss_pred cCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHhcCCCHHHHHH
Q 003047 406 LAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGK---PVLAARCFQKSSLVFYKQPLLWLR 482 (854)
Q Consensus 406 ~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk---~eeAl~~y~kAL~l~P~~~~aw~~ 482 (854)
.|+|.+|..||++.+-+ +|-.+..+-.+|.+++-+|. ++-|.++|.+++++.|.+.++|+-
T Consensus 167 ~~~f~kA~fClEE~ll~----------------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~G 230 (289)
T KOG3060|consen 167 EGDFEKAAFCLEELLLI----------------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFG 230 (289)
T ss_pred HhHHHHHHHHHHHHHHc----------------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHH
Confidence 99999999999999887 34455566677888777765 677999999999999999999999
Q ss_pred HHHHHHHHHh
Q 003047 483 LAECCLMALE 492 (854)
Q Consensus 483 La~~~i~~~~ 492 (854)
+-.||..+-.
T Consensus 231 I~lc~~~la~ 240 (289)
T KOG3060|consen 231 IYLCGSALAQ 240 (289)
T ss_pred HHHHHHHHHH
Confidence 9999886554
No 108
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=1.4e-06 Score=93.86 Aligned_cols=347 Identities=18% Similarity=0.155 Sum_probs=184.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHH-HHHHHhhhcccCCC
Q 003047 31 AKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALN--NVKNK-SEELARATGEQTEG 107 (854)
Q Consensus 31 ~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~--~~~~~-~~~~~~~~~~~~~~ 107 (854)
.--|..+|..|+|++|+..|.-+-+.+.-+++++-||+.++||.+.|-.++....... -+... +--+++.-..+..
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~- 139 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKR- 139 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHH-
Confidence 3468999999999999999999999777789999999999999987554333210000 00000 0000000000000
Q ss_pred CCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHH
Q 003047 108 GGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQI 187 (854)
Q Consensus 108 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~ 187 (854)
. -++ ..++. |...-...+|.+.|..-.|.+||++|.+++.. ..++.+..|
T Consensus 140 ---------~---------~~f-------h~~Lq--D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d---n~ey~alNV 189 (557)
T KOG3785|consen 140 ---------I---------LTF-------HSSLQ--DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD---NPEYIALNV 189 (557)
T ss_pred ---------H---------HHH-------HHHHh--hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc---ChhhhhhHH
Confidence 0 000 00111 12234557788999999999999999999884 334555433
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhh
Q 003047 188 CLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENAL 267 (854)
Q Consensus 188 ~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (854)
.++-.|....=|+-+.++|+-|-+.++-+ ..+ .|-..-++
T Consensus 190 --y~ALCyyKlDYydvsqevl~vYL~q~pdS------------------------------------tiA--~NLkacn~ 229 (557)
T KOG3785|consen 190 --YMALCYYKLDYYDVSQEVLKVYLRQFPDS------------------------------------TIA--KNLKACNL 229 (557)
T ss_pred --HHHHHHHhcchhhhHHHHHHHHHHhCCCc------------------------------------HHH--HHHHHHHH
Confidence 34567888888898988888776655322 000 00000011
Q ss_pred hhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 003047 268 SRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLA 347 (854)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~a 347 (854)
.+.+...+.+.+... +. .+. ..+|.+.-.+.|-.+-+. ++-+.|++-+-.+
T Consensus 230 fRl~ngr~ae~E~k~----la---------------------dN~---~~~~~f~~~l~rHNLVvF-rngEgALqVLP~L 280 (557)
T KOG3785|consen 230 FRLINGRTAEDEKKE----LA---------------------DNI---DQEYPFIEYLCRHNLVVF-RNGEGALQVLPSL 280 (557)
T ss_pred hhhhccchhHHHHHH----HH---------------------hcc---cccchhHHHHHHcCeEEE-eCCccHHHhchHH
Confidence 111222222222221 00 000 011222111111111111 1223344444444
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcc
Q 003047 348 MNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLR 427 (854)
Q Consensus 348 l~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~ 427 (854)
++.- |++.+++...|..+++.++|+.+.+. .+|. .+.-|.-.|.++...|+-.-..+.++-|-+.+.-++
T Consensus 281 ~~~I-----PEARlNL~iYyL~q~dVqeA~~L~Kd----l~Pt-tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG 350 (557)
T KOG3785|consen 281 MKHI-----PEARLNLIIYYLNQNDVQEAISLCKD----LDPT-TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVG 350 (557)
T ss_pred HhhC-----hHhhhhheeeecccccHHHHHHHHhh----cCCC-ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhc
Confidence 4433 45667777777777777777776555 3442 233344467777777665444444444333211000
Q ss_pred cC----Ccc----------------c--------cc-cccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc-CCCH
Q 003047 428 KD----KPL----------------K--------LL-TFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVF-YKQP 477 (854)
Q Consensus 428 ~~----~~l----------------~--------~~-~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~-P~~~ 477 (854)
.. +.+ + +. -+.+ +....+|++-++...|.|.+|.+.|.++-.-. .+..
T Consensus 351 ~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N--dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~ 428 (557)
T KOG3785|consen 351 ESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN--DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKI 428 (557)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhH
Confidence 00 000 0 00 0111 23456799999999999999999999877666 4455
Q ss_pred HHHHHHHHHHHH
Q 003047 478 LLWLRLAECCLM 489 (854)
Q Consensus 478 ~aw~~La~~~i~ 489 (854)
.....||.|+|+
T Consensus 429 ~Y~s~LArCyi~ 440 (557)
T KOG3785|consen 429 LYKSMLARCYIR 440 (557)
T ss_pred HHHHHHHHHHHh
Confidence 567788999993
No 109
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.77 E-value=7.1e-08 Score=82.85 Aligned_cols=99 Identities=24% Similarity=0.244 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCcccccccc
Q 003047 359 ALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFS 438 (854)
Q Consensus 359 a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~ 438 (854)
.++.+|..++..|++++|++++++++. ..|. ...++..+|.+|...|++++|+.+|++++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------------- 64 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALE-LDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD--------------- 64 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHh-cCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---------------
Confidence 467778888888888888888888887 5663 35677778888888888888888888888762
Q ss_pred CCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCC
Q 003047 439 QDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYK 475 (854)
Q Consensus 439 ~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~ 475 (854)
+....+++.+|.++...|++++|..+|.+++.+.|+
T Consensus 65 -~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 65 -PDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred -CcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 233467778888888888888888888888877764
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.76 E-value=2.8e-07 Score=107.20 Aligned_cols=135 Identities=14% Similarity=0.112 Sum_probs=119.8
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHc
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQL 406 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~ 406 (854)
+..+|...|+.++|.+-+.+.++ . |+++..|..+|++.....=|++|.++.+..-. .+...+|....+.
T Consensus 430 vi~CY~~lg~~~kaeei~~q~le-k--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sa--------rA~r~~~~~~~~~ 498 (777)
T KOG1128|consen 430 VILCYLLLGQHGKAEEINRQELE-K--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISA--------RAQRSLALLILSN 498 (777)
T ss_pred HHHHHHHhcccchHHHHHHHHhc-C--CCcchhHHHhhhhccChHHHHHHHHHhhhhhH--------HHHHhhccccccc
Confidence 46689999999999988888888 6 88899999999999999999999998776543 3445577877789
Q ss_pred CCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 003047 407 AKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAEC 486 (854)
Q Consensus 407 g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~ 486 (854)
++|+++...|+.+|.+ ++-....||++|-+.++++++..|..+|..++.++|++..+|.+++-.
T Consensus 499 ~~fs~~~~hle~sl~~----------------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~a 562 (777)
T KOG1128|consen 499 KDFSEADKHLERSLEI----------------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTA 562 (777)
T ss_pred hhHHHHHHHHHHHhhc----------------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHH
Confidence 9999999999999998 445678999999999999999999999999999999999999999999
Q ss_pred HH
Q 003047 487 CL 488 (854)
Q Consensus 487 ~i 488 (854)
++
T Consensus 563 yi 564 (777)
T KOG1128|consen 563 YI 564 (777)
T ss_pred HH
Confidence 98
No 111
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.76 E-value=1.3e-07 Score=90.62 Aligned_cols=97 Identities=9% Similarity=-0.096 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
..+..+..++..|++++|.+.++.++..+ |+++.+++.+|.+++..|++++|+++|++++. .+|. .+.+++++|.+
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~p~-~~~~~~~la~~ 94 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAA-LDPD-DPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCC-ChHHHHHHHHH
Confidence 34567888999999999999999999999 99999999999999999999999999999999 6784 57888999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhc
Q 003047 403 YYQLAKYHTSSVFLSKALSNS 423 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~ 423 (854)
|..+|++++|+.+|+++++..
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHhc
Confidence 999999999999999999984
No 112
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=9.7e-07 Score=95.00 Aligned_cols=359 Identities=13% Similarity=0.075 Sum_probs=196.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc--------------cC
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNR--------------TE 388 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~--------------~d 388 (854)
+.++-+-+|...|++++|..+++.+++.+ --+.+..+.+|-.++-.|.|.+|..+-.++.+. .+
T Consensus 59 ~~lWia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 59 LQLWIAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCc
Confidence 44455667777888888888888888877 666677778888888888888887776665441 00
Q ss_pred CC----------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCC
Q 003047 389 MG----------ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGK 458 (854)
Q Consensus 389 p~----------~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk 458 (854)
.. +...-...|+.+++..-.|.+||..|+++|...+.+ ..+--+++.||.++.-
T Consensus 137 Ek~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey----------------~alNVy~ALCyyKlDY 200 (557)
T KOG3785|consen 137 EKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY----------------IALNVYMALCYYKLDY 200 (557)
T ss_pred HHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh----------------hhhHHHHHHHHHhcch
Confidence 00 011122345556655566777777777776652211 1122356777777777
Q ss_pred cHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCC
Q 003047 459 PVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEK 538 (854)
Q Consensus 459 ~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g 538 (854)
|+-+.+.+.-.|...|+++-+..-++-....+...+..++ + -+ .+
T Consensus 201 ydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~--------E----------~k-----------~l------ 245 (557)
T KOG3785|consen 201 YDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAED--------E----------KK-----------EL------ 245 (557)
T ss_pred hhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHH--------H----------HH-----------HH------
Confidence 7777777777777777777665555433332222110000 0 00 01
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCccccccccccccccccccccccccccccccccccc
Q 003047 539 DDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQV 618 (854)
Q Consensus 539 ~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (854)
+.....+++|+..-+|.-|.+...-+.+
T Consensus 246 -------adN~~~~~~f~~~l~rHNLVvFrngEgA--------------------------------------------- 273 (557)
T KOG3785|consen 246 -------ADNIDQEYPFIEYLCRHNLVVFRNGEGA--------------------------------------------- 273 (557)
T ss_pred -------HhcccccchhHHHHHHcCeEEEeCCccH---------------------------------------------
Confidence 1111123556655555333333322210
Q ss_pred ccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChHHHHHHHHH
Q 003047 619 TANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHI 698 (854)
Q Consensus 619 ~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~~p~~~~~~~~la~l 698 (854)
.+ .+|+-..+.+ -+..+|..-|+..+|-.+|+...+.+ .|..|-.|..-|.+
T Consensus 274 -----------------Lq-VLP~L~~~IP--------EARlNL~iYyL~q~dVqeA~~L~Kdl--~PttP~EyilKgvv 325 (557)
T KOG3785|consen 274 -----------------LQ-VLPSLMKHIP--------EARLNLIIYYLNQNDVQEAISLCKDL--DPTTPYEYILKGVV 325 (557)
T ss_pred -----------------HH-hchHHHhhCh--------HhhhhheeeecccccHHHHHHHHhhc--CCCChHHHHHHHHH
Confidence 00 1222222222 23456677799999999999888765 45555566555554
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhhcC-CCCCCCCCCchhhhhhhHhhhh--------hhhhc----cCCCCCCCCCCCCCC
Q 003047 699 YAAEALCLLNRPKEAAEHFSMYLSG-GDNFDLPFSGEDCEQWRVEKII--------DCEEL----NGGPAAAKNPSPEDS 765 (854)
Q Consensus 699 Y~aeAl~~lgr~~eAl~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~--------d~~~~----~~~~~~~~~~~~~~p 765 (854)
.+ .+|+-....+|+.-+-.- .. ++-|..+++..-|+... -|+++ +.+.
T Consensus 326 ~a-----alGQe~gSreHlKiAqqffql---VG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~----------- 386 (557)
T KOG3785|consen 326 FA-----ALGQETGSREHLKIAQQFFQL---VGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIE----------- 386 (557)
T ss_pred HH-----HhhhhcCcHHHHHHHHHHHHH---hcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 44 356665555565443200 00 01111111111111100 01110 0000
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 003047 766 RDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSIL-PRSTEATLTAIYVDLMLGKSQEALAKLKYCN 839 (854)
Q Consensus 766 ~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~-P~~~~a~~l~~y~~L~~G~~~eA~~~lk~~~ 839 (854)
. +..+ .-...+|+|.+.+.-|+|.+|++.|-++-... -+.......++-++++.|+.+-||.++-+..
T Consensus 387 s--YF~N----dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~ 455 (557)
T KOG3785|consen 387 S--YFTN----DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN 455 (557)
T ss_pred H--HhcC----cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC
Confidence 0 0000 23556899999999999999999998875543 2344456677888889999999999987633
No 113
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=6.6e-08 Score=102.81 Aligned_cols=124 Identities=16% Similarity=0.114 Sum_probs=105.4
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcC
Q 003047 328 VRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLA 407 (854)
Q Consensus 328 ~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g 407 (854)
+.=....+++.+|+..+..+|+++ |+|+-+|-++|.+|.++|+|+.|++-+++++. .||+ ...+|-.||.+|..+|
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~-iDp~-yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS-IDPH-YSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh-cChH-HHHHHHHHHHHHHccC
Confidence 444567789999999999999999 99999999999999999999999999999999 8995 5789999999999999
Q ss_pred CHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcH---HHHHHHHHHHH
Q 003047 408 KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPV---LAARCFQKSSL 471 (854)
Q Consensus 408 ~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~e---eAl~~y~kAL~ 471 (854)
++.+|+..|+|||.+. |.+...+-||..+-..++... .+...++-+..
T Consensus 164 k~~~A~~aykKaLeld----------------P~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ 214 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELD----------------PDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGL 214 (304)
T ss_pred cHHHHHHHHHhhhccC----------------CCcHHHHHHHHHHHHHhcCCCcccccccchhhhhh
Confidence 9999999999999993 445567778888877777766 34444444333
No 114
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.74 E-value=1.9e-07 Score=91.39 Aligned_cols=120 Identities=18% Similarity=0.119 Sum_probs=100.8
Q ss_pred HHHhcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCC--CccHHHHHHHHHHHHH
Q 003047 331 LLLTRNLKHAKREVKLAMNIARGKDS---SLALFLKSQLEYARRNHRKAIKLLLALSNRTEM--GISSMFNNNLGCIYYQ 405 (854)
Q Consensus 331 yl~~~~~~~A~~elk~al~~~~~P~~---~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp--~~~a~~~nnLG~iy~~ 405 (854)
.+..++...+.+.++.++..+ |+. ..+.+.+|.+++..|++++|++.|+.++. ..| .....+...|+.++..
T Consensus 21 ~~~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~-~~~d~~l~~~a~l~LA~~~~~ 97 (145)
T PF09976_consen 21 ALQAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALA-NAPDPELKPLARLRLARILLQ 97 (145)
T ss_pred HHHCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-hCCCHHHHHHHHHHHHHHHHH
Confidence 336889999988899999999 999 66778999999999999999999999998 333 2335678889999999
Q ss_pred cCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Q 003047 406 LAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSS 470 (854)
Q Consensus 406 ~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL 470 (854)
.|++++|+..+++.-. .+..+.++.-+|.+|+..|++++|+..|++||
T Consensus 98 ~~~~d~Al~~L~~~~~-----------------~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 98 QGQYDEALATLQQIPD-----------------EAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred cCCHHHHHHHHHhccC-----------------cchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9999999999966211 12345677789999999999999999999985
No 115
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.73 E-value=1.3e-07 Score=94.79 Aligned_cols=123 Identities=11% Similarity=0.038 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCC--ccHHHHHHHHHHHHHcCCHHHHHHH
Q 003047 338 KHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMG--ISSMFNNNLGCIYYQLAKYHTSSVF 415 (854)
Q Consensus 338 ~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~--~~a~~~nnLG~iy~~~g~~~eAi~~ 415 (854)
..+...+.+.++.........+++.+|.++..+|++++|+..|.+++. ..|+ ..+.+++++|.+|..+|++++|+.+
T Consensus 16 ~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~-l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 16 TIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMR-LEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred ccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-ccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334444444444441123356779999999999999999999999987 3332 2356899999999999999999999
Q ss_pred HHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHH-------HCCCcH-------HHHHHHHHHHHhcCCCH
Q 003047 416 LSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYL-------ACGKPV-------LAARCFQKSSLVFYKQP 477 (854)
Q Consensus 416 f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll-------~~Gk~e-------eAl~~y~kAL~l~P~~~ 477 (854)
|++++.+. +.....++++|.++. ..|+++ +|+.+|++++..+|++.
T Consensus 95 ~~~Al~~~----------------~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 95 YFQALERN----------------PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHhC----------------cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 99999982 233466777777777 777876 66667777888888653
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.73 E-value=3.7e-07 Score=95.57 Aligned_cols=145 Identities=15% Similarity=0.048 Sum_probs=132.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHH
Q 003047 325 LYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYY 404 (854)
Q Consensus 325 l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~ 404 (854)
...+..|...|+-+.+..-..++...+ |.+...+..+|...+..|+|.+|+..+.++.. ..|+ +..+|+.+|.+|-
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~--~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~-l~p~-d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY--PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR-LAPT-DWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC--cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc-cCCC-ChhhhhHHHHHHH
Confidence 556778888899999999999988888 99999998899999999999999999999999 7885 5789999999999
Q ss_pred HcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHH
Q 003047 405 QLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLA 484 (854)
Q Consensus 405 ~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La 484 (854)
+.|+.++|-.-|.|++++. +..+.++.|+|..|+..|+++.|...+.++...-+.+..+..+|+
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~----------------~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLA 209 (257)
T COG5010 146 QLGRFDEARRAYRQALELA----------------PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLA 209 (257)
T ss_pred HccChhHHHHHHHHHHHhc----------------cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 9999999999999999993 345678999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 003047 485 ECCLM 489 (854)
Q Consensus 485 ~~~i~ 489 (854)
.+...
T Consensus 210 l~~~~ 214 (257)
T COG5010 210 LVVGL 214 (257)
T ss_pred HHHhh
Confidence 88773
No 117
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.72 E-value=4.6e-07 Score=98.78 Aligned_cols=214 Identities=14% Similarity=0.045 Sum_probs=138.6
Q ss_pred chhhHHHHHHH-HHHHHHhhcHHHHHHHHHHhhhccCCCchhh-HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhccc
Q 003047 142 EFDVSVAKLNI-AVIWFHLHEYAKALSVLEPLYQNIEPIDETT-ALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGC 219 (854)
Q Consensus 142 ~~~~~~~~~n~-a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~-~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~ 219 (854)
+.+.+..+|+. |..|...|+|++|.+.|+++........+.. +...+...+.+|... ++++|+ .+|+++..+.
T Consensus 30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai---~~~~~A~~~y- 104 (282)
T PF14938_consen 30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAI---ECYEKAIEIY- 104 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHH---HHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHH---HHHHHHHHHH-
Confidence 67787788887 7889999999999999999988766666654 333444455666555 777776 4556655332
Q ss_pred ccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCC
Q 003047 220 VNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVG 299 (854)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (854)
T Consensus 105 -------------------------------------------------------------------------------- 104 (282)
T PF14938_consen 105 -------------------------------------------------------------------------------- 104 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHh-cCHHHHHH
Q 003047 300 LSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYAR-RNHRKAIK 378 (854)
Q Consensus 300 ~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~-g~~~kAl~ 378 (854)
...|++..|-+ .+..+|.+|... |++++|++
T Consensus 105 --------------------------------~~~G~~~~aA~----------------~~~~lA~~ye~~~~d~e~Ai~ 136 (282)
T PF14938_consen 105 --------------------------------REAGRFSQAAK----------------CLKELAEIYEEQLGDYEKAIE 136 (282)
T ss_dssp --------------------------------HHCT-HHHHHH----------------HHHHHHHHHCCTT--HHHHHH
T ss_pred --------------------------------HhcCcHHHHHH----------------HHHHHHHHHHHHcCCHHHHHH
Confidence 23344443332 334455666666 78888888
Q ss_pred HHHHhhhc----cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHH
Q 003047 379 LLLALSNR----TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYL 454 (854)
Q Consensus 379 ~l~kal~~----~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll 454 (854)
+|++++.. ..+.....++.++|.++.++|+|++|++.|+++.....+.... ...--..++..++|++
T Consensus 137 ~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~---------~~~~~~~~l~a~l~~L 207 (282)
T PF14938_consen 137 YYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL---------KYSAKEYFLKAILCHL 207 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT---------GHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc---------chhHHHHHHHHHHHHH
Confidence 88888773 2232345677789999999999999999999998863211000 0111246678999999
Q ss_pred HCCCcHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHhccccC
Q 003047 455 ACGKPVLAARCFQKSSLVFYKQPLL-WLRLAECCLMALEKGLVA 497 (854)
Q Consensus 455 ~~Gk~eeAl~~y~kAL~l~P~~~~a-w~~La~~~i~~~~~~~~e 497 (854)
..|++..|..+|++...++|..... =..+..-++...+.+..+
T Consensus 208 ~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e 251 (282)
T PF14938_consen 208 AMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVE 251 (282)
T ss_dssp HTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CC
T ss_pred HcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHH
Confidence 9999999999999999999976432 123344444444554333
No 118
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.70 E-value=3.9e-07 Score=102.35 Aligned_cols=121 Identities=22% Similarity=0.186 Sum_probs=110.7
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccc
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLK 433 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~ 433 (854)
|.-..+++-.+..++..|.+++|++.+...++ ..| +++.++-..|.++...++..+|++.|++++...
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~-~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~---------- 370 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIA-AQP-DNPYYLELAGDILLEANKAKEAIERLKKALALD---------- 370 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHH-hCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----------
Confidence 77889999999999999999999999999999 789 478788888999999999999999999999983
Q ss_pred cccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 003047 434 LLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALE 492 (854)
Q Consensus 434 ~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~ 492 (854)
|...-.++|+|.+|+..|++.+|+..++..+.-+|++|..|..||+.|-..+.
T Consensus 371 ------P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 371 ------PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred ------CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc
Confidence 33467889999999999999999999999999999999999999999985333
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.68 E-value=6.2e-07 Score=104.38 Aligned_cols=146 Identities=17% Similarity=0.101 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
.+++.+......+++.++.+.++..++++ |-....||..|-+..+.++++.|.+.|...+. .+|+ +..+|||+.+.
T Consensus 487 A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~av~aF~rcvt-L~Pd-~~eaWnNls~a 562 (777)
T KOG1128|consen 487 AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT-LEPD-NAEAWNNLSTA 562 (777)
T ss_pred HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHHHHHHHHHhh-cCCC-chhhhhhhhHH
Confidence 44555666667899999999999999999 99999999999999999999999999999999 8994 78999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCC--CHHHH
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYK--QPLLW 480 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~--~~~aw 480 (854)
|.++|+-.+|-..+++|++. +..+...|.|--.+....|.+++|++.|.+.+.+..+ ++.+.
T Consensus 563 yi~~~~k~ra~~~l~EAlKc----------------n~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl 626 (777)
T KOG1128|consen 563 YIRLKKKKRAFRKLKEALKC----------------NYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVL 626 (777)
T ss_pred HHHHhhhHHHHHHHHHHhhc----------------CCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhh
Confidence 99999999999999999997 2235678888899999999999999999998876643 35556
Q ss_pred HHHHHHHH
Q 003047 481 LRLAECCL 488 (854)
Q Consensus 481 ~~La~~~i 488 (854)
..+....+
T Consensus 627 ~~iv~~~~ 634 (777)
T KOG1128|consen 627 LIIVRTVL 634 (777)
T ss_pred HHHHHHHH
Confidence 66665554
No 120
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.68 E-value=2.7e-07 Score=104.01 Aligned_cols=110 Identities=13% Similarity=0.005 Sum_probs=97.1
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHc
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQL 406 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~ 406 (854)
++..++..+++++|++.+++++.++ |+++.+++.+|.+++..|++++|+..+++++. .+|. .+.+|+++|.+|..+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~-l~P~-~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIE-LDPS-LAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcC-CHHHHHHHHHHHHHh
Confidence 5777788999999999999999999 99999999999999999999999999999999 7884 688999999999999
Q ss_pred CCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHC
Q 003047 407 AKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLAC 456 (854)
Q Consensus 407 g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~ 456 (854)
|+|++|+.+|++++.+. +.+..+...++.|...+
T Consensus 84 g~~~eA~~~~~~al~l~----------------P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 84 EEYQTAKAALEKGASLA----------------PGDSRFTKLIKECDEKI 117 (356)
T ss_pred CCHHHHHHHHHHHHHhC----------------CCCHHHHHHHHHHHHHH
Confidence 99999999999999983 33455565566665444
No 121
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.67 E-value=2.1e-07 Score=91.44 Aligned_cols=92 Identities=12% Similarity=-0.030 Sum_probs=85.3
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcC
Q 003047 328 VRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLA 407 (854)
Q Consensus 328 ~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g 407 (854)
+-.+...|++++|.+-++.++.++ |.+..+|+.+|.++..+|+|.+|+..|.+++. .+|+ .+..+.++|.+|+..|
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~-L~~d-dp~~~~~ag~c~L~lG 117 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ-IKID-APQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cCCC-CchHHHHHHHHHHHcC
Confidence 344557899999999999999999 99999999999999999999999999999999 7885 5678888999999999
Q ss_pred CHHHHHHHHHHHHHhc
Q 003047 408 KYHTSSVFLSKALSNS 423 (854)
Q Consensus 408 ~~~eAi~~f~kAL~~~ 423 (854)
+.+.|.+.|+.|+...
T Consensus 118 ~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 118 NVCYAIKALKAVVRIC 133 (157)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999999984
No 122
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.65 E-value=4.2e-05 Score=89.75 Aligned_cols=96 Identities=14% Similarity=0.047 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHH
Q 003047 322 KLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGC 401 (854)
Q Consensus 322 ~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~ 401 (854)
.+.+|+..++...|++++|++.++.....- +|...++-.+|.+++..|++++|.+.|...+. .+|+ +..+|..+..
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I--~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~-rNPd-n~~Yy~~L~~ 80 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQI--LDKLAVLEKRAELLLKLGRKEEAEKIYRELID-RNPD-NYDYYRGLEE 80 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCC-cHHHHHHHHH
Confidence 367899999999999999999999888888 89999999999999999999999999999999 7884 5677777766
Q ss_pred HHHHcC-----CHHHHHHHHHHHHH
Q 003047 402 IYYQLA-----KYHTSSVFLSKALS 421 (854)
Q Consensus 402 iy~~~g-----~~~eAi~~f~kAL~ 421 (854)
+..-.. ..+.-...|++.-.
T Consensus 81 ~~g~~~~~~~~~~~~~~~~y~~l~~ 105 (517)
T PF12569_consen 81 ALGLQLQLSDEDVEKLLELYDELAE 105 (517)
T ss_pred HHhhhcccccccHHHHHHHHHHHHH
Confidence 663332 33444555554333
No 123
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.65 E-value=9.3e-08 Score=80.87 Aligned_cols=67 Identities=19% Similarity=0.245 Sum_probs=61.9
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhc
Q 003047 355 DSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLA-KYHTSSVFLSKALSNS 423 (854)
Q Consensus 355 ~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g-~~~eAi~~f~kAL~~~ 423 (854)
+++..++.+|..++..|+|++|+.+|.+++. .+|. .+.+++++|.+|..+| ++.+|+.+|++++++.
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~-~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIE-LDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHH-HSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 3678899999999999999999999999999 7895 6889999999999999 7999999999999973
No 124
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.62 E-value=8.8e-08 Score=84.66 Aligned_cols=82 Identities=27% Similarity=0.261 Sum_probs=50.4
Q ss_pred hcCHHHHHHHHHHhhhccCCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHH
Q 003047 370 RRNHRKAIKLLLALSNRTEMGI-SSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYN 448 (854)
Q Consensus 370 ~g~~~kAl~~l~kal~~~dp~~-~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~n 448 (854)
+|+|++|+.++++++. .+|.+ ...+++++|.+|+++|+|++|+.++++ +.. .+......+.
T Consensus 2 ~~~y~~Ai~~~~k~~~-~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~----------------~~~~~~~~~l 63 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLE-LDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL----------------DPSNPDIHYL 63 (84)
T ss_dssp TT-HHHHHHHHHHHHH-HHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH----------------HHCHHHHHHH
T ss_pred CccHHHHHHHHHHHHH-HCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC----------------CCCCHHHHHH
Confidence 4677777777777776 44421 344555677777777777777777777 433 1223455556
Q ss_pred HHHHHHHCCCcHHHHHHHHHH
Q 003047 449 CGLQYLACGKPVLAARCFQKS 469 (854)
Q Consensus 449 LG~~ll~~Gk~eeAl~~y~kA 469 (854)
+|.|++.+|++++|+.+|+++
T Consensus 64 ~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 64 LARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHhcC
Confidence 677777777777777777664
No 125
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.62 E-value=7.9e-05 Score=82.20 Aligned_cols=303 Identities=15% Similarity=0.048 Sum_probs=199.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccC
Q 003047 26 VTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQT 105 (854)
Q Consensus 26 ~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 105 (854)
.+..-..+|+.-+..|+|.+|.++..+.-+-. ..|.+.+-+| ++..... .++..+=..+.++.+ .+
T Consensus 83 ra~~~~~egl~~l~eG~~~qAEkl~~rnae~~-e~p~l~~l~a-A~AA~qr----gd~~~an~yL~eaae--------~~ 148 (400)
T COG3071 83 RARKALNEGLLKLFEGDFQQAEKLLRRNAEHG-EQPVLAYLLA-AEAAQQR----GDEDRANRYLAEAAE--------LA 148 (400)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcC-cchHHHHHHH-HHHHHhc----ccHHHHHHHHHHHhc--------cC
Confidence 45666789999999999999999999855433 3344444333 2221111 122222233333331 11
Q ss_pred CCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHH
Q 003047 106 EGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTAL 185 (854)
Q Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~ 185 (854)
. |+ +--.....+.++...|+|+.|.+-..++...-+-..+
T Consensus 149 ~-----------------------------------~~-~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~---- 188 (400)
T COG3071 149 G-----------------------------------DD-TLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPE---- 188 (400)
T ss_pred C-----------------------------------Cc-hHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChH----
Confidence 1 12 2224446799999999999999999999994433333
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhh----hhhh
Q 003047 186 QICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLA----ATVN 261 (854)
Q Consensus 186 ~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 261 (854)
+.-+....|+..|++...+.++..++|+--+..+ |.. -.+.
T Consensus 189 -vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~----------------------------------e~~~le~~a~~ 233 (400)
T COG3071 189 -VLRLALRAYIRLGAWQALLAILPKLRKAGLLSDE----------------------------------EAARLEQQAWE 233 (400)
T ss_pred -HHHHHHHHHHHhccHHHHHHHHHHHHHccCCChH----------------------------------HHHHHHHHHHH
Confidence 5666779999999999999999999987655411 110 0111
Q ss_pred hhhhhhhhhhh-hhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHH
Q 003047 262 ASENALSRTLS-EETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHA 340 (854)
Q Consensus 262 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A 340 (854)
+++......-+ +....+ .+++ +........|.+.-+.=++..|+.++|
T Consensus 234 glL~q~~~~~~~~gL~~~-----------------------W~~~--------pr~lr~~p~l~~~~a~~li~l~~~~~A 282 (400)
T COG3071 234 GLLQQARDDNGSEGLKTW-----------------------WKNQ--------PRKLRNDPELVVAYAERLIRLGDHDEA 282 (400)
T ss_pred HHHHHHhccccchHHHHH-----------------------HHhc--------cHHhhcChhHHHHHHHHHHHcCChHHH
Confidence 11111000000 000000 0011 111222235666667788999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHH-HHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003047 341 KREVKLAMNIARGKDSSLALFLKSQL-EYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKA 419 (854)
Q Consensus 341 ~~elk~al~~~~~P~~~~a~~lla~l-y~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kA 419 (854)
.+-++..++.. =|.. +...+ ...-+++.+=++..++.++ ..|+ .+..+.-||..|++.+.+.+|..+|+.|
T Consensus 283 ~~~i~~~Lk~~--~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~-~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaA 354 (400)
T COG3071 283 QEIIEDALKRQ--WDPR----LCRLIPRLRPGDPEPLIKAAEKWLK-QHPE-DPLLLSTLGRLALKNKLWGKASEALEAA 354 (400)
T ss_pred HHHHHHHHHhc--cChh----HHHHHhhcCCCCchHHHHHHHHHHH-hCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999987 3333 11122 3366888888888899998 6774 5688888999999999999999999999
Q ss_pred HHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc
Q 003047 420 LSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVF 473 (854)
Q Consensus 420 L~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~ 473 (854)
+.. -+....+.-+|.++.++|++++|-+++++++.+.
T Consensus 355 l~~-----------------~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 355 LKL-----------------RPSASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred Hhc-----------------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 997 2345677788999999999999999999998554
No 126
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.61 E-value=3.9e-05 Score=90.06 Aligned_cols=321 Identities=14% Similarity=0.102 Sum_probs=198.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCC
Q 003047 27 TATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTE 106 (854)
Q Consensus 27 ~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 106 (854)
++-++.++....+.|+|++|+++|++....-.+...++...|.+++..+. +.++..-.+.-+.
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~------~~eA~~~y~~Li~----------- 66 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGR------KEEAEKIYRELID----------- 66 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHH-----------
Confidence 45678889999999999999999998888777778888888877665543 2233333333331
Q ss_pred CCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhh-----cHHHHHHHHHHhhhccCCCch
Q 003047 107 GGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLH-----EYAKALSVLEPLYQNIEPIDE 181 (854)
Q Consensus 107 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~-----~y~~A~~~~e~l~~~~~~~~e 181 (854)
.+|+|..++..+..+..... +-++-.++|+++....+. .+
T Consensus 67 ----------------------------------rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~-s~ 111 (517)
T PF12569_consen 67 ----------------------------------RNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPR-SD 111 (517)
T ss_pred ----------------------------------HCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCcc-cc
Confidence 15778778877777763333 456667888777665532 22
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhh
Q 003047 182 TTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVN 261 (854)
Q Consensus 182 ~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (854)
. ...+.+... ...++...+. .|+...+.-+ ||| .+
T Consensus 112 ~-~~rl~L~~~----~g~~F~~~~~--~yl~~~l~Kg-----------------------vPs---------------lF 146 (517)
T PF12569_consen 112 A-PRRLPLDFL----EGDEFKERLD--EYLRPQLRKG-----------------------VPS---------------LF 146 (517)
T ss_pred c-hhHhhcccC----CHHHHHHHHH--HHHHHHHhcC-----------------------Cch---------------HH
Confidence 1 111222221 1223444443 4556555332 111 11
Q ss_pred hhhhhhhhh------hhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhc
Q 003047 262 ASENALSRT------LSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTR 335 (854)
Q Consensus 262 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~ 335 (854)
.+.-.|+.. +.+-+..|.... +... +.++.+ +....+.....-..+|.++.|-..|
T Consensus 147 ~~lk~Ly~d~~K~~~i~~l~~~~~~~l-----~~~~---------~~~~~~----~~~~~~p~~~lw~~~~lAqhyd~~g 208 (517)
T PF12569_consen 147 SNLKPLYKDPEKAAIIESLVEEYVNSL-----ESNG---------SFSNGD----DEEKEPPSTLLWTLYFLAQHYDYLG 208 (517)
T ss_pred HHHHHHHcChhHHHHHHHHHHHHHHhh-----cccC---------CCCCcc----ccccCCchHHHHHHHHHHHHHHHhC
Confidence 111112211 112222222221 1000 000000 0000001111224577899999999
Q ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHH-HHHHHHcCCHHHHHH
Q 003047 336 NLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNL-GCIYYQLAKYHTSSV 414 (854)
Q Consensus 336 ~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnL-G~iy~~~g~~~eAi~ 414 (854)
++++|++.++++|+.. |..++.++.+|.++-..|++.+|.+.++.+-. .|+. ..+.|+. +.++.+.|+.++|++
T Consensus 209 ~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~-LD~~--DRyiNsK~aKy~LRa~~~e~A~~ 283 (517)
T PF12569_consen 209 DYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGDLKEAAEAMDEARE-LDLA--DRYINSKCAKYLLRAGRIEEAEK 283 (517)
T ss_pred CHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-CChh--hHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999 99999999999999999999999999999999 6774 3455554 667889999999998
Q ss_pred HHHHHHHhchhcccCCccccccccCCccHHHHH--HHHHHHHHCCCcHHHHHHHHHHHHhcCCC
Q 003047 415 FLSKALSNSASLRKDKPLKLLTFSQDKSLLITY--NCGLQYLACGKPVLAARCFQKSSLVFYKQ 476 (854)
Q Consensus 415 ~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~--nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~ 476 (854)
.+..-..... ++.. .-..--..|| ..|.+|.+.|++-.|+..|..+..++-+.
T Consensus 284 ~~~~Ftr~~~-----~~~~----~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~ 338 (517)
T PF12569_consen 284 TASLFTREDV-----DPLS----NLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDF 338 (517)
T ss_pred HHHhhcCCCC-----Cccc----CHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 7776544310 1000 0001124665 55999999999999999999998877543
No 127
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.57 E-value=1.5e-06 Score=102.26 Aligned_cols=134 Identities=16% Similarity=0.045 Sum_probs=110.7
Q ss_pred HHHHHHHHHhcC---HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhc--------CHHHHHHHHHHhhhc-cCCCcc
Q 003047 325 LYKVRFLLLTRN---LKHAKREVKLAMNIARGKDSSLALFLKSQLEYARR--------NHRKAIKLLLALSNR-TEMGIS 392 (854)
Q Consensus 325 l~K~~lyl~~~~---~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g--------~~~kAl~~l~kal~~-~dp~~~ 392 (854)
+.+++-|+.... +.+|+..++++++++ |++..++-.++.+|.... +..++.+...+++.. .+|. .
T Consensus 343 ~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~-~ 419 (517)
T PRK10153 343 FYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNV-L 419 (517)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcC-C
Confidence 456666766554 779999999999999 999999999888886643 344566666665542 2553 4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh
Q 003047 393 SMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLV 472 (854)
Q Consensus 393 a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l 472 (854)
+.+|..+|..+...|++++|..+|++|+.+ . +...+|..+|.++...|++++|++.|++|+.+
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L----------------~-ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDL----------------E-MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----------------C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 678888999999999999999999999998 2 35788999999999999999999999999999
Q ss_pred cCCCHH
Q 003047 473 FYKQPL 478 (854)
Q Consensus 473 ~P~~~~ 478 (854)
+|.+|.
T Consensus 483 ~P~~pt 488 (517)
T PRK10153 483 RPGENT 488 (517)
T ss_pred CCCCch
Confidence 999986
No 128
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.57 E-value=2.2e-07 Score=77.72 Aligned_cols=64 Identities=17% Similarity=0.168 Sum_probs=58.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCH
Q 003047 398 NLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQP 477 (854)
Q Consensus 398 nLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~ 477 (854)
.+|..|.+.|++++|+..|++++.. .|.+..+|+.+|.+++.+|++++|+..|+++++++|++|
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~----------------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ----------------DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC----------------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 5899999999999999999999998 355789999999999999999999999999999999986
No 129
>PRK15331 chaperone protein SicA; Provisional
Probab=98.56 E-value=5.3e-07 Score=89.05 Aligned_cols=128 Identities=16% Similarity=0.122 Sum_probs=104.9
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 003047 344 VKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNS 423 (854)
Q Consensus 344 lk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~ 423 (854)
++.+..+. ++..+..+..|.-++..|++++|.++|.-+.. .+|. +..++..||.++..+|+|++|+..|..|..+.
T Consensus 26 lk~l~gis--~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~-~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~ 101 (165)
T PRK15331 26 LKDVHGIP--QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCI-YDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL 101 (165)
T ss_pred HHHHhCCC--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34556666 77788999999999999999999999999888 7884 67899999999999999999999999999972
Q ss_pred hhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Q 003047 424 ASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEK 493 (854)
Q Consensus 424 ~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~ 493 (854)
. .++...|..|.||+.+|+.+.|..||..++. .|.+..+ -..+..++...+.
T Consensus 102 ~----------------~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l-~~~A~~~L~~l~~ 153 (165)
T PRK15331 102 K----------------NDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESL-RAKALVYLEALKT 153 (165)
T ss_pred c----------------CCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHH-HHHHHHHHHHHHc
Confidence 1 2234477899999999999999999999999 5665554 3445555555554
No 130
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.56 E-value=9e-07 Score=75.84 Aligned_cols=94 Identities=19% Similarity=0.168 Sum_probs=85.6
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHH
Q 003047 325 LYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYY 404 (854)
Q Consensus 325 l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~ 404 (854)
+..+.++..+|++++|+..+++++... |++..+++.+|.++...+++++|+++|++++. ..|. ...++..+|.+|.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~-~~~~~~~~~~~~~ 79 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALE-LDPD-NAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCc-chhHHHHHHHHHH
Confidence 345777888999999999999999999 99999999999999999999999999999998 6674 4568888999999
Q ss_pred HcCCHHHHHHHHHHHHHh
Q 003047 405 QLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 405 ~~g~~~eAi~~f~kAL~~ 422 (854)
.+|++++|..+|.+++..
T Consensus 80 ~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 KLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHhHHHHHHHHHHHHcc
Confidence 999999999999999876
No 131
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.54 E-value=1.3e-06 Score=80.82 Aligned_cols=97 Identities=14% Similarity=0.086 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCc--cHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDS---SLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGI--SSMFNN 397 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~---~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~--~a~~~n 397 (854)
+.+.++..++.+|++++|.+.++.++..+ |++ ..+++.+|.+++..|++++|+++|++++. ..|.. .+.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~~~~ 80 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK-KYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH-HCCCCCcccHHHH
Confidence 34557888899999999999999999999 987 57899999999999999999999999998 55542 356788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Q 003047 398 NLGCIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 398 nLG~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
++|.+|.++|++++|+.+|++++..
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHH
Confidence 9999999999999999999999998
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.52 E-value=3.5e-06 Score=94.87 Aligned_cols=158 Identities=15% Similarity=0.065 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHH
Q 003047 321 LKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLG 400 (854)
Q Consensus 321 ~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG 400 (854)
...++=++..+.+.|++++|...+..++... |+|+.++-+.+.+++..++.++|++.+++++. .+|+ ......++|
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~--P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~-l~P~-~~~l~~~~a 381 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQ--PDNPYYLELAGDILLEANKAKEAIERLKKALA-LDPN-SPLLQLNLA 381 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-cCCC-ccHHHHHHH
Confidence 3455566777889999999999999999999 99999999999999999999999999999999 7995 477888999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhchhcccC-CccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHH
Q 003047 401 CIYYQLAKYHTSSVFLSKALSNSASLRKD-KPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLL 479 (854)
Q Consensus 401 ~iy~~~g~~~eAi~~f~kAL~~~~~l~~~-~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~a 479 (854)
..|.+.|++.+|+.+++..+...+..... +-+....-......++....+..|...|++++|+..+..+.+...-+...
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~ 461 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQVKLGFPD 461 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhccCCcHH
Confidence 99999999999999999998874321000 00000000011223444444555555555555555555555555333333
Q ss_pred HHH
Q 003047 480 WLR 482 (854)
Q Consensus 480 w~~ 482 (854)
|.+
T Consensus 462 ~aR 464 (484)
T COG4783 462 WAR 464 (484)
T ss_pred HHH
Confidence 443
No 133
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.50 E-value=1.8e-06 Score=93.11 Aligned_cols=108 Identities=12% Similarity=0.084 Sum_probs=85.6
Q ss_pred HHHHHHHHHH-HHhcCHHHHHHHHHHhhhccCCCc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCcccc
Q 003047 358 LALFLKSQLE-YARRNHRKAIKLLLALSNRTEMGI--SSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKL 434 (854)
Q Consensus 358 ~a~~lla~ly-~~~g~~~kAl~~l~kal~~~dp~~--~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~ 434 (854)
...|..|..+ +..|+|++|+..|++.++ ..|+. .+.+++.+|.+|+..|++++|+.+|++++...++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~-~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~--------- 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVK-KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK--------- 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---------
Confidence 4445555544 556899999999999988 56642 2567888999999999999999999999987331
Q ss_pred ccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHH
Q 003047 435 LTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLL 479 (854)
Q Consensus 435 ~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~a 479 (854)
.+..+++++.+|.++..+|++++|...|++++..+|+...+
T Consensus 213 ----s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 213 ----SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred ----CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 23457889999999999999999999999999999998754
No 134
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.49 E-value=4.3e-07 Score=80.25 Aligned_cols=81 Identities=20% Similarity=0.200 Sum_probs=68.8
Q ss_pred hcCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHH
Q 003047 334 TRNLKHAKREVKLAMNIARGKD--SSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHT 411 (854)
Q Consensus 334 ~~~~~~A~~elk~al~~~~~P~--~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~e 411 (854)
+|+++.|+..+++++... |. +..+++.+|.+|+..|+|++|++++++ ++ .+|. +......+|.+|.++|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~--~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~-~~~~-~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELD--PTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK-LDPS-NPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHHH--CGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT-HHHC-HHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC-CCCC-CHHHHHHHHHHHHHhCCHHH
Confidence 688999999999999999 95 567788899999999999999999999 55 3453 45666678999999999999
Q ss_pred HHHHHHHH
Q 003047 412 SSVFLSKA 419 (854)
Q Consensus 412 Ai~~f~kA 419 (854)
|+..|+++
T Consensus 77 Ai~~l~~~ 84 (84)
T PF12895_consen 77 AIKALEKA 84 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 99999986
No 135
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.49 E-value=7.1e-06 Score=100.44 Aligned_cols=132 Identities=8% Similarity=-0.101 Sum_probs=98.3
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccc
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLK 433 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~ 433 (854)
|.+..++..+...|...+++++|+.+++..+. ..|. ...+|+.+|.+|++.+++..|... +++.+.+.-.+....+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~-~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLK-EHKK-SISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE 103 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCc-ceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence 88888888888888888888888888888887 6674 456777788888888888887776 6666532110000000
Q ss_pred ---cccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003047 434 ---LLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLM 489 (854)
Q Consensus 434 ---~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~ 489 (854)
......+..-.+++.+|.||-.+|++++|+.+|+++|+++|+++.+..++|..+..
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae 162 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE 162 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 00001122346899999999999999999999999999999999999999988774
No 136
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.49 E-value=7.3e-06 Score=89.42 Aligned_cols=104 Identities=11% Similarity=0.005 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhhc--cCCC---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCcccc
Q 003047 360 LFLKSQLEYARRNHRKAIKLLLALSNR--TEMG---ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKL 434 (854)
Q Consensus 360 ~~lla~ly~~~g~~~kAl~~l~kal~~--~dp~---~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~ 434 (854)
+...|.++...|+|++|+++|+++... ..+. .....+...+.+|+.+|++..|...|++....++.+..
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~------ 231 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS------ 231 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC------
Confidence 345567788889999999999998762 1111 12235667899999999999999999999888665531
Q ss_pred ccccCCccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhcC
Q 003047 435 LTFSQDKSLLITYNCGLQYLA--CGKPVLAARCFQKSSLVFY 474 (854)
Q Consensus 435 ~~~~~~~~~~~~~nLG~~ll~--~Gk~eeAl~~y~kAL~l~P 474 (854)
.........|-.++-. ...+++|+.-|++...++|
T Consensus 232 -----s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 232 -----SREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp -----SHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred -----cHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 2223445555555443 3348888888888777765
No 137
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=9.3e-07 Score=97.70 Aligned_cols=111 Identities=18% Similarity=0.126 Sum_probs=95.0
Q ss_pred HHHHHHHHhcCHHHHHHHHHHhhhcc------CCC-------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhccc
Q 003047 362 LKSQLEYARRNHRKAIKLLLALSNRT------EMG-------ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRK 428 (854)
Q Consensus 362 lla~ly~~~g~~~kAl~~l~kal~~~------dp~-------~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~ 428 (854)
..|+.|+..|+|..|+..|++++... ++. ....+++||+.+|.++++|.+|+.+..++|..
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~------ 286 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL------ 286 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc------
Confidence 56788888888888888888877620 000 12357889999999999999999999999998
Q ss_pred CCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 429 DKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 429 ~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
.+.+..++|..|.+++.+|+|+.|+..|+++++++|+|-.+...|..|-.
T Consensus 287 ----------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 287 ----------DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred ----------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999988766
No 138
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.46 E-value=2.1e-06 Score=93.89 Aligned_cols=145 Identities=14% Similarity=0.058 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
+.+..+.+|...|++++|++.+.+. ++.+...+.-.+++.++|++.|.+.++...+ .++ +...+...-+++
T Consensus 104 ~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~-~~e-D~~l~qLa~awv 174 (290)
T PF04733_consen 104 VQLLAATILFHEGDYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKNMQQ-IDE-DSILTQLAEAWV 174 (290)
T ss_dssp HHHHHHHHHCCCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC-CSC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCC-cHHHHHHHHHHH
Confidence 5566788888899999998776432 5678888999999999999999999999887 455 233333334666
Q ss_pred HHHcC--CHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHH
Q 003047 403 YYQLA--KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLW 480 (854)
Q Consensus 403 y~~~g--~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw 480 (854)
....| ++.+|...|+..-.. .+..+.++..++.+++.+|+|++|.+.+.+++..+|+++.++
T Consensus 175 ~l~~g~e~~~~A~y~f~El~~~----------------~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 175 NLATGGEKYQDAFYIFEELSDK----------------FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp HHHHTTTCCCHHHHHHHHHHCC----------------S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred HHHhCchhHHHHHHHHHHHHhc----------------cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 66666 699999999995432 123567888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 003047 481 LRLAECCLMALE 492 (854)
Q Consensus 481 ~~La~~~i~~~~ 492 (854)
.+++-|+...++
T Consensus 239 aNliv~~~~~gk 250 (290)
T PF04733_consen 239 ANLIVCSLHLGK 250 (290)
T ss_dssp HHHHHHHHHTT-
T ss_pred HHHHHHHHHhCC
Confidence 999988885444
No 139
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.45 E-value=4.5e-07 Score=78.71 Aligned_cols=73 Identities=26% Similarity=0.325 Sum_probs=60.7
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Q 003047 392 SSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSL 471 (854)
Q Consensus 392 ~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~ 471 (854)
.+.+++++|.+|..+|++++|+.+|++++.+...++.. .+....+++++|.++..+|++++|+++|+++++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~---------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDD---------HPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTH---------HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCC---------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46789999999999999999999999999984333211 112367899999999999999999999999998
Q ss_pred hc
Q 003047 472 VF 473 (854)
Q Consensus 472 l~ 473 (854)
+.
T Consensus 75 i~ 76 (78)
T PF13424_consen 75 IF 76 (78)
T ss_dssp HH
T ss_pred hh
Confidence 75
No 140
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.45 E-value=0.0012 Score=73.23 Aligned_cols=295 Identities=13% Similarity=0.040 Sum_probs=185.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCC
Q 003047 361 FLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQD 440 (854)
Q Consensus 361 ~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~ 440 (854)
...|..-+..|+|.+|.+...+.-+ -.+ .+...|.--+..-.++|+++.|-.|+.++-+.- .+
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae-~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~---------------~~ 150 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAE-HGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA---------------GD 150 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhh-cCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccC---------------CC
Confidence 3445666678999999999988766 233 233444333556678999999999999987761 12
Q ss_pred ccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccce
Q 003047 441 KSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRY 520 (854)
Q Consensus 441 ~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~ 520 (854)
+.-.+.......++..|++..|..-..+++...|.++.+..-...||+..+.- .+ +..
T Consensus 151 ~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~---~~----------ll~--------- 208 (400)
T COG3071 151 DTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAW---QA----------LLA--------- 208 (400)
T ss_pred chHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccH---HH----------HHH---------
Confidence 23445567788899999999999999999999999999988888888854443 11 000
Q ss_pred eeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHh----hcCCCcccccccCCCCCCccccccccccccc
Q 003047 521 LVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALH----LLNYPDLNYSKFGLPSNSSVEESESSEGASS 596 (854)
Q Consensus 521 l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~----L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (854)
+.+...+.... +-+++...=++|.. -.-+.... .
T Consensus 209 --~l~~L~ka~~l------------------~~~e~~~le~~a~~glL~q~~~~~~~---------------~------- 246 (400)
T COG3071 209 --ILPKLRKAGLL------------------SDEEAARLEQQAWEGLLQQARDDNGS---------------E------- 246 (400)
T ss_pred --HHHHHHHccCC------------------ChHHHHHHHHHHHHHHHHHHhccccc---------------h-------
Confidence 11110011111 11223332233322 11110000 0
Q ss_pred ccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHH--HHHHHHHHHHHHHcCCHHH
Q 003047 597 KNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIK--QALLANLAYVELEMENPVK 674 (854)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~--~~~l~~la~v~l~lg~~~~ 674 (854)
| .+ ..+.. .+-.+| ..+.+.++--+..+|++++
T Consensus 247 -------------------------g----L~-----~~W~~-----------~pr~lr~~p~l~~~~a~~li~l~~~~~ 281 (400)
T COG3071 247 -------------------------G----LK-----TWWKN-----------QPRKLRNDPELVVAYAERLIRLGDHDE 281 (400)
T ss_pred -------------------------H----HH-----HHHHh-----------ccHHhhcChhHHHHHHHHHHHcCChHH
Confidence 0 00 00000 000001 0223344556789999999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCC
Q 003047 675 ALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGP 754 (854)
Q Consensus 675 Al~~~~~lL~~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 754 (854)
|..+.++.|...-++..+.+.+. ...+++..=++..+..+.
T Consensus 282 A~~~i~~~Lk~~~D~~L~~~~~~-------l~~~d~~~l~k~~e~~l~-------------------------------- 322 (400)
T COG3071 282 AQEIIEDALKRQWDPRLCRLIPR-------LRPGDPEPLIKAAEKWLK-------------------------------- 322 (400)
T ss_pred HHHHHHHHHHhccChhHHHHHhh-------cCCCCchHHHHHHHHHHH--------------------------------
Confidence 99999999986655554444433 344555555555555552
Q ss_pred CCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003047 755 AAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAK 834 (854)
Q Consensus 755 ~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~ 834 (854)
++|. ++.+++.||..+...+.|.+|...++.|++..|.. .....+++++.++|+.++|-++
T Consensus 323 -------------~h~~-----~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~ 383 (400)
T COG3071 323 -------------QHPE-----DPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAEQV 383 (400)
T ss_pred -------------hCCC-----ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHH
Confidence 1223 46889999999999999999999999999988654 4566678888899999999998
Q ss_pred HHhcC
Q 003047 835 LKYCN 839 (854)
Q Consensus 835 lk~~~ 839 (854)
-+...
T Consensus 384 r~e~L 388 (400)
T COG3071 384 RREAL 388 (400)
T ss_pred HHHHH
Confidence 87743
No 141
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.40 E-value=1.2e-05 Score=83.51 Aligned_cols=167 Identities=15% Similarity=0.036 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCC--ccHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDS---SLALFLKSQLEYARRNHRKAIKLLLALSNRTEMG--ISSMFNN 397 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~---~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~--~~a~~~n 397 (854)
-.+.++..++..|++.+|++.++.++... |.. ..+++.+|..++..|+|.+|+..+++.+. ..|. ..+.+++
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~--P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~-~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRY--PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK-LYPNSPKADYALY 83 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-H-TT-TTHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCCCcchhhHHH
Confidence 44557888999999999999999999999 876 57889999999999999999999999998 4443 4567888
Q ss_pred HHHHHHHHcCC-----------HHHHHHHHHHHHHhchhccc-CCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHH
Q 003047 398 NLGCIYYQLAK-----------YHTSSVFLSKALSNSASLRK-DKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARC 465 (854)
Q Consensus 398 nLG~iy~~~g~-----------~~eAi~~f~kAL~~~~~l~~-~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~ 465 (854)
.+|.++..+.+ ..+|+..|++.+...|+-.- .+.......-.+.-+.--+.+|..|+..|+|..|+..
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r 163 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIR 163 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 89999876543 34788888888887543110 0000000000112234456789999999999999999
Q ss_pred HHHHHHhcCCCHH---HHHHHHHHHHHHHh
Q 003047 466 FQKSSLVFYKQPL---LWLRLAECCLMALE 492 (854)
Q Consensus 466 y~kAL~l~P~~~~---aw~~La~~~i~~~~ 492 (854)
|+.+++-+|+.+. ++..|++++..++.
T Consensus 164 ~~~v~~~yp~t~~~~~al~~l~~~y~~l~~ 193 (203)
T PF13525_consen 164 FQYVIENYPDTPAAEEALARLAEAYYKLGL 193 (203)
T ss_dssp HHHHHHHSTTSHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhCC
Confidence 9999999999964 58888888885433
No 142
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.40 E-value=6.1e-06 Score=82.66 Aligned_cols=101 Identities=13% Similarity=0.043 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHH
Q 003047 320 KLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDS---SLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFN 396 (854)
Q Consensus 320 ~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~---~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~ 396 (854)
.....+..+.++..+|++++|+..+++++.+. |+. +.+++.+|.++...|++++|+++|++++. .+|. ....+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~--~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~-~~~~-~~~~~ 109 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE--IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE-RNPF-LPQAL 109 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcC-cHHHH
Confidence 34466778889999999999999999999998 763 45899999999999999999999999999 6774 57788
Q ss_pred HHHHHHHH-------HcCCHHHHHHHHHHHHHhch
Q 003047 397 NNLGCIYY-------QLAKYHTSSVFLSKALSNSA 424 (854)
Q Consensus 397 nnLG~iy~-------~~g~~~eAi~~f~kAL~~~~ 424 (854)
+++|.+|. .+|++++|+.+|++++....
T Consensus 110 ~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 144 (168)
T CHL00033 110 NNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWK 144 (168)
T ss_pred HHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHH
Confidence 89999999 88899988888888887643
No 143
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.00027 Score=74.52 Aligned_cols=136 Identities=22% Similarity=0.242 Sum_probs=108.9
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----HhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEY----ARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~----~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
+.+|++.+.+++-|..++++..+++ -+ ..+..+|+.|. ..+++++|+-+|+..-.+..| .+..++.++++
T Consensus 143 ~VqI~lk~~r~d~A~~~lk~mq~id--ed--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~--T~~llnG~Av~ 216 (299)
T KOG3081|consen 143 NVQILLKMHRFDLAEKELKKMQQID--ED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPP--TPLLLNGQAVC 216 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc--hH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCC--ChHHHccHHHH
Confidence 4668888999999999999999998 33 34444555554 345799999999998774455 46789999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHH-HHHHHHHHhcCCCHHH-H
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAA-RCFQKSSLVFYKQPLL-W 480 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl-~~y~kAL~l~P~~~~a-w 480 (854)
+..+|+|++|...++.||.. .+.+++++-|+-.+-.+.|+..++. +...+.....|+++.+ +
T Consensus 217 ~l~~~~~eeAe~lL~eaL~k----------------d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk~ 280 (299)
T KOG3081|consen 217 HLQLGRYEEAESLLEEALDK----------------DAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVKH 280 (299)
T ss_pred HHHhcCHHHHHHHHHHHHhc----------------cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHHH
Confidence 99999999999999999997 3456899999999999999988877 6667777788888765 3
Q ss_pred HHHH
Q 003047 481 LRLA 484 (854)
Q Consensus 481 ~~La 484 (854)
++-.
T Consensus 281 ~~ek 284 (299)
T KOG3081|consen 281 LNEK 284 (299)
T ss_pred HHHH
Confidence 4333
No 144
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.38 E-value=7.8e-05 Score=77.38 Aligned_cols=193 Identities=12% Similarity=0.019 Sum_probs=129.1
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Q 003047 391 ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSS 470 (854)
Q Consensus 391 ~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL 470 (854)
..+..++..|..++..|+|.+|+..|++.+...|. .+-...+.+.+|.+++..|++++|+..|++.+
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~-------------s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi 69 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPN-------------SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFI 69 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-------------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-------------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34677888999999999999999999999987431 12346788999999999999999999999999
Q ss_pred HhcCCCH---HHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCC
Q 003047 471 LVFYKQP---LLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDG 547 (854)
Q Consensus 471 ~l~P~~~---~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~ 547 (854)
..+|+++ .+++.+|.|......... .. ..+
T Consensus 70 ~~yP~~~~~~~A~Y~~g~~~~~~~~~~~-----------------------------~~-----~~D------------- 102 (203)
T PF13525_consen 70 KLYPNSPKADYALYMLGLSYYKQIPGIL-----------------------------RS-----DRD------------- 102 (203)
T ss_dssp HH-TT-TTHHHHHHHHHHHHHHHHHHHH------------------------------T-----T---------------
T ss_pred HHCCCCcchhhHHHHHHHHHHHhCccch-----------------------------hc-----ccC-------------
Confidence 9999985 579999999885433200 00 000
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccc
Q 003047 548 QPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQ 627 (854)
Q Consensus 548 ~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~ 627 (854)
......|...|+..+...|+..-.. .+ ..
T Consensus 103 --~~~~~~A~~~~~~li~~yP~S~y~~-----------------------~A-------------------------~~- 131 (203)
T PF13525_consen 103 --QTSTRKAIEEFEELIKRYPNSEYAE-----------------------EA-------------------------KK- 131 (203)
T ss_dssp ---HHHHHHHHHHHHHHHH-TTSTTHH-----------------------HH-------------------------HH-
T ss_pred --hHHHHHHHHHHHHHHHHCcCchHHH-----------------------HH-------------------------HH-
Confidence 1135789999999999999954310 00 00
Q ss_pred cCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHh
Q 003047 628 KGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCL 706 (854)
Q Consensus 628 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~ 706 (854)
.+.. +......--...|--++..|.|..|+..++.++. .|+.+..-. +..++++++..
T Consensus 132 ---~l~~----------------l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~--al~~l~~~y~~ 190 (203)
T PF13525_consen 132 ---RLAE----------------LRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEE--ALARLAEAYYK 190 (203)
T ss_dssp ---HHHH----------------HHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHH--HHHHHHHHHHH
T ss_pred ---HHHH----------------HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHH--HHHHHHHHHHH
Confidence 0000 0000001123457789999999999999999998 677655444 44667889999
Q ss_pred cCCHHHHHH
Q 003047 707 LNRPKEAAE 715 (854)
Q Consensus 707 lgr~~eAl~ 715 (854)
+|..+.|..
T Consensus 191 l~~~~~a~~ 199 (203)
T PF13525_consen 191 LGLKQAADT 199 (203)
T ss_dssp TT-HHHHHH
T ss_pred hCChHHHHH
Confidence 999985543
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.36 E-value=1.8e-05 Score=77.36 Aligned_cols=128 Identities=23% Similarity=0.155 Sum_probs=101.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhh
Q 003047 661 NLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWR 740 (854)
Q Consensus 661 ~la~v~l~lg~~~~Al~~~~~lL~~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~ 740 (854)
..+...+..+++..+...+++++...+.+ .|..++.+.+|..++..|++++|+..|+..+....+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~s-~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d-------------- 80 (145)
T PF09976_consen 16 EQALQALQAGDPAKAEAAAEQLAKDYPSS-PYAALAALQLAKAAYEQGDYDEAKAALEKALANAPD-------------- 80 (145)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCC-hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC--------------
Confidence 33445557999999999999999743332 577889999999999999999999999999931100
Q ss_pred HhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 003047 741 VEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIY 820 (854)
Q Consensus 741 ~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y 820 (854)
| .-...+++.||.++..+|++++|+..++++ .-.+-.+.+..+++-
T Consensus 81 ------------------------~---------~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gd 126 (145)
T PF09976_consen 81 ------------------------P---------ELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGD 126 (145)
T ss_pred ------------------------H---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHH
Confidence 1 115778899999999999999999999773 222334678889999
Q ss_pred HHHhcCCHHHHHHHHHh
Q 003047 821 VDLMLGKSQEALAKLKY 837 (854)
Q Consensus 821 ~~L~~G~~~eA~~~lk~ 837 (854)
+++++|++++|...+++
T Consensus 127 i~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 127 IYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 99999999999999875
No 146
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.34 E-value=1.4e-05 Score=80.59 Aligned_cols=97 Identities=14% Similarity=0.110 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHH
Q 003047 322 KLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDS---SLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNN 398 (854)
Q Consensus 322 ~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~---~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nn 398 (854)
...+.++.+|...|++++|+..+++++.+. |+. ..+++.+|.++...|++++|+++|.+++. ..|. ....+.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~-~~~~~~~ 111 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLE--EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE-LNPK-QPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcc-cHHHHHH
Confidence 356778889999999999999999999987 653 57899999999999999999999999999 7884 5778889
Q ss_pred HHHHHHHcCC-------HHHHHHHHHHHHHh
Q 003047 399 LGCIYYQLAK-------YHTSSVFLSKALSN 422 (854)
Q Consensus 399 LG~iy~~~g~-------~~eAi~~f~kAL~~ 422 (854)
+|.+|..+|+ +++|+.+|++|++.
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~ 142 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEALFDKAAEY 142 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHHHHHHHHHH
Confidence 9999988776 44555555555554
No 147
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.33 E-value=0.0001 Score=78.70 Aligned_cols=65 Identities=15% Similarity=0.150 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 003047 25 SVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKI---LHNIAIAEYFRDGCTDPKKLLEALNNVKNKSE 95 (854)
Q Consensus 25 ~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~---l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~ 95 (854)
...+.++.+|...+.+|+|++|++.|++++...|..+.+ ++++|.++|.. .++.+++..+++-++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~------~~y~~A~~~~e~fi~ 97 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKN------ADLPLAQAAIDRFIR 97 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhc------CCHHHHHHHHHHHHH
Confidence 356779999999999999999999999999999997644 58999888854 446667777777774
No 148
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.31 E-value=6.1e-07 Score=77.84 Aligned_cols=71 Identities=20% Similarity=0.137 Sum_probs=59.7
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc---cCCC--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 003047 353 GKDSSLALFLKSQLEYARRNHRKAIKLLLALSNR---TEMG--ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNS 423 (854)
Q Consensus 353 ~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~---~dp~--~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~ 423 (854)
||+-..++..+|.+|..+|+|++|+++|++++.. ..+. ..+.++++||.+|..+|++++|+++|++++.+.
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 3666788999999999999999999999999973 1111 247789999999999999999999999999974
No 149
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=2e-05 Score=84.58 Aligned_cols=134 Identities=10% Similarity=-0.028 Sum_probs=112.0
Q ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHc-C--CHHHH
Q 003047 336 NLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQL-A--KYHTS 412 (854)
Q Consensus 336 ~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~-g--~~~eA 412 (854)
..++-+..++.-+..+ |+|.+-|.++|.+|+.+|++..|...|.++++ ..| +++.++..+|.++..+ | .-.++
T Consensus 137 ~~~~l~a~Le~~L~~n--P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r-L~g-~n~~~~~g~aeaL~~~a~~~~ta~a 212 (287)
T COG4235 137 EMEALIARLETHLQQN--PGDAEGWDLLGRAYMALGRASDALLAYRNALR-LAG-DNPEILLGLAEALYYQAGQQMTAKA 212 (287)
T ss_pred cHHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH-hCC-CCHHHHHHHHHHHHHhcCCcccHHH
Confidence 3455667778888889 99999999999999999999999999999999 788 4688898888876543 3 35789
Q ss_pred HHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 003047 413 SVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMA 490 (854)
Q Consensus 413 i~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~ 490 (854)
...|+++|.. .+.+..+.+.||..++..|+|.+|...+++.+...|.+.. |..+.+..|+.
T Consensus 213 ~~ll~~al~~----------------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~-rr~~ie~~ia~ 273 (287)
T COG4235 213 RALLRQALAL----------------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP-RRSLIERSIAR 273 (287)
T ss_pred HHHHHHHHhc----------------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc-hHHHHHHHHHH
Confidence 9999999998 3456788889999999999999999999999999987755 55555555543
No 150
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.30 E-value=2.6e-06 Score=71.19 Aligned_cols=60 Identities=18% Similarity=0.243 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003047 361 FLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 361 ~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
+.+|..++..|++++|+++|+++++ .+|. ++.++..+|.++..+|++++|+.+|++++..
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~-~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALK-QDPD-NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHC-CSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHH-HCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3567788888888888888888888 6774 5777888888888888888888888888876
No 151
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.27 E-value=4.2e-05 Score=81.68 Aligned_cols=163 Identities=11% Similarity=-0.048 Sum_probs=122.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHH---HHHHHHHHHhcCHHHHHHHHHHhhhccCCC--ccHHHHHH
Q 003047 324 QLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLAL---FLKSQLEYARRNHRKAIKLLLALSNRTEMG--ISSMFNNN 398 (854)
Q Consensus 324 ~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~---~lla~ly~~~g~~~kAl~~l~kal~~~dp~--~~a~~~nn 398 (854)
.+.++.-++..|++++|++.++.++... |..+.+. +.+|.+|+..++|++|+..+++.++ ..|+ ..+.+++.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~-~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR-LNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCcCCCchHHHHHH
Confidence 4456778888999999999999999999 9887665 8999999999999999999999999 4443 45788888
Q ss_pred HHHHHHHcCC------------------HHHHHHHHHHHHHhchhccc-CCccccccccCCccHHHHHHHHHHHHHCCCc
Q 003047 399 LGCIYYQLAK------------------YHTSSVFLSKALSNSASLRK-DKPLKLLTFSQDKSLLITYNCGLQYLACGKP 459 (854)
Q Consensus 399 LG~iy~~~g~------------------~~eAi~~f~kAL~~~~~l~~-~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~ 459 (854)
+|.++..+++ -.+|+..|++.+...|+-.- .+.-.....-.+.-+.--+.+|..|++.|+|
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y 191 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAY 191 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 9998765541 24688888888887543110 0000000000112234445789999999999
Q ss_pred HHHHHHHHHHHHhcCCCH---HHHHHHHHHHHH
Q 003047 460 VLAARCFQKSSLVFYKQP---LLWLRLAECCLM 489 (854)
Q Consensus 460 eeAl~~y~kAL~l~P~~~---~aw~~La~~~i~ 489 (854)
..|+.-|+.++.-+|+.+ ++.+.|++.+..
T Consensus 192 ~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~ 224 (243)
T PRK10866 192 VAVVNRVEQMLRDYPDTQATRDALPLMENAYRQ 224 (243)
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence 999999999999999885 568888888874
No 152
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.19 E-value=2.1e-05 Score=74.72 Aligned_cols=101 Identities=15% Similarity=0.089 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhc-cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCcccccc
Q 003047 358 LALFLKSQLEYARRNHRKAIKLLLALSNR-TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLT 436 (854)
Q Consensus 358 ~a~~lla~ly~~~g~~~kAl~~l~kal~~-~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~ 436 (854)
.++|.+|..+...|+.++|+.+|++++.. ..+.....++..+|..|..+|++++|+..|++++...++ +
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~----~------ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD----D------ 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----c------
Confidence 57899999999999999999999999983 112133668889999999999999999999999986321 0
Q ss_pred ccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Q 003047 437 FSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSL 471 (854)
Q Consensus 437 ~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~ 471 (854)
+-...+...++.++...|++++|+..+..++.
T Consensus 72 ---~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 72 ---ELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ---cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11334555679999999999999999988776
No 153
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.19 E-value=4.1e-05 Score=90.17 Aligned_cols=128 Identities=16% Similarity=0.008 Sum_probs=96.5
Q ss_pred HHHHHHHHhcCCCCCHHHH--HHHHHHHHHhcC---HHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCC--------
Q 003047 342 REVKLAMNIARGKDSSLAL--FLKSQLEYARRN---HRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAK-------- 408 (854)
Q Consensus 342 ~elk~al~~~~~P~~~~a~--~lla~ly~~~g~---~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~-------- 408 (854)
.+.+++.... |.+..+| ++.|..|+..+. +.+|+.+|+++++ .+|+ .+.++-.++.+|.....
T Consensus 324 ~e~~~~~~~~--~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~-ldP~-~a~a~A~la~~~~~~~~~~~~~~~~ 399 (517)
T PRK10153 324 RMQERLQQGL--PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK-SEPD-FTYAQAEKALADIVRHSQQPLDEKQ 399 (517)
T ss_pred HHHHHHhccC--CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-hCCC-cHHHHHHHHHHHHHHHhcCCccHHH
Confidence 3444555556 8888876 788988886655 8899999999999 8995 68888888888865422
Q ss_pred HHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 409 YHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 409 ~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
...+.....+++.+.. .+..+.++.-+|..+...|++++|...|++|+.++| +..+|..+|.++.
T Consensus 400 l~~a~~~~~~a~al~~--------------~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~ 464 (517)
T PRK10153 400 LAALSTELDNIVALPE--------------LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYE 464 (517)
T ss_pred HHHHHHHHHHhhhccc--------------CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 3344444455444300 122356777789999999999999999999999999 5789999999888
No 154
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.19 E-value=1.9e-05 Score=85.22 Aligned_cols=89 Identities=11% Similarity=0.044 Sum_probs=80.6
Q ss_pred HHhcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCC--ccHHHHHHHHHHHHHc
Q 003047 332 LLTRNLKHAKREVKLAMNIARGKDS---SLALFLKSQLEYARRNHRKAIKLLLALSNRTEMG--ISSMFNNNLGCIYYQL 406 (854)
Q Consensus 332 l~~~~~~~A~~elk~al~~~~~P~~---~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~--~~a~~~nnLG~iy~~~ 406 (854)
+..|++++|+..++..+..+ |++ +.+++.+|.+|+..|++++|+..|.+++. ..|+ ..+.++..+|.+|..+
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~-~yP~s~~~~dAl~klg~~~~~~ 230 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVK-NYPKSPKAADAMFKVGVIMQDK 230 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCCCcchhHHHHHHHHHHHHc
Confidence 45689999999999999999 999 58999999999999999999999999997 3332 4678899999999999
Q ss_pred CCHHHHHHHHHHHHHhc
Q 003047 407 AKYHTSSVFLSKALSNS 423 (854)
Q Consensus 407 g~~~eAi~~f~kAL~~~ 423 (854)
|++++|+.+|++++...
T Consensus 231 g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 231 GDTAKAKAVYQQVIKKY 247 (263)
T ss_pred CCHHHHHHHHHHHHHHC
Confidence 99999999999999973
No 155
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.18 E-value=4.1e-06 Score=70.43 Aligned_cols=67 Identities=18% Similarity=0.087 Sum_probs=60.1
Q ss_pred HHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHH
Q 003047 404 YQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRL 483 (854)
Q Consensus 404 ~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~L 483 (854)
.+.|++++|+..|++++.. .|.+..+++.+|.+|+..|++++|...+.+++..+|+++.+|.-+
T Consensus 2 l~~~~~~~A~~~~~~~l~~----------------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR----------------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH----------------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 5789999999999999998 355788999999999999999999999999999999999988877
Q ss_pred HHH
Q 003047 484 AEC 486 (854)
Q Consensus 484 a~~ 486 (854)
+.+
T Consensus 66 a~i 68 (68)
T PF14559_consen 66 AQI 68 (68)
T ss_dssp HHH
T ss_pred hcC
Confidence 753
No 156
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.09 E-value=6.7e-05 Score=72.78 Aligned_cols=109 Identities=19% Similarity=0.215 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCcccc
Q 003047 357 SLALFLKSQLEYARRNHRKAIKLLLALSNRTEM--GISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKL 434 (854)
Q Consensus 357 ~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp--~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~ 434 (854)
+..++..|...+..|+|++|++.|+.+... .| .....+...||.+|++.+++++|+..+++-+++.|.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~--------- 79 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT--------- 79 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------
Confidence 456788899999999999999999999884 33 244677888999999999999999999999998431
Q ss_pred ccccCCccHHHHHHHHHHHHHCCC---------------cHHHHHHHHHHHHhcCCCHHH
Q 003047 435 LTFSQDKSLLITYNCGLQYLACGK---------------PVLAARCFQKSSLVFYKQPLL 479 (854)
Q Consensus 435 ~~~~~~~~~~~~~nLG~~ll~~Gk---------------~eeAl~~y~kAL~l~P~~~~a 479 (854)
.+.-+.++|..|++++.+.. ..+|+..|++.+..+|++..+
T Consensus 80 ----hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 80 ----HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred ----CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 22346789999999999887 889999999999999998754
No 157
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.09 E-value=1.1e-05 Score=86.92 Aligned_cols=108 Identities=10% Similarity=-0.037 Sum_probs=95.7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCC
Q 003047 361 FLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQD 440 (854)
Q Consensus 361 ~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~ 440 (854)
-.+|+-|+.+|+|++||.||.+.+. .+|. ++..+.|.+..|++++++..|..-+..|+.++.
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia-~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~---------------- 162 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIA-VYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALDK---------------- 162 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhc-cCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH----------------
Confidence 4578999999999999999999999 7894 688999999999999999999999999999832
Q ss_pred ccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 003047 441 KSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAEC 486 (854)
Q Consensus 441 ~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~ 486 (854)
....+|-..|.+-..+|+.+||.+.|+.+|.+.|++-.+.-.++.+
T Consensus 163 ~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 163 LYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence 2346777889999999999999999999999999998876666644
No 158
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.08 E-value=1.6e-05 Score=67.79 Aligned_cols=70 Identities=17% Similarity=0.084 Sum_probs=62.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHH
Q 003047 399 LGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPL 478 (854)
Q Consensus 399 LG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~ 478 (854)
|..+|.+.+++++|++++++++.. .|.+...|+..|.++..+|++++|.++|++++++.|+++.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~----------------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL----------------DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh----------------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 357899999999999999999998 3456789999999999999999999999999999999988
Q ss_pred HHHHHH
Q 003047 479 LWLRLA 484 (854)
Q Consensus 479 aw~~La 484 (854)
+..-++
T Consensus 65 ~~~~~a 70 (73)
T PF13371_consen 65 ARALRA 70 (73)
T ss_pred HHHHHH
Confidence 765544
No 159
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.08 E-value=1.2e-05 Score=90.91 Aligned_cols=67 Identities=9% Similarity=0.011 Sum_probs=46.0
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISS---MFNNNLGCIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a---~~~nnLG~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
|+++.+++++|..|+..|+|++|+.+|++++. .+|+ .+ .+|+|+|++|..+|++++|+.+|++|+++
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe-L~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE-LNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 67777777777777777777777777777777 6774 33 23666777777777777777777777664
No 160
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.07 E-value=0.0013 Score=71.76 Aligned_cols=318 Identities=15% Similarity=0.092 Sum_probs=188.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----------CHHHH-----------HHHHHHHHHHhCCCChhHH
Q 003047 25 SVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPD----------DPKIL-----------HNIAIAEYFRDGCTDPKKL 83 (854)
Q Consensus 25 ~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~----------~~~~l-----------~nla~~~~~~~~~~~~~~~ 83 (854)
+.+++-...|++.++..++.+|+..|.+.|..-.+ -+.+. +-+.++.... .+.+..-.
T Consensus 4 ~q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~-~~~ds~~~ 82 (518)
T KOG1941|consen 4 DQTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAR-ELEDSDFL 82 (518)
T ss_pred chhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 45677788999999999999999999999984111 12222 2222222221 12233333
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHH
Q 003047 84 LEALNNVKNKSEELARATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYA 163 (854)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~ 163 (854)
.++..++.+.-+.+..... -..|. -+..|..+ . -...++- ....-+|.+...++.|.
T Consensus 83 ~ea~lnlar~~e~l~~f~k---------t~~y~--k~~l~lpg---------t-~~~~~~g--q~~l~~~~Ahlgls~fq 139 (518)
T KOG1941|consen 83 LEAYLNLARSNEKLCEFHK---------TISYC--KTCLGLPG---------T-RAGQLGG--QVSLSMGNAHLGLSVFQ 139 (518)
T ss_pred HHHHHHHHHHHHHHHHhhh---------HHHHH--HHHhcCCC---------C-Ccccccc--hhhhhHHHHhhhHHHHH
Confidence 5555555555443311110 00010 00000000 0 0000111 24445899999999999
Q ss_pred HHHHHHHHhhhccCCCchhh-HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCC
Q 003047 164 KALSVLEPLYQNIEPIDETT-ALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSV 242 (854)
Q Consensus 164 ~A~~~~e~l~~~~~~~~e~~-~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (854)
++++.||+++++-..++|.+ -..||..|+.++-+.++|+||+ -|.-|+..+.+....+.
T Consensus 140 ~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal---~f~~kA~~lv~s~~l~d----------------- 199 (518)
T KOG1941|consen 140 KALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKAL---FFPCKAAELVNSYGLKD----------------- 199 (518)
T ss_pred HHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHh---hhhHhHHHHHHhcCcCc-----------------
Confidence 99999999999999998885 6679999999999999999997 57778877753221110
Q ss_pred CCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHH
Q 003047 243 PSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLK 322 (854)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 322 (854)
|+ --++-.
T Consensus 200 -----------------~~-------------------------------------------------------~kyr~~ 207 (518)
T KOG1941|consen 200 -----------------WS-------------------------------------------------------LKYRAM 207 (518)
T ss_pred -----------------hh-------------------------------------------------------HHHHHH
Confidence 00 112222
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc----cCCCccHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIAR----GKDSSLALFLKSQLEYARRNHRKAIKLLLALSNR----TEMGISSM 394 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~----~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~----~dp~~~a~ 394 (854)
+.+.-+-.+-++|.+.+|.+..+.+.++.. -|-....+.-+|++|-.+|+.+.|+.-|+++... .|.-....
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~ 287 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVE 287 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 333334455677899999999998887762 1444566678899999999999999999998862 11101223
Q ss_pred HHHHHHHHHHHcCCHHH-----HHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHH
Q 003047 395 FNNNLGCIYYQLAKYHT-----SSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQK 468 (854)
Q Consensus 395 ~~nnLG~iy~~~g~~~e-----Ai~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~k 468 (854)
++..++.+.....-..+ |++.-++++++..++...- -....+..++.+|-.+|.-++=-..+.+
T Consensus 288 al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~----------~vlK~hcrla~iYrs~gl~d~~~~h~~r 356 (518)
T KOG1941|consen 288 ALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKL----------SVLKLHCRLASIYRSKGLQDELRAHVVR 356 (518)
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhH----------HHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 44444444444433444 7777778777744432110 0123455667777666665554444333
No 161
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.06 E-value=6.7e-05 Score=85.13 Aligned_cols=123 Identities=16% Similarity=0.104 Sum_probs=105.5
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCC
Q 003047 329 RFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAK 408 (854)
Q Consensus 329 ~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~ 408 (854)
+++...++++.|+.-++++...+ |+ ..+.++.++...++..+|++++.+++. ..|. ....+.-.+.++.+.++
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~--pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~-~~p~-d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERD--PE---VAVLLARVYLLMNEEVEAIRLLNEALK-ENPQ-DSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcC--Cc---HHHHHHHHHHhcCcHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHhcCC
Confidence 34556789999999999999998 76 667789999999999999999999999 6784 47778778999999999
Q ss_pred HHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCC
Q 003047 409 YHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYK 475 (854)
Q Consensus 409 ~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~ 475 (854)
++.|+...++|... .|.....|+.|+.+|...|++++|+..++ .+.+.|.
T Consensus 250 ~~lAL~iAk~av~l----------------sP~~f~~W~~La~~Yi~~~d~e~ALlaLN-s~Pm~~~ 299 (395)
T PF09295_consen 250 YELALEIAKKAVEL----------------SPSEFETWYQLAECYIQLGDFENALLALN-SCPMLTY 299 (395)
T ss_pred HHHHHHHHHHHHHh----------------CchhHHHHHHHHHHHHhcCCHHHHHHHHh-cCcCCCC
Confidence 99999999999998 45567899999999999999999997766 3444443
No 162
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.06 E-value=0.0021 Score=75.24 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=98.5
Q ss_pred hcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc--cCCCccHHHHHHHHHHHHHcCCHHH
Q 003047 334 TRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNR--TEMGISSMFNNNLGCIYYQLAKYHT 411 (854)
Q Consensus 334 ~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~--~dp~~~a~~~nnLG~iy~~~g~~~e 411 (854)
....+.|.+.++...... |+..-.++..|.++...|+.++|++.|++++.. .-+......+..+|.+|.-+.++++
T Consensus 246 ~~~~~~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 457788999999999999 999999999999999999999999999998861 1233345667789999999999999
Q ss_pred HHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCc-------HHHHHHHHHHHHh
Q 003047 412 SSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKP-------VLAARCFQKSSLV 472 (854)
Q Consensus 412 Ai~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~-------eeAl~~y~kAL~l 472 (854)
|..+|.+.++.. + -......|-.|.|+...|+. ++|.+.|.++-.+
T Consensus 324 A~~~f~~L~~~s-----~----------WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 324 AAEYFLRLLKES-----K----------WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHhcc-----c----------cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 999999998861 1 12355667889999999999 5555555554433
No 163
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.05 E-value=1.4e-05 Score=90.42 Aligned_cols=62 Identities=16% Similarity=0.093 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHHhcCHHHHHHHHHHhhh
Q 003047 322 KLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLA---LFLKSQLEYARRNHRKAIKLLLALSN 385 (854)
Q Consensus 322 ~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a---~~lla~ly~~~g~~~kAl~~l~kal~ 385 (854)
..++..+.+|...|++++|+..++++++++ |++..+ ++++|.+|..+|++++|+++|++++.
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 366778999999999999999999999999 999965 99999999999999999999999998
No 164
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=9.3e-05 Score=78.61 Aligned_cols=128 Identities=20% Similarity=0.224 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
..+|.++.+...+.+.+|++-++.+.+.. .-....+-+.+-+.++.+++--+-.+.++... + ..+...+|.||+
T Consensus 80 YrlY~AQSLY~A~i~ADALrV~~~~~D~~--~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--e--n~Ad~~in~gCl 153 (459)
T KOG4340|consen 80 YRLYQAQSLYKACIYADALRVAFLLLDNP--ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--E--NEADGQINLGCL 153 (459)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhcCCH--HHHHHHHHHHHHHhcccccCcchHHHHHhccC--C--Cccchhccchhe
Confidence 44556666667777787887766554432 11223445667788888888888777777543 1 346788999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLV 472 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l 472 (854)
.++-|+|++|++-|+.|++. ..-.+-+-||++.+.++.|+++.|+++..+++..
T Consensus 154 lykegqyEaAvqkFqaAlqv----------------sGyqpllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQV----------------SGYQPLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred eeccccHHHHHHHHHHHHhh----------------cCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 99999999999999999997 1223467789999999999999999887766543
No 165
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.03 E-value=0.0028 Score=62.09 Aligned_cols=206 Identities=20% Similarity=0.102 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCC
Q 003047 146 SVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDS 225 (854)
Q Consensus 146 ~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~ 225 (854)
...+...+..+...+++.+++..++..... ..........+..+..+...+++.+++. .+++........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---- 128 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALEL---ELLPNLAEALLNLGLLLEALGKYEEALE---LLEKALALDPDP---- 128 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhh---hhccchHHHHHHHHHHHHHHhhHHHHHH---HHHHHHcCCCCc----
Confidence 457778899999999999999999888873 1111122356667788888888888874 456554332000
Q ss_pred CCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchh
Q 003047 226 GSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNEL 305 (854)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (854)
T Consensus 129 -------------------------------------------------------------------------------- 128 (291)
T COG0457 129 -------------------------------------------------------------------------------- 128 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhcccchhHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 003047 306 SRTLVDRSISTVDLKLKLQLYKVR-FLLLTRNLKHAKREVKLAMNIARGK---DSSLALFLKSQLEYARRNHRKAIKLLL 381 (854)
Q Consensus 306 g~~~~~~~~~~~~~~~~l~l~K~~-lyl~~~~~~~A~~elk~al~~~~~P---~~~~a~~lla~ly~~~g~~~kAl~~l~ 381 (854)
.....+... +|...++++.|...+++++... | ......+..+..+...+++++|+..+.
T Consensus 129 ---------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 191 (291)
T COG0457 129 ---------------DLAEALLALGALYELGDYEEALELYEKALELD--PELNELAEALLALGALLEALGRYEEALELLE 191 (291)
T ss_pred ---------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCccchHHHHHHhhhHHHHhcCHHHHHHHHH
Confidence 001111222 7788999999999999998877 7 456677778888899999999999999
Q ss_pred HhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHH
Q 003047 382 ALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVL 461 (854)
Q Consensus 382 kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~ee 461 (854)
+++. ..+......+.+++..+...+++.+|+.++.+++... +.....++.++..+...+.+++
T Consensus 192 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~ 254 (291)
T COG0457 192 KALK-LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD----------------PDNAEALYNLALLLLELGRYEE 254 (291)
T ss_pred HHHh-hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC----------------cccHHHHhhHHHHHHHcCCHHH
Confidence 9999 4553135678889999999999999999999999982 2234667788888887778999
Q ss_pred HHHHHHHHHHhcCC
Q 003047 462 AARCFQKSSLVFYK 475 (854)
Q Consensus 462 Al~~y~kAL~l~P~ 475 (854)
+...+.+++...|.
T Consensus 255 ~~~~~~~~~~~~~~ 268 (291)
T COG0457 255 ALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHhCcc
Confidence 99999999999998
No 166
>PRK11906 transcriptional regulator; Provisional
Probab=98.02 E-value=0.00013 Score=82.94 Aligned_cols=113 Identities=16% Similarity=0.114 Sum_probs=97.7
Q ss_pred CCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhh
Q 003047 670 ENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCE 748 (854)
Q Consensus 670 g~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~ 748 (854)
.+-.+|++.++++++ .|.++.++..+|+ ++...++++.|+..|++++ .++
T Consensus 318 ~~~~~a~~~A~rAveld~~Da~a~~~~g~-----~~~~~~~~~~a~~~f~rA~--~L~---------------------- 368 (458)
T PRK11906 318 LAAQKALELLDYVSDITTVDGKILAIMGL-----ITGLSGQAKVSHILFEQAK--IHS---------------------- 368 (458)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHH-----HHHhhcchhhHHHHHHHHh--hcC----------------------
Confidence 345788999999998 8889999999988 5568899999999999999 332
Q ss_pred hccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHhcCC
Q 003047 749 ELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYV-DLMLGK 827 (854)
Q Consensus 749 ~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~-~L~~G~ 827 (854)
|. .+.+|+-.|.++...|+.++|.+++++++++.|....+..+..|+ .+--..
T Consensus 369 ----------------Pn----------~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~ 422 (458)
T PRK11906 369 ----------------TD----------IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP 422 (458)
T ss_pred ----------------Cc----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc
Confidence 32 577888899999999999999999999999999998888888888 777889
Q ss_pred HHHHHHHHHh
Q 003047 828 SQEALAKLKY 837 (854)
Q Consensus 828 ~~eA~~~lk~ 837 (854)
.++|+.++-+
T Consensus 423 ~~~~~~~~~~ 432 (458)
T PRK11906 423 LKNNIKLYYK 432 (458)
T ss_pred hhhhHHHHhh
Confidence 9999998854
No 167
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.99 E-value=0.072 Score=62.41 Aligned_cols=314 Identities=14% Similarity=0.073 Sum_probs=204.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-----------cC
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGK---DSSLALFLKSQLEYARRNHRKAIKLLLALSNR-----------TE 388 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P---~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~-----------~d 388 (854)
++.--+++|-..|+++.|..-+++++... .| +-...|..-|...+...+++.|+++.+++... .+
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~-y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVP-YKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCC-ccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 55556889999999999999999998876 12 22567788888899999999999999998762 01
Q ss_pred CC-----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHH
Q 003047 389 MG-----ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAA 463 (854)
Q Consensus 389 p~-----~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl 463 (854)
|. ....+|.....+--..|=++.--..|++.+.+ + -..+....|.|..+..-.-+++|+
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL----r------------iaTPqii~NyAmfLEeh~yfeesF 531 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL----R------------IATPQIIINYAMFLEEHKYFEESF 531 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH----h------------cCCHHHHHHHHHHHHhhHHHHHHH
Confidence 11 11233444455556667777777777777776 1 113466778888888888899999
Q ss_pred HHHHHHHHhc--CCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCC
Q 003047 464 RCFQKSSLVF--YKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDS 541 (854)
Q Consensus 464 ~~y~kAL~l~--P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~ 541 (854)
+.|++-+.++ |+-.++|.--..-.+. +.
T Consensus 532 k~YErgI~LFk~p~v~diW~tYLtkfi~--ry------------------------------------------------ 561 (835)
T KOG2047|consen 532 KAYERGISLFKWPNVYDIWNTYLTKFIK--RY------------------------------------------------ 561 (835)
T ss_pred HHHHcCCccCCCccHHHHHHHHHHHHHH--Hh------------------------------------------------
Confidence 9999999998 5778888776655552 11
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccC
Q 003047 542 SLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTAN 621 (854)
Q Consensus 542 ~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (854)
+..+++.|+.-|++||..+|.... |
T Consensus 562 -------gg~klEraRdLFEqaL~~Cpp~~a------------------------K------------------------ 586 (835)
T KOG2047|consen 562 -------GGTKLERARDLFEQALDGCPPEHA------------------------K------------------------ 586 (835)
T ss_pred -------cCCCHHHHHHHHHHHHhcCCHHHH------------------------H------------------------
Confidence 012578999999999999995221 0
Q ss_pred CCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 003047 622 GDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAA 701 (854)
Q Consensus 622 gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~~p~~~~~~~~la~lY~a 701 (854)
.++...|-.--+-|--..|+..++++-..-+ .+...-+=++|..
T Consensus 587 -----------------------------------tiyLlYA~lEEe~GLar~amsiyerat~~v~-~a~~l~myni~I~ 630 (835)
T KOG2047|consen 587 -----------------------------------TIYLLYAKLEEEHGLARHAMSIYERATSAVK-EAQRLDMYNIYIK 630 (835)
T ss_pred -----------------------------------HHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHH
Confidence 0111111122233556677788887665433 2344455566654
Q ss_pred HHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHH
Q 003047 702 EALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLY 781 (854)
Q Consensus 702 eAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~ 781 (854)
.|--..| +..-.+.|++++. .+ | .+ . ...+.
T Consensus 631 kaae~yG-v~~TR~iYekaIe-~L---------------------------------------p-----~~--~-~r~mc 661 (835)
T KOG2047|consen 631 KAAEIYG-VPRTREIYEKAIE-SL---------------------------------------P-----DS--K-AREMC 661 (835)
T ss_pred HHHHHhC-CcccHHHHHHHHH-hC---------------------------------------C-----hH--H-HHHHH
Confidence 4433333 2233445555552 11 1 10 1 34566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHhcCCCcc
Q 003047 782 VNIAAMFAMQGEFERAHHFVTQALSILPRS--TEATLTAIYVDLMLGKSQEALAKLKYCNHVRF 843 (854)
Q Consensus 782 ~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~--~~a~~l~~y~~L~~G~~~eA~~~lk~~~~~~~ 843 (854)
...|-+-+..|+.+.|..+|--.-.++|.. +..+..-=-.+++-||-+.-...||-.|.|..
T Consensus 662 lrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keMLRikRsvqa 725 (835)
T KOG2047|consen 662 LRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEMLRIKRSVQA 725 (835)
T ss_pred HHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 778888889999999999999988887654 34444444568899996665555554555443
No 168
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.98 E-value=8.5e-05 Score=78.95 Aligned_cols=109 Identities=13% Similarity=0.083 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhhccCCC--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccc
Q 003047 360 LFLKSQLEYARRNHRKAIKLLLALSNRTEMG--ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTF 437 (854)
Q Consensus 360 ~~lla~ly~~~g~~~kAl~~l~kal~~~dp~--~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~ 437 (854)
.|..|.-++..|+|.+|...|..-++. -|+ ..+.+++.||.+++.+|+|+.|...|..+.+..++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~------------ 210 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKK-YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK------------ 210 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC------------
Confidence 445556667889999999999998883 332 34567777999999999999999999999997331
Q ss_pred cCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHH
Q 003047 438 SQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLR 482 (854)
Q Consensus 438 ~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~ 482 (854)
.+.-+++++.+|.++..+|+.++|...|+++++-+|+.+.+-..
T Consensus 211 -s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 211 -SPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred -CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 24457899999999999999999999999999999998876443
No 169
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=0.005 Score=65.86 Aligned_cols=141 Identities=16% Similarity=0.107 Sum_probs=102.1
Q ss_pred HHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc---cCCC-----------------
Q 003047 331 LLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNR---TEMG----------------- 390 (854)
Q Consensus 331 yl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~---~dp~----------------- 390 (854)
..+.|++++|.+.++.+++.. .-++-.-+.++..+++.++|..|+++...++.+ ..|.
T Consensus 154 lykegqyEaAvqkFqaAlqvs--GyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgN 231 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVS--GYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGN 231 (459)
T ss_pred eeccccHHHHHHHHHHHHhhc--CCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccc
Confidence 335799999999999999998 788888899999999999999999999998873 2222
Q ss_pred -------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHH
Q 003047 391 -------ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAA 463 (854)
Q Consensus 391 -------~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl 463 (854)
.-..++|-...|+++.|+++.|.+ +|..+|.-. + .+-++-++.|++.. -..+++-+.+
T Consensus 232 t~~lh~Sal~eAfNLKaAIeyq~~n~eAA~e----aLtDmPPRa-E---------~elDPvTLHN~Al~-n~~~~p~~g~ 296 (459)
T KOG4340|consen 232 TLVLHQSALVEAFNLKAAIEYQLRNYEAAQE----ALTDMPPRA-E---------EELDPVTLHNQALM-NMDARPTEGF 296 (459)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhcccHHHHHH----HhhcCCCcc-c---------ccCCchhhhHHHHh-cccCCccccH
Confidence 112355556778888888877743 444432100 0 12234567777654 3456788889
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 464 RCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 464 ~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
+-++=.+.+.|--++.+-++...|.
T Consensus 297 ~KLqFLL~~nPfP~ETFANlLllyC 321 (459)
T KOG4340|consen 297 EKLQFLLQQNPFPPETFANLLLLYC 321 (459)
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHh
Confidence 8899999999966777777776666
No 170
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.96 E-value=0.0001 Score=83.57 Aligned_cols=105 Identities=19% Similarity=0.135 Sum_probs=91.2
Q ss_pred HHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHH
Q 003047 366 LEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLI 445 (854)
Q Consensus 366 ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~ 445 (854)
+....++++.|+++|++..+ .+|. +..-|+.+|..+++..+|+..+.++|.. .+.+.++
T Consensus 178 ~l~~t~~~~~ai~lle~L~~-~~pe----v~~~LA~v~l~~~~E~~AI~ll~~aL~~----------------~p~d~~L 236 (395)
T PF09295_consen 178 YLSLTQRYDEAIELLEKLRE-RDPE----VAVLLARVYLLMNEEVEAIRLLNEALKE----------------NPQDSEL 236 (395)
T ss_pred HHhhcccHHHHHHHHHHHHh-cCCc----HHHHHHHHHHhcCcHHHHHHHHHHHHHh----------------CCCCHHH
Confidence 33466899999999999998 6773 2334899999999999999999999987 3445788
Q ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 003047 446 TYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMAL 491 (854)
Q Consensus 446 ~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~ 491 (854)
+..-+..++..++++.|+.+.++++.+.|+....|+.|++||+..+
T Consensus 237 L~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~ 282 (395)
T PF09295_consen 237 LNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLG 282 (395)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcC
Confidence 8888999999999999999999999999999999999999999533
No 171
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.95 E-value=3.3e-05 Score=64.85 Aligned_cols=65 Identities=18% Similarity=0.144 Sum_probs=56.7
Q ss_pred HHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHH
Q 003047 332 LLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLG 400 (854)
Q Consensus 332 l~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG 400 (854)
+..|++++|++.+++++..+ |++..+++.+|.+|+..|++++|.+++++++. .+|+ ++.++.-++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~-~~~~-~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLK-QDPD-NPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG-GGTT-HHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCcC-HHHHHHHHh
Confidence 56899999999999999999 99999999999999999999999999999999 7884 465665444
No 172
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.00016 Score=77.79 Aligned_cols=50 Identities=20% Similarity=0.133 Sum_probs=47.7
Q ss_pred CCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 439 QDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 439 ~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
+|.+.+-|.-||-+|+.+|++..|...|.+|+++.|+++.+|.-+|+++.
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~ 201 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALY 201 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 46678999999999999999999999999999999999999999999988
No 173
>PRK11906 transcriptional regulator; Provisional
Probab=97.90 E-value=0.00017 Score=81.87 Aligned_cols=135 Identities=15% Similarity=0.052 Sum_probs=114.4
Q ss_pred HHHHHHHHHhc---CHHHHHHHHHHHH---HhcCCCCCHHHHHHHHHHHHHh---------cCHHHHHHHHHHhhhccCC
Q 003047 325 LYKVRFLLLTR---NLKHAKREVKLAM---NIARGKDSSLALFLKSQLEYAR---------RNHRKAIKLLLALSNRTEM 389 (854)
Q Consensus 325 l~K~~lyl~~~---~~~~A~~elk~al---~~~~~P~~~~a~~lla~ly~~~---------g~~~kAl~~l~kal~~~dp 389 (854)
+.+++-.+.++ ..+.|+..+.+++ .++ |+...++-.+|..++.. ....+|...-.+++. .+|
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ld--p~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve-ld~ 335 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQ--TLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD-ITT 335 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCC--cccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh-cCC
Confidence 33454444444 4567888999999 999 99999999999888865 345688888889998 788
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHH
Q 003047 390 GISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKS 469 (854)
Q Consensus 390 ~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kA 469 (854)
. ++.++..+|.++.-.++++.|+..|++|+.+ +|..+.+||..|......|+.++|+++++++
T Consensus 336 ~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L----------------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 336 V-DGKILAIMGLITGLSGQAKVSHILFEQAKIH----------------STDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred C-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhc----------------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4 6889999999999999999999999999999 4567899999999999999999999999999
Q ss_pred HHhcCCCHHH
Q 003047 470 SLVFYKQPLL 479 (854)
Q Consensus 470 L~l~P~~~~a 479 (854)
++++|....+
T Consensus 399 lrLsP~~~~~ 408 (458)
T PRK11906 399 LQLEPRRRKA 408 (458)
T ss_pred hccCchhhHH
Confidence 9999986543
No 174
>PRK15331 chaperone protein SicA; Provisional
Probab=97.89 E-value=0.00017 Score=71.61 Aligned_cols=87 Identities=8% Similarity=-0.136 Sum_probs=77.0
Q ss_pred HHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHH
Q 003047 332 LLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHT 411 (854)
Q Consensus 332 l~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~e 411 (854)
.++|++++|..-++-++..+ |.|+++++-+|-++..+++|++|+..|..+.. .++++ +...+.+|.+|..+|+..+
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~-l~~~d-p~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT-LLKND-YRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccCC-CCccchHHHHHHHhCCHHH
Confidence 37899999999999999999 99999999999999999999999999999887 33322 2234459999999999999
Q ss_pred HHHHHHHHHHh
Q 003047 412 SSVFLSKALSN 422 (854)
Q Consensus 412 Ai~~f~kAL~~ 422 (854)
|..+|..++..
T Consensus 124 A~~~f~~a~~~ 134 (165)
T PRK15331 124 ARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHhC
Confidence 99999999985
No 175
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.88 E-value=0.00016 Score=73.14 Aligned_cols=106 Identities=12% Similarity=-0.060 Sum_probs=89.1
Q ss_pred HHHHHHHHhcCHHHHHHHHHHhhhccCCC----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccc
Q 003047 362 LKSQLEYARRNHRKAIKLLLALSNRTEMG----ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTF 437 (854)
Q Consensus 362 lla~ly~~~g~~~kAl~~l~kal~~~dp~----~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~ 437 (854)
.-|+-+|.+|.|.+|..-|..+|. .-|. .....|.|.|.+..++++.+.||.-..||+++
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale-~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--------------- 163 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALE-SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--------------- 163 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHH-hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc---------------
Confidence 346899999999999999999998 4443 33567888999999999999999999999999
Q ss_pred cCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHH
Q 003047 438 SQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLA 484 (854)
Q Consensus 438 ~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La 484 (854)
.|....++...+.+|..+.+|++|++-|.++++++|..-.+.-..+
T Consensus 164 -~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 164 -NPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIA 209 (271)
T ss_pred -CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 2334567778899999999999999999999999999876554443
No 176
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.88 E-value=2.3e-05 Score=60.61 Aligned_cols=43 Identities=21% Similarity=0.243 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 003047 444 LITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAEC 486 (854)
Q Consensus 444 ~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~ 486 (854)
.+++.+|.+|...|++++|+++|+++++.+|+++.+|..||.+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 5788999999999999999999999999999999999999863
No 177
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.00026 Score=78.72 Aligned_cols=125 Identities=10% Similarity=-0.028 Sum_probs=97.2
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCCC---------------HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCc
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKDS---------------SLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGI 391 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~~---------------~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~ 391 (854)
++..|.+.|++..|...|++++..- +.. ...+++++..+..+++|.+|++.++++|. .+| .
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l--~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe-~~~-~ 289 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFL--EYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE-LDP-N 289 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHh--hccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh-cCC-C
Confidence 4668999999999999999988776 311 24678999999999999999999999999 788 4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHH-HHHHHHHH
Q 003047 392 SSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLA-ARCFQKSS 470 (854)
Q Consensus 392 ~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeA-l~~y~kAL 470 (854)
+..+++..|.+|..+|+|+.|+..|+||+++ .|.+..+-..+..+-.+..++.+. .+.|.+.+
T Consensus 290 N~KALyRrG~A~l~~~e~~~A~~df~ka~k~----------------~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 290 NVKALYRRGQALLALGEYDLARDDFQKALKL----------------EPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred chhHHHHHHHHHHhhccHHHHHHHHHHHHHh----------------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999998 233445555555555544444333 34444433
Q ss_pred H
Q 003047 471 L 471 (854)
Q Consensus 471 ~ 471 (854)
.
T Consensus 354 ~ 354 (397)
T KOG0543|consen 354 A 354 (397)
T ss_pred h
Confidence 3
No 178
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.83 E-value=0.00026 Score=67.28 Aligned_cols=92 Identities=22% Similarity=0.245 Sum_probs=75.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhH
Q 003047 699 YAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARG 778 (854)
Q Consensus 699 Y~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a 778 (854)
..|.++-.+|+.++|+.+|++++. ..+. ++. ..
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~--~gL~-----------------------------------~~~----------~~ 38 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALA--AGLS-----------------------------------GAD----------RR 38 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH--cCCC-----------------------------------chH----------HH
Confidence 345566689999999999999993 1100 011 46
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003047 779 TLYVNIAAMFAMQGEFERAHHFVTQALSILPR---STEATLTAIYVDLMLGKSQEALAKLKY 837 (854)
Q Consensus 779 ~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~---~~~a~~l~~y~~L~~G~~~eA~~~lk~ 837 (854)
.++++||.++...|++++|+..+++++.-.|+ +..+....+.++...|+.++|+..+..
T Consensus 39 ~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 39 RALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 78889999999999999999999999998898 666777778888899999999998865
No 179
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.77 E-value=0.00013 Score=62.07 Aligned_cols=64 Identities=9% Similarity=0.073 Sum_probs=54.2
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHH
Q 003047 329 RFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFN 396 (854)
Q Consensus 329 ~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~ 396 (854)
.+|+..+++++|++.+++++.++ |+++..++.+|.+++..|++++|++.|++++. ..|+ .+.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~-~~p~-~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALE-LSPD-DPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHH-HCCC-cHHHH
Confidence 57788899999999999999999 99999999999999999999999999999998 6774 34443
No 180
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.76 E-value=0.00089 Score=73.03 Aligned_cols=125 Identities=14% Similarity=0.089 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhc----cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccc
Q 003047 358 LALFLKSQLEYARRNHRKAIKLLLALSNR----TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLK 433 (854)
Q Consensus 358 ~a~~lla~ly~~~g~~~kAl~~l~kal~~----~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~ 433 (854)
..+..+|+.+.-++-++++++.|+++++. .||-..-.++..||..|-+++++++|+.+..||+.+...+.-.+-
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~-- 200 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDW-- 200 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCch--
Confidence 45567899999999999999999999983 455455568889999999999999999999999999665431110
Q ss_pred cccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc--CCCH----HHHHHHHHHHH
Q 003047 434 LLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVF--YKQP----LLWLRLAECCL 488 (854)
Q Consensus 434 ~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~--P~~~----~aw~~La~~~i 488 (854)
..--+..++|.++++|-.+|+.-+|.++.+++.++. ..+- +...-+|.+|.
T Consensus 201 ----~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 201 ----SLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred ----hHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 001245688999999999999999999999998765 3333 33444555555
No 181
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.67 E-value=0.0035 Score=61.41 Aligned_cols=145 Identities=21% Similarity=0.142 Sum_probs=119.8
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH-HHHHhcCHHHHHHHHHHhhhccCC--CccHHHHHHHHH
Q 003047 325 LYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQ-LEYARRNHRKAIKLLLALSNRTEM--GISSMFNNNLGC 401 (854)
Q Consensus 325 l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~-ly~~~g~~~kAl~~l~kal~~~dp--~~~a~~~nnLG~ 401 (854)
.....++...+++..+.+.++.++... +++.......+. ++...|++++|+..|.+++. ..| ......+..++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~ 175 (291)
T COG0457 99 LNLGLLLEALGKYEEALELLEKALALD--PDPDLAEALLALGALYELGDYEEALELYEKALE-LDPELNELAEALLALGA 175 (291)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHcCC--CCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhh
Confidence 334566677788899999999999998 887666667777 89999999999999999987 565 234566667788
Q ss_pred HHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCc-cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHH
Q 003047 402 IYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDK-SLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLW 480 (854)
Q Consensus 402 iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~-~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw 480 (854)
.+...+++.+|+..+.+++... +. ....+.+++.++...++++.|...+.+++...|.....+
T Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 239 (291)
T COG0457 176 LLEALGRYEEALELLEKALKLN----------------PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEAL 239 (291)
T ss_pred HHHHhcCHHHHHHHHHHHHhhC----------------cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHH
Confidence 8889999999999999999982 22 357788999999999999999999999999999966667
Q ss_pred HHHHHHHH
Q 003047 481 LRLAECCL 488 (854)
Q Consensus 481 ~~La~~~i 488 (854)
..++..+.
T Consensus 240 ~~~~~~~~ 247 (291)
T COG0457 240 YNLALLLL 247 (291)
T ss_pred hhHHHHHH
Confidence 77766554
No 182
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.65 E-value=0.0054 Score=64.96 Aligned_cols=181 Identities=15% Similarity=0.033 Sum_probs=127.2
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCC
Q 003047 145 VSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVD 224 (854)
Q Consensus 145 ~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~ 224 (854)
-+..||+.|..-.+.|+|++|++.|+.+.. ..|..+. ..++.+.++-.+...++|+.|+..+++|-+..+-+
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~-~~p~s~~-~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~------ 104 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDS-RHPFSPY-SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTH------ 104 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCcc-cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC------
Confidence 455999999999999999999999999987 4455554 37789999999999999999998888777766433
Q ss_pred CCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccch
Q 003047 225 SGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNE 304 (854)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (854)
++. +.. .+.. .+.+... |+..
T Consensus 105 ---------------------~n~------dY~---------~Ylk----gLs~~~~-------i~~~------------ 125 (254)
T COG4105 105 ---------------------PNA------DYA---------YYLK----GLSYFFQ-------IDDV------------ 125 (254)
T ss_pred ---------------------CCh------hHH---------HHHH----HHHHhcc-------CCcc------------
Confidence 111 111 0100 0000000 0000
Q ss_pred hhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHH-----------------HHHHHHHH
Q 003047 305 LSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLA-----------------LFLKSQLE 367 (854)
Q Consensus 305 ~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a-----------------~~lla~ly 367 (854)
++ -+.-..+|+..++.++... |+..-+ =...|..|
T Consensus 126 ------~r--------------------Dq~~~~~A~~~f~~~i~ry--PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY 177 (254)
T COG4105 126 ------TR--------------------DQSAARAAFAAFKELVQRY--PNSRYAPDAKARIVKLNDALAGHEMAIARYY 177 (254)
T ss_pred ------cc--------------------CHHHHHHHHHHHHHHHHHC--CCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 0122356888999999999 977321 14579999
Q ss_pred HHhcCHHHHHHHHHHhhhccCCC--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003047 368 YARRNHRKAIKLLLALSNRTEMG--ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 368 ~~~g~~~kAl~~l~kal~~~dp~--~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
..+|.+--|+.-++.+++. -|+ ....++..|...|..+|-.++|.. ..+.|..
T Consensus 178 ~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~-~~~vl~~ 232 (254)
T COG4105 178 LKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKK-TAKVLGA 232 (254)
T ss_pred HHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHH-HHHHHHh
Confidence 9999999999999999983 221 345677779999999999999965 4566664
No 183
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.62 E-value=0.00032 Score=70.25 Aligned_cols=62 Identities=16% Similarity=0.005 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCC-----------cHHHHHHHHHHHHhcCCCH
Q 003047 409 YHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGK-----------PVLAARCFQKSSLVFYKQP 477 (854)
Q Consensus 409 ~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk-----------~eeAl~~y~kAL~l~P~~~ 477 (854)
+++|+.-|++||.+ .|....+++++|++|...+. |++|.+||++|...+|++.
T Consensus 51 iedAisK~eeAL~I----------------~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne 114 (186)
T PF06552_consen 51 IEDAISKFEEALKI----------------NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE 114 (186)
T ss_dssp HHHHHHHHHHHHHH-----------------TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred HHHHHHHHHHHHhc----------------CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 46777888888887 45668999999999997765 7889999999999999999
Q ss_pred HHHHHHHHH
Q 003047 478 LLWLRLAEC 486 (854)
Q Consensus 478 ~aw~~La~~ 486 (854)
..+..|-.+
T Consensus 115 ~Y~ksLe~~ 123 (186)
T PF06552_consen 115 LYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887777644
No 184
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.60 E-value=0.11 Score=63.16 Aligned_cols=127 Identities=17% Similarity=0.115 Sum_probs=104.8
Q ss_pred HHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHH
Q 003047 332 LLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHT 411 (854)
Q Consensus 332 l~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~e 411 (854)
+..+++++|+....+++..+ |+-..+..++|.++.+.|+.++|..+++..-. ..+ +....+--+-.+|..+|++++
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~-~~~-~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNALYAKVLKALSLFRLGKGDEALKLLEALYG-LKG-TDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHhcCchhHHHHHhhhcc-CCC-CchHHHHHHHHHHHHHhhhhH
Confidence 35689999999999999999 99999999999999999999999987776554 333 345566678899999999999
Q ss_pred HHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHH
Q 003047 412 SSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLL 479 (854)
Q Consensus 412 Ai~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~a 479 (854)
|..+|+++++. +|..+.++.+=.+|.+-+.|.+--+.=.+.-+..|+++..
T Consensus 96 ~~~~Ye~~~~~-----------------~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yy 146 (932)
T KOG2053|consen 96 AVHLYERANQK-----------------YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYY 146 (932)
T ss_pred HHHHHHHHHhh-----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccch
Confidence 99999999997 2347788888899999998877555544555578888765
No 185
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.59 E-value=0.0016 Score=65.41 Aligned_cols=124 Identities=19% Similarity=0.125 Sum_probs=94.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHc--CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhh
Q 003047 659 LANLAYVELEMENPVKALAAARSLLE--LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDC 736 (854)
Q Consensus 659 l~~la~v~l~lg~~~~Al~~~~~lL~--~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~ 736 (854)
.+.||..+.++|++.+|..+|.+++. ..+++..+.-+ |.|.+..+++.+|...|+.... .+.
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLgl-----A~Aqfa~~~~A~a~~tLe~l~e--~~p--------- 155 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGL-----AQAQFAIQEFAAAQQTLEDLME--YNP--------- 155 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHH-----HHHHHhhccHHHHHHHHHHHhh--cCC---------
Confidence 45789999999999999999999997 44555555444 4589999999999999998883 210
Q ss_pred hhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 003047 737 EQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATL 816 (854)
Q Consensus 737 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~ 816 (854)
+.+ +| ..+.-+|.++..+|.+++|+..|+.+++.-|+.. +..
T Consensus 156 --------------------a~r----~p-------------d~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~-ar~ 197 (251)
T COG4700 156 --------------------AFR----SP-------------DGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ-ARI 197 (251)
T ss_pred --------------------ccC----CC-------------CchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH-HHH
Confidence 000 12 2234589999999999999999999999887763 444
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 003047 817 TAIYVDLMLGKSQEALAKLK 836 (854)
Q Consensus 817 l~~y~~L~~G~~~eA~~~lk 836 (854)
..+-.+.++|+.++|..-+.
T Consensus 198 ~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 198 YYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHHHHHhcchhHHHHHHH
Confidence 45555679999998876553
No 186
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.53 E-value=0.00012 Score=52.92 Aligned_cols=34 Identities=21% Similarity=0.172 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC
Q 003047 443 LLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQ 476 (854)
Q Consensus 443 ~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~ 476 (854)
+.+|+++|.+|+.+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3689999999999999999999999999999974
No 187
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.52 E-value=0.42 Score=57.58 Aligned_cols=45 Identities=16% Similarity=0.056 Sum_probs=34.9
Q ss_pred HHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHH
Q 003047 151 NIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVL 208 (854)
Q Consensus 151 n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l 208 (854)
..|++-..+|..++|..+|.+--+ +-+|-.+|...|+.++|.++-
T Consensus 805 kvAvLAieLgMlEeA~~lYr~ckR-------------~DLlNKlyQs~g~w~eA~eiA 849 (1416)
T KOG3617|consen 805 KVAVLAIELGMLEEALILYRQCKR-------------YDLLNKLYQSQGMWSEAFEIA 849 (1416)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH-------------HHHHHHHHHhcccHHHHHHHH
Confidence 568888899999999999965433 344567888899999998654
No 188
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=0.0068 Score=64.20 Aligned_cols=142 Identities=14% Similarity=0.056 Sum_probs=106.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHH
Q 003047 324 QLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIY 403 (854)
Q Consensus 324 ~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy 403 (854)
...-+-+|+.-+++++|.+.+.....+ ++..+.-+++.+..+.+-|.+.+++... .+. ...+..|+..+
T Consensus 111 ~l~aa~i~~~~~~~deAl~~~~~~~~l-------E~~Al~VqI~lk~~r~d~A~~~lk~mq~-ide---d~tLtQLA~aw 179 (299)
T KOG3081|consen 111 LLLAAIIYMHDGDFDEALKALHLGENL-------EAAALNVQILLKMHRFDLAEKELKKMQQ-IDE---DATLTQLAQAW 179 (299)
T ss_pred HHHhhHHhhcCCChHHHHHHHhccchH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHc-cch---HHHHHHHHHHH
Confidence 334566788888888888887764444 4777778888888888888888888877 443 24556566555
Q ss_pred HH----cCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHH
Q 003047 404 YQ----LAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLL 479 (854)
Q Consensus 404 ~~----~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~a 479 (854)
.+ .+++..|..+|+..=.- .++.+.++...+.|.+.+|+|++|...++.+|.-++++|..
T Consensus 180 v~la~ggek~qdAfyifeE~s~k----------------~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet 243 (299)
T KOG3081|consen 180 VKLATGGEKIQDAFYIFEELSEK----------------TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET 243 (299)
T ss_pred HHHhccchhhhhHHHHHHHHhcc----------------cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence 43 23566666666664332 34567788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 003047 480 WLRLAECCLMALE 492 (854)
Q Consensus 480 w~~La~~~i~~~~ 492 (854)
..++.-|....++
T Consensus 244 L~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 244 LANLIVLALHLGK 256 (299)
T ss_pred HHHHHHHHHHhCC
Confidence 9999988775333
No 189
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.47 E-value=0.24 Score=56.40 Aligned_cols=145 Identities=17% Similarity=0.119 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH--HHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHH
Q 003047 322 KLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQ--LEYARRNHRKAIKLLLALSNRTEMGISSMFNNNL 399 (854)
Q Consensus 322 ~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~--ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnL 399 (854)
++++.-++.-+.+.++..|.+.+..++... |.+-- .+|. +..+.++++.+-++|++.+. -.| .+..+|...
T Consensus 405 KiWlmyA~feIRq~~l~~ARkiLG~AIG~c--PK~Kl---Fk~YIelElqL~efDRcRkLYEkfle-~~P-e~c~~W~ky 477 (677)
T KOG1915|consen 405 KIWLMYAQFEIRQLNLTGARKILGNAIGKC--PKDKL---FKGYIELELQLREFDRCRKLYEKFLE-FSP-ENCYAWSKY 477 (677)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhccC--CchhH---HHHHHHHHHHHhhHHHHHHHHHHHHh-cCh-HhhHHHHHH
Confidence 477777999999999999999999999999 87643 3343 45689999999999999999 688 467899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHH
Q 003047 400 GCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLL 479 (854)
Q Consensus 400 G~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~a 479 (854)
|.+-..+|+.+.|-..|.-|+.. |.+ +....+|-.--..-...|.++.|...|++.|+..+..+ +
T Consensus 478 aElE~~LgdtdRaRaifelAi~q-p~l-------------dmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-v 542 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQ-PAL-------------DMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-V 542 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcC-ccc-------------ccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-H
Confidence 99999999999999999999886 000 11123333334445567889999999999999998877 9
Q ss_pred HHHHHHHHH
Q 003047 480 WLRLAECCL 488 (854)
Q Consensus 480 w~~La~~~i 488 (854)
|...|..-.
T Consensus 543 WisFA~fe~ 551 (677)
T KOG1915|consen 543 WISFAKFEA 551 (677)
T ss_pred HHhHHHHhc
Confidence 999997655
No 190
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.40 E-value=0.00066 Score=69.57 Aligned_cols=111 Identities=18% Similarity=0.084 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccc
Q 003047 358 LALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTF 437 (854)
Q Consensus 358 ~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~ 437 (854)
.-+|..|.+|...|-..-|---|.+++. ..|. -+.++|-||.++...|+++.|.+.|.-.++++
T Consensus 66 ~l~fERGvlYDSlGL~~LAR~DftQaLa-i~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD-------------- 129 (297)
T COG4785 66 QLLFERGVLYDSLGLRALARNDFSQALA-IRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-------------- 129 (297)
T ss_pred HHHHHhcchhhhhhHHHHHhhhhhhhhh-cCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccC--------------
Confidence 3457788999999988888888999998 7894 68899999999999999999999999999984
Q ss_pred cCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHH--HHHHHHHH
Q 003047 438 SQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPL--LWLRLAEC 486 (854)
Q Consensus 438 ~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~--aw~~La~~ 486 (854)
|....+..|.|..++--|+|.-|.+-|.+--+-+|++|. .|+.|-+.
T Consensus 130 --p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~ 178 (297)
T COG4785 130 --PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQ 178 (297)
T ss_pred --CcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 334578889999999999999999999999999999985 58877753
No 191
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.39 E-value=0.0017 Score=69.21 Aligned_cols=97 Identities=13% Similarity=0.126 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHhhhc--cCCCcc
Q 003047 318 DLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDS---SLALFLKSQLEYARRNHRKAIKLLLALSNR--TEMGIS 392 (854)
Q Consensus 318 ~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~---~~a~~lla~ly~~~g~~~kAl~~l~kal~~--~dp~~~ 392 (854)
.|..++.++ +.|++..|...+..-++.. |+. +.++|-+|..++.+|+|+.|..+|..+.+. ..| ..
T Consensus 144 ~Y~~A~~~~------ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~-KA 214 (262)
T COG1729 144 LYNAALDLY------KSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSP-KA 214 (262)
T ss_pred HHHHHHHHH------HcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCC-CC
Confidence 455555444 7899999999999999999 987 579999999999999999999999999983 233 45
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 003047 393 SMFNNNLGCIYYQLAKYHTSSVFLSKALSNS 423 (854)
Q Consensus 393 a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~ 423 (854)
++.++.||.+..++|+.++|...|+++++..
T Consensus 215 pdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 215 PDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 7889999999999999999999999999973
No 192
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.36 E-value=0.00035 Score=50.24 Aligned_cols=34 Identities=21% Similarity=0.124 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC
Q 003047 443 LLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQ 476 (854)
Q Consensus 443 ~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~ 476 (854)
+++|+.+|.+++.+|++++|+++|++++.++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999985
No 193
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00037 Score=72.29 Aligned_cols=107 Identities=12% Similarity=0.035 Sum_probs=90.1
Q ss_pred HHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCc
Q 003047 362 LKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDK 441 (854)
Q Consensus 362 lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~ 441 (854)
..|+-++...+|..|+.+|.+++. ..| .++.+|-|.+.+|+++++++....-.++|+++++ .
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~-~nP-~~~~Y~tnralchlk~~~~~~v~~dcrralql~~----------------N 76 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAIC-INP-TVASYYTNRALCHLKLKHWEPVEEDCRRALQLDP----------------N 76 (284)
T ss_pred hccccccchhhhchHHHHHHHHHh-cCC-CcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcCh----------------H
Confidence 356778888999999999999999 788 5678899999999999999999999999999943 3
Q ss_pred cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC-----HHHHHHHHHH
Q 003047 442 SLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQ-----PLLWLRLAEC 486 (854)
Q Consensus 442 ~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~-----~~aw~~La~~ 486 (854)
....+|-+|.+++....|++|+.+++++..+.... ..+|..|-.+
T Consensus 77 ~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 77 LVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 45788899999999999999999999997766433 3456665543
No 194
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.34 E-value=0.024 Score=71.09 Aligned_cols=210 Identities=13% Similarity=0.085 Sum_probs=148.4
Q ss_pred chhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhccccc
Q 003047 142 EFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVN 221 (854)
Q Consensus 142 ~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~ 221 (854)
+|..+..|.+.=.-...+++.++|-++.|+++..+...++..-..+|..++++-..-|. ...+..-||++-...
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~---eesl~kVFeRAcqyc--- 1527 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGT---EESLKKVFERACQYC--- 1527 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCc---HHHHHHHHHHHHHhc---
Confidence 67788899999888999999999999999999977555444333344444444444442 223345667665432
Q ss_pred CCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCc
Q 003047 222 QVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLS 301 (854)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (854)
+ .
T Consensus 1528 --d-------------------------------~--------------------------------------------- 1529 (1710)
T KOG1070|consen 1528 --D-------------------------------A--------------------------------------------- 1529 (1710)
T ss_pred --c-------------------------------h---------------------------------------------
Confidence 0 0
Q ss_pred cchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 003047 302 SNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLL 381 (854)
Q Consensus 302 ~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~ 381 (854)
+ ..+..-..+|....++++|.+-++..++.+ -+....|.+.|..++.+++-++|-.++.
T Consensus 1530 -----------------~--~V~~~L~~iy~k~ek~~~A~ell~~m~KKF--~q~~~vW~~y~~fLl~~ne~~aa~~lL~ 1588 (1710)
T KOG1070|consen 1530 -----------------Y--TVHLKLLGIYEKSEKNDEADELLRLMLKKF--GQTRKVWIMYADFLLRQNEAEAARELLK 1588 (1710)
T ss_pred -----------------H--HHHHHHHHHHHHhhcchhHHHHHHHHHHHh--cchhhHHHHHHHHHhcccHHHHHHHHHH
Confidence 0 022223567777788888888888888888 6777888888888888888888888888
Q ss_pred HhhhccCCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcH
Q 003047 382 ALSNRTEMG-ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPV 460 (854)
Q Consensus 382 kal~~~dp~-~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~e 460 (854)
+++. .-|. ....+.--.+..-++.|+.+.+-..|+-.|.. .|.+..+|.-....-+..|..+
T Consensus 1589 rAL~-~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a----------------yPKRtDlW~VYid~eik~~~~~ 1651 (1710)
T KOG1070|consen 1589 RALK-SLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA----------------YPKRTDLWSVYIDMEIKHGDIK 1651 (1710)
T ss_pred HHHh-hcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh----------------CccchhHHHHHHHHHHccCCHH
Confidence 8887 4442 23455555677778888888888888887776 4556677776677777777788
Q ss_pred HHHHHHHHHHHhc
Q 003047 461 LAARCFQKSSLVF 473 (854)
Q Consensus 461 eAl~~y~kAL~l~ 473 (854)
.+...|++++.+.
T Consensus 1652 ~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1652 YVRDLFERVIELK 1664 (1710)
T ss_pred HHHHHHHHHHhcC
Confidence 8888888887765
No 195
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.33 E-value=0.039 Score=58.57 Aligned_cols=198 Identities=16% Similarity=0.075 Sum_probs=133.3
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHH
Q 003047 389 MGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQK 468 (854)
Q Consensus 389 p~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~k 468 (854)
+..++..+++-|....+.|++++|+.+|++.....+- .+-...++..++-++++.++|++|+...++
T Consensus 30 ~~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~-------------s~~~~qa~l~l~yA~Yk~~~y~~A~~~~dr 96 (254)
T COG4105 30 YNLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPF-------------SPYSEQAQLDLAYAYYKNGEYDLALAYIDR 96 (254)
T ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------------CcccHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 3345788899999999999999999999998765210 122357888999999999999999999999
Q ss_pred HHHhcCCCHHH---HHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCC
Q 003047 469 SSLVFYKQPLL---WLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGS 545 (854)
Q Consensus 469 AL~l~P~~~~a---w~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~ 545 (854)
.+.++|.++.+ .+-.|.+.. .. - .. .-.+
T Consensus 97 Fi~lyP~~~n~dY~~YlkgLs~~---~~----i-------------------------~~-----~~rD----------- 128 (254)
T COG4105 97 FIRLYPTHPNADYAYYLKGLSYF---FQ----I-------------------------DD-----VTRD----------- 128 (254)
T ss_pred HHHhCCCCCChhHHHHHHHHHHh---cc----C-------------------------Cc-----cccC-----------
Confidence 99999998764 555565544 11 0 00 0001
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcc
Q 003047 546 DGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAK 625 (854)
Q Consensus 546 ~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~ 625 (854)
......|...|+.-+.-.|+-.-+. |.+
T Consensus 129 ----q~~~~~A~~~f~~~i~ryPnS~Ya~------------------------------------------------dA~ 156 (254)
T COG4105 129 ----QSAARAAFAAFKELVQRYPNSRYAP------------------------------------------------DAK 156 (254)
T ss_pred ----HHHHHHHHHHHHHHHHHCCCCcchh------------------------------------------------hHH
Confidence 0123668888888888888744210 000
Q ss_pred cccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHH
Q 003047 626 DQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEAL 704 (854)
Q Consensus 626 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl 704 (854)
. .+..+. +..... =+..|..|++.|.|..|+..++++++ .|+.+.+.-.|. ++.||+
T Consensus 157 ~----~i~~~~------------d~LA~~----Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~--~l~eaY 214 (254)
T COG4105 157 A----RIVKLN------------DALAGH----EMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALA--RLEEAY 214 (254)
T ss_pred H----HHHHHH------------HHHHHH----HHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHH--HHHHHH
Confidence 0 001110 000111 12447789999999999999999998 555655555554 456688
Q ss_pred HhcCCHHHHHHHHHhhh
Q 003047 705 CLLNRPKEAAEHFSMYL 721 (854)
Q Consensus 705 ~~lgr~~eAl~~l~~~l 721 (854)
..+|-.++|-..-.-.-
T Consensus 215 ~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 215 YALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHhCChHHHHHHHHHHH
Confidence 99999999877655443
No 196
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.33 E-value=0.0022 Score=65.82 Aligned_cols=165 Identities=15% Similarity=0.039 Sum_probs=128.9
Q ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHH
Q 003047 317 VDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFN 396 (854)
Q Consensus 317 ~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~ 396 (854)
.+-+..+++.|+-+|-..|-..-|.-.+..++.+. |+-+++...+|..+...|+|+.|.+.|+.+++ .||. ...++
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~--P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E-LDp~-y~Ya~ 136 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE-LDPT-YNYAH 136 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcC--CCcHHHHHHHHHHHHhcccchHHHHHhhhHhc-cCCc-chHHH
Confidence 44566789999999999999999999999999999 99999999999999999999999999999999 8995 56788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhchh--------------cc-------------cCC----c----------cc--
Q 003047 397 NNLGCIYYQLAKYHTSSVFLSKALSNSAS--------------LR-------------KDK----P----------LK-- 433 (854)
Q Consensus 397 nnLG~iy~~~g~~~eAi~~f~kAL~~~~~--------------l~-------------~~~----~----------l~-- 433 (854)
.|.|..++--|+|..|..-|.+--+.+++ +. .-+ + +.
T Consensus 137 lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e 216 (297)
T COG4785 137 LNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEE 216 (297)
T ss_pred hccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHH
Confidence 89999999999999999999888776432 00 000 0 00
Q ss_pred -----cccccCC------ccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcC-CCHHHHHHHHH
Q 003047 434 -----LLTFSQD------KSLLITYNCGLQYLACGKPVLAARCFQKSSLVFY-KQPLLWLRLAE 485 (854)
Q Consensus 434 -----~~~~~~~------~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P-~~~~aw~~La~ 485 (854)
......+ .-.+++|.+|..++..|+.++|...|+-++.-.- +..+..+.+-+
T Consensus 217 ~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVynfVE~RyA~~E 280 (297)
T COG4785 217 TLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYNFVEHRYALLE 280 (297)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 0111111 1256889999999999999999999998887553 33333444333
No 197
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.28 E-value=0.00039 Score=50.25 Aligned_cols=34 Identities=24% Similarity=0.497 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003047 778 GTLYVNIAAMFAMQGEFERAHHFVTQALSILPRS 811 (854)
Q Consensus 778 a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~ 811 (854)
|.+|+++|.++..+|++++|+.++++|++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4678999999999999999999999999999974
No 198
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.22 E-value=0.0089 Score=60.76 Aligned_cols=125 Identities=13% Similarity=0.037 Sum_probs=95.2
Q ss_pred HhcCHHHHHHHHHHHHHhcCCCCCHHHH---HHHHHHHHHhcCHHHHHHHHHHhhhc-cCCCccHHHHHHHHHHHHHcCC
Q 003047 333 LTRNLKHAKREVKLAMNIARGKDSSLAL---FLKSQLEYARRNHRKAIKLLLALSNR-TEMGISSMFNNNLGCIYYQLAK 408 (854)
Q Consensus 333 ~~~~~~~A~~elk~al~~~~~P~~~~a~---~lla~ly~~~g~~~kAl~~l~kal~~-~dp~~~a~~~nnLG~iy~~~g~ 408 (854)
+.+.. +...++.+.+..+ |....+. +.+|..+...+++++|+..++.++.. .|......+-.+|+.+..++|+
T Consensus 65 ~ak~~-~~~~~~ekf~~~n--~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k 141 (207)
T COG2976 65 QAKKP-KSIAAAEKFVQAN--GKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKK 141 (207)
T ss_pred hcCCc-hhHHHHHHHHhhc--cccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhh
Confidence 34444 7888888888888 7776554 57899999999999999999999962 2333345566678999999999
Q ss_pred HHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCH
Q 003047 409 YHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQP 477 (854)
Q Consensus 409 ~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~ 477 (854)
+++|+..+...-.. .-......-.|.+++..|+.++|+..|.+++..+++.+
T Consensus 142 ~D~AL~~L~t~~~~-----------------~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 142 ADAALKTLDTIKEE-----------------SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHHHHhccccc-----------------cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 99998876653221 01123344679999999999999999999999986554
No 199
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.21 E-value=0.11 Score=65.60 Aligned_cols=212 Identities=15% Similarity=0.120 Sum_probs=163.9
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCC------ccHHHHHHHHHHHHHcCCHHHHH
Q 003047 340 AKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMG------ISSMFNNNLGCIYYQLAKYHTSS 413 (854)
Q Consensus 340 A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~------~~a~~~nnLG~iy~~~g~~~eAi 413 (854)
-.+++.+++... |+.+-.|..-=..+.+.++.++|-++.+++|+..++. +.-.+|.||=..| |.-+.-.
T Consensus 1443 saeDferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl~ 1517 (1710)
T KOG1070|consen 1443 SAEDFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESLK 1517 (1710)
T ss_pred CHHHHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHHH
Confidence 457888899999 9999999887788889999999999999999853322 1122333343333 5667778
Q ss_pred HHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Q 003047 414 VFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEK 493 (854)
Q Consensus 414 ~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~ 493 (854)
+.|++|-+.+ + ...++..|..+|...+++++|.+.|+..++-+.+...+|...|..++ ++
T Consensus 1518 kVFeRAcqyc----------------d-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl---~~ 1577 (1710)
T KOG1070|consen 1518 KVFERACQYC----------------D-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLL---RQ 1577 (1710)
T ss_pred HHHHHHHHhc----------------c-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHh---cc
Confidence 8888888872 2 24677889999999999999999999999999999999999999888 32
Q ss_pred cccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCccc
Q 003047 494 GLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLN 573 (854)
Q Consensus 494 ~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~ 573 (854)
. + -+.|+.-+.+||.-.|....
T Consensus 1578 n--e-------------------------------------------------------~~aa~~lL~rAL~~lPk~eH- 1599 (1710)
T KOG1070|consen 1578 N--E-------------------------------------------------------AEAARELLKRALKSLPKQEH- 1599 (1710)
T ss_pred c--H-------------------------------------------------------HHHHHHHHHHHHhhcchhhh-
Confidence 0 0 14589999999999999321
Q ss_pred ccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHH
Q 003047 574 YSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQM 653 (854)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 653 (854)
-+++
T Consensus 1600 -----------------------------------------------------------v~~I----------------- 1603 (1710)
T KOG1070|consen 1600 -----------------------------------------------------------VEFI----------------- 1603 (1710)
T ss_pred -----------------------------------------------------------HHHH-----------------
Confidence 0111
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 003047 654 IKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYL 721 (854)
Q Consensus 654 l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l 721 (854)
...|-.-++.||+..+...+..+|. .|.-.+.|.-+.. .-+..|..+.+...|+|.+
T Consensus 1604 ------skfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid-----~eik~~~~~~vR~lfeRvi 1661 (1710)
T KOG1070|consen 1604 ------SKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYID-----MEIKHGDIKYVRDLFERVI 1661 (1710)
T ss_pred ------HHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHH-----HHHccCCHHHHHHHHHHHH
Confidence 1224457789999999999999886 8888888865554 3457899999999999999
No 200
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.17 E-value=0.00083 Score=51.85 Aligned_cols=41 Identities=20% Similarity=0.321 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 003047 779 TLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAI 819 (854)
Q Consensus 779 ~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~ 819 (854)
.+++.||.+|..+|++++|+++|+++++..|+++.++..++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 46788999999999999999999999999999998887665
No 201
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.17 E-value=0.00091 Score=67.77 Aligned_cols=101 Identities=23% Similarity=0.153 Sum_probs=84.9
Q ss_pred HHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHH
Q 003047 703 ALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYV 782 (854)
Q Consensus 703 Al~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~ 782 (854)
-++..|.+++|..-|..++. . +|..++.-+.++|.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale--~-------------------------------------------cp~~~~e~rsIly~ 138 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALE--S-------------------------------------------CPSTSTEERSILYS 138 (271)
T ss_pred HhhhcccHHHHHHHHHHHHH--h-------------------------------------------CccccHHHHHHHHh
Confidence 35567999999999999993 1 12223344899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCccccccccc
Q 003047 783 NIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKYCNHVRFLPSGLQL 850 (854)
Q Consensus 783 NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~~~~~~~~~~~~~~ 850 (854)
|-|.++..++.++.|+.-..+|+++.|.+..++.-++..+-++.++++|+.-+++.. ..+|...+.
T Consensus 139 Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~--E~dPs~~ea 204 (271)
T KOG4234|consen 139 NRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKIL--ESDPSRREA 204 (271)
T ss_pred hhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHH--HhCcchHHH
Confidence 999999999999999999999999999999999999999999999999999999955 556655443
No 202
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.13 E-value=0.011 Score=56.24 Aligned_cols=103 Identities=17% Similarity=0.015 Sum_probs=75.7
Q ss_pred HHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCc
Q 003047 362 LKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDK 441 (854)
Q Consensus 362 lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~ 441 (854)
++|...-.-|+.+.|++.|.+++. .-| ..+.+|||.+..|.-+|+.++|+.-+.+||++.. .. .-.
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~-l~P-~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag----~~--------trt 113 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALC-LAP-ERASAYNNRAQALRLQGDDEEALDDLNKALELAG----DQ--------TRT 113 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHH-hcc-cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcC----cc--------chH
Confidence 445666677888888888888888 667 3677888888888888888888888888888721 00 001
Q ss_pred cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHH
Q 003047 442 SLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPL 478 (854)
Q Consensus 442 ~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~ 478 (854)
...++-..|..|-..|+-+.|..-|..+-++-..+++
T Consensus 114 acqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr 150 (175)
T KOG4555|consen 114 ACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAR 150 (175)
T ss_pred HHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHH
Confidence 2346667788888888888888888888877665544
No 203
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.10 E-value=0.0047 Score=58.78 Aligned_cols=94 Identities=15% Similarity=0.021 Sum_probs=82.8
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCC--ccHHHHHHHHHHHH
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMG--ISSMFNNNLGCIYY 404 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~--~~a~~~nnLG~iy~ 404 (854)
++-..-..|+++.|++.+.+++.+. |..+.+|.+.++.+-.+|+.++|++-+++++....|. ....+|...|.+|.
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~--P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLA--PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhc--ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 3555667899999999999999999 9999999999999999999999999999999852232 23456778899999
Q ss_pred HcCCHHHHHHHHHHHHHh
Q 003047 405 QLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 405 ~~g~~~eAi~~f~kAL~~ 422 (854)
.+|+.+.|-.-|+.|-++
T Consensus 127 l~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQL 144 (175)
T ss_pred HhCchHHHHHhHHHHHHh
Confidence 999999999999999887
No 204
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.10 E-value=0.0081 Score=58.47 Aligned_cols=97 Identities=10% Similarity=-0.028 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCC--ccHHHHHH
Q 003047 324 QLYKVRFLLLTRNLKHAKREVKLAMNIARGKDS---SLALFLKSQLEYARRNHRKAIKLLLALSNRTEMG--ISSMFNNN 398 (854)
Q Consensus 324 ~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~---~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~--~~a~~~nn 398 (854)
.+.+++-.+..|++++|++.++.+.... |-. ..+.+.++..|+..++|++|+..+++.++ .+|. ..+.+++.
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ry--P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir-LhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRY--PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR-LHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCCCCCccHHHHH
Confidence 3446778889999999999999999999 755 56789999999999999999999999999 4443 45788888
Q ss_pred HHHHHHHcCC---------------HHHHHHHHHHHHHhc
Q 003047 399 LGCIYYQLAK---------------YHTSSVFLSKALSNS 423 (854)
Q Consensus 399 LG~iy~~~g~---------------~~eAi~~f~kAL~~~ 423 (854)
.|.++..+.. ..+|...|++.+...
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 9999999877 778888888877763
No 205
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.07 E-value=0.0012 Score=47.44 Aligned_cols=34 Identities=18% Similarity=0.408 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003047 778 GTLYVNIAAMFAMQGEFERAHHFVTQALSILPRS 811 (854)
Q Consensus 778 a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~ 811 (854)
|..++.+|.++..+|++++|+++++++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4578999999999999999999999999999975
No 206
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.02 E-value=0.092 Score=62.83 Aligned_cols=104 Identities=16% Similarity=0.105 Sum_probs=65.8
Q ss_pred HHHHhcCHHHHHHHHHH-----hh----hccCCCccHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHhchh--ccc
Q 003047 366 LEYARRNHRKAIKLLLA-----LS----NRTEMGISSMFNNNLGCIYYQLAKYHTSSVFL------SKALSNSAS--LRK 428 (854)
Q Consensus 366 ly~~~g~~~kAl~~l~k-----al----~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f------~kAL~~~~~--l~~ 428 (854)
+|..-|.+.+|++.--+ +| +..+|+..+..++.-+..+....+|++|.+.+ +.||+++.. ++-
T Consensus 1044 LYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~v 1123 (1416)
T KOG3617|consen 1044 LYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRV 1123 (1416)
T ss_pred HHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Confidence 45566777777664322 11 11456556778888899999999999998765 455555321 100
Q ss_pred -------CCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHH
Q 003047 429 -------DKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKS 469 (854)
Q Consensus 429 -------~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kA 469 (854)
-.+.+...++...+-.++-.+|.+.+++|.|-.|.+-|.+|
T Consensus 1124 tee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1124 TEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred hHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 00111111222335678889999999999999999988875
No 207
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.99 Score=51.79 Aligned_cols=136 Identities=16% Similarity=0.059 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc----CCC--ChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCC
Q 003047 654 IKQALLANLAYVELEMENPVKALAAARSLLE----LPD--CSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNF 727 (854)
Q Consensus 654 l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~----~p~--~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~ 727 (854)
++...|-+++.+-+-.|++++|+.....+.. .|. .-..+...-|...+-=++..|-+++|..++..+++ .+.
T Consensus 321 ~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k-~t~- 398 (629)
T KOG2300|consen 321 FKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATK-LTE- 398 (629)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHH-hhh-
Confidence 3444566677778889999999999988774 344 33333333444444456788999999999999994 111
Q ss_pred CCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003047 728 DLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSI 807 (854)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~ 807 (854)
+ . +-.+....|||.+|...|+-+.-.+.++..
T Consensus 399 ---------------~----------------------~--------dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i--- 430 (629)
T KOG2300|consen 399 ---------------S----------------------I--------DLQAFCNLNLAISYLRIGDAEDLYKALDLI--- 430 (629)
T ss_pred ---------------H----------------------H--------HHHHHHHHhHHHHHHHhccHHHHHHHHHhc---
Confidence 0 0 115778899999999998877655554443
Q ss_pred CCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 003047 808 LPRS----------TEATLTAIYVDLMLGKSQEALAKLKYCN 839 (854)
Q Consensus 808 ~P~~----------~~a~~l~~y~~L~~G~~~eA~~~lk~~~ 839 (854)
.|.+ +-+.+..+.....++++.||...+++.-
T Consensus 431 ~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~L 472 (629)
T KOG2300|consen 431 GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETL 472 (629)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3442 3466667777788999999999998743
No 208
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.00 E-value=0.036 Score=55.98 Aligned_cols=135 Identities=12% Similarity=0.027 Sum_probs=102.6
Q ss_pred cCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHH
Q 003047 335 RNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSV 414 (854)
Q Consensus 335 ~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~ 414 (854)
=+.+...+|..+.+++. |... -.+.+|+.....|++.||...|++++. .--...+..+..++...+..+++.+|..
T Consensus 70 ldP~R~~Rea~~~~~~A--pTvq-nr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~ 145 (251)
T COG4700 70 LDPERHLREATEELAIA--PTVQ-NRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQ 145 (251)
T ss_pred cChhHHHHHHHHHHhhc--hhHH-HHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHH
Confidence 35566777777777777 6543 457889999999999999999999998 3212335677788999999999999999
Q ss_pred HHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 415 FLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 415 ~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
.+++.++-.+..+ .+..+.-+|.+|...|++++|...|+.++..+|+. .+..+-++.+.
T Consensus 146 tLe~l~e~~pa~r--------------~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La 204 (251)
T COG4700 146 TLEDLMEYNPAFR--------------SPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLA 204 (251)
T ss_pred HHHHHhhcCCccC--------------CCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHH
Confidence 9999888733222 12233345999999999999999999999999984 34444455544
No 209
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=0.014 Score=61.67 Aligned_cols=135 Identities=11% Similarity=0.023 Sum_probs=111.8
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHhhhc----cCCCccHHHHHHH
Q 003047 325 LYKVRFLLLTRNLKHAKREVKLAMNIARGKDS-SLALFLKSQLEYARRNHRKAIKLLLALSNR----TEMGISSMFNNNL 399 (854)
Q Consensus 325 l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~-~~a~~lla~ly~~~g~~~kAl~~l~kal~~----~dp~~~a~~~nnL 399 (854)
+.-.++++-.|.+.-....++++++.+ |.. +.-.--+|.+-++.|+.+-|..+++++-+. .+-...-.++.|+
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~--~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYY--PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhC--CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 344677777888888888889999988 655 444567999999999999999999976652 1222456788889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCH
Q 003047 400 GCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQP 477 (854)
Q Consensus 400 G~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~ 477 (854)
+.+|.-.++|..|...|.+.+.. .+.++.+..|.+.|++.+|+..+|++..+.++++.|...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~----------------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRM----------------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhheecccchHHHHHHHhhcccc----------------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 99999999999999999999887 345677888999999999999999999999999999864
No 210
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.86 E-value=0.011 Score=59.63 Aligned_cols=82 Identities=16% Similarity=0.096 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcC----------HHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHc
Q 003047 337 LKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRN----------HRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQL 406 (854)
Q Consensus 337 ~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~----------~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~ 406 (854)
++.|.+.++.....+ |.+++.++.-|..+..+.+ +++|+.-|+.+|. .+|+ ...++.++|.+|..+
T Consensus 7 FE~ark~aea~y~~n--P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~-I~P~-~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN--PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK-INPN-KHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-H-TT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh-cCCc-hHHHHHHHHHHHHHH
Confidence 367888889999999 9999999988888776644 4566777777777 7995 577888999999876
Q ss_pred CC-----------HHHHHHHHHHHHHh
Q 003047 407 AK-----------YHTSSVFLSKALSN 422 (854)
Q Consensus 407 g~-----------~~eAi~~f~kAL~~ 422 (854)
+. |++|..||++|...
T Consensus 83 A~l~~d~~~A~~~F~kA~~~FqkAv~~ 109 (186)
T PF06552_consen 83 AFLTPDTAEAEEYFEKATEYFQKAVDE 109 (186)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCChHHHHHHHHHHHHHHHHHHhc
Confidence 55 44555555555554
No 211
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.79 E-value=0.0023 Score=46.02 Aligned_cols=33 Identities=24% Similarity=0.162 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC
Q 003047 444 LITYNCGLQYLACGKPVLAARCFQKSSLVFYKQ 476 (854)
Q Consensus 444 ~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~ 476 (854)
.+|+.+|.+|..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 579999999999999999999999999999964
No 212
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.72 E-value=0.0018 Score=47.31 Aligned_cols=32 Identities=19% Similarity=0.154 Sum_probs=24.3
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHH
Q 003047 344 VKLAMNIARGKDSSLALFLKSQLEYARRNHRKAI 377 (854)
Q Consensus 344 lk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl 377 (854)
++++|+++ |+|+.+++.+|.+|...|++++|+
T Consensus 2 y~kAie~~--P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN--PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC--CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 46677777 777777777777777777777775
No 213
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.69 E-value=0.36 Score=55.20 Aligned_cols=122 Identities=13% Similarity=-0.008 Sum_probs=80.9
Q ss_pred HHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-----HHhcCHHHHHHHHHHhhh------c------------
Q 003047 330 FLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLE-----YARRNHRKAIKLLLALSN------R------------ 386 (854)
Q Consensus 330 lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly-----~~~g~~~kAl~~l~kal~------~------------ 386 (854)
+-+..|+.-.|+....+++.. |+-..++-.+|.+| +...+..+|...+.--+- .
T Consensus 518 V~L~Lgd~i~AL~~a~kLLq~---~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~ 594 (696)
T KOG2471|consen 518 VELELGDPIKALSAATKLLQL---ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWK 594 (696)
T ss_pred HHHHhcChhhHHHHHHHHHhh---hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhc
Confidence 456778888899888888887 67777777777665 567888888888766221 0
Q ss_pred ----cCCC--------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHH
Q 003047 387 ----TEMG--------------ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYN 448 (854)
Q Consensus 387 ----~dp~--------------~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~n 448 (854)
.+|. -...++.|||..|.-+|++++|..++..|..+...+- + .++..-
T Consensus 595 ~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v------------~--~~A~~l 660 (696)
T KOG2471|consen 595 HTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLV------------N--VQATVL 660 (696)
T ss_pred cccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccc------------c--HHHHHH
Confidence 0111 1134567899999999999999999999888743221 1 122221
Q ss_pred HHHHHHHCCCcHHHHHHHHH
Q 003047 449 CGLQYLACGKPVLAARCFQK 468 (854)
Q Consensus 449 LG~~ll~~Gk~eeAl~~y~k 468 (854)
.--.=+++|+...|+..+++
T Consensus 661 avyidL~~G~~q~al~~lk~ 680 (696)
T KOG2471|consen 661 AVYIDLMLGRSQDALARLKQ 680 (696)
T ss_pred HHHHHHhcCCCcchHHHHHh
Confidence 22234567777777776655
No 214
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.62 E-value=0.0021 Score=47.00 Aligned_cols=34 Identities=26% Similarity=0.294 Sum_probs=31.4
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003047 800 FVTQALSILPRSTEATLTAIYVDLMLGKSQEALA 833 (854)
Q Consensus 800 ~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~ 833 (854)
+|++|++++|+++.++..++.++...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 5789999999999999999999999999999863
No 215
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.60 E-value=0.0025 Score=72.38 Aligned_cols=114 Identities=12% Similarity=0.068 Sum_probs=99.4
Q ss_pred HHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCcc
Q 003047 363 KSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKS 442 (854)
Q Consensus 363 la~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~ 442 (854)
.++-.+.-+.|+.|+..|.+++. .+|+ .+.++-+.+..|.+.+.+..|+.-+.+|++.. +..
T Consensus 10 ean~~l~~~~fd~avdlysKaI~-ldpn-ca~~~anRa~a~lK~e~~~~Al~Da~kaie~d----------------P~~ 71 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIE-LDPN-CAIYFANRALAHLKVESFGGALHDALKAIELD----------------PTY 71 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHh-cCCc-ceeeechhhhhheeechhhhHHHHHHhhhhcC----------------chh
Confidence 45556677899999999999999 7994 67788888999999999999999999999983 345
Q ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Q 003047 443 LLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKG 494 (854)
Q Consensus 443 ~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~ 494 (854)
..+|+..|.+.+..+++.+|+..|++...+.|+.+.+.-.+.+|-...-+.+
T Consensus 72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~ 123 (476)
T KOG0376|consen 72 IKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEK 123 (476)
T ss_pred hheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHh
Confidence 6788889999999999999999999999999999999999999877544533
No 216
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.0062 Score=66.16 Aligned_cols=100 Identities=10% Similarity=0.035 Sum_probs=85.1
Q ss_pred HHHHHHHHhcCHHHHHHHHHHhhhc--cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccC
Q 003047 362 LKSQLEYARRNHRKAIKLLLALSNR--TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQ 439 (854)
Q Consensus 362 lla~ly~~~g~~~kAl~~l~kal~~--~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~ 439 (854)
--|+-|+...+|+.|+.+|.+.|+. .+|+.++..|+|.+.+.+-.|+|..|+.-..+|+.. .
T Consensus 86 eeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~----------------~ 149 (390)
T KOG0551|consen 86 EEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL----------------K 149 (390)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc----------------C
Confidence 4589999999999999999999885 677788889999999999999999999999999998 3
Q ss_pred CccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCH
Q 003047 440 DKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQP 477 (854)
Q Consensus 440 ~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~ 477 (854)
|.+..+++.-+.|++.+.++.+|...++..+.++-+.-
T Consensus 150 P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K 187 (390)
T KOG0551|consen 150 PTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAK 187 (390)
T ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 45567888889999999999999888888887776643
No 217
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.48 E-value=0.021 Score=60.33 Aligned_cols=138 Identities=22% Similarity=0.208 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHc-C-CCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchh
Q 003047 658 LLANLAYVELEMENPVKALAAARSLLE-L-PDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGED 735 (854)
Q Consensus 658 ~l~~la~v~l~lg~~~~Al~~~~~lL~-~-p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~ 735 (854)
.-++++.+++.+|+|...++.+++++. . |..|.....|+++.+ +.|+.+.|..++++.-+ ...
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~M-----Q~GD~k~a~~yf~~vek-~~~--------- 243 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISM-----QIGDIKTAEKYFQDVEK-VTQ--------- 243 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHH-----hcccHHHHHHHHHHHHH-HHh---------
Confidence 345678899999999999999999997 4 457778888888655 78999999999986542 110
Q ss_pred hhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 003047 736 CEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEAT 815 (854)
Q Consensus 736 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~ 815 (854)
.+.+ + ...-.++-|.+.+|..++++..|...+.+++..+|.++.+.
T Consensus 244 ---kL~~----------~---------------------q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~ 289 (366)
T KOG2796|consen 244 ---KLDG----------L---------------------QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVAN 289 (366)
T ss_pred ---hhhc----------c---------------------chhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhh
Confidence 0000 0 11467788999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHh-cCCCccc
Q 003047 816 LTAIYVDLMLGKSQEALAKLKY-CNHVRFL 844 (854)
Q Consensus 816 ~l~~y~~L~~G~~~eA~~~lk~-~~~~~~~ 844 (854)
.+.+.|++-.|+...|+..+.+ .+.+|..
T Consensus 290 NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 290 NNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 9999999999999999999998 5555543
No 218
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.012 Score=64.07 Aligned_cols=94 Identities=15% Similarity=0.089 Sum_probs=78.1
Q ss_pred cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHH
Q 003047 387 TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCF 466 (854)
Q Consensus 387 ~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y 466 (854)
.+|+..+.-|--=|.-|++-++|..|+.+|.+.|+. ...+ .+-.+.+|.|.+.|.+..|+|..|+.-+
T Consensus 75 ~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~----kc~D--------~dlnavLY~NRAAa~~~l~NyRs~l~Dc 142 (390)
T KOG0551|consen 75 GEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK----KCAD--------PDLNAVLYTNRAAAQLYLGNYRSALNDC 142 (390)
T ss_pred CChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh----cCCC--------ccHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 456544444444599999999999999999999997 2111 1235678889999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHh
Q 003047 467 QKSSLVFYKQPLLWLRLAECCLMALE 492 (854)
Q Consensus 467 ~kAL~l~P~~~~aw~~La~~~i~~~~ 492 (854)
.+++.++|.+..+++|=|.|.+.+.+
T Consensus 143 s~al~~~P~h~Ka~~R~Akc~~eLe~ 168 (390)
T KOG0551|consen 143 SAALKLKPTHLKAYIRGAKCLLELER 168 (390)
T ss_pred HHHHhcCcchhhhhhhhhHHHHHHHH
Confidence 99999999999999999999997665
No 219
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.40 E-value=0.12 Score=59.39 Aligned_cols=136 Identities=16% Similarity=0.068 Sum_probs=97.3
Q ss_pred HhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhh-------cc---CC-----------Cc
Q 003047 333 LTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSN-------RT---EM-----------GI 391 (854)
Q Consensus 333 ~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~-------~~---dp-----------~~ 391 (854)
...+..+.++..+++++++ |+-+++++++|.=. -....+|.++|+++++ .. +. +.
T Consensus 180 RERnp~aRIkaA~eALei~--pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt 255 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEIN--PDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDT 255 (539)
T ss_pred hcCCHHHHHHHHHHHHHhh--hhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhcccc
Confidence 4578888999999999999 99999999988521 1224455555555443 10 00 01
Q ss_pred --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHH
Q 003047 392 --SSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKS 469 (854)
Q Consensus 392 --~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kA 469 (854)
...+-..++.+..++|+.++|++.|+..++..+. .....+.+||-.+|+..+.|.++-..+.+.
T Consensus 256 ~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~--------------~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 256 NVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN--------------LDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred chhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc--------------cchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 1334456899999999999999999999987331 123468899999999999999999988887
Q ss_pred HHh-cCCCHHHHHHHHHH
Q 003047 470 SLV-FYKQPLLWLRLAEC 486 (854)
Q Consensus 470 L~l-~P~~~~aw~~La~~ 486 (854)
=++ .|+.+...+.-|..
T Consensus 322 dDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 322 DDISLPKSATICYTAALL 339 (539)
T ss_pred ccccCCchHHHHHHHHHH
Confidence 554 36666665555543
No 220
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.36 E-value=1.3 Score=48.26 Aligned_cols=67 Identities=21% Similarity=0.206 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHhh-cHHHHHHHHHHhhhccCC---C----chh--hHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 003047 146 SVAKLNIAVIWFHLH-EYAKALSVLEPLYQNIEP---I----DET--TALQICLLLLDVALACHDAFRSADVLIYLE 212 (854)
Q Consensus 146 ~~~~~n~a~~~~~~~-~y~~A~~~~e~l~~~~~~---~----~e~--~~~~~~l~l~~vy~~~~~~~kA~~~l~~le 212 (854)
+..+||.|.-.+..+ +|+.|+..+++++.+++. . .+. +-..++.+++.+|+..+.++......+.++
T Consensus 35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~ 111 (278)
T PF08631_consen 35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALR 111 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 446677777777777 888888888877776422 1 111 455677778899999998875544333333
No 221
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.01 Score=61.87 Aligned_cols=94 Identities=11% Similarity=-0.038 Sum_probs=85.1
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHc
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQL 406 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~ 406 (854)
+..-|..-+.++.|+.++-+++.++ |..+.|+.+.+..|++..+++.+..-..+++. .+|+ ....++-+|......
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~n--P~~~~Y~tnralchlk~~~~~~v~~dcrralq-l~~N-~vk~h~flg~~~l~s 91 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICIN--PTVASYYTNRALCHLKLKHWEPVEEDCRRALQ-LDPN-LVKAHYFLGQWLLQS 91 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcC--CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh-cChH-HHHHHHHHHHHHHhh
Confidence 3445556688999999999999999 99999999999999999999999999999999 7884 678899999999999
Q ss_pred CCHHHHHHHHHHHHHhch
Q 003047 407 AKYHTSSVFLSKALSNSA 424 (854)
Q Consensus 407 g~~~eAi~~f~kAL~~~~ 424 (854)
+.|++||..+.+|..+.+
T Consensus 92 ~~~~eaI~~Lqra~sl~r 109 (284)
T KOG4642|consen 92 KGYDEAIKVLQRAYSLLR 109 (284)
T ss_pred ccccHHHHHHHHHHHHHh
Confidence 999999999999988743
No 222
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.052 Score=56.94 Aligned_cols=112 Identities=11% Similarity=-0.072 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-------cCCC---------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003047 357 SLALFLKSQLEYARRNHRKAIKLLLALSNR-------TEMG---------ISSMFNNNLGCIYYQLAKYHTSSVFLSKAL 420 (854)
Q Consensus 357 ~~a~~lla~ly~~~g~~~kAl~~l~kal~~-------~dp~---------~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL 420 (854)
.+.+...|+-++..|+|++|...|..++.. ..|. .....+.|+..|+...|+|-++++....+|
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 357788999999999999999999998751 2232 123467789999999999999999999999
Q ss_pred HhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHH
Q 003047 421 SNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLA 484 (854)
Q Consensus 421 ~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La 484 (854)
.. .+.+..++|..|.+....=+..+|..-|.++|+++|.-..+-.+-.
T Consensus 258 ~~----------------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrEl 305 (329)
T KOG0545|consen 258 RH----------------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSREL 305 (329)
T ss_pred hc----------------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHH
Confidence 97 4566789999999999999999999999999999999876644433
No 223
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.32 E-value=0.1 Score=59.98 Aligned_cols=160 Identities=16% Similarity=0.144 Sum_probs=102.9
Q ss_pred CcchhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHH
Q 003047 18 EDDSGVLSVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEEL 97 (854)
Q Consensus 18 ~~~~~~~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 97 (854)
+.|.+ ..++.+.++|- +..+.++.++.=+++|+++|+++.++--|+- = .. .-..++...++++++.-
T Consensus 164 d~D~~--r~Aq~IMq~AW---RERnp~aRIkaA~eALei~pdCAdAYILLAE--E---eA---~Ti~Eae~l~rqAvkAg 230 (539)
T PF04184_consen 164 DTDAL--RPAQEIMQKAW---RERNPQARIKAAKEALEINPDCADAYILLAE--E---EA---STIVEAEELLRQAVKAG 230 (539)
T ss_pred CCCcc--CHHHHHHHHHH---hcCCHHHHHHHHHHHHHhhhhhhHHHhhccc--c---cc---cCHHHHHHHHHHHHHHH
Confidence 44444 46777777665 7899999999999999999999999876662 1 11 22233555555555321
Q ss_pred HhhhcccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccC
Q 003047 98 ARATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIE 177 (854)
Q Consensus 98 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~ 177 (854)
.+++|.....+..|..- .....-+----......+|.+..++|+..+|++.++.+++..+
T Consensus 231 ----------E~~lg~s~~~~~~g~~~----------e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p 290 (539)
T PF04184_consen 231 ----------EASLGKSQFLQHHGHFW----------EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP 290 (539)
T ss_pred ----------HHhhchhhhhhcccchh----------hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC
Confidence 11122111111111100 0000000000234556789999999999999999999999665
Q ss_pred CCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 003047 178 PIDETTALQICLLLLDVALACHDAFRSADVLIYLEK 213 (854)
Q Consensus 178 ~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek 213 (854)
..+. ..|..+|++.++..+.|.++..+|.+|+.
T Consensus 291 ~~~~---l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 291 NLDN---LNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred ccch---hhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3333 34788999999999999999999888873
No 224
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.31 E-value=0.48 Score=57.76 Aligned_cols=102 Identities=16% Similarity=0.066 Sum_probs=82.4
Q ss_pred HhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHH
Q 003047 369 ARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYN 448 (854)
Q Consensus 369 ~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~n 448 (854)
..+++++|+.-+.++++ ..|+ ...+..--|.++.++|+.++|..+++ ++... ...+..++--
T Consensus 21 d~~qfkkal~~~~kllk-k~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le-~~~~~---------------~~~D~~tLq~ 82 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLK-KHPN-ALYAKVLKALSLFRLGKGDEALKLLE-ALYGL---------------KGTDDLTLQF 82 (932)
T ss_pred hhHHHHHHHHHHHHHHH-HCCC-cHHHHHHHHHHHHHhcCchhHHHHHh-hhccC---------------CCCchHHHHH
Confidence 45899999999999999 6884 45566657999999999999995443 44431 1124567777
Q ss_pred HHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003047 449 CGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLM 489 (854)
Q Consensus 449 LG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~ 489 (854)
+-.||-.++++++|+.+|++++..+|+ ....+.+=.|++.
T Consensus 83 l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR 122 (932)
T KOG2053|consen 83 LQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVR 122 (932)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHH
Confidence 899999999999999999999999999 8888888888873
No 225
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.29 E-value=0.24 Score=52.20 Aligned_cols=133 Identities=11% Similarity=0.068 Sum_probs=84.4
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc---cCC-CccHHHHHHHHHHHH
Q 003047 329 RFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNR---TEM-GISSMFNNNLGCIYY 404 (854)
Q Consensus 329 ~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~---~dp-~~~a~~~nnLG~iy~ 404 (854)
.+|...|..+.|--.++++-.. ...-++++|+.+|++++.. .+. ......+-..+.++-
T Consensus 99 ~lY~E~GspdtAAmaleKAak~-----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lV 161 (308)
T KOG1585|consen 99 ELYVECGSPDTAAMALEKAAKA-----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLV 161 (308)
T ss_pred HHHHHhCCcchHHHHHHHHHHH-----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhh
Confidence 4566677765555554444333 3557888999999998873 111 111234445688899
Q ss_pred HcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc----CCCHHHH
Q 003047 405 QLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVF----YKQPLLW 480 (854)
Q Consensus 405 ~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~----P~~~~aw 480 (854)
+..++++|-..|.|-......... .+.....+...-++|+...+|..|..||+...++. |++.+..
T Consensus 162 rl~kf~Eaa~a~lKe~~~~~~~~~----------y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 162 RLEKFTEAATAFLKEGVAADKCDA----------YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred hhHHhhHHHHHHHHhhhHHHHHhh----------cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 999999999988885554221110 11223344444566777779999999999987764 5556677
Q ss_pred HHHHHHHH
Q 003047 481 LRLAECCL 488 (854)
Q Consensus 481 ~~La~~~i 488 (854)
.+|...|-
T Consensus 232 enLL~ayd 239 (308)
T KOG1585|consen 232 ENLLTAYD 239 (308)
T ss_pred HHHHHHhc
Confidence 77776554
No 226
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.26 E-value=0.0071 Score=44.61 Aligned_cols=28 Identities=36% Similarity=0.475 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003047 395 FNNNLGCIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 395 ~~nnLG~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
+|++||.+|.++|++++|+.+|+++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4788999999999999999999998876
No 227
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.24 E-value=3.2 Score=47.70 Aligned_cols=277 Identities=11% Similarity=0.022 Sum_probs=170.3
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccC
Q 003047 38 FQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGNIGSKVGL 117 (854)
Q Consensus 38 ~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 117 (854)
-..++++.|-.+|..+|+.+..+...|-.-+-+++-... .+ .+-+-..+++.
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~---vN---hARNv~dRAvt---------------------- 135 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQ---VN---HARNVWDRAVT---------------------- 135 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhh---Hh---HHHHHHHHHHH----------------------
Confidence 456889999999999999998888888777755442111 11 12222334442
Q ss_pred CCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHH
Q 003047 118 GSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALA 197 (854)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~ 197 (854)
.+-.+++ +||..-.+=-.+|+..-|-.+||+=+. .+|-.. +.+..++.=+.
T Consensus 136 ---------------------~lPRVdq--lWyKY~ymEE~LgNi~gaRqiferW~~-w~P~eq-----aW~sfI~fElR 186 (677)
T KOG1915|consen 136 ---------------------ILPRVDQ--LWYKYIYMEEMLGNIAGARQIFERWME-WEPDEQ-----AWLSFIKFELR 186 (677)
T ss_pred ---------------------hcchHHH--HHHHHHHHHHHhcccHHHHHHHHHHHc-CCCcHH-----HHHHHHHHHHH
Confidence 1213444 899888888899999999999999998 444333 46667777788
Q ss_pred ccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhh
Q 003047 198 CHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLE 277 (854)
Q Consensus 198 ~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (854)
.++.+.|-.||.+|- -.. + + .
T Consensus 187 ykeieraR~IYerfV---~~H--P--~--------------------------------v-------------------- 207 (677)
T KOG1915|consen 187 YKEIERARSIYERFV---LVH--P--K--------------------------------V-------------------- 207 (677)
T ss_pred hhHHHHHHHHHHHHh---eec--c--c--------------------------------H--------------------
Confidence 889999987764443 221 1 0 0
Q ss_pred hhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCH
Q 003047 278 DDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSS 357 (854)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~ 357 (854)
+ -.+.-+++-...|+..-|..-+.++++.. .++.
T Consensus 208 --------------~------------------------------~wikyarFE~k~g~~~~aR~VyerAie~~--~~d~ 241 (677)
T KOG1915|consen 208 --------------S------------------------------NWIKYARFEEKHGNVALARSVYERAIEFL--GDDE 241 (677)
T ss_pred --------------H------------------------------HHHHHHHHHHhcCcHHHHHHHHHHHHHHh--hhHH
Confidence 0 01112445556777777888888888777 5543
Q ss_pred HH-H--HHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHH-HHHHHHHHcCCH---HHHHHHHHHHHHhchhcccCC
Q 003047 358 LA-L--FLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNN-NLGCIYYQLAKY---HTSSVFLSKALSNSASLRKDK 430 (854)
Q Consensus 358 ~a-~--~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~n-nLG~iy~~~g~~---~eAi~~f~kAL~~~~~l~~~~ 430 (854)
.+ . +..|...-.+..++.|--+|+-++. .-|...+.-++ ..-..-.+-|+. +.+|.. ++=++-
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld-~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~-KRk~qY-------- 311 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALD-HIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG-KRKFQY-------- 311 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh-hhhhHH--------
Confidence 32 2 3445666678889999999999988 44543333332 122222233442 222221 111111
Q ss_pred ccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCH--HHHHHHHHHHH
Q 003047 431 PLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQP--LLWLRLAECCL 488 (854)
Q Consensus 431 ~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~--~aw~~La~~~i 488 (854)
+.....+|-+..+|+..-......|+.+.-.+.|++|+.--|--. ..|-+-.-.++
T Consensus 312 --E~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWi 369 (677)
T KOG1915|consen 312 --EKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWI 369 (677)
T ss_pred --HHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHH
Confidence 000011345678898877778888999999999999998776542 34555544444
No 228
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.20 E-value=0.16 Score=49.40 Aligned_cols=118 Identities=22% Similarity=0.196 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCch-hhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCC
Q 003047 692 YIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGE-DCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMF 770 (854)
Q Consensus 692 ~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p 770 (854)
..|...+-.+......++.++++..+..++.- =-. .|-.+ ....|......-.
T Consensus 4 ~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~l--y~G-~~l~~~~~~~W~~~~r~~l----------------------- 57 (146)
T PF03704_consen 4 DRFEALVREARAAARAGDPEEAIELLEEALAL--YRG-DFLPDLDDEEWVEPERERL----------------------- 57 (146)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT----S-STTGGGTTSTTHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hCC-CCCCCCCccHHHHHHHHHH-----------------------
Confidence 33444444555666788999999999999931 000 01111 1123332221111
Q ss_pred CCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 003047 771 PKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKYC 838 (854)
Q Consensus 771 ~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~~ 838 (854)
......+...++..+...|++++|...+++++.++|-+-.++..++.++...|+..+|+.++++.
T Consensus 58 ---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 58 ---RELYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp ---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 11244556668888888999999999999999999999999999999999999999999999873
No 229
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.15 E-value=0.0084 Score=43.06 Aligned_cols=33 Identities=24% Similarity=0.582 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003047 779 TLYVNIAAMFAMQGEFERAHHFVTQALSILPRS 811 (854)
Q Consensus 779 ~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~ 811 (854)
.+|+.+|.+|..+|++++|.++|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 568999999999999999999999999999863
No 230
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.14 E-value=0.091 Score=51.04 Aligned_cols=98 Identities=12% Similarity=-0.008 Sum_probs=75.8
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhcCCC------C--------------CHHHHHHHHHHHHHhcCHHHHHHHHHHhh
Q 003047 325 LYKVRFLLLTRNLKHAKREVKLAMNIARGK------D--------------SSLALFLKSQLEYARRNHRKAIKLLLALS 384 (854)
Q Consensus 325 l~K~~lyl~~~~~~~A~~elk~al~~~~~P------~--------------~~~a~~lla~ly~~~g~~~kAl~~l~kal 384 (854)
+..+......++.+.+++.+++++.+.+|| . ...++..++..+...|++++|+..+++++
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l 89 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL 89 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 334555667789999999999999999753 1 12344567888999999999999999999
Q ss_pred hccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 003047 385 NRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSA 424 (854)
Q Consensus 385 ~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~ 424 (854)
. .+| .+..++..+-.+|..+|++.+|+..|++.-..+.
T Consensus 90 ~-~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~ 127 (146)
T PF03704_consen 90 A-LDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLR 127 (146)
T ss_dssp H-HST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred h-cCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 9 799 4677888899999999999999999999888743
No 231
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.11 E-value=0.013 Score=63.76 Aligned_cols=150 Identities=9% Similarity=-0.038 Sum_probs=110.7
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHH
Q 003047 326 YKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ 405 (854)
Q Consensus 326 ~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~ 405 (854)
.++.-|..+|++++|+.|+-+.+... |.|+-++.+.|..|+...+|..|..-++.++. .+. ....+|...|..-..
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~--P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia-Ld~-~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVY--PHNPVYHINRALAYLKQKSFAQAEEDCEAAIA-LDK-LYVKAYSRRMQARES 177 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccC--CCCccchhhHHHHHHHHHHHHHHHHhHHHHHH-hhH-HHHHHHHHHHHHHHH
Confidence 36778899999999999999999999 99999999999999999999999999999999 455 357789999999999
Q ss_pred cCCHHHHHHHHHHHHHhchh---ccc----CCcc-c--cccccCCcc-------HHH--HHHHHHHHHHCCCcHHHHHHH
Q 003047 406 LAKYHTSSVFLSKALSNSAS---LRK----DKPL-K--LLTFSQDKS-------LLI--TYNCGLQYLACGKPVLAARCF 466 (854)
Q Consensus 406 ~g~~~eAi~~f~kAL~~~~~---l~~----~~~l-~--~~~~~~~~~-------~~~--~~nLG~~ll~~Gk~eeAl~~y 466 (854)
+|+..+|-+-++.+|.+-+. ++. -.++ + +.....+.. ... .-.-|.-+...|+++.++.||
T Consensus 178 Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~ 257 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDV 257 (536)
T ss_pred HhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEe
Confidence 99999999999999998432 100 0000 0 000001000 011 123366677777888888887
Q ss_pred HHHHHhcCCCHHH
Q 003047 467 QKSSLVFYKQPLL 479 (854)
Q Consensus 467 ~kAL~l~P~~~~a 479 (854)
.+-+..+.++..+
T Consensus 258 ~~~~A~~~~~~~L 270 (536)
T KOG4648|consen 258 VSPRATIDDSNQL 270 (536)
T ss_pred eccccccCccccC
Confidence 7766665555443
No 232
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.10 E-value=0.71 Score=55.44 Aligned_cols=272 Identities=16% Similarity=0.086 Sum_probs=167.0
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccCCCCC
Q 003047 42 KFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGNIGSKVGLGSKG 121 (854)
Q Consensus 42 ~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 121 (854)
+-.+|++.++.+-+ .++....+.+|.+++.- .+..+.++.+++..++.+...+......
T Consensus 227 ~~~~a~~~~~~~a~--~g~~~a~~~~g~~y~~G-~~g~~~d~e~a~~~l~~aa~~~~~~a~~------------------ 285 (552)
T KOG1550|consen 227 ELSEAFKYYREAAK--LGHSEAQYALGICYLAG-TYGVTQDLESAIEYLKLAAESFKKAATK------------------ 285 (552)
T ss_pred hhhHHHHHHHHHHh--hcchHHHHHHHHHHhhc-cccccccHHHHHHHHHHHHHHHHHHHhh------------------
Confidence 45677788877754 46788899999886643 3567788888999998888521110000
Q ss_pred CCcccccccccccCCcccccchhhHHHHHHHHHHHHHh----h-cHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHH
Q 003047 122 SGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHL----H-EYAKALSVLEPLYQNIEPIDETTALQICLLLLDVAL 196 (854)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~----~-~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~ 196 (854)
..+.+.|.+|.+|.+- . ++.+|+++|.+.-..= . .+ .+++++.+|.
T Consensus 286 ----------------------~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~-~~-----a~~~lg~~~~ 336 (552)
T KOG1550|consen 286 ----------------------GLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-N-PD-----AQYLLGVLYE 336 (552)
T ss_pred ----------------------cCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-C-ch-----HHHHHHHHHH
Confidence 0233667778887773 3 8899999998888732 2 22 3677777777
Q ss_pred Hcc---CHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhh
Q 003047 197 ACH---DAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSE 273 (854)
Q Consensus 197 ~~~---~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (854)
... ++.+|. .+|..+.... .. +.
T Consensus 337 ~g~~~~d~~~A~---~yy~~Aa~~G-----~~-----------------------------~A----------------- 362 (552)
T KOG1550|consen 337 TGTKERDYRRAF---EYYSLAAKAG-----HI-----------------------------LA----------------- 362 (552)
T ss_pred cCCccccHHHHH---HHHHHHHHcC-----Ch-----------------------------HH-----------------
Confidence 666 456775 5777665322 00 00
Q ss_pred hhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCC
Q 003047 274 ETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARG 353 (854)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~ 353 (854)
.-+++..|.. . -....+.+.|..-++++.+.+
T Consensus 363 ----------------------------~~~la~~y~~----------------G--~gv~r~~~~A~~~~k~aA~~g-- 394 (552)
T KOG1550|consen 363 ----------------------------IYRLALCYEL----------------G--LGVERNLELAFAYYKKAAEKG-- 394 (552)
T ss_pred ----------------------------HHHHHHHHHh----------------C--CCcCCCHHHHHHHHHHHHHcc--
Confidence 0001111100 0 001247778888888888887
Q ss_pred CCCHHHHHHHHHHHHHh-cCHHHHHHHHHHhhhc--cCCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhchhc
Q 003047 354 KDSSLALFLKSQLEYAR-RNHRKAIKLLLALSNR--TEMGISSMFNNNLGCIYYQ----LAKYHTSSVFLSKALSNSASL 426 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~-g~~~kAl~~l~kal~~--~dp~~~a~~~nnLG~iy~~----~g~~~eAi~~f~kAL~~~~~l 426 (854)
++.+.+.++.++... +++..+.-.+...... ..+..++..+......+.. ..+...+...+.++...
T Consensus 395 --~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~---- 468 (552)
T KOG1550|consen 395 --NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQ---- 468 (552)
T ss_pred --ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhc----
Confidence 566667766666543 7777777766655442 1121122222222211111 12566666767666554
Q ss_pred ccCCccccccccCCccHHHHHHHHHHHHHC---CC-cHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 427 RKDKPLKLLTFSQDKSLLITYNCGLQYLAC---GK-PVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 427 ~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~---Gk-~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
.+..+...+|.+|+.- ++ ++.|+.+|.++.... +...++||.++-
T Consensus 469 --------------g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e 517 (552)
T KOG1550|consen 469 --------------GNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHE 517 (552)
T ss_pred --------------cCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHh
Confidence 2456777889988876 55 999999999998888 888899997655
No 233
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.031 Score=58.59 Aligned_cols=95 Identities=14% Similarity=0.023 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcc-cCCccc-cccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Q 003047 394 MFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLR-KDKPLK-LLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSL 471 (854)
Q Consensus 394 ~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~-~~~~l~-~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~ 471 (854)
.++..-|+-+++.|+|.+|+..|+.|+....++. .+++-+ -+..-......++.|..-|++..|+|-++++....+|.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 4566789999999999999999999999876653 111100 00000011234678999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHH
Q 003047 472 VFYKQPLLWLRLAECCL 488 (854)
Q Consensus 472 l~P~~~~aw~~La~~~i 488 (854)
.+|+|..++++.|.+..
T Consensus 259 ~~~~nvKA~frRakAha 275 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHA 275 (329)
T ss_pred cCCchHHHHHHHHHHHH
Confidence 99999999999997655
No 234
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.97 E-value=5.8 Score=48.24 Aligned_cols=123 Identities=13% Similarity=0.058 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhc----c-----CCC---------------ccHHHHHHHHHHHHHcCCHHHHHH
Q 003047 359 ALFLKSQLEYARRNHRKAIKLLLALSNR----T-----EMG---------------ISSMFNNNLGCIYYQLAKYHTSSV 414 (854)
Q Consensus 359 a~~lla~ly~~~g~~~kAl~~l~kal~~----~-----dp~---------------~~a~~~nnLG~iy~~~g~~~eAi~ 414 (854)
.+++-|...+..+..++|.+++.++++. . .|. ....++..++.+.+-++++.+|..
T Consensus 303 ~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~ 382 (608)
T PF10345_consen 303 VYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQ 382 (608)
T ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 3456688888888888999999888873 1 111 011233346888888999999999
Q ss_pred HHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHH--------HHHHhcCCCHHHHHHHHHH
Q 003047 415 FLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQ--------KSSLVFYKQPLLWLRLAEC 486 (854)
Q Consensus 415 ~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~--------kAL~l~P~~~~aw~~La~~ 486 (854)
.+..+-....+.... +...-.+.++|-.|..+...|+.+.|...|. .+....+.+.-..+...++
T Consensus 383 ~l~~~~~~~~~~~~~-------~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl 455 (608)
T PF10345_consen 383 ELEFMRQLCQRSPSK-------LYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNL 455 (608)
T ss_pred HHHHHHHHHhcCccc-------hhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHH
Confidence 888877764322100 0011246788899999999999999999998 4444555544444444444
Q ss_pred HH
Q 003047 487 CL 488 (854)
Q Consensus 487 ~i 488 (854)
++
T Consensus 456 ~~ 457 (608)
T PF10345_consen 456 AI 457 (608)
T ss_pred HH
Confidence 44
No 235
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.87 E-value=5.7 Score=47.36 Aligned_cols=514 Identities=14% Similarity=0.068 Sum_probs=279.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH--HHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Q 003047 33 EAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIA--IAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGN 110 (854)
Q Consensus 33 ~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 110 (854)
+=..+....=..+=.-+|+.++..-|.+-++|+.-. +....+..|.....|...=..+++.+.
T Consensus 32 RYIe~k~~sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv--------------- 96 (835)
T KOG2047|consen 32 RYIEHKAGSPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLV--------------- 96 (835)
T ss_pred HHHHHHccCChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHH---------------
Confidence 334455555666777889999999999999998765 444444555554444333334444442
Q ss_pred CCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHH
Q 003047 111 IGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLL 190 (854)
Q Consensus 111 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~ 190 (854)
.+ -+.+..|.-....+..+++...---.|.+++.-++- +.+.+|.-+
T Consensus 97 ----------------------------~m--HkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpv---tqH~rIW~l 143 (835)
T KOG2047|consen 97 ----------------------------FM--HKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPV---TQHDRIWDL 143 (835)
T ss_pred ----------------------------HH--hcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCch---HhhccchHH
Confidence 11 123457777788888999998888888888885432 445566666
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhh
Q 003047 191 LLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRT 270 (854)
Q Consensus 191 l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (854)
.+.-....+-+.-++.+|-+|-|..+-. .+ +... .-....+
T Consensus 144 yl~Fv~~~~lPets~rvyrRYLk~~P~~-------------~e---------------------eyie-----~L~~~d~ 184 (835)
T KOG2047|consen 144 YLKFVESHGLPETSIRVYRRYLKVAPEA-------------RE---------------------EYIE-----YLAKSDR 184 (835)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCHHH-------------HH---------------------HHHH-----HHHhccc
Confidence 6666667777778887775555433221 11 1100 0011133
Q ss_pred hhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHH------hcCHHHHHHHH
Q 003047 271 LSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLL------TRNLKHAKREV 344 (854)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~------~~~~~~A~~el 344 (854)
+.|++-.+..++. .... ++..+. .+..++..-..+..+ .-+.++ -+
T Consensus 185 ~~eaa~~la~vln--~d~f-------------------~sk~gk----Sn~qlw~elcdlis~~p~~~~slnvda---ii 236 (835)
T KOG2047|consen 185 LDEAAQRLATVLN--QDEF-------------------VSKKGK----SNHQLWLELCDLISQNPDKVQSLNVDA---II 236 (835)
T ss_pred hHHHHHHHHHhcC--chhh-------------------hhhccc----chhhHHHHHHHHHHhCcchhcccCHHH---HH
Confidence 4444444444430 0000 001111 112222222222111 112332 22
Q ss_pred HHHHHhcCCCCCHHH-HHHHHHHHHHhcCHHHHHHHHHHhhhc--cCCCccHHHHHHH-----HHHHHHcC---------
Q 003047 345 KLAMNIARGKDSSLA-LFLKSQLEYARRNHRKAIKLLLALSNR--TEMGISSMFNNNL-----GCIYYQLA--------- 407 (854)
Q Consensus 345 k~al~~~~~P~~~~a-~~lla~ly~~~g~~~kAl~~l~kal~~--~dp~~~a~~~nnL-----G~iy~~~g--------- 407 (854)
+.-+... ||...- +.-+|..|...|.+++|-.+|++++.. .-. +...++... -++-..++
T Consensus 237 R~gi~rf--tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvr-DFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ 313 (835)
T KOG2047|consen 237 RGGIRRF--TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVR-DFTQIFDAYAQFEESCVAAKMELADEESGNE 313 (835)
T ss_pred HhhcccC--cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehh-hHHHHHHHHHHHHHHHHHHHHhhhhhcccCh
Confidence 3334444 555443 467999999999999999999999873 111 112222211 12222222
Q ss_pred ----CHHHHHHHHHHHHHhchh------cccC----------------Cc------cc----cc--cccCCccHHHHHHH
Q 003047 408 ----KYHTSSVFLSKALSNSAS------LRKD----------------KP------LK----LL--TFSQDKSLLITYNC 449 (854)
Q Consensus 408 ----~~~eAi~~f~kAL~~~~~------l~~~----------------~~------l~----~~--~~~~~~~~~~~~nL 449 (854)
+.+....-|+..+..-+- ++++ ++ +. .+ .........+|-.+
T Consensus 314 ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~f 393 (835)
T KOG2047|consen 314 EDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEF 393 (835)
T ss_pred hhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHH
Confidence 123333444444442110 0000 00 00 00 00111234678888
Q ss_pred HHHHHHCCCcHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeecc
Q 003047 450 GLQYLACGKPVLAARCFQKSSLVFYKQ----PLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMED 525 (854)
Q Consensus 450 G~~ll~~Gk~eeAl~~y~kAL~l~P~~----~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~ 525 (854)
|..|...|+.+.|...|++++...-.. +.+|..-|+.-. +.
T Consensus 394 aklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemEl---rh-------------------------------- 438 (835)
T KOG2047|consen 394 AKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMEL---RH-------------------------------- 438 (835)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHH---hh--------------------------------
Confidence 888888888888988888888876433 344555554322 11
Q ss_pred CCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccc
Q 003047 526 GFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLS 605 (854)
Q Consensus 526 ~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (854)
...+.|..+.+.|...=....... +
T Consensus 439 -------------------------~~~~~Al~lm~~A~~vP~~~~~~~--y---------------------------- 463 (835)
T KOG2047|consen 439 -------------------------ENFEAALKLMRRATHVPTNPELEY--Y---------------------------- 463 (835)
T ss_pred -------------------------hhHHHHHHHHHhhhcCCCchhhhh--h----------------------------
Confidence 013557888887776532211000 0
Q ss_pred cccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-
Q 003047 606 SLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE- 684 (854)
Q Consensus 606 ~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~- 684 (854)
.++.+ +|+ ...-..-++...+...-+.|=+..-...|.+++.
T Consensus 464 --------------d~~~p-----------vQ~------------rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL 506 (835)
T KOG2047|consen 464 --------------DNSEP-----------VQA------------RLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL 506 (835)
T ss_pred --------------cCCCc-----------HHH------------HHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 00000 000 0000113466667777788999999999999997
Q ss_pred CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCC
Q 003047 685 LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPED 764 (854)
Q Consensus 685 ~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 764 (854)
.-..|..-.+.|.+.. .-.-++||-+.|++.++ + |+-+++.+
T Consensus 507 riaTPqii~NyAmfLE-----eh~yfeesFk~YErgI~--L-----Fk~p~v~d-------------------------- 548 (835)
T KOG2047|consen 507 RIATPQIIINYAMFLE-----EHKYFEESFKAYERGIS--L-----FKWPNVYD-------------------------- 548 (835)
T ss_pred hcCCHHHHHHHHHHHH-----hhHHHHHHHHHHHcCCc--c-----CCCccHHH--------------------------
Confidence 3345556666665322 45668999999999983 2 22222222
Q ss_pred CCCCCCCCchhhhHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHh-cCC
Q 003047 765 SRDTMFPKPEEARGTL-YVNIAAMFAMQGEFERAHHFVTQALSILPRS--TEATLTAIYVDLMLGKSQEALAKLKY-CNH 840 (854)
Q Consensus 765 p~~~~p~~~~~a~a~~-~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~--~~a~~l~~y~~L~~G~~~eA~~~lk~-~~~ 840 (854)
.+. |..-...-.-.-.++.|..+|+|||..+|.. ..+.++.+-++-.-|-...|+.++++ ...
T Consensus 549 -------------iW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 549 -------------IWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred -------------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 111 2112222223368999999999999999843 34555666666677999999999988 554
Q ss_pred Cc
Q 003047 841 VR 842 (854)
Q Consensus 841 ~~ 842 (854)
|+
T Consensus 616 v~ 617 (835)
T KOG2047|consen 616 VK 617 (835)
T ss_pred CC
Confidence 43
No 236
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.86 E-value=0.011 Score=41.86 Aligned_cols=33 Identities=18% Similarity=0.095 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC
Q 003047 444 LITYNCGLQYLACGKPVLAARCFQKSSLVFYKQ 476 (854)
Q Consensus 444 ~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~ 476 (854)
+++|++|.++...|++++|...|++++..+|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 468999999999999999999999999999985
No 237
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.85 E-value=0.18 Score=51.47 Aligned_cols=102 Identities=16% Similarity=0.075 Sum_probs=82.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhh
Q 003047 660 ANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQW 739 (854)
Q Consensus 660 ~~la~v~l~lg~~~~Al~~~~~lL~~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~ 739 (854)
..+|-+..+-|+++.|+...+.+|..|.+ +.++.++.+-+|..++.++++++|+..|+.... .+
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~D-e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~------------- 156 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKD-ENLKALAALRLARVQLQQKKADAALKTLDTIKE--ES------------- 156 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchh-HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--cc-------------
Confidence 35577888999999999999999988775 488899999999999999999999998877661 10
Q ss_pred hHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 003047 740 RVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTE 813 (854)
Q Consensus 740 ~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~ 813 (854)
| .+..---.|.++...|+-++|+..|.+++...++.+.
T Consensus 157 ----------------------------w--------~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~ 194 (207)
T COG2976 157 ----------------------------W--------AAIVAELRGDILLAKGDKQEARAAYEKALESDASPAA 194 (207)
T ss_pred ----------------------------H--------HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHH
Confidence 1 1222334688999999999999999999998866543
No 238
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.78 E-value=4.1 Score=45.13 Aligned_cols=139 Identities=10% Similarity=-0.046 Sum_probs=101.0
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCC---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-chhc-cc
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMG---ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSN-SASL-RK 428 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~---~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~-~~~l-~~ 428 (854)
......++..+.+.-..|+++-|...+.++... .+. ..+.+..-.+.+....|+..+|+..++..+.. .... ..
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~-~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQL-NPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhcc-CCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 455577888999999999999999999998872 210 12445666788999999999999999998883 2110 00
Q ss_pred C--Ccc--------c------cccccCCccHHHHHHHHHHHHHC------CCcHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 003047 429 D--KPL--------K------LLTFSQDKSLLITYNCGLQYLAC------GKPVLAARCFQKSSLVFYKQPLLWLRLAEC 486 (854)
Q Consensus 429 ~--~~l--------~------~~~~~~~~~~~~~~nLG~~ll~~------Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~ 486 (854)
. ..+ . .........+.+++.+|.-.... +..++++..|.+++.++|+...+|+.+|..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 0 000 0 00111122466777888888888 789999999999999999999999999999
Q ss_pred HHHHHhc
Q 003047 487 CLMALEK 493 (854)
Q Consensus 487 ~i~~~~~ 493 (854)
+......
T Consensus 302 ~~~~~~~ 308 (352)
T PF02259_consen 302 NDKLLES 308 (352)
T ss_pred HHHHHHh
Confidence 8865553
No 239
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.78 E-value=0.17 Score=59.43 Aligned_cols=141 Identities=16% Similarity=0.039 Sum_probs=102.5
Q ss_pred HhcCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHH-------H--HhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 333 LTRNLKHAKREVKLAMNIARGKDSSLA-LFLKSQLE-------Y--ARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 333 ~~~~~~~A~~elk~al~~~~~P~~~~a-~~lla~ly-------~--~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
..|+-+.+++.+..+.+-. +-..+-+ +.+++... . .....+.|.+++..... .-|+ .+..+...|.+
T Consensus 200 F~gdR~~GL~~L~~~~~~~-~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~-~yP~-s~lfl~~~gR~ 276 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKSE-NIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK-RYPN-SALFLFFEGRL 276 (468)
T ss_pred cCCcHHHHHHHHHHHhccC-CcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH-hCCC-cHHHHHHHHHH
Confidence 3578888888888877633 1122221 22222111 1 35677889999999998 6884 57777778999
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHH
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLR 482 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~ 482 (854)
+...|+.++|+..|++++....+++ .-..-.++.+|.+++.+++|++|.++|.+.++...-....+..
T Consensus 277 ~~~~g~~~~Ai~~~~~a~~~q~~~~------------Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y 344 (468)
T PF10300_consen 277 ERLKGNLEEAIESFERAIESQSEWK------------QLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAY 344 (468)
T ss_pred HHHhcCHHHHHHHHHHhccchhhHH------------hHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHH
Confidence 9999999999999999996422111 0135678899999999999999999999999987776666666
Q ss_pred HHHHHH
Q 003047 483 LAECCL 488 (854)
Q Consensus 483 La~~~i 488 (854)
++-||.
T Consensus 345 ~~a~c~ 350 (468)
T PF10300_consen 345 LAAACL 350 (468)
T ss_pred HHHHHH
Confidence 666665
No 240
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.75 E-value=0.16 Score=55.40 Aligned_cols=136 Identities=15% Similarity=0.099 Sum_probs=103.4
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHh-cCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHc
Q 003047 328 VRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYAR-RNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQL 406 (854)
Q Consensus 328 ~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~-g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~ 406 (854)
.++....+.++.|...++++.+.. +-....|...|.+.+.. ++.+.|.++|+..++ .-|. ...+|......+...
T Consensus 8 m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk-~f~~-~~~~~~~Y~~~l~~~ 83 (280)
T PF05843_consen 8 MRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLK-KFPS-DPDFWLEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH-HHTT--HHHHHHHHHHHHHT
T ss_pred HHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-HCCC-CHHHHHHHHHHHHHh
Confidence 455666677999999999999666 77788999999998885 555559999999999 5674 567787778888999
Q ss_pred CCHHHHHHHHHHHHHhchhcccCCccccccccCCc-cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHH
Q 003047 407 AKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDK-SLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWL 481 (854)
Q Consensus 407 g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~-~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~ 481 (854)
++.+.|-..|++++..++ ... ...+|-..-..-...|+.+.....++++.++.|+...++.
T Consensus 84 ~d~~~aR~lfer~i~~l~--------------~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 84 NDINNARALFERAISSLP--------------KEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp T-HHHHHHHHHHHCCTSS--------------CHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred CcHHHHHHHHHHHHHhcC--------------chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence 999999999999998732 111 2345655566667779999999999999999999666554
No 241
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.45 Score=51.63 Aligned_cols=146 Identities=15% Similarity=0.035 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
..+.+++-.+..+++.+|...++.++... |++.++.+.++..|...|+.+.|..+|..... ... ...+..
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~-~~~---~~~~~~---- 205 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPL-QAQ---DKAAHG---- 205 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcc-cch---hhHHHH----
Confidence 45567778889999999999999999999 99999999999999999999999999887654 222 122211
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC--HHHH
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQ--PLLW 480 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~--~~aw 480 (854)
....++.+.++=..- +. ..+.-..-..|.+.++-+.++..|...|++++|++.+-..+..+.+. ..+.
T Consensus 206 ------l~a~i~ll~qaa~~~-~~---~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~R 275 (304)
T COG3118 206 ------LQAQIELLEQAAATP-EI---QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEAR 275 (304)
T ss_pred ------HHHHHHHHHHHhcCC-CH---HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHH
Confidence 111233333332220 00 00000000134577889999999999999999999999999887544 5567
Q ss_pred HHHHHHHH
Q 003047 481 LRLAECCL 488 (854)
Q Consensus 481 ~~La~~~i 488 (854)
-+|-++..
T Consensus 276 k~lle~f~ 283 (304)
T COG3118 276 KTLLELFE 283 (304)
T ss_pred HHHHHHHH
Confidence 77776665
No 242
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.41 E-value=9.2 Score=46.55 Aligned_cols=235 Identities=16% Similarity=0.151 Sum_probs=144.5
Q ss_pred hhhHHHHHHHHHHHH-HhhcHHHHHHHHHHhhhccCC--CchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhccc
Q 003047 143 FDVSVAKLNIAVIWF-HLHEYAKALSVLEPLYQNIEP--IDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGC 219 (854)
Q Consensus 143 ~~~~~~~~n~a~~~~-~~~~y~~A~~~~e~l~~~~~~--~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~ 219 (854)
...+..++-+|.+|+ ...+++.|..+++|.....+. ..|... ..-++++.+|...+... |. ..+.+.+...+
T Consensus 56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~-~~~~ll~~i~~~~~~~~-a~---~~l~~~I~~~~ 130 (608)
T PF10345_consen 56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKF-RCQFLLARIYFKTNPKA-AL---KNLDKAIEDSE 130 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHH-HHHHHHHHHHHhcCHHH-HH---HHHHHHHHHHh
Confidence 457788999998877 999999999999998775543 233222 23455678888888777 65 55666554321
Q ss_pred ccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCC
Q 003047 220 VNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVG 299 (854)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (854)
.. ..
T Consensus 131 ~~--------------------------------------------------------------------~~-------- 134 (608)
T PF10345_consen 131 TY--------------------------------------------------------------------GH-------- 134 (608)
T ss_pred cc--------------------------------------------------------------------Cc--------
Confidence 00 00
Q ss_pred CccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHH----HHHHHHHHHHhcCHHH
Q 003047 300 LSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLA----LFLKSQLEYARRNHRK 375 (854)
Q Consensus 300 ~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a----~~lla~ly~~~g~~~k 375 (854)
....-.+++.|+.+++..++...|++.++........+.++.. .+..+.++...+..++
T Consensus 135 -----------------~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 135 -----------------SAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred -----------------hhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 0011234556777887778999999999999988732344433 3456888889999999
Q ss_pred HHHHHHHhhhc---c--CCC-c--cHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhchhccc--------CCc-ccc--
Q 003047 376 AIKLLLALSNR---T--EMG-I--SSMFNNNL--GCIYYQLAKYHTSSVFLSKALSNSASLRK--------DKP-LKL-- 434 (854)
Q Consensus 376 Al~~l~kal~~---~--dp~-~--~a~~~nnL--G~iy~~~g~~~eAi~~f~kAL~~~~~l~~--------~~~-l~~-- 434 (854)
+++.++++... . +|. . .-.++.-+ -+++...|++..+...+++.=..+..... ++. +++
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~ 277 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNI 277 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeec
Confidence 99999988542 1 110 0 12233323 44566778877776665554333222110 111 110
Q ss_pred -----------ccc---cCCc-cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCC
Q 003047 435 -----------LTF---SQDK-SLLITYNCGLQYLACGKPVLAARCFQKSSLVFYK 475 (854)
Q Consensus 435 -----------~~~---~~~~-~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~ 475 (854)
..+ +... ..-+++--|.+.+..+..++|.+++.+++..-.+
T Consensus 278 ~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~ 333 (608)
T PF10345_consen 278 GEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEK 333 (608)
T ss_pred ccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHH
Confidence 011 1111 1334455588899999988999999998875443
No 243
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.34 E-value=3.3 Score=46.98 Aligned_cols=151 Identities=13% Similarity=-0.074 Sum_probs=98.9
Q ss_pred HHHHHHH---hcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHh---------cCHHHHHHHHHHhhhccCCCccHH
Q 003047 327 KVRFLLL---TRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYAR---------RNHRKAIKLLLALSNRTEMGISSM 394 (854)
Q Consensus 327 K~~lyl~---~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~---------g~~~kAl~~l~kal~~~dp~~~a~ 394 (854)
.+..+-. .|+.++|+..+..++.... +.+++.+.+.|.+|... ...++|+..|.++.. .+|+. .
T Consensus 185 yafALnRrn~~gdre~Al~il~~~l~~~~-~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe-~~~~~--Y 260 (374)
T PF13281_consen 185 YAFALNRRNKPGDREKALQILLPVLESDE-NPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE-IEPDY--Y 260 (374)
T ss_pred HHHHHhhcccCCCHHHHHHHHHHHHhccC-CCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc-CCccc--c
Confidence 3444445 7899999999999444431 89999999999998632 347899999999999 66743 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhc-ccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc
Q 003047 395 FNNNLGCIYYQLAKYHTSSVFLSKALSNSASL-RKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVF 473 (854)
Q Consensus 395 ~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l-~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~ 473 (854)
.-.|++.++.-.|...+.....++.......+ ..... .....+.=.+-.+..+....|++++|.+++++++.+.
T Consensus 261 ~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~-----~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 261 SGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS-----LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred chHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc-----ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 45678888888887666665555544221111 10000 0011122222355778888999999999999999998
Q ss_pred CCCHHHHHHHHHH
Q 003047 474 YKQPLLWLRLAEC 486 (854)
Q Consensus 474 P~~~~aw~~La~~ 486 (854)
|..-....-+.++
T Consensus 336 ~~~W~l~St~~ni 348 (374)
T PF13281_consen 336 PPAWELESTLENI 348 (374)
T ss_pred CcchhHHHHHHHH
Confidence 7744433333333
No 244
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.31 E-value=0.039 Score=63.76 Aligned_cols=108 Identities=19% Similarity=0.016 Sum_probs=87.5
Q ss_pred HHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccH
Q 003047 364 SQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSL 443 (854)
Q Consensus 364 a~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~ 443 (854)
|..+-..|+...|++++..++. ..|.....-+.+|+.+...-|-...|-..+.++|.+. ...+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~-~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~----------------~sep 676 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALN-LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN----------------SSEP 676 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhc-cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc----------------ccCc
Confidence 4444578999999999999988 4554334456778888888888889999999999982 2235
Q ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 444 LITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 444 ~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
..+|.+|.+++.+.+.+.|++.|++|++++|+++..-..|-.+..
T Consensus 677 l~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 677 LTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred hHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 678899999999999999999999999999999998777665444
No 245
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.23 E-value=0.064 Score=43.39 Aligned_cols=43 Identities=21% Similarity=0.291 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 003047 780 LYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVD 822 (854)
Q Consensus 780 ~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~ 822 (854)
-+|.||..+...|+|++|.++++.+|++.|++..+..+...|+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 3678999999999999999999999999999998888877764
No 246
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.99 E-value=0.045 Score=40.29 Aligned_cols=30 Identities=17% Similarity=0.109 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHHHhcC
Q 003047 445 ITYNCGLQYLACGKPVLAARCFQKSSLVFY 474 (854)
Q Consensus 445 ~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P 474 (854)
+|.+||.+|...|++++|+++|+++|.+.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 478999999999999999999999765543
No 247
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.94 E-value=0.032 Score=37.65 Aligned_cols=33 Identities=24% Similarity=0.202 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC
Q 003047 444 LITYNCGLQYLACGKPVLAARCFQKSSLVFYKQ 476 (854)
Q Consensus 444 ~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~ 476 (854)
.+++++|.+++..|++++|..+|++++.+.|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 468899999999999999999999999998863
No 248
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.82 E-value=0.044 Score=36.92 Aligned_cols=33 Identities=18% Similarity=0.431 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003047 779 TLYVNIAAMFAMQGEFERAHHFVTQALSILPRS 811 (854)
Q Consensus 779 ~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~ 811 (854)
..++++|.++..+|++++|..++++++++.|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 357899999999999999999999999998863
No 249
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.76 E-value=11 Score=43.80 Aligned_cols=138 Identities=13% Similarity=0.111 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHH-HHhCCCChhHHHHHHHHHHHHHHHHH
Q 003047 25 SVTATLAKEAALYFQSR--KFDECLDLLKQLLDKKPDD---PKILHNIAIAEY-FRDGCTDPKKLLEALNNVKNKSEELA 98 (854)
Q Consensus 25 ~~~~~l~~~a~~~~~~g--~y~~Al~~l~~~l~~~~~~---~~~l~nla~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~ 98 (854)
++++.|..-|.-+-..| +...|+++++-.+...|.+ ++..-.||-+-+ |..+ +.-+-..++++.-..
T Consensus 5 Ava~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N------~elAksHLekA~~i~- 77 (629)
T KOG2300|consen 5 AVAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKN------VELAKSHLEKAWLIS- 77 (629)
T ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhcc------HHHHHHHHHHHHHHH-
Confidence 67888888887777778 8999999999999987664 344444554433 2222 222334444444110
Q ss_pred hhhcccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhh-cHHHHHHHHHHhhhccC
Q 003047 99 RATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLH-EYAKALSVLEPLYQNIE 177 (854)
Q Consensus 99 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~-~y~~A~~~~e~l~~~~~ 177 (854)
+ .||+-| | ..-..+--++.+|.+.. .+..|-..+.+.+..-+
T Consensus 78 ----~------~ip~fy-------------------------d--vKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq 120 (629)
T KOG2300|consen 78 ----K------SIPSFY-------------------------D--VKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQ 120 (629)
T ss_pred ----c------ccccHH-------------------------h--hhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhc
Confidence 0 011111 1 12234555688888777 78888889998888555
Q ss_pred CCchhhHHHHHHHHHHHHHHccCHHHHHHH
Q 003047 178 PIDETTALQICLLLLDVALACHDAFRSADV 207 (854)
Q Consensus 178 ~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~ 207 (854)
.+. +...+..|-|+++.....++.-|++.
T Consensus 121 ~~p-~wsckllfQLaql~~idkD~~sA~el 149 (629)
T KOG2300|consen 121 SVP-YWSCKLLFQLAQLHIIDKDFPSALEL 149 (629)
T ss_pred CCc-hhhHHHHHHHHHHHhhhccchhHHHH
Confidence 443 44555667788999999999999864
No 250
>PRK10941 hypothetical protein; Provisional
Probab=94.50 E-value=0.2 Score=54.33 Aligned_cols=83 Identities=17% Similarity=0.081 Sum_probs=74.2
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCcc
Q 003047 765 SRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKY-CNHVRF 843 (854)
Q Consensus 765 p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~-~~~~~~ 843 (854)
|.+..|-++.+.-..+..||-.+|...+++++|.+|.+..+.+.|++++-+.-+++++.++|.+..|..-|+. ..+-|.
T Consensus 168 ~~~L~~a~~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 168 NEDLDEADNIEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 4445566777778889999999999999999999999999999999999999999999999999999999988 788888
Q ss_pred cccc
Q 003047 844 LPSG 847 (854)
Q Consensus 844 ~~~~ 847 (854)
+|.-
T Consensus 248 dp~a 251 (269)
T PRK10941 248 DPIS 251 (269)
T ss_pred chhH
Confidence 8853
No 251
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.37 E-value=0.07 Score=37.63 Aligned_cols=32 Identities=16% Similarity=0.368 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003047 780 LYVNIAAMFAMQGEFERAHHFVTQALSILPRS 811 (854)
Q Consensus 780 ~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~ 811 (854)
+++++|.++..+|++++|.+.+++++..-|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 57899999999999999999999999999975
No 252
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=94.13 E-value=1.5 Score=47.69 Aligned_cols=126 Identities=15% Similarity=-0.005 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcC-----
Q 003047 337 LKHAKREVKLAMNIARGKDSSLALFLKSQLEYA----RRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLA----- 407 (854)
Q Consensus 337 ~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~----~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g----- 407 (854)
..+|..-++...+ ..++.+.+.+|.+|.. ..++.+|.++|.++.....+ ......+++|.+|..-+
T Consensus 93 ~~~A~~~~~~~a~----~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~-~a~~~~~~l~~~~~~g~~~~~~ 167 (292)
T COG0790 93 KTKAADWYRCAAA----DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNV-EAALAMYRLGLAYLSGLQALAV 167 (292)
T ss_pred HHHHHHHHHHHhh----cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHHHcChhhhcc
Confidence 4556666653333 4588899999999997 55999999999999884233 11233677999987642
Q ss_pred --CHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHhcCCCHHHHH
Q 003047 408 --KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLA----CGKPVLAARCFQKSSLVFYKQPLLWL 481 (854)
Q Consensus 408 --~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~----~Gk~eeAl~~y~kAL~l~P~~~~aw~ 481 (854)
+...|+.+|.++-.. ....+.+++|.+|.. ..++++|+..|.++.+... ...++
T Consensus 168 ~~~~~~A~~~~~~aa~~------------------~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~ 227 (292)
T COG0790 168 AYDDKKALYLYRKAAEL------------------GNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACY 227 (292)
T ss_pred cHHHHhHHHHHHHHHHh------------------cCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHH
Confidence 233788888888776 245788899988865 3468999999999999888 88899
Q ss_pred HHHHHHH
Q 003047 482 RLAECCL 488 (854)
Q Consensus 482 ~La~~~i 488 (854)
.++ +..
T Consensus 228 ~~~-~~~ 233 (292)
T COG0790 228 NLG-LMY 233 (292)
T ss_pred HHH-HHH
Confidence 998 544
No 253
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.11 E-value=0.098 Score=38.90 Aligned_cols=33 Identities=24% Similarity=0.277 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 003047 393 SMFNNNLGCIYYQLAKYHTSSVFLSKALSNSAS 425 (854)
Q Consensus 393 a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~ 425 (854)
+.++++||.+|..+|++++|+.++++++.+...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 457899999999999999999999999998443
No 254
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.07 E-value=2 Score=45.24 Aligned_cols=146 Identities=21% Similarity=0.226 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhh
Q 003047 26 VTATLAKEAALYFQSRKFDECLDLLKQLLDKKPD----DPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARAT 101 (854)
Q Consensus 26 ~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~----~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 101 (854)
.+.+-+.+|...|.+++-.+|.+.++++.++-.. .-.+.|.+-++++|-.+ ..++.+++...+.+.+-..
T Consensus 72 Daat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsd---l~d~ekaI~~YE~Aae~yk--- 145 (288)
T KOG1586|consen 72 DAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESD---LQDFEKAIAHYEQAAEYYK--- 145 (288)
T ss_pred hHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhh---HHHHHHHHHHHHHHHHHHc---
Confidence 3456677888888888888888888888887322 23445555566776654 3444556655555553210
Q ss_pred cccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCch
Q 003047 102 GEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDE 181 (854)
Q Consensus 102 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e 181 (854)
.++.. + ..| .-+...|..--.++||.+||++||++.+. .++.
T Consensus 146 ~ees~-----------------------------s------sAN-KC~lKvA~yaa~leqY~~Ai~iyeqva~~--s~~n 187 (288)
T KOG1586|consen 146 GEESV-----------------------------S------SAN-KCLLKVAQYAAQLEQYSKAIDIYEQVARS--SLDN 187 (288)
T ss_pred chhhh-----------------------------h------hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccc
Confidence 00000 0 001 12234466677899999999999999884 3444
Q ss_pred hh---HHHHHHH-HHHHHHHccCHHHHHHHHHHHHHhh
Q 003047 182 TT---ALQICLL-LLDVALACHDAFRSADVLIYLEKAF 215 (854)
Q Consensus 182 ~~---~~~~~l~-l~~vy~~~~~~~kA~~~l~~lek~l 215 (854)
.+ ..+-+|+ -+..++...+.--+-..|..|+...
T Consensus 188 ~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 188 NLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELD 225 (288)
T ss_pred hHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence 32 3344444 3355555566665655555555443
No 255
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.06 E-value=1.2 Score=45.33 Aligned_cols=71 Identities=20% Similarity=0.263 Sum_probs=56.6
Q ss_pred chhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhc
Q 003047 142 EFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSV 217 (854)
Q Consensus 142 ~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~ 217 (854)
+.+.-..+..+|..|+..|++++|++.|.++...- ......+.+|+.++.|.+..+++..+.. +++|+...
T Consensus 32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~--~~~~~~id~~l~~irv~i~~~d~~~v~~---~i~ka~~~ 102 (177)
T PF10602_consen 32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYC--TSPGHKIDMCLNVIRVAIFFGDWSHVEK---YIEKAESL 102 (177)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc--CCHHHHHHHHHHHHHHHHHhCCHHHHHH---HHHHHHHH
Confidence 45566789999999999999999999999987743 2233456689999999999999999974 55655443
No 256
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.03 E-value=0.65 Score=50.99 Aligned_cols=125 Identities=15% Similarity=-0.017 Sum_probs=93.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhH
Q 003047 663 AYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRV 741 (854)
Q Consensus 663 a~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~ 741 (854)
+.+....|++-+|-.-..++|. .|.+--+.++--. |+..+|+...-...+++.+ +.
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~-----a~fy~G~~~~~k~ai~kIi--p~---------------- 166 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHD-----AHFYNGNQIGKKNAIEKII--PK---------------- 166 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhh-----HHHhccchhhhhhHHHHhc--cc----------------
Confidence 4457788999999888999997 6776545444332 5556777777777777776 21
Q ss_pred hhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 003047 742 EKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYV 821 (854)
Q Consensus 742 ~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~ 821 (854)
|.|.-|- ..-++--+|..+.+-|-|++|++..+++++++|.+..+....+.|
T Consensus 167 --------------------------wn~dlp~--~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHV 218 (491)
T KOG2610|consen 167 --------------------------WNADLPC--YSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHV 218 (491)
T ss_pred --------------------------cCCCCcH--HHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHH
Confidence 2222111 344455577778888999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHhc
Q 003047 822 DLMLGKSQEALAKLKYC 838 (854)
Q Consensus 822 ~L~~G~~~eA~~~lk~~ 838 (854)
+-..|++.++.+...+.
T Consensus 219 lem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 219 LEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHhcchhhhHHHHHHhc
Confidence 99999999999988663
No 257
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.00 E-value=0.75 Score=55.23 Aligned_cols=130 Identities=22% Similarity=0.158 Sum_probs=98.7
Q ss_pred cCHHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHHHHhc-----CHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHc
Q 003047 335 RNLKHAKREVKLAMNI---ARGKDSSLALFLKSQLEYARR-----NHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQL 406 (854)
Q Consensus 335 ~~~~~A~~elk~al~~---~~~P~~~~a~~lla~ly~~~g-----~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~ 406 (854)
.+++.|+..++.+... ...-.++.+.+.+|.+|+... ++++|+++|.++-.... +...+.+|.+|..-
T Consensus 263 ~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~----~~a~~~lg~~~~~g 338 (552)
T KOG1550|consen 263 QDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN----PDAQYLLGVLYETG 338 (552)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC----chHHHHHHHHHHcC
Confidence 4788888888887661 000124567888999999853 78999999999988322 34566799999865
Q ss_pred C---CHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHhcCCCHHH
Q 003047 407 A---KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLAC----GKPVLAARCFQKSSLVFYKQPLL 479 (854)
Q Consensus 407 g---~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~----Gk~eeAl~~y~kAL~l~P~~~~a 479 (854)
. ++..|.+||..|-.. ....++++++.||..- .+.+.|+.+|.++.+.. ++.+
T Consensus 339 ~~~~d~~~A~~yy~~Aa~~------------------G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A 398 (552)
T KOG1550|consen 339 TKERDYRRAFEYYSLAAKA------------------GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSA 398 (552)
T ss_pred CccccHHHHHHHHHHHHHc------------------CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--Chhh
Confidence 5 578999999999886 2467888999998754 45899999999999988 6677
Q ss_pred HHHHHHHHH
Q 003047 480 WLRLAECCL 488 (854)
Q Consensus 480 w~~La~~~i 488 (854)
.+.++.++.
T Consensus 399 ~~~~~~~~~ 407 (552)
T KOG1550|consen 399 AYLLGAFYE 407 (552)
T ss_pred HHHHHHHHH
Confidence 777776665
No 258
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.99 E-value=7.2 Score=41.26 Aligned_cols=143 Identities=17% Similarity=0.198 Sum_probs=90.0
Q ss_pred hhHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhc----CC-CCHHH-HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 003047 23 VLSVTATLAKEAALYFQ-SRKFDECLDLLKQLLDK----KP-DDPKI-LHNIAIAEYFRDGCTDPKKLLEALNNVKNKSE 95 (854)
Q Consensus 23 ~~~~~~~l~~~a~~~~~-~g~y~~Al~~l~~~l~~----~~-~~~~~-l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~ 95 (854)
-..++..|+.+|-.-|. ..+++.|=..|-++-+. +. .|... +-..+.+ |++ .+..++.+.+.++++
T Consensus 29 k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~c--ykk-----~~~~eAv~cL~~aie 101 (288)
T KOG1586|consen 29 KYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANC--YKK-----VDPEEAVNCLEKAIE 101 (288)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH--hhc-----cChHHHHHHHHHHHH
Confidence 56788888888776554 57888898888888774 22 23322 3333322 222 344458888888886
Q ss_pred HHHhhhcccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchh-hHHHHHHHHHHHHHh-hcHHHHHHHHHHhh
Q 003047 96 ELARATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFD-VSVAKLNIAVIWFHL-HEYAKALSVLEPLY 173 (854)
Q Consensus 96 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~n~a~~~~~~-~~y~~A~~~~e~l~ 173 (854)
...+ +++.. -+-...-+|.+|-.- .++++||.+||++-
T Consensus 102 Iyt~----------------------------------------~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aa 141 (288)
T KOG1586|consen 102 IYTD----------------------------------------MGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAA 141 (288)
T ss_pred HHHh----------------------------------------hhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHH
Confidence 5421 11111 122444568888776 99999999999998
Q ss_pred hccCCCchhh-HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q 003047 174 QNIEPIDETT-ALQICLLLLDVALACHDAFRSADVLIYLEKAF 215 (854)
Q Consensus 174 ~~~~~~~e~~-~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l 215 (854)
..+..-+-.. +-+.++-.++.--++++|.+||++ ||+.-
T Consensus 142 e~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~i---yeqva 181 (288)
T KOG1586|consen 142 EYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDI---YEQVA 181 (288)
T ss_pred HHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 8654433332 444333455778889999999965 46543
No 259
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.87 E-value=1.4 Score=44.38 Aligned_cols=115 Identities=12% Similarity=0.050 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhh
Q 003047 657 ALLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDC 736 (854)
Q Consensus 657 ~~l~~la~v~l~lg~~~~Al~~~~~lL~~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~ 736 (854)
-+++..+.+...-|+-..|+.++.++-...+.|...+-++++-.+..|+..|-|++-...+++.-. +
T Consensus 95 LA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~---d---------- 161 (221)
T COG4649 95 LARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAG---D---------- 161 (221)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccC---C----------
Confidence 345666888999999999999999999888888999999999999999999999988777776552 0
Q ss_pred hhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 003047 737 EQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATL 816 (854)
Q Consensus 737 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~ 816 (854)
++|- +..+.--||.+-..-|++..|++.|.++.+ +...|..+.
T Consensus 162 --------------------------~n~m----------R~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnir 204 (221)
T COG4649 162 --------------------------GNPM----------RHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIR 204 (221)
T ss_pred --------------------------CChh----------HHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHH
Confidence 0122 455566688899999999999999999887 444455555
Q ss_pred HHHHH
Q 003047 817 TAIYV 821 (854)
Q Consensus 817 l~~y~ 821 (854)
.++.+
T Consensus 205 qRAq~ 209 (221)
T COG4649 205 QRAQI 209 (221)
T ss_pred HHHHH
Confidence 55555
No 260
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.85 E-value=2.6 Score=45.97 Aligned_cols=163 Identities=17% Similarity=0.115 Sum_probs=106.8
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCc
Q 003047 149 KLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSM 228 (854)
Q Consensus 149 ~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~ 228 (854)
-+-.+.-....+++.+|...|..+++..+...+ +.+.++.+|+..|+.+.|..+|+.+- .. ...+
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~-----~~~~la~~~l~~g~~e~A~~iL~~lP----~~--~~~~---- 201 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENSE-----AKLLLAECLLAAGDVEAAQAILAALP----LQ--AQDK---- 201 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCcccch-----HHHHHHHHHHHcCChHHHHHHHHhCc----cc--chhh----
Confidence 345567789999999999999999997766655 68889999999999999987653221 10 0000
Q ss_pred ccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhh
Q 003047 229 GQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRT 308 (854)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 308 (854)
..
T Consensus 202 --------------------------~~---------------------------------------------------- 203 (304)
T COG3118 202 --------------------------AA---------------------------------------------------- 203 (304)
T ss_pred --------------------------HH----------------------------------------------------
Confidence 00
Q ss_pred hhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccC
Q 003047 309 LVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTE 388 (854)
Q Consensus 309 ~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~d 388 (854)
.+ ... +..++.+.....+ ..++++.+..+ |++..+-+.+|..+...|+++.|++.+-.++++..
T Consensus 204 -------~~-l~a-----~i~ll~qaa~~~~-~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 204 -------HG-LQA-----QIELLEQAAATPE-IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred -------HH-HHH-----HHHHHHHHhcCCC-HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 00 001 1223333333332 24566778888 99999999999999999999999999999998411
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003047 389 MGISSMFNNNLGCIYYQLAKYHTSSVFLSKAL 420 (854)
Q Consensus 389 p~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL 420 (854)
......+.-.|-.++...|.-+.+...|++=|
T Consensus 268 ~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 268 GFEDGEARKTLLELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred cccCcHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 11112344445566666664444545455433
No 261
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=93.77 E-value=0.14 Score=41.48 Aligned_cols=40 Identities=10% Similarity=-0.159 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHH
Q 003047 444 LITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRL 483 (854)
Q Consensus 444 ~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~L 483 (854)
+.+|.++..+.++|+|++|..+.+.+|++.|+|..+..-.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 4678899999999999999999999999999998774433
No 262
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.64 E-value=1.3 Score=49.22 Aligned_cols=137 Identities=12% Similarity=-0.028 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhh-c-c-C---------
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARG--KDSSLALFLKSQLEYARRNHRKAIKLLLALSN-R-T-E--------- 388 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~--P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~-~-~-d--------- 388 (854)
..+.-+++....|.++-|...+.++...... +..+...+..+.+....|+..+|+..++..+. . . .
T Consensus 148 ~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~ 227 (352)
T PF02259_consen 148 TWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAEL 227 (352)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHH
Confidence 4555688999999999999999999886511 12567888999999999999999999988887 1 0 0
Q ss_pred --------------------CCccHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhchhcccCCccccccccCCcc
Q 003047 389 --------------------MGISSMFNNNLGCIYYQL------AKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKS 442 (854)
Q Consensus 389 --------------------p~~~a~~~nnLG~iy~~~------g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~ 442 (854)
....+.++..+|...... ++.++++.+|++++... +..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~----------------~~~ 291 (352)
T PF02259_consen 228 KSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLD----------------PSW 291 (352)
T ss_pred hhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhC----------------hhH
Confidence 012244555667766667 88889999999999983 334
Q ss_pred HHHHHHHHHHHHHCCC-----------------cHHHHHHHHHHHHhcCC
Q 003047 443 LLITYNCGLQYLACGK-----------------PVLAARCFQKSSLVFYK 475 (854)
Q Consensus 443 ~~~~~nLG~~ll~~Gk-----------------~eeAl~~y~kAL~l~P~ 475 (854)
..+|+..|..+...=. ...|+.+|-+++...++
T Consensus 292 ~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 292 EKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 5567777666554311 23488888888888887
No 263
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=93.64 E-value=0.65 Score=41.84 Aligned_cols=79 Identities=15% Similarity=0.084 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003047 340 AKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGI-SSMFNNNLGCIYYQLAKYHTSSVFLSK 418 (854)
Q Consensus 340 A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~-~a~~~nnLG~iy~~~g~~~eAi~~f~k 418 (854)
.+..++..+..+ |++..+.+.+|..++..|++++|++.+..+++ .++.. ...+.-.|-.++.-+|.-+.-..-|++
T Consensus 7 ~~~al~~~~a~~--P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~-~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 7 DIAALEAALAAN--PDDLDARYALADALLAAGDYEEALDQLLELVR-RDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC-C-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred cHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 456788899999 99999999999999999999999999999999 45432 234555566777777775555555555
Q ss_pred HHH
Q 003047 419 ALS 421 (854)
Q Consensus 419 AL~ 421 (854)
-|.
T Consensus 84 kL~ 86 (90)
T PF14561_consen 84 KLA 86 (90)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 264
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.31 E-value=0.16 Score=37.76 Aligned_cols=31 Identities=29% Similarity=0.473 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 003047 778 GTLYVNIAAMFAMQGEFERAHHFVTQALSIL 808 (854)
Q Consensus 778 a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~ 808 (854)
+..+.|||.+|..+|++++|+.++++++++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 4667999999999999999999999998863
No 265
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=93.21 E-value=2.2 Score=40.41 Aligned_cols=102 Identities=10% Similarity=0.043 Sum_probs=70.8
Q ss_pred HHHHHHhcCHHHHHHHHHHhhhc--cCCC--------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcc--cCCc
Q 003047 364 SQLEYARRNHRKAIKLLLALSNR--TEMG--------ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLR--KDKP 431 (854)
Q Consensus 364 a~ly~~~g~~~kAl~~l~kal~~--~dp~--------~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~--~~~~ 431 (854)
|.-.+.-|-|++|...|.++... .-|. ..+..+-.|...+..+|+|++++..-.++|.-+..-. ..+.
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde 95 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE 95 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc
Confidence 44556778899999999888762 1121 3355666788899999999999999999998643211 1110
Q ss_pred cccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh
Q 003047 432 LKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLV 472 (854)
Q Consensus 432 l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l 472 (854)
......+.++.+.++..+|++++|+..|+++-+.
T Consensus 96 -------GklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 96 -------GKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp -------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred -------chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 0113567899999999999999999999987654
No 266
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.18 E-value=0.92 Score=49.87 Aligned_cols=129 Identities=9% Similarity=-0.024 Sum_probs=95.9
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHH--HHHHHHHH
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFN--NNLGCIYY 404 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~--nnLG~iy~ 404 (854)
++-+..-.|++.+|-.+.+++++-. |.+.-++-.--..++.+|+...-...+++++..-+|+.+-..| -.++-.+.
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~--PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~ 186 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDY--PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE 186 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhC--chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH
Confidence 3445556899999999999999999 9999999989999999999999999999999842443333333 23455666
Q ss_pred HcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc
Q 003047 405 QLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVF 473 (854)
Q Consensus 405 ~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~ 473 (854)
..|-|++|.+.-++++++. +.+.=+...++.++...|++.++.+...+.-...
T Consensus 187 E~g~y~dAEk~A~ralqiN----------------~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~W 239 (491)
T KOG2610|consen 187 ECGIYDDAEKQADRALQIN----------------RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDW 239 (491)
T ss_pred HhccchhHHHHHHhhccCC----------------CcchHHHHHHHHHHHhcchhhhHHHHHHhcccch
Confidence 8899999999999999982 2223344455666667777777776666544433
No 267
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=92.93 E-value=0.78 Score=48.15 Aligned_cols=111 Identities=17% Similarity=0.079 Sum_probs=76.9
Q ss_pred hcCHHHHHHHHHHhhhc-----cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhc-ccC-CccccccccCCcc
Q 003047 370 RRNHRKAIKLLLALSNR-----TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASL-RKD-KPLKLLTFSQDKS 442 (854)
Q Consensus 370 ~g~~~kAl~~l~kal~~-----~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l-~~~-~~l~~~~~~~~~~ 442 (854)
...+++|++.|.-++-- ..|...+..+..++.+|..+|+.+....++++|+....+. ... .+. ..-..
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~-----~~~~~ 164 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPI-----EGMDE 164 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCC-----CCchH
Confidence 45666777766665531 2444457788889999999999888888888888874331 111 000 01124
Q ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCH-HHHHHHHH
Q 003047 443 LLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQP-LLWLRLAE 485 (854)
Q Consensus 443 ~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~-~aw~~La~ 485 (854)
..++|-+|....+.|++++|...|.+++.....+. .....+|.
T Consensus 165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 67889999999999999999999999988765544 34555553
No 268
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=92.72 E-value=0.14 Score=58.61 Aligned_cols=94 Identities=10% Similarity=0.013 Sum_probs=84.2
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHc
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQL 406 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~ 406 (854)
++.-.+.-+.++.|+.-+-++++++ |+.+.++-+.+..+...++|..|+.-+.++++ .+|. ...+|+..|.++.++
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie-~dP~-~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIE-LDPT-YIKAYVRRGTAVMAL 85 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhh-cCch-hhheeeeccHHHHhH
Confidence 3455667789999999999999999 99999999999999999999999999999999 7884 577888889999999
Q ss_pred CCHHHHHHHHHHHHHhch
Q 003047 407 AKYHTSSVFLSKALSNSA 424 (854)
Q Consensus 407 g~~~eAi~~f~kAL~~~~ 424 (854)
+++.+|..-|++...+.|
T Consensus 86 ~~~~~A~~~l~~~~~l~P 103 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAP 103 (476)
T ss_pred HHHHHHHHHHHHhhhcCc
Confidence 999999999999888744
No 269
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.69 E-value=0.06 Score=59.06 Aligned_cols=99 Identities=13% Similarity=0.006 Sum_probs=78.3
Q ss_pred HHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHH
Q 003047 366 LEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLI 445 (854)
Q Consensus 366 ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~ 445 (854)
-.+..|++++|++.|.+++. ..|. .+..|-..+.+|.+++++..||.-+..|+.+.+ ..+.-
T Consensus 123 eAln~G~~~~ai~~~t~ai~-lnp~-~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~----------------Dsa~~ 184 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIE-LNPP-LAILYAKRASVFLKLKKPNAAIRDCDFAIEINP----------------DSAKG 184 (377)
T ss_pred HHhcCcchhhhhcccccccc-cCCc-hhhhcccccceeeeccCCchhhhhhhhhhccCc----------------ccccc
Confidence 34567889999999999999 6774 678888899999999999999999999999832 22233
Q ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC-HHHHHH
Q 003047 446 TYNCGLQYLACGKPVLAARCFQKSSLVFYKQ-PLLWLR 482 (854)
Q Consensus 446 ~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~-~~aw~~ 482 (854)
|--.|.+...+|++++|...|..+++++-+- ..+|+-
T Consensus 185 ykfrg~A~rllg~~e~aa~dl~~a~kld~dE~~~a~lK 222 (377)
T KOG1308|consen 185 YKFRGYAERLLGNWEEAAHDLALACKLDYDEANSATLK 222 (377)
T ss_pred cchhhHHHHHhhchHHHHHHHHHHHhccccHHHHHHHH
Confidence 3346888888999999999999999988654 334543
No 270
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=92.46 E-value=15 Score=44.27 Aligned_cols=110 Identities=12% Similarity=0.020 Sum_probs=65.3
Q ss_pred HHHHhcCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCC
Q 003047 330 FLLLTRNLKHAKREVKLAMNIARGKDSS-LALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAK 408 (854)
Q Consensus 330 lyl~~~~~~~A~~elk~al~~~~~P~~~-~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~ 408 (854)
.|-+.|++++|.+--.+. . +|... ..++.++.-....|+|.+|..+|-.+ ..|+. + . ..|.+.|.
T Consensus 800 my~k~~kw~da~kla~e~---~-~~e~t~~~yiakaedldehgkf~eaeqlyiti---~~p~~-a--i----qmydk~~~ 865 (1636)
T KOG3616|consen 800 MYGKAGKWEDAFKLAEEC---H-GPEATISLYIAKAEDLDEHGKFAEAEQLYITI---GEPDK-A--I----QMYDKHGL 865 (1636)
T ss_pred HHhccccHHHHHHHHHHh---c-CchhHHHHHHHhHHhHHhhcchhhhhheeEEc---cCchH-H--H----HHHHhhCc
Confidence 345667777666543332 2 24443 34456777777888888888777433 34531 2 1 33556666
Q ss_pred HHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Q 003047 409 YHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSL 471 (854)
Q Consensus 409 ~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~ 471 (854)
++.-+....|--- +.-.+....+|.-|...|+..+|.+.|.++-.
T Consensus 866 ~ddmirlv~k~h~------------------d~l~dt~~~f~~e~e~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 866 DDDMIRLVEKHHG------------------DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred chHHHHHHHHhCh------------------hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence 6666554444211 11245666778888888888888887776544
No 271
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.12 E-value=0.84 Score=46.43 Aligned_cols=108 Identities=18% Similarity=0.034 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhc-cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCcccccc
Q 003047 358 LALFLKSQLEYARRNHRKAIKLLLALSNR-TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLT 436 (854)
Q Consensus 358 ~a~~lla~ly~~~g~~~kAl~~l~kal~~-~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~ 436 (854)
.++..+|..|...|++++|++.|.++... ..+......+.++-.+..-.+++.....+..||-.....-. +
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~--d------ 108 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGG--D------ 108 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc--h------
Confidence 57788999999999999999999998874 33444556667777888889999999999999988733210 0
Q ss_pred ccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCC
Q 003047 437 FSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYK 475 (854)
Q Consensus 437 ~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~ 475 (854)
.......----|..++..++|.+|-..|..++.-+..
T Consensus 109 --~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~~ 145 (177)
T PF10602_consen 109 --WERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTFTS 145 (177)
T ss_pred --HHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCCCC
Confidence 0011122223489999999999999999888766653
No 272
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=91.66 E-value=5.3 Score=43.40 Aligned_cols=129 Identities=21% Similarity=0.140 Sum_probs=94.3
Q ss_pred hcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHH----
Q 003047 334 TRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYA----RRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ---- 405 (854)
Q Consensus 334 ~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~----~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~---- 405 (854)
.+++..|...++.+.... ++.+.+.++..|.. ..+..+|+++|.++.. . ..+...++||.+|..
T Consensus 54 ~~~~~~a~~~~~~a~~~~----~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~---~-g~~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 54 PPDYAKALKSYEKAAELG----DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA---D-GLAEALFNLGLMYANGRGV 125 (292)
T ss_pred cccHHHHHHHHHHhhhcC----ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh---c-ccHHHHHhHHHHHhcCCCc
Confidence 455666666666666543 33677888888774 4468999999997766 2 245677889999987
Q ss_pred cCCHHHHHHHHHHHHHhchhcccCCccccccccCCcc-HHHHHHHHHHHHHCC----C---cHHHHHHHHHHHHhcCCCH
Q 003047 406 LAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKS-LLITYNCGLQYLACG----K---PVLAARCFQKSSLVFYKQP 477 (854)
Q Consensus 406 ~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~-~~~~~nLG~~ll~~G----k---~eeAl~~y~kAL~l~P~~~ 477 (854)
..++.+|..+|++|-.. .... ..+.+++|.+|..-. - ...|+..|.++.... ++
T Consensus 126 ~~d~~~A~~~~~~Aa~~----------------g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~ 187 (292)
T COG0790 126 PLDLVKALKYYEKAAKL----------------GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NP 187 (292)
T ss_pred ccCHHHHHHHHHHHHHc----------------CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CH
Confidence 55999999999999987 1111 234778888888752 2 236999999988887 78
Q ss_pred HHHHHHHHHHH
Q 003047 478 LLWLRLAECCL 488 (854)
Q Consensus 478 ~aw~~La~~~i 488 (854)
.+.++||.++.
T Consensus 188 ~a~~~lg~~y~ 198 (292)
T COG0790 188 DAQLLLGRMYE 198 (292)
T ss_pred HHHHHHHHHHH
Confidence 88999997776
No 273
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.03 E-value=7.5 Score=43.06 Aligned_cols=114 Identities=15% Similarity=0.111 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc---------cCCCcc
Q 003047 322 KLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNR---------TEMGIS 392 (854)
Q Consensus 322 ~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~---------~dp~~~ 392 (854)
-+++||+.-|+..++++.|.-|++++.... ++|-+++.+.+.. .+|
T Consensus 126 ~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ----------------------~~AKe~~~~ei~ka~~e~ds~k~~~--- 180 (449)
T COG3014 126 LINYYKALNYMLLNDSAKARVEFNRANERQ----------------------RRAKEFYYEEVQKAIKEIDSSKHNI--- 180 (449)
T ss_pred HHHHHHHhhHHHhcchhhhHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHhccCCC---
Confidence 388999999999999999999999998877 3444444444431 122
Q ss_pred HHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Q 003047 393 SMFNNNLGCIYYQLAKYHTSSV-FLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSL 471 (854)
Q Consensus 393 a~~~nnLG~iy~~~g~~~eAi~-~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~ 471 (854)
|+|....+ -.++++ -|.--+.. +...+ .-..+.+-|..|..+...|++.++...+..++-
T Consensus 181 -----N~~~~~ae---~s~~i~n~Y~ny~~~---yea~~--------~l~npYv~Yl~~lf~a~n~dv~kg~~~~~e~~g 241 (449)
T COG3014 181 -----NMERSRAE---VSEILNNTYSNYLDK---YEAYQ--------GLLNPYVSYLSGLFYALNGDVNKGLGYLNEAYG 241 (449)
T ss_pred -----chhHHHHH---HHHHHHHHHHHHHHH---HHhhc--------ccchHHHHHHHHHhcccCccHhHHHHHHHHHhc
Confidence 12222221 111111 00000110 00000 012356667789999999999999999999999
Q ss_pred hcCCCHHH
Q 003047 472 VFYKQPLL 479 (854)
Q Consensus 472 l~P~~~~a 479 (854)
+.|+...+
T Consensus 242 i~qd~~~~ 249 (449)
T COG3014 242 ISQDQSPF 249 (449)
T ss_pred cCchhhHH
Confidence 99994443
No 274
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=90.87 E-value=2.6 Score=47.83 Aligned_cols=114 Identities=13% Similarity=0.086 Sum_probs=82.3
Q ss_pred HHHhcCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHH---hcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHH
Q 003047 331 LLLTRNLKHAKREVKLAMNIAR--GKDSSLALFLKSQLEYA---RRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ 405 (854)
Q Consensus 331 yl~~~~~~~A~~elk~al~~~~--~P~~~~a~~lla~ly~~---~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~ 405 (854)
|-...+++.-++-++.+-.+.. .++.+...++.|..+.. .|+.++|+.++..++...++ ..++.+--+|.+|..
T Consensus 151 yRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~-~~~d~~gL~GRIyKD 229 (374)
T PF13281_consen 151 YRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDEN-PDPDTLGLLGRIYKD 229 (374)
T ss_pred hhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCC-CChHHHHHHHHHHHH
Confidence 4445566666666666655510 16677888999999999 99999999999997663333 467788889999975
Q ss_pred c---------CCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHH
Q 003047 406 L---------AKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLA 462 (854)
Q Consensus 406 ~---------g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeA 462 (854)
+ ...++|+.+|+|++.+. ++...-.|++..+...|...+.
T Consensus 230 ~~~~s~~~d~~~ldkAi~~Y~kgFe~~-----------------~~~Y~GIN~AtLL~~~g~~~~~ 278 (374)
T PF13281_consen 230 LFLESNFTDRESLDKAIEWYRKGFEIE-----------------PDYYSGINAATLLMLAGHDFET 278 (374)
T ss_pred HHHHcCccchHHHHHHHHHHHHHHcCC-----------------ccccchHHHHHHHHHcCCcccc
Confidence 3 24789999999999982 2334445888888888874443
No 275
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=90.85 E-value=4.8 Score=43.56 Aligned_cols=217 Identities=15% Similarity=0.079 Sum_probs=133.4
Q ss_pred HHHHHHHHhhcHHHHHHHHHHhhhccCCCchhh---HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCC
Q 003047 151 NIAVIWFHLHEYAKALSVLEPLYQNIEPIDETT---ALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGS 227 (854)
Q Consensus 151 n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~---~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~ 227 (854)
-+|.-..+..+|++|+..|.+++..=-..+|.. .....+.++.+|...|++.+--+++.....+..-..+. +.
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~--k~-- 83 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKP--KI-- 83 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcch--hH--
Confidence 345556788999999999999998634444442 45567889999999999987665543333222111000 00
Q ss_pred cccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhh
Q 003047 228 MGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSR 307 (854)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 307 (854)
------+.-+.+-.|+..+ -.++.-.. -..|-++
T Consensus 84 -~KiirtLiekf~~~~dsl~--------------------------dqi~v~~~---------~iewA~r---------- 117 (421)
T COG5159 84 -TKIIRTLIEKFPYSSDSLE--------------------------DQIKVLTA---------LIEWADR---------- 117 (421)
T ss_pred -HHHHHHHHHhcCCCCccHH--------------------------HHHHHHHH---------HHHHHHH----------
Confidence 0000000001111110000 00000000 0011110
Q ss_pred hhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHh
Q 003047 308 TLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIA----RGKDSSLALFLKSQLEYARRNHRKAIKLLLAL 383 (854)
Q Consensus 308 ~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~----~~P~~~~a~~lla~ly~~~g~~~kAl~~l~ka 383 (854)
+.-.-.+..++...+-+|...|++.+|+..+..++... ++|+-...+++-..+|+...+..|+-..+..+
T Consensus 118 ------Ekr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaA 191 (421)
T COG5159 118 ------EKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAA 191 (421)
T ss_pred ------HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHH
Confidence 11233566777888889999999999999988876543 45777889999999999999999999988876
Q ss_pred hhc-----cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 003047 384 SNR-----TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNS 423 (854)
Q Consensus 384 l~~-----~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~ 423 (854)
... -.|...+..-..=|.+|+.-.+|.-|-.||-+|++-+
T Consensus 192 rt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 192 RTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGF 236 (421)
T ss_pred HHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcc
Confidence 652 2333333333323889999999999999999999963
No 276
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=90.76 E-value=2.8 Score=45.73 Aligned_cols=112 Identities=8% Similarity=-0.010 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhchhcccCCccccccc
Q 003047 359 ALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ-LAKYHTSSVFLSKALSNSASLRKDKPLKLLTF 437 (854)
Q Consensus 359 a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~-~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~ 437 (854)
+|....+..-..+..+.|-++|.++++ ..+ ....+|...+.+-+. .++.+.|...|+.+++..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~-~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-------------- 66 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARK-DKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-------------- 66 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-CCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHc-CCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--------------
Confidence 455666777777789999999999997 333 334678778888666 566666999999999983
Q ss_pred cCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCH---HHHHHHHHHHH
Q 003047 438 SQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQP---LLWLRLAECCL 488 (854)
Q Consensus 438 ~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~---~aw~~La~~~i 488 (854)
+.+...|..-...+...++.+.|...|++++..-|... .+|....+.-.
T Consensus 67 --~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~ 118 (280)
T PF05843_consen 67 --PSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFES 118 (280)
T ss_dssp --TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 23456777778889999999999999999999888766 57777665433
No 277
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.57 E-value=55 Score=40.88 Aligned_cols=323 Identities=13% Similarity=-0.007 Sum_probs=175.9
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccc
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLK 433 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~ 433 (854)
|.-.+.+..-+.++...|..++|+++--.+ .||..-+...-+.|.-....++... +...++..|.
T Consensus 344 ~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA---~d~~~aa~lle~~~~~L~~~~~lsl----l~~~~~~lP~-------- 408 (894)
T COG2909 344 ARLKELHRAAAEWFAEHGLPSEAIDHALAA---GDPEMAADLLEQLEWQLFNGSELSL----LLAWLKALPA-------- 408 (894)
T ss_pred CchhHHHHHHHHHHHhCCChHHHHHHHHhC---CCHHHHHHHHHhhhhhhhcccchHH----HHHHHHhCCH--------
Confidence 555778888899999999999999985544 4564334444444554555555332 2222222111
Q ss_pred cccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHhccccCCCCCCCCCccccee
Q 003047 434 LLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQ--PLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVH 511 (854)
Q Consensus 434 ~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~--~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~ 511 (854)
..+...+.-.. --+-.....+++.+|..+..++...-|.. ...-..+|+... .+
T Consensus 409 -~~l~~~P~Lvl--l~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~a--L~------------------- 464 (894)
T COG2909 409 -ELLASTPRLVL--LQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQA--LR------------------- 464 (894)
T ss_pred -HHHhhCchHHH--HHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHH--HH-------------------
Confidence 01111222222 23556778899999999998887766552 222222222111 01
Q ss_pred eccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccc
Q 003047 512 VIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESS 591 (854)
Q Consensus 512 ~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~ 591 (854)
++ ..+....++.|...-+.|+...|....-
T Consensus 465 --------a~------------------------val~~~~~e~a~~lar~al~~L~~~~~~------------------ 494 (894)
T COG2909 465 --------AQ------------------------VALNRGDPEEAEDLARLALVQLPEAAYR------------------ 494 (894)
T ss_pred --------HH------------------------HHHhcCCHHHHHHHHHHHHHhcccccch------------------
Confidence 00 0011113578999999999999884310
Q ss_pred cccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCC
Q 003047 592 EGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMEN 671 (854)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~ 671 (854)
.+...+..++-+..+.|+
T Consensus 495 --------------------------------------------------------------~r~~~~sv~~~a~~~~G~ 512 (894)
T COG2909 495 --------------------------------------------------------------SRIVALSVLGEAAHIRGE 512 (894)
T ss_pred --------------------------------------------------------------hhhhhhhhhhHHHHHhch
Confidence 001234456778889999
Q ss_pred HHHHHHHHHHHHcC--CCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCC----CCCCCchhhhhhhHhhh-
Q 003047 672 PVKALAAARSLLEL--PDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNF----DLPFSGEDCEQWRVEKI- 744 (854)
Q Consensus 672 ~~~Al~~~~~lL~~--p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~----~~~~~~~~~~~~~~~~~- 744 (854)
+.+|+.+-+++... .-...-+-.++.+..++.|...|+..-|.............. ...|...-..+.+..+.
T Consensus 513 ~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r 592 (894)
T COG2909 513 LTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR 592 (894)
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH
Confidence 99999999888863 334445566677778888888995554444443333111111 01122222222111111
Q ss_pred hhhhhccC--CCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCC-----HHHH
Q 003047 745 IDCEELNG--GPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSIL--PRS-----TEAT 815 (854)
Q Consensus 745 ~d~~~~~~--~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~--P~~-----~~a~ 815 (854)
.|..+++. +-..+. .+.|. |. ...+. ++.||.+...+|++++|...+.....+. ++. ..+.
T Consensus 593 ~~~~~~ear~~~~~~~---~~~~~---~~---~~~~~-~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 593 LDLAEAEARLGIEVGS---VYTPQ---PL---LSRLA-LSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HhhhhHHhhhcchhhh---hcccc---hh---HHHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 11111100 000000 01121 22 22333 3799999999999999999999876553 321 1222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHh
Q 003047 816 LTAIYVDLMLGKSQEALAKLKY 837 (854)
Q Consensus 816 ~l~~y~~L~~G~~~eA~~~lk~ 837 (854)
.-..-+-+.+||.++|-..+.+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 3333335589999999888876
No 278
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.31 E-value=16 Score=42.86 Aligned_cols=80 Identities=13% Similarity=0.044 Sum_probs=60.6
Q ss_pred CCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCC-cHHHHHHH
Q 003047 388 EMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGK-PVLAARCF 466 (854)
Q Consensus 388 dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk-~eeAl~~y 466 (854)
++++....+.-+|++++.+|+...|..+|+.++..-.. .+++. --.+.++|.+|..+...|. ..++..++
T Consensus 444 d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~-~~~d~--------w~~PfA~YElA~l~~~~~g~~~e~~~~L 514 (546)
T KOG3783|consen 444 DSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESK-RTEDL--------WAVPFALYELALLYWDLGGGLKEARALL 514 (546)
T ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hcccc--------ccccHHHHHHHHHHHhcccChHHHHHHH
Confidence 55444455555799999999999999999999875110 11111 1236799999999999999 99999999
Q ss_pred HHHHHhcCCC
Q 003047 467 QKSSLVFYKQ 476 (854)
Q Consensus 467 ~kAL~l~P~~ 476 (854)
.+|-.-..++
T Consensus 515 ~kAr~~~~dY 524 (546)
T KOG3783|consen 515 LKAREYASDY 524 (546)
T ss_pred HHHHhhcccc
Confidence 9998877654
No 279
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.23 E-value=3.1 Score=44.12 Aligned_cols=109 Identities=14% Similarity=0.010 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhhc--c--CCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccc
Q 003047 360 LFLKSQLEYARRNHRKAIKLLLALSNR--T--EMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLL 435 (854)
Q Consensus 360 ~~lla~ly~~~g~~~kAl~~l~kal~~--~--dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~ 435 (854)
+..-+..|-.-.+|++|-.++.++.+- . .+=..+..+-..|.....+.++.++..+|+||...-.+-+
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G-------- 105 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG-------- 105 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC--------
Confidence 344455566778888888888888851 0 1112345566678888899999999999999988732211
Q ss_pred cccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHH
Q 003047 436 TFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLL 479 (854)
Q Consensus 436 ~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~a 479 (854)
.+..+..-...+.-.+..-++++|+..|++++.+.-+.-+.
T Consensus 106 ---spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~ 146 (308)
T KOG1585|consen 106 ---SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRD 146 (308)
T ss_pred ---CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchH
Confidence 22223333345555667778999999999999988766543
No 280
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.92 E-value=0.3 Score=53.77 Aligned_cols=91 Identities=11% Similarity=-0.040 Sum_probs=81.5
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcC
Q 003047 328 VRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLA 407 (854)
Q Consensus 328 ~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g 407 (854)
+.-.+-.|.+++|++.+-+++.++ |.....+..++.++...++..+|+.-|..++. .+|+ .+.-|--.|..+..+|
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~ln--p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e-in~D-sa~~ykfrg~A~rllg 196 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELN--PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE-INPD-SAKGYKFRGYAERLLG 196 (377)
T ss_pred HHHHhcCcchhhhhcccccccccC--CchhhhcccccceeeeccCCchhhhhhhhhhc-cCcc-cccccchhhHHHHHhh
Confidence 334556789999999999999999 99999999999999999999999999999999 6774 3445555899999999
Q ss_pred CHHHHHHHHHHHHHh
Q 003047 408 KYHTSSVFLSKALSN 422 (854)
Q Consensus 408 ~~~eAi~~f~kAL~~ 422 (854)
++.+|-++|+.+.++
T Consensus 197 ~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 197 NWEEAAHDLALACKL 211 (377)
T ss_pred chHHHHHHHHHHHhc
Confidence 999999999999998
No 281
>PRK10941 hypothetical protein; Provisional
Probab=89.77 E-value=1.9 Score=46.96 Aligned_cols=75 Identities=11% Similarity=-0.036 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc
Q 003047 394 MFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVF 473 (854)
Q Consensus 394 ~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~ 473 (854)
..+.||=.+|.+.++++.|+.+.+..|.+ .|.++.-+-..|.+|.++|.+..|..-|+..++..
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l----------------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQF----------------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 45677888999999999999999999998 34556777789999999999999999999999999
Q ss_pred CCCHHHHHHHH
Q 003047 474 YKQPLLWLRLA 484 (854)
Q Consensus 474 P~~~~aw~~La 484 (854)
|+.|.+-.-..
T Consensus 246 P~dp~a~~ik~ 256 (269)
T PRK10941 246 PEDPISEMIRA 256 (269)
T ss_pred CCchhHHHHHH
Confidence 99998754443
No 282
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=89.54 E-value=2.3 Score=38.34 Aligned_cols=44 Identities=25% Similarity=0.289 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHH
Q 003047 146 SVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICL 189 (854)
Q Consensus 146 ~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l 189 (854)
...+.|+|.+....|++++|++.++++++..++..|......++
T Consensus 41 ~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al 84 (94)
T PF12862_consen 41 AYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYAL 84 (94)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 45678999999999999999999999999999998875433333
No 283
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=89.36 E-value=3.2 Score=38.85 Aligned_cols=92 Identities=12% Similarity=0.004 Sum_probs=67.9
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHHhcC-----------HHHHHHHHHHhhhccCCCcc
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKDSS---LALFLKSQLEYARRN-----------HRKAIKLLLALSNRTEMGIS 392 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~~~---~a~~lla~ly~~~g~-----------~~kAl~~l~kal~~~dp~~~ 392 (854)
+++-++..|+.-+|++-++.++..+ +++. ..+...|.+++.... ..-|+++|.++.. ..| ..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h--~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~-Lsp-~~ 77 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRH--GEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE-LSP-DS 77 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHc--cCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc-cCh-hH
Confidence 4677889999999999999999999 7776 455678999876553 3467888888877 567 35
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003047 393 SMFNNNLGCIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 393 a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
+..++.+|.=+....-|.++...-+++|.+
T Consensus 78 A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 78 AHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 666666666655555566666666666665
No 284
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.24 E-value=0.44 Score=32.40 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 003047 779 TLYVNIAAMFAMQGEFERAHHFVTQ 803 (854)
Q Consensus 779 ~~~~NLa~~~~~~g~~e~A~~~~~~ 803 (854)
.++++||.++..+|++++|+..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 4567888888888888888887763
No 285
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.21 E-value=1.1 Score=44.65 Aligned_cols=69 Identities=14% Similarity=0.150 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCcccc
Q 003047 777 RGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKY-CNHVRFLP 845 (854)
Q Consensus 777 ~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~-~~~~~~~~ 845 (854)
-...+..+..+-...++.++++..+.-.--+.|..+.+....+|+++..|++.+|+++++. ...-|..|
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p 78 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFP 78 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCh
Confidence 5667788889999999999999999998888999999999999999999999999999999 44444444
No 286
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=89.11 E-value=9.4 Score=43.93 Aligned_cols=137 Identities=14% Similarity=0.084 Sum_probs=92.3
Q ss_pred hHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHH--HHHHHHHHHHHHHHHhh
Q 003047 24 LSVTATLAKEAALYFQSRK-FDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKL--LEALNNVKNKSEELARA 100 (854)
Q Consensus 24 ~~~~~~l~~~a~~~~~~g~-y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~ 100 (854)
---+..|+..|-.+++.|+ =++|+.+++.++...+.|.+...- +..+.+.-|+++... ..-+-.+.+.+...
T Consensus 376 qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~--v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~--- 450 (549)
T PF07079_consen 376 QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENI--VFLFVKQAYKQALSMHAIPRLLKLEDFITEV--- 450 (549)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---
Confidence 4456778889999999999 889999999999999999877652 234444444433332 33344455555310
Q ss_pred hcccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHH--HHHHHHhhcHHHHHHHHHHhhhccCC
Q 003047 101 TGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNI--AVIWFHLHEYAKALSVLEPLYQNIEP 178 (854)
Q Consensus 101 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~--a~~~~~~~~y~~A~~~~e~l~~~~~~ 178 (854)
|.+ .+ ...++..-.-+ |..+|.+|+|.+++-+=.=+.++-+.
T Consensus 451 ----------------------gl~-------------~i-~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS 494 (549)
T PF07079_consen 451 ----------------------GLT-------------PI-TISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPS 494 (549)
T ss_pred ----------------------CCC-------------cc-cccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCc
Confidence 000 11 11233333333 78899999999999988888885442
Q ss_pred CchhhHHHHHHHHHHHHHHccCHHHHHHH
Q 003047 179 IDETTALQICLLLLDVALACHDAFRSADV 207 (854)
Q Consensus 179 ~~e~~~~~~~l~l~~vy~~~~~~~kA~~~ 207 (854)
+ .++-++|-+.....+|.+|+++
T Consensus 495 ---~---~~~RLlGl~l~e~k~Y~eA~~~ 517 (549)
T PF07079_consen 495 ---P---QAYRLLGLCLMENKRYQEAWEY 517 (549)
T ss_pred ---H---HHHHHHHHHHHHHhhHHHHHHH
Confidence 2 2477788999999999999953
No 287
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.96 E-value=3.7 Score=40.97 Aligned_cols=77 Identities=14% Similarity=0.072 Sum_probs=65.0
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCC
Q 003047 329 RFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAK 408 (854)
Q Consensus 329 ~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~ 408 (854)
.+-+..++.+++..-+..+--+. |..+..-+.-|.++..+|++.+|+.+|+.+.. ..| ..+.+--.+++|++.+|+
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~-~~~-~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLRELEE-RAP-GFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc-cCC-CChHHHHHHHHHHHHcCC
Confidence 44566789999999999998998 99999999999999999999999999999887 455 345555558888888877
Q ss_pred H
Q 003047 409 Y 409 (854)
Q Consensus 409 ~ 409 (854)
+
T Consensus 94 ~ 94 (160)
T PF09613_consen 94 P 94 (160)
T ss_pred h
Confidence 4
No 288
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=88.94 E-value=1.1 Score=48.56 Aligned_cols=70 Identities=14% Similarity=0.050 Sum_probs=61.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHH
Q 003047 399 LGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPL 478 (854)
Q Consensus 399 LG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~ 478 (854)
.+.-..+.|+.++|...|+-||++ .|.+++++...|.....-++.-+|-.||-+||.+.|.+.+
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlal----------------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse 185 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALAL----------------APTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE 185 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhc----------------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence 444456789999999999999999 3556788989999999999999999999999999999999
Q ss_pred HHHHHH
Q 003047 479 LWLRLA 484 (854)
Q Consensus 479 aw~~La 484 (854)
+..+.+
T Consensus 186 ALvnR~ 191 (472)
T KOG3824|consen 186 ALVNRA 191 (472)
T ss_pred HHhhhh
Confidence 887766
No 289
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=88.60 E-value=1.8 Score=39.15 Aligned_cols=61 Identities=11% Similarity=0.020 Sum_probs=46.1
Q ss_pred HHHHhcCHHHHHHHHHHhhhc----cCCC---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhc
Q 003047 366 LEYARRNHRKAIKLLLALSNR----TEMG---ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASL 426 (854)
Q Consensus 366 ly~~~g~~~kAl~~l~kal~~----~dp~---~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l 426 (854)
-....|+|.+|++.+.+.... ..+. ....++.+++.++...|++++|+..+++|+.+.++.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 345678888888888777752 1111 124677789999999999999999999999986543
No 290
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=87.94 E-value=59 Score=37.73 Aligned_cols=32 Identities=22% Similarity=0.465 Sum_probs=27.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 003047 30 LAKEAALYFQSRKFDECLDLLKQLLDKKPDDP 61 (854)
Q Consensus 30 l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~ 61 (854)
|..+|+.....++|++|.+.|.++-+.....+
T Consensus 9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~ 40 (549)
T PF07079_consen 9 LCFQGFILQKQKKFQESEKIFSKIYDEKESSP 40 (549)
T ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHhhcch
Confidence 56789999999999999999999998766654
No 291
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=87.38 E-value=1.7 Score=47.23 Aligned_cols=52 Identities=13% Similarity=0.012 Sum_probs=36.6
Q ss_pred HhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003047 369 ARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 369 ~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
..|+.++|.++|+.+++ ..|. ++.++..+|.+....++.-+|-.||-|||.+
T Consensus 128 ~~Gk~ekA~~lfeHAla-laP~-~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALA-LAPT-NPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred hccchHHHHHHHHHHHh-cCCC-CHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 55777777777777777 5663 5667777777776666777777777777776
No 292
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=87.27 E-value=4.7 Score=38.24 Aligned_cols=63 Identities=24% Similarity=0.098 Sum_probs=50.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHc-------CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 003047 659 LANLAYVELEMENPVKALAAARSLLE-------LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYL 721 (854)
Q Consensus 659 l~~la~v~l~lg~~~~Al~~~~~lL~-------~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l 721 (854)
++.|+-++-.+|+|.++|..+.++|. ...+...+-.-+....+.||-.+||.+||+..|+.+.
T Consensus 58 hA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 58 HAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 66778889999999999999999983 3455556656666778889999999999999999987
No 293
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.32 E-value=21 Score=36.27 Aligned_cols=138 Identities=12% Similarity=0.005 Sum_probs=75.3
Q ss_pred HhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHH-----HHHHHHHHHcC
Q 003047 333 LTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFN-----NNLGCIYYQLA 407 (854)
Q Consensus 333 ~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~-----nnLG~iy~~~g 407 (854)
+.++.++|+..++.+-+-+-|.--.-+.+..|.+..+.|+...|+..|..+-+ ..| .|.+. ..-+..+...|
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~-dt~--~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA-DTS--IPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc-cCC--CcchhhHHHHHHHHHHHhccc
Confidence 44555556666555555541111122344455556666666666666665554 222 11111 11123333334
Q ss_pred CHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 003047 408 KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECC 487 (854)
Q Consensus 408 ~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~ 487 (854)
-|+.-..-.+. +..-.++.+..+-.-||.+-++.|++.+|...|.++.. +..-|+.-.+.+++.
T Consensus 147 sy~dV~srvep---------------La~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~m 210 (221)
T COG4649 147 SYDDVSSRVEP---------------LAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIM 210 (221)
T ss_pred cHHHHHHHhhh---------------ccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHH
Confidence 43332221111 11112445677777899999999999999999999877 666677666666665
Q ss_pred HH
Q 003047 488 LM 489 (854)
Q Consensus 488 i~ 489 (854)
..
T Consensus 211 ld 212 (221)
T COG4649 211 LD 212 (221)
T ss_pred HH
Confidence 53
No 294
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.24 E-value=1.7 Score=42.72 Aligned_cols=61 Identities=11% Similarity=0.029 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003047 777 RGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKY 837 (854)
Q Consensus 777 ~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~ 837 (854)
-......+..+-...++++++...+...--+.|+.+.+....+|++++.|++.+|+++++.
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~ 69 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRE 69 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHh
Confidence 4555667777788899999999999988888899999999999999999999999999998
No 295
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=86.16 E-value=2.1 Score=50.25 Aligned_cols=110 Identities=12% Similarity=0.031 Sum_probs=84.0
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccc
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLK 433 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~ 433 (854)
|.+...+.+-+-.+-.+|+..+|+.|+..++-...|.....++..||.+++++|...+|--.+.-|+...+-+
T Consensus 210 ~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~------- 282 (886)
T KOG4507|consen 210 TSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFF------- 282 (886)
T ss_pred chhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccc-------
Confidence 5544444444445558999999999999988744444556778889999999999999988887777752211
Q ss_pred cccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHH
Q 003047 434 LLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLL 479 (854)
Q Consensus 434 ~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~a 479 (854)
..-+|-+|.++.++|.+...+.+|..+.+..|..-..
T Consensus 283 ---------t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~ 319 (886)
T KOG4507|consen 283 ---------TSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQA 319 (886)
T ss_pred ---------cccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHH
Confidence 1226778999999999999999999999999987544
No 296
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=86.13 E-value=56 Score=35.56 Aligned_cols=116 Identities=16% Similarity=0.181 Sum_probs=74.8
Q ss_pred cchhhhHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhc----CCCC----------HHHHHHHHHHHHHHhCCCChhHH
Q 003047 19 DDSGVLSVTATLAKEAALYFQSR-KFDECLDLLKQLLDK----KPDD----------PKILHNIAIAEYFRDGCTDPKKL 83 (854)
Q Consensus 19 ~~~~~~~~~~~l~~~a~~~~~~g-~y~~Al~~l~~~l~~----~~~~----------~~~l~nla~~~~~~~~~~~~~~~ 83 (854)
+...+..-+.-++.-|...+.++ +|+.|...+++++++ .+.+ ..+++.++.++...+. +...
T Consensus 27 ~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~---~~~~ 103 (278)
T PF08631_consen 27 DPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDT---YESV 103 (278)
T ss_pred CcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCC---hHHH
Confidence 44566778888899999999999 999999999999987 2221 3678888877763332 3333
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHH
Q 003047 84 LEALNNVKNKSEELARATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYA 163 (854)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~ 163 (854)
.++...++-...+ ..+.++ ..+..+-+..- .++.+
T Consensus 104 ~ka~~~l~~l~~e------------------------------------------~~~~~~--~~~L~l~il~~-~~~~~ 138 (278)
T PF08631_consen 104 EKALNALRLLESE------------------------------------------YGNKPE--VFLLKLEILLK-SFDEE 138 (278)
T ss_pred HHHHHHHHHHHHh------------------------------------------CCCCcH--HHHHHHHHHhc-cCChh
Confidence 3333332222210 111122 23344444444 89999
Q ss_pred HHHHHHHHhhhccCCCchh
Q 003047 164 KALSVLEPLYQNIEPIDET 182 (854)
Q Consensus 164 ~A~~~~e~l~~~~~~~~e~ 182 (854)
.+.+++.+++..+.-.+..
T Consensus 139 ~~~~~L~~mi~~~~~~e~~ 157 (278)
T PF08631_consen 139 EYEEILMRMIRSVDHSESN 157 (278)
T ss_pred HHHHHHHHHHHhcccccch
Confidence 9999999999987644443
No 297
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=86.01 E-value=11 Score=35.38 Aligned_cols=106 Identities=16% Similarity=0.145 Sum_probs=68.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 003047 33 EAALYFQSRKFDECLDLLKQLLDKKPDDPK---ILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGG 109 (854)
Q Consensus 33 ~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~---~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 109 (854)
.|..+|.+|++-+|+++.+++....+++.. +.+.=|-+.+....-+ ++..-....+..+++..+.....
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~t--en~d~k~~yLl~sve~~s~a~~L------ 73 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKT--ENPDVKFRYLLGSVECFSRAVEL------ 73 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhc--cCchHHHHHHHHhHHHHHHHhcc------
Confidence 478899999999999999999998887653 3333344433333212 22222444555555443221111
Q ss_pred CCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCC
Q 003047 110 NIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEP 178 (854)
Q Consensus 110 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~ 178 (854)
.|.-+..+|++|.=+-...-|.|+...-++.+.+..|
T Consensus 74 --------------------------------sp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~~p 110 (111)
T PF04781_consen 74 --------------------------------SPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVTNP 110 (111)
T ss_pred --------------------------------ChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcccCC
Confidence 3445778888888888888888888888887775443
No 298
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=85.86 E-value=3.7 Score=52.45 Aligned_cols=162 Identities=15% Similarity=0.013 Sum_probs=114.8
Q ss_pred CCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHHhcC
Q 003047 299 GLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIAR------GKDSSLALFLKSQLEYARRN 372 (854)
Q Consensus 299 ~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~------~P~~~~a~~lla~ly~~~g~ 372 (854)
+.++|-++++|.-+-+.. ...+ .+-+++|-..++..+|+..-.+++-+.. +|+....+..++...+..++
T Consensus 955 ~~slnl~~~v~~~~h~~~---~~~~-~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~ 1030 (1236)
T KOG1839|consen 955 PESLNLLNNVMGVLHPEV---ASKY-RSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKN 1030 (1236)
T ss_pred hhhhhHHHHhhhhcchhH---HHHH-HHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccC
Confidence 456777777775542222 2222 3447788888888888887666655541 47778889999999999999
Q ss_pred HHHHHHHHHHhhhc-------cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHH
Q 003047 373 HRKAIKLLLALSNR-------TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLI 445 (854)
Q Consensus 373 ~~kAl~~l~kal~~-------~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~ 445 (854)
...|+..+.+++.. ..| ..+...+|++.++..+++++.|+.+.+.|+.....+...+. -.....
T Consensus 1031 ~~~al~~~~ra~~l~~Ls~ge~hP-~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~--------l~~~~~ 1101 (1236)
T KOG1839|consen 1031 LSGALKSLNRALKLKLLSSGEDHP-PTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKE--------LETALS 1101 (1236)
T ss_pred ccchhhhHHHHHHhhccccCCCCC-chhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccc--------hhhhhH
Confidence 99999999998873 246 34667789999999999999999999999997433221111 122345
Q ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHhc
Q 003047 446 TYNCGLQYLACGKPVLAARCFQKSSLVF 473 (854)
Q Consensus 446 ~~nLG~~ll~~Gk~eeAl~~y~kAL~l~ 473 (854)
+..++..+...+.+..|+........++
T Consensus 1102 ~~~~a~l~~s~~dfr~al~~ek~t~~iy 1129 (1236)
T KOG1839|consen 1102 YHALARLFESMKDFRNALEHEKVTYGIY 1129 (1236)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhHHHHH
Confidence 5566777777777777777766666655
No 299
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=85.46 E-value=3.9 Score=42.95 Aligned_cols=88 Identities=17% Similarity=0.152 Sum_probs=56.5
Q ss_pred cCHHHHHHHHHHHHHhcC--CCCC---HHHHHHHHHHHHHhcCH-------HHHHHHHHHhhhc-cCCC---ccHHHHHH
Q 003047 335 RNLKHAKREVKLAMNIAR--GKDS---SLALFLKSQLEYARRNH-------RKAIKLLLALSNR-TEMG---ISSMFNNN 398 (854)
Q Consensus 335 ~~~~~A~~elk~al~~~~--~P~~---~~a~~lla~ly~~~g~~-------~kAl~~l~kal~~-~dp~---~~a~~~nn 398 (854)
..+++|++.++-++-..+ +++. ...++-+|.+|-..|+. .+|++.|.++... ..|. +...+.+.
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 355666666666554442 1111 12334567777777774 4555666665552 1111 23566777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q 003047 399 LGCIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 399 LG~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
+|.++.+.|++++|+.+|.+++..
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcC
Confidence 999999999999999999999996
No 300
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=85.41 E-value=1.1e+02 Score=38.34 Aligned_cols=103 Identities=14% Similarity=0.049 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCC---------CHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc---cC
Q 003047 321 LKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKD---------SSLALFLKSQLEYARRNHRKAIKLLLALSNR---TE 388 (854)
Q Consensus 321 ~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~---------~~~a~~lla~ly~~~g~~~kAl~~l~kal~~---~d 388 (854)
..+.+.++-....+.++.+|...+.++...- |. .....-+.|.+....|++++|+++...++.. ..
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l--~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~ 492 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFL--KAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA 492 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHh--CcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence 3567777888888999999999998887766 43 2355678999999999999999999999984 12
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 003047 389 MGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSAS 425 (854)
Q Consensus 389 p~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~ 425 (854)
+.....++..+|.++.-.|++++|..+.+++.+..++
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~ 529 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQ 529 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 2234567778899999999999999999999998543
No 301
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=84.81 E-value=73 Score=35.73 Aligned_cols=282 Identities=13% Similarity=0.150 Sum_probs=154.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCH-------HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHH
Q 003047 27 TATLAKEAALYFQSRKFDECLDLLKQLLDK---KPDDP-------KILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEE 96 (854)
Q Consensus 27 ~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~---~~~~~-------~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 96 (854)
+.+++.++.......++.+++..|.+++.. ...+. ....+++..+.-.++ ..++.+.+..++.-+..
T Consensus 4 ~~~~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~---~~~lr~li~~~Rpf~~~ 80 (411)
T KOG1463|consen 4 AASLLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGD---AEELRDLITSLRPFLSS 80 (411)
T ss_pred hHHHHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccc---hhHHHHHHHHHHHHHHH
Confidence 345588888888889999999999999985 22222 234566655444443 33333344444433322
Q ss_pred HHhhhc-----------ccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHH--------------
Q 003047 97 LARATG-----------EQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLN-------------- 151 (854)
Q Consensus 97 ~~~~~~-----------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n-------------- 151 (854)
++.+.. ...+ +++|. .++-..+++-|-.
T Consensus 81 v~KakaaKlvR~Lvd~~~~~~-----------~~~~~----------------~i~l~~~cIeWA~~ekRtFLRq~Lear 133 (411)
T KOG1463|consen 81 VSKAKAAKLVRSLVDMFLKID-----------DGTGD----------------QIELCTECIEWAKREKRTFLRQSLEAR 133 (411)
T ss_pred hhhHHHHHHHHHHHHHHccCC-----------CCcch----------------HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 211110 0000 00000 1111233333322
Q ss_pred HHHHHHHhhcHHHHHHHHHHhhhccCCCchhh-HHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hhhcccccCCCCCCcc
Q 003047 152 IAVIWFHLHEYAKALSVLEPLYQNIEPIDETT-ALQICLLLLDVALACHDAFRSADVLIYLEK-AFSVGCVNQVDSGSMG 229 (854)
Q Consensus 152 ~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~-~~~~~l~l~~vy~~~~~~~kA~~~l~~lek-~l~~~~~~~~~~~~~~ 229 (854)
+..+|+..++|.+|+.....+++.+..+||.. -+.+.++=..+|....+..||-..|.--.. +..+-+++
T Consensus 134 li~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpP-------- 205 (411)
T KOG1463|consen 134 LIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPP-------- 205 (411)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCH--------
Confidence 47789999999999999999999999999984 445556666888888998888655543331 22222221
Q ss_pred cchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhh---hhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhh
Q 003047 230 QQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALS---RTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELS 306 (854)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 306 (854)
|.|.+ .... .|+|+ .++..++-=|+.++- ++- ++
T Consensus 206 qlQa~------------------------lDLq-SGIlha~ekDykTafSYFyEAfE------gf~-----------s~- 242 (411)
T KOG1463|consen 206 QLQAT------------------------LDLQ-SGILHAAEKDYKTAFSYFYEAFE------GFD-----------SL- 242 (411)
T ss_pred HHHHH------------------------HHHh-ccceeecccccchHHHHHHHHHc------ccc-----------cc-
Confidence 22211 1111 13333 345555556666641 000 01
Q ss_pred hhhhhcccchhHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HhcCHHHHHHHHHH
Q 003047 307 RTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKH--AKREVKLAMNIARGKDSSLALFLKSQLEY--ARRNHRKAIKLLLA 382 (854)
Q Consensus 307 ~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~--A~~elk~al~~~~~P~~~~a~~lla~ly~--~~g~~~kAl~~l~k 382 (854)
++. ..--..+.+. -.+-++.+..++ ++-.-|.++... ..+.+++-..|..+. ...+|++|+.-|..
T Consensus 243 ------~~~-v~A~~sLKYM-lLcKIMln~~ddv~~lls~K~~l~y~--g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~ 312 (411)
T KOG1463|consen 243 ------DDD-VKALTSLKYM-LLCKIMLNLPDDVAALLSAKLALKYA--GRDIDAMKAVAEAFGNRSLKDFEKALADYKK 312 (411)
T ss_pred ------CCc-HHHHHHHHHH-HHHHHHhcCHHHHHHHHhhHHHHhcc--CcchHHHHHHHHHhcCCcHHHHHHHHHHhHH
Confidence 010 0111112111 122233444443 555556677766 777888888888877 45689999999998
Q ss_pred hhhccCCCccHHHHHHHHHHHH
Q 003047 383 LSNRTEMGISSMFNNNLGCIYY 404 (854)
Q Consensus 383 al~~~dp~~~a~~~nnLG~iy~ 404 (854)
-+. .|| .+.-.+...|-
T Consensus 313 eL~-~D~----ivr~Hl~~Lyd 329 (411)
T KOG1463|consen 313 ELA-EDP----IVRSHLQSLYD 329 (411)
T ss_pred HHh-cCh----HHHHHHHHHHH
Confidence 888 566 23333555553
No 302
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=84.27 E-value=14 Score=43.75 Aligned_cols=143 Identities=15% Similarity=-0.021 Sum_probs=98.7
Q ss_pred HHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHH--HHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcC
Q 003047 330 FLLLTRNLKHAKREVKLAMNIARGKDSSLALFL--KSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLA 407 (854)
Q Consensus 330 lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~l--la~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g 407 (854)
.+...+.-..++..+..-+.++ |.++..++. +...+...+....++-.+..++. .+|. ++.++.|||......|
T Consensus 40 ~l~~~~~~~~~~~a~~~~~~~~--~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~L~~ale~~~ 115 (620)
T COG3914 40 WLNAEGLQALAIYALLLGIAIN--DVNPELLLAAFLSILLAPLADSTLAFLAKRIPLS-VNPE-NCPAVQNLAAALELDG 115 (620)
T ss_pred HhcccCchhHHHHHHHccCccC--CCCHHHHHHHHHHhhccccccchhHHHHHhhhHh-cCcc-cchHHHHHHHHHHHhh
Confidence 3333344343666666666677 888877543 58888889999889888888888 6884 6778999988887777
Q ss_pred CHHHHHHHHHH-HHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 003047 408 KYHTSSVFLSK-ALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAEC 486 (854)
Q Consensus 408 ~~~eAi~~f~k-AL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~ 486 (854)
....++..+.. +....+....- .. ....+|.+|..+-.+|+..++.....++..+.|.++++...+.-.
T Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~---------~~-~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 116 LQFLALADISEIAEWLSPDNAEF---------LG-HLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred hHHHHHHHHHHHHHhcCcchHHH---------Hh-hHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 76666666655 66652211000 00 111233469999999999999999999999999998765555433
No 303
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=84.23 E-value=46 Score=37.82 Aligned_cols=97 Identities=16% Similarity=0.141 Sum_probs=72.0
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHH-HHHhcCHHHHHHHHHHhhhccCCC---ccHHHHHHHHH
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKD-SSLALFLKSQL-EYARRNHRKAIKLLLALSNRTEMG---ISSMFNNNLGC 401 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~-~~~a~~lla~l-y~~~g~~~kAl~~l~kal~~~dp~---~~a~~~nnLG~ 401 (854)
..+...+.|-+..|++-.|-++.++ |. |+-...+.=+. -...++|+==+++++......... .-+..-+.++.
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLd--p~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aL 186 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLD--PDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIAL 186 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcC--CCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHH
Confidence 3778889999999999999999999 98 77665544444 446777877788777765410110 01234556888
Q ss_pred HHHHcCCH---------------HHHHHHHHHHHHhchh
Q 003047 402 IYYQLAKY---------------HTSSVFLSKALSNSAS 425 (854)
Q Consensus 402 iy~~~g~~---------------~eAi~~f~kAL~~~~~ 425 (854)
+++.+++. ++|-..+.+|+...|.
T Consensus 187 A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 187 AYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 99999998 8999999999998654
No 304
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=84.15 E-value=3.5 Score=37.15 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=39.7
Q ss_pred chhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHH
Q 003047 142 EFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDV 194 (854)
Q Consensus 142 ~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~v 194 (854)
+|++....|.+|..+...|+|++|++.+..+++.-+..++..+.+.++-+..+
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~ 70 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFEL 70 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHH
Confidence 67788899999999999999999999999999987776665555554444333
No 305
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=83.90 E-value=33 Score=37.10 Aligned_cols=147 Identities=8% Similarity=-0.052 Sum_probs=87.0
Q ss_pred cchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HHhcCHHHHHHHHHHhhhccCCCcc
Q 003047 314 ISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLE-YARRNHRKAIKLLLALSNRTEMGIS 392 (854)
Q Consensus 314 ~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly-~~~g~~~kAl~~l~kal~~~dp~~~ 392 (854)
+++++|+....++|+-+... ..-..|+.-...++.++ |.|-..+...=.+. ....+..+-++++..++. ..|. +
T Consensus 37 ~Yte~fr~~m~YfRAI~~~~-E~S~RAl~LT~d~i~lN--pAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e-~npK-N 111 (318)
T KOG0530|consen 37 AYTEDFRDVMDYFRAIIAKN-EKSPRALQLTEDAIRLN--PANYTVWQYRRVILRHLMSDLNKELEYLDEIIE-DNPK-N 111 (318)
T ss_pred eechhHHHHHHHHHHHHhcc-ccCHHHHHHHHHHHHhC--cccchHHHHHHHHHHHhHHHHHHHHHHHHHHHH-hCcc-c
Confidence 34567777777776644333 33455777777777777 77766654433333 244456666677777666 5663 4
Q ss_pred HHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Q 003047 393 SMFNNNLGCIYYQLAKYH-TSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSL 471 (854)
Q Consensus 393 a~~~nnLG~iy~~~g~~~-eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~ 471 (854)
-.+|...-.+....|++. .=++..+++|.. ..++.-+|-..-=+....+.++.-+.+..+.|+
T Consensus 112 YQvWHHRr~ive~l~d~s~rELef~~~~l~~----------------DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle 175 (318)
T KOG0530|consen 112 YQVWHHRRVIVELLGDPSFRELEFTKLMLDD----------------DAKNYHAWSHRQWVLRFFKDYEDELAYADELLE 175 (318)
T ss_pred hhHHHHHHHHHHHhcCcccchHHHHHHHHhc----------------cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 456666666666666666 556666666664 123445666555566666666666666666666
Q ss_pred hcCCCHHHHH
Q 003047 472 VFYKQPLLWL 481 (854)
Q Consensus 472 l~P~~~~aw~ 481 (854)
.+--|-.+|.
T Consensus 176 ~Di~NNSAWN 185 (318)
T KOG0530|consen 176 EDIRNNSAWN 185 (318)
T ss_pred Hhhhccchhh
Confidence 5555555553
No 306
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=83.42 E-value=90 Score=35.69 Aligned_cols=123 Identities=13% Similarity=0.043 Sum_probs=84.7
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHH---
Q 003047 328 VRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYY--- 404 (854)
Q Consensus 328 ~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~--- 404 (854)
+.+-.-.|+-..|.+--++.-++-.--..+-.+++-++.-+..|+|+.|-+-|+..+. +|. .-+..|-++|.
T Consensus 91 GliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~--dPE---tRllGLRgLyleAq 165 (531)
T COG3898 91 GLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD--DPE---TRLLGLRGLYLEAQ 165 (531)
T ss_pred hhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc--ChH---HHHHhHHHHHHHHH
Confidence 3444456676667666666553330013355667889999999999999999999987 663 33444544453
Q ss_pred HcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Q 003047 405 QLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSL 471 (854)
Q Consensus 405 ~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~ 471 (854)
+.|.++.|+.|-.++-...+++ .=++...=......|+++.|++..+....
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l----------------~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQL----------------PWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCC----------------chHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 6899999999999998874433 22333344567889999999998876554
No 307
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=83.35 E-value=4.4 Score=46.48 Aligned_cols=122 Identities=18% Similarity=0.112 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HhcCHHHHHHHHHHhhhc----cCCCccH-------HHHHHHHHHHHHc
Q 003047 340 AKREVKLAMNIARGKDSSLALFLKSQLEY--ARRNHRKAIKLLLALSNR----TEMGISS-------MFNNNLGCIYYQL 406 (854)
Q Consensus 340 A~~elk~al~~~~~P~~~~a~~lla~ly~--~~g~~~kAl~~l~kal~~----~dp~~~a-------~~~nnLG~iy~~~ 406 (854)
..+|+..+.+.+ |+-...+-.+..++- .+.+..+-++........ .+....+ ..+..|-.+|.-+
T Consensus 58 ~~~e~~~l~~~~--~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LL 135 (404)
T PF10255_consen 58 TEEEIQLLKENN--PDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLL 135 (404)
T ss_pred CHHHHHHHHhhc--cCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhc
Confidence 357777777776 776666555544443 455566666655553210 1111111 1222345688899
Q ss_pred CCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Q 003047 407 AKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSL 471 (854)
Q Consensus 407 g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~ 471 (854)
|+|..|++.++-. .+.+ .. +......-...++|.+|.+|++++||.+|+++|..+|-
T Consensus 136 GDY~~Alk~l~~i-dl~~-----~~--l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 136 GDYYQALKVLENI-DLNK-----KG--LYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred cCHHHHHHHhhcc-Cccc-----ch--hhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998765442 1100 00 00111223457899999999999999999999998774
No 308
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.87 E-value=8.9 Score=37.88 Aligned_cols=76 Identities=13% Similarity=0.027 Sum_probs=61.2
Q ss_pred HHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCH
Q 003047 330 FLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKY 409 (854)
Q Consensus 330 lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~ 409 (854)
.-+...+++++..-+..+--+- |+.+..-+.-|.++...|++.+|+.++..+.. ..+ ..+..--.++.|++.+|+.
T Consensus 19 ~aL~~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~-~~~-~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 19 YALRSADPYDAQAMLDALRVLR--PNLKELDMFDGWLLIARGNYDEAARILRELLS-SAG-APPYGKALLALCLNAKGDA 94 (153)
T ss_pred HHHhcCCHHHHHHHHHHHHHhC--CCccccchhHHHHHHHcCCHHHHHHHHHhhhc-cCC-CchHHHHHHHHHHHhcCCh
Confidence 3445889999999998888888 99999999999999999999999999999988 444 2344444467777777664
No 309
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=82.82 E-value=5.2 Score=35.14 Aligned_cols=64 Identities=14% Similarity=0.081 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHH---HHHHHcCCHHHHHHHHHHHHHhch
Q 003047 359 ALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLG---CIYYQLAKYHTSSVFLSKALSNSA 424 (854)
Q Consensus 359 a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG---~iy~~~g~~~eAi~~f~kAL~~~~ 424 (854)
-.+..|.-++...+.++|+..+.+++++ -++ .+.-+.-+| .+|...|+|.+.+.+--+=+.+..
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k-~~~-~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ 74 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEK-ITD-REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAE 74 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhh-cCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777899999999999999984 332 233444444 477889999999888777666643
No 310
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.70 E-value=6.7 Score=40.66 Aligned_cols=76 Identities=17% Similarity=0.206 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc--cCCCccHHHHHHHHHHHHHcCCHHHHH
Q 003047 336 NLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNR--TEMGISSMFNNNLGCIYYQLAKYHTSS 413 (854)
Q Consensus 336 ~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~--~dp~~~a~~~nnLG~iy~~~g~~~eAi 413 (854)
..++|.+.+-.+-...+ =++++.++.+|..|. ..+.+||+.+|.+++.. .+...++.++..|+.+|.++|++++|-
T Consensus 121 ~d~~A~~~fL~~E~~~~-l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPE-LETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCC-CCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 34557766655544442 367888888988776 78999999999999985 221246889999999999999999884
No 311
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=82.09 E-value=28 Score=42.21 Aligned_cols=74 Identities=9% Similarity=-0.040 Sum_probs=43.5
Q ss_pred HHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHH
Q 003047 332 LLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHT 411 (854)
Q Consensus 332 l~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~e 411 (854)
+..+++++|+.-++.+-... .-..++-..++-|...|+|+-|.++|.++-. ++.--..|-+.|++..
T Consensus 743 i~akew~kai~ildniqdqk---~~s~yy~~iadhyan~~dfe~ae~lf~e~~~----------~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQK---TASGYYGEIADHYANKGDFEIAEELFTEADL----------FKDAIDMYGKAGKWED 809 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhc---cccccchHHHHHhccchhHHHHHHHHHhcch----------hHHHHHHHhccccHHH
Confidence 34455555555554443332 2345667788888888888888888876422 1112244667777777
Q ss_pred HHHHHHH
Q 003047 412 SSVFLSK 418 (854)
Q Consensus 412 Ai~~f~k 418 (854)
|.+.-.+
T Consensus 810 a~kla~e 816 (1636)
T KOG3616|consen 810 AFKLAEE 816 (1636)
T ss_pred HHHHHHH
Confidence 6554333
No 312
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=82.04 E-value=3.4 Score=30.63 Aligned_cols=33 Identities=12% Similarity=0.000 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHCCCcHHHHHH--HHHHHHhcCCC
Q 003047 444 LITYNCGLQYLACGKPVLAARC--FQKSSLVFYKQ 476 (854)
Q Consensus 444 ~~~~nLG~~ll~~Gk~eeAl~~--y~kAL~l~P~~ 476 (854)
+.|+.+|..+...|++++|++. |.-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 5688899999999999999999 55888888764
No 313
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=81.51 E-value=1.7 Score=45.62 Aligned_cols=66 Identities=14% Similarity=-0.001 Sum_probs=55.6
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHH-HHH
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPL-LWL 481 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~-aw~ 481 (854)
..+.++.+.|.+.|.+||.. .+.....|+.+|....+.|+.+.|...|++.++++|++-. +-.
T Consensus 5 ~~~~~D~~aaaely~qal~l----------------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa~ 68 (287)
T COG4976 5 LAESGDAEAAAELYNQALEL----------------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAAL 68 (287)
T ss_pred hcccCChHHHHHHHHHHhhc----------------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchhh
Confidence 34678999999999999998 4566789999999999999999999999999999998633 334
Q ss_pred HHH
Q 003047 482 RLA 484 (854)
Q Consensus 482 ~La 484 (854)
+|+
T Consensus 69 kLa 71 (287)
T COG4976 69 KLA 71 (287)
T ss_pred hHH
Confidence 443
No 314
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.88 E-value=1.9 Score=29.28 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHH
Q 003047 147 VAKLNIAVIWFHLHEYAKALSVLEP 171 (854)
Q Consensus 147 ~~~~n~a~~~~~~~~y~~A~~~~e~ 171 (854)
...+++|.++..+|++++|..++++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 3567888888888888888887753
No 315
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=80.64 E-value=8.7 Score=48.74 Aligned_cols=117 Identities=15% Similarity=0.073 Sum_probs=79.6
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHhhhccCCC--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCcccccccc
Q 003047 361 FLKSQLEYARRNHRKAIKLLLALSNRTEMG--ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFS 438 (854)
Q Consensus 361 ~lla~ly~~~g~~~kAl~~l~kal~~~dp~--~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~ 438 (854)
+...+.......|+.|+..|.++-. .-|+ ..-.+...+|.....+-+-..--.-|.+||..+..+..
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 547 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRE-SFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG---------- 547 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhh-cCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC----------
Confidence 3456778888999999999999887 5553 22356677888776542222222455666655433221
Q ss_pred CCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHH-------HHHHHHHHH
Q 003047 439 QDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLL-------WLRLAECCL 488 (854)
Q Consensus 439 ~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~a-------w~~La~~~i 488 (854)
.+.-+.-|.-.+.+|..+|+|+|-++||.-|++.+|++|.+ -+||=++..
T Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (932)
T PRK13184 548 GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLY 604 (932)
T ss_pred CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHH
Confidence 12234456678899999999999999999999999999865 445555555
No 316
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.45 E-value=15 Score=38.05 Aligned_cols=84 Identities=15% Similarity=0.092 Sum_probs=64.2
Q ss_pred HHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHH
Q 003047 366 LEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLI 445 (854)
Q Consensus 366 ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~ 445 (854)
.+..+-+-++|.+.|.++-.. ..-..+.....||.+|. ..+.++|+..+.++|.+.. .+ ...++++
T Consensus 115 y~Wsr~~d~~A~~~fL~~E~~-~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~----~~--------~~~n~ei 180 (203)
T PF11207_consen 115 YHWSRFGDQEALRRFLQLEGT-PELETAELQYALATYYT-KRDPEKTIQLLLRALELSN----PD--------DNFNPEI 180 (203)
T ss_pred HHhhccCcHHHHHHHHHHcCC-CCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcC----CC--------CCCCHHH
Confidence 345666788999999888762 22234677888888886 5678999999999999832 11 1346789
Q ss_pred HHHHHHHHHHCCCcHHHH
Q 003047 446 TYNCGLQYLACGKPVLAA 463 (854)
Q Consensus 446 ~~nLG~~ll~~Gk~eeAl 463 (854)
+..|+.+++.+|+++.|.
T Consensus 181 l~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 181 LKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHhcchhhhh
Confidence 999999999999999985
No 317
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=80.44 E-value=6.1 Score=34.70 Aligned_cols=55 Identities=20% Similarity=0.155 Sum_probs=46.0
Q ss_pred HHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 003047 665 VELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYL 721 (854)
Q Consensus 665 v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l 721 (854)
=+....+...|+...+++|. .++.++.+..||.+ ..|++..|++.+.+.+--+-+
T Consensus 15 kLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l--~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 15 KLYHQNETQQALQKWRKALEKITDREDRFRVLGYL--IQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 36688999999999999997 67767777777765 458999999999999987766
No 318
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=80.30 E-value=3.6 Score=44.42 Aligned_cols=71 Identities=21% Similarity=0.193 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCcccccc
Q 003047 777 RGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKY-CNHVRFLPSG 847 (854)
Q Consensus 777 ~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~-~~~~~~~~~~ 847 (854)
-..+.-|+=.++...++++.|..+..+.+.++|.+++-+.-.+.++.++|-..-|++-+.. .++.|.+|.-
T Consensus 180 l~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a 251 (269)
T COG2912 180 LSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA 251 (269)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence 5667788999999999999999999999999999999999999999999999999999999 9999998853
No 319
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.18 E-value=12 Score=44.79 Aligned_cols=100 Identities=15% Similarity=0.080 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhhc----cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccc
Q 003047 360 LFLKSQLEYARRNHRKAIKLLLALSNR----TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLL 435 (854)
Q Consensus 360 ~~lla~ly~~~g~~~kAl~~l~kal~~----~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~ 435 (854)
+...|--++...+|..+++.|...+.. ......+...-+|.++|..+.+.+.|.+++++|=+.+|
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~----------- 425 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDR----------- 425 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc-----------
Confidence 345566677778888888888877762 11112345556678888888888888888888777632
Q ss_pred cccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCC
Q 003047 436 TFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYK 475 (854)
Q Consensus 436 ~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~ 475 (854)
..+..-+..--+...-|+-++|+.|..+...+.-+
T Consensus 426 -----~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 426 -----QSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred -----ccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence 22233333445556677777888777777665544
No 320
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=79.15 E-value=40 Score=38.30 Aligned_cols=109 Identities=17% Similarity=0.039 Sum_probs=60.1
Q ss_pred HHHHHHHHhcCHHHHHHHHHHhhhccCCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCC
Q 003047 362 LKSQLEYARRNHRKAIKLLLALSNRTEMG-ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQD 440 (854)
Q Consensus 362 lla~ly~~~g~~~kAl~~l~kal~~~dp~-~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~ 440 (854)
.......++|-+.-|+++.+-.+. .+|. ++-.++.-+-.+-.+.++|+=-+..++....... + .- ..
T Consensus 108 r~i~~L~~RG~~rTAlE~~KlLls-Ldp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~--~--~~-------~~ 175 (360)
T PF04910_consen 108 RYIQSLGRRGCWRTALEWCKLLLS-LDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCY--R--NW-------LS 175 (360)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHh-cCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhh--h--hh-------hh
Confidence 334444455556666666555555 3443 2222333233333444555444444443333100 0 00 00
Q ss_pred ccHHHHHHHHHHHHHCCCc---------------HHHHHHHHHHHHhcCCCHHHHHHHHH
Q 003047 441 KSLLITYNCGLQYLACGKP---------------VLAARCFQKSSLVFYKQPLLWLRLAE 485 (854)
Q Consensus 441 ~~~~~~~nLG~~ll~~Gk~---------------eeAl~~y~kAL~l~P~~~~aw~~La~ 485 (854)
.-+...|.++.+++..++. ++|...+.+|+..+|. +...|.+
T Consensus 176 ~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~---vl~~Ll~ 232 (360)
T PF04910_consen 176 LLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW---VLVPLLD 232 (360)
T ss_pred hCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH---HHHHHHH
Confidence 0124667899999999998 8999999999999998 4444443
No 321
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=78.46 E-value=69 Score=35.54 Aligned_cols=153 Identities=18% Similarity=0.136 Sum_probs=100.8
Q ss_pred HHHcCCHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcC-----C----CCC--CCCCCch
Q 003047 666 ELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSG-----G----DNF--DLPFSGE 734 (854)
Q Consensus 666 ~l~lg~~~~Al~~~~~lL~~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~-----~----~~~--~~~~~~~ 734 (854)
.+..+++.+.+..+++.+... .|=+=+|.|.++++..+| ++++...+...+.. + +.+ ..+|..+
T Consensus 109 ~~~~~~~~~Ll~~~E~sl~~~----pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L~~L~F~DGtPFad~ 183 (301)
T TIGR03362 109 LLAQADWAALLQRVEQSLSLA----PFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGLLELKFSDGTPFADD 183 (301)
T ss_pred HHhCCCHHHHHHHHHHHHHhC----chhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcChhhcccCCCCCCCCH
Confidence 336788999999999988762 355678889999999999 57777666554432 0 111 3468888
Q ss_pred hhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---
Q 003047 735 DCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRS--- 811 (854)
Q Consensus 735 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~--- 811 (854)
+...|+........+ +.. .|. +.............-+...+..+.+++|...++..+.-.+..
T Consensus 184 ~T~~WL~~~~~~~~~----~~~-------~~~---~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~r 249 (301)
T TIGR03362 184 ETRAWLAQHATRSNA----ASV-------APV---AEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRER 249 (301)
T ss_pred HHHHHHHhccccccc----ccc-------ccc---ccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHH
Confidence 999998764211100 000 000 000000112223345778888999999999999876644332
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003047 812 TEATLTAIYVDLMLGKSQEALAKLKY 837 (854)
Q Consensus 812 ~~a~~l~~y~~L~~G~~~eA~~~lk~ 837 (854)
....+..+-+....|+.+-|..+|..
T Consensus 250 f~~rL~~A~l~~~~g~~~lA~~ll~~ 275 (301)
T TIGR03362 250 FHWRLLLARLLEQAGKAELAQQLYAA 275 (301)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56788888889999999999999976
No 322
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=78.21 E-value=1.3e+02 Score=34.38 Aligned_cols=136 Identities=18% Similarity=0.079 Sum_probs=100.2
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHc
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQL 406 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~ 406 (854)
|+...+. -+...|......++++. |+...+-+.-+..++..|+..|+-++++.+-+ .+|+ +.+. +..++.+.
T Consensus 236 kA~s~ld-adp~~Ar~~A~~a~KL~--pdlvPaav~AAralf~d~~~rKg~~ilE~aWK-~ePH--P~ia--~lY~~ar~ 307 (531)
T COG3898 236 KAMSLLD-ADPASARDDALEANKLA--PDLVPAAVVAARALFRDGNLRKGSKILETAWK-AEPH--PDIA--LLYVRARS 307 (531)
T ss_pred HHHHHhc-CChHHHHHHHHHHhhcC--CccchHHHHHHHHHHhccchhhhhhHHHHHHh-cCCC--hHHH--HHHHHhcC
Confidence 4443333 35677888889999999 99999999999999999999999999999999 7884 4433 44555566
Q ss_pred CCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 003047 407 AKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAEC 486 (854)
Q Consensus 407 g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~ 486 (854)
|+- ++.-++++-.+ ..+ .+.+.+..+-.+.+-+..|+|..|...-+.+..+.|... ++.-|+.+
T Consensus 308 gdt--a~dRlkRa~~L-~sl------------k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres-~~lLlAdI 371 (531)
T COG3898 308 GDT--ALDRLKRAKKL-ESL------------KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES-AYLLLADI 371 (531)
T ss_pred CCc--HHHHHHHHHHH-Hhc------------CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh-HHHHHHHH
Confidence 654 44445554443 111 133567777889999999999999999999999998743 34445544
No 323
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=76.86 E-value=11 Score=48.50 Aligned_cols=137 Identities=13% Similarity=0.064 Sum_probs=105.5
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc------cCCCccHH
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIAR------GKDSSLALFLKSQLEYARRNHRKAIKLLLALSNR------TEMGISSM 394 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~------~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~------~dp~~~a~ 394 (854)
..+.-+..+.+.+|.+ +.+.++... ||+....+-.++.++...|++++|+..-.++.-. .++.....
T Consensus 938 ~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~ 1016 (1236)
T KOG1839|consen 938 QGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKL 1016 (1236)
T ss_pred hhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHH
Confidence 4566777888888888 666655552 5888999999999999999999999998876642 22223466
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh
Q 003047 395 FNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLV 472 (854)
Q Consensus 395 ~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l 472 (854)
.|.++....+..++...|+..+.+++.++.=.-.+ ..|+-+....|++..+...++++-|+++.+.|+.+
T Consensus 1017 ~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge--------~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1017 AYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGE--------DHPPTALSFINLELLLLGVEEADTALRYLESALAK 1086 (1236)
T ss_pred HhhHHHHHHHhccCccchhhhHHHHHHhhccccCC--------CCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999999999973110011 13444556678999999999999999999999983
No 324
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=76.77 E-value=1.1e+02 Score=35.13 Aligned_cols=149 Identities=13% Similarity=0.005 Sum_probs=95.1
Q ss_pred HHHhcCHHHHHHHHHHHHHhcCCCCC--------HHHHHHHHHHHHHhcCHHHHHHHHHHhhhc----cCCCccHHHHHH
Q 003047 331 LLLTRNLKHAKREVKLAMNIARGKDS--------SLALFLKSQLEYARRNHRKAIKLLLALSNR----TEMGISSMFNNN 398 (854)
Q Consensus 331 yl~~~~~~~A~~elk~al~~~~~P~~--------~~a~~lla~ly~~~g~~~kAl~~l~kal~~----~dp~~~a~~~nn 398 (854)
..-++++++|.+.-+..+..- .-.| ...||.+...|-..|+...=-..+...+.. .+....+...|-
T Consensus 136 l~d~K~~kea~~~~~~~l~~i-~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~ 214 (493)
T KOG2581|consen 136 LIDQKEYKEADKISDALLASI-SIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINL 214 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHH-HhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHH
Confidence 344567777776665554332 0111 234566777777888866666666555541 233345666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHH
Q 003047 399 LGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPL 478 (854)
Q Consensus 399 LG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~ 478 (854)
|-..|..-+.|+.|.....|+.-- . ...++..+..+|.+|.+-.-+++|..|.+||.+|+...|.+..
T Consensus 215 LLr~yL~n~lydqa~~lvsK~~~p-----e-------~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~a 282 (493)
T KOG2581|consen 215 LLRNYLHNKLYDQADKLVSKSVYP-----E-------AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAA 282 (493)
T ss_pred HHHHHhhhHHHHHHHHHhhcccCc-----c-------ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhh
Confidence 777888888888888777665321 0 0112245677888999999999999999999999999998654
Q ss_pred H----HHHHHHHHHHHHh
Q 003047 479 L----WLRLAECCLMALE 492 (854)
Q Consensus 479 a----w~~La~~~i~~~~ 492 (854)
+ ..++-.|++.++.
T Consensus 283 lGf~q~v~k~~ivv~ll~ 300 (493)
T KOG2581|consen 283 LGFRQQVNKLMIVVELLL 300 (493)
T ss_pred hhHHHHHHHHHHHHHHHc
Confidence 4 2333445554333
No 325
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=76.69 E-value=52 Score=36.69 Aligned_cols=134 Identities=13% Similarity=0.003 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcC-----CHHHH
Q 003047 338 KHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLA-----KYHTS 412 (854)
Q Consensus 338 ~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g-----~~~eA 412 (854)
+.-+.-++++++.+ |++..-+...=.........++..+-+++++. .+|+ ....| ++.+-+.++ .++..
T Consensus 48 E~klsilerAL~~n--p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~-~~~~-~~~LW--~~yL~~~q~~~~~f~v~~~ 121 (321)
T PF08424_consen 48 ERKLSILERALKHN--PDSERLLLGYLEEGEKVWDSEKLAKKWEELLF-KNPG-SPELW--REYLDFRQSNFASFTVSDV 121 (321)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HCCC-ChHHH--HHHHHHHHHHhccCcHHHH
Confidence 33455667888888 99998887777777788899999999999999 6784 46667 555555555 58899
Q ss_pred HHHHHHHHHhchhcccCC--ccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCH
Q 003047 413 SVFLSKALSNSASLRKDK--PLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQP 477 (854)
Q Consensus 413 i~~f~kAL~~~~~l~~~~--~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~ 477 (854)
...|.++|..+....... .-............++..+...+.+.|..+.|+.+++-.++++=-.|
T Consensus 122 ~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P 188 (321)
T PF08424_consen 122 RDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRP 188 (321)
T ss_pred HHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCc
Confidence 999999999855432110 00000000011245667888889999999999999999999874333
No 326
>PRK12798 chemotaxis protein; Reviewed
Probab=76.22 E-value=1.6e+02 Score=34.13 Aligned_cols=231 Identities=15% Similarity=0.022 Sum_probs=153.2
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHH-HHHHHHc
Q 003047 328 VRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNL-GCIYYQL 406 (854)
Q Consensus 328 ~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnL-G~iy~~~ 406 (854)
+-+|++.|--- +.++.++..+. ..+.+.-+..|.+-|..|+-.+|.+.+..+-...-|.. ...+..| .......
T Consensus 87 a~iy~lSGGnP---~vlr~L~~~d~-~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~-lg~~laLv~a~l~~~ 161 (421)
T PRK12798 87 ALIYLLSGGNP---ATLRKLLARDK-LGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAE-LGAYLALVQGNLMVA 161 (421)
T ss_pred HHhhHhcCCCH---HHHHHHHHcCC-CChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCch-hhhHHHHHHHHHhcc
Confidence 45677777655 45567777771 34778888999999999999999999988766322211 2233333 3333456
Q ss_pred CCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHH-HHHCCCcHHHHHHHHHHHHhcCCCHHHHHHH--
Q 003047 407 AKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQ-YLACGKPVLAARCFQKSSLVFYKQPLLWLRL-- 483 (854)
Q Consensus 407 g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~-ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~L-- 483 (854)
.++.+|+++|..+--..|.- --.++-....+. ..+.|+.+++..+-.+.+..+++++.++.-.
T Consensus 162 ~dP~~Al~~lD~aRLlaPGT--------------LvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~ 227 (421)
T PRK12798 162 TDPATALKLLDQARLLAPGT--------------LVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQR 227 (421)
T ss_pred cCHHHHHHHHHHHHHhCCch--------------HHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHH
Confidence 78999999999998774420 012333333333 3788999999999999999998888764433
Q ss_pred -HHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 003047 484 -AECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLN 562 (854)
Q Consensus 484 -a~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~n 562 (854)
..... +.. .. . .++ .+..
T Consensus 228 F~~~~~---~~~--d~---------------------------------~---------------------~~~--~l~~ 246 (421)
T PRK12798 228 FVDLVV---RLD--DE---------------------------------I---------------------RDA--RLVE 246 (421)
T ss_pred HHHHHH---hcc--cc---------------------------------c---------------------cHH--HHHH
Confidence 33322 110 00 0 001 1222
Q ss_pred HHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccc
Q 003047 563 ALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSY 642 (854)
Q Consensus 563 AL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~ 642 (854)
.|...+...
T Consensus 247 ~ls~~d~~~----------------------------------------------------------------------- 255 (421)
T PRK12798 247 ILSFMDPER----------------------------------------------------------------------- 255 (421)
T ss_pred HHHhcCchh-----------------------------------------------------------------------
Confidence 222211100
Q ss_pred hhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 003047 643 YEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYL 721 (854)
Q Consensus 643 ~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l 721 (854)
+..+|..+|...+-.|+...|.-..++++...+....-.-.+++|.+-+.+-...+++|+..+...-
T Consensus 256 ------------q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~ 322 (421)
T PRK12798 256 ------------QRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQID 322 (421)
T ss_pred ------------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCC
Confidence 1135667788999999999999999999975455556667888999999999999999999997654
No 327
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=75.14 E-value=6.4 Score=27.00 Aligned_cols=31 Identities=29% Similarity=0.405 Sum_probs=27.3
Q ss_pred CCcHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 003047 457 GKPVLAARCFQKSSLVFYKQPLLWLRLAECC 487 (854)
Q Consensus 457 Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~ 487 (854)
|+++.|...|++++...|.++.+|...+...
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 5678899999999999999999999887643
No 328
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=75.00 E-value=8.1 Score=41.39 Aligned_cols=62 Identities=8% Similarity=-0.103 Sum_probs=47.3
Q ss_pred HHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHH
Q 003047 376 AIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLA 455 (854)
Q Consensus 376 Al~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~ 455 (854)
|..+|.++.. ..|. ....||.||.++...|+.-.|+-+|-|++.. ..+.+.+..|+...+..
T Consensus 1 A~~~Y~~A~~-l~P~-~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~----------------~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIR-LLPS-NGNPYNQLAVLASYQGDDLDAVYYYIRSLAV----------------RIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHH-H-TT-BSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS----------------SB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHH-hCCC-CCCcccchhhhhccccchHHHHHHHHHHHhc----------------CCCcHHHHHHHHHHHHH
Confidence 6788888888 6784 5778999999999999999999999999976 23456677777777766
No 329
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=74.18 E-value=1.4e+02 Score=35.90 Aligned_cols=154 Identities=12% Similarity=0.125 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
+++.-++.....|+.+-|...+.++.++.. |+-+..+++-+.+.-..|++..|..+|+++.. .-|+.....+..++.
T Consensus 333 fWiky~~~m~~~~~~~~~~~~~~~~~~i~~-k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~-e~pg~v~~~l~~~~~- 409 (577)
T KOG1258|consen 333 FWIKYARWMESSGDVSLANNVLARACKIHV-KKTPIIHLLEARFEESNGNFDDAKVILQRIES-EYPGLVEVVLRKINW- 409 (577)
T ss_pred HHHHHHHHHHHcCchhHHHHHHHhhhhhcC-CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHh-hCCchhhhHHHHHhH-
Confidence 334445556667888888888888888884 88888888889999999999999999999988 447544444443444
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHH-HHHHCCCcHHHHHHHHHHHHhcCCCHHHHH
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGL-QYLACGKPVLAARCFQKSSLVFYKQPLLWL 481 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~-~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~ 481 (854)
..++|+.+.+-. +.........-..+. ......+.+... .+.-.++.+.|...+.+++++.|++...|.
T Consensus 410 e~r~~~~~~~~~-~~~l~s~~~~~~~~~---------~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~ 479 (577)
T KOG1258|consen 410 ERRKGNLEDANY-KNELYSSIYEGKENN---------GILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYL 479 (577)
T ss_pred HHHhcchhhhhH-HHHHHHHhcccccCc---------chhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHH
Confidence 445677666653 222222211001110 011223333333 345567799999999999999999999999
Q ss_pred HHHHHHHH
Q 003047 482 RLAECCLM 489 (854)
Q Consensus 482 ~La~~~i~ 489 (854)
.+-..+..
T Consensus 480 ~~~~~~~~ 487 (577)
T KOG1258|consen 480 ELIRFELI 487 (577)
T ss_pred HHHHHHHh
Confidence 99988773
No 330
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=73.42 E-value=15 Score=40.12 Aligned_cols=63 Identities=13% Similarity=-0.085 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003047 358 LALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 358 ~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
.++..++..+...|+++.+++.+++.+. .+|. ....|..+-..|...|+...|+..|++.-..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~-~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIE-LDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHh-cCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4555566667777777777777777777 6773 4556666777777777777777777776553
No 331
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=73.26 E-value=9.5 Score=44.53 Aligned_cols=105 Identities=8% Similarity=-0.109 Sum_probs=77.4
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhchhcccCC
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQL---AKYHTSSVFLSKALSNSASLRKDK 430 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~---g~~~eAi~~f~kAL~~~~~l~~~~ 430 (854)
|.+++-.+.-|+=-+..+....|+..|.+++. .-| ...+.|-|.+.++.+. |+.-.|+.-...|+.+
T Consensus 371 ~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q-~~~-~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl-------- 440 (758)
T KOG1310|consen 371 PENIEKFKTEGNDGLYESIVSGAISHYSRAIQ-YVP-DAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL-------- 440 (758)
T ss_pred hHHHHHHHhhccchhhhHHHHHHHHHHHHHhh-hcc-chhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC--------
Confidence 34444444555656666778888999999888 566 4577777787777664 4566677777777776
Q ss_pred ccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC
Q 003047 431 PLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQ 476 (854)
Q Consensus 431 ~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~ 476 (854)
.+....++|-|+.++..++++.+|++|...+...+|.+
T Consensus 441 --------n~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 441 --------NPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred --------ChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence 23345789999999999999999999998888888844
No 332
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=72.36 E-value=53 Score=38.48 Aligned_cols=108 Identities=10% Similarity=0.020 Sum_probs=59.6
Q ss_pred hcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHHhcCHHHHHHHHHH-------
Q 003047 311 DRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSL-ALFLKSQLEYARRNHRKAIKLLLA------- 382 (854)
Q Consensus 311 ~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~-a~~lla~ly~~~g~~~kAl~~l~k------- 382 (854)
+++.+..-+...+..++.+..+..++++++.+.++.-.-+ |.-+. .....+..+..+|.++.|+.+-+.
T Consensus 251 Dr~~~v~~~~ld~~~~~fk~av~~~d~~~v~~~i~~~~ll---~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeL 327 (443)
T PF04053_consen 251 DRDGNVISYELDLSELEFKTAVLRGDFEEVLRMIAASNLL---PNIPKDQGQSIARFLEKKGYPELALQFVTDPDHRFEL 327 (443)
T ss_dssp -TT--EEEEE--HHHHHHHHHHHTT-HHH-----HHHHTG---GG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHH
T ss_pred ECCCCEEEEEECHHHHHHHHHHHcCChhhhhhhhhhhhhc---ccCChhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHH
Confidence 4444444455667788899999999999976666422111 22222 233445555566666666654322
Q ss_pred hhh---------ccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003047 383 LSN---------RTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALS 421 (854)
Q Consensus 383 al~---------~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~ 421 (854)
+++ .......+..|-.||....++|+++.|.++|+++=.
T Consensus 328 Al~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 328 ALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp HHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred HHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 221 011213467899999999999999999999999644
No 333
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=72.27 E-value=34 Score=33.43 Aligned_cols=66 Identities=15% Similarity=0.102 Sum_probs=49.5
Q ss_pred HHHHHHHHHHH---HhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 003047 358 LALFLKSQLEY---ARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNS 423 (854)
Q Consensus 358 ~a~~lla~ly~---~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~ 423 (854)
...|.+|..+. ...+.++-+.+++.+++...|.......+-|+.-|.+.|+|++++.|.+..|...
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 34566666655 4556788999999999633444444555569999999999999999999999973
No 334
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=71.81 E-value=27 Score=40.84 Aligned_cols=90 Identities=11% Similarity=0.030 Sum_probs=66.7
Q ss_pred HHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHH
Q 003047 375 KAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYL 454 (854)
Q Consensus 375 kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll 454 (854)
+-..+|+.++. .-++ ....|.+.-.+-.+.+.+.+--..|.++|.. .|.++.+|...+.-.+
T Consensus 89 rIv~lyr~at~-rf~~-D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~----------------Hp~~~dLWI~aA~wef 150 (568)
T KOG2396|consen 89 RIVFLYRRATN-RFNG-DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAK----------------HPNNPDLWIYAAKWEF 150 (568)
T ss_pred HHHHHHHHHHH-hcCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHHh----------------CCCCchhHHhhhhhHH
Confidence 44556677776 3443 2456665544445555588888999999987 4556788888888888
Q ss_pred HCCC-cHHHHHHHHHHHHhcCCCHHHHHH
Q 003047 455 ACGK-PVLAARCFQKSSLVFYKQPLLWLR 482 (854)
Q Consensus 455 ~~Gk-~eeAl~~y~kAL~l~P~~~~aw~~ 482 (854)
..+. .+.|...|.++|..+|++|.+|..
T Consensus 151 e~n~ni~saRalflrgLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 151 EINLNIESARALFLRGLRFNPDSPKLWKE 179 (568)
T ss_pred hhccchHHHHHHHHHHhhcCCCChHHHHH
Confidence 8888 888999999999999999998753
No 335
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=71.27 E-value=6.2 Score=29.68 Aligned_cols=30 Identities=20% Similarity=0.112 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 003047 394 MFNNNLGCIYYQLAKYHTSSVFLSKALSNS 423 (854)
Q Consensus 394 ~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~ 423 (854)
.+|..||.+-...++|++|+.-|+++|.+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467789999999999999999999999984
No 336
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=70.96 E-value=81 Score=35.15 Aligned_cols=78 Identities=6% Similarity=-0.123 Sum_probs=56.0
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcC------------HHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCC
Q 003047 341 KREVKLAMNIARGKDSSLALFLKSQLEYARRN------------HRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAK 408 (854)
Q Consensus 341 ~~elk~al~~~~~P~~~~a~~lla~ly~~~g~------------~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~ 408 (854)
..++++.+..+ |.|+.+|+.+.......-. .++-+.+|+++++ .+|+ ....+..+-.+..+...
T Consensus 5 ~~el~~~v~~~--P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~-~np~-~~~L~l~~l~~~~~~~~ 80 (321)
T PF08424_consen 5 TAELNRRVREN--PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALK-HNPD-SERLLLGYLEEGEKVWD 80 (321)
T ss_pred HHHHHHHHHhC--cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHhCC
Confidence 46788889999 9999999887766554322 5667778888888 5774 45556555555666677
Q ss_pred HHHHHHHHHHHHHh
Q 003047 409 YHTSSVFLSKALSN 422 (854)
Q Consensus 409 ~~eAi~~f~kAL~~ 422 (854)
.++...-+++++..
T Consensus 81 ~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 81 SEKLAKKWEELLFK 94 (321)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777778887776
No 337
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.66 E-value=15 Score=43.60 Aligned_cols=63 Identities=16% Similarity=0.147 Sum_probs=44.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC--------CCHH------------HHHH-HHHHHHhcCCHHHHHHHHHhcC
Q 003047 781 YVNIAAMFAMQGEFERAHHFVTQALSILP--------RSTE------------ATLT-AIYVDLMLGKSQEALAKLKYCN 839 (854)
Q Consensus 781 ~~NLa~~~~~~g~~e~A~~~~~~Al~~~P--------~~~~------------a~~l-~~y~~L~~G~~~eA~~~lk~~~ 839 (854)
|-.||.+....|++..|.+|+.+|...-. ++.. -.++ .-..++..|++++++++|-+-+
T Consensus 669 w~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 669 WRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHhcC
Confidence 56688888999999999999999854321 1111 1122 2334778999999999998855
Q ss_pred CCcc
Q 003047 840 HVRF 843 (854)
Q Consensus 840 ~~~~ 843 (854)
..|+
T Consensus 749 r~pe 752 (794)
T KOG0276|consen 749 RLPE 752 (794)
T ss_pred cCcH
Confidence 5554
No 338
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=70.10 E-value=2.7e+02 Score=34.23 Aligned_cols=98 Identities=12% Similarity=0.086 Sum_probs=64.6
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003047 342 REVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALS 421 (854)
Q Consensus 342 ~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~ 421 (854)
.+++.+...- |++...+=.+|..+...|.-++|.+.|.+. ..|. +.+. .|++ ++++.+|.+.-++ ++
T Consensus 839 ~~LE~la~~L--pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~pk--aAv~---tCv~--LnQW~~avelaq~-~~ 905 (1189)
T KOG2041|consen 839 GELEVLARTL--PEDSELLPVMADMFTSVGMCDQAVEAYLRR---SLPK--AAVH---TCVE--LNQWGEAVELAQR-FQ 905 (1189)
T ss_pred hhHHHHHHhc--CcccchHHHHHHHHHhhchHHHHHHHHHhc---cCcH--HHHH---HHHH--HHHHHHHHHHHHh-cc
Confidence 4556666666 999999999999999999999999999775 4562 2222 2443 4567777664332 22
Q ss_pred hchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHH
Q 003047 422 NSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKS 469 (854)
Q Consensus 422 ~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kA 469 (854)
+ + .--...-.-+..++..++..+|++.++++
T Consensus 906 l-~----------------qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 906 L-P----------------QVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred c-h----------------hHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 1 1 11122333366677778888888888776
No 339
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.86 E-value=2.4e+02 Score=33.56 Aligned_cols=99 Identities=12% Similarity=0.046 Sum_probs=73.6
Q ss_pred HHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-chhcccCCccccccccCCccHHHHHHHHHHH
Q 003047 375 KAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSN-SASLRKDKPLKLLTFSQDKSLLITYNCGLQY 453 (854)
Q Consensus 375 kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~-~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~l 453 (854)
...+.+..... ..|. ++....+-+.++.-.|+.+.|+.+|...+.. .+++ ..-.++.+|.++
T Consensus 251 ~~~~~Ll~~~~-~~p~-ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~---------------~~l~~fE~aw~~ 313 (546)
T KOG3783|consen 251 ECEKALKKYRK-RYPK-GALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQV---------------KSLMVFERAWLS 313 (546)
T ss_pred HHHHHhHHHHH-hCCC-CccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHH---------------HHHHHHHHHHHH
Confidence 33333334434 4563 4556666788888899999999999998883 1112 356788999999
Q ss_pred HHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 003047 454 LACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMA 490 (854)
Q Consensus 454 l~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~ 490 (854)
..+.+|..|...+.....+..=+--.+..++-||...
T Consensus 314 v~~~~~~~aad~~~~L~desdWS~a~Y~Yfa~cc~l~ 350 (546)
T KOG3783|consen 314 VGQHQYSRAADSFDLLRDESDWSHAFYTYFAGCCLLQ 350 (546)
T ss_pred HHHHHHHHHhhHHHHHHhhhhhhHHHHHHHHHHHHhc
Confidence 9999999999999998888777667788888888843
No 340
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=69.38 E-value=7.3 Score=30.32 Aligned_cols=26 Identities=15% Similarity=0.423 Sum_probs=24.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003047 781 YVNIAAMFAMQGEFERAHHFVTQALS 806 (854)
Q Consensus 781 ~~NLa~~~~~~g~~e~A~~~~~~Al~ 806 (854)
.++||.+|..+|+.+.|.+.++.+++
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 37899999999999999999999995
No 341
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=69.27 E-value=1.7e+02 Score=31.60 Aligned_cols=83 Identities=18% Similarity=0.119 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCcccc
Q 003047 355 DSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKL 434 (854)
Q Consensus 355 ~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~ 434 (854)
.++.-+..+|..++..|++.+|..+|-..- +| ...++..+-......|...+.--++-|++
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~---~~--~~~~~~~ll~~~~~~~~~~e~dlfi~RaV-------------- 148 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGT---DP--SAFAYVMLLEEWSTKGYPSEADLFIARAV-------------- 148 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS----HH--HHHHHHHHHHHHHHHTSS--HHHHHHHHH--------------
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcC---Ch--hHHHHHHHHHHHHHhcCCcchhHHHHHHH--------------
Confidence 456677788888888888888887775432 23 12333223333334455555544433332
Q ss_pred ccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh
Q 003047 435 LTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLV 472 (854)
Q Consensus 435 ~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l 472 (854)
..|+..++...|...+...++.
T Consensus 149 ----------------L~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 149 ----------------LQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp ----------------HHHHHTTBHHHHHHHHHHHHHH
T ss_pred ----------------HHHHHhcCHHHHHHHHHHHHHH
Confidence 3366777777777776666654
No 342
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=68.24 E-value=1.1e+02 Score=35.57 Aligned_cols=28 Identities=25% Similarity=0.489 Sum_probs=24.6
Q ss_pred HHHHHHHHCCCcHHHHHHHHHHHHhcCC
Q 003047 448 NCGLQYLACGKPVLAARCFQKSSLVFYK 475 (854)
Q Consensus 448 nLG~~ll~~Gk~eeAl~~y~kAL~l~P~ 475 (854)
-.|..|...|+...|+.||.+|+.++..
T Consensus 375 LAg~~~~~~~~~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 375 LAGHRYSKAGQKKHALRCYKQALQVYEG 402 (414)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 4488999999999999999999998863
No 343
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=68.10 E-value=14 Score=27.32 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHH--HHHHHhhCCC
Q 003047 780 LYVNIAAMFAMQGEFERAHHF--VTQALSILPR 810 (854)
Q Consensus 780 ~~~NLa~~~~~~g~~e~A~~~--~~~Al~~~P~ 810 (854)
.++.+|.++..+|++++|++. ++-+..++|.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 467899999999999999999 5577666654
No 344
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=68.09 E-value=7.3 Score=44.70 Aligned_cols=65 Identities=22% Similarity=0.111 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCC-----CChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhc
Q 003047 657 ALLANLAYVELEMENPVKALAAARSLLELP-----DCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLS 722 (854)
Q Consensus 657 ~~l~~la~v~l~lg~~~~Al~~~~~lL~~p-----~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~ 722 (854)
-.+..|..|+.-+|||..|+...+.+--.. ..++.+..+ .-|.+-|++|++||.||+.+|...+.
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~-~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHIST-YYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheeh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677889999999999999987754211 123333333 24677899999999999999999884
No 345
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=67.88 E-value=35 Score=29.77 Aligned_cols=39 Identities=18% Similarity=0.274 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------cCCCCHHHH
Q 003047 26 VTATLAKEAALYFQSRKFDECLDLLKQLLD-------KKPDDPKIL 64 (854)
Q Consensus 26 ~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~-------~~~~~~~~l 64 (854)
.+..++.+|+++=..|+|.+|+.+|+++.+ .-|+++.-.
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~ 50 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRL 50 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 477899999999999999999988888776 366666543
No 346
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=66.93 E-value=66 Score=37.68 Aligned_cols=76 Identities=16% Similarity=0.020 Sum_probs=55.1
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHc
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQL 406 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~ 406 (854)
|+.+.++.|+++.|.+..+ . .+++.-|-.+|...+.+|+++-|.++|+++-. +..|..+|...
T Consensus 324 rFeLAl~lg~L~~A~~~a~-----~--~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~ 386 (443)
T PF04053_consen 324 RFELALQLGNLDIALEIAK-----E--LDDPEKWKQLGDEALRQGNIELAEECYQKAKD----------FSGLLLLYSST 386 (443)
T ss_dssp HHHHHHHCT-HHHHHHHCC-----C--CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHC
T ss_pred HhHHHHhcCCHHHHHHHHH-----h--cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------ccccHHHHHHh
Confidence 6778889999998887542 2 56778999999999999999999999999633 23466788888
Q ss_pred CCHHHHHHHHHHH
Q 003047 407 AKYHTSSVFLSKA 419 (854)
Q Consensus 407 g~~~eAi~~f~kA 419 (854)
|+.+.=.+.-+.|
T Consensus 387 g~~~~L~kl~~~a 399 (443)
T PF04053_consen 387 GDREKLSKLAKIA 399 (443)
T ss_dssp T-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 8864433333333
No 347
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=66.93 E-value=28 Score=38.06 Aligned_cols=66 Identities=11% Similarity=0.046 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Q 003047 318 DLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSN 385 (854)
Q Consensus 318 ~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~ 385 (854)
+...+....++..++..++++.+.+.++++++.+ |-+-..+..+=..|+..|+..+|+..|.+.-.
T Consensus 150 e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 150 ELFIKALTKLAEALIACGRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3333455557888899999999999999999999 99999999999999999999999999999876
No 348
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=66.67 E-value=26 Score=42.32 Aligned_cols=103 Identities=9% Similarity=0.051 Sum_probs=64.1
Q ss_pred HHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcc------cCCccccccccC
Q 003047 366 LEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLR------KDKPLKLLTFSQ 439 (854)
Q Consensus 366 ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~------~~~~l~~~~~~~ 439 (854)
++...|++-.-..++..--...+......+++++|..+..+..+++|.+||.+.-..-.++. .-+.++.....-
T Consensus 769 lr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~L 848 (1189)
T KOG2041|consen 769 LRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTL 848 (1189)
T ss_pred HHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhc
Confidence 34444555444444433211111223467899999999999999999999998654321110 011222222233
Q ss_pred CccHHHHHHHHHHHHHCCCcHHHHHHHHH
Q 003047 440 DKSLLITYNCGLQYLACGKPVLAARCFQK 468 (854)
Q Consensus 440 ~~~~~~~~nLG~~ll~~Gk~eeAl~~y~k 468 (854)
|.+.+.+--+|..+..-|..++|.++|.+
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 44556777889999999999999998866
No 349
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=66.66 E-value=9 Score=33.41 Aligned_cols=33 Identities=15% Similarity=0.135 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003047 24 LSVTATLAKEAALYFQSRKFDECLDLLKQLLDK 56 (854)
Q Consensus 24 ~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~ 56 (854)
++++..|+.+|+..=..|+|++|+++|.++++.
T Consensus 3 l~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 3 LERAHFLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999984
No 350
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=66.29 E-value=1.1e+02 Score=33.38 Aligned_cols=101 Identities=10% Similarity=-0.017 Sum_probs=82.1
Q ss_pred cCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHH
Q 003047 371 RNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLA-KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNC 449 (854)
Q Consensus 371 g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g-~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nL 449 (854)
.+-..|+++-..++. .+|.+ -.+|.-.-.|...++ +..+=+.++..+++. .+++..+|.+.
T Consensus 57 E~S~RAl~LT~d~i~-lNpAn-YTVW~yRr~iL~~l~~dL~~El~~l~eI~e~----------------npKNYQvWHHR 118 (318)
T KOG0530|consen 57 EKSPRALQLTEDAIR-LNPAN-YTVWQYRRVILRHLMSDLNKELEYLDEIIED----------------NPKNYQVWHHR 118 (318)
T ss_pred ccCHHHHHHHHHHHH-hCccc-chHHHHHHHHHHHhHHHHHHHHHHHHHHHHh----------------CccchhHHHHH
Confidence 677788888888888 78854 456665666665554 567777888887776 46788999999
Q ss_pred HHHHHHCCCcH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003047 450 GLQYLACGKPV-LAARCFQKSSLVFYKQPLLWLRLAECCLM 489 (854)
Q Consensus 450 G~~ll~~Gk~e-eAl~~y~kAL~l~P~~~~aw~~La~~~i~ 489 (854)
-.+....|++. .-++....++..+..+..+|...--||..
T Consensus 119 r~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~ 159 (318)
T KOG0530|consen 119 RVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRF 159 (318)
T ss_pred HHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHH
Confidence 99999999988 88999999999999999999998877764
No 351
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=66.02 E-value=19 Score=41.60 Aligned_cols=131 Identities=11% Similarity=-0.023 Sum_probs=90.5
Q ss_pred HHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHH
Q 003047 332 LLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHT 411 (854)
Q Consensus 332 l~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~e 411 (854)
+..|++-.|-+.+..++... |.++.-..+.+.+....|.|+.|+..+..+-+....... +.--+-.-.+.+|++++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~--~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~--~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQ--QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDS--TLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhC--CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCch--HHHHHHHhhhchhhHHH
Confidence 45799999999999999999 999999999999999999999999998776553222221 22223455568899999
Q ss_pred HHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHH
Q 003047 412 SSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLR 482 (854)
Q Consensus 412 Ai~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~ 482 (854)
|...-.-.|.. + -..++++--.+...-.+|-+++|+.+.++.+.+.|..-.-|.+
T Consensus 376 a~s~a~~~l~~------e----------ie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~ 430 (831)
T PRK15180 376 ALSTAEMMLSN------E----------IEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVN 430 (831)
T ss_pred HHHHHHHHhcc------c----------cCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccccee
Confidence 87755554443 0 0112333223444555666788888888888888765554544
No 352
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=65.62 E-value=11 Score=39.88 Aligned_cols=55 Identities=9% Similarity=-0.045 Sum_probs=41.6
Q ss_pred HHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 003047 368 YARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSA 424 (854)
Q Consensus 368 ~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~ 424 (854)
...++.+-|.+.|.+++. .-| .+..-|..+|.+..+.|+.+.|...|++.|++.+
T Consensus 6 ~~~~D~~aaaely~qal~-lap-~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 6 AESGDAEAAAELYNQALE-LAP-EWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred cccCChHHHHHHHHHHhh-cCc-hhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 455777778888888887 566 4677777788888888888888888888888754
No 353
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=64.08 E-value=68 Score=41.02 Aligned_cols=111 Identities=14% Similarity=0.214 Sum_probs=82.5
Q ss_pred HcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCc
Q 003047 39 QSRKFDECLDLLKQLLDKKPD---DPKILHNIAIAEYFRDG-CTDPKKLLEALNNVKNKSEELARATGEQTEGGGNIGSK 114 (854)
Q Consensus 39 ~~g~y~~Al~~l~~~l~~~~~---~~~~l~nla~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~ 114 (854)
.-..|++|+..|++.-.-.|+ --++++-+|++-..+.. -.++..+.+++.++.+-..
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 547 (932)
T PRK13184 487 AEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG------------------- 547 (932)
T ss_pred hhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-------------------
Confidence 345699999999999988766 56899999998777744 3355777888887777551
Q ss_pred ccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchh--hHHHHHHHHH
Q 003047 115 VGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDET--TALQICLLLL 192 (854)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~--~~~~~~l~l~ 192 (854)
-+.-+..|...|.+|..+|+|++-++.|+-+++....-.+- +...+++-|=
T Consensus 548 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (932)
T PRK13184 548 ---------------------------GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLH 600 (932)
T ss_pred ---------------------------CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence 12245578899999999999999999999999977655543 3445555554
Q ss_pred HHH
Q 003047 193 DVA 195 (854)
Q Consensus 193 ~vy 195 (854)
+..
T Consensus 601 ~~~ 603 (932)
T PRK13184 601 ESL 603 (932)
T ss_pred HHH
Confidence 443
No 354
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=63.72 E-value=2.6e+02 Score=31.60 Aligned_cols=158 Identities=16% Similarity=0.019 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-----cC
Q 003047 318 DLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIA----RGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNR-----TE 388 (854)
Q Consensus 318 ~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~----~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~-----~d 388 (854)
-.+..++....++|...+++.+|+..+..++..- +++.-.+.+++-...|+...+..||-..+..+-.. -.
T Consensus 125 FLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcp 204 (411)
T KOG1463|consen 125 FLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCP 204 (411)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccC
Confidence 3567788888999999999999998877776543 33555677888899999999999999999887662 24
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCcc-HHHHHHHHHHHHHCCCcHHHHHH--
Q 003047 389 MGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKS-LLITYNCGLQYLACGKPVLAARC-- 465 (854)
Q Consensus 389 p~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~-~~~~~nLG~~ll~~Gk~eeAl~~-- 465 (854)
|...+..-..=|.+|..-.+|.-|-.||-+|++-+..+. .+.. ...+-.+=.|-.+.+..++--..
T Consensus 205 PqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~-----------~~v~A~~sLKYMlLcKIMln~~ddv~~lls 273 (411)
T KOG1463|consen 205 PQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLD-----------DDVKALTSLKYMLLCKIMLNLPDDVAALLS 273 (411)
T ss_pred HHHHHHHHHhccceeecccccchHHHHHHHHHccccccC-----------CcHHHHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence 443343343349999999999999999999999643221 1111 12222334444556666653322
Q ss_pred HHHHHHhcCCCHHHHHHHHHH
Q 003047 466 FQKSSLVFYKQPLLWLRLAEC 486 (854)
Q Consensus 466 y~kAL~l~P~~~~aw~~La~~ 486 (854)
=..+++......++....+++
T Consensus 274 ~K~~l~y~g~~i~AmkavAeA 294 (411)
T KOG1463|consen 274 AKLALKYAGRDIDAMKAVAEA 294 (411)
T ss_pred hHHHHhccCcchHHHHHHHHH
Confidence 234444444445555555543
No 355
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=63.24 E-value=9.4 Score=29.69 Aligned_cols=26 Identities=23% Similarity=0.416 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHhhh
Q 003047 149 KLNIAVIWFHLHEYAKALSVLEPLYQ 174 (854)
Q Consensus 149 ~~n~a~~~~~~~~y~~A~~~~e~l~~ 174 (854)
.+++|.+|...|+++.|.+++++++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 46899999999999999999999996
No 356
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=62.77 E-value=24 Score=40.37 Aligned_cols=92 Identities=22% Similarity=0.109 Sum_probs=65.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhcc-cCCccccccccCCc---cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCC
Q 003047 400 GCIYYQLAKYHTSSVFLSKALSNSASLR-KDKPLKLLTFSQDK---SLLITYNCGLQYLACGKPVLAARCFQKSSLVFYK 475 (854)
Q Consensus 400 G~iy~~~g~~~eAi~~f~kAL~~~~~l~-~~~~l~~~~~~~~~---~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~ 475 (854)
+.-++++|+|..|+--|+-||+++..-. ..++.. ....+. ...+--.+..||+.+++++-|+..-.+.+.++|.
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~--~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~ 260 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFK--ASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS 260 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCC--CChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc
Confidence 5667788999999999999999864311 001000 000000 0122346789999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhc
Q 003047 476 QPLLWLRLAECCLMALEK 493 (854)
Q Consensus 476 ~~~aw~~La~~~i~~~~~ 493 (854)
++.-|++-|-|...+.+.
T Consensus 261 ~frnHLrqAavfR~LeRy 278 (569)
T PF15015_consen 261 YFRNHLRQAAVFRRLERY 278 (569)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 999999999887755553
No 357
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.27 E-value=1.5e+02 Score=32.37 Aligned_cols=131 Identities=11% Similarity=0.115 Sum_probs=72.5
Q ss_pred HcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHhCCCCh-hHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCC
Q 003047 39 QSRKFDECLDLLKQLLDKKPDD----PKILHNIAIAEYFRDGCTDP-KKLLEALNNVKNKSEELARATGEQTEGGGNIGS 113 (854)
Q Consensus 39 ~~g~y~~Al~~l~~~l~~~~~~----~~~l~nla~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~ 113 (854)
...+.++|+..|++++++.+.- .+++-.+--++|-.+++..- ..|.+-+..|+.++. +.+.+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT---rNySE---------- 105 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT---RNYSE---------- 105 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh---ccccH----------
Confidence 3458999999999999987663 57777777666655443322 223445556666662 11111
Q ss_pred cccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcc-CCCchhhHHHHHHHHH
Q 003047 114 KVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNI-EPIDETTALQICLLLL 192 (854)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~-~~~~e~~~~~~~l~l~ 192 (854)
. .+ |+++-|- .-.++-+--.++||--+..+ ...++.+--+..+-|+
T Consensus 106 ----------------------K--sI----N~IlDyi-----StS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLg 152 (440)
T KOG1464|consen 106 ----------------------K--SI----NSILDYI-----STSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLG 152 (440)
T ss_pred ----------------------H--HH----HHHHHHH-----hhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHh
Confidence 0 01 1111110 01122222233444333322 2234444334556689
Q ss_pred HHHHHccCHHHHHHHHHHHHHhh
Q 003047 193 DVALACHDAFRSADVLIYLEKAF 215 (854)
Q Consensus 193 ~vy~~~~~~~kA~~~l~~lek~l 215 (854)
.+|+..++|.+-..|++.+.++-
T Consensus 153 kl~fd~~e~~kl~KIlkqLh~SC 175 (440)
T KOG1464|consen 153 KLYFDRGEYTKLQKILKQLHQSC 175 (440)
T ss_pred hhheeHHHHHHHHHHHHHHHHHh
Confidence 99999999999988887776553
No 358
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=60.97 E-value=15 Score=31.91 Aligned_cols=33 Identities=21% Similarity=0.085 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003047 24 LSVTATLAKEAALYFQSRKFDECLDLLKQLLDK 56 (854)
Q Consensus 24 ~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~ 56 (854)
+..+..|+.+|+..=..|+|++|+.+|.++++.
T Consensus 3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999883
No 359
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=60.43 E-value=17 Score=35.44 Aligned_cols=45 Identities=13% Similarity=0.131 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 003047 778 GTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVD 822 (854)
Q Consensus 778 a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~ 822 (854)
-.-.|-||..+...|+|+++++.++..|+..|++..+.-+.-+++
T Consensus 71 Re~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ie 115 (149)
T KOG3364|consen 71 RECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKETIE 115 (149)
T ss_pred hhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 444577999999999999999999999999999988888777774
No 360
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=60.26 E-value=96 Score=34.61 Aligned_cols=123 Identities=15% Similarity=0.116 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhcCCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHhhhc----cCCCccHHHHHHHHHHHHHcCC
Q 003047 339 HAKREVKLAMNIARGKDS------SLALFLKSQLEYARRNHRKAIKLLLALSNR----TEMGISSMFNNNLGCIYYQLAK 408 (854)
Q Consensus 339 ~A~~elk~al~~~~~P~~------~~a~~lla~ly~~~g~~~kAl~~l~kal~~----~dp~~~a~~~nnLG~iy~~~g~ 408 (854)
+-++++.+.++-. .+| .+++..+|..|.+.|+.+.|++.+.+...+ ..--+.......||.+|....=
T Consensus 82 eki~eld~~ieda--eenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~l 159 (393)
T KOG0687|consen 82 EKIKELDEKIEDA--EENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDL 159 (393)
T ss_pred HHHHHHHHHHHHH--HHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHH
Confidence 3445555555544 333 578899999999999999999999998773 1111234445567888876544
Q ss_pred HHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC
Q 003047 409 YHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQ 476 (854)
Q Consensus 409 ~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~ 476 (854)
..+-++--+..++. +.... --.+..+|. |.-.+...++.+|-..|-.++.-+...
T Consensus 160 V~~~iekak~liE~----GgDWe-------RrNRlKvY~--Gly~msvR~Fk~Aa~Lfld~vsTFtS~ 214 (393)
T KOG0687|consen 160 VTESIEKAKSLIEE----GGDWE-------RRNRLKVYQ--GLYCMSVRNFKEAADLFLDSVSTFTSY 214 (393)
T ss_pred HHHHHHHHHHHHHh----CCChh-------hhhhHHHHH--HHHHHHHHhHHHHHHHHHHHcccccce
Confidence 44444333333332 10000 001345555 777888899999999999888776554
No 361
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.51 E-value=3.7e+02 Score=34.61 Aligned_cols=122 Identities=10% Similarity=0.049 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh---------
Q 003047 355 DSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSAS--------- 425 (854)
Q Consensus 355 ~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~--------- 425 (854)
+.+..|..+|....+.|...+|++.|-++ .|| ..|...-.+-.+.|+|++-+.|+..|-+-.+.
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika---dDp----s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~ 1174 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA---DDP----SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIF 1174 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc---CCc----HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHH
Confidence 34567777777778888888888877665 345 23445556667778888888777776664211
Q ss_pred -------------c--ccCCc-cc---cccc--cC-------CccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCH
Q 003047 426 -------------L--RKDKP-LK---LLTF--SQ-------DKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQP 477 (854)
Q Consensus 426 -------------l--~~~~~-l~---~~~~--~~-------~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~ 477 (854)
+ ..+.. +. ...+ .. .....-|-.|+..+..+|+|..|.++-++| ++.
T Consensus 1175 AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA-----ns~ 1249 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA-----NST 1249 (1666)
T ss_pred HHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc-----cch
Confidence 0 00000 00 0000 00 001122445677888888888888887775 667
Q ss_pred HHHHHHHHHHH
Q 003047 478 LLWLRLAECCL 488 (854)
Q Consensus 478 ~aw~~La~~~i 488 (854)
+.|-....+|+
T Consensus 1250 ktWK~VcfaCv 1260 (1666)
T KOG0985|consen 1250 KTWKEVCFACV 1260 (1666)
T ss_pred hHHHHHHHHHh
Confidence 78988888888
No 362
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.11 E-value=31 Score=41.37 Aligned_cols=77 Identities=22% Similarity=0.191 Sum_probs=60.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCH
Q 003047 398 NLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQP 477 (854)
Q Consensus 398 nLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~ 477 (854)
|-+.-++++.+|..++++|.+.|...+.=.. ....+...-++..||+.+.+.+.|.+++++|-+.+|.++
T Consensus 359 n~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~----------~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~ 428 (872)
T KOG4814|consen 359 NTAKKLFKMEKYVVSIRFYKLSLKDIISDNY----------SDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSP 428 (872)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhccchhh----------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccH
Confidence 3577888999999999999999997331000 122356677999999999999999999999999999998
Q ss_pred HHHHHHH
Q 003047 478 LLWLRLA 484 (854)
Q Consensus 478 ~aw~~La 484 (854)
..-..+-
T Consensus 429 l~q~~~~ 435 (872)
T KOG4814|consen 429 LCQLLML 435 (872)
T ss_pred HHHHHHH
Confidence 7654443
No 363
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=58.23 E-value=19 Score=31.08 Aligned_cols=33 Identities=24% Similarity=0.300 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003047 24 LSVTATLAKEAALYFQSRKFDECLDLLKQLLDK 56 (854)
Q Consensus 24 ~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~ 56 (854)
+..+..|+.+|+..=..|+|++|+.+|.++++.
T Consensus 3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999873
No 364
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=58.15 E-value=2.6e+02 Score=29.80 Aligned_cols=136 Identities=13% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHH-HhcCHHHHHHHHHHhhhcc--------------
Q 003047 324 QLYKVRFLLLTRNLKHAKREVKLAMNIARGKDS-SLALFLKSQLEY-ARRNHRKAIKLLLALSNRT-------------- 387 (854)
Q Consensus 324 ~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~-~~a~~lla~ly~-~~g~~~kAl~~l~kal~~~-------------- 387 (854)
.+|.++++-+.+++++..+.+++++..+ |+- .+-..+++..|- ..|....++..+..... .
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~--~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~-~~~~~~~~~~~~~i~ 80 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMN--PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ-KEENKGNEKQVKLIK 80 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTS--S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTTTHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccC--CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh-hhcccchhHHHHHHH
Q ss_pred ------------------------------CCCccHHHHHHHHHHHH---HcCCH-------HHHHHHHHHHHHhchh-c
Q 003047 388 ------------------------------EMGISSMFNNNLGCIYY---QLAKY-------HTSSVFLSKALSNSAS-L 426 (854)
Q Consensus 388 ------------------------------dp~~~a~~~nnLG~iy~---~~g~~-------~eAi~~f~kAL~~~~~-l 426 (854)
++.....++-..|.+|. .-..- +.|...|++|+.+... +
T Consensus 81 ~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L 160 (236)
T PF00244_consen 81 DYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKEL 160 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhccc
Q ss_pred ccCCccccccccCCccHHHHHHHHHHHHH-CCCcHHHHHHHHHHHH
Q 003047 427 RKDKPLKLLTFSQDKSLLITYNCGLQYLA-CGKPVLAARCFQKSSL 471 (854)
Q Consensus 427 ~~~~~l~~~~~~~~~~~~~~~nLG~~ll~-~Gk~eeAl~~y~kAL~ 471 (854)
...+|+ +..+..|.++.|+. +|+.++|++.-++++.
T Consensus 161 ~~~~p~---------rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 161 PPTHPL---------RLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp CTTSHH---------HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred CCCCcH---------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
No 365
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=58.14 E-value=18 Score=31.64 Aligned_cols=32 Identities=22% Similarity=0.181 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003047 24 LSVTATLAKEAALYFQSRKFDECLDLLKQLLD 55 (854)
Q Consensus 24 ~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~ 55 (854)
-..+..++.+|+..=..|+|++|+.+|.++++
T Consensus 3 ~~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 3 ELAAKEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 35678999999999999999999999999987
No 366
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=57.57 E-value=16 Score=27.51 Aligned_cols=31 Identities=13% Similarity=-0.130 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHhcC
Q 003047 444 LITYNCGLQYLACGKPVLAARCFQKSSLVFY 474 (854)
Q Consensus 444 ~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P 474 (854)
+++..||.+-+..++|+.|+.-|+++|.+.-
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~ 32 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQE 32 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 4677899999999999999999999998753
No 367
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=55.92 E-value=20 Score=31.29 Aligned_cols=32 Identities=16% Similarity=0.100 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003047 25 SVTATLAKEAALYFQSRKFDECLDLLKQLLDK 56 (854)
Q Consensus 25 ~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~ 56 (854)
..+..++.+|++.=..|+|++|+.+|+++++.
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999873
No 368
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=55.78 E-value=2.9e+02 Score=31.59 Aligned_cols=61 Identities=13% Similarity=0.103 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHHhcCHHHHHHHHHHhhh
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSL----ALFLKSQLEYARRNHRKAIKLLLALSN 385 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~----a~~lla~ly~~~g~~~kAl~~l~kal~ 385 (854)
....+++-....+++..|.+.+..++..- |.+.. ..+..|..+...-+|++|.+++++.+.
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl--~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRL--PGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44556777778999999999999999863 44443 224456677799999999999999887
No 369
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=54.33 E-value=1.7e+02 Score=32.73 Aligned_cols=58 Identities=19% Similarity=0.193 Sum_probs=41.1
Q ss_pred HHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 003047 152 IAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLE 212 (854)
Q Consensus 152 ~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~le 212 (854)
+|-+-.++|+..+|++.++.+.+.++ +-- ...+.-+|++..++.+-|...-.+|.+|.
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~p-l~t--~lniheNLiEalLE~QAYADvqavLakYD 338 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEFP-LLT--MLNIHENLLEALLELQAYADVQAVLAKYD 338 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhcc-HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 48888999999999999999998554 221 33455567777777777766665555554
No 370
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=53.97 E-value=3.4e+02 Score=29.96 Aligned_cols=163 Identities=13% Similarity=0.154 Sum_probs=90.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC-C-------HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhc
Q 003047 31 AKEAALYFQSRKFDECLDLLKQLLDKKPD-D-------PKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATG 102 (854)
Q Consensus 31 ~~~a~~~~~~g~y~~Al~~l~~~l~~~~~-~-------~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 102 (854)
+..|-......++++|+..|.++|...-. | -.+.-+|+-.|.-.+.+.+..+ .+...+..+++++....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~---~i~~sre~m~~ftk~k~ 83 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGD---TITSSREAMEDFTKPKI 83 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHH---HHHhhHHHHHHhcchhH
Confidence 45566666889999999999999986111 1 2445678877777777655555 44444444433211100
Q ss_pred ccCCCCCCCCCcccCCCCCCCcccccccccccCCcccc-------cchhhHHH-----HHHHHHHHHHhhcHHHHHHHHH
Q 003047 103 EQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYM-------DEFDVSVA-----KLNIAVIWFHLHEYAKALSVLE 170 (854)
Q Consensus 103 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-----~~n~a~~~~~~~~y~~A~~~~e 170 (854)
-..- -.+=+.-++ +.++..-++.+ -+.++-.. -..+.-+++..|+|.+|+...-
T Consensus 84 ~Kii--------rtLiekf~~------~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn 149 (421)
T COG5159 84 TKII--------RTLIEKFPY------SSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALIN 149 (421)
T ss_pred HHHH--------HHHHHhcCC------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 0000 000000000 00000000000 00111111 1124677999999999999999
Q ss_pred HhhhccCCCchhh-HHHHHHHHHHHHHHccCHHHHHHHHHH
Q 003047 171 PLYQNIEPIDETT-ALQICLLLLDVALACHDAFRSADVLIY 210 (854)
Q Consensus 171 ~l~~~~~~~~e~~-~~~~~l~l~~vy~~~~~~~kA~~~l~~ 210 (854)
.++..+...||.. -+.++++=..||...++..|+-.-|.-
T Consensus 150 ~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTa 190 (421)
T COG5159 150 PLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTA 190 (421)
T ss_pred HHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHH
Confidence 9999898898885 444555556888888888877654433
No 371
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=53.96 E-value=83 Score=33.61 Aligned_cols=68 Identities=12% Similarity=-0.034 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Q 003047 393 SMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSS 470 (854)
Q Consensus 393 a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL 470 (854)
..+...||..|+..|++++|+.+|+.+....++- +- ......++-.+-.|+..+|+.++.+.+.-+.+
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e--gW--------~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE--GW--------WSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--Cc--------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 4455568999999999999999999996653210 00 01124566788899999999988887655543
No 372
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=53.38 E-value=28 Score=29.34 Aligned_cols=31 Identities=23% Similarity=0.362 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003047 25 SVTATLAKEAALYFQSRKFDECLDLLKQLLD 55 (854)
Q Consensus 25 ~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~ 55 (854)
..+..++.+|+..=+.|+|++|+++|.++++
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4678899999999999999999999999987
No 373
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.16 E-value=63 Score=37.26 Aligned_cols=121 Identities=19% Similarity=0.126 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---------CHHHHHHHHH--HHHHHhCCCChhHHHHHHHHHHHHH
Q 003047 26 VTATLAKEAALYFQSRKFDECLDLLKQLLDKKPD---------DPKILHNIAI--AEYFRDGCTDPKKLLEALNNVKNKS 94 (854)
Q Consensus 26 ~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~---------~~~~l~nla~--~~~~~~~~~~~~~~~~~l~~~~~~~ 94 (854)
-+-.+..+|-..+....|++|+.++-.+=+.... |-=++.||-+ |||-..+.++..+...-|...++-+
T Consensus 162 mglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf 241 (568)
T KOG2561|consen 162 MGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGF 241 (568)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhh
Confidence 3445667888889999999999888766553222 2223444444 4555566666555444444444444
Q ss_pred HHHHhhhcccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHH---HHHHHHHHHHhhcHHHHHHHHHH
Q 003047 95 EELARATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVA---KLNIAVIWFHLHEYAKALSVLEP 171 (854)
Q Consensus 95 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~n~a~~~~~~~~y~~A~~~~e~ 171 (854)
+ +.+.++-. .-.++.....|+.+.. +.-+|++.||+|+-++|.++++.
T Consensus 242 ~---~syGenl~--------------------------Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~ 292 (568)
T KOG2561|consen 242 E---RSYGENLS--------------------------RLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALES 292 (568)
T ss_pred h---hhhhhhhH--------------------------hhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 2 21221100 0011122223555432 33359999999999999999997
Q ss_pred hhhc
Q 003047 172 LYQN 175 (854)
Q Consensus 172 l~~~ 175 (854)
..+.
T Consensus 293 a~~~ 296 (568)
T KOG2561|consen 293 AHAK 296 (568)
T ss_pred HHHH
Confidence 6653
No 374
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=52.54 E-value=1.8e+02 Score=30.94 Aligned_cols=140 Identities=10% Similarity=-0.010 Sum_probs=78.9
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003047 340 AKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKA 419 (854)
Q Consensus 340 A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kA 419 (854)
|.+.|..++.+. |++-..+..+|.++...|+.=.|+=+|-+++--..| .+.+..||..++.+..+. +....
T Consensus 1 A~~~Y~~A~~l~--P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~P--f~~A~~NL~~lf~~~~~~-----~~~~~ 71 (278)
T PF10373_consen 1 AERYYRKAIRLL--PSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIP--FPSARENLQKLFEKAQSH-----LSNKK 71 (278)
T ss_dssp HHHHHHHHHHH---TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB----HHHHHHHHHHHHH--------------
T ss_pred CHHHHHHHHHhC--CCCCCcccchhhhhccccchHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHhccc-----chhcc
Confidence 567788999999 999999999999999999999999999999874456 467889999888872111 00110
Q ss_pred HHhchhcccCCccccccccCCccH--HHHHHHHHHHHHCCC------cHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHH
Q 003047 420 LSNSASLRKDKPLKLLTFSQDKSL--LITYNCGLQYLACGK------PVLAARCFQKSSLV--FYKQPLLWLRLAECCLM 489 (854)
Q Consensus 420 L~~~~~l~~~~~l~~~~~~~~~~~--~~~~nLG~~ll~~Gk------~eeAl~~y~kAL~l--~P~~~~aw~~La~~~i~ 489 (854)
............ ........ ....-.|..+...+. ..+.++.++..+.. .+.+....+++.-+++.
T Consensus 72 ~~~~~~~~~~~~----~~~~~~~~~~~Fl~l~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ll~~~~i~i~ 147 (278)
T PF10373_consen 72 SSESNNKSSSKS----RSELEERFISYFLRLHGILFTKIDLESFSELCNEFLSDLENLLSESPRSLNSDQLLKMVIINIF 147 (278)
T ss_dssp HTTS------------SS--HHHHHHHHHHHHHHHHHT--GGGHHHHHHHHHHHHHHHHHT--T-S-HHHHHHHHHHHHH
T ss_pred chhhcccccccc----ccchHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Confidence 000000000000 00000011 112223444444321 22345667777777 77778888888888775
Q ss_pred HHh
Q 003047 490 ALE 492 (854)
Q Consensus 490 ~~~ 492 (854)
...
T Consensus 148 ~~~ 150 (278)
T PF10373_consen 148 AVH 150 (278)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 375
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=52.36 E-value=23 Score=30.77 Aligned_cols=33 Identities=15% Similarity=0.204 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003047 24 LSVTATLAKEAALYFQSRKFDECLDLLKQLLDK 56 (854)
Q Consensus 24 ~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~ 56 (854)
+.++..++.+|++.=..|+|++|+.+|.++++.
T Consensus 3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999883
No 376
>PF12854 PPR_1: PPR repeat
Probab=51.83 E-value=31 Score=24.92 Aligned_cols=26 Identities=12% Similarity=0.069 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003047 393 SMFNNNLGCIYYQLAKYHTSSVFLSK 418 (854)
Q Consensus 393 a~~~nnLG~iy~~~g~~~eAi~~f~k 418 (854)
...|+.|-..|.+.|+.++|++.|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 56888899999999999999998875
No 377
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.75 E-value=3.6e+02 Score=29.53 Aligned_cols=206 Identities=13% Similarity=0.127 Sum_probs=106.9
Q ss_pred hcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhcc
Q 003047 160 HEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKY 239 (854)
Q Consensus 160 ~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~ 239 (854)
...++|++-|++++. +++-...-+-+++--++.+++.+++|++..+ +|.+.+..-+.. + |. .|
T Consensus 41 ~~p~~Al~sF~kVle-lEgEKgeWGFKALKQmiKI~f~l~~~~eMm~---~Y~qlLTYIkSA-V--------Tr----Ny 103 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLE-LEGEKGEWGFKALKQMIKINFRLGNYKEMME---RYKQLLTYIKSA-V--------TR----NY 103 (440)
T ss_pred cCHHHHHHHHHHHHh-cccccchhHHHHHHHHHHHHhccccHHHHHH---HHHHHHHHHHHH-H--------hc----cc
Confidence 478999999999999 4443333455666678899999999999874 444444321000 0 00 00
Q ss_pred CCCCCCCcccccccchhhhhhhhhhhhhh-hhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhH
Q 003047 240 SSVPSNSSTADASNSDLAATVNASENALS-RTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVD 318 (854)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 318 (854)
| |- .+|+-..-++ +.--+=.-+||..+. ..+. ...+ .|--=.+-..||..|.++ ++
T Consensus 104 S--------------EK--sIN~IlDyiStS~~m~LLQ~FYeTTL-~ALk-dAKN-eRLWFKTNtKLgkl~fd~----~e 160 (440)
T KOG1464|consen 104 S--------------EK--SINSILDYISTSKNMDLLQEFYETTL-DALK-DAKN-ERLWFKTNTKLGKLYFDR----GE 160 (440)
T ss_pred c--------------HH--HHHHHHHHHhhhhhhHHHHHHHHHHH-HHHH-hhhc-ceeeeeccchHhhhheeH----HH
Confidence 0 00 0010011111 000011113333320 0111 0000 010013445677777666 55
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCC-------HHHHHHHHHHHHHhcCHHHHHHHHHHhhhc--cCC
Q 003047 319 LKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDS-------SLALFLKSQLEYARRNHRKAIKLLLALSNR--TEM 389 (854)
Q Consensus 319 ~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~-------~~a~~lla~ly~~~g~~~kAl~~l~kal~~--~dp 389 (854)
|... .+.++++...+...+|.++ .+.+-+--+.|..+.+.++--.+|++++.. .-|
T Consensus 161 ~~kl---------------~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIP 225 (440)
T KOG1464|consen 161 YTKL---------------QKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIP 225 (440)
T ss_pred HHHH---------------HHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCC
Confidence 5442 2333444444444433222 344455567788888888888889998873 223
Q ss_pred CccHHHHHHH----HHHHHHcCCHHHHHHHHHHHHHh
Q 003047 390 GISSMFNNNL----GCIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 390 ~~~a~~~nnL----G~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
+ +.+.--+ |..|.+-|++++|..-|-.|++.
T Consensus 226 H--PlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 226 H--PLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred c--hHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 1 2111111 55678889999999999999886
No 378
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.62 E-value=6.6e+02 Score=32.58 Aligned_cols=63 Identities=10% Similarity=0.121 Sum_probs=41.3
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hC-CC------CHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 003047 775 EARGTLYVNIAAMFAMQGEFERAHHFVTQALS-IL-PR------STEATLTAIYVDLMLGKSQEALAKLKYC 838 (854)
Q Consensus 775 ~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~-~~-P~------~~~a~~l~~y~~L~~G~~~eA~~~lk~~ 838 (854)
+|.-.++..||..|.+- ++++..++++--.+ ++ |. ..+.+.-++|++-+-..++.|.-.+-.+
T Consensus 1310 RAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~tmm~h 1380 (1666)
T KOG0985|consen 1310 RAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAALTMMEH 1380 (1666)
T ss_pred HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhC
Confidence 34566777888877654 46666666665322 22 32 2566778888888888888887666544
No 379
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=51.48 E-value=2e+02 Score=31.68 Aligned_cols=129 Identities=12% Similarity=0.024 Sum_probs=82.0
Q ss_pred cCHHHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-cCCC---ccHHHHHHHHHHHHH
Q 003047 335 RNLKHAKREVKLAMNIARGKDS-----SLALFLKSQLEYARRNHRKAIKLLLALSNR-TEMG---ISSMFNNNLGCIYYQ 405 (854)
Q Consensus 335 ~~~~~A~~elk~al~~~~~P~~-----~~a~~lla~ly~~~g~~~kAl~~l~kal~~-~dp~---~~a~~~nnLG~iy~~ 405 (854)
+.-++-++|+.+.+...+ .+| .+++.++|..|.+.++.+.+.+.+.+.+.+ .-.. +.-..-..||.+|..
T Consensus 89 kkneeki~Elde~i~~~e-edngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d 167 (412)
T COG5187 89 KKNEEKIEELDERIREKE-EDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGD 167 (412)
T ss_pred HhhHHHHHHHHHHHHHHh-hcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhcc
Confidence 444556667744443331 333 678899999999999999999999998873 0011 122233457888877
Q ss_pred cCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCH
Q 003047 406 LAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQP 477 (854)
Q Consensus 406 ~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~ 477 (854)
+.=..+-++..+-.++- +.... --.+..+|+ |...+...++.+|-..|-..+.-+....
T Consensus 168 ~~vV~e~lE~~~~~iEk----GgDWe-------RrNRyK~Y~--Gi~~m~~RnFkeAa~Ll~d~l~tF~S~E 226 (412)
T COG5187 168 RKVVEESLEVADDIIEK----GGDWE-------RRNRYKVYK--GIFKMMRRNFKEAAILLSDILPTFESSE 226 (412)
T ss_pred HHHHHHHHHHHHHHHHh----CCCHH-------hhhhHHHHH--HHHHHHHHhhHHHHHHHHHHhccccccc
Confidence 65555555544444442 10000 012355666 8889999999999999988887776553
No 380
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=51.00 E-value=3.5e+02 Score=29.14 Aligned_cols=26 Identities=4% Similarity=0.063 Sum_probs=23.7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHh
Q 003047 325 LYKVRFLLLTRNLKHAKREVKLAMNI 350 (854)
Q Consensus 325 l~K~~lyl~~~~~~~A~~elk~al~~ 350 (854)
+|.+++.-+.+++++.....+++++.
T Consensus 5 v~~Aklaeq~eRyddm~~~mk~~~~~ 30 (244)
T smart00101 5 VYMAKLAEQAERYEEMVEFMEKVAKT 30 (244)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 56789999999999999999999987
No 381
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=50.69 E-value=49 Score=36.35 Aligned_cols=62 Identities=13% Similarity=-0.028 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003047 359 ALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 359 a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
.++..+..|...|.+.+|+.+.++++. .+| .....+-.+-.++..+|+-..|++.|++--..
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~lt-ldp-L~e~~nk~lm~~la~~gD~is~~khyerya~v 342 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALT-LDP-LSEQDNKGLMASLATLGDEISAIKHYERYAEV 342 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhh-cCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 345678889999999999999999999 788 56677777888999999999999999886554
No 382
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=49.28 E-value=40 Score=22.79 Aligned_cols=30 Identities=33% Similarity=0.444 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 003047 792 GEFERAHHFVTQALSILPRSTEATLTAIYV 821 (854)
Q Consensus 792 g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~ 821 (854)
|+.++|...|++++...|.++.++...+-.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 578999999999999999887766655443
No 383
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=48.25 E-value=60 Score=31.87 Aligned_cols=46 Identities=17% Similarity=0.164 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003047 27 TATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEY 72 (854)
Q Consensus 27 ~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~ 72 (854)
.+.++..|...+.+|+|.-|.++++.++.-+|+|.++..-++.++-
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~ 115 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALE 115 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 3677889999999999999999999999999999988776665533
No 384
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=47.55 E-value=76 Score=33.90 Aligned_cols=60 Identities=25% Similarity=0.268 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCch-hhHHHHHHHHHHHHHHccCHHHHHHH
Q 003047 148 AKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDE-TTALQICLLLLDVALACHDAFRSADV 207 (854)
Q Consensus 148 ~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e-~~~~~~~l~l~~vy~~~~~~~kA~~~ 207 (854)
....+|.-|+..|+|++|+++|+++....+.-.= .+...++..+...+...|+.+..+.+
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3345688899999999999999999765442211 13445666778999999999988754
No 385
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.83 E-value=7.4e+02 Score=31.72 Aligned_cols=58 Identities=26% Similarity=0.424 Sum_probs=39.9
Q ss_pred CcchhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHH-HHHHHHh
Q 003047 18 EDDSGVLSVTATLAKEAALYFQSRKFDECLDLLKQLLDKKP-DDPKILHNIA-IAEYFRD 75 (854)
Q Consensus 18 ~~~~~~~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~-~~~~~l~nla-~~~~~~~ 75 (854)
|+---++-+...+..-...|..+|++++|+++|.++-+... .|......+= +++|.+.
T Consensus 495 ee~e~~L~k~~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~ 554 (877)
T KOG2063|consen 495 EEIETVLKKSKKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKK 554 (877)
T ss_pred HHHHHHHHhcccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHH
Confidence 34445666777788888999999999999999999998653 4433322222 4455443
No 386
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=46.81 E-value=75 Score=34.56 Aligned_cols=70 Identities=13% Similarity=0.052 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc
Q 003047 394 MFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVF 473 (854)
Q Consensus 394 ~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~ 473 (854)
....++=.+|...++++.|..+-++.|... |.++.-+--.|.+|.++|-+.-|++.+...++..
T Consensus 182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~----------------P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~ 245 (269)
T COG2912 182 RLLRNLKAALLRELQWELALRVAERLLDLN----------------PEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC 245 (269)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhhC----------------CCChhhccCcHHHHHhcCCchhhHHHHHHHHHhC
Confidence 345566778888999999999999999982 3445556678999999999999999999999999
Q ss_pred CCCHHH
Q 003047 474 YKQPLL 479 (854)
Q Consensus 474 P~~~~a 479 (854)
|+.+.+
T Consensus 246 P~~~~a 251 (269)
T COG2912 246 PDDPIA 251 (269)
T ss_pred CCchHH
Confidence 999875
No 387
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=46.46 E-value=39 Score=29.05 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003047 23 VLSVTATLAKEAALYFQSRKFDECLDLLKQLLD 55 (854)
Q Consensus 23 ~~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~ 55 (854)
....+..++.+|+.+=..|+|++|+.+|.++++
T Consensus 4 ~~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 4 YLSKAKELISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456788899999999999999999999999987
No 388
>PF12854 PPR_1: PPR repeat
Probab=45.98 E-value=40 Score=24.30 Aligned_cols=27 Identities=11% Similarity=0.250 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003047 777 RGTLYVNIAAMFAMQGEFERAHHFVTQ 803 (854)
Q Consensus 777 ~a~~~~NLa~~~~~~g~~e~A~~~~~~ 803 (854)
+...|.-|=..||..|++++|.+.+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 477788889999999999999998875
No 389
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=45.47 E-value=6.2e+02 Score=30.46 Aligned_cols=136 Identities=13% Similarity=0.103 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcC---HHHHHHHHHHhhhc--cCCCccHHHHHHHHHHHHHcCCHHH
Q 003047 337 LKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRN---HRKAIKLLLALSNR--TEMGISSMFNNNLGCIYYQLAKYHT 411 (854)
Q Consensus 337 ~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~---~~kAl~~l~kal~~--~dp~~~a~~~nnLG~iy~~~g~~~e 411 (854)
.++|...++++++.-. -.+...++.++...-..-+ +++--.+|++++.. .+| ..+|.++-..-.+..-...
T Consensus 309 t~e~~~~yEr~I~~l~-~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~---tLv~~~~mn~irR~eGlka 384 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLL-KENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL---TLVYCQYMNFIRRAEGLKA 384 (656)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC---ceehhHHHHHHHHhhhHHH
Confidence 5566666766665541 1222333344443332222 56666777777763 334 3445444444444444566
Q ss_pred HHHHHHHHHHhchhcccCCccccccccCCccHHHH-HHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 003047 412 SSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLIT-YNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMA 490 (854)
Q Consensus 412 Ai~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~-~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~ 490 (854)
|-..|.||=+.- -....++ ++.-.-|.-.++++-|+..|+--|..+++.|..-+.-...++.+
T Consensus 385 aR~iF~kaR~~~----------------r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~l 448 (656)
T KOG1914|consen 385 ARKIFKKAREDK----------------RTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHL 448 (656)
T ss_pred HHHHHHHHhhcc----------------CCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Confidence 666666665531 0112222 23334466778899999999999999999999776666666644
Q ss_pred Hh
Q 003047 491 LE 492 (854)
Q Consensus 491 ~~ 492 (854)
+.
T Consensus 449 Nd 450 (656)
T KOG1914|consen 449 ND 450 (656)
T ss_pred Cc
Confidence 44
No 390
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=43.33 E-value=1.8e+02 Score=35.05 Aligned_cols=94 Identities=11% Similarity=0.003 Sum_probs=72.5
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH-hhhccCCCccHHHHHHH------H
Q 003047 328 VRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLA-LSNRTEMGISSMFNNNL------G 400 (854)
Q Consensus 328 ~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~k-al~~~dp~~~a~~~nnL------G 400 (854)
.-.+...+..+.+.-.+..++..+ |++..+..++|.....-|..-.++..+.. +.. ..|. +..+...+ |
T Consensus 74 si~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~-~~~~-~~~~~~~~~~~~~~~ 149 (620)
T COG3914 74 SILLAPLADSTLAFLAKRIPLSVN--PENCPAVQNLAAALELDGLQFLALADISEIAEW-LSPD-NAEFLGHLIRFYQLG 149 (620)
T ss_pred HhhccccccchhHHHHHhhhHhcC--cccchHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCcc-hHHHHhhHHHHHHHH
Confidence 444555667778889999999999 99999999999988888877777776666 444 4553 34444444 8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhchh
Q 003047 401 CIYYQLAKYHTSSVFLSKALSNSAS 425 (854)
Q Consensus 401 ~iy~~~g~~~eAi~~f~kAL~~~~~ 425 (854)
.+...+|+..++..+..++....+.
T Consensus 150 ~~~~~l~~~~~~~~~l~~~~d~~p~ 174 (620)
T COG3914 150 RYLKLLGRTAEAELALERAVDLLPK 174 (620)
T ss_pred HHHHHhccHHHHHHHHHHHHHhhhh
Confidence 8888999999999999999887543
No 391
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=43.01 E-value=93 Score=35.83 Aligned_cols=56 Identities=13% Similarity=0.081 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003047 778 GTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALA 833 (854)
Q Consensus 778 a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~ 833 (854)
...--.|..+|.++++.+-|+...++.+.++|.++.-++-.+-|.-.+.++.+|-+
T Consensus 228 SfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAar 283 (569)
T PF15015_consen 228 SFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAAR 283 (569)
T ss_pred HHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 44456799999999999999999999999999987777777777667777777643
No 392
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=42.95 E-value=2e+02 Score=29.68 Aligned_cols=83 Identities=12% Similarity=0.118 Sum_probs=59.6
Q ss_pred HhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-----HhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHc-
Q 003047 333 LTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEY-----ARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQL- 406 (854)
Q Consensus 333 ~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~-----~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~- 406 (854)
.++++++|.+-++.-.+.+ ..+..-+-.|..++ ..++.++|++.+..+-.... +.+-.++|.++..-
T Consensus 47 i~knF~~A~kv~K~nCden---~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~----~~aC~~~gLl~~~g~ 119 (248)
T KOG4014|consen 47 IQKNFQAAVKVFKKNCDEN---SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDANI----PQACRYLGLLHWNGE 119 (248)
T ss_pred HHHHHHHHHHHHHhccccc---CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccCC----HHHHhhhhhhhccCc
Confidence 3678888888888877776 34455566666555 45789999999999877322 34556689888743
Q ss_pred ----CC--HHHHHHHHHHHHHh
Q 003047 407 ----AK--YHTSSVFLSKALSN 422 (854)
Q Consensus 407 ----g~--~~eAi~~f~kAL~~ 422 (854)
++ ..+|..|+.+|-.+
T Consensus 120 ~~r~~dpd~~Ka~~y~traCdl 141 (248)
T KOG4014|consen 120 KDRKADPDSEKAERYMTRACDL 141 (248)
T ss_pred CCccCCCCcHHHHHHHHHhccC
Confidence 23 67899999998776
No 393
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=42.81 E-value=78 Score=34.84 Aligned_cols=62 Identities=16% Similarity=-0.087 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Q 003047 322 KLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSN 385 (854)
Q Consensus 322 ~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~ 385 (854)
.+-...++.|+..|.+.+|+.-.++++.++ |-+...+..+-+++...|+--.|++.|++.-+
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltld--pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLD--PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcC--hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 345567899999999999999999999999 99999999999999999998888888887554
No 394
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=42.57 E-value=2.1e+02 Score=30.50 Aligned_cols=60 Identities=13% Similarity=0.112 Sum_probs=48.2
Q ss_pred HHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHH
Q 003047 702 EALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLY 781 (854)
Q Consensus 702 eAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~ 781 (854)
+.|+..++..||+...+.-++ .+ |. ++..+
T Consensus 9 seLL~~~sL~dai~~a~~qVk-ak---------------------------------------Pt----------da~~R 38 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVK-AK---------------------------------------PT----------DAGGR 38 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHh-cC---------------------------------------Cc----------cccch
Confidence 467888999999999988884 11 21 34455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003047 782 VNIAAMFAMQGEFERAHHFVTQALSILPRS 811 (854)
Q Consensus 782 ~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~ 811 (854)
.-|=..+|..|+|++|...++-+-.+.|.+
T Consensus 39 hflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 39 HFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred hHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 667788999999999999999999999987
No 395
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=42.25 E-value=33 Score=37.85 Aligned_cols=76 Identities=9% Similarity=0.182 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHH-HHHHHHHCCCcHHHHHHHHHHHH
Q 003047 393 SMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYN-CGLQYLACGKPVLAARCFQKSSL 471 (854)
Q Consensus 393 a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~n-LG~~ll~~Gk~eeAl~~y~kAL~ 471 (854)
+..|.....+-.+.|-|.+--..|.++|+. .|.+.+.|.. ...-|...++.+.+...|.++|.
T Consensus 107 ~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~k----------------hP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR 170 (435)
T COG5191 107 PKIWSQYAAYVIKKKMYGEMKNIFAECLTK----------------HPLNVDLWIYCCAFELFEIANIESSRAMFLKGLR 170 (435)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------CCCCceeeeeeccchhhhhccHHHHHHHHHhhhc
Confidence 456655555556666777777777777776 2334455543 34556777888999999999999
Q ss_pred hcCCCHHHHHHHH
Q 003047 472 VFYKQPLLWLRLA 484 (854)
Q Consensus 472 l~P~~~~aw~~La 484 (854)
++|++|.+|..--
T Consensus 171 ~N~~~p~iw~eyf 183 (435)
T COG5191 171 MNSRSPRIWIEYF 183 (435)
T ss_pred cCCCCchHHHHHH
Confidence 9999999886543
No 396
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=42.06 E-value=38 Score=36.04 Aligned_cols=37 Identities=16% Similarity=0.261 Sum_probs=31.1
Q ss_pred hhhHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHhhCCCC
Q 003047 775 EARGTLYVNIAAMFA---------MQGEFERAHHFVTQALSILPRS 811 (854)
Q Consensus 775 ~a~a~~~~NLa~~~~---------~~g~~e~A~~~~~~Al~~~P~~ 811 (854)
..++-.|--+|..+. ..+++.+|..++++|+.++|+.
T Consensus 166 ~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 166 EVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 457888888888874 3478999999999999999987
No 397
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=41.60 E-value=51 Score=28.23 Aligned_cols=32 Identities=31% Similarity=0.429 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003047 24 LSVTATLAKEAALYFQSRKFDECLDLLKQLLD 55 (854)
Q Consensus 24 ~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~ 55 (854)
...+..++.+|+..=..|+|++|+.+|.++++
T Consensus 3 ~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 3 LQQAKELIKQAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35678899999999999999999999999987
No 398
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.56 E-value=1e+02 Score=37.04 Aligned_cols=50 Identities=16% Similarity=0.044 Sum_probs=39.6
Q ss_pred HHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003047 366 LEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 366 ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
+..+.|+++.|.++..++- ...-|-.||.+..+.+++..|.++|.+|-..
T Consensus 646 lal~lgrl~iA~~la~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEAN-------SEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhhhcCcHHHHHHHHHhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 3456788888888755532 2456888999999999999999999999775
No 399
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=41.49 E-value=43 Score=29.25 Aligned_cols=22 Identities=23% Similarity=0.163 Sum_probs=15.8
Q ss_pred HHHHHHhcCHHHHHHHHHHhhh
Q 003047 364 SQLEYARRNHRKAIKLLLALSN 385 (854)
Q Consensus 364 a~ly~~~g~~~kAl~~l~kal~ 385 (854)
|.-....|+|++|+.+|..++.
T Consensus 13 A~~eD~~gny~eA~~lY~~ale 34 (75)
T cd02680 13 AFDEDEKGNAEEAIELYTEAVE 34 (75)
T ss_pred HHHhhHhhhHHHHHHHHHHHHH
Confidence 3333467888888888888876
No 400
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=41.25 E-value=3.2e+02 Score=25.88 Aligned_cols=118 Identities=14% Similarity=0.077 Sum_probs=74.7
Q ss_pred HhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHH
Q 003047 333 LTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTS 412 (854)
Q Consensus 333 ~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eA 412 (854)
..+..+..+.-++.++..+ +.++..+..+..+|... +..+.++++..- .+. .+. -..+.+..+.+-++++
T Consensus 19 ~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~-~~~~ll~~l~~~---~~~-yd~---~~~~~~c~~~~l~~~~ 88 (140)
T smart00299 19 KRNLLEELIPYLESALKLN--SENPALQTKLIELYAKY-DPQKEIERLDNK---SNH-YDI---EKVGKLCEKAKLYEEA 88 (140)
T ss_pred hCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHH-CHHHHHHHHHhc---ccc-CCH---HHHHHHHHHcCcHHHH
Confidence 3467777888888888887 77777777777777644 456666766631 111 111 1244555666777777
Q ss_pred HHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 413 SVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 413 i~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
+..|.+.=. ...+. -......++++.|++++.+ ++++..|..++..++
T Consensus 89 ~~l~~k~~~--------------------~~~Al---~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 89 VELYKKDGN--------------------FKDAI---VTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HHHHHhhcC--------------------HHHHH---HHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 777766311 11121 1112233778889888876 568889999998887
No 401
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=41.13 E-value=5.7e+02 Score=28.81 Aligned_cols=86 Identities=13% Similarity=0.104 Sum_probs=57.2
Q ss_pred HhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcc---------------------CCCc
Q 003047 333 LTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRT---------------------EMGI 391 (854)
Q Consensus 333 ~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~---------------------dp~~ 391 (854)
...+-.+-++....+++++ |+-..++++++.-.- --..+|.++++++++.. ..+.
T Consensus 196 RERnp~~RI~~A~~ALeIN--~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDt 271 (556)
T KOG3807|consen 196 RERNPPARIKAAYQALEIN--NECATAYVLLAEEEA--TTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDT 271 (556)
T ss_pred HhcCcHHHHHHHHHHHhcC--chhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhccc
Confidence 3456667777888899999 999999999875432 23456666666666510 0012
Q ss_pred cHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHh
Q 003047 392 SSMFNN--NLGCIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 392 ~a~~~n--nLG~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
+..+|. .|+.+-.++|+..+|++.|+...+.
T Consensus 272 nvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke 304 (556)
T KOG3807|consen 272 NVLVYIKRRLAMCARKLGRLREAVKIMRDLMKE 304 (556)
T ss_pred chhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 223333 4677778888888888888776664
No 402
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=40.95 E-value=43 Score=30.71 Aligned_cols=30 Identities=27% Similarity=0.213 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003047 26 VTATLAKEAALYFQSRKFDECLDLLKQLLD 55 (854)
Q Consensus 26 ~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~ 55 (854)
.+++++.+|+.....|+|++|-++++++-+
T Consensus 14 ~Ars~~~eAl~~a~~g~fe~A~~~l~ea~~ 43 (97)
T cd00215 14 NARSKALEALKAAKEGDFAEAEELLEEAND 43 (97)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 588999999999999999999999998854
No 403
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=40.46 E-value=2.5e+02 Score=29.08 Aligned_cols=112 Identities=11% Similarity=-0.008 Sum_probs=76.6
Q ss_pred CCCHHHHHHHHHHHH-HhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhchhcc
Q 003047 354 KDSSLALFLKSQLEY-ARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ-----LAKYHTSSVFLSKALSNSASLR 427 (854)
Q Consensus 354 P~~~~a~~lla~ly~-~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~-----~g~~~eAi~~f~kAL~~~~~l~ 427 (854)
...|++-.++|..+- .+.+|++|.++|.+--. ... .+..-+.+|..++. .+++..|+.+|+.+-..
T Consensus 31 EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCd-en~--y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~----- 102 (248)
T KOG4014|consen 31 EKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCD-ENS--YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA----- 102 (248)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccC--CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc-----
Confidence 455677777777655 77899999999998766 232 34455567877763 46789999999998875
Q ss_pred cCCccccccccCCccHHHHHHHHHHHHHCC-----C--cHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 428 KDKPLKLLTFSQDKSLLITYNCGLQYLACG-----K--PVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 428 ~~~~l~~~~~~~~~~~~~~~nLG~~ll~~G-----k--~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
..+.+-.++|+.+..-. + .++|.+++.++..+. +..+.+.|.-.++
T Consensus 103 -------------n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~ 155 (248)
T KOG4014|consen 103 -------------NIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYM 155 (248)
T ss_pred -------------CCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHh
Confidence 12345556777766432 2 567888888877654 4455666665555
No 404
>PF13041 PPR_2: PPR repeat family
Probab=40.06 E-value=93 Score=24.02 Aligned_cols=39 Identities=18% Similarity=0.071 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhc-cCCCccHHHHHHH
Q 003047 359 ALFLKSQLEYARRNHRKAIKLLLALSNR-TEMGISSMFNNNL 399 (854)
Q Consensus 359 a~~lla~ly~~~g~~~kAl~~l~kal~~-~dp~~~a~~~nnL 399 (854)
.+..+=..+.+.|++++|+++|++..+. ..| +...|+.|
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P--~~~Ty~~l 44 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKRGIKP--DSYTYNIL 44 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC--CHHHHHHH
Confidence 3444556677788888888888887764 345 24455544
No 405
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=39.41 E-value=62 Score=38.20 Aligned_cols=70 Identities=14% Similarity=0.031 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHhcCCCHHHHHHHH
Q 003047 408 KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLAC---GKPVLAARCFQKSSLVFYKQPLLWLRLA 484 (854)
Q Consensus 408 ~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~---Gk~eeAl~~y~kAL~l~P~~~~aw~~La 484 (854)
....|+..|.++++- .+.....+.|.+.++++. |+.-.|+.-...|+.++|....+|++|+
T Consensus 389 ~~~~~i~~~s~a~q~----------------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la 452 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQY----------------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLA 452 (758)
T ss_pred HHHHHHHHHHHHhhh----------------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHH
Confidence 456778888888776 344567777888888875 4455678888999999999999999999
Q ss_pred HHHHHHHhc
Q 003047 485 ECCLMALEK 493 (854)
Q Consensus 485 ~~~i~~~~~ 493 (854)
+|+..+++-
T Consensus 453 ~aL~el~r~ 461 (758)
T KOG1310|consen 453 RALNELTRY 461 (758)
T ss_pred HHHHHHhhH
Confidence 999977664
No 406
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=39.36 E-value=42 Score=37.65 Aligned_cols=106 Identities=12% Similarity=0.066 Sum_probs=67.2
Q ss_pred HHHHHhcCHHHHHHHHHHhhhc------cCCC-----------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcc
Q 003047 365 QLEYARRNHRKAIKLLLALSNR------TEMG-----------ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLR 427 (854)
Q Consensus 365 ~ly~~~g~~~kAl~~l~kal~~------~dp~-----------~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~ 427 (854)
+..+.+++|+.|..-|.+++.- .++. ..-..+.|++.+-.+.+.+..|+..-..++..
T Consensus 230 ~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~----- 304 (372)
T KOG0546|consen 230 NKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRD----- 304 (372)
T ss_pred hhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccccc-----
Confidence 5566666666666666666541 0000 01112233444444455555444444433332
Q ss_pred cCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 003047 428 KDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAEC 486 (854)
Q Consensus 428 ~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~ 486 (854)
......++|..|..++...++++|++.+..+....|++..+-..+...
T Consensus 305 -----------~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 305 -----------ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENV 352 (372)
T ss_pred -----------ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence 233456889999999999999999999999999999998876666543
No 407
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=38.76 E-value=48 Score=30.50 Aligned_cols=30 Identities=20% Similarity=0.048 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003047 26 VTATLAKEAALYFQSRKFDECLDLLKQLLD 55 (854)
Q Consensus 26 ~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~ 55 (854)
.+++++.+|+.....|+|++|-++++++-+
T Consensus 16 ~Ars~~~eAl~~a~~gdfe~A~~~l~eA~~ 45 (99)
T TIGR00823 16 DARSKALEALKAAKAGDFAKARALVEQAGM 45 (99)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 588999999999999999999999998754
No 408
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=38.59 E-value=48 Score=30.77 Aligned_cols=30 Identities=23% Similarity=0.137 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003047 26 VTATLAKEAALYFQSRKFDECLDLLKQLLD 55 (854)
Q Consensus 26 ~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~ 55 (854)
.+++++.+|+.....|+|++|.++++++-+
T Consensus 19 ~Ars~~~eAl~~ak~gdf~~A~~~l~eA~~ 48 (104)
T PRK09591 19 NARTEVHEAFAAMREGNFDLAEQKLNQSNE 48 (104)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 588999999999999999999999998854
No 409
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.74 E-value=1.4e+02 Score=34.43 Aligned_cols=105 Identities=18% Similarity=0.059 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhc-cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCcccccc
Q 003047 358 LALFLKSQLEYARRNHRKAIKLLLALSNR-TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLT 436 (854)
Q Consensus 358 ~a~~lla~ly~~~g~~~kAl~~l~kal~~-~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~ 436 (854)
.++-.+|..|+.-|+.+.|+++|-++-.- .........+.|+-.+-.-+|++..-..|..+|-..-... .+ ..
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~-~~-----~~ 224 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDAN-EN-----LA 224 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhh-hh-----HH
Confidence 45677899999999999999999995441 1122345566667777778899999999999988751000 00 00
Q ss_pred ccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Q 003047 437 FSQDKSLLITYNCGLQYLACGKPVLAARCFQKSS 470 (854)
Q Consensus 437 ~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL 470 (854)
...+....+ -.|.+.+.+++|..|..+|..+.
T Consensus 225 q~v~~kl~C--~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 225 QEVPAKLKC--AAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HhcCcchHH--HHHHHHHHHHHHHHHHHHHHhCC
Confidence 001223334 44888999999999999887654
No 410
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.72 E-value=2.3e+02 Score=31.62 Aligned_cols=103 Identities=14% Similarity=0.123 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhhcc-----CCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCcccc
Q 003047 360 LFLKSQLEYARRNHRKAIKLLLALSNRT-----EMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKL 434 (854)
Q Consensus 360 ~~lla~ly~~~g~~~kAl~~l~kal~~~-----dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~ 434 (854)
.+.+|.+|-..+++++|...+..+.... +-......+..+|..|...++..+|..+..++=-..... .++.+
T Consensus 106 rl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~-~Ne~L-- 182 (399)
T KOG1497|consen 106 RLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAES-SNEQL-- 182 (399)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcc-cCHHH--
Confidence 4678899999999999988887665421 111223456678999999999999999999874431111 11000
Q ss_pred ccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh
Q 003047 435 LTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLV 472 (854)
Q Consensus 435 ~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l 472 (854)
.-...+.| +.++-..+++-||-.+|.+....
T Consensus 183 -----qie~kvc~--ARvlD~krkFlEAAqrYyels~~ 213 (399)
T KOG1497|consen 183 -----QIEYKVCY--ARVLDYKRKFLEAAQRYYELSQR 213 (399)
T ss_pred -----HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 00122333 66777788888888887766543
No 411
>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional
Probab=37.64 E-value=53 Score=31.11 Aligned_cols=30 Identities=17% Similarity=0.079 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003047 26 VTATLAKEAALYFQSRKFDECLDLLKQLLD 55 (854)
Q Consensus 26 ~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~ 55 (854)
.+++++.+|+.....|+|++|.++++++-+
T Consensus 30 ~ArS~~~eAl~~Ak~gdfe~A~~~l~eA~e 59 (115)
T PRK10454 30 QARSLAYAALKQAKQGDFAAAKAMMDQSRM 59 (115)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 589999999999999999999999998854
No 412
>PF13041 PPR_2: PPR repeat family
Probab=37.26 E-value=69 Score=24.79 Aligned_cols=30 Identities=13% Similarity=0.150 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003047 393 SMFNNNLGCIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 393 a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
...|+.+-..|.+.|++++|.+.|++..+.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 568899999999999999999999998875
No 413
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=36.96 E-value=59 Score=29.73 Aligned_cols=30 Identities=30% Similarity=0.303 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003047 26 VTATLAKEAALYFQSRKFDECLDLLKQLLD 55 (854)
Q Consensus 26 ~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~ 55 (854)
.+++++.+|+.....|+|++|.++++++-+
T Consensus 13 ~Ars~~~eAl~~a~~~~fe~A~~~l~~a~~ 42 (96)
T PF02255_consen 13 DARSLAMEALKAAREGDFEEAEELLKEADE 42 (96)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 588999999999999999999999998854
No 414
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=36.73 E-value=1.4e+02 Score=28.84 Aligned_cols=72 Identities=17% Similarity=0.116 Sum_probs=49.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHH
Q 003047 396 NNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQK 468 (854)
Q Consensus 396 ~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~k 468 (854)
+..+|...++.+++-.++-.|++||.+..++......+.... .-...-...||+..+..+|+.+=.+++++-
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dl-l~i~VisCHNLA~FWR~~gd~~yELkYLql 75 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDL-LTISVISCHNLADFWRSQGDSDYELKYLQL 75 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHH-HHHHHHHHhhHHHHHHHcCChHHHHHHHHH
Confidence 456899999999999999999999998665521110000000 001123457999999999999988887753
No 415
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=36.16 E-value=1.5e+02 Score=32.58 Aligned_cols=54 Identities=22% Similarity=0.253 Sum_probs=48.5
Q ss_pred HHHHcCCHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003047 665 VELEMENPVKALAAARSLLELPD--CSRIYIFLGHIYAAEALCLLNRPKEAAEHFS 718 (854)
Q Consensus 665 v~l~lg~~~~Al~~~~~lL~~p~--~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~ 718 (854)
.|.+.|+|..+++.+..=|..|+ ....|..++-+|+-..|+=+|+++||.+...
T Consensus 127 LysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 127 LYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELVV 182 (309)
T ss_pred HHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 57899999999999999998665 3456999999999999999999999999984
No 416
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=36.15 E-value=8.3e+02 Score=29.27 Aligned_cols=138 Identities=14% Similarity=0.076 Sum_probs=89.8
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 003047 345 KLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSA 424 (854)
Q Consensus 345 k~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~ 424 (854)
.+.+.. ..+..+++.++.+|... ..++=..+++++.+ .+-++ ...---|+..|.+ ++-.++..+|.||+..+-
T Consensus 90 ~~~l~~---~e~kmal~el~q~y~en-~n~~l~~lWer~ve-~dfnD-vv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI 162 (711)
T COG1747 90 TRVLEY---GESKMALLELLQCYKEN-GNEQLYSLWERLVE-YDFND-VVIGRELADKYEK-IKKSKAAEFFGKALYRFI 162 (711)
T ss_pred HHHHHh---cchHHHHHHHHHHHHhc-CchhhHHHHHHHHH-hcchh-HHHHHHHHHHHHH-hchhhHHHHHHHHHHHhc
Confidence 344444 57788999999999998 67788888998887 44422 2233346666665 888999999999998621
Q ss_pred h---c----------c---cCCc---cc----cc-cccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHH
Q 003047 425 S---L----------R---KDKP---LK----LL-TFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLW 480 (854)
Q Consensus 425 ~---l----------~---~~~~---l~----~~-~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw 480 (854)
. + . ..+. +. .. ......-.-++-.+-.-|....++.+|++.+...++.+..+..+.
T Consensus 163 ~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar 242 (711)
T COG1747 163 PRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWAR 242 (711)
T ss_pred chhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHH
Confidence 1 0 0 0000 00 00 001111122333344556667789999999999999999988888
Q ss_pred HHHHHHHHH
Q 003047 481 LRLAECCLM 489 (854)
Q Consensus 481 ~~La~~~i~ 489 (854)
-++.+.+..
T Consensus 243 ~~~i~~lRd 251 (711)
T COG1747 243 KEIIENLRD 251 (711)
T ss_pred HHHHHHHHH
Confidence 888776664
No 417
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=35.17 E-value=7.3e+02 Score=28.36 Aligned_cols=64 Identities=14% Similarity=0.127 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCC-HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 003047 27 TATLAKEAALYFQSRKFDECLDLLKQLLDK-KPDD-PKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKS 94 (854)
Q Consensus 27 ~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~-~~~~-~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~ 94 (854)
+..-..++...|+.++|.+|.++|+.+... .+.. ...+..|..+|..-..+ ++.++...+.+-.
T Consensus 131 ~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~f----d~~~A~~~l~~~~ 196 (379)
T PF09670_consen 131 GDREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRF----DHKEALEYLEKLL 196 (379)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHcc----CHHHHHHHHHHHH
Confidence 356677899999999999999999999985 3333 35777777776655542 3334555555444
No 418
>PF13934 ELYS: Nuclear pore complex assembly
Probab=34.72 E-value=2.8e+02 Score=29.36 Aligned_cols=120 Identities=16% Similarity=0.030 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003047 340 AKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKA 419 (854)
Q Consensus 340 A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kA 419 (854)
+...+-....+. ..-..+..|.+++..+++++|++++...-. .|. ....+-.++...|++..|+.|++-+
T Consensus 65 ~~~~Fa~~f~ip----~~~~~~~~g~W~LD~~~~~~A~~~L~~ps~--~~~----~~~~Il~~L~~~~~~~lAL~y~~~~ 134 (226)
T PF13934_consen 65 LAESFARAFGIP----PKYIKFIQGFWLLDHGDFEEALELLSHPSL--IPW----FPDKILQALLRRGDPKLALRYLRAV 134 (226)
T ss_pred HHHHHHHHhCCC----HHHHHHHHHHHHhChHhHHHHHHHhCCCCC--Ccc----cHHHHHHHHHHCCChhHHHHHHHhc
Confidence 455555555554 223457889999999999999999844321 232 2223445666689999999988763
Q ss_pred HHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003047 420 LSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLM 489 (854)
Q Consensus 420 L~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~ 489 (854)
=-. -...+... +-...+..+...||+.+-++.-. +.....|..+-+.|+.
T Consensus 135 ~p~-----------------l~s~~~~~-~~~~~La~~~v~EAf~~~R~~~~--~~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 135 GPP-----------------LSSPEALT-LYFVALANGLVTEAFSFQRSYPD--ELRRRLFEQLLEHCLE 184 (226)
T ss_pred CCC-----------------CCCHHHHH-HHHHHHHcCCHHHHHHHHHhCch--hhhHHHHHHHHHHHHH
Confidence 111 11223332 22334888999999988766554 3335678888887773
No 419
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=34.50 E-value=1.2e+02 Score=30.92 Aligned_cols=35 Identities=11% Similarity=0.128 Sum_probs=32.5
Q ss_pred ccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCC
Q 003047 441 KSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYK 475 (854)
Q Consensus 441 ~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~ 475 (854)
+++..+.+++.++...|+.++|.+...++..++|.
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 46788999999999999999999999999999993
No 420
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=34.39 E-value=55 Score=21.97 Aligned_cols=25 Identities=8% Similarity=-0.107 Sum_probs=15.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Q 003047 188 CLLLLDVALACHDAFRSADVLIYLE 212 (854)
Q Consensus 188 ~l~l~~vy~~~~~~~kA~~~l~~le 212 (854)
+..+++.|...|++++|.+++..+.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 3445677777777777776554443
No 421
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=34.00 E-value=1.5e+02 Score=29.10 Aligned_cols=51 Identities=12% Similarity=-0.141 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Q 003047 443 LLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEK 493 (854)
Q Consensus 443 ~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~ 493 (854)
.+.+...+...+..|+|.-|.+..+.++..+|++..+..-++.++.++...
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 345667788899999999999999999999999999999999999976654
No 422
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=33.84 E-value=2e+02 Score=32.43 Aligned_cols=64 Identities=19% Similarity=0.219 Sum_probs=50.2
Q ss_pred HHHHHhhcHHHHHHHHHHhhhccCCCchhhHH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhhhc
Q 003047 154 VIWFHLHEYAKALSVLEPLYQNIEPIDETTAL-QICLLLLDVALACHDAFRSADVLIYLEKAFSV 217 (854)
Q Consensus 154 ~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~-~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~ 217 (854)
++..+.++.++|++++|++...+...+++.++ .+....+.+++..|+.+++-++|+-.++.+..
T Consensus 83 ~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~ 147 (380)
T KOG2908|consen 83 VVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDS 147 (380)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhc
Confidence 34566678999999999999988888886433 23334668999999999999999888876643
No 423
>COG1447 CelC Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism]
Probab=33.62 E-value=65 Score=29.96 Aligned_cols=29 Identities=24% Similarity=0.269 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003047 27 TATLAKEAALYFQSRKFDECLDLLKQLLD 55 (854)
Q Consensus 27 ~~~l~~~a~~~~~~g~y~~Al~~l~~~l~ 55 (854)
+++.+.+|+++-..|+|++|-+.++++-+
T Consensus 19 ArS~~~eAl~~Ak~g~f~~A~~~i~eA~~ 47 (105)
T COG1447 19 ARSKAYEALKAAKEGDFEEAEELIQEAND 47 (105)
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 78899999999999999999999988743
No 424
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=33.13 E-value=66 Score=28.12 Aligned_cols=17 Identities=6% Similarity=-0.017 Sum_probs=13.4
Q ss_pred HhcCHHHHHHHHHHhhh
Q 003047 369 ARRNHRKAIKLLLALSN 385 (854)
Q Consensus 369 ~~g~~~kAl~~l~kal~ 385 (854)
..|+|++|+.+|..++.
T Consensus 18 ~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HccCHHHHHHHHHHHHH
Confidence 67888888888887776
No 425
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=33.04 E-value=5.6e+02 Score=30.16 Aligned_cols=124 Identities=10% Similarity=-0.028 Sum_probs=82.9
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 003047 344 VKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNS 423 (854)
Q Consensus 344 lk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~ 423 (854)
++.-++-+ |+|+..||.+-+.+-.+|.+++-.+.|++... .-|- .+.+|...-.--...+++..-...|.++|.-.
T Consensus 31 LRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~-pfp~-~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 31 LRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSS-PFPI-MEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcC-CCcc-ccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 34445667 99999999999999999999999999999998 6663 34455322222234567888888888888752
Q ss_pred hhcccCCccccccccCCccHHHHHHHHHHHHHCC----------CcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003047 424 ASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACG----------KPVLAARCFQKSSLVFYKQPLLWLRLAECCLM 489 (854)
Q Consensus 424 ~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~G----------k~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~ 489 (854)
.. ..+| .+..-|.+.- ..-+|++.-...+-.+|.....|..-+.....
T Consensus 107 l~-----------------ldLW-~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~ 164 (660)
T COG5107 107 LN-----------------LDLW-MLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEY 164 (660)
T ss_pred cc-----------------HhHH-HHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHh
Confidence 11 1222 1222232211 13456666666667889999999988877653
No 426
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=32.90 E-value=2e+02 Score=28.65 Aligned_cols=105 Identities=17% Similarity=0.041 Sum_probs=70.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHc--------CCCCh---------------------------HHHHHHHHHHHHHHH
Q 003047 660 ANLAYVELEMENPVKALAAARSLLE--------LPDCS---------------------------RIYIFLGHIYAAEAL 704 (854)
Q Consensus 660 ~~la~v~l~lg~~~~Al~~~~~lL~--------~p~~~---------------------------~~~~~la~lY~aeAl 704 (854)
...|...+..|++..|+....++.. .|... .....-.++-.++.+
T Consensus 6 i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~~ 85 (155)
T PF10938_consen 6 IQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANEL 85 (155)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHHH
Confidence 3457778999999999999887542 12111 344455566778889
Q ss_pred HhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHH
Q 003047 705 CLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNI 784 (854)
Q Consensus 705 ~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NL 784 (854)
+..|+..+|++.|+..-++ .++. ....|+. ......+.
T Consensus 86 l~~g~~~~A~~~L~~~~~e-i~~~-------------------------------------~~~lPL~----~~~~av~~ 123 (155)
T PF10938_consen 86 LKKGDKQAAREILKLAGSE-IDIT-------------------------------------TALLPLA----QTPAAVKQ 123 (155)
T ss_dssp HHTT-HHHHHHHHHHTT-E-EEEE-------------------------------------EEEEEHH----HHHHHHHH
T ss_pred HhCCCHHHHHHHHHHhccc-ceee-------------------------------------eeeCCHH----hhHHHHHH
Confidence 9999999999999988742 1110 0012332 44555779
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 003047 785 AAMFAMQGEFERAHHFVTQALS 806 (854)
Q Consensus 785 a~~~~~~g~~e~A~~~~~~Al~ 806 (854)
|..+...|++.+|...+.+|++
T Consensus 124 A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 124 AAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhc
Confidence 9999999999999999999975
No 427
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=32.71 E-value=1.5e+02 Score=28.49 Aligned_cols=61 Identities=16% Similarity=0.088 Sum_probs=44.3
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHhhhccCCC--------chhh--HHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 003047 150 LNIAVIWFHLHEYAKALSVLEPLYQNIEPI--------DETT--ALQICLLLLDVALACHDAFRSADVLIYLEK 213 (854)
Q Consensus 150 ~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~--------~e~~--~~~~~l~l~~vy~~~~~~~kA~~~l~~lek 213 (854)
.++|..-+..+++-.+|-.|++++...+.+ +|.+ -+..|-+|++.+...|+.+-.+ +|++-
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yEL---kYLql 75 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYEL---KYLQL 75 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHH---HHHHH
Confidence 456777777777777777777777655544 3333 4567889999999999999987 56663
No 428
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=32.20 E-value=5.3e+02 Score=28.83 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003047 23 VLSVTATLAKEAALYFQSRKFDECLDLLKQLLD 55 (854)
Q Consensus 23 ~~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~ 55 (854)
.+.++-.|..+|...-.+++|.+|+.+|+.+++
T Consensus 6 ~l~kaI~lv~kA~~eD~a~nY~eA~~lY~~ale 38 (439)
T KOG0739|consen 6 FLQKAIDLVKKAIDEDNAKNYEEALRLYQNALE 38 (439)
T ss_pred HHHHHHHHHHHHhhhcchhchHHHHHHHHHHHH
Confidence 688999999999999999999999999999987
No 429
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=31.79 E-value=78 Score=27.67 Aligned_cols=32 Identities=9% Similarity=-0.011 Sum_probs=18.4
Q ss_pred HHHHHHHHCCCcHHHHHHH-------HHHHHhcCCCHHH
Q 003047 448 NCGLQYLACGKPVLAARCF-------QKSSLVFYKQPLL 479 (854)
Q Consensus 448 nLG~~ll~~Gk~eeAl~~y-------~kAL~l~P~~~~a 479 (854)
..++-+-..|++++|+.|| .+++...||++..
T Consensus 11 ~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k 49 (75)
T cd02682 11 INAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTR 49 (75)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHH
Confidence 3444455555555555555 5555677888764
No 430
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=31.42 E-value=3.3e+02 Score=27.12 Aligned_cols=98 Identities=14% Similarity=0.090 Sum_probs=69.8
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhcCC-----C--------------------------------CCHHHHHHHHHHH
Q 003047 325 LYKVRFLLLTRNLKHAKREVKLAMNIARG-----K--------------------------------DSSLALFLKSQLE 367 (854)
Q Consensus 325 l~K~~lyl~~~~~~~A~~elk~al~~~~~-----P--------------------------------~~~~a~~lla~ly 367 (854)
+.+++..+..|+.++|++.+.++...-.. | .........++-.
T Consensus 6 i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~~ 85 (155)
T PF10938_consen 6 IQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANEL 85 (155)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHHH
Confidence 34688899999999999999998766520 1 1134567889999
Q ss_pred HHhcCHHHHHHHHHHhhhc------cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003047 368 YARRNHRKAIKLLLALSNR------TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 368 ~~~g~~~kAl~~l~kal~~------~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
+..|+.+.|.+.+.-+-.. .-|-.......+.+..+...|++.+|...+..|+.-
T Consensus 86 l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~~ 146 (155)
T PF10938_consen 86 LKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALDG 146 (155)
T ss_dssp HHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhcC
Confidence 9999999999999886542 112111223345788899999999999999999874
No 431
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=31.10 E-value=7.5e+02 Score=28.04 Aligned_cols=142 Identities=12% Similarity=0.053 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcC--------------------------HHHHHHHHHHhhhccCC
Q 003047 336 NLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRN--------------------------HRKAIKLLLALSNRTEM 389 (854)
Q Consensus 336 ~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~--------------------------~~kAl~~l~kal~~~dp 389 (854)
--++|++--+-+..+. |.+++++-+.+...++..+ .++++..+.+++....|
T Consensus 211 Lc~EairLgRll~~L~--p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~p 288 (415)
T COG4941 211 LCDEAIRLGRLLARLL--PGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRP 288 (415)
T ss_pred HHHHHHHHHHHHHHHc--CCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCC
Confidence 4577888888999999 9999999888888775443 56888888888874334
Q ss_pred CccHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhc-hh--cccC--------C----ccc-ccccc----CCccHH
Q 003047 390 GISSMFNNNLGCIYYQLA-----KYHTSSVFLSKALSNS-AS--LRKD--------K----PLK-LLTFS----QDKSLL 444 (854)
Q Consensus 390 ~~~a~~~nnLG~iy~~~g-----~~~eAi~~f~kAL~~~-~~--l~~~--------~----~l~-~~~~~----~~~~~~ 444 (854)
. +-.+--.+..+|...- ++..-..+| .+|..+ +. +.-| . ++. ...+. -+....
T Consensus 289 G-PYqlqAAIaa~HA~a~~aedtDW~~I~aLY-daL~~~apSPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~ 366 (415)
T COG4941 289 G-PYQLQAAIAALHARARRAEDTDWPAIDALY-DALEQAAPSPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHL 366 (415)
T ss_pred C-hHHHHHHHHHHHHhhcccCCCChHHHHHHH-HHHHHhCCCCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccc
Confidence 2 2223333555665432 333333344 444431 11 0000 0 010 00000 111223
Q ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHH
Q 003047 445 ITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWL 481 (854)
Q Consensus 445 ~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~ 481 (854)
.+--.|..+.++|+.++|...|++++.+.++.+...+
T Consensus 367 ~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~ 403 (415)
T COG4941 367 YHAARADLLARLGRVEEARAAYDRAIALARNAAERAF 403 (415)
T ss_pred cHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHH
Confidence 4456799999999999999999999999999876543
No 432
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.32 E-value=3e+02 Score=32.01 Aligned_cols=127 Identities=14% Similarity=0.122 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhhc--------cCCC-ccHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhchh-c
Q 003047 360 LFLKSQLEYARRNHRKAIKLLLALSNR--------TEMG-ISSMFNNNLGCIYYQLAKY---HTSSVFLSKALSNSAS-L 426 (854)
Q Consensus 360 ~~lla~ly~~~g~~~kAl~~l~kal~~--------~dp~-~~a~~~nnLG~iy~~~g~~---~eAi~~f~kAL~~~~~-l 426 (854)
++.+|...+...+|++|+.++..+-+. .+.. +.+..-..+-+||+.+++. ..|..-+.++-+-+.. +
T Consensus 166 ~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~sy 245 (568)
T KOG2561|consen 166 LHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERSY 245 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhhh
Confidence 455667777777788887777665431 1111 1233333356788877653 3343333333222110 0
Q ss_pred ccCCccccccc---cCCccH---HHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 003047 427 RKDKPLKLLTF---SQDKSL---LITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECC 487 (854)
Q Consensus 427 ~~~~~l~~~~~---~~~~~~---~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~ 487 (854)
+.+- ..+..+ ..|.++ ..+.--|++.+++|+-++|+++|+.+....-...-....|..|+
T Consensus 246 Genl-~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elki~d~~lsllv 311 (568)
T KOG2561|consen 246 GENL-SRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLELKINDETLSLLV 311 (568)
T ss_pred hhhh-HhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHeeccchHHHHHH
Confidence 0000 000000 012221 22334499999999999999999998775543322233344333
No 433
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=30.08 E-value=84 Score=26.40 Aligned_cols=31 Identities=19% Similarity=0.198 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHHHhhcHHHHHHHHHHhhh
Q 003047 144 DVSVAKLNIAVIWFHLHEYAKALSVLEPLYQ 174 (854)
Q Consensus 144 ~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~ 174 (854)
+.+..+.+.|+-.=..|+|.+|+.+|.+.+.
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3567788999999999999999999987776
No 434
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=29.98 E-value=4.5e+02 Score=31.25 Aligned_cols=89 Identities=12% Similarity=0.011 Sum_probs=53.1
Q ss_pred chhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcC-HHHHHHHHH
Q 003047 303 NELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRN-HRKAIKLLL 381 (854)
Q Consensus 303 ~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~-~~kAl~~l~ 381 (854)
+.|+..|..-...+-.. ..++.--.....+.+...+-..-+..++..+ |++++.|+.-|.+.+..+. .+-|-.++.
T Consensus 88 ~rIv~lyr~at~rf~~D-~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H--p~~~dLWI~aA~wefe~n~ni~saRalfl 164 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGD-VKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH--PNNPDLWIYAAKWEFEINLNIESARALFL 164 (568)
T ss_pred HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCchhHHhhhhhHHhhccchHHHHHHHH
Confidence 56666664432222111 1233332333444444666667777777777 8888888888877776665 777777778
Q ss_pred HhhhccCCCccHHHH
Q 003047 382 ALSNRTEMGISSMFN 396 (854)
Q Consensus 382 kal~~~dp~~~a~~~ 396 (854)
+.|+ -+|+ .+..|
T Consensus 165 rgLR-~npd-sp~Lw 177 (568)
T KOG2396|consen 165 RGLR-FNPD-SPKLW 177 (568)
T ss_pred HHhh-cCCC-ChHHH
Confidence 8877 5673 45444
No 435
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=29.89 E-value=6.1e+02 Score=29.30 Aligned_cols=129 Identities=13% Similarity=0.007 Sum_probs=77.7
Q ss_pred CCCHHHHH-HHHHHHHHhcCHHHHHHHHHHhhhc--cCC--CccHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHH
Q 003047 354 KDSSLALF-LKSQLEYARRNHRKAIKLLLALSNR--TEM--GISSMFNNNLGCIYYQLAKY-------HTSSVFLSKALS 421 (854)
Q Consensus 354 P~~~~a~~-lla~ly~~~g~~~kAl~~l~kal~~--~dp--~~~a~~~nnLG~iy~~~g~~-------~eAi~~f~kAL~ 421 (854)
++.++... .+|++.+..++|+-|+..|+.+.+. .|. ...+.++-..|.+.+-++.. +....+++.|+.
T Consensus 204 ~~S~E~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~ 283 (414)
T PF12739_consen 204 ADSPEAQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYY 283 (414)
T ss_pred CCChHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHH
Confidence 45555554 6799999999999999999998873 111 01122333445555555533 366677777776
Q ss_pred hchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh--cC--C---CHHHHHHHHHHH
Q 003047 422 NSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLV--FY--K---QPLLWLRLAECC 487 (854)
Q Consensus 422 ~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l--~P--~---~~~aw~~La~~~ 487 (854)
......... ...+. -...+....+.++...|.+.+|...+-+.... .. . .+-+|-++|.|+
T Consensus 284 ~Y~~~~~~~----~~~~~-~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~ 351 (414)
T PF12739_consen 284 TYLKSALPR----CSLPY-YALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCY 351 (414)
T ss_pred HHHhhhccc----ccccc-chHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhh
Confidence 522100000 00000 11234555678888999998988877777766 32 3 445688899988
No 436
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=29.89 E-value=72 Score=21.36 Aligned_cols=27 Identities=11% Similarity=0.167 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003047 395 FNNNLGCIYYQLAKYHTSSVFLSKALS 421 (854)
Q Consensus 395 ~~nnLG~iy~~~g~~~eAi~~f~kAL~ 421 (854)
.|+.+=..|.+.|++++|...|++-.+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 467777888888899988888887654
No 437
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=29.60 E-value=3.3e+02 Score=38.06 Aligned_cols=136 Identities=18% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHH-HHHHhhhcccccCCCCCCccc
Q 003047 152 IAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLI-YLEKAFSVGCVNQVDSGSMGQ 230 (854)
Q Consensus 152 ~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~-~lek~l~~~~~~~~~~~~~~~ 230 (854)
+|++-++.+-|..|+-++|+- ...+.+...-..-++++=.+|...+++|.-..+.. ++...--..
T Consensus 1389 La~aSfrc~~y~RalmylEs~--~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl~~------------ 1454 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESH--RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSLYQ------------ 1454 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHh--ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccHHH------------
Q ss_pred chhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhh
Q 003047 231 QSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLV 310 (854)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 310 (854)
T Consensus 1455 -------------------------------------------------------------------------------- 1454 (2382)
T KOG0890|consen 1455 -------------------------------------------------------------------------------- 1454 (2382)
T ss_pred --------------------------------------------------------------------------------
Q ss_pred hcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCC
Q 003047 311 DRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMG 390 (854)
Q Consensus 311 ~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~ 390 (854)
+...+-..|++..|..++++++..+ |+....+.-.=.-.+..|.++..+...+.... ..+
T Consensus 1455 ----------------qil~~e~~g~~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~-~~s- 1514 (2382)
T KOG0890|consen 1455 ----------------QILEHEASGNWADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLII-NRS- 1514 (2382)
T ss_pred ----------------HHHHHHhhccHHHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhh-ccC-
Q ss_pred ccHHHHHHHHH
Q 003047 391 ISSMFNNNLGC 401 (854)
Q Consensus 391 ~~a~~~nnLG~ 401 (854)
....-++++|+
T Consensus 1515 e~~~~~~s~~~ 1525 (2382)
T KOG0890|consen 1515 EEVDELNSLGV 1525 (2382)
T ss_pred HHHHHHHHHHH
No 438
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=29.45 E-value=89 Score=27.13 Aligned_cols=17 Identities=18% Similarity=0.202 Sum_probs=13.2
Q ss_pred HhcCHHHHHHHHHHhhh
Q 003047 369 ARRNHRKAIKLLLALSN 385 (854)
Q Consensus 369 ~~g~~~kAl~~l~kal~ 385 (854)
..|+|++|+.+|..++.
T Consensus 18 ~~g~y~eA~~lY~~ale 34 (75)
T cd02684 18 QRGDAAAALSLYCSALQ 34 (75)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 66888888888877776
No 439
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=29.09 E-value=4.6e+02 Score=30.36 Aligned_cols=128 Identities=9% Similarity=-0.028 Sum_probs=90.0
Q ss_pred cCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcC--HHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcC-C---
Q 003047 335 RNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRN--HRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLA-K--- 408 (854)
Q Consensus 335 ~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~--~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g-~--- 408 (854)
..+++-++-...++..+ |+...+|+-.-.++..++. +.+-+.+++++++ .+|.+.. .|+-.=.++.... .
T Consensus 89 ~~ld~eL~~~~~~L~~n--pksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~-~D~RNfh-~W~YRRfV~~~~~~~~~~ 164 (421)
T KOG0529|consen 89 ALLDEELKYVESALKVN--PKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALK-QDPRNFH-AWHYRRFVVEQAERSRNL 164 (421)
T ss_pred HhhHHHHHHHHHHHHhC--chhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh-cCccccc-chHHHHHHHHHHhccccc
Confidence 35677778888899999 9999999999988887765 5899999999999 7886443 4443433333322 2
Q ss_pred HHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHH------CCC------cHHHHHHHHHHHHhcCCC
Q 003047 409 YHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLA------CGK------PVLAARCFQKSSLVFYKQ 476 (854)
Q Consensus 409 ~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~------~Gk------~eeAl~~y~kAL~l~P~~ 476 (854)
..+=+.+..+++.. +..+..+|.+.-..+-. .|. ...-++.-..|+=-+|++
T Consensus 165 ~~~El~ftt~~I~~----------------nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~D 228 (421)
T KOG0529|consen 165 EKEELEFTTKLIND----------------NFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPED 228 (421)
T ss_pred chhHHHHHHHHHhc----------------cchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccc
Confidence 56667777777775 23356677666555541 231 334557777888889999
Q ss_pred HHHHHH
Q 003047 477 PLLWLR 482 (854)
Q Consensus 477 ~~aw~~ 482 (854)
+.+|++
T Consensus 229 qS~WfY 234 (421)
T KOG0529|consen 229 QSCWFY 234 (421)
T ss_pred cceeee
Confidence 999987
No 440
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=28.60 E-value=87 Score=27.62 Aligned_cols=14 Identities=29% Similarity=0.311 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHhc
Q 003047 338 KHAKREVKLAMNIA 351 (854)
Q Consensus 338 ~~A~~elk~al~~~ 351 (854)
+.|++++.+++..+
T Consensus 6 ~~A~~~I~kaL~~d 19 (79)
T cd02679 6 KQAFEEISKALRAD 19 (79)
T ss_pred HHHHHHHHHHhhhh
Confidence 44444444444444
No 441
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=28.03 E-value=1.2e+02 Score=20.82 Aligned_cols=26 Identities=12% Similarity=0.057 Sum_probs=21.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Q 003047 188 CLLLLDVALACHDAFRSADVLIYLEK 213 (854)
Q Consensus 188 ~l~l~~vy~~~~~~~kA~~~l~~lek 213 (854)
+..++..+...|+++.|..+++.+++
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45577888899999999988888775
No 442
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=27.83 E-value=1.1e+02 Score=20.82 Aligned_cols=28 Identities=11% Similarity=0.013 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003047 395 FNNNLGCIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 395 ~~nnLG~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
.|+.+-..|.+.|++++|...|++....
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 3677778899999999999999986653
No 443
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=27.37 E-value=2.3e+02 Score=26.16 Aligned_cols=51 Identities=14% Similarity=0.186 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 003047 777 RGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGK 827 (854)
Q Consensus 777 ~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~ 827 (854)
.+.....-|.+-...||+.+|++.+.++.+..+..+...++.+..-..+||
T Consensus 58 ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 58 KAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 455667788999999999999999999977655555566666666556664
No 444
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=26.90 E-value=9.6e+02 Score=27.12 Aligned_cols=58 Identities=19% Similarity=0.292 Sum_probs=39.4
Q ss_pred chhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCH
Q 003047 142 EFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDA 201 (854)
Q Consensus 142 ~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~ 201 (854)
+.+...++.++|..|.+.|+-+.|++.+.+.+..--.+.-. +.|.|-++.+-+--++.
T Consensus 100 E~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~k--iDVvf~~iRlglfy~D~ 157 (393)
T KOG0687|consen 100 ESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHK--IDVVFYKIRLGLFYLDH 157 (393)
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccc--hhhHHHHHHHHHhhccH
Confidence 55677899999999999999999999999888743333322 23444444433333333
No 445
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=26.80 E-value=1.2e+02 Score=25.27 Aligned_cols=31 Identities=26% Similarity=0.188 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 003047 691 IYIFLGHIYAAEALCLLNRPKEAAEHFSMYL 721 (854)
Q Consensus 691 ~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l 721 (854)
.|=++.|+..-..|+.+|++++|.+++....
T Consensus 20 RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 20 RHDFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5667888888889999999999999999887
No 446
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=25.50 E-value=72 Score=39.09 Aligned_cols=55 Identities=16% Similarity=0.233 Sum_probs=40.7
Q ss_pred HhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhch
Q 003047 369 ARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQL---------AKYHTSSVFLSKALSNSA 424 (854)
Q Consensus 369 ~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~---------g~~~eAi~~f~kAL~~~~ 424 (854)
.-|+-.+|+...-.++.+..| ..++.|..-|.||..+ +..+.|+++|+||++.-|
T Consensus 255 r~GDRakAL~~~l~lve~eg~-vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP 318 (1226)
T KOG4279|consen 255 RPGDRAKALNTVLPLVEKEGP-VAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEP 318 (1226)
T ss_pred CCccHHHHHHHHHHHHHhcCC-CCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCc
Confidence 447788888888888774444 3456666678888753 557889999999999844
No 447
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=25.20 E-value=3e+02 Score=29.34 Aligned_cols=57 Identities=16% Similarity=0.032 Sum_probs=51.3
Q ss_pred HHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCC
Q 003047 331 LLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMG 390 (854)
Q Consensus 331 yl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~ 390 (854)
++..+.+.+|+...+.-++.. |.+......+=+++...|++++|...++-+-. ..|.
T Consensus 11 LL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~-l~p~ 67 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT-LSPQ 67 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhh-cCcc
Confidence 456789999999999999999 99999999999999999999999999998887 5664
No 448
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=24.50 E-value=2.7e+02 Score=34.12 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=22.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCcccccc
Q 003047 817 TAIYVDLMLGKSQEALAKLKYCNHVRFLPSG 847 (854)
Q Consensus 817 l~~y~~L~~G~~~eA~~~lk~~~~~~~~~~~ 847 (854)
..++-+...|++++|++.+.+.+.+|.++.-
T Consensus 510 ~~ff~~~~~g~~~~AL~~i~~L~liP~~~~~ 540 (613)
T PF04097_consen 510 AEFFDLYHAGQYEQALDIIEKLDLIPLDPSE 540 (613)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHTT-S-S-HHH
T ss_pred HHHHHHHHcCCHHHHHHHHHhCCCCCCCHHH
Confidence 4677788899999999999999999976653
No 449
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=24.44 E-value=1.2e+02 Score=26.47 Aligned_cols=17 Identities=12% Similarity=0.061 Sum_probs=11.6
Q ss_pred HhcCHHHHHHHHHHhhh
Q 003047 369 ARRNHRKAIKLLLALSN 385 (854)
Q Consensus 369 ~~g~~~kAl~~l~kal~ 385 (854)
..|+|++|+.+|..++.
T Consensus 18 ~~~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 18 EEGDYEAAFEFYRAGVD 34 (75)
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 44777777777777665
No 450
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=24.22 E-value=7e+02 Score=24.63 Aligned_cols=60 Identities=13% Similarity=0.123 Sum_probs=39.2
Q ss_pred HHHHHHHH-HhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003047 361 FLKSQLEY-ARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 361 ~lla~ly~-~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
+.+|.-+. .+|+-++=-+++..+.+-.++ ++.++..+|..|.+.|+..+|-+.+++|-+.
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~~~--~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNEEI--NPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH-----S---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhccCC--CHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 44444333 556666666666666541233 5788999999999999999999999999774
No 451
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=23.47 E-value=3.9e+02 Score=30.94 Aligned_cols=125 Identities=15% Similarity=0.112 Sum_probs=64.5
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH--HHhcCHHHHHHHHHHhhhccCCCccH------------
Q 003047 328 VRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLE--YARRNHRKAIKLLLALSNRTEMGISS------------ 393 (854)
Q Consensus 328 ~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly--~~~g~~~kAl~~l~kal~~~dp~~~a------------ 393 (854)
.-.+...+--++-..+++.+..+. .++...+..+-.++ ..+.+..+-++.+.+- .+|..++
T Consensus 159 ~f~~yr~n~~krn~deie~l~si~--sn~wniy~iLnil~slv~ksqi~~ql~~~~s~---~dp~~va~~~g~s~~y~~L 233 (525)
T KOG3677|consen 159 EFKQYRANAEKRNKDEIENLQSIF--SNNWNIYWILNILHSLVDKSQISIQLTASVSN---KDPALVALIFGASQPYANL 233 (525)
T ss_pred HHHHHhcChhhcCHHHHHHHHhcc--cccchHHHHHHHHHHHHHHHHHHHHHHHHhcC---CChhhhhhhhccccHHHhh
Confidence 333444444455678889999887 65555444333332 2333333333332221 2332111
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh-cccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Q 003047 394 --MFNNNLGCIYYQLAKYHTSSVFLSKALSNSAS-LRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSS 470 (854)
Q Consensus 394 --~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~-l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL 470 (854)
..+..|-..|.-+|+ .+| --+.+.+++. +.. ..+...+-|..|.+|+.+++|.+|++.|-.+|
T Consensus 234 gyfsL~GLlR~H~lLgD-hQa---t~q~idi~pk~iy~----------t~p~c~VTY~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 234 GYFSLLGLLRMHILLGD-HQA---TSQILDIMPKEIYG----------TEPMCRVTYQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred hHHHHHHHHHHHHHhhh-hHh---hhhhhhcCchhhcC----------cccceeEeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 112222335556777 444 3344444321 100 11112223789999999999999999998876
Q ss_pred H
Q 003047 471 L 471 (854)
Q Consensus 471 ~ 471 (854)
-
T Consensus 300 l 300 (525)
T KOG3677|consen 300 L 300 (525)
T ss_pred H
Confidence 4
No 452
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=23.12 E-value=1.4e+02 Score=20.88 Aligned_cols=29 Identities=21% Similarity=0.192 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHC----CCcHHHHHHHHHHHHh
Q 003047 444 LITYNCGLQYLAC----GKPVLAARCFQKSSLV 472 (854)
Q Consensus 444 ~~~~nLG~~ll~~----Gk~eeAl~~y~kAL~l 472 (854)
.+.+++|.+|+.- .++++|+..|+++.+.
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 4577888888753 3689999999998764
No 453
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=22.17 E-value=9.5e+02 Score=27.26 Aligned_cols=95 Identities=13% Similarity=0.025 Sum_probs=61.9
Q ss_pred HhcCHHHHHHHHHHhhhc----cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCc-cH
Q 003047 369 ARRNHRKAIKLLLALSNR----TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDK-SL 443 (854)
Q Consensus 369 ~~g~~~kAl~~l~kal~~----~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~-~~ 443 (854)
+.++.++|+++++++... .+|.........+|.++...|+..++.+.+...=...-.+. . .++ -.
T Consensus 87 ~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~---~-------v~~~Vh 156 (380)
T KOG2908|consen 87 QISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLD---G-------VTSNVH 156 (380)
T ss_pred HhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccc---C-------CChhhh
Confidence 456899999999998873 34533344445579999999999999887776555421111 0 122 24
Q ss_pred HHHHHHHHHHHHC-CCcHHHHHHHHHHHHhc
Q 003047 444 LITYNCGLQYLAC-GKPVLAARCFQKSSLVF 473 (854)
Q Consensus 444 ~~~~nLG~~ll~~-Gk~eeAl~~y~kAL~l~ 473 (854)
..+|.++.-|++. |++...+.+.-+.|...
T Consensus 157 ~~fY~lssqYyk~~~d~a~yYr~~L~YL~~~ 187 (380)
T KOG2908|consen 157 SSFYSLSSQYYKKIGDFASYYRHALLYLGCS 187 (380)
T ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHhccc
Confidence 5677778777765 55777776665555444
No 454
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=22.15 E-value=2.6e+02 Score=19.84 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHHHH
Q 003047 61 PKILHNIAIAEYFRDGC-TDPKKLLEALNNVKNKSE 95 (854)
Q Consensus 61 ~~~l~nla~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 95 (854)
|.+.++||.++++..+. ..+.+..+++.+++++.+
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHH
Confidence 56889999666666555 455678889999998874
No 455
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=21.96 E-value=1.2e+02 Score=33.83 Aligned_cols=72 Identities=7% Similarity=-0.009 Sum_probs=59.1
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHh
Q 003047 347 AMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNN-LGCIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 347 al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nn-LG~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
..+.. |+++..|..-+..-...+.|.+--.+|..++. .+| .+++.|.. -..-|.-.++.+.+-..|.++|..
T Consensus 99 ~tnkf--f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~-khP-~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~ 171 (435)
T COG5191 99 STNKF--FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLT-KHP-LNVDLWIYCCAFELFEIANIESSRAMFLKGLRM 171 (435)
T ss_pred hhhcC--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC-CCceeeeeeccchhhhhccHHHHHHHHHhhhcc
Confidence 34455 99999999988888899999999999999999 789 46777753 233456788999999999999998
No 456
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=21.62 E-value=4.7e+02 Score=21.81 Aligned_cols=53 Identities=19% Similarity=0.191 Sum_probs=40.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhcCCHHHHHHHH
Q 003047 783 NIAAMFAMQGEFERAHHFVTQALSILPRS------TEATLTAIYVDLMLGKSQEALAKL 835 (854)
Q Consensus 783 NLa~~~~~~g~~e~A~~~~~~Al~~~P~~------~~a~~l~~y~~L~~G~~~eA~~~l 835 (854)
.-|..+...|+|=+|.+.++.+-...|+. +.+....++.+++.||..-|..++
T Consensus 4 ~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 4 EEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 35677788899999999999986555433 557777888899999999998764
No 457
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=21.45 E-value=1.3e+02 Score=35.08 Aligned_cols=31 Identities=26% Similarity=0.473 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003047 25 SVTATLAKEAALYFQSRKFDECLDLLKQLLD 55 (854)
Q Consensus 25 ~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~ 55 (854)
+.-...+..|+++|..|+|.+|++.|+.+|-
T Consensus 202 ~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~ 232 (422)
T PF06957_consen 202 SSLEERLKEGYKLFTAGKFEEAIEIFRSILH 232 (422)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3445678899999999999999999999987
No 458
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=21.33 E-value=1.4e+02 Score=26.06 Aligned_cols=31 Identities=16% Similarity=0.003 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHHHHhhcHHHHHHHHHHhhh
Q 003047 144 DVSVAKLNIAVIWFHLHEYAKALSVLEPLYQ 174 (854)
Q Consensus 144 ~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~ 174 (854)
..+..+...|+-+=..|+|++|+.+|.+.+.
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4677888889999999999999999987777
No 459
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=21.27 E-value=1.4e+02 Score=28.61 Aligned_cols=29 Identities=38% Similarity=0.425 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 003047 693 IFLGHIYAAEALCLLNRPKEAAEHFSMYL 721 (854)
Q Consensus 693 ~~la~lY~aeAl~~lgr~~eAl~~l~~~l 721 (854)
+|+-.+.++|.|+..|++++|+.||-.++
T Consensus 62 ~Fl~qV~lGE~L~~~G~~~~aa~hf~nAl 90 (121)
T PF02064_consen 62 FFLQQVQLGEQLLAQGDYEEAAEHFYNAL 90 (121)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHH
No 460
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=20.95 E-value=1.9e+02 Score=28.13 Aligned_cols=39 Identities=10% Similarity=0.006 Sum_probs=29.9
Q ss_pred HHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 450 GLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 450 G~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
-..++..-+.+.|...|.+.++.+|++..+|+.|.++.-
T Consensus 83 q~~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lD 121 (139)
T PF12583_consen 83 QCSWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLD 121 (139)
T ss_dssp HHHHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHH
T ss_pred HHHHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccC
Confidence 344555666788999999999999999999999988765
No 461
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=20.67 E-value=1.1e+03 Score=28.99 Aligned_cols=29 Identities=14% Similarity=-0.001 Sum_probs=19.5
Q ss_pred HHHHHHCCCcHHHHHHHHHHHHhcCCCHHH
Q 003047 450 GLQYLACGKPVLAARCFQKSSLVFYKQPLL 479 (854)
Q Consensus 450 G~~ll~~Gk~eeAl~~y~kAL~l~P~~~~a 479 (854)
...++..|++++|++.+++ +.+-|.++.-
T Consensus 512 ff~~~~~g~~~~AL~~i~~-L~liP~~~~~ 540 (613)
T PF04097_consen 512 FFDLYHAGQYEQALDIIEK-LDLIPLDPSE 540 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHH-TT-S-S-HHH
T ss_pred HHHHHHcCCHHHHHHHHHh-CCCCCCCHHH
Confidence 3447789999999999888 7788966654
No 462
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=20.56 E-value=3.5e+02 Score=28.83 Aligned_cols=102 Identities=9% Similarity=-0.017 Sum_probs=56.1
Q ss_pred HHHHHhcCHHHHHHHHHHhhhc--cCCC----ccHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCcccc
Q 003047 365 QLEYARRNHRKAIKLLLALSNR--TEMG----ISSM----FNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKL 434 (854)
Q Consensus 365 ~ly~~~g~~~kAl~~l~kal~~--~dp~----~~a~----~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~ 434 (854)
.+.+.-|+|+.|+++..-++.. .-|+ +.+. -...-+......|+.-+ -+|.+.+..+.. .
T Consensus 91 vW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e--~~~~~~~~~l~~--------~ 160 (230)
T PHA02537 91 VWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVE--PYFLRVFLDLTT--------E 160 (230)
T ss_pred eeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCC--hHHHHHHHHHHh--------c
Confidence 4567889999999999999984 1221 0111 11112222333444211 122222222110 0
Q ss_pred ccccCCccHHHHHHHHHHHH---------HCCCcHHHHHHHHHHHHhcCCC
Q 003047 435 LTFSQDKSLLITYNCGLQYL---------ACGKPVLAARCFQKSSLVFYKQ 476 (854)
Q Consensus 435 ~~~~~~~~~~~~~nLG~~ll---------~~Gk~eeAl~~y~kAL~l~P~~ 476 (854)
..++..-++..+--+|..++ ..+++..|+.+|++|+.++|+-
T Consensus 161 ~dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 161 WDMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred CCCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 11112234556666787774 4567889999999999999985
No 463
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=20.41 E-value=1.6e+02 Score=26.02 Aligned_cols=36 Identities=8% Similarity=-0.006 Sum_probs=25.2
Q ss_pred cCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 003047 371 RNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNS 423 (854)
Q Consensus 371 g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~ 423 (854)
+.|++|.++.++++. +-..|+.++|+.+|++++..+
T Consensus 3 ~~~~~A~~~I~kaL~-----------------~dE~g~~e~Al~~Y~~gi~~l 38 (79)
T cd02679 3 GYYKQAFEEISKALR-----------------ADEWGDKEQALAHYRKGLREL 38 (79)
T ss_pred hHHHHHHHHHHHHhh-----------------hhhcCCHHHHHHHHHHHHHHH
Confidence 445666666666655 334478899999999999874
Done!